Query 002100
Match_columns 967
No_of_seqs 986 out of 5358
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 16:30:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002100.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002100hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 9E-44 1.9E-48 381.5 32.7 429 458-953 49-494 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 3E-41 6.5E-46 362.2 32.7 391 449-933 108-508 (966)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-33 3.4E-38 357.9 65.9 493 454-962 360-884 (899)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 5.4E-33 1.2E-37 353.0 64.8 494 452-957 120-643 (899)
5 PRK11447 cellulose synthase su 100.0 1E-32 2.3E-37 353.1 59.5 412 414-859 25-536 (1157)
6 PRK11447 cellulose synthase su 100.0 6.5E-32 1.4E-36 345.8 60.5 469 442-943 166-739 (1157)
7 TIGR00990 3a0801s09 mitochondr 100.0 1.4E-31 3.1E-36 322.5 49.6 418 456-952 126-579 (615)
8 KOG2002 TPR-containing nuclear 100.0 1.2E-28 2.5E-33 280.2 54.3 503 439-953 146-754 (1018)
9 TIGR00990 3a0801s09 mitochondr 100.0 7.2E-29 1.6E-33 299.0 45.3 415 457-946 160-599 (615)
10 PRK09782 bacteriophage N4 rece 100.0 2.5E-27 5.5E-32 289.7 56.2 496 443-961 64-723 (987)
11 KOG2002 TPR-containing nuclear 100.0 3.7E-27 8.1E-32 268.0 47.2 471 463-962 134-729 (1018)
12 PRK09782 bacteriophage N4 rece 100.0 3.9E-25 8.4E-30 270.6 54.6 555 367-949 29-745 (987)
13 PRK10049 pgaA outer membrane p 100.0 2.1E-26 4.6E-31 282.4 42.9 400 462-956 20-468 (765)
14 PRK15174 Vi polysaccharide exp 100.0 3.1E-26 6.7E-31 275.1 42.7 315 536-915 59-385 (656)
15 KOG0547 Translocase of outer m 100.0 2.6E-26 5.5E-31 242.7 36.5 432 455-960 113-582 (606)
16 PRK15174 Vi polysaccharide exp 100.0 4.7E-26 1E-30 273.5 41.2 348 551-962 40-404 (656)
17 PRK10049 pgaA outer membrane p 99.9 3.3E-24 7.3E-29 263.0 44.6 381 548-955 10-433 (765)
18 PHA02713 hypothetical protein; 99.9 1E-26 2.2E-31 272.8 17.2 194 241-446 11-215 (557)
19 KOG4441 Proteins containing BT 99.9 3.3E-26 7.1E-31 266.8 16.0 200 239-447 20-227 (571)
20 PHA02790 Kelch-like protein; P 99.9 3.7E-26 8E-31 264.6 15.2 175 248-431 15-196 (480)
21 PHA03098 kelch-like protein; P 99.9 1.3E-25 2.9E-30 266.4 19.4 184 250-446 4-197 (534)
22 KOG0548 Molecular co-chaperone 99.9 8E-23 1.7E-27 220.5 36.5 426 460-962 5-473 (539)
23 KOG0547 Translocase of outer m 99.9 4.6E-23 9.9E-28 218.3 33.6 392 518-962 117-550 (606)
24 KOG4350 Uncharacterized conser 99.9 5.5E-26 1.2E-30 233.0 10.5 190 239-432 28-222 (620)
25 PRK14574 hmsH outer membrane p 99.9 2.1E-21 4.6E-26 233.2 48.3 444 452-954 29-523 (822)
26 KOG0624 dsRNA-activated protei 99.9 1.1E-22 2.4E-27 206.1 29.3 343 522-962 44-388 (504)
27 KOG1155 Anaphase-promoting com 99.9 7.4E-21 1.6E-25 200.6 39.6 421 460-963 81-555 (559)
28 KOG1155 Anaphase-promoting com 99.9 2.3E-20 4.9E-25 197.0 41.6 362 456-914 163-539 (559)
29 KOG2003 TPR repeat-containing 99.9 3.7E-21 7.9E-26 200.8 33.9 455 491-959 203-704 (840)
30 KOG1126 DNA-binding cell divis 99.9 3.2E-22 6.9E-27 221.1 26.4 297 556-950 320-626 (638)
31 KOG1126 DNA-binding cell divis 99.9 1.6E-21 3.6E-26 215.5 25.5 295 525-914 326-623 (638)
32 KOG1174 Anaphase-promoting com 99.9 3.3E-19 7.1E-24 185.3 40.5 288 671-965 225-521 (564)
33 PRK11788 tetratricopeptide rep 99.9 3.1E-20 6.7E-25 212.4 36.8 301 553-943 35-346 (389)
34 KOG1173 Anaphase-promoting com 99.9 2E-19 4.3E-24 194.7 40.4 441 461-962 53-536 (611)
35 PRK14574 hmsH outer membrane p 99.9 2.8E-19 6E-24 215.1 44.8 397 534-955 49-490 (822)
36 KOG0495 HAT repeat protein [RN 99.9 1.5E-17 3.3E-22 181.7 53.1 477 439-957 395-893 (913)
37 PRK11788 tetratricopeptide rep 99.9 5.6E-20 1.2E-24 210.3 32.1 272 630-959 39-326 (389)
38 KOG0624 dsRNA-activated protei 99.9 1.3E-18 2.7E-23 176.9 32.5 316 452-855 33-378 (504)
39 KOG0548 Molecular co-chaperone 99.9 9.3E-19 2E-23 189.3 31.9 380 523-952 9-429 (539)
40 KOG0495 HAT repeat protein [RN 99.8 3.8E-16 8.2E-21 170.9 51.0 446 478-962 367-864 (913)
41 KOG2076 RNA polymerase III tra 99.8 3.7E-18 8.1E-23 194.3 35.7 361 557-942 143-553 (895)
42 KOG2003 TPR repeat-containing 99.8 1.3E-18 2.8E-23 181.9 28.6 411 458-929 238-708 (840)
43 KOG1173 Anaphase-promoting com 99.8 1.9E-18 4.2E-23 187.2 31.0 365 458-888 142-529 (611)
44 KOG4162 Predicted calmodulin-b 99.8 2E-16 4.4E-21 177.4 41.6 431 456-949 322-788 (799)
45 KOG1127 TPR repeat-containing 99.8 1.4E-16 2.9E-21 181.9 37.3 465 439-958 474-1081(1238)
46 TIGR00540 hemY_coli hemY prote 99.8 4.8E-17 1E-21 185.9 34.2 296 556-944 87-399 (409)
47 KOG2076 RNA polymerase III tra 99.8 4.8E-17 1E-21 185.4 33.1 335 586-945 139-513 (895)
48 KOG0550 Molecular chaperone (D 99.8 2.8E-18 6.1E-23 179.1 19.8 308 522-962 55-367 (486)
49 PLN03081 pentatricopeptide (PP 99.8 8.6E-16 1.9E-20 188.4 45.2 407 462-943 128-556 (697)
50 KOG2075 Topoisomerase TOP1-int 99.8 1.2E-18 2.6E-23 185.0 14.7 180 243-431 102-296 (521)
51 PRK12370 invasion protein regu 99.8 3.4E-17 7.5E-22 194.0 27.2 245 536-847 278-535 (553)
52 PLN03081 pentatricopeptide (PP 99.8 1.8E-15 4E-20 185.5 43.0 420 460-955 90-534 (697)
53 KOG4162 Predicted calmodulin-b 99.8 6.3E-16 1.4E-20 173.5 34.5 428 410-915 315-787 (799)
54 KOG4591 Uncharacterized conser 99.8 9E-19 2E-23 163.5 9.6 160 239-404 50-220 (280)
55 PRK10747 putative protoheme IX 99.8 1.4E-15 3E-20 172.9 37.0 300 556-945 87-391 (398)
56 KOG1127 TPR repeat-containing 99.8 5.7E-16 1.2E-20 176.9 31.9 385 535-942 474-911 (1238)
57 KOG1174 Anaphase-promoting com 99.8 3.5E-15 7.6E-20 155.6 34.9 277 575-916 220-505 (564)
58 PLN03077 Protein ECB2; Provisi 99.8 5.2E-15 1.1E-19 186.0 44.0 439 459-941 255-717 (857)
59 TIGR00540 hemY_coli hemY prote 99.8 1.8E-15 3.9E-20 172.9 36.0 305 455-847 82-399 (409)
60 PRK11189 lipoprotein NlpI; Pro 99.8 1.1E-16 2.5E-21 174.1 23.9 143 664-846 46-193 (296)
61 PLN03218 maturation of RBCL 1; 99.7 6.9E-14 1.5E-18 173.4 50.4 376 465-913 378-785 (1060)
62 PRK12370 invasion protein regu 99.7 3.3E-16 7.2E-21 185.6 28.8 269 588-944 260-535 (553)
63 PRK10747 putative protoheme IX 99.7 2.8E-15 6E-20 170.4 34.9 305 455-848 82-391 (398)
64 PRK11189 lipoprotein NlpI; Pro 99.7 5.9E-16 1.3E-20 168.5 27.3 221 692-955 40-277 (296)
65 PLN03077 Protein ECB2; Provisi 99.7 8.8E-14 1.9E-18 174.9 47.8 185 682-911 528-720 (857)
66 PF13429 TPR_15: Tetratricopep 99.7 2E-17 4.2E-22 179.7 12.9 252 633-944 15-277 (280)
67 PF13429 TPR_15: Tetratricopep 99.7 2.4E-17 5.2E-22 179.0 12.6 230 462-746 13-248 (280)
68 KOG1129 TPR repeat-containing 99.7 2.2E-16 4.9E-21 159.7 18.1 242 556-858 226-469 (478)
69 PLN03218 maturation of RBCL 1; 99.7 7.2E-13 1.6E-17 164.4 51.6 469 434-944 384-909 (1060)
70 KOG1125 TPR repeat-containing 99.7 7.7E-16 1.7E-20 168.2 21.8 247 534-837 300-561 (579)
71 COG3063 PilF Tfp pilus assembl 99.7 4.2E-15 9.1E-20 145.1 24.1 206 679-954 36-246 (250)
72 KOG1129 TPR repeat-containing 99.7 3.8E-16 8.3E-21 158.0 16.5 234 458-745 224-462 (478)
73 PF00651 BTB: BTB/POZ domain; 99.7 1.8E-17 3.8E-22 152.8 6.4 105 248-355 3-110 (111)
74 KOG1156 N-terminal acetyltrans 99.7 2.6E-13 5.6E-18 150.0 39.6 433 459-944 9-511 (700)
75 KOG1915 Cell cycle control pro 99.7 1.2E-11 2.6E-16 131.5 49.8 470 453-945 69-586 (677)
76 KOG4682 Uncharacterized conser 99.7 1.5E-16 3.2E-21 164.9 12.7 181 246-434 60-251 (488)
77 KOG0550 Molecular chaperone (D 99.7 1.2E-14 2.6E-19 152.3 26.9 373 453-941 45-440 (486)
78 KOG1125 TPR repeat-containing 99.7 7.8E-16 1.7E-20 168.2 18.2 227 681-947 288-530 (579)
79 KOG1156 N-terminal acetyltrans 99.7 2.6E-13 5.5E-18 150.0 37.7 358 528-952 19-442 (700)
80 TIGR02521 type_IV_pilW type IV 99.7 1.1E-14 2.4E-19 153.0 24.3 200 677-946 30-234 (234)
81 PLN02789 farnesyltranstransfer 99.7 1.5E-14 3.3E-19 156.8 25.6 187 536-746 54-255 (320)
82 TIGR02521 type_IV_pilW type IV 99.7 1.6E-14 3.4E-19 151.7 24.3 197 553-813 31-230 (234)
83 COG2956 Predicted N-acetylgluc 99.6 8.9E-14 1.9E-18 141.5 26.1 244 682-961 39-295 (389)
84 cd05804 StaR_like StaR_like; a 99.6 1.7E-13 3.7E-18 154.7 31.7 315 549-945 2-337 (355)
85 PLN02789 farnesyltranstransfer 99.6 3.6E-14 7.9E-19 153.8 24.4 259 555-889 39-314 (320)
86 KOG2376 Signal recognition par 99.6 7.6E-12 1.7E-16 137.1 40.8 432 466-959 21-502 (652)
87 KOG0783 Uncharacterized conser 99.6 7.1E-16 1.5E-20 171.8 8.1 141 253-396 708-854 (1267)
88 COG3063 PilF Tfp pilus assembl 99.6 1.3E-13 2.8E-18 134.8 22.6 202 588-853 37-242 (250)
89 smart00225 BTB Broad-Complex, 99.6 3.3E-15 7.2E-20 131.6 9.6 90 257-349 1-90 (90)
90 KOG1840 Kinesin light chain [C 99.6 5.6E-13 1.2E-17 150.5 28.9 241 630-942 203-477 (508)
91 KOG1840 Kinesin light chain [C 99.6 4.1E-13 9E-18 151.6 27.3 254 548-847 194-479 (508)
92 COG2956 Predicted N-acetylgluc 99.6 3E-12 6.6E-17 130.5 29.7 259 534-855 50-319 (389)
93 KOG3785 Uncharacterized conser 99.5 3.1E-11 6.7E-16 124.0 30.1 417 459-947 59-493 (557)
94 KOG1915 Cell cycle control pro 99.5 3E-10 6.4E-15 121.1 36.4 385 534-945 88-501 (677)
95 cd05804 StaR_like StaR_like; a 99.5 3.8E-11 8.2E-16 135.5 32.3 307 453-849 2-338 (355)
96 KOG2376 Signal recognition par 99.5 1.8E-10 3.8E-15 126.6 34.4 228 534-818 27-256 (652)
97 TIGR03302 OM_YfiO outer membra 99.4 5.9E-12 1.3E-16 133.0 20.2 175 548-743 28-234 (235)
98 TIGR03302 OM_YfiO outer membra 99.4 6.1E-12 1.3E-16 132.9 20.0 199 675-947 30-235 (235)
99 PF12569 NARP1: NMDA receptor- 99.4 6.3E-10 1.4E-14 127.7 36.5 298 458-848 5-335 (517)
100 COG3071 HemY Uncharacterized e 99.4 1E-09 2.2E-14 115.9 34.7 300 556-945 87-391 (400)
101 PRK14720 transcript cleavage f 99.4 9.9E-11 2.2E-15 139.6 26.5 151 547-739 25-176 (906)
102 KOG3785 Uncharacterized conser 99.4 5.7E-09 1.2E-13 107.6 34.7 402 467-940 32-453 (557)
103 COG3071 HemY Uncharacterized e 99.3 4.6E-09 1E-13 111.1 33.3 305 455-847 82-390 (400)
104 PRK15359 type III secretion sy 99.3 1.9E-11 4.1E-16 117.6 14.2 127 538-691 12-139 (144)
105 KOG0553 TPR repeat-containing 99.3 9.4E-12 2E-16 127.0 11.7 105 862-966 95-200 (304)
106 PRK15359 type III secretion sy 99.3 3.4E-11 7.4E-16 115.8 14.8 126 573-724 13-138 (144)
107 PRK04841 transcriptional regul 99.3 2.4E-09 5.3E-14 136.4 35.9 343 556-950 377-766 (903)
108 KOG2047 mRNA splicing factor [ 99.3 2.2E-07 4.8E-12 103.3 45.1 410 541-963 90-600 (835)
109 KOG1130 Predicted G-alpha GTPa 99.3 3.1E-11 6.8E-16 126.2 14.5 284 559-945 23-345 (639)
110 PRK10370 formate-dependent nit 99.3 1.1E-10 2.3E-15 118.6 18.1 158 793-959 23-188 (198)
111 PF12569 NARP1: NMDA receptor- 99.3 3.7E-08 8E-13 113.3 40.4 281 437-743 18-336 (517)
112 PRK14720 transcript cleavage f 99.3 9.1E-10 2E-14 131.5 27.7 183 581-857 25-208 (906)
113 PRK04841 transcriptional regul 99.3 8.9E-09 1.9E-13 131.3 38.8 382 455-914 339-763 (903)
114 KOG4340 Uncharacterized conser 99.3 7.7E-10 1.7E-14 111.5 22.5 348 536-948 27-447 (459)
115 KOG1130 Predicted G-alpha GTPa 99.3 7.9E-11 1.7E-15 123.3 15.7 285 523-876 24-343 (639)
116 PRK10370 formate-dependent nit 99.2 2.5E-10 5.4E-15 116.0 17.5 116 663-818 58-176 (198)
117 KOG2047 mRNA splicing factor [ 99.2 3E-06 6.5E-11 94.5 49.0 313 587-911 249-615 (835)
118 COG5010 TadD Flp pilus assembl 99.2 1.2E-09 2.6E-14 109.9 18.5 179 536-739 50-229 (257)
119 TIGR02552 LcrH_SycD type III s 99.2 2.6E-10 5.6E-15 109.0 13.3 123 840-962 5-132 (135)
120 PRK15179 Vi polysaccharide bio 99.2 2E-09 4.3E-14 128.2 23.0 153 664-856 72-226 (694)
121 KOG0553 TPR repeat-containing 99.2 1.4E-10 3.1E-15 118.5 11.4 101 520-623 85-186 (304)
122 KOG4340 Uncharacterized conser 99.2 1.8E-08 3.8E-13 101.9 25.5 175 434-615 24-207 (459)
123 PRK15179 Vi polysaccharide bio 99.1 9.5E-10 2.1E-14 130.9 18.4 155 536-714 69-224 (694)
124 KOG3060 Uncharacterized conser 99.1 8.2E-08 1.8E-12 95.6 28.1 214 424-687 17-234 (289)
125 COG5010 TadD Flp pilus assembl 99.1 7.3E-09 1.6E-13 104.3 20.3 142 664-845 86-229 (257)
126 PF04733 Coatomer_E: Coatomer 99.1 2.3E-09 4.9E-14 115.2 17.8 259 688-957 11-278 (290)
127 KOG3060 Uncharacterized conser 99.1 1.8E-08 3.8E-13 100.3 22.2 136 587-746 53-188 (289)
128 KOG1128 Uncharacterized conser 99.1 3.4E-09 7.3E-14 119.5 18.3 218 675-945 395-617 (777)
129 COG4783 Putative Zn-dependent 99.1 1.5E-08 3.2E-13 110.2 22.4 159 805-963 293-456 (484)
130 KOG1128 Uncharacterized conser 99.1 4.4E-09 9.5E-14 118.6 18.4 221 550-849 395-618 (777)
131 TIGR02552 LcrH_SycD type III s 99.1 1.8E-09 3.9E-14 103.2 13.5 118 540-681 4-122 (135)
132 PF04733 Coatomer_E: Coatomer 99.0 9.6E-09 2.1E-13 110.4 18.0 250 465-746 9-270 (290)
133 COG4785 NlpI Lipoprotein NlpI, 99.0 2.9E-08 6.4E-13 96.0 18.0 220 552-836 64-293 (297)
134 COG4783 Putative Zn-dependent 99.0 2E-07 4.2E-12 101.7 24.7 130 584-737 303-433 (484)
135 PRK15363 pathogenicity island 98.9 1.4E-08 3E-13 95.9 13.6 104 672-815 28-132 (157)
136 PRK15363 pathogenicity island 98.9 1.2E-08 2.7E-13 96.2 12.5 98 862-959 49-147 (157)
137 PLN03088 SGT1, suppressor of 98.9 8.6E-09 1.9E-13 114.9 13.2 103 862-964 16-119 (356)
138 PRK10866 outer membrane biogen 98.9 1.3E-07 2.9E-12 99.1 19.9 179 552-738 31-238 (243)
139 PRK10866 outer membrane biogen 98.9 1.5E-07 3.3E-12 98.7 19.7 200 678-941 32-238 (243)
140 COG4785 NlpI Lipoprotein NlpI, 98.8 1.5E-07 3.3E-12 91.2 17.0 197 677-914 64-269 (297)
141 TIGR02795 tol_pal_ybgF tol-pal 98.8 4.9E-08 1.1E-12 90.7 13.7 112 819-957 3-118 (119)
142 PF13525 YfiO: Outer membrane 98.8 9.9E-08 2.1E-12 97.8 16.8 187 678-935 5-198 (203)
143 KOG1941 Acetylcholine receptor 98.8 1.9E-06 4.1E-11 89.8 24.2 312 460-847 9-360 (518)
144 PLN03088 SGT1, suppressor of 98.8 3.8E-08 8.3E-13 109.8 13.0 98 523-623 9-107 (356)
145 KOG4234 TPR repeat-containing 98.8 2.6E-08 5.7E-13 95.1 9.8 117 822-963 99-216 (271)
146 PF13525 YfiO: Outer membrane 98.8 2.5E-07 5.4E-12 94.8 17.9 171 552-732 4-198 (203)
147 KOG4648 Uncharacterized conser 98.7 9.6E-09 2.1E-13 105.5 5.6 235 681-961 100-347 (536)
148 PF14938 SNAP: Soluble NSF att 98.7 3.1E-07 6.6E-12 99.5 17.6 173 718-949 41-230 (282)
149 KOG0543 FKBP-type peptidyl-pro 98.7 6E-08 1.3E-12 103.7 10.6 130 821-965 211-341 (397)
150 PF13414 TPR_11: TPR repeat; P 98.7 4.2E-08 9E-13 81.3 7.3 66 552-617 2-69 (69)
151 PF13414 TPR_11: TPR repeat; P 98.7 6.8E-08 1.5E-12 80.1 8.0 67 677-743 2-69 (69)
152 PRK10153 DNA-binding transcrip 98.7 4.5E-07 9.8E-12 105.2 17.6 146 456-623 338-490 (517)
153 KOG0543 FKBP-type peptidyl-pro 98.7 4.6E-07 9.9E-12 97.1 15.7 144 459-615 210-355 (397)
154 KOG4648 Uncharacterized conser 98.7 2.8E-08 6E-13 102.2 6.1 200 520-746 101-301 (536)
155 KOG1941 Acetylcholine receptor 98.7 1.2E-05 2.6E-10 84.0 25.0 246 556-849 9-277 (518)
156 PRK02603 photosystem I assembl 98.6 4.2E-07 9.2E-12 90.6 14.2 66 678-743 35-103 (172)
157 PF14938 SNAP: Soluble NSF att 98.6 1.1E-06 2.4E-11 95.1 18.1 223 679-962 36-281 (282)
158 KOG0511 Ankyrin repeat protein 98.6 1.2E-07 2.6E-12 98.4 9.4 144 258-404 295-445 (516)
159 PF09976 TPR_21: Tetratricopep 98.6 1.3E-06 2.8E-11 84.4 16.0 120 689-845 22-145 (145)
160 PF13432 TPR_16: Tetratricopep 98.6 1.6E-07 3.5E-12 76.7 8.2 64 557-620 1-65 (65)
161 PF13432 TPR_16: Tetratricopep 98.6 1.8E-07 3.8E-12 76.5 8.1 64 886-949 1-65 (65)
162 PRK11906 transcriptional regul 98.6 2.4E-06 5.2E-11 94.0 19.1 158 556-737 258-432 (458)
163 TIGR02795 tol_pal_ybgF tol-pal 98.6 8.8E-07 1.9E-11 82.2 13.6 107 713-856 3-114 (119)
164 CHL00033 ycf3 photosystem I as 98.6 7.9E-07 1.7E-11 88.4 14.1 114 694-844 15-139 (168)
165 PRK10153 DNA-binding transcrip 98.6 1.6E-06 3.5E-11 100.7 18.6 145 588-749 341-490 (517)
166 KOG3081 Vesicle coat complex C 98.6 1.6E-05 3.5E-10 80.2 22.9 258 688-957 18-284 (299)
167 COG4235 Cytochrome c biogenesi 98.6 1.2E-06 2.5E-11 91.0 15.3 125 834-958 138-270 (287)
168 KOG0783 Uncharacterized conser 98.6 6.6E-08 1.4E-12 109.4 6.7 67 253-321 556-634 (1267)
169 COG0457 NrfG FOG: TPR repeat [ 98.6 4E-05 8.6E-10 79.4 27.5 184 536-743 40-233 (291)
170 KOG2300 Uncharacterized conser 98.6 0.00056 1.2E-08 74.5 35.0 378 554-951 8-480 (629)
171 PRK02603 photosystem I assembl 98.6 1E-06 2.2E-11 87.9 13.9 74 662-735 53-129 (172)
172 KOG3617 WD40 and TPR repeat-co 98.6 0.00022 4.8E-09 81.7 33.3 295 490-843 801-1170(1416)
173 COG4235 Cytochrome c biogenesi 98.6 1.5E-06 3.3E-11 90.2 15.2 120 535-678 138-261 (287)
174 COG0457 NrfG FOG: TPR repeat [ 98.5 9.2E-05 2E-09 76.6 29.0 222 566-850 36-268 (291)
175 PRK10803 tol-pal system protei 98.5 1.5E-06 3.2E-11 91.8 15.1 113 820-959 144-261 (263)
176 cd00189 TPR Tetratricopeptide 98.5 8.2E-07 1.8E-11 77.7 11.1 98 680-817 2-99 (100)
177 KOG3617 WD40 and TPR repeat-co 98.5 7.8E-05 1.7E-09 85.3 28.1 291 591-941 805-1171(1416)
178 CHL00033 ycf3 photosystem I as 98.5 2.4E-06 5.2E-11 84.9 14.9 103 820-949 37-154 (168)
179 COG4700 Uncharacterized protei 98.5 1.4E-05 3.1E-10 76.0 18.6 149 788-964 91-247 (251)
180 PF09976 TPR_21: Tetratricopep 98.5 4E-06 8.7E-11 80.9 15.6 77 536-613 65-145 (145)
181 KOG3616 Selective LIM binding 98.5 0.00078 1.7E-08 76.3 34.6 342 458-849 662-1026(1636)
182 KOG2053 Mitochondrial inherita 98.5 0.0012 2.6E-08 77.4 37.0 400 536-945 26-537 (932)
183 KOG3081 Vesicle coat complex C 98.5 7.1E-05 1.5E-09 75.7 23.5 252 466-746 17-276 (299)
184 PF12895 Apc3: Anaphase-promot 98.5 7E-07 1.5E-11 77.2 8.3 81 691-812 2-84 (84)
185 PF12895 Apc3: Anaphase-promot 98.4 3.7E-07 8E-12 78.9 6.4 78 534-612 4-84 (84)
186 PRK11906 transcriptional regul 98.4 7.7E-06 1.7E-10 90.1 17.7 139 589-744 258-404 (458)
187 COG3898 Uncharacterized membra 98.4 0.00017 3.6E-09 76.4 26.6 281 534-848 99-393 (531)
188 cd00189 TPR Tetratricopeptide 98.4 2.8E-06 6.1E-11 74.2 12.1 24 592-615 6-29 (100)
189 KOG1070 rRNA processing protei 98.4 7.5E-05 1.6E-09 90.4 26.6 225 663-928 1443-1683(1710)
190 PRK15331 chaperone protein Sic 98.4 7.7E-06 1.7E-10 77.7 14.9 116 452-596 32-147 (165)
191 KOG4234 TPR repeat-containing 98.4 4.3E-06 9.3E-11 80.3 13.1 106 456-584 94-199 (271)
192 COG4105 ComL DNA uptake lipopr 98.4 2.3E-05 5E-10 79.8 18.9 203 678-954 34-243 (254)
193 PF13512 TPR_18: Tetratricopep 98.4 4.8E-06 1E-10 77.4 12.9 112 819-957 11-141 (142)
194 KOG2300 Uncharacterized conser 98.4 0.0038 8.1E-08 68.3 36.0 137 785-944 366-514 (629)
195 PRK10803 tol-pal system protei 98.4 4.2E-06 9.1E-11 88.4 13.7 100 679-815 143-246 (263)
196 COG3898 Uncharacterized membra 98.4 0.002 4.4E-08 68.5 32.7 282 462-814 89-391 (531)
197 KOG1070 rRNA processing protei 98.4 6.1E-05 1.3E-09 91.1 24.2 231 694-960 1440-1679(1710)
198 PF13371 TPR_9: Tetratricopept 98.3 1.8E-06 3.8E-11 72.4 8.0 70 889-958 2-72 (73)
199 KOG2053 Mitochondrial inherita 98.3 0.0012 2.6E-08 77.4 32.3 227 565-851 21-259 (932)
200 PF14559 TPR_19: Tetratricopep 98.3 2.2E-06 4.8E-11 70.6 6.9 67 892-958 1-68 (68)
201 KOG4555 TPR repeat-containing 98.3 6.3E-06 1.4E-10 73.5 10.0 88 860-947 55-147 (175)
202 COG1729 Uncharacterized protei 98.3 1.6E-05 3.5E-10 81.7 14.5 112 821-959 144-259 (262)
203 PRK15331 chaperone protein Sic 98.3 1.8E-05 3.9E-10 75.3 13.6 107 579-710 29-136 (165)
204 COG4105 ComL DNA uptake lipopr 98.3 8E-05 1.7E-09 75.9 19.0 179 553-744 34-236 (254)
205 PF10345 Cohesin_load: Cohesin 98.2 0.0067 1.4E-07 73.2 38.9 433 448-942 50-604 (608)
206 KOG2471 TPR repeat-containing 98.2 0.00038 8.2E-09 75.8 24.6 464 455-951 98-693 (696)
207 PF12688 TPR_5: Tetratrico pep 98.2 2.4E-05 5.3E-10 71.7 13.1 97 713-846 2-103 (120)
208 PF12688 TPR_5: Tetratrico pep 98.2 2.8E-05 6E-10 71.3 12.8 100 679-815 2-104 (120)
209 KOG4555 TPR repeat-containing 98.2 3E-05 6.5E-10 69.3 12.2 107 681-823 46-152 (175)
210 PF13371 TPR_9: Tetratricopept 98.2 7.1E-06 1.5E-10 68.7 7.8 64 560-623 2-66 (73)
211 PF14559 TPR_19: Tetratricopep 98.1 4.9E-06 1.1E-10 68.6 6.2 60 564-623 2-62 (68)
212 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 3.4E-05 7.4E-10 85.7 14.5 76 664-739 220-295 (395)
213 KOG2838 Uncharacterized conser 98.1 1.6E-06 3.5E-11 86.2 3.2 110 265-391 261-390 (401)
214 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 4.6E-05 1E-09 84.7 15.1 115 796-941 179-294 (395)
215 PF13512 TPR_18: Tetratricopep 98.1 4.2E-05 9.1E-10 71.2 11.8 118 553-679 10-134 (142)
216 COG1729 Uncharacterized protei 98.1 5.3E-05 1.1E-09 78.0 13.3 106 715-857 144-254 (262)
217 KOG2716 Polymerase delta-inter 98.0 2.9E-05 6.2E-10 78.3 10.4 97 258-357 7-106 (230)
218 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 1.8E-05 3.8E-10 87.2 9.2 68 877-944 70-141 (453)
219 KOG2796 Uncharacterized conser 98.0 0.0037 8.1E-08 63.2 23.3 218 679-915 70-319 (366)
220 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 2.7E-05 5.8E-10 85.8 8.8 68 548-615 70-141 (453)
221 COG4700 Uncharacterized protei 97.9 0.00091 2E-08 64.0 17.5 148 534-739 71-220 (251)
222 PF13424 TPR_12: Tetratricopep 97.9 3.4E-05 7.4E-10 65.5 7.4 64 785-848 4-76 (78)
223 KOG2796 Uncharacterized conser 97.9 0.0009 1.9E-08 67.5 18.1 189 496-711 129-319 (366)
224 PF13424 TPR_12: Tetratricopep 97.9 1.5E-05 3.2E-10 67.8 4.6 74 709-815 2-75 (78)
225 KOG1586 Protein required for f 97.9 0.0017 3.8E-08 64.5 19.3 61 788-849 76-145 (288)
226 KOG0376 Serine-threonine phosp 97.9 2E-05 4.4E-10 86.3 6.1 102 862-963 18-120 (476)
227 KOG3473 RNA polymerase II tran 97.8 8.4E-05 1.8E-09 62.0 7.7 81 258-341 19-112 (112)
228 KOG1914 mRNA cleavage and poly 97.8 0.12 2.6E-06 57.9 37.1 145 802-946 347-503 (656)
229 PF02214 BTB_2: BTB/POZ domain 97.7 3.1E-05 6.8E-10 68.4 4.0 88 258-348 1-94 (94)
230 KOG1586 Protein required for f 97.7 0.003 6.5E-08 62.8 17.6 141 555-714 76-231 (288)
231 PF07079 DUF1347: Protein of u 97.7 0.14 3E-06 56.3 42.1 61 889-953 469-529 (549)
232 KOG4507 Uncharacterized conser 97.7 0.014 3.1E-07 65.2 24.2 98 862-959 621-720 (886)
233 PF06552 TOM20_plant: Plant sp 97.7 0.00022 4.7E-09 68.6 9.1 88 536-623 8-117 (186)
234 PF06552 TOM20_plant: Plant sp 97.7 0.0002 4.2E-09 68.9 8.6 83 834-916 7-114 (186)
235 KOG1987 Speckle-type POZ prote 97.6 3.3E-05 7.2E-10 84.6 3.9 122 264-389 109-233 (297)
236 KOG4642 Chaperone-dependent E3 97.6 0.00013 2.8E-09 72.5 7.5 90 523-615 17-107 (284)
237 KOG2838 Uncharacterized conser 97.6 5.4E-05 1.2E-09 75.6 4.2 68 253-322 128-197 (401)
238 KOG1258 mRNA processing protei 97.6 0.2 4.4E-06 57.2 32.2 391 536-960 62-486 (577)
239 KOG0985 Vesicle coat protein c 97.6 0.36 7.9E-06 57.8 36.0 210 411-645 929-1152(1666)
240 COG4907 Predicted membrane pro 97.5 7E-05 1.5E-09 80.2 4.0 11 9-19 528-538 (595)
241 PF07707 BACK: BTB And C-termi 97.5 7.4E-05 1.6E-09 67.3 3.5 79 362-445 1-87 (103)
242 KOG0545 Aryl-hydrocarbon recep 97.5 0.0019 4.1E-08 64.6 13.3 120 458-623 179-301 (329)
243 KOG0376 Serine-threonine phosp 97.5 0.00015 3.3E-09 79.6 6.0 90 534-623 19-109 (476)
244 PF10345 Cohesin_load: Cohesin 97.5 0.31 6.7E-06 59.0 35.0 112 789-900 304-467 (608)
245 PF04184 ST7: ST7 protein; In 97.5 0.0076 1.7E-07 66.9 18.7 187 684-887 174-385 (539)
246 KOG1585 Protein required for f 97.4 0.014 2.9E-07 58.7 18.4 124 684-842 116-251 (308)
247 KOG2610 Uncharacterized conser 97.4 0.0044 9.5E-08 64.7 14.8 150 793-942 110-274 (491)
248 KOG0985 Vesicle coat protein c 97.4 0.62 1.3E-05 56.0 34.6 229 676-941 1102-1338(1666)
249 KOG1914 mRNA cleavage and poly 97.4 0.41 8.9E-06 53.8 38.4 381 543-944 10-464 (656)
250 PF10300 DUF3808: Protein of u 97.4 0.094 2E-06 60.9 27.3 147 799-945 201-377 (468)
251 KOG0890 Protein kinase of the 97.4 0.23 5E-06 65.0 32.3 108 782-889 1666-1796(2382)
252 PF13431 TPR_17: Tetratricopep 97.3 0.00018 3.9E-09 49.7 3.0 33 542-574 2-34 (34)
253 PF13428 TPR_14: Tetratricopep 97.3 0.00041 8.8E-09 51.4 5.1 42 916-957 2-43 (44)
254 KOG1550 Extracellular protein 97.3 0.086 1.9E-06 62.7 27.0 281 472-879 227-540 (552)
255 KOG0545 Aryl-hydrocarbon recep 97.3 0.0029 6.2E-08 63.3 12.0 75 878-952 226-301 (329)
256 COG2976 Uncharacterized protei 97.3 0.0097 2.1E-07 58.0 15.3 149 716-914 35-191 (207)
257 PF04184 ST7: ST7 protein; In 97.3 0.025 5.5E-07 62.9 20.4 201 465-682 176-384 (539)
258 KOG2471 TPR repeat-containing 97.3 0.0092 2E-07 65.4 16.6 145 683-859 211-376 (696)
259 PF05843 Suf: Suppressor of fo 97.3 0.002 4.3E-08 69.5 11.9 140 788-957 3-149 (280)
260 PF13431 TPR_17: Tetratricopep 97.3 0.00017 3.8E-09 49.8 2.2 32 871-902 2-33 (34)
261 KOG1585 Protein required for f 97.3 0.11 2.4E-06 52.5 22.4 220 449-737 23-252 (308)
262 KOG1308 Hsp70-interacting prot 97.2 0.00036 7.8E-09 73.2 5.3 84 862-945 128-212 (377)
263 KOG4642 Chaperone-dependent E3 97.2 0.001 2.2E-08 66.3 8.1 80 664-743 30-109 (284)
264 KOG2610 Uncharacterized conser 97.2 0.018 3.8E-07 60.4 17.2 167 588-814 105-275 (491)
265 PF14853 Fis1_TPR_C: Fis1 C-te 97.2 0.0012 2.6E-08 50.5 6.5 49 916-964 2-50 (53)
266 PF02259 FAT: FAT domain; Int 97.2 0.065 1.4E-06 60.1 23.7 267 679-947 30-341 (352)
267 KOG3616 Selective LIM binding 97.2 0.71 1.5E-05 53.4 39.7 51 862-914 977-1027(1636)
268 COG2976 Uncharacterized protei 97.2 0.02 4.3E-07 56.0 16.0 140 416-618 52-191 (207)
269 COG3118 Thioredoxin domain-con 97.2 0.017 3.7E-07 60.2 16.7 160 554-737 135-297 (304)
270 PF13281 DUF4071: Domain of un 97.2 0.034 7.4E-07 61.1 19.6 166 786-952 141-342 (374)
271 PF13428 TPR_14: Tetratricopep 97.1 0.00085 1.8E-08 49.6 4.9 43 678-720 1-43 (44)
272 PF05843 Suf: Suppressor of fo 97.1 0.024 5.2E-07 61.2 17.8 140 680-859 3-148 (280)
273 PF00515 TPR_1: Tetratricopept 97.1 0.0009 2E-08 46.3 4.4 32 917-948 3-34 (34)
274 PF07719 TPR_2: Tetratricopept 97.1 0.0011 2.5E-08 45.7 4.7 33 916-948 2-34 (34)
275 PF00515 TPR_1: Tetratricopept 97.0 0.0011 2.5E-08 45.7 4.6 33 587-619 2-34 (34)
276 COG3118 Thioredoxin domain-con 97.0 0.047 1E-06 57.0 17.9 150 461-610 138-296 (304)
277 KOG3364 Membrane protein invol 97.0 0.006 1.3E-07 55.5 10.0 83 882-964 32-120 (149)
278 KOG0551 Hsp90 co-chaperone CNS 97.0 0.0031 6.8E-08 66.0 9.4 103 518-623 83-190 (390)
279 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.81 1.8E-05 50.3 33.5 439 445-914 30-534 (660)
280 COG2909 MalT ATP-dependent tra 97.0 1.4 3E-05 53.0 35.6 270 455-742 345-648 (894)
281 PF07719 TPR_2: Tetratricopept 97.0 0.0017 3.6E-08 44.8 4.8 34 586-619 1-34 (34)
282 PF13281 DUF4071: Domain of un 96.9 0.12 2.6E-06 56.9 20.5 97 631-745 146-259 (374)
283 KOG0551 Hsp90 co-chaperone CNS 96.8 0.021 4.4E-07 60.1 13.6 87 553-645 81-172 (390)
284 smart00875 BACK BTB And C-term 96.8 0.0025 5.4E-08 56.9 6.0 66 362-432 1-74 (101)
285 KOG1308 Hsp70-interacting prot 96.7 0.0027 5.9E-08 66.9 6.4 113 464-604 121-233 (377)
286 COG2909 MalT ATP-dependent tra 96.7 0.84 1.8E-05 54.7 27.2 209 678-945 415-648 (894)
287 KOG0530 Protein farnesyltransf 96.7 0.33 7.1E-06 49.7 20.7 174 599-798 56-233 (318)
288 KOG0530 Protein farnesyltransf 96.7 0.35 7.6E-06 49.5 20.8 225 691-955 56-309 (318)
289 KOG1550 Extracellular protein 96.7 0.37 8.1E-06 57.3 25.3 273 663-948 231-542 (552)
290 PF02259 FAT: FAT domain; Int 96.7 0.59 1.3E-05 52.3 25.6 145 674-830 142-304 (352)
291 COG0790 FOG: TPR repeat, SEL1 96.7 0.29 6.2E-06 53.4 22.3 157 788-948 75-270 (292)
292 PF10300 DUF3808: Protein of u 96.6 0.061 1.3E-06 62.4 17.4 114 662-814 251-375 (468)
293 smart00512 Skp1 Found in Skp1 96.5 0.01 2.2E-07 53.4 7.8 82 257-341 3-104 (104)
294 PRK10941 hypothetical protein; 96.3 0.028 6.2E-07 59.5 10.8 82 884-965 183-265 (269)
295 PF08631 SPO22: Meiosis protei 96.3 1.4 3.1E-05 47.4 24.3 160 564-739 4-184 (278)
296 PF13181 TPR_8: Tetratricopept 96.3 0.0063 1.4E-07 41.9 3.9 32 917-948 3-34 (34)
297 PRK13184 pknD serine/threonine 96.2 2.3 4.9E-05 53.1 28.0 98 523-623 482-589 (932)
298 PLN03138 Protein TOC75; Provis 96.2 0.0042 9.1E-08 74.1 4.5 11 256-266 215-226 (796)
299 COG0790 FOG: TPR repeat, SEL1 96.2 0.49 1.1E-05 51.5 20.6 176 690-914 53-269 (292)
300 KOG2041 WD40 repeat protein [G 96.2 3.7 8E-05 47.7 30.6 164 440-645 724-897 (1189)
301 PF11822 DUF3342: Domain of un 96.1 0.0078 1.7E-07 63.6 5.0 92 264-357 13-105 (317)
302 KOG3783 Uncharacterized conser 96.0 3.9 8.5E-05 46.6 34.9 127 497-623 198-340 (546)
303 PF13181 TPR_8: Tetratricopept 96.0 0.011 2.4E-07 40.7 4.1 32 587-618 2-33 (34)
304 KOG3915 Transcription regulato 96.0 0.019 4.2E-07 61.9 7.4 8 142-149 195-202 (641)
305 KOG2714 SETA binding protein S 95.9 0.021 4.6E-07 61.8 7.7 85 258-346 13-102 (465)
306 KOG1665 AFH1-interacting prote 95.9 0.021 4.6E-07 56.0 6.9 93 255-350 8-105 (302)
307 PF03704 BTAD: Bacterial trans 95.8 0.22 4.8E-06 47.8 13.8 113 591-739 11-123 (146)
308 PF03704 BTAD: Bacterial trans 95.8 0.19 4.1E-06 48.3 13.2 61 554-614 63-124 (146)
309 PF13174 TPR_6: Tetratricopept 95.7 0.016 3.6E-07 39.4 3.8 32 917-948 2-33 (33)
310 PF03931 Skp1_POZ: Skp1 family 95.7 0.053 1.2E-06 43.4 7.3 55 258-317 3-58 (62)
311 PF13176 TPR_7: Tetratricopept 95.6 0.02 4.3E-07 40.1 4.1 28 459-486 1-28 (36)
312 PF14561 TPR_20: Tetratricopep 95.6 0.12 2.6E-06 44.9 9.6 77 537-613 6-85 (90)
313 KOG0890 Protein kinase of the 95.5 4.7 0.0001 53.7 27.1 67 878-945 1666-1732(2382)
314 KOG1724 SCF ubiquitin ligase, 95.4 0.11 2.4E-06 50.0 9.8 92 263-357 13-128 (162)
315 KOG0511 Ankyrin repeat protein 95.4 0.018 3.9E-07 60.9 4.8 87 254-345 148-235 (516)
316 PF12968 DUF3856: Domain of Un 95.4 0.17 3.6E-06 45.2 9.8 106 457-581 7-128 (144)
317 PF13174 TPR_6: Tetratricopept 95.4 0.028 6.1E-07 38.2 4.2 32 587-618 1-32 (33)
318 PF08631 SPO22: Meiosis protei 95.4 4.4 9.5E-05 43.7 23.3 227 688-942 3-273 (278)
319 COG5107 RNA14 Pre-mRNA 3'-end 95.4 5.8 0.00013 44.0 30.0 120 830-949 409-536 (660)
320 PF07079 DUF1347: Protein of u 95.3 6 0.00013 44.1 24.1 54 559-612 468-521 (549)
321 PF10961 DUF2763: Protein of u 95.3 0.045 9.7E-07 47.1 6.0 9 12-20 35-43 (91)
322 PF14853 Fis1_TPR_C: Fis1 C-te 95.2 0.075 1.6E-06 40.7 6.3 37 587-623 2-38 (53)
323 PF04910 Tcf25: Transcriptiona 95.2 1.1 2.3E-05 50.2 18.1 78 546-623 33-141 (360)
324 KOG3824 Huntingtin interacting 95.0 0.059 1.3E-06 55.8 6.8 62 893-954 127-189 (472)
325 PRK13184 pknD serine/threonine 94.8 13 0.00027 46.8 27.3 136 593-743 482-622 (932)
326 PF13176 TPR_7: Tetratricopept 94.8 0.045 9.9E-07 38.3 3.8 25 918-942 2-26 (36)
327 PF08424 NRDE-2: NRDE-2, neces 94.7 0.84 1.8E-05 50.3 15.7 83 664-746 5-99 (321)
328 PF11207 DUF2989: Protein of u 94.6 0.46 9.9E-06 47.3 11.7 81 651-732 113-198 (203)
329 PF12968 DUF3856: Domain of Un 94.5 0.77 1.7E-05 41.1 11.5 101 787-910 8-128 (144)
330 PF08424 NRDE-2: NRDE-2, neces 94.5 2.1 4.6E-05 47.2 18.1 86 538-623 4-102 (321)
331 PF14561 TPR_20: Tetratricopep 94.5 0.22 4.8E-06 43.2 8.2 49 867-915 7-55 (90)
332 PF09986 DUF2225: Uncharacteri 94.4 0.56 1.2E-05 48.1 12.5 97 691-814 90-193 (214)
333 PLN03138 Protein TOC75; Provis 94.4 0.025 5.3E-07 67.8 2.8 18 112-129 124-141 (796)
334 PF05918 API5: Apoptosis inhib 94.3 0.012 2.5E-07 67.8 0.0 11 4-14 432-442 (556)
335 COG4649 Uncharacterized protei 94.3 1.2 2.7E-05 42.8 13.1 50 877-926 162-211 (221)
336 PF04910 Tcf25: Transcriptiona 94.2 1.5 3.1E-05 49.1 16.2 146 578-744 31-225 (360)
337 PF04781 DUF627: Protein of un 94.2 0.94 2E-05 40.4 11.5 45 571-615 62-107 (111)
338 PRK10941 hypothetical protein; 94.2 0.28 6.1E-06 52.0 9.9 68 556-623 184-252 (269)
339 PRK11619 lytic murein transgly 94.1 19 0.0004 43.7 40.2 138 796-941 322-465 (644)
340 KOG1464 COP9 signalosome, subu 94.0 0.78 1.7E-05 47.0 12.1 49 691-739 40-92 (440)
341 KOG3824 Huntingtin interacting 94.0 0.15 3.2E-06 53.0 7.0 66 825-890 123-192 (472)
342 COG5201 SKP1 SCF ubiquitin lig 93.6 0.44 9.6E-06 42.7 8.2 97 256-357 2-123 (158)
343 KOG1464 COP9 signalosome, subu 93.5 3 6.5E-05 43.0 15.1 115 683-832 150-286 (440)
344 PF09986 DUF2225: Uncharacteri 93.5 0.96 2.1E-05 46.4 12.1 95 797-914 88-197 (214)
345 KOG4507 Uncharacterized conser 93.4 0.24 5.3E-06 55.8 8.0 91 534-624 622-714 (886)
346 PF04781 DUF627: Protein of un 93.4 0.98 2.1E-05 40.3 10.2 105 824-944 2-107 (111)
347 smart00028 TPR Tetratricopepti 93.3 0.13 2.9E-06 33.8 4.0 31 917-947 3-33 (34)
348 KOG1463 26S proteasome regulat 93.3 14 0.0003 39.7 21.1 267 557-879 8-318 (411)
349 KOG3364 Membrane protein invol 93.1 0.58 1.3E-05 43.0 8.5 71 553-623 32-108 (149)
350 smart00028 TPR Tetratricopepti 93.0 0.17 3.6E-06 33.3 4.1 31 588-618 3-33 (34)
351 KOG2396 HAT (Half-A-TPR) repea 93.0 19 0.00042 40.8 40.3 87 879-966 457-547 (568)
352 COG5159 RPN6 26S proteasome re 92.9 14 0.0003 38.7 19.1 51 557-607 7-66 (421)
353 COG4976 Predicted methyltransf 92.7 0.22 4.8E-06 49.8 5.7 61 892-952 5-66 (287)
354 KOG2041 WD40 repeat protein [G 92.7 26 0.00055 41.2 33.5 194 445-703 681-877 (1189)
355 PF10961 DUF2763: Protein of u 92.5 0.39 8.4E-06 41.5 6.3 14 8-21 34-47 (91)
356 KOG3807 Predicted membrane pro 92.4 7.7 0.00017 41.2 16.5 189 682-887 188-401 (556)
357 COG1747 Uncharacterized N-term 92.2 14 0.0003 41.8 19.1 255 340-623 29-296 (711)
358 KOG1310 WD40 repeat protein [G 92.1 0.42 9E-06 53.5 7.4 82 833-914 389-477 (758)
359 KOG1310 WD40 repeat protein [G 91.9 0.57 1.2E-05 52.4 8.2 86 536-621 391-480 (758)
360 COG3914 Spy Predicted O-linked 91.9 3.1 6.6E-05 47.8 14.0 126 833-958 46-185 (620)
361 PF13374 TPR_10: Tetratricopep 91.8 0.32 6.8E-06 34.9 4.4 30 457-486 2-31 (42)
362 KOG2715 Uncharacterized conser 91.7 0.66 1.4E-05 43.7 7.2 100 254-356 19-122 (210)
363 KOG1538 Uncharacterized conser 91.3 19 0.00041 41.8 19.2 51 682-740 751-801 (1081)
364 COG4649 Uncharacterized protei 91.2 8.7 0.00019 37.2 14.1 140 563-723 68-211 (221)
365 KOG1463 26S proteasome regulat 91.1 25 0.00054 37.9 20.1 241 458-743 49-318 (411)
366 PF10602 RPN7: 26S proteasome 90.5 4 8.7E-05 40.6 12.2 64 454-517 33-101 (177)
367 PF09613 HrpB1_HrpK: Bacterial 90.5 1.7 3.7E-05 41.7 9.0 70 534-603 25-95 (160)
368 PF04190 DUF410: Protein of un 90.4 27 0.00059 37.1 19.3 166 469-707 2-170 (260)
369 COG5159 RPN6 26S proteasome re 90.3 26 0.00056 36.8 21.3 251 462-743 8-316 (421)
370 COG4371 Predicted membrane pro 90.2 0.5 1.1E-05 47.4 5.2 11 180-190 214-224 (334)
371 KOG0546 HSP90 co-chaperone CPR 90.1 0.35 7.6E-06 51.8 4.4 130 824-964 228-358 (372)
372 KOG2422 Uncharacterized conser 90.1 11 0.00024 43.3 16.1 149 798-946 250-450 (665)
373 KOG1920 IkappaB kinase complex 90.1 26 0.00056 44.0 20.2 21 792-812 958-978 (1265)
374 PF09613 HrpB1_HrpK: Bacterial 90.1 8.9 0.00019 37.0 13.4 64 683-746 15-78 (160)
375 KOG1778 CREB binding protein/P 90.0 0.16 3.4E-06 54.7 1.8 145 257-404 28-173 (319)
376 PF11207 DUF2989: Protein of u 89.8 11 0.00023 37.8 14.2 93 841-935 100-198 (203)
377 PRK15180 Vi polysaccharide bio 89.8 2.3 5.1E-05 47.1 10.3 89 534-622 304-393 (831)
378 COG4976 Predicted methyltransf 89.4 0.56 1.2E-05 47.1 4.8 58 688-745 5-62 (287)
379 KOG3783 Uncharacterized conser 89.3 47 0.001 38.3 26.9 249 664-959 253-535 (546)
380 PF13374 TPR_10: Tetratricopep 89.0 0.55 1.2E-05 33.6 3.6 28 787-814 3-30 (42)
381 KOG2758 Translation initiation 88.6 38 0.00082 36.2 21.7 257 687-961 44-334 (432)
382 PF10602 RPN7: 26S proteasome 88.2 8.4 0.00018 38.3 12.5 90 554-645 37-132 (177)
383 PRK15180 Vi polysaccharide bio 88.1 2.4 5.2E-05 47.0 9.0 157 563-743 299-459 (831)
384 COG2912 Uncharacterized conser 88.0 2.3 5E-05 44.5 8.5 75 887-961 186-261 (269)
385 KOG1538 Uncharacterized conser 88.0 25 0.00054 40.9 16.9 180 716-908 636-830 (1081)
386 KOG3074 Transcriptional regula 87.6 0.35 7.6E-06 48.0 2.2 18 253-270 175-193 (263)
387 KOG0529 Protein geranylgeranyl 87.6 13 0.00029 41.0 14.2 169 536-724 46-241 (421)
388 COG1747 Uncharacterized N-term 87.5 40 0.00087 38.4 17.8 154 442-597 84-250 (711)
389 PF04094 DUF390: Protein of un 87.4 2.7 5.9E-05 49.0 9.3 13 8-20 49-61 (828)
390 KOG2422 Uncharacterized conser 87.3 34 0.00074 39.5 17.5 139 583-743 280-450 (665)
391 KOG1839 Uncharacterized protei 86.8 4.7 0.0001 50.8 11.6 68 779-846 1050-1127(1236)
392 TIGR02561 HrpB1_HrpK type III 86.6 3.8 8.3E-05 38.7 8.3 70 534-603 25-95 (153)
393 PF10516 SHNi-TPR: SHNi-TPR; 86.5 1.3 2.8E-05 31.3 3.9 29 587-615 2-30 (38)
394 COG3914 Spy Predicted O-linked 86.3 14 0.0003 42.8 13.9 37 685-721 149-185 (620)
395 KOG3807 Predicted membrane pro 86.3 51 0.0011 35.3 17.5 132 466-604 193-329 (556)
396 PF10516 SHNi-TPR: SHNi-TPR; 86.2 1 2.2E-05 31.8 3.3 29 458-486 2-30 (38)
397 COG2912 Uncharacterized conser 86.0 3.1 6.7E-05 43.6 8.2 74 630-721 185-258 (269)
398 PF01466 Skp1: Skp1 family, di 85.9 1.5 3.2E-05 36.9 4.8 50 323-372 10-61 (78)
399 KOG1258 mRNA processing protei 85.7 79 0.0017 37.0 39.1 177 711-892 296-485 (577)
400 KOG1839 Uncharacterized protei 85.2 6.9 0.00015 49.4 11.9 164 555-742 934-1129(1236)
401 PF12862 Apc5: Anaphase-promot 84.4 3.7 7.9E-05 36.0 6.9 58 561-618 6-73 (94)
402 PF12862 Apc5: Anaphase-promot 84.3 3.7 8.1E-05 35.9 6.9 57 687-743 7-72 (94)
403 KOG2396 HAT (Half-A-TPR) repea 83.9 86 0.0019 35.9 34.1 55 536-590 122-178 (568)
404 PF10255 Paf67: RNA polymerase 82.1 68 0.0015 36.2 17.1 71 489-581 122-192 (404)
405 PF10579 Rapsyn_N: Rapsyn N-te 81.9 7.5 0.00016 32.4 7.1 58 887-944 11-72 (80)
406 KOG1456 Heterogeneous nuclear 81.8 1.2 2.7E-05 47.4 3.2 10 306-315 335-344 (494)
407 KOG4814 Uncharacterized conser 81.8 13 0.00027 43.3 11.2 103 587-707 355-457 (872)
408 PF04053 Coatomer_WDAD: Coatom 81.7 58 0.0013 37.6 17.0 129 562-739 270-400 (443)
409 KOG3840 Uncharaterized conserv 81.0 2.1 4.6E-05 44.4 4.5 86 256-342 96-185 (438)
410 COG4455 ImpE Protein of avirul 80.6 6.2 0.00013 39.7 7.3 68 891-958 10-78 (273)
411 KOG0529 Protein geranylgeranyl 80.5 47 0.001 37.0 14.6 47 868-914 95-143 (421)
412 PF07720 TPR_3: Tetratricopept 80.4 4.9 0.00011 28.1 4.8 32 587-618 2-35 (36)
413 PF04053 Coatomer_WDAD: Coatom 80.4 43 0.00093 38.6 15.3 101 796-909 271-374 (443)
414 KOG0686 COP9 signalosome, subu 80.1 26 0.00057 38.7 12.4 51 457-507 150-205 (466)
415 PF04190 DUF410: Protein of un 79.9 54 0.0012 34.8 15.0 26 816-841 88-113 (260)
416 COG4941 Predicted RNA polymera 79.9 90 0.0019 33.8 15.8 79 881-960 328-410 (415)
417 COG4371 Predicted membrane pro 79.1 2.2 4.8E-05 42.9 3.8 9 140-148 177-185 (334)
418 PF00244 14-3-3: 14-3-3 protei 78.8 55 0.0012 34.2 14.4 61 556-616 4-67 (236)
419 PF07721 TPR_4: Tetratricopept 78.7 2.8 6E-05 26.7 3.0 23 714-736 3-25 (26)
420 KOG2114 Vacuolar assembly/sort 78.5 1.3E+02 0.0028 36.7 18.2 251 686-954 342-600 (933)
421 PRK11619 lytic murein transgly 78.3 1.7E+02 0.0037 35.7 34.9 126 556-710 36-161 (644)
422 KOG4462 WASP-interacting prote 78.1 6.3 0.00014 42.0 6.9 10 15-24 32-41 (437)
423 COG3014 Uncharacterized protei 78.1 85 0.0018 34.0 15.0 109 820-948 127-246 (449)
424 PF10579 Rapsyn_N: Rapsyn N-te 77.6 12 0.00026 31.2 6.9 61 682-742 10-73 (80)
425 KOG0105 Alternative splicing f 77.3 2.5 5.5E-05 40.6 3.4 7 155-161 177-183 (241)
426 PF07721 TPR_4: Tetratricopept 76.7 3.7 8E-05 26.1 3.1 22 918-939 4-25 (26)
427 PRK12798 chemotaxis protein; R 76.4 1.4E+02 0.003 33.6 22.6 236 685-962 87-344 (421)
428 TIGR03601 B_an_ocin probable h 76.1 2.3 5E-05 33.4 2.3 14 7-20 2-15 (79)
429 KOG0037 Ca2+-binding protein, 75.9 2.5 5.4E-05 42.3 3.2 50 111-160 56-106 (221)
430 COG3629 DnrI DNA-binding trans 75.7 10 0.00023 40.3 7.9 63 553-615 153-216 (280)
431 KOG0128 RNA-binding protein SA 75.1 2.1E+02 0.0045 35.0 33.1 268 441-744 97-379 (881)
432 KOG4151 Myosin assembly protei 74.9 7.3 0.00016 46.5 7.1 83 880-962 89-174 (748)
433 KOG0128 RNA-binding protein SA 74.7 2.1E+02 0.0046 34.9 24.3 267 567-885 93-384 (881)
434 PF15015 NYD-SP12_N: Spermatog 73.1 26 0.00055 38.9 10.0 52 588-645 230-281 (569)
435 PF15015 NYD-SP12_N: Spermatog 72.7 66 0.0014 35.8 12.9 94 593-704 183-288 (569)
436 PF07720 TPR_3: Tetratricopept 72.2 10 0.00023 26.4 4.6 30 918-947 4-35 (36)
437 TIGR02561 HrpB1_HrpK type III 72.0 89 0.0019 29.8 12.1 53 675-727 41-93 (153)
438 KOG2581 26S proteasome regulat 71.5 1.1E+02 0.0023 34.1 14.1 52 795-846 135-197 (493)
439 COG5191 Uncharacterized conser 71.4 8.3 0.00018 40.7 5.8 82 877-958 102-185 (435)
440 KOG4521 Nuclear pore complex, 71.3 1.5E+02 0.0033 37.5 16.7 133 455-603 918-1071(1480)
441 TIGR03504 FimV_Cterm FimV C-te 71.1 14 0.0003 27.2 5.3 24 920-943 4-27 (44)
442 KOG1596 Fibrillarin and relate 70.9 4.7 0.0001 41.0 3.7 11 179-189 128-138 (317)
443 COG3629 DnrI DNA-binding trans 70.8 32 0.00069 36.7 10.1 62 679-740 154-215 (280)
444 PF11846 DUF3366: Domain of un 70.3 16 0.00035 36.8 7.7 53 897-949 126-178 (193)
445 COG5191 Uncharacterized conser 69.8 6.3 0.00014 41.6 4.5 83 541-623 95-179 (435)
446 PF10373 EST1_DNA_bind: Est1 D 68.8 19 0.00041 38.5 8.5 61 538-598 1-62 (278)
447 PF04285 DUF444: Protein of un 68.4 6.5 0.00014 44.3 4.7 7 256-262 246-252 (421)
448 KOG2723 Uncharacterized conser 68.3 12 0.00027 38.0 6.1 98 254-355 6-109 (221)
449 KOG0546 HSP90 co-chaperone CPR 67.3 11 0.00024 40.8 5.8 60 664-723 295-354 (372)
450 smart00386 HAT HAT (Half-A-TPR 66.8 12 0.00026 24.6 4.1 31 929-959 1-31 (33)
451 COG3014 Uncharacterized protei 66.3 1.9E+02 0.0041 31.5 14.3 45 815-859 210-254 (449)
452 KOG3293 Small nuclear ribonucl 65.6 5.3 0.00011 35.4 2.5 10 2-11 68-77 (134)
453 KOG1920 IkappaB kinase complex 65.5 3.9E+02 0.0084 34.3 23.7 55 685-739 959-1026(1265)
454 PTZ00110 helicase; Provisional 64.4 6.1 0.00013 47.1 3.8 23 182-205 158-180 (545)
455 PF14863 Alkyl_sulf_dimr: Alky 64.1 37 0.00079 32.2 8.1 58 908-965 63-120 (141)
456 COG4455 ImpE Protein of avirul 63.9 71 0.0015 32.5 10.1 63 561-623 9-72 (273)
457 TIGR03504 FimV_Cterm FimV C-te 63.1 13 0.00029 27.3 3.8 25 557-581 3-27 (44)
458 KOG2581 26S proteasome regulat 63.0 2.6E+02 0.0056 31.3 18.7 132 687-852 135-281 (493)
459 PF10373 EST1_DNA_bind: Est1 D 62.9 22 0.00048 38.0 7.5 61 867-927 1-62 (278)
460 KOG3570 MAPK-activating protei 60.8 10 0.00023 45.1 4.5 18 122-139 188-205 (1588)
461 cd02682 MIT_AAA_Arch MIT: doma 60.2 56 0.0012 27.2 7.4 24 789-812 9-32 (75)
462 PF08311 Mad3_BUB1_I: Mad3/BUB 59.9 1.3E+02 0.0027 28.0 10.9 42 804-845 81-126 (126)
463 COG3947 Response regulator con 59.2 27 0.00059 36.8 6.7 58 556-613 282-340 (361)
464 KOG4462 WASP-interacting prote 58.8 41 0.0009 36.1 8.0 104 6-109 31-137 (437)
465 PF06682 DUF1183: Protein of u 58.8 18 0.00038 39.2 5.6 74 9-82 163-236 (318)
466 PF12739 TRAPPC-Trs85: ER-Golg 58.5 2.4E+02 0.0051 32.4 15.1 167 589-813 211-397 (414)
467 PF04097 Nic96: Nup93/Nic96; 58.2 1.9E+02 0.0042 35.0 15.0 242 309-579 274-531 (613)
468 PRK05325 hypothetical protein; 58.0 9.6 0.00021 42.6 3.5 30 34-63 54-95 (401)
469 PF11817 Foie-gras_1: Foie gra 57.3 2.5E+02 0.0055 29.5 14.9 199 588-845 12-245 (247)
470 PTZ00234 variable surface prot 57.0 61 0.0013 37.0 9.7 129 7-136 214-361 (433)
471 PRK10930 FtsH protease regulat 56.8 7.9 0.00017 44.0 2.7 26 39-64 53-78 (419)
472 KOG0276 Vesicle coat complex C 56.8 88 0.0019 36.5 10.6 109 679-843 615-746 (794)
473 PHA03249 DNA packaging tegumen 56.1 27 0.00058 40.4 6.5 90 24-119 48-137 (653)
474 PRK06341 single-stranded DNA-b 55.9 16 0.00035 35.6 4.3 44 34-77 115-158 (166)
475 PF04285 DUF444: Protein of un 55.4 16 0.00034 41.3 4.7 42 24-65 69-110 (421)
476 PF05642 Sporozoite_P67: Sporo 55.3 44 0.00095 38.3 7.9 95 20-114 190-329 (727)
477 PRK05325 hypothetical protein; 54.9 14 0.0003 41.4 4.2 37 23-59 58-94 (401)
478 KOG0037 Ca2+-binding protein, 54.8 48 0.001 33.5 7.3 100 40-183 1-101 (221)
479 KOG3570 MAPK-activating protei 54.5 13 0.00028 44.4 3.9 46 37-82 106-151 (1588)
480 KOG4814 Uncharacterized conser 54.4 4.4E+02 0.0096 31.4 29.2 384 303-741 34-457 (872)
481 PF10255 Paf67: RNA polymerase 54.3 27 0.00058 39.4 6.2 60 554-613 123-191 (404)
482 PRK06341 single-stranded DNA-b 54.0 18 0.00039 35.3 4.3 45 37-81 115-159 (166)
483 KOG2075 Topoisomerase TOP1-int 53.7 26 0.00057 39.4 5.9 88 356-445 185-275 (521)
484 PF11822 DUF3342: Domain of un 53.3 10 0.00022 40.8 2.6 89 356-446 72-163 (317)
485 KOG3590 Protein kinase A ancho 52.8 10 0.00023 41.3 2.6 45 19-63 55-99 (602)
486 cd02682 MIT_AAA_Arch MIT: doma 52.7 84 0.0018 26.2 7.3 62 455-571 4-65 (75)
487 PF10917 DUF2708: Protein of u 52.6 11 0.00024 26.7 1.8 22 36-57 15-36 (43)
488 PRK04537 ATP-dependent RNA hel 52.6 36 0.00078 40.9 7.5 80 33-112 429-508 (572)
489 KOG2114 Vacuolar assembly/sort 52.2 5.4E+02 0.012 31.7 26.5 339 561-943 342-764 (933)
490 PF02064 MAS20: MAS20 protein 51.9 33 0.00073 31.5 5.4 40 919-958 67-106 (121)
491 COG3947 Response regulator con 51.6 46 0.001 35.2 6.9 58 680-737 281-338 (361)
492 PF05611 DUF780: Caenorhabditi 51.5 23 0.00051 27.7 3.6 47 19-65 10-56 (71)
493 PF00651 BTB: BTB/POZ domain; 51.2 19 0.00042 32.1 3.9 31 358-388 80-110 (111)
494 PF09670 Cas_Cas02710: CRISPR- 51.1 1.2E+02 0.0027 34.2 11.0 132 590-741 135-270 (379)
495 PRK12798 chemotaxis protein; R 50.7 4.2E+02 0.0091 30.0 21.5 250 439-737 63-320 (421)
496 PF12854 PPR_1: PPR repeat 50.4 37 0.0008 23.1 4.2 30 911-940 3-32 (34)
497 PF12854 PPR_1: PPR repeat 50.1 36 0.00079 23.2 4.2 31 581-611 2-32 (34)
498 PF04228 Zn_peptidase: Putativ 49.8 13 0.00027 40.1 2.7 30 31-60 9-38 (292)
499 PF09670 Cas_Cas02710: CRISPR- 49.2 3.5E+02 0.0076 30.5 14.3 133 678-847 131-270 (379)
500 KOG4014 Uncharacterized conser 48.7 2.8E+02 0.0061 27.5 15.3 156 629-847 38-233 (248)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=9e-44 Score=381.51 Aligned_cols=429 Identities=17% Similarity=0.133 Sum_probs=391.2
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHhCch--hHHHHHHHHHHhcCChHHHH-------HHHHHHHhccCcchhHHHH
Q 002100 458 LAFHQLGVVMLEREEYKDAQNWFKAAVEAGHI--YSLVGVARTKFKRGHKYSAY-------KLMNSLISDYTPVGWMYQE 528 (967)
Q Consensus 458 ~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~--~a~~~la~~~~~~g~~~~A~-------~~l~~~i~~~~~~g~~~~~ 528 (967)
.....|+.-.++-|+|++|++....+-..+|. .....+..+++...+.+... +.-.+..+.|.+.++++.+
T Consensus 49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 49 DDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 34667888899999999999999988888773 23334455555555554333 3333344467778888888
Q ss_pred HhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHH
Q 002100 529 RSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALR 607 (967)
Q Consensus 529 ~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~ 607 (967)
++++ +.|+..|+.++++.|+++++|.++|.++...|+.+.|...|..++.++| ...+...+|.+.-..|..++|..
T Consensus 129 rg~~---~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQL---QDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchH---HHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHH
Confidence 8866 9999999999999999999999999999999999999999999999999 78899999999999999999999
Q ss_pred HHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHH
Q 002100 608 DVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLL 687 (967)
Q Consensus 608 ~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~ 687 (967)
.|.++++..|....+| .+++-+....|+...| +..|++++.++|....+|+++|.+
T Consensus 206 cYlkAi~~qp~fAiaw------snLg~~f~~~Gei~~a------------------iq~y~eAvkldP~f~dAYiNLGnV 261 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAW------SNLGCVFNAQGEIWLA------------------IQHYEEAVKLDPNFLDAYINLGNV 261 (966)
T ss_pred HHHHHHhhCCceeeee------hhcchHHhhcchHHHH------------------HHHHHHhhcCCCcchHHHhhHHHH
Confidence 9999999999999888 6778888887877777 999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHH
Q 002100 688 LLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAY 767 (967)
Q Consensus 688 ~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~ 767 (967)
|...+.++.|+.+|.+|+...|+++.++.++|-+|+.+|..+-|+..|+++++++|+++
T Consensus 262 ~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~--------------------- 320 (966)
T KOG4626|consen 262 YKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP--------------------- 320 (966)
T ss_pred HHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCch---------------------
Confidence 99999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002100 768 VIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLI 845 (967)
Q Consensus 768 a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al 845 (967)
.+|+|+|.++.+.|+..+|+++|++|+. +++.+++.+||.+|..+|.+++|...|.+++
T Consensus 321 -------------------~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al 381 (966)
T KOG4626|consen 321 -------------------DAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKAL 381 (966)
T ss_pred -------------------HHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 8999999999999999999999999999 6677899999999999999999999999999
Q ss_pred HHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHH
Q 002100 846 EKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-QLLHL 920 (967)
Q Consensus 846 ~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~~ 920 (967)
+..|..+.+..+++. .|++++|+.+|++|++++|..++++.++|.+|..+|+...|+..|.+||.++|.. +++.+
T Consensus 382 ~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsN 461 (966)
T KOG4626|consen 382 EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSN 461 (966)
T ss_pred hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhh
Confidence 999999999999984 2999999999999999999999999999999999999999999999999999994 69999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCchhHHH
Q 002100 921 RAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLE 953 (967)
Q Consensus 921 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~ 953 (967)
+|.+|...|+..+|+..|+.||.+.|+.+++..
T Consensus 462 Lasi~kDsGni~~AI~sY~~aLklkPDfpdA~c 494 (966)
T KOG4626|consen 462 LASIYKDSGNIPEAIQSYRTALKLKPDFPDAYC 494 (966)
T ss_pred HHHHhhccCCcHHHHHHHHHHHccCCCCchhhh
Confidence 999999999999999999999999999888643
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3e-41 Score=362.18 Aligned_cols=391 Identities=19% Similarity=0.186 Sum_probs=293.8
Q ss_pred HhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCc--hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHH
Q 002100 449 SATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH--IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMY 526 (967)
Q Consensus 449 ~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~ 526 (967)
..+..++-+.+|-++|.++.++|++++|+..|+.++++.| ..++.++|.++..+|+.
T Consensus 108 a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~--------------------- 166 (966)
T KOG4626|consen 108 AIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDL--------------------- 166 (966)
T ss_pred hhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCC---------------------
Confidence 4456788899999999999999999999999999999988 55666766666555544
Q ss_pred HHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHH
Q 002100 527 QERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGA 605 (967)
Q Consensus 527 ~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A 605 (967)
+.|...|.+|++++|++.-+...+|.++-.+|+..+|...|.+|+...| ..-+|..+|.++..+|+.-.|
T Consensus 167 ---------~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~a 237 (966)
T KOG4626|consen 167 ---------ELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLA 237 (966)
T ss_pred ---------cccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHH
Confidence 6667777777777777777777777777777777777777777777777 566777777777777777777
Q ss_pred HHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHH
Q 002100 606 LRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQS 685 (967)
Q Consensus 606 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g 685 (967)
+..|+++++++|+..++| +++|.+|.....|+.| +..|.+++.+.|....++-++|
T Consensus 238 iq~y~eAvkldP~f~dAY------iNLGnV~ke~~~~d~A------------------vs~Y~rAl~lrpn~A~a~gNla 293 (966)
T KOG4626|consen 238 IQHYEEAVKLDPNFLDAY------INLGNVYKEARIFDRA------------------VSCYLRALNLRPNHAVAHGNLA 293 (966)
T ss_pred HHHHHHhhcCCCcchHHH------hhHHHHHHHHhcchHH------------------HHHHHHHHhcCCcchhhccceE
Confidence 777777777777777777 6667777777777777 7777777777777777777777
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCch
Q 002100 686 LLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESS 765 (967)
Q Consensus 686 ~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~ 765 (967)
-+|..+|..+-|+.+|+++++..|+.++++.++|.++.+.|+..+|+.+|.+++.+.|+++
T Consensus 294 ~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha------------------- 354 (966)
T KOG4626|consen 294 CIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA------------------- 354 (966)
T ss_pred EEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH-------------------
Confidence 7777777777777777777777777777777777777777777777777777777777655
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH--HHHHHHHHHHHHhCCHHHHHHHHHH
Q 002100 766 AYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT--RAHQGLARVYHLKNQRKAAYDEMTK 843 (967)
Q Consensus 766 ~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~--~a~~~la~~~~~~g~~~~A~~~~~~ 843 (967)
++.+|||.+|.++|++++|...|.++++..+. .++.+||.+|.++|++++|+..|+.
T Consensus 355 ---------------------dam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 355 ---------------------DAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred ---------------------HHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 67777777777777777777777777774443 3677777777777777777777777
Q ss_pred HHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHH
Q 002100 844 LIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLL 918 (967)
Q Consensus 844 al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~ 918 (967)
+|.+.|+.+++|.++|. .|+.+.|+.+|.+|+..+|..++++.++|.+|...|+..+||..|+.+++++|+ ++++
T Consensus 414 alrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~ 493 (966)
T KOG4626|consen 414 ALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY 493 (966)
T ss_pred HHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh
Confidence 77777777777777773 277777777777777888888888888888888888888888888888888888 5677
Q ss_pred HHHHHHHHHcCChHH
Q 002100 919 HLRAAFHDSMGDHLH 933 (967)
Q Consensus 919 ~~~a~~~~~~g~~~~ 933 (967)
-+++.++.-..+|.+
T Consensus 494 cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 494 CNLLHCLQIVCDWTD 508 (966)
T ss_pred hHHHHHHHHHhcccc
Confidence 777777665555444
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.6e-33 Score=357.94 Aligned_cols=493 Identities=13% Similarity=0.107 Sum_probs=355.2
Q ss_pred hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCc--hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcch-------h
Q 002100 454 WQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH--IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVG-------W 524 (967)
Q Consensus 454 ~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g-------~ 524 (967)
+.....+..+|.++...|++++|+..|+++++.+| ...+..++.++...|++.+|+..+.+++...+... .
T Consensus 360 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 439 (899)
T TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLIL 439 (899)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHH
Confidence 33344455555555555555555555555555543 23334445555555555555555555554333221 1
Q ss_pred HHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHH
Q 002100 525 MYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYD 603 (967)
Q Consensus 525 ~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~ 603 (967)
.+...+ +.++|+..+++.+...|+++..+..+|.++...|++++|+..|+++++.+| +..++..+|.++...|+++
T Consensus 440 ~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 516 (899)
T TIGR02917 440 SYLRSG---QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPD 516 (899)
T ss_pred HHHhcC---CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHH
Confidence 122222 225555555555555555555555555555555555555555555555555 4445555555555555555
Q ss_pred HHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhh----------------hccccccchHHHH
Q 002100 604 GALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDR----------------WSSVDDIGSLAVV 667 (967)
Q Consensus 604 ~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~----------------~~~~d~~~al~~~ 667 (967)
+|+..|++++..+|++..++ ..++.++...+++++|..|.+-... ....+...++..+
T Consensus 517 ~A~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 517 DAIQRFEKVLTIDPKNLRAI------LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred HHHHHHHHHHHhCcCcHHHH------HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 55555555555555544444 3334444444444444322211000 0011223348899
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHH
Q 002100 668 HHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEA 747 (967)
Q Consensus 668 ~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~ 747 (967)
+++++..|.++..+..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|+++++.+|++..
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 670 (899)
T TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTE 670 (899)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997653
Q ss_pred HHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH-HHHHHHHH
Q 002100 748 FFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT-RAHQGLAR 826 (967)
Q Consensus 748 ~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~-~a~~~la~ 826 (967)
.+ ..++......+..+.+..+++.+.+.. +.....+..+|.++...|++++|+..|++++...+. ..+..++.
T Consensus 671 ~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 744 (899)
T TIGR02917 671 AQ---IGLAQLLLAAKRTESAKKIAKSLQKQH---PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHR 744 (899)
T ss_pred HH---HHHHHHHHHcCCHHHHHHHHHHHHhhC---cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHH
Confidence 32 233444445567888888888877654 344578889999999999999999999999985544 47888999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHH
Q 002100 827 VYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAI 902 (967)
Q Consensus 827 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi 902 (967)
++...|++++|++.++++++..|++..++..++. .|++++|+..|+++++.+|+++.++.++|.++...|+ .+|+
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~ 823 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRAL 823 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHH
Confidence 9999999999999999999999999999999984 3999999999999999999999999999999999999 8899
Q ss_pred HHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 903 AELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 903 ~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
..++++++..|+. ..+..+|.++..+|++++|+..|+++++.+|+++++...+..+.-..
T Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 824 EYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLAT 884 (899)
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Confidence 9999999999984 58889999999999999999999999999999999987777665543
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.4e-33 Score=352.99 Aligned_cols=494 Identities=17% Similarity=0.146 Sum_probs=355.0
Q ss_pred hchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCc--hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHH
Q 002100 452 ESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH--IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQER 529 (967)
Q Consensus 452 ~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~ 529 (967)
..+..+..+..+|.+++..|++++|+..|+++++.+| ..+...++.++...|++.+|...+++++...+.....+..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 199 (899)
T TIGR02917 120 DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK 199 (899)
T ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 4566677888899999999999999999999988866 55677888888899999999999998888666544333333
Q ss_pred hh----cCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHH
Q 002100 530 SL----YCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDG 604 (967)
Q Consensus 530 ~~----y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~ 604 (967)
+. -++.++|+..|+++++.+|.+..++..++.++...|++++|...++++++..| ++..++.+|.++...|++++
T Consensus 200 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (899)
T TIGR02917 200 GDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYED 279 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHH
Confidence 21 12558999999999999999999999999999999999999999999988888 77888888888889999999
Q ss_pred HHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhh----------------hccccccchHHHHH
Q 002100 605 ALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDR----------------WSSVDDIGSLAVVH 668 (967)
Q Consensus 605 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~----------------~~~~d~~~al~~~~ 668 (967)
|+..|+++++.+|++..++ ...+.++...+++++|..+.+.... ....+...++..+.
T Consensus 280 A~~~~~~~l~~~~~~~~~~------~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 353 (899)
T TIGR02917 280 ARETLQDALKSAPEYLPAL------LLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLS 353 (899)
T ss_pred HHHHHHHHHHhCCCchhHH------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999888877666 5667778888888877432221100 01122244677788
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHH
Q 002100 669 HMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAF 748 (967)
Q Consensus 669 ~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 748 (967)
++++.+|.++..+..+|.++...|++++|+..|+++++.+|++...+..+|.++...|++++|+..+++++..+|+....
T Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 433 (899)
T TIGR02917 354 PALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA 433 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888754421
Q ss_pred HHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC--cHHHHHHHHH
Q 002100 749 FLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLAR 826 (967)
Q Consensus 749 ~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~~~la~ 826 (967)
...++......+..+.++..++...+..+ .....+..+|.++...|++++|+.+|+++++.+ ...++..+|.
T Consensus 434 ---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 507 (899)
T TIGR02917 434 ---DLLLILSYLRSGQFDKALAAAKKLEKKQP---DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLAR 507 (899)
T ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 12233333445566777777777665433 334677778888888888888888888887743 3447777777
Q ss_pred HHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHH
Q 002100 827 VYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAI 902 (967)
Q Consensus 827 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi 902 (967)
++...|++++|++.|+++++..|++..++..++.. +++++|+..++++++.+|.+...+..++.++...|++++|+
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 587 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKAL 587 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHH
Confidence 77777777777777777777777777666665532 56666666666666666655555555555555555555555
Q ss_pred HHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 002100 903 AELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDK 957 (967)
Q Consensus 903 ~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r 957 (967)
..++++++..|. ...+..+|.++...|++++|+..|+++++.+|+++.++..+..
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 643 (899)
T TIGR02917 588 AILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643 (899)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 555555555554 2355555555555555555555555555555555544443333
No 5
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1e-32 Score=353.10 Aligned_cols=412 Identities=13% Similarity=0.057 Sum_probs=313.7
Q ss_pred hcchHHHHHHHHHHhccCcccccchHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhH--
Q 002100 414 VGHASFVLYYFLSQIGMEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYS-- 491 (967)
Q Consensus 414 ~~~e~~~l~~~l~~l~~~~~~~~~~~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a-- 491 (967)
+.+...++....-|... .+.+.+.+.++++....++ +..++..++.+++..|++++|.+.++++++++|...
T Consensus 25 ~~~~~~Ll~q~~~~~~~---~~~d~a~~~l~kl~~~~p~---~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~ 98 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEAT---HREDLVRQSLYRLELIDPN---NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAY 98 (1157)
T ss_pred CCHHHHHHHHHHHHHhh---CChHHHHHHHHHHHccCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHH
Confidence 33445677777777764 3667777778777666554 456778899999999999999999999999977332
Q ss_pred ----------------HHHHHHHHHhcCChHHHHHHHHHHHhccCcchh---HHHHH-h-hcCChHHHHHHHHHhHhhCC
Q 002100 492 ----------------LVGVARTKFKRGHKYSAYKLMNSLISDYTPVGW---MYQER-S-LYCSGKEKMMDLNTATELDP 550 (967)
Q Consensus 492 ----------------~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~---~~~~~-~-~y~~~~~A~~~~~~al~l~P 550 (967)
...+|+++...|++++|+..|++++...++... .|... . .-++.++|+..|+++++.+|
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P 178 (1157)
T PRK11447 99 RSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP 178 (1157)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC
Confidence 245677889999999999999999997665542 12221 1 11356999999999999999
Q ss_pred CCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C----------------------------------hh---H----
Q 002100 551 TLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S----------------------------------PD---C---- 588 (967)
Q Consensus 551 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~----------------------------------~~---~---- 588 (967)
+++.++..+|.++...|++++|++.+++++...+ . .. +
T Consensus 179 ~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L 258 (1157)
T PRK11447 179 GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQL 258 (1157)
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHH
Confidence 9999999999999999999999999998865432 0 00 0
Q ss_pred -------------HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhh
Q 002100 589 -------------LELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRW 655 (967)
Q Consensus 589 -------------~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~ 655 (967)
...+|.++...|++++|+..|+++++.+|++..++ ..++.++...+++++|
T Consensus 259 ~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~------~~Lg~~~~~~g~~~eA---------- 322 (1157)
T PRK11447 259 AEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEAL------GALGQAYSQQGDRARA---------- 322 (1157)
T ss_pred HHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHcCCHHHH----------
Confidence 01347788899999999999999999999999988 7889999999999999
Q ss_pred ccccccchHHHHHHHHhcCCCChH--------------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 002100 656 SSVDDIGSLAVVHHMLANDPGKSL--------------LRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWI 721 (967)
Q Consensus 656 ~~~d~~~al~~~~~~l~~~p~~~~--------------~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~ 721 (967)
+..|+++++.+|++.. ....+|..+...|++++|+..|+++++.+|++..++..+|.+
T Consensus 323 --------~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~ 394 (1157)
T PRK11447 323 --------VAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDV 394 (1157)
T ss_pred --------HHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8999999999997653 223558889999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCC------CchHHHHHHhHHH
Q 002100 722 LYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDG------LRKGQALNNLGSV 795 (967)
Q Consensus 722 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~------~~~~~a~~~lg~~ 795 (967)
+...|++++|++.|+++++++|++.........+.. ....++++..++.+....... ......+..+|.+
T Consensus 395 ~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~----~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~ 470 (1157)
T PRK11447 395 AMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR----QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEA 470 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999999999999987643321111111 123455555554332211000 0112345667778
Q ss_pred HHhcccHHHHHHHHHHHhccCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHH
Q 002100 796 YVDCEKLDLAADCYMNALNIKH--TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS 859 (967)
Q Consensus 796 ~~~~g~~~~A~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 859 (967)
+...|++++|+..|+++++.+| ..+++.+|.+|..+|++++|+..|+++++..|+++.+++.++
T Consensus 471 ~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~a 536 (1157)
T PRK11447 471 LENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYG 536 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 8888888888888888877444 347777888888888888888888888887777766554443
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=6.5e-32 Score=345.82 Aligned_cols=469 Identities=13% Similarity=0.031 Sum_probs=335.0
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchh---HHHHHHHHHHhcCChH------------
Q 002100 442 LLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIY---SLVGVARTKFKRGHKY------------ 506 (967)
Q Consensus 442 ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~---a~~~la~~~~~~g~~~------------ 506 (967)
.++.+.+.....|....+++.+|.+++..|++++|+..|+++++..+.. +...+..+ ...+...
T Consensus 166 A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l-~~~~~~~~~~~~l~~~l~~ 244 (1157)
T PRK11447 166 AINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQI-KDMPVSDASVAALQKYLQV 244 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHH-hccCCChhhHHHHHHHHHH
Confidence 3444444555566677788888999988999999999998887653211 00010000 0001111
Q ss_pred --------HHHHHHHHHHhcc--C-----cchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHH
Q 002100 507 --------SAYKLMNSLISDY--T-----PVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAA 571 (967)
Q Consensus 507 --------~A~~~l~~~i~~~--~-----~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~ 571 (967)
.|...+.+..... + ..|.++...+++ ++|+..|+++++.+|+++.++..+|.++..+|++++
T Consensus 245 ~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~---~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~e 321 (1157)
T PRK11447 245 FSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQG---GKAIPELQQAVRANPKDSEALGALGQAYSQQGDRAR 321 (1157)
T ss_pred CCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 1222222211100 0 113333333433 777777777777777777777777777777777777
Q ss_pred HHHHHHHHhccCC-Chh--------------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhH
Q 002100 572 AITEINRIIGFKV-SPD--------------CLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQ 636 (967)
Q Consensus 572 A~~~~~~al~~~p-~~~--------------~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~ 636 (967)
|+..|+++++.+| +.. ....+|.++...|++++|+..|+++++++|++..++ ..++.++
T Consensus 322 A~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~------~~Lg~~~ 395 (1157)
T PRK11447 322 AVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAV------LGLGDVA 395 (1157)
T ss_pred HHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHH
Confidence 7777777777766 221 112346666677777777777777777777766666 5566777
Q ss_pred HHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH-----------------------------------
Q 002100 637 PLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR----------------------------------- 681 (967)
Q Consensus 637 ~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~----------------------------------- 681 (967)
...+++++| +..|+++++.+|.+..++
T Consensus 396 ~~~g~~~eA------------------~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~ 457 (1157)
T PRK11447 396 MARKDYAAA------------------ERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIER 457 (1157)
T ss_pred HHCCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 777777776 455555555555544333
Q ss_pred -------HHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 682 -------FRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 682 -------~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|++.... +.
T Consensus 458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~---~a 534 (1157)
T PRK11447 458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQV---YA 534 (1157)
T ss_pred HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH---HH
Confidence 34556667789999999999999999999999999999999999999999999999999999766322 12
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCC-------chHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHH
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGL-------RKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARV 827 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~ 827 (967)
++......++.+.++..++.+........ ........++..+...|++++|+.+++ ..+.+...+..+|.+
T Consensus 535 ~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~--~~p~~~~~~~~La~~ 612 (1157)
T PRK11447 535 YGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR--QQPPSTRIDLTLADW 612 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH--hCCCCchHHHHHHHH
Confidence 22222234556667776665432211100 011234567889999999999999998 356666789999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHH
Q 002100 828 YHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIA 903 (967)
Q Consensus 828 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~ 903 (967)
+..+|++++|++.|+++++.+|++..++..++.. +++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 613 ~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999999999999843 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCh-------HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 904 ELSRAIAFKPDL-------QLLHLRAAFHDSMGDHLHTQRDCEAALC 943 (967)
Q Consensus 904 ~~~kal~~~p~~-------~~~~~~a~~~~~~g~~~~A~~~~~~al~ 943 (967)
.|+++++..|+. .++..+|.++...|++++|+..|++|+.
T Consensus 693 ~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 693 TFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999987652 2555679999999999999999999985
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.4e-31 Score=322.48 Aligned_cols=418 Identities=12% Similarity=0.051 Sum_probs=327.1
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCCh
Q 002100 456 KQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSG 535 (967)
Q Consensus 456 ~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~ 535 (967)
.+..+..+|..++..|+|++|+..|++++++.|.. ... .+.+.+|..+++|
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~-~~~-------------------------~n~a~~~~~l~~~--- 176 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP-VYY-------------------------SNRAACHNALGDW--- 176 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch-HHH-------------------------HHHHHHHHHhCCH---
Confidence 35568899999999999999999999999998742 111 1235566667766
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
++|+..++++++++|++..+++.+|.+|..+|++++|+..|..+...++ +.........-.. ...+...+..+++
T Consensus 177 ~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~a~~~~~~~l~ 252 (615)
T TIGR00990 177 EKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL----KKFAESKAKEILE 252 (615)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH----HHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998887776 3322111111111 1344555666666
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhh--------------chhhHhhHHHHHhhh----ccccccchHHHHHHHHhc---
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQ--------------QWSQADCWMQLYDRW----SSVDDIGSLAVVHHMLAN--- 673 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~A~~~~~l~~~~----~~~d~~~al~~~~~~l~~--- 673 (967)
..|.+...+.. ++..+.... +......+..++... .......|+..|+++++.
T Consensus 253 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~ 326 (615)
T TIGR00990 253 TKPENLPSVTF------VGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL 326 (615)
T ss_pred cCCCCCCCHHH------HHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC
Confidence 66665433311 111110000 000000011111100 001112348889999876
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Q 002100 674 DPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAY 753 (967)
Q Consensus 674 ~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 753 (967)
.|....++..+|.++..+|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++.
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~------- 399 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP------- 399 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-------
Confidence 4777888999999999999999999999999999999999999999999999999999999999999998666
Q ss_pred HhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc--HHHHHHHHHHHHHh
Q 002100 754 ALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH--TRAHQGLARVYHLK 831 (967)
Q Consensus 754 ~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--~~a~~~la~~~~~~ 831 (967)
.+++.+|.++...|++++|+.+|+++++.+| ..++..+|.++..+
T Consensus 400 ---------------------------------~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 400 ---------------------------------DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE 446 (615)
T ss_pred ---------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC
Confidence 7899999999999999999999999999655 45899999999999
Q ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchH------HHHHHHHHH-hCCCHHH
Q 002100 832 NQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYP------YRYRAAVLM-DDHKEAE 900 (967)
Q Consensus 832 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~------~~~la~~~~-~~g~~~e 900 (967)
|++++|+..|+++++..|+++.++..+|.. |++++|+..|+++++++|..... +...+.++. ..|++++
T Consensus 447 g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e 526 (615)
T TIGR00990 447 GSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIE 526 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999999999999999999853 99999999999999999975433 233344444 4699999
Q ss_pred HHHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHH
Q 002100 901 AIAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTL 952 (967)
Q Consensus 901 Ai~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l 952 (967)
|+..++++++++|+.. ++..+|.++..+|++++|+..|++++++.+...+..
T Consensus 527 A~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~ 579 (615)
T TIGR00990 527 AENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV 579 (615)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999964 788899999999999999999999999999766643
No 8
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-28 Score=280.18 Aligned_cols=503 Identities=14% Similarity=0.056 Sum_probs=403.7
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCc---hhHHHHHHHHHHhcCChHHHHHHHHHH
Q 002100 439 TVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH---IYSLVGVARTKFKRGHKYSAYKLMNSL 515 (967)
Q Consensus 439 ~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~---~~a~~~la~~~~~~g~~~~A~~~l~~~ 515 (967)
...+..+..-.....|.+.++++..+++.+..|+|..|+.+|++++.++| ....++.+.+..+.|+.+.|...+.++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 34445555556677888999999999999999999999999999999977 566778888999999999999999998
Q ss_pred HhccCcchhHHHHHhhc----C---ChHHHHHHHHHhHhhCCCCch----------------------------------
Q 002100 516 ISDYTPVGWMYQERSLY----C---SGKEKMMDLNTATELDPTLSY---------------------------------- 554 (967)
Q Consensus 516 i~~~~~~g~~~~~~~~y----~---~~~~A~~~~~~al~l~P~~~~---------------------------------- 554 (967)
++.-|....++..++.+ . ....++..+.++...+|.++.
T Consensus 226 lqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~ 305 (1018)
T KOG2002|consen 226 LQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSI 305 (1018)
T ss_pred HhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHH
Confidence 88666443333333211 0 336666777777766665543
Q ss_pred ---hHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C-hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhh
Q 002100 555 ---PYKYRAILLVEENKLAAAITEINRIIGFKV-S-PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGD 629 (967)
Q Consensus 555 ---~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 629 (967)
.+|.+|.+|..+|+|++|..+|.++++.+| + .-.++.+|++|+..|+++.|+.+|+++++..|++....
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm------ 379 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM------ 379 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH------
Confidence 356778888888888888888888888888 4 66888888889889999999999999999999888877
Q ss_pred hhHhhhHHHhh----ch---------------hhHhhHHHHHhhhccccccchHHHHHHHHhc-----CCCChHHHHHHH
Q 002100 630 NLVETLQPLVQ----QW---------------SQADCWMQLYDRWSSVDDIGSLAVVHHMLAN-----DPGKSLLRFRQS 685 (967)
Q Consensus 630 ~~~~~l~~~~~----~~---------------~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~-----~p~~~~~~~~~g 685 (967)
..+|.+|...+ .- ...+.|+.+.+.|...|.-.++..|..++.. .+--+....++|
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNva 459 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVA 459 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Confidence 66677776653 11 1234677777777777777778888887732 244467888999
Q ss_pred HHHHHhcCHHHHHHHHHHHHhc-----CCch-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHh
Q 002100 686 LLLLRLNSQKAAMRSLRLARNY-----STSE-----HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYAL 755 (967)
Q Consensus 686 ~~~~~~g~~~~A~~~l~~al~~-----~p~~-----~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~l 755 (967)
.+++..|+++.|...|..|+.. +++. ....+++|.++...++++.|.+.|...+...|.+...++....+
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~m 539 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCM 539 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHH
Confidence 9999999999999999999876 2222 23478999999999999999999999999999877555444333
Q ss_pred hhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc----cCcHHHHHHHHHHHHH-
Q 002100 756 ADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN----IKHTRAHQGLARVYHL- 830 (967)
Q Consensus 756 a~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----~~~~~a~~~la~~~~~- 830 (967)
+ .+......+...+..++...+.+| .++..+|..|+...++..|.+-|+..++ ...+++...||.++++
T Consensus 540 a---~~k~~~~ea~~~lk~~l~~d~~np---~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 540 A---RDKNNLYEASLLLKDALNIDSSNP---NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred H---HhccCcHHHHHHHHHHHhcccCCc---HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 3 234556778888888888777766 7888999999999999999998887776 3345688889998764
Q ss_pred -----------hCCHHHHHHHHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhC
Q 002100 831 -----------KNQRKAAYDEMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDD 895 (967)
Q Consensus 831 -----------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~ 895 (967)
++.+++|+..|.+++..+|.|.++-+..|. -+++.+|+..|.++.+--.++..+|.++|.+|+.+
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHH
Confidence 456889999999999999999998888874 29999999999999988778999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHH
Q 002100 896 HKEAEAIAELSRAIAFKP---DLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLE 953 (967)
Q Consensus 896 g~~~eAi~~~~kal~~~p---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~ 953 (967)
|+|..|++.|+.+++..- +.+++..+|.++...|++.+|...+.+|+.+.|.++.+.=
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~F 754 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKF 754 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHh
Confidence 999999999999997543 3679999999999999999999999999999999987643
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.98 E-value=7.2e-29 Score=299.00 Aligned_cols=415 Identities=15% Similarity=0.050 Sum_probs=334.7
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHhCc--hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcch-h--HHHHHhh
Q 002100 457 QLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH--IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVG-W--MYQERSL 531 (967)
Q Consensus 457 a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g-~--~~~~~~~ 531 (967)
...+.++|.+|+..|+|++|+..|+++++++| ..++..++.++...|++++|+..+..+........ . ....+..
T Consensus 160 ~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (615)
T TIGR00990 160 PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL 239 (615)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34688999999999999999999999999987 45778889999999999999999977655322111 1 1111111
Q ss_pred cCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHH---HhcCHHHHHH
Q 002100 532 YCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISI---ALEDYDGALR 607 (967)
Q Consensus 532 y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~---~~g~~~~A~~ 607 (967)
. ..+...+..+++..|.+...+..++..+ ...+...+...+....+.++ ....+..++..+. ..++|++|+.
T Consensus 240 ~---~~a~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~ 315 (615)
T TIGR00990 240 K---KFAESKAKEILETKPENLPSVTFVGNYL-QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR 315 (615)
T ss_pred H---HHHHHHHHHHHhcCCCCCCCHHHHHHHH-HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHH
Confidence 1 4566777888888999888888787755 33334444555666666666 4555566555443 3478999999
Q ss_pred HHHHHHHhC---CCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHH
Q 002100 608 DVRALLTLD---PSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQ 684 (967)
Q Consensus 608 ~~~~al~l~---p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~ 684 (967)
.|+++++.+ |+...++ ..++.++...+++++| +..++++++.+|.....+..+
T Consensus 316 ~~~~al~~~~~~~~~a~a~------~~lg~~~~~~g~~~eA------------------~~~~~kal~l~P~~~~~~~~l 371 (615)
T TIGR00990 316 AFEKALDLGKLGEKEAIAL------NLRGTFKCLKGKHLEA------------------LADLSKSIELDPRVTQSYIKR 371 (615)
T ss_pred HHHHHHhcCCCChhhHHHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHHcCCCcHHHHHHH
Confidence 999999874 6666666 7789999999999999 999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCc
Q 002100 685 SLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPES 764 (967)
Q Consensus 685 g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~ 764 (967)
|.++...|++++|+..|+++++.+|+++.+++.+|.+++..|++++|+..|+++++++|++.
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~------------------ 433 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI------------------ 433 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH------------------
Confidence 99999999999999999999999999999999999999999999999999999999999766
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002100 765 SAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRKAAYDEMT 842 (967)
Q Consensus 765 ~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~ 842 (967)
.++.++|.++..+|++++|+..|+++++. +...++..+|.++..+|++++|++.|+
T Consensus 434 ----------------------~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 491 (615)
T TIGR00990 434 ----------------------FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD 491 (615)
T ss_pred ----------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 68889999999999999999999999984 445689999999999999999999999
Q ss_pred HHHHHccCCHHHHH------HHH-----ccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 002100 843 KLIEKARNNASAYE------KRS-----EYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAF 911 (967)
Q Consensus 843 ~al~~~p~~~~~~~------~~~-----~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~ 911 (967)
++++..|++...+. ..+ ..+++++|+..++++++++|++..++..+|.++...|++++|+..|++++++
T Consensus 492 ~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 492 TAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999987433222 111 1289999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 002100 912 KPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDP 946 (967)
Q Consensus 912 ~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P 946 (967)
.+...-.. ....+.+|.+...++.+..|
T Consensus 572 ~~~~~e~~-------~a~~~~~a~~~~~~~~~~~~ 599 (615)
T TIGR00990 572 ARTEGELV-------QAISYAEATRTQIQVQEDYP 599 (615)
T ss_pred hccHHHHH-------HHHHHHHHHHHHHHHHHHhH
Confidence 87743211 11234455555555555544
No 10
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=2.5e-27 Score=289.67 Aligned_cols=496 Identities=13% Similarity=-0.020 Sum_probs=340.5
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcc
Q 002100 443 LERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPV 522 (967)
Q Consensus 443 l~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~ 522 (967)
+..+.++...+|....+++.++..|+..|++++|+.+++++++.+|......+..... +++.+|...+++++...|..
T Consensus 64 ~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i--~~~~kA~~~ye~l~~~~P~n 141 (987)
T PRK09782 64 IREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI--PVEVKSVTTVEELLAQQKAC 141 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh--ccChhHHHHHHHHHHhCCCC
Confidence 3333334444455566677777777777777777777777777777554444332222 66777777777777777765
Q ss_pred hhHHHHHhh---------cCChHHHHHHHHHhHhhCCC--CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHH
Q 002100 523 GWMYQERSL---------YCSGKEKMMDLNTATELDPT--LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLE 590 (967)
Q Consensus 523 g~~~~~~~~---------y~~~~~A~~~~~~al~l~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 590 (967)
..++..+.. |.+.++|.+.++ .-.+.|+ .....+.++.+|..+++|++|++.+.++++..| +...+.
T Consensus 142 ~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~ 220 (987)
T PRK09782 142 DAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERR 220 (987)
T ss_pred hhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 555544332 334456665555 2222232 223455557777777777777777777777777 666777
Q ss_pred HHHHHHHH-hcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHh----------------
Q 002100 591 LRAWISIA-LEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYD---------------- 653 (967)
Q Consensus 591 ~la~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~---------------- 653 (967)
.++.+|.. +++ ++|+..++..++ +++... ..++..+...++.++|..+++-+.
T Consensus 221 ~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~------~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l 290 (987)
T PRK09782 221 QWFDVLLAGQLD-DRLLALQSQGIF---TDPQSR------ITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL 290 (987)
T ss_pred HHHHHHHHhhCH-HHHHHHhchhcc---cCHHHH------HHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH
Confidence 77777776 355 666666554333 222222 233444555555555543322100
Q ss_pred -hhcc------------------------------------------------------------ccccchHHHHHHHHh
Q 002100 654 -RWSS------------------------------------------------------------VDDIGSLAVVHHMLA 672 (967)
Q Consensus 654 -~~~~------------------------------------------------------------~d~~~al~~~~~~l~ 672 (967)
+.+. ....++......+..
T Consensus 291 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~ 370 (987)
T PRK09782 291 SKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQ 370 (987)
T ss_pred HhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHh
Confidence 0000 000011122222333
Q ss_pred cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh----------------------------------------------
Q 002100 673 NDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARN---------------------------------------------- 706 (967)
Q Consensus 673 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~---------------------------------------------- 706 (967)
..|.+.......+....+.|++++|...|+.+..
T Consensus 371 ~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 450 (987)
T PRK09782 371 QEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQW 450 (987)
T ss_pred cCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHH
Confidence 3355555555555555556666665555544432
Q ss_pred -------------------cCCc--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCch
Q 002100 707 -------------------YSTS--EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESS 765 (967)
Q Consensus 707 -------------------~~p~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~ 765 (967)
..|. ++.+++.+|.++.. ++.++|+..+.+++...|+.......++. ....++.
T Consensus 451 ~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~a----l~~~Gr~ 525 (987)
T PRK09782 451 QSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQ----AYQVEDY 525 (987)
T ss_pred HhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHH----HHHCCCH
Confidence 3344 66778888888887 88889999999999999976532222222 2345677
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhCCHHHHHHHHHH
Q 002100 766 AYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKNQRKAAYDEMTK 843 (967)
Q Consensus 766 ~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~A~~~~~~ 843 (967)
+.++..++++...+.. ...+..+|.++...|++++|+.+|+++++.++.. .+..++.....+|++++|+..|++
T Consensus 526 eeAi~~~rka~~~~p~----~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 526 ATALAAWQKISLHDMS----NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred HHHHHHHHHHhccCCC----cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 8888888887654333 2457888999999999999999999999965443 555566666677999999999999
Q ss_pred HHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHH
Q 002100 844 LIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLL 918 (967)
Q Consensus 844 al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~ 918 (967)
+++.+|+ +.++..++. .|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++++..|+ ..++
T Consensus 602 AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~ 680 (987)
T PRK09782 602 SLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALI 680 (987)
T ss_pred HHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999996 889988884 399999999999999999999999999999999999999999999999999999 5699
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhh
Q 002100 919 HLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATER 961 (967)
Q Consensus 919 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~ 961 (967)
+++|.++..+|++++|+..|+++++++|++..+...+..+..+
T Consensus 681 ~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~ 723 (987)
T PRK09782 681 RQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQ 723 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHH
Confidence 9999999999999999999999999999998887666655544
No 11
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.7e-27 Score=268.01 Aligned_cols=471 Identities=14% Similarity=0.113 Sum_probs=372.5
Q ss_pred HHHHHhhcCC--hHHHHHHHHHHHHhCc--hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCc--------chhHHHHHh
Q 002100 463 LGVVMLEREE--YKDAQNWFKAAVEAGH--IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTP--------VGWMYQERS 530 (967)
Q Consensus 463 lG~~~~~~g~--y~~A~~~f~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~--------~g~~~~~~~ 530 (967)
.+..++..++ ++.|...|..+++..| .-+++|-|++.+.+|++..|..+|++++...|. .|.++...+
T Consensus 134 ~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~ 213 (1018)
T KOG2002|consen 134 QRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLG 213 (1018)
T ss_pred hhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhcc
Confidence 3444444444 5999999999999966 667778899999999999999999998774432 355556665
Q ss_pred hcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcC---cHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHH
Q 002100 531 LYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEEN---KLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGAL 606 (967)
Q Consensus 531 ~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~ 606 (967)
+.+.|+..|.+|++++|+++.++..+|.+..... .+..++..+.++...+| +|.++..++..|+..|+|..+.
T Consensus 214 ---~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 214 ---MSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVW 290 (1018)
T ss_pred ---chhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHH
Confidence 4499999999999999999999999998776654 47789999999999999 9999999999999999999999
Q ss_pred HHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCC-hHHHHHHH
Q 002100 607 RDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGK-SLLRFRQS 685 (967)
Q Consensus 607 ~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~-~~~~~~~g 685 (967)
.....++...-.....- .+.|.+|..+...|+|++| ..+|.++++.+|++ ...++.+|
T Consensus 291 ~la~~ai~~t~~~~~~a---es~Y~~gRs~Ha~Gd~ekA------------------~~yY~~s~k~~~d~~~l~~~Glg 349 (1018)
T KOG2002|consen 291 HLAEHAIKNTENKSIKA---ESFYQLGRSYHAQGDFEKA------------------FKYYMESLKADNDNFVLPLVGLG 349 (1018)
T ss_pred HHHHHHHHhhhhhHHHH---HHHHHHHHHHHhhccHHHH------------------HHHHHHHHccCCCCccccccchh
Confidence 99999987753322221 1238899999999999999 89999999999998 77899999
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcC----ChHHHHHHHHHHHhcccchHHHHHH-HH--Hhhhc
Q 002100 686 LLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTG----HREEALAKAEESISIQRSFEAFFLK-AY--ALADS 758 (967)
Q Consensus 686 ~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g----~~~eA~~~~~~al~~~p~~~~~~~~-~~--~la~~ 758 (967)
+.|+..|+++.|+.+|+++++..|++.+++..+|.+|...+ ..++|.....++++..|.+...++. +. ...+.
T Consensus 350 Qm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~ 429 (1018)
T KOG2002|consen 350 QMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP 429 (1018)
T ss_pred HHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh
Confidence 99999999999999999999999999999999999998876 6788999999999998866533321 11 21122
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc-----CcHH-------HHHHHHH
Q 002100 759 SLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI-----KHTR-------AHQGLAR 826 (967)
Q Consensus 759 ~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~-----~~~~-------a~~~la~ 826 (967)
....+-...++..|+.... +.....++|+|..++..|++.+|...|..|+.. ++.. ..+++|+
T Consensus 430 ~~sL~~~~~A~d~L~~~~~-----~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 430 WASLDAYGNALDILESKGK-----QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred HHHHHHHHHHHHHHHHcCC-----CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 1111112222222222211 133468888899999999999999888888773 1111 4778888
Q ss_pred HHHHhCCHHHHHHHHHHHHHHccCCHHHHHHH----------------------------------Hcc-----------
Q 002100 827 VYHLKNQRKAAYDEMTKLIEKARNNASAYEKR----------------------------------SEY----------- 861 (967)
Q Consensus 827 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~----------------------------------~~~----------- 861 (967)
++...++++.|.+.|..+++.+|...++|..+ |.+
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc
Confidence 88888888888888877776666644433332 200
Q ss_pred -----------------------------------------CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHH
Q 002100 862 -----------------------------------------CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAE 900 (967)
Q Consensus 862 -----------------------------------------~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e 900 (967)
+.+++|++.|.++++.+|.+.++-..+|.|+...|++.+
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchH
Confidence 234789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCchhHHHHHHHHHhhh
Q 002100 901 AIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLD--PNHTDTLELYDKATERV 962 (967)
Q Consensus 901 Ai~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~~l~l~~r~~~~~ 962 (967)
|+..|.++.+-..+ .++|.++|.+|..+|+|-.|++.|+.++... -++.+++..+.|+--..
T Consensus 665 A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~ 729 (1018)
T KOG2002|consen 665 ARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA 729 (1018)
T ss_pred HHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 99999999987664 5699999999999999999999999999876 46788988888875443
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=3.9e-25 Score=270.61 Aligned_cols=555 Identities=11% Similarity=-0.054 Sum_probs=389.7
Q ss_pred HHHHHhChHHHHHHHHHHHhhhhhhcCCchhHhhhhccchHHHHHHhhcchHHHHHHHHHHhccCcccccchHHHHHHHH
Q 002100 367 EYGLEEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCSAEARERLAMVGHASFVLYYFLSQIGMEEDMKSNTTVMLLERL 446 (967)
Q Consensus 367 ~~A~~~~~~~L~~~c~~~i~~~~~~~l~~~~~~~ll~s~~~~~r~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~ll~~l 446 (967)
--|++..+..+..+-..++...-.......++.+- -..+++-+...... ......++.+-+. ..+.+.+ +..+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~f~~a~~~~~~Gd~~~A--~~~l~~Al~~dP~n-~~~~~~LA~~yl~-~g~~~~A---~~~~ 101 (987)
T PRK09782 29 TSAEELGLSDYRHFVIYPRLDKALKAQKNNDEATA--IREFEYIHQQVPDN-IPLTLYLAEAYRH-FGHDDRA---RLLL 101 (987)
T ss_pred cccccCCCchHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHhCCCC-HHHHHHHHHHHHH-CCCHHHH---HHHH
Confidence 35666777777777665544333332322222221 12344334444333 3333444444332 1233333 4444
Q ss_pred HHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCc--hhHHHHHHHH--------HHhcCChHHHHHHHHHHH
Q 002100 447 VESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH--IYSLVGVART--------KFKRGHKYSAYKLMNSLI 516 (967)
Q Consensus 447 ~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~--~~a~~~la~~--------~~~~g~~~~A~~~l~~~i 516 (967)
.+....+|.++..+..++.+ ++|++|+..|+++++.+| ..+...++.+ |.+.++..++++ .+.+
T Consensus 102 ~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~ 175 (987)
T PRK09782 102 EDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATF 175 (987)
T ss_pred HHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--Hhhh
Confidence 44555566666666666665 999999999999999977 4555555665 544444444444 2222
Q ss_pred hccCc-------chhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHh-cCcHHHHHHHHHHHhccCCChhH
Q 002100 517 SDYTP-------VGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVE-ENKLAAAITEINRIIGFKVSPDC 588 (967)
Q Consensus 517 ~~~~~-------~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~ 588 (967)
...+. ...+|..++.| ++|+..+.+.++..|.+...+..++.+|.. +++ ++|+..++..++ .++.+
T Consensus 176 ~~~~~~~vL~L~~~rlY~~l~dw---~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk--~d~~l 249 (987)
T PRK09782 176 AASPEGKTLRTDLLQRAIYLKQW---SQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF--TDPQS 249 (987)
T ss_pred CCCCCcHHHHHHHHHHHHHHhCH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc--cCHHH
Confidence 22211 14455666655 999999999999999999999999999998 477 888888665332 47888
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCchHHhhh----------------------------------------
Q 002100 589 LELRAWISIALEDYDGALRDVRALLTL---DPSYMMFYGQ---------------------------------------- 625 (967)
Q Consensus 589 ~~~la~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~---------------------------------------- 625 (967)
...++..|.+.|+.++|...+++.-.. +|.+......
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQY 329 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHH
Confidence 889999999999999998777653322 2222111000
Q ss_pred -------------------hh---------------------------hhhhHhhhHHHhhchhhHhhHHH-HHh-----
Q 002100 626 -------------------LH---------------------------GDNLVETLQPLVQQWSQADCWMQ-LYD----- 653 (967)
Q Consensus 626 -------------------~~---------------------------~~~~~~~l~~~~~~~~~A~~~~~-l~~----- 653 (967)
.. .....+......+++.+|..|.+ .|.
T Consensus 330 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 409 (987)
T PRK09782 330 DAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDA 409 (987)
T ss_pred HHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccc
Confidence 00 00001111122223333322221 111
Q ss_pred ---------------hhcccc--------------------------ccchHHHHHHHHhcCCC--ChHHHHHHHHHHHH
Q 002100 654 ---------------RWSSVD--------------------------DIGSLAVVHHMLANDPG--KSLLRFRQSLLLLR 690 (967)
Q Consensus 654 ---------------~~~~~d--------------------------~~~al~~~~~~l~~~p~--~~~~~~~~g~~~~~ 690 (967)
+....+ ...+...+.+++..+|. ++.+++.+|.++..
T Consensus 410 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~ 489 (987)
T PRK09782 410 RLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD 489 (987)
T ss_pred ccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Confidence 110100 01123344455666677 88999999999987
Q ss_pred hcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHH
Q 002100 691 LNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQ 770 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~ 770 (967)
+++.+|+..+.+++...|++. ....+|.++...|++++|+..|++++...|.....+ .++......+....+..
T Consensus 490 -~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~----~la~all~~Gd~~eA~~ 563 (987)
T PRK09782 490 -TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLL----AAANTAQAAGNGAARDR 563 (987)
T ss_pred -CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHH----HHHHHHHHCCCHHHHHH
Confidence 899999999999999999865 466678888899999999999999988777655332 33333445567788999
Q ss_pred HHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 002100 771 LLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH-TRAHQGLARVYHLKNQRKAAYDEMTKLIEKAR 849 (967)
Q Consensus 771 ~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 849 (967)
.++.+++.. +.....+..++......|++++|+..|+++++.+| ..++.++|.++.++|++++|+..|+++++.+|
T Consensus 564 ~l~qAL~l~---P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P 640 (987)
T PRK09782 564 WLQQAEQRG---LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEP 640 (987)
T ss_pred HHHHHHhcC---CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 998888754 33345555666666677999999999999999554 45899999999999999999999999999999
Q ss_pred CCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHH
Q 002100 850 NNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-QLLHLRAAF 924 (967)
Q Consensus 850 ~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~~~a~~ 924 (967)
+++.++..+|. .|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++++..|+. .+....|++
T Consensus 641 d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~ 720 (987)
T PRK09782 641 NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQ 720 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHH
Confidence 99999999994 3999999999999999999999999999999999999999999999999999995 588899999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCch
Q 002100 925 HDSMGDHLHTQRDCEAALCLDPNHT 949 (967)
Q Consensus 925 ~~~~g~~~~A~~~~~~al~~~P~~~ 949 (967)
.....+++.|.+.++++...+|.-.
T Consensus 721 ~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 721 NQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccch
Confidence 9999999999999999999999866
No 13
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=2.1e-26 Score=282.42 Aligned_cols=400 Identities=11% Similarity=0.008 Sum_probs=306.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhCchhH--HHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHH
Q 002100 462 QLGVVMLEREEYKDAQNWFKAAVEAGHIYS--LVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKM 539 (967)
Q Consensus 462 ~lG~~~~~~g~y~~A~~~f~~al~~~~~~a--~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~ 539 (967)
..-.+..-.|++++|+..|+++...++..+ +..+|.++...|++ ++|+
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~------------------------------~~A~ 69 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQW------------------------------QNSL 69 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH------------------------------HHHH
Confidence 344566778999999999999998766444 66666655555443 7888
Q ss_pred HHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002100 540 MDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPS 618 (967)
Q Consensus 540 ~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 618 (967)
..|+++++++|.++.++..+|.++...|++++|+..++++++..| ++. +..+|.++...|++++|+..++++++.+|+
T Consensus 70 ~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~ 148 (765)
T PRK10049 70 TLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ 148 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 888888888888888888888899999999999999999998888 777 888899999999999999999999999998
Q ss_pred chHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh-----HHHHHHHHHH-----
Q 002100 619 YMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS-----LLRFRQSLLL----- 688 (967)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~-----~~~~~~g~~~----- 688 (967)
+..++ ..++.++...++.++| +..++++.. .|... .....+..+.
T Consensus 149 ~~~~~------~~la~~l~~~~~~e~A------------------l~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 149 TQQYP------TEYVQALRNNRLSAPA------------------LGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred CHHHH------HHHHHHHHHCCChHHH------------------HHHHHhCCC-CHHHHHHHHHHHHHHHHHhhccccc
Confidence 88887 5556666666666666 555555444 33310 0111111111
Q ss_pred HHhcCH---HHHHHHHHHHHhcCCchhHH-------HHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhc
Q 002100 689 LRLNSQ---KAAMRSLRLARNYSTSEHEK-------LVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADS 758 (967)
Q Consensus 689 ~~~g~~---~~A~~~l~~al~~~p~~~~a-------~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~ 758 (967)
...+++ ++|+..++.+++..|.++.. .......++..|++++|+..|+++++..+..+
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P------------ 271 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIP------------ 271 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCC------------
Confidence 222344 77888888888664433322 22212234677999999999999887754211
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH------HHHHHHHHHHHHhC
Q 002100 759 SLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT------RAHQGLARVYHLKN 832 (967)
Q Consensus 759 ~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~------~a~~~la~~~~~~g 832 (967)
. .+...+|.+|...|++++|+..|+++++.++. .....++.++..+|
T Consensus 272 -------------------------~--~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 272 -------------------------P--WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred -------------------------H--HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 1 12333588999999999999999998875432 35677888889999
Q ss_pred CHHHHHHHHHHHHHHccC-------------C--HHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 002100 833 QRKAAYDEMTKLIEKARN-------------N--ASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLM 893 (967)
Q Consensus 833 ~~~~A~~~~~~al~~~p~-------------~--~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~ 893 (967)
++++|+..++++.+..|. + ..++..++. .+++++|+..+++++...|.++.++..+|.++.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999988763 1 234444442 299999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHH
Q 002100 894 DDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYD 956 (967)
Q Consensus 894 ~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~ 956 (967)
..|++++|++.++++++++|+ ...++.+|.++..+|++++|...++++++.+|+++.+..+-.
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~ 468 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLAR 468 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999 468889999999999999999999999999999998766443
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=3.1e-26 Score=275.09 Aligned_cols=315 Identities=14% Similarity=0.079 Sum_probs=208.6
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
++|+..+..++...|++..+++.+|.+....|++++|+..|++++..+| ++.++..+|.++...|++++|+..|++++.
T Consensus 59 ~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~ 138 (656)
T PRK15174 59 DVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL 138 (656)
T ss_pred chhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666777777777777776666 666666667776667777777777777766
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCH
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQ 694 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~ 694 (967)
++|++..++ ..++.++...+++++| +..+.+++..+|..+..+...+ .+...|++
T Consensus 139 l~P~~~~a~------~~la~~l~~~g~~~eA------------------~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~ 193 (656)
T PRK15174 139 AFSGNSQIF------ALHLRTLVLMDKELQA------------------ISLARTQAQEVPPRGDMIATCL-SFLNKSRL 193 (656)
T ss_pred hCCCcHHHH------HHHHHHHHHCCChHHH------------------HHHHHHHHHhCCCCHHHHHHHH-HHHHcCCH
Confidence 666666666 4556666666666666 5666666666666666555443 35666777
Q ss_pred HHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHH
Q 002100 695 KAAMRSLRLARNYSTS-EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLE 773 (967)
Q Consensus 695 ~~A~~~l~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le 773 (967)
++|+..++++++.+|. .......++.++...|++++|+..++++++.+|++.
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~--------------------------- 246 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGA--------------------------- 246 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH---------------------------
Confidence 7777776666666542 223334456666666777777777777766666444
Q ss_pred HHhcCCCCCCchHHHHHHhHHHHHhcccHHH----HHHHHHHHhccCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002100 774 EALRCPSDGLRKGQALNNLGSVYVDCEKLDL----AADCYMNALNIKH--TRAHQGLARVYHLKNQRKAAYDEMTKLIEK 847 (967)
Q Consensus 774 ~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~----A~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 847 (967)
.+++++|.++...|++++ |+..|+++++.+| ..++..+|.++..+|++++|+..++++++.
T Consensus 247 -------------~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 247 -------------ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred -------------HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 566666777777776664 6666776666333 346666677777777777777777777777
Q ss_pred ccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 002100 848 ARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL 915 (967)
Q Consensus 848 ~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~ 915 (967)
+|+++.++..++. .|++++|+..|+++++.+|++...+..+|.++...|++++|+..|+++++..|+.
T Consensus 314 ~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 314 HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 7766666666653 2666777777777777777766666666777777788888888888887777773
No 15
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.6e-26 Score=242.71 Aligned_cols=432 Identities=12% Similarity=0.100 Sum_probs=317.7
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCC
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCS 534 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~ 534 (967)
..+.++-..|+-++..|+|++||++|..|++..|....++ .+...+|...+.|
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFY-------------------------sNraAcY~~lgd~-- 165 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFY-------------------------SNRAACYESLGDW-- 165 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhh-------------------------hhHHHHHHHHhhH--
Confidence 4466788899999999999999999999999988754444 2336677777766
Q ss_pred hHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC--ChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 535 GKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV--SPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
++-+++..+|++++|+...+++.|+.++..+|++++|+....-.--+.- +...-..+-+++-. .|.....+-
T Consensus 166 -~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~ 239 (606)
T KOG0547|consen 166 -EKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKK-----QAMKKAKEK 239 (606)
T ss_pred -HHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHH-----HHHHHHHHh
Confidence 9999999999999999999999999999999999999988765432222 22211111122211 122222222
Q ss_pred HH--hCCCchHHhhhhhh---hhhHhhhHHHhhchhhHhh-HHHHHhhhccccc---cchHHHHHHHHhc----CCCC--
Q 002100 613 LT--LDPSYMMFYGQLHG---DNLVETLQPLVQQWSQADC-WMQLYDRWSSVDD---IGSLAVVHHMLAN----DPGK-- 677 (967)
Q Consensus 613 l~--l~p~~~~~~~~~~~---~~~~~~l~~~~~~~~~A~~-~~~l~~~~~~~d~---~~al~~~~~~l~~----~p~~-- 677 (967)
+. ..|.-+.+-. +.+ .+.-..........+++|. .+.-++......+ ..+...+.+.... -..+
T Consensus 240 ~k~nr~p~lPS~~f-i~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~ 318 (606)
T KOG0547|consen 240 LKENRPPVLPSATF-IASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEI 318 (606)
T ss_pred hcccCCCCCCcHHH-HHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhcccccc
Confidence 22 1111111000 000 0000000000000011100 0000110000000 0011111111100 0111
Q ss_pred -------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Q 002100 678 -------SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFL 750 (967)
Q Consensus 678 -------~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 750 (967)
...+...|..++-.|++..|...|+.++.++|.+...|..+|.+|.+..+.++-.+.|.+|..++|+++
T Consensus 319 d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~---- 394 (606)
T KOG0547|consen 319 DAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP---- 394 (606)
T ss_pred chhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC----
Confidence 455667788888999999999999999999999999999999999999999999999999999999777
Q ss_pred HHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHH
Q 002100 751 KAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVY 828 (967)
Q Consensus 751 ~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~ 828 (967)
..|+.+|.+++-.++|++|+..|++++.++|.. ++..++-+.
T Consensus 395 ------------------------------------dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~ 438 (606)
T KOG0547|consen 395 ------------------------------------DVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCAL 438 (606)
T ss_pred ------------------------------------chhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH
Confidence 899999999999999999999999999977765 888999999
Q ss_pred HHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCC------CchHHHHHHHHHHh-CCC
Q 002100 829 HLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPM------RTYPYRYRAAVLMD-DHK 897 (967)
Q Consensus 829 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~------~~~~~~~la~~~~~-~g~ 897 (967)
++++++++++..|+.+++..|+.+++|...++. ++++.|++.|++|+++.|. ++.++...|.+..+ .++
T Consensus 439 Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d 518 (606)
T KOG0547|consen 439 YRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhh
Confidence 999999999999999999999999999998853 8999999999999999999 77777777765443 489
Q ss_pred HHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 002100 898 EAEAIAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATE 960 (967)
Q Consensus 898 ~~eAi~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~ 960 (967)
+.+|+..+++|++++|..+ ++..+|.+..++|+.++|++.|++++.+.-.-.+++.+++-.+-
T Consensus 519 ~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~a~s~aeA 582 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMVHAYSLAEA 582 (606)
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999965 99999999999999999999999999999888888887765543
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=4.7e-26 Score=273.53 Aligned_cols=348 Identities=13% Similarity=0.029 Sum_probs=308.8
Q ss_pred CCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhh
Q 002100 551 TLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGD 629 (967)
Q Consensus 551 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 629 (967)
++..-....+..+...|++++|+..++.++...| ++++++.+|.+....|++++|+..|++++..+|++..++
T Consensus 40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~------ 113 (656)
T PRK15174 40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDV------ 113 (656)
T ss_pred ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHH------
Confidence 3444455667888999999999999999999999 899999999999999999999999999999999999998
Q ss_pred hhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 002100 630 NLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYST 709 (967)
Q Consensus 630 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p 709 (967)
..++.++...+++++| +..+.++++.+|+++.++..++.++...|++++|+..+++++...|
T Consensus 114 ~~la~~l~~~g~~~~A------------------i~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P 175 (656)
T PRK15174 114 LLVASVLLKSKQYATV------------------ADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP 175 (656)
T ss_pred HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Confidence 7889999999999999 9999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHH
Q 002100 710 SEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQAL 789 (967)
Q Consensus 710 ~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~ 789 (967)
+++.++..++ .+...|++++|+..+++++..+|... ....
T Consensus 176 ~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~---------------------------------------~~~~ 215 (656)
T PRK15174 176 PRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALER---------------------------------------QESA 215 (656)
T ss_pred CCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcc---------------------------------------hhHH
Confidence 9988887764 48889999999999999988765211 0234
Q ss_pred HHhHHHHHhcccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHccCCHHHHHHHHcc--
Q 002100 790 NNLGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLARVYHLKNQRKA----AYDEMTKLIEKARNNASAYEKRSEY-- 861 (967)
Q Consensus 790 ~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~~~~~-- 861 (967)
..++.++...|++++|+..|+++++.+ ...++..+|.++..+|++++ |+..|+++++.+|+++.++..++..
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 295 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI 295 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 556788899999999999999999954 45589999999999999986 8999999999999999999999853
Q ss_pred --CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHH
Q 002100 862 --CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDC 938 (967)
Q Consensus 862 --~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~ 938 (967)
|++++|+..++++++++|+++.++.++|.++...|++++|+..|+++++.+|+.. .+..+|.++...|++++|+..|
T Consensus 296 ~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 296 RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999954 5556799999999999999999
Q ss_pred HHHHhcCCCch-----hHHHHHHHHHhhh
Q 002100 939 EAALCLDPNHT-----DTLELYDKATERV 962 (967)
Q Consensus 939 ~~al~~~P~~~-----~~l~l~~r~~~~~ 962 (967)
+++++.+|++. ++...+.++.+..
T Consensus 376 ~~al~~~P~~~~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 376 EHYIQARASHLPQSFEEGLLALDGQISAV 404 (656)
T ss_pred HHHHHhChhhchhhHHHHHHHHHHHHHhc
Confidence 99999998843 3444444444433
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=3.3e-24 Score=263.04 Aligned_cols=381 Identities=13% Similarity=0.014 Sum_probs=280.6
Q ss_pred hCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhh
Q 002100 548 LDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQL 626 (967)
Q Consensus 548 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 626 (967)
..|.++.-..-...+..-.|++++|++.+.++...+| ...++..+|.++...|++++|+..|+++++++|++..++
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~--- 86 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQ--- 86 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---
Confidence 4455555555556667777778888877777777666 666777777778888888888888888887777777766
Q ss_pred hhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002100 627 HGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARN 706 (967)
Q Consensus 627 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~ 706 (967)
..++.++...+++++| +..++++++.+|.++. +..+|.++...|++++|+..++++++
T Consensus 87 ---~~la~~l~~~g~~~eA------------------~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 87 ---RGLILTLADAGQYDEA------------------LVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred ---HHHHHHHHHCCCHHHH------------------HHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5566677777777777 7777777777777777 77778888888888888888888888
Q ss_pred cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHH-------HHHHHHHhhhcCCCCCch---HHHHHHHHHHh
Q 002100 707 YSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEA-------FFLKAYALADSSLNPESS---AYVIQLLEEAL 776 (967)
Q Consensus 707 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~-------~~~~~~~la~~~~~~~~~---~~a~~~le~~~ 776 (967)
..|++..++..++.++...++.++|+..++++.. .|+... .......+.......+.. +.++..++.+.
T Consensus 145 ~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 145 RAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred hCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 8888877777778877777777778877776665 543210 001111111111111222 45666666666
Q ss_pred cCCCCCC----chHHHHHH-hHHHHHhcccHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 002100 777 RCPSDGL----RKGQALNN-LGSVYVDCEKLDLAADCYMNALNIK---HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKA 848 (967)
Q Consensus 777 ~~~~~~~----~~~~a~~~-lg~~~~~~g~~~~A~~~~~~Al~~~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 848 (967)
+.....| ....+... ++ ++...|++++|+..|+++++.+ |..+...+|.+|..+|++++|+..|+++++.+
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred hhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 5433332 22233333 44 4467799999999999999864 55567778999999999999999999999988
Q ss_pred cCCH----HHHHHHH----ccCChHHHHHHHHHhhccCCCC---------------chHHHHHHHHHHhCCCHHHHHHHH
Q 002100 849 RNNA----SAYEKRS----EYCDRDMAKSDLSMATQLDPMR---------------TYPYRYRAAVLMDDHKEAEAIAEL 905 (967)
Q Consensus 849 p~~~----~~~~~~~----~~~~~~~A~~~l~~al~l~p~~---------------~~~~~~la~~~~~~g~~~eAi~~~ 905 (967)
|.++ ..+..+. ..+++++|+..++++.+.+|.. ..++..+|.++...|++++|++.+
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7652 2233322 3499999999999999988732 346678999999999999999999
Q ss_pred HHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 002100 906 SRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELY 955 (967)
Q Consensus 906 ~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~ 955 (967)
++++...|+. .++..+|.++...|++++|++.++++++++|++..+.-..
T Consensus 383 ~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~ 433 (765)
T PRK10049 383 RELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ 433 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 9999999994 5999999999999999999999999999999997764433
No 18
>PHA02713 hypothetical protein; Provisional
Probab=99.94 E-value=1e-26 Score=272.80 Aligned_cols=194 Identities=15% Similarity=0.246 Sum_probs=169.6
Q ss_pred ccccccccccCCCCcccEEEEEc-CeEEEehhHHHhccCHHHHHhhcCCCCCCc-cceEEeccCCCCHHHHHHHHHhHcC
Q 002100 241 DISMEDEECSTSDEDWDMSFCIG-NDEIRCVRYKIASLSRPFRTMLYGGFIESR-REKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 241 ~~~~~~~~~~~~~~~~Dv~~~v~-~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~-~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
.+...+.+++.++.+|||+|+|+ |++|+|||.|||++|+||++||.++|.|+. +.+|+|.+ +++++|+.+|+|+||
T Consensus 11 ~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~--v~~~~~~~ll~y~Yt 88 (557)
T PHA02713 11 RVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQM--FDKDAVKNIVQYLYN 88 (557)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEecc--CCHHHHHHHHHHhcC
Confidence 34466677888899999999997 899999999999999999999999999874 78999976 999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhh-------
Q 002100 319 KMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPC------- 391 (967)
Q Consensus 319 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~------- 391 (967)
|++ +.+++++||.+|++|+++.|++.|.++|.+.++ ++||+.++.++..+.+..|.+.|.+|+++||..
T Consensus 89 ~~i---~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~-~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef 164 (557)
T PHA02713 89 RHI---SSMNVIDVLKCADYLLIDDLVTDCESYIKDYTN-HDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAF 164 (557)
T ss_pred CCC---CHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCC-ccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhh
Confidence 974 789999999999999999999999999999999 999999999999999999999999999999995
Q ss_pred -cCCchhHhhhhccch-HHHHHHhhcchHHHHHHHHHHhccCcccccchHHHHHHHH
Q 002100 392 -SMQNPNVMRIFCSAE-ARERLAMVGHASFVLYYFLSQIGMEEDMKSNTTVMLLERL 446 (967)
Q Consensus 392 -~l~~~~~~~ll~s~~-~~~r~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~ll~~l 446 (967)
.++.+.+.++|.+++ +. +..|..+|.++++|+..++..+. ...++++++
T Consensus 165 ~~L~~~~l~~lL~~d~~l~-----v~~Ee~v~eav~~W~~~d~~~r~-~~~~ll~~V 215 (557)
T PHA02713 165 KKTVFEILFDIISTNDNVY-----LYREGYKVTILLKWLEYNYITEE-QLLCILSCI 215 (557)
T ss_pred hhCCHHHHHHHhccccccC-----CCcHHHHHHHHHHHHhcCHHHHH-HHhhhHhhh
Confidence 455566666777765 56 77889999999999998865443 344555544
No 19
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.94 E-value=3.3e-26 Score=266.82 Aligned_cols=200 Identities=18% Similarity=0.228 Sum_probs=185.4
Q ss_pred ccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcC
Q 002100 239 RDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
...+...+..++..+.+|||++.+++++|+|||.|||++||||++||.++++|+.+.+|+|.+ +++++|+.+++|+||
T Consensus 20 ~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~--v~~~~l~~ll~y~Yt 97 (571)
T KOG4441|consen 20 SKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEG--VDPETLELLLDYAYT 97 (571)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEec--CCHHHHHHHHHHhhc
Confidence 334445566778889999999999999999999999999999999999999999999999987 999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhh--------
Q 002100 319 KMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELP-------- 390 (967)
Q Consensus 319 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~-------- 390 (967)
+++ .++.++|++|+.+|++|+++.+++.|..||.+.++ ++||+.+..+|+.|++++|.+.+..|+.+||.
T Consensus 98 ~~i-~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~-~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eef 175 (571)
T KOG4441|consen 98 GKL-EISEDNVQELLEAASLLQIPEVVDACCEFLESQLD-PSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEF 175 (571)
T ss_pred ceE-EechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHh
Confidence 999 99999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hcCCchhHhhhhccchHHHHHHhhcchHHHHHHHHHHhccCcccccchHHHHHHHHH
Q 002100 391 CSMQNPNVMRIFCSAEARERLAMVGHASFVLYYFLSQIGMEEDMKSNTTVMLLERLV 447 (967)
Q Consensus 391 ~~l~~~~~~~ll~s~~~~~r~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~ll~~l~ 447 (967)
..++.+++..++.+++++ +.+|..+|.+++.|+..+...+..+..++++.+.
T Consensus 176 l~L~~~~l~~ll~~d~l~-----v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~vr 227 (571)
T KOG4441|consen 176 LLLSLEELIGLLSSDDLN-----VDSEEEVFEAAMRWVKHDFEEREEHLPALLEAVR 227 (571)
T ss_pred hCCCHHHHHhhccccCCC-----cCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHhcC
Confidence 467778888899999999 9999999999999999988777778888777654
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=99.93 E-value=3.7e-26 Score=264.60 Aligned_cols=175 Identities=17% Similarity=0.144 Sum_probs=156.3
Q ss_pred cccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHH
Q 002100 248 ECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPR 327 (967)
Q Consensus 248 ~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~ 327 (967)
+++-++.+|||++++| ++|+|||+|||++||||++||.++|.|++. +|++...++++++|+.+|+|+|||++ .++.+
T Consensus 15 ~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l-~it~~ 91 (480)
T PHA02790 15 ALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKV-YIDSH 91 (480)
T ss_pred HHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeE-EEecc
Confidence 3445688999999765 599999999999999999999999999965 56653124999999999999999999 99999
Q ss_pred HHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhhcCCc--hhH-----hh
Q 002100 328 LVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQN--PNV-----MR 400 (967)
Q Consensus 328 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~l~~--~~~-----~~ 400 (967)
+|++||.+|++|+++.+++.|.+||.+.++ ++||+.++.+|+.|++++|.+.|.+||++||...... ++| .+
T Consensus 92 nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~-~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~~~ 170 (480)
T PHA02790 92 NVVNLLRASILTSVEFIIYTCINFILRDFR-KEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSMKL 170 (480)
T ss_pred cHHHHHHHHHHhChHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999966543 333 56
Q ss_pred hhccchHHHHHHhhcchHHHHHHHHHHhccC
Q 002100 401 IFCSAEARERLAMVGHASFVLYYFLSQIGME 431 (967)
Q Consensus 401 ll~s~~~~~r~~~~~~e~~~l~~~l~~l~~~ 431 (967)
+|.++++. +.+|..+|.+++.|+..+
T Consensus 171 lLssd~L~-----v~~Ee~V~eav~~Wl~~~ 196 (480)
T PHA02790 171 ILESDELN-----VPDEDYVVDFVIKWYMKR 196 (480)
T ss_pred hcccccCC-----CccHHHHHHHHHHHHHhh
Confidence 88888888 889999999999999853
No 21
>PHA03098 kelch-like protein; Provisional
Probab=99.93 E-value=1.3e-25 Score=266.44 Aligned_cols=184 Identities=16% Similarity=0.260 Sum_probs=168.4
Q ss_pred cCCCCcccEEEEE--cCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHH
Q 002100 250 STSDEDWDMSFCI--GNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPR 327 (967)
Q Consensus 250 ~~~~~~~Dv~~~v--~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~ 327 (967)
+.++.+|||+|+| +|++|+|||.|||++|+||++||.++|. +.+|+|+ + ++++|+.+|+|+|||++ .++.+
T Consensus 4 ~~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~--~-~~~~~~~~l~y~Ytg~~-~i~~~ 76 (534)
T PHA03098 4 FELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLN--I-DYDSFNEVIKYIYTGKI-NITSN 76 (534)
T ss_pred cccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEec--C-CHHHHHHHHHHhcCCce-EEcHH
Confidence 3468899999998 9999999999999999999999999998 5689995 4 99999999999999999 89999
Q ss_pred HHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhh--------hcCCchhHh
Q 002100 328 LVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELP--------CSMQNPNVM 399 (967)
Q Consensus 328 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~--------~~l~~~~~~ 399 (967)
++.+|+.+|++|+++.|++.|+++|.+.++ .+||+.++.+|..|++..|.+.|.+||.+||. ..++.+.+.
T Consensus 77 ~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~-~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~ 155 (534)
T PHA03098 77 NVKDILSIANYLIIDFLINLCINYIIKIID-DNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELI 155 (534)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhCC-HhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHH
Confidence 999999999999999999999999999999 99999999999999999999999999999998 456677788
Q ss_pred hhhccchHHHHHHhhcchHHHHHHHHHHhccCcccccchHHHHHHHH
Q 002100 400 RIFCSAEARERLAMVGHASFVLYYFLSQIGMEEDMKSNTTVMLLERL 446 (967)
Q Consensus 400 ~ll~s~~~~~r~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~ll~~l 446 (967)
.+|.++++. +.+|..++.+++.|+..+...+.....++++++
T Consensus 156 ~ll~~~~L~-----v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~v 197 (534)
T PHA03098 156 KILSDDKLN-----VSSEDVVLEIIIKWLTSKKNNKYKDICLILKVL 197 (534)
T ss_pred HHhcCCCcC-----cCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhc
Confidence 888888888 889999999999999988777777766666654
No 22
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8e-23 Score=220.48 Aligned_cols=426 Identities=16% Similarity=0.171 Sum_probs=315.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHH
Q 002100 460 FHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKM 539 (967)
Q Consensus 460 ~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~ 539 (967)
....|...+..|+|+.|+.+|..|+.++|.....+ .+...+|..++.| .+|+
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvly-------------------------Snrsaa~a~~~~~---~~al 56 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLY-------------------------SNRSAAYASLGSY---EKAL 56 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchh-------------------------cchHHHHHHHhhH---HHHH
Confidence 44678899999999999999999999988643332 3446677888877 9999
Q ss_pred HHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc------------------
Q 002100 540 MDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE------------------ 600 (967)
Q Consensus 540 ~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g------------------ 600 (967)
++-.+.++++|+-+..|..+|..+.-+|+|++|+..|.+.++.+| +...+..++.++...-
T Consensus 57 ~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~ 136 (539)
T KOG0548|consen 57 KDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANL 136 (539)
T ss_pred HHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999 8888888888883221
Q ss_pred ---CHHHHHHHHHHHHHh---CCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhcc-----cccc--------
Q 002100 601 ---DYDGALRDVRALLTL---DPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSS-----VDDI-------- 661 (967)
Q Consensus 601 ---~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~-----~d~~-------- 661 (967)
++-..-..|.+.++. +|.+...+.. .-.+-...+.....+.. .+...+. ....
T Consensus 137 p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~------d~r~m~a~~~l~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~ 208 (539)
T KOG0548|consen 137 PLTNYSLSDPAYVKILEIIQKNPTSLKLYLN------DPRLMKADGQLKGVDEL--LFYASGIEILASMAEPCKQEHNGF 208 (539)
T ss_pred hhhhhhhccHHHHHHHHHhhcCcHhhhcccc------cHHHHHHHHHHhcCccc--cccccccccCCCCCCcccccCCCC
Confidence 011112233333333 3333332211 00000000000000000 0000000 0000
Q ss_pred chHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 662 GSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISI 741 (967)
Q Consensus 662 ~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 741 (967)
.-+....+-.+ .-......-.+|.......++..|++.|..+++++ .+...+.+.+.+|+..|.+.+.+.....+++.
T Consensus 209 ~~~~d~~ee~~-~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~ 286 (539)
T KOG0548|consen 209 PIIEDNTEERR-VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEV 286 (539)
T ss_pred CccchhHHHHH-HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH
Confidence 00000000000 00112334578999999999999999999999999 88889999999999999999999999998866
Q ss_pred ccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHH
Q 002100 742 QRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAH 821 (967)
Q Consensus 742 ~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~ 821 (967)
.......+. + ...++..+|..|...++++.|+.+|++++....+
T Consensus 287 gre~rad~k--------------------l-------------Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--- 330 (539)
T KOG0548|consen 287 GRELRADYK--------------------L-------------IAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--- 330 (539)
T ss_pred hHHHHHHHH--------------------H-------------HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---
Confidence 653321110 0 1245556899999999999999999999884433
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCC
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHK 897 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~ 897 (967)
..+.-.....+++........-.+|..+......|. .+++..|+..|.+|+..+|+++..|.++|.+|.+.+.
T Consensus 331 ---~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~ 407 (539)
T KOG0548|consen 331 ---PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGE 407 (539)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhh
Confidence 455666777888888888888888877665555563 3999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 898 EAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 898 ~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
+..|++..+++++++|+. .+|...|.++..+.+|++|++.|+++++.+|++.++.+.+.|+.+..
T Consensus 408 ~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 408 YPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999999995 58999999999999999999999999999999999999999988753
No 23
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.6e-23 Score=218.27 Aligned_cols=392 Identities=18% Similarity=0.142 Sum_probs=295.1
Q ss_pred ccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHH
Q 002100 518 DYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWIS 596 (967)
Q Consensus 518 ~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~ 596 (967)
.+.+.|+-++..+.| ++||++|++||+++|+.+..|.+++.+|...|+|++-++...++++++| ...+++.++..+
T Consensus 117 ~lK~~GN~~f~~kkY---~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKY---DEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAH 193 (606)
T ss_pred HHHhhhhhhhhcccH---HHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Confidence 345668888888888 9999999999999999999999999999999999999999999999999 789999999999
Q ss_pred HHhcCHHHHHHHHHHHHHhC-CCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHh--hhccccccchHHHHHHHHhc
Q 002100 597 IALEDYDGALRDVRALLTLD-PSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYD--RWSSVDDIGSLAVVHHMLAN 673 (967)
Q Consensus 597 ~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~--~~~~~d~~~al~~~~~~l~~ 673 (967)
..+|++++|+.+....--+. =++.... -+...+....+.- ++. +.+. +-.-......+..|-..+..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~------~~~eR~Lkk~a~~-ka~---e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIE------PMAERVLKKQAMK-KAK---EKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhH------HHHHHHHHHHHHH-HHH---HhhcccCCCCCCcHHHHHHHHhhccc
Confidence 99999999999876543321 1111111 1111111111110 110 0011 00111111123333333332
Q ss_pred CCC-------C-hHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcC----Cc---------hhHHHHHHHHHHHHcCChH
Q 002100 674 DPG-------K-SLLRFRQSLLLLRLN---SQKAAMRSLRLARNYS----TS---------EHEKLVYEGWILYDTGHRE 729 (967)
Q Consensus 674 ~p~-------~-~~~~~~~g~~~~~~g---~~~~A~~~l~~al~~~----p~---------~~~a~~~lg~~~~~~g~~~ 729 (967)
+|. + +..-..-+.-++..+ .|..|...+.+..... .. .++++...|..++-.|++-
T Consensus 264 ~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 264 DPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred cccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 221 1 122222222222223 6777777776654321 11 2567888899999999999
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHH
Q 002100 730 EALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCY 809 (967)
Q Consensus 730 eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~ 809 (967)
.|...++++|+++|.+. ..|..+|.+|.+..+.++-...|
T Consensus 344 ~a~~d~~~~I~l~~~~~----------------------------------------~lyI~~a~~y~d~~~~~~~~~~F 383 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFN----------------------------------------SLYIKRAAAYADENQSEKMWKDF 383 (606)
T ss_pred hhhhhHHHHHhcCcccc----------------------------------------hHHHHHHHHHhhhhccHHHHHHH
Confidence 99999999999999665 55888999999999999999999
Q ss_pred HHHhccCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHH--cc--CChHHHHHHHHHhhccCCCCch
Q 002100 810 MNALNIKHT--RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS--EY--CDRDMAKSDLSMATQLDPMRTY 883 (967)
Q Consensus 810 ~~Al~~~~~--~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~--~~--~~~~~A~~~l~~al~l~p~~~~ 883 (967)
++|..+++. ++|+.+|.+++.++++++|+..|++++.++|+++.+|.+++ .| +++++++..|+.+.+.-|+.++
T Consensus 384 ~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~E 463 (606)
T KOG0547|consen 384 NKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPE 463 (606)
T ss_pred HHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 999997765 49999999999999999999999999999999999999988 34 7899999999999999999999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCchhHHHHH
Q 002100 884 PYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-------QLLHLRAAFHDS-MGDHLHTQRDCEAALCLDPNHTDTLELY 955 (967)
Q Consensus 884 ~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-------~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~P~~~~~l~l~ 955 (967)
.+...|.++..++++++|++.|.+++++.|.. ..+...|.+..+ .+|+.+|+..+++|+++||.-..+.+.+
T Consensus 464 vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tl 543 (606)
T KOG0547|consen 464 VYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETL 543 (606)
T ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHH
Confidence 99999999999999999999999999999982 134444433222 2899999999999999999988887777
Q ss_pred HHHHhhh
Q 002100 956 DKATERV 962 (967)
Q Consensus 956 ~r~~~~~ 962 (967)
.+++=+.
T Consensus 544 aq~~lQ~ 550 (606)
T KOG0547|consen 544 AQFELQR 550 (606)
T ss_pred HHHHHHH
Confidence 7765443
No 24
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.93 E-value=5.5e-26 Score=233.02 Aligned_cols=190 Identities=23% Similarity=0.326 Sum_probs=168.6
Q ss_pred ccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcC
Q 002100 239 RDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
.++++.+.++.+.+.+++||+|+|++++|+|||+|||+||.|||+|++|+|.|+.+..|.+.+ -..++|+++|+||||
T Consensus 28 ~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~--t~~eAF~~lLrYiYt 105 (620)
T KOG4350|consen 28 SNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQE--TNSEAFRALLRYIYT 105 (620)
T ss_pred ccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccccc--ccHHHHHHHHHHHhh
Confidence 445566777888999999999999999999999999999999999999999999999999987 889999999999999
Q ss_pred CCCC--CCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhhcCCch
Q 002100 319 KMLD--SFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNP 396 (967)
Q Consensus 319 ~~~~--~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~l~~~ 396 (967)
|++. .+..+.+++.|.+|++|+...|.....++|+..+. .+|++.+++.|..|++++|.+.|+.|+.+|....+..+
T Consensus 106 g~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~-~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~ 184 (620)
T KOG4350|consen 106 GKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILK-NENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDP 184 (620)
T ss_pred cceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHc-ccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCc
Confidence 9996 56788899999999999999999999999999999 99999999999999999999999999999999888887
Q ss_pred hHhhhhccchHHHHHHh---hcchHHHHHHHHHHhccCc
Q 002100 397 NVMRIFCSAEARERLAM---VGHASFVLYYFLSQIGMEE 432 (967)
Q Consensus 397 ~~~~ll~s~~~~~r~~~---~~~e~~~l~~~l~~l~~~~ 432 (967)
.|..+-+ +.+.+-|.. ..++..+|.++..|.....
T Consensus 185 sFn~LSk-~sL~e~l~RDsFfApE~~IFlAv~~W~~~Ns 222 (620)
T KOG4350|consen 185 SFNRLSK-DSLKELLARDSFFAPELKIFLAVRSWHQNNS 222 (620)
T ss_pred chhhhhH-HHHHHHHhhhcccchHHHHHHHHHHHHhcCc
Confidence 7765433 334433333 4577889999999998654
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=2.1e-21 Score=233.24 Aligned_cols=444 Identities=14% Similarity=0.046 Sum_probs=307.9
Q ss_pred hchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhH--HHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHH
Q 002100 452 ESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYS--LVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQER 529 (967)
Q Consensus 452 ~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a--~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~ 529 (967)
-.|..+...+..+.+.++.|+|+.|+..|+++++.+|... ..-++.++...|+.
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~------------------------ 84 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRD------------------------ 84 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCc------------------------
Confidence 3445566788899999999999999999999999988652 33555555444444
Q ss_pred hhcCChHHHHHHHHHhHhhCCCCchhHHHH--HHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHH
Q 002100 530 SLYCSGKEKMMDLNTATELDPTLSYPYKYR--AILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGAL 606 (967)
Q Consensus 530 ~~y~~~~~A~~~~~~al~l~P~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~ 606 (967)
++|+..+++++ +|.+...+..+ |.++..+|++++|++.|+++++.+| ++.++..++.+|...++.++|+
T Consensus 85 ------~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl 156 (822)
T PRK14574 85 ------QEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVL 156 (822)
T ss_pred ------HHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHH
Confidence 66777777776 44444444444 6677777777777777777777777 6777777777777777777777
Q ss_pred HHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHH
Q 002100 607 RDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSL 686 (967)
Q Consensus 607 ~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~ 686 (967)
+.+++++..+|++.... .++.++...+++.+| +..++++++.+|.+..++..+..
T Consensus 157 ~~l~~l~~~dp~~~~~l-------~layL~~~~~~~~~A------------------L~~~ekll~~~P~n~e~~~~~~~ 211 (822)
T PRK14574 157 KQATELAERDPTVQNYM-------TLSYLNRATDRNYDA------------------LQASSEAVRLAPTSEEVLKNHLE 211 (822)
T ss_pred HHHHHhcccCcchHHHH-------HHHHHHHhcchHHHH------------------HHHHHHHHHhCCCCHHHHHHHHH
Confidence 77777777777743322 122333333333334 77777777777777777777777
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCchhHHHHHH--HHHHHH---------cC---ChHHHHHHHHHHHh---cccchHHHH
Q 002100 687 LLLRLNSQKAAMRSLRLARNYSTSEHEKLVYE--GWILYD---------TG---HREEALAKAEESIS---IQRSFEAFF 749 (967)
Q Consensus 687 ~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~l--g~~~~~---------~g---~~~eA~~~~~~al~---~~p~~~~~~ 749 (967)
++.+.|-...|.+..++--.........+... +.-..+ .. -.+.|+..++..+. ..|.....+
T Consensus 212 ~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~ 291 (822)
T PRK14574 212 ILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADY 291 (822)
T ss_pred HHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHH
Confidence 77777777777765544222211111111111 111111 11 23446666666665 333322222
Q ss_pred HHHH-HhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC------cHH--H
Q 002100 750 LKAY-ALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK------HTR--A 820 (967)
Q Consensus 750 ~~~~-~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~------~~~--a 820 (967)
..+. .---.....+....++..++.+......-|. .+....|..|+..++.++|+..|+.++... +.. .
T Consensus 292 ~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~--y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~ 369 (822)
T PRK14574 292 QRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD--YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLD 369 (822)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH--HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHH
Confidence 1111 0000111233456666666666654444343 456678999999999999999999998843 112 3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccC---------------CHHHHHHHHc----cCChHHHHHHHHHhhccCCCC
Q 002100 821 HQGLARVYHLKNQRKAAYDEMTKLIEKARN---------------NASAYEKRSE----YCDRDMAKSDLSMATQLDPMR 881 (967)
Q Consensus 821 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~ 881 (967)
...|-.+|...+++++|..++++..+..|- -..+...++. .|+..+|+..+++.+...|.+
T Consensus 370 ~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n 449 (822)
T PRK14574 370 ADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN 449 (822)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 577889999999999999999999985551 1223333332 299999999999999999999
Q ss_pred chHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHH
Q 002100 882 TYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLEL 954 (967)
Q Consensus 882 ~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l 954 (967)
...+..+|.++...|++.+|...++++..++|+. .+...+|.++..++++.+|....+++++.+|+++.+..+
T Consensus 450 ~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l 523 (822)
T PRK14574 450 QNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQEL 523 (822)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHH
Confidence 9999999999999999999999999999999995 588899999999999999999999999999999988763
No 26
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.92 E-value=1.1e-22 Score=206.08 Aligned_cols=343 Identities=19% Similarity=0.201 Sum_probs=250.6
Q ss_pred chhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc
Q 002100 522 VGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE 600 (967)
Q Consensus 522 ~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g 600 (967)
+|..+..++++ ..|+..|..|++.+|++..+++.+|.+|+.+|+-..|+..+++++++.| ...+...+|.+++++|
T Consensus 44 lGk~lla~~Q~---sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQL---SDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhH---HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 35566666766 9999999999999999999999999999999999999999999999999 6779999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHH
Q 002100 601 DYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLL 680 (967)
Q Consensus 601 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~ 680 (967)
++++|..+|+++|+.+|++...... +..++.+..+..... ++-......|-..++..+.++++..|-+..+
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~ea---qskl~~~~e~~~l~~------ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l 191 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEA---QSKLALIQEHWVLVQ------QLKSASGSGDCQNAIEMITHLLEIQPWDASL 191 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHH---HHHHHhHHHHHHHHH------HHHHHhcCCchhhHHHHHHHHHhcCcchhHH
Confidence 9999999999999999976544411 122233332221111 2233345566677899999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCC
Q 002100 681 RFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSL 760 (967)
Q Consensus 681 ~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~ 760 (967)
+..++.+|...|++..|+..++.+-++..++.+.++.++.+++..|+.+.++....+.++++|+....|
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf----------- 260 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF----------- 260 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999765111
Q ss_pred CCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHH
Q 002100 761 NPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDE 840 (967)
Q Consensus 761 ~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~ 840 (967)
-.|.+.++..+.++..+++ ...++|.++++.
T Consensus 261 ---------------------------------~~YKklkKv~K~les~e~~----------------ie~~~~t~cle~ 291 (504)
T KOG0624|consen 261 ---------------------------------PFYKKLKKVVKSLESAEQA----------------IEEKHWTECLEA 291 (504)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHHHH----------------HhhhhHHHHHHH
Confidence 0112222222222222222 233455556666
Q ss_pred HHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHH
Q 002100 841 MTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-QLLH 919 (967)
Q Consensus 841 ~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~ 919 (967)
.++.++.+|..+.+ .......+..++...+++.+||..+.++++++|++ +++.
T Consensus 292 ge~vlk~ep~~~~i--------------------------r~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~ 345 (504)
T KOG0624|consen 292 GEKVLKNEPEETMI--------------------------RYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLC 345 (504)
T ss_pred HHHHHhcCCcccce--------------------------eeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHH
Confidence 66666555542111 11122234455666667777777777777777663 4666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 920 LRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 920 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
.+|.+|+....|+.|+.+|++|++.+|+|..+.+-+.+++...
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlk 388 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLK 388 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH
Confidence 6777777777777777777777777777776666666555443
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7.4e-21 Score=200.63 Aligned_cols=421 Identities=14% Similarity=0.109 Sum_probs=286.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHH
Q 002100 460 FHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKM 539 (967)
Q Consensus 460 ~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~ 539 (967)
.+.+|..|+..++|+.|.-.++...+....+.. -.+.+..|+.+.-... ...+........ ....+
T Consensus 81 ~y~laks~fd~kEf~Raa~fL~~~~s~k~~FL~---lysk~La~~kk~~e~~-~~~l~~~~~~~~----------~~~~l 146 (559)
T KOG1155|consen 81 IYLLAKSYFDCKEFERAAFFLQNCKSKKSAFLR---LYSKYLAGEKKSEEEM-AELLGRLESFSR----------INSEL 146 (559)
T ss_pred hhhhHhhhhhhHHHHHHHHHHHhcchHHHHHHH---HHHHHHhhhHHHHHHH-HHhhccchhhhh----------hhhHH
Confidence 467889999999999998888876652111111 1122333333221111 111111000000 01111
Q ss_pred HHHHHhHhh----CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 540 MDLNTATEL----DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 540 ~~~~~al~l----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
..+++-++. ...+...++..|.++.+.|....|+..+-.++...| ...+|..++.+... ++.......
T Consensus 147 ~~L~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~ 219 (559)
T KOG1155|consen 147 IELNKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVV 219 (559)
T ss_pred HHHhhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHh
Confidence 222222211 123466777788888888888888888888888777 66666665554321 111222221
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc-CCCChHHHHHHHHHHHHhcC
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN-DPGKSLLRFRQSLLLLRLNS 693 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~-~p~~~~~~~~~g~~~~~~g~ 693 (967)
.-|.+.... ....+..++..+.+.+++ +..+...+.. .|....+....|.+...+.+
T Consensus 220 ~l~~~~h~M----~~~F~~~a~~el~q~~e~------------------~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rD 277 (559)
T KOG1155|consen 220 GLPSDMHWM----KKFFLKKAYQELHQHEEA------------------LQKKERLSSVGFPNSMYIKTQIAAASYNQRD 277 (559)
T ss_pred cCcccchHH----HHHHHHHHHHHHHHHHHH------------------HHHHHHHHhccCCccHHHHHHHHHHHhhhhh
Confidence 222111111 113444445544444444 4444444443 45555555555555555555
Q ss_pred HHHHHHHHHHHHhcCCc----------------------------------hhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 694 QKAAMRSLRLARNYSTS----------------------------------EHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 694 ~~~A~~~l~~al~~~p~----------------------------------~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
+++|+..|+...+.+|- .++....+|+.|.-.++.++|+.+|++|+
T Consensus 278 fD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRAL 357 (559)
T KOG1155|consen 278 FDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRAL 357 (559)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHH
Confidence 55555555555555553 33444445666666677888888888888
Q ss_pred hcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH
Q 002100 740 SIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR 819 (967)
Q Consensus 740 ~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 819 (967)
+++|... .+|..+|.-|.++++...|++.|++|++++|.+
T Consensus 358 kLNp~~~----------------------------------------~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D 397 (559)
T KOG1155|consen 358 KLNPKYL----------------------------------------SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD 397 (559)
T ss_pred hcCcchh----------------------------------------HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh
Confidence 8888555 799999999999999999999999999999887
Q ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 002100 820 --AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLM 893 (967)
Q Consensus 820 --a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~ 893 (967)
+|++||..|..++...=|+-+|+++++.-|++...|..+|+. ++.++|+.+|.+|+........++..+|.+|.
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999963 99999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHhc-------CCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 002100 894 DDHKEAEAIAELSRAIAF-------KPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVN 963 (967)
Q Consensus 894 ~~g~~~eAi~~~~kal~~-------~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~ 963 (967)
+.++.++|..+|++.++. .|+ ..+...+|..+.+.+++++|-.+..+++.-++.-.+...++..+...+.
T Consensus 478 ~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKIQA 555 (559)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 999999999999999983 343 2356669999999999999999999999998887777777776666543
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.3e-20 Score=196.96 Aligned_cols=362 Identities=15% Similarity=0.102 Sum_probs=291.6
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCch--hHHHHHHHHHHhcCChHHHHHHHHHHHhccCc---------chh
Q 002100 456 KQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHI--YSLVGVARTKFKRGHKYSAYKLMNSLISDYTP---------VGW 524 (967)
Q Consensus 456 ~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~--~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~---------~g~ 524 (967)
+...+|..|.++.+.|....|+..|..++..-|. .++..|..+. .-++.+..++...+. .+.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~li-------t~~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELI-------TDIEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhh-------chHHHHHHHHhcCcccchHHHHHHHHH
Confidence 4677889999999999999999999999988773 3444444422 223333333332221 233
Q ss_pred HHHHHhhcCChHHHHHHHHHhHhh-CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCH
Q 002100 525 MYQERSLYCSGKEKMMDLNTATEL-DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDY 602 (967)
Q Consensus 525 ~~~~~~~y~~~~~A~~~~~~al~l-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~ 602 (967)
++++.. +.++++..+...+.. .|++...-...|.+.+.+.++++|+..|+.+.+.+| ..+-.-...++++-.++-
T Consensus 236 a~~el~---q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 236 AYQELH---QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHH---HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 455555 448999999988888 899999999999999999999999999999999999 666556666666666654
Q ss_pred HHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHH
Q 002100 603 DGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRF 682 (967)
Q Consensus 603 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~ 682 (967)
.+-.-.-+.+..++.--+..- -.+|+-|...++.++| +.+|+++++++|....+|.
T Consensus 313 skLs~LA~~v~~idKyR~ETC------CiIaNYYSlr~eHEKA------------------v~YFkRALkLNp~~~~aWT 368 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETC------CIIANYYSLRSEHEKA------------------VMYFKRALKLNPKYLSAWT 368 (559)
T ss_pred HHHHHHHHHHHHhccCCccce------eeehhHHHHHHhHHHH------------------HHHHHHHHhcCcchhHHHH
Confidence 443334445555554333333 4457777888888888 9999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCC
Q 002100 683 RQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNP 762 (967)
Q Consensus 683 ~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~ 762 (967)
.+|.-|..+++...|+.+|++|++++|.+..+|+.+|..|.-++.+.=|+-+|++|+...|++.
T Consensus 369 LmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs---------------- 432 (559)
T KOG1155|consen 369 LMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDS---------------- 432 (559)
T ss_pred HhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999776
Q ss_pred CchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH--HHHHHHHHHHHHhCCHHHHHHH
Q 002100 763 ESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT--RAHQGLARVYHLKNQRKAAYDE 840 (967)
Q Consensus 763 ~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~--~a~~~la~~~~~~g~~~~A~~~ 840 (967)
..|..||.+|.+.++.++|+.||.+|+..+.+ .++..||.+|.++++..+|...
T Consensus 433 ------------------------Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 433 ------------------------RLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred ------------------------HHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 78999999999999999999999999998777 5999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 841 MTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 841 ~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
|.+.++.. ...-..+|.-..+...+|.-+.+.+++++|..+..+++..++.
T Consensus 489 yek~v~~~-----------------------~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 489 YEKYVEVS-----------------------ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred HHHHHHHH-----------------------HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 99888732 1122345555667777999999999999999999999887555
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.90 E-value=3.7e-21 Score=200.83 Aligned_cols=455 Identities=13% Similarity=0.073 Sum_probs=335.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh--ccC-------cchhHHHHHhhcCChHHHHHHHHHhHhhCCCC-----chhH
Q 002100 491 SLVGVARTKFKRGHKYSAYKLMNSLIS--DYT-------PVGWMYQERSLYCSGKEKMMDLNTATELDPTL-----SYPY 556 (967)
Q Consensus 491 a~~~la~~~~~~g~~~~A~~~l~~~i~--~~~-------~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~-----~~~~ 556 (967)
.+..||.-|....-..+|+..|+-++. .++ +.|.+|++...| .+|++.|+.|+..-|.- ...+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~f---skaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREF---SKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhH---HHHHHHHHHHHhhccccchhhHHHHH
Confidence 344566655544455577777776665 333 457888888877 99999999999988753 4567
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCch---------HHhhh
Q 002100 557 KYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTL--DPSYM---------MFYGQ 625 (967)
Q Consensus 557 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~p~~~---------~~~~~ 625 (967)
.+.|..+.+.|+|+.|+..|+..++..|+..+-+++..+++..|+-++-.+.|.+.+.+ .|++. ...
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~-- 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN-- 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH--
Confidence 88899999999999999999999999999888889999999999999999999999976 12111 111
Q ss_pred hhhhhhHhhhHHHhhchhhHhhH-HHHHhhh--------ccccccchHHHHHHHHhc---CCCChHHHHHHHHHHHHhcC
Q 002100 626 LHGDNLVETLQPLVQQWSQADCW-MQLYDRW--------SSVDDIGSLAVVHHMLAN---DPGKSLLRFRQSLLLLRLNS 693 (967)
Q Consensus 626 ~~~~~~~~~l~~~~~~~~~A~~~-~~l~~~~--------~~~d~~~al~~~~~~l~~---~p~~~~~~~~~g~~~~~~g~ 693 (967)
+ ..-++-.-.+.+|++-..- .+-+... -..+-.....+.-..++. .|--..+-...+.-|++.|+
T Consensus 358 l---l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 358 L---LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred H---HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 0 1112222233333322000 0000000 000000000111111111 11112233466778889999
Q ss_pred HHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHc--CChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHH
Q 002100 694 QKAAMRSLRLARNYSTSEH-EKLVYEGWILYDT--GHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQ 770 (967)
Q Consensus 694 ~~~A~~~l~~al~~~p~~~-~a~~~lg~~~~~~--g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~ 770 (967)
++.|++.++-.-+.+.... .+-.++..+++.+ .++..|.++...++.++.-+++... .-++.....+..+++.+
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~---nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALT---NKGNIAFANGDLDKAAE 511 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhh---cCCceeeecCcHHHHHH
Confidence 9999998876655544332 3445566666654 3678888999999988875552211 22233345567788888
Q ss_pred HHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 002100 771 LLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKA 848 (967)
Q Consensus 771 ~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 848 (967)
.+.+++.. ...-.++++++|..+..+|++++|+++|-+.-. .+...+++.+|.+|..+.+..+|++++.++..+-
T Consensus 512 ~ykeal~n---dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sli 588 (840)
T KOG2003|consen 512 FYKEALNN---DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI 588 (840)
T ss_pred HHHHHHcC---chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC
Confidence 88888764 334558999999999999999999999988655 6777899999999999999999999999999999
Q ss_pred cCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHH
Q 002100 849 RNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ-LLHLRAA 923 (967)
Q Consensus 849 p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~-~~~~~a~ 923 (967)
|+++.++..++.+ |+..+|..++-...+.-|.+.+....+|..|....-+++||.+|+++--+.|+-. -..+.+.
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmias 668 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIAS 668 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 9999999999954 8899999999999999999999999999999999999999999999999999954 4556799
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 002100 924 FHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 924 ~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~ 959 (967)
++.+.|+|++|...|+.....+|.+.+-+..+.|+-
T Consensus 669 c~rrsgnyqka~d~yk~~hrkfpedldclkflvri~ 704 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIA 704 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHh
Confidence 999999999999999999999999999888887764
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3.2e-22 Score=221.08 Aligned_cols=297 Identities=19% Similarity=0.155 Sum_probs=211.8
Q ss_pred HHHHHHHHH--hcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhH
Q 002100 556 YKYRAILLV--EENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLV 632 (967)
Q Consensus 556 ~~~la~~~~--~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 632 (967)
+..+|..|. .+-+..+|+..|.+.-...+ ...++..+|..|+.+.+|++|.+.|+.+-.++|--..... ..-
T Consensus 320 lr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~me-----iyS 394 (638)
T KOG1126|consen 320 LRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGME-----IYS 394 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchh-----HHH
Confidence 445555554 45567899999999555556 5688999999999999999999999999998886433320 000
Q ss_pred hhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchh
Q 002100 633 ETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEH 712 (967)
Q Consensus 633 ~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~ 712 (967)
..++.....+ ++.++ .+..+..+|+.|
T Consensus 395 T~LWHLq~~v--------------------~Ls~L---------------------------------aq~Li~~~~~sP 421 (638)
T KOG1126|consen 395 TTLWHLQDEV--------------------ALSYL---------------------------------AQDLIDTDPNSP 421 (638)
T ss_pred HHHHHHHhhH--------------------HHHHH---------------------------------HHHHHhhCCCCc
Confidence 1111111000 11111 123345556666
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHh
Q 002100 713 EKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNL 792 (967)
Q Consensus 713 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~l 792 (967)
+.|..+|+++..+++++.|++.|++|+.++|.+. .+|..+
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa----------------------------------------YayTLl 461 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA----------------------------------------YAYTLL 461 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc----------------------------------------hhhhhc
Confidence 6666666666666666666666666666666555 566666
Q ss_pred HHHHHhcccHHHHHHHHHHHhccCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc----cCChHH
Q 002100 793 GSVYVDCEKLDLAADCYMNALNIKHT--RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE----YCDRDM 866 (967)
Q Consensus 793 g~~~~~~g~~~~A~~~~~~Al~~~~~--~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~ 866 (967)
|.-+....++|.|..+|++|+..++. ++|+++|.+|.++++++.|.-.|++|++++|.+.......|. .++.++
T Consensus 462 GhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~ 541 (638)
T KOG1126|consen 462 GHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDK 541 (638)
T ss_pred CChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhH
Confidence 66666666666666666666664433 366666666666666666666666666666666665555552 266677
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 867 AKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 867 A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
|+..|++|+.++|.++...+.+|.+++..+++++|+..+++.-++-|+. .+++.+|.+|.++|+.+.|+..|--|++++
T Consensus 542 AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 542 ALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 7777788888888999999999999999999999999999999999995 489999999999999999999999999999
Q ss_pred CCchh
Q 002100 946 PNHTD 950 (967)
Q Consensus 946 P~~~~ 950 (967)
|.-.+
T Consensus 622 pkg~~ 626 (638)
T KOG1126|consen 622 PKGAQ 626 (638)
T ss_pred Cccch
Confidence 98665
No 31
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.6e-21 Score=215.49 Aligned_cols=295 Identities=15% Similarity=0.102 Sum_probs=176.7
Q ss_pred HHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHH
Q 002100 525 MYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYD 603 (967)
Q Consensus 525 ~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~ 603 (967)
.|.....| +..+|+..|.+.-...++-.+.+..+|..|+++.+|++|.+.|+.+-...| ..+.......++..+.+--
T Consensus 326 ~~~~~s~y-~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v 404 (638)
T KOG1126|consen 326 GYRSLSQY-NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV 404 (638)
T ss_pred HHHHHHHH-HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH
Confidence 33344444 457888888885566677778888888888888888888888888888888 4433333344444444433
Q ss_pred HHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHH
Q 002100 604 GALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFR 683 (967)
Q Consensus 604 ~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~ 683 (967)
+--...+.+++.+|+.+..| -.+|.++...++++.| +..|+++++++|....+|..
T Consensus 405 ~Ls~Laq~Li~~~~~sPesW------ca~GNcfSLQkdh~~A------------------ik~f~RAiQldp~faYayTL 460 (638)
T KOG1126|consen 405 ALSYLAQDLIDTDPNSPESW------CALGNCFSLQKDHDTA------------------IKCFKRAIQLDPRFAYAYTL 460 (638)
T ss_pred HHHHHHHHHHhhCCCCcHHH------HHhcchhhhhhHHHHH------------------HHHHHHhhccCCccchhhhh
Confidence 33333444555566666665 4445555555555555 55555666666655555555
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCC
Q 002100 684 QSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPE 763 (967)
Q Consensus 684 ~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~ 763 (967)
+|.-+....+++.|+.+|+.|+..+|.+..+|+.+|.+|.++++++.|+-.|++|++++|.+.
T Consensus 461 lGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns----------------- 523 (638)
T KOG1126|consen 461 LGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS----------------- 523 (638)
T ss_pred cCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch-----------------
Confidence 555555556666666666666666666556666666666666666666666666665555443
Q ss_pred chHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhCCHHHHHHHH
Q 002100 764 SSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKNQRKAAYDEM 841 (967)
Q Consensus 764 ~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~A~~~~ 841 (967)
....-+|.++.+.|+.++|+..|++|+.+++.+ ..+..|.+++..+++++|+..+
T Consensus 524 -----------------------vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~L 580 (638)
T KOG1126|consen 524 -----------------------VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQEL 580 (638)
T ss_pred -----------------------hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHH
Confidence 344445555555555555555555555544443 4444555555555555555555
Q ss_pred HHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 842 TKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 842 ~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
+++-+ +-|+...++..+|.+|.+.|+.+.|+..|.=|..++|.
T Consensus 581 EeLk~------------------------------~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 581 EELKE------------------------------LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHH------------------------------hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 44444 44455555666666666666666666666666666666
No 32
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.3e-19 Score=185.28 Aligned_cols=288 Identities=16% Similarity=0.092 Sum_probs=210.6
Q ss_pred HhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccch-HHHH
Q 002100 671 LANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSF-EAFF 749 (967)
Q Consensus 671 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~ 749 (967)
...-|.+..+...+|.++...|++.+|+-.|+++.-++|...+..-..|.++...|+++.-.......+.++... +.+|
T Consensus 225 ~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wf 304 (564)
T KOG1174|consen 225 NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWF 304 (564)
T ss_pred hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhh
Confidence 334444444444455555555555555555555555555544444444544544555444444444444333211 1111
Q ss_pred HHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHH
Q 002100 750 LKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARV 827 (967)
Q Consensus 750 ~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~ 827 (967)
...-. ..+..+..+++.+.++.++ .+++..+++...|.++...++.++|+-.|+.|..+.|.+ .|.+|-.+
T Consensus 305 V~~~~----l~~~K~~~rAL~~~eK~I~---~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 305 VHAQL----LYDEKKFERALNFVEKCID---SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS 377 (564)
T ss_pred hhhhh----hhhhhhHHHHHHHHHHHhc---cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 11100 1111222233333332222 223344788999999999999999999999999977654 89999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc-c-----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHH
Q 002100 828 YHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE-Y-----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEA 901 (967)
Q Consensus 828 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-~-----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA 901 (967)
|...|.+.+|...-+.++...|+++..+-..|. . .-.++|...+++++.++|....+...+|.+....|+++++
T Consensus 378 YLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred HHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchH
Confidence 999999999999999999999999999988872 2 4568999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhhhc
Q 002100 902 IAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVNEQ 965 (967)
Q Consensus 902 i~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~~~ 965 (967)
++.+++++...|+...+..+|.+....+.+++|+..|..||.++|++...++-+.++++..+++
T Consensus 458 i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~~ 521 (564)
T KOG1174|consen 458 IKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDES 521 (564)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCCC
Confidence 9999999999999888999999999999999999999999999999999999999999987643
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=3.1e-20 Score=212.41 Aligned_cols=301 Identities=14% Similarity=0.011 Sum_probs=174.5
Q ss_pred chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhh
Q 002100 553 SYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNL 631 (967)
Q Consensus 553 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 631 (967)
....+.+|..+...|++++|+..|+++++.+| +..++..+|.++...|++++|+..+++++...+......
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~-------- 106 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQR-------- 106 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHH--------
Confidence 34456678888889999999999999999999 788899999999999999999999888876432211100
Q ss_pred HhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch
Q 002100 632 VETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE 711 (967)
Q Consensus 632 ~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~ 711 (967)
...+..+|.+|...|++++|+..|+++++.+|.+
T Consensus 107 ----------------------------------------------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~ 140 (389)
T PRK11788 107 ----------------------------------------------LLALQELGQDYLKAGLLDRAEELFLQLVDEGDFA 140 (389)
T ss_pred ----------------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch
Confidence 0122333444444444444444444444444444
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHH
Q 002100 712 HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNN 791 (967)
Q Consensus 712 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~ 791 (967)
..++..++.++...|++++|++.++++++..|..... .....+..
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~ 185 (389)
T PRK11788 141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV-----------------------------------EIAHFYCE 185 (389)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-----------------------------------HHHHHHHH
Confidence 4444444444444455555554444444444432200 00122334
Q ss_pred hHHHHHhcccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCH-HHHHHHHc----cCCh
Q 002100 792 LGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNA-SAYEKRSE----YCDR 864 (967)
Q Consensus 792 lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~----~~~~ 864 (967)
+|.++...|++++|+..|+++++.. ...++..+|.++...|++++|++.++++++..|.+. .++..++. .+++
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence 4444444455555555555444422 222444445555555555555555555554444331 22222221 1455
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH---cCChHHHHHHHHHH
Q 002100 865 DMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDS---MGDHLHTQRDCEAA 941 (967)
Q Consensus 865 ~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~---~g~~~~A~~~~~~a 941 (967)
++|+..++++++.+|+.. .+..++.++.+.|++++|+..++++++..|+...+..+...+.. .|+..+|+..+++.
T Consensus 266 ~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 266 AEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 555555555555566543 34778999999999999999999999999986644433333332 45788888777766
Q ss_pred Hh
Q 002100 942 LC 943 (967)
Q Consensus 942 l~ 943 (967)
++
T Consensus 345 ~~ 346 (389)
T PRK11788 345 VG 346 (389)
T ss_pred HH
Confidence 53
No 34
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2e-19 Score=194.74 Aligned_cols=441 Identities=15% Similarity=0.050 Sum_probs=303.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhCc-hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHH--hhcCChHH
Q 002100 461 HQLGVVMLEREEYKDAQNWFKAAVEAGH-IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQER--SLYCSGKE 537 (967)
Q Consensus 461 ~~lG~~~~~~g~y~~A~~~f~~al~~~~-~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~--~~y~~~~~ 537 (967)
+.+|.+++-.++|+.|......-.-.+. ....+..+.++.+..++..|..++...-... .+..+... +.+.+.+.
T Consensus 53 ~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~--~~f~yy~~~~~~~l~~n~ 130 (611)
T KOG1173|consen 53 YWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVET--NPFSYYEKDAANTLELNS 130 (611)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhh--cchhhcchhhhceeccCc
Confidence 4567777777777777666554422222 3334444566666666666666665331100 00011000 00000011
Q ss_pred HHHHHHHhHhhCCC--CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHh--------cCHH---
Q 002100 538 KMMDLNTATELDPT--LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIAL--------EDYD--- 603 (967)
Q Consensus 538 A~~~~~~al~l~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~--------g~~~--- 603 (967)
+. +..+. .....+.+|.+|....+.++|...|.+|+..++ ..++...+-....-. ...+
T Consensus 131 ~~-------~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~ 203 (611)
T KOG1173|consen 131 AG-------EDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAM 203 (611)
T ss_pred cc-------ccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHh
Confidence 11 11111 134567889999999999999999999998888 555544442222111 1100
Q ss_pred ---HHHHHHHHHHHhC-CCchH--Hhhhhh------hhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHH
Q 002100 604 ---GALRDVRALLTLD-PSYMM--FYGQLH------GDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHML 671 (967)
Q Consensus 604 ---~A~~~~~~al~l~-p~~~~--~~~~~~------~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l 671 (967)
+=.+..+...++. +.+.. ...+.. ...+..++.. +|| ..| ...+-...+......+
T Consensus 204 ~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~------~ad---~~y---~~c~f~~c~kit~~ll 271 (611)
T KOG1173|consen 204 LTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAE------KAD---RLY---YGCRFKECLKITEELL 271 (611)
T ss_pred hhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHH------HHH---HHH---HcChHHHHHHHhHHHH
Confidence 1111112222211 11000 000000 0000011110 111 000 0111122377788899
Q ss_pred hcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Q 002100 672 ANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLK 751 (967)
Q Consensus 672 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 751 (967)
+.+|-++..+-..-.++..+|+..+=...=-+.++..|+.+-.|+..|..|+..|++.+|.++|.++..++|.+.
T Consensus 272 e~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg----- 346 (611)
T KOG1173|consen 272 EKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG----- 346 (611)
T ss_pred hhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc-----
Confidence 999977665544333888889888877777888999999999999999999999999999999999999999777
Q ss_pred HHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHH
Q 002100 752 AYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYH 829 (967)
Q Consensus 752 ~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~ 829 (967)
.+|...|..+...++-++|+.+|..|-+ ++..-..+.+|.-|.
T Consensus 347 -----------------------------------paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 347 -----------------------------------PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYM 391 (611)
T ss_pred -----------------------------------HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 8999999999999999999999999998 444447778999999
Q ss_pred HhCCHHHHHHHHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhcc----CCC---CchHHHHHHHHHHhCCCH
Q 002100 830 LKNQRKAAYDEMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQL----DPM---RTYPYRYRAAVLMDDHKE 898 (967)
Q Consensus 830 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l----~p~---~~~~~~~la~~~~~~g~~ 898 (967)
..++.+-|.+.|.+++.+.|+++.++...|. ++.+.+|...|+.+++. .+. -...+.++|.++.+.+++
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred HhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 9999999999999999999999999999994 38999999999999843 222 234588999999999999
Q ss_pred HHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 899 AEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 899 ~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
++||.+|++++.+.|.+ .++-.+|.+|..+|+++.|+..|.++|.++|++.-+.++++.+-+..
T Consensus 472 ~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~~ 536 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIEDS 536 (611)
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Confidence 99999999999999995 58889999999999999999999999999999999999888876653
No 35
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=2.8e-19 Score=215.13 Aligned_cols=397 Identities=14% Similarity=-0.019 Sum_probs=310.3
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
+++.|+..|+++++.+|+++.+...++.++...|++++|+..+++++.-.| ....+..+|.+|..+|++++|++.|+++
T Consensus 49 d~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ka 128 (822)
T PRK14574 49 DTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSS 128 (822)
T ss_pred CHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 338999999999999999975555888889999999999999999993333 4555566688999999999999999999
Q ss_pred HHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhc
Q 002100 613 LTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLN 692 (967)
Q Consensus 613 l~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g 692 (967)
++.+|+++.++ ..++.++...++.++| +..+.+++..+|.+... ..++.++...+
T Consensus 129 L~~dP~n~~~l------~gLa~~y~~~~q~~eA------------------l~~l~~l~~~dp~~~~~-l~layL~~~~~ 183 (822)
T PRK14574 129 LKKDPTNPDLI------SGMIMTQADAGRGGVV------------------LKQATELAERDPTVQNY-MTLSYLNRATD 183 (822)
T ss_pred HhhCCCCHHHH------HHHHHHHhhcCCHHHH------------------HHHHHHhcccCcchHHH-HHHHHHHHhcc
Confidence 99999998888 4557888888888888 99999999999985554 55666666678
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH------Hhh--hcCCCCC-
Q 002100 693 SQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAY------ALA--DSSLNPE- 763 (967)
Q Consensus 693 ~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~------~la--~~~~~~~- 763 (967)
+..+|+..++++++.+|++.+.+..+..++...|-...|++..++--..........+... ..+ ......+
T Consensus 184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 8877999999999999999999999999999999999999887764332221111111111 111 1111111
Q ss_pred --chHHHHHHHHHHhcCCCCCC----chHHHHHHhHHHHHhcccHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhCCH
Q 002100 764 --SSAYVIQLLEEALRCPSDGL----RKGQALNNLGSVYVDCEKLDLAADCYMNALNIK---HTRAHQGLARVYHLKNQR 834 (967)
Q Consensus 764 --~~~~a~~~le~~~~~~~~~~----~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~---~~~a~~~la~~~~~~g~~ 834 (967)
..++++..++.++......| ....+..-.-.++...+++.++++.|+.....+ |.++....|..|..+++.
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 23556666677665433333 233344455566788999999999999988643 677999999999999999
Q ss_pred HHHHHHHHHHHHHccC------CH----HHHHHHHccCChHHHHHHHHHhhccCC---------------CCchHHHHHH
Q 002100 835 KAAYDEMTKLIEKARN------NA----SAYEKRSEYCDRDMAKSDLSMATQLDP---------------MRTYPYRYRA 889 (967)
Q Consensus 835 ~~A~~~~~~al~~~p~------~~----~~~~~~~~~~~~~~A~~~l~~al~l~p---------------~~~~~~~~la 889 (967)
++|...|++++...|. .. ..++..-+.+++++|...+++..+..| +...+...++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 9999999999886632 11 123334455999999999999887544 2335667789
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 002100 890 AVLMDDHKEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELY 955 (967)
Q Consensus 890 ~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~ 955 (967)
.++...|++.+|++.+++.+...|.+ .....+|.++...|++.+|...++.++.++|++..+.-..
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 99999999999999999999999995 5888899999999999999999999999999987775433
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.88 E-value=1.5e-17 Score=181.69 Aligned_cols=477 Identities=13% Similarity=0.051 Sum_probs=260.0
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCc--hhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002100 439 TVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH--IYSLVGVARTKFKRGHKYSAYKLMNSLI 516 (967)
Q Consensus 439 ~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i 516 (967)
+..+|.+..+|.+..-+-..|+..| .-|+.|...+++|.+.=| ...+..-+++...+|+.+...+++.+.+
T Consensus 395 arilL~rAveccp~s~dLwlAlarL-------etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl 467 (913)
T KOG0495|consen 395 ARILLERAVECCPQSMDLWLALARL-------ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGL 467 (913)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHH-------HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6778888888877665544444333 679999999999999855 4455566778888999988888888877
Q ss_pred hccCcchhHHHHHhhc-----CChHHH----HHHHHHhHhh---CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC
Q 002100 517 SDYTPVGWMYQERSLY-----CSGKEK----MMDLNTATEL---DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV 584 (967)
Q Consensus 517 ~~~~~~g~~~~~~~~y-----~~~~~A----~~~~~~al~l---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 584 (967)
......|.....-.-. ++...+ -+.....|.+ +.+.-..|..-+..+...+-++-|+..|..+++..|
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp 547 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP 547 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc
Confidence 7444333221111100 000000 0111111211 223334555556666666666666666666666666
Q ss_pred -ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccch
Q 002100 585 -SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGS 663 (967)
Q Consensus 585 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~a 663 (967)
....|...+.+--.-|..++-...+++++...|.....+ .+.+..+...++...|
T Consensus 548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lw------lM~ake~w~agdv~~a------------------ 603 (913)
T KOG0495|consen 548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILW------LMYAKEKWKAGDVPAA------------------ 603 (913)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHH------HHHHHHHHhcCCcHHH------------------
Confidence 444444444444455555655666666666666555555 3334444444444444
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
...+.++++.+|++..+|+..-.+.....+++.|...|.++....|. ...|+.-+.....+++.++|++.++++++..|
T Consensus 604 r~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp 682 (913)
T KOG0495|consen 604 RVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFP 682 (913)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 55566666666666666666666666666666666666666665554 34555555555666666666666666666666
Q ss_pred chHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HH
Q 002100 744 SFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AH 821 (967)
Q Consensus 744 ~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~ 821 (967)
++..+|+..- +...+.+..+.+...+..-.+. -|.....|..++.+-...|+.-.|...++++.-.+|.+ .|
T Consensus 683 ~f~Kl~lmlG---Qi~e~~~~ie~aR~aY~~G~k~---cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lw 756 (913)
T KOG0495|consen 683 DFHKLWLMLG---QIEEQMENIEMAREAYLQGTKK---CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLW 756 (913)
T ss_pred chHHHHHHHh---HHHHHHHHHHHHHHHHHhcccc---CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhH
Confidence 5551110000 0000000000000000000000 00111345555555555555555555555555544433 33
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCC
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHK 897 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~ 897 (967)
...-++-.+.|+.+.|...+.++++..|+++..|...-.+ ++...+ .-|++....++..+...|..+....+
T Consensus 757 le~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks----~DALkkce~dphVllaia~lfw~e~k 832 (913)
T KOG0495|consen 757 LESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKS----IDALKKCEHDPHVLLAIAKLFWSEKK 832 (913)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHH----HHHHHhccCCchhHHHHHHHHHHHHH
Confidence 3333344445555555555555555555555554443322 222222 22333334556666777777777778
Q ss_pred HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 002100 898 EAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDK 957 (967)
Q Consensus 898 ~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r 957 (967)
+++|.+.|+++++.+|++ +++...-.++...|.-++-.+.+.+...-.|.|.+.+...++
T Consensus 833 ~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 833 IEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 888888888888888774 466666667777777777777777777777877776655443
No 37
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=5.6e-20 Score=210.33 Aligned_cols=272 Identities=18% Similarity=0.054 Sum_probs=239.3
Q ss_pred hhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 002100 630 NLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYST 709 (967)
Q Consensus 630 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p 709 (967)
+..+..+...+++++| +..+.++++.+|.+..+++.+|.++...|++++|+..+++++...+
T Consensus 39 y~~g~~~~~~~~~~~A------------------~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 100 (389)
T PRK11788 39 YFKGLNFLLNEQPDKA------------------IDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD 100 (389)
T ss_pred HHHHHHHHhcCChHHH------------------HHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC
Confidence 4556777777888888 9999999999999999999999999999999999999999988543
Q ss_pred ch----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCch
Q 002100 710 SE----HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRK 785 (967)
Q Consensus 710 ~~----~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~ 785 (967)
.. ...+..+|.++...|++++|+..|+++++.+|...
T Consensus 101 ~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~--------------------------------------- 141 (389)
T PRK11788 101 LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAE--------------------------------------- 141 (389)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchH---------------------------------------
Confidence 22 35678899999999999999999999998777444
Q ss_pred HHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHH
Q 002100 786 GQALNNLGSVYVDCEKLDLAADCYMNALNIKHT-------RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKR 858 (967)
Q Consensus 786 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~-------~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 858 (967)
.++..++.++...|++++|++.|+++++.++. ..+..+|.++..+|++++|+..|+++++..|++..++..+
T Consensus 142 -~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 220 (389)
T PRK11788 142 -GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILL 220 (389)
T ss_pred -HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHH
Confidence 68889999999999999999999999884432 1566799999999999999999999999999999998888
Q ss_pred Hcc----CChHHHHHHHHHhhccCCCC-chHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHH
Q 002100 859 SEY----CDRDMAKSDLSMATQLDPMR-TYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLH 933 (967)
Q Consensus 859 ~~~----~~~~~A~~~l~~al~l~p~~-~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~ 933 (967)
+.. |++++|+..|+++++.+|.+ ...+..++.+|...|++++|+..++++++..|+...+..++.++...|++++
T Consensus 221 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~ 300 (389)
T PRK11788 221 GDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEA 300 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHH
Confidence 843 99999999999999998876 4567889999999999999999999999999997777889999999999999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHH
Q 002100 934 TQRDCEAALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 934 A~~~~~~al~~~P~~~~~l~l~~r~~ 959 (967)
|+..++++++.+|++.....++....
T Consensus 301 A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 301 AQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 99999999999999988776666543
No 38
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.86 E-value=1.3e-18 Score=176.85 Aligned_cols=316 Identities=16% Similarity=0.159 Sum_probs=252.4
Q ss_pred hchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhh
Q 002100 452 ESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSL 531 (967)
Q Consensus 452 ~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~ 531 (967)
.++....-++.+|..++.+|++..|+..|..|++.+|.......-+ +.+|...++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrR-------------------------aT~yLAmGk 87 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRR-------------------------ATVYLAMGK 87 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHH-------------------------HHHHhhhcC
Confidence 3556677889999999999999999999999999999654443222 455555553
Q ss_pred cCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C---hhHHHHHH------------HH
Q 002100 532 YCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S---PDCLELRA------------WI 595 (967)
Q Consensus 532 y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~---~~~~~~la------------~~ 595 (967)
- ..|+.++.+++++.|+...+...+|.+++++|.+++|...|++++..+| + .+++..++ ..
T Consensus 88 s---k~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s 164 (504)
T KOG0624|consen 88 S---KAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKS 164 (504)
T ss_pred C---ccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHH
Confidence 3 8899999999999999999999999999999999999999999999998 2 33443333 33
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCC
Q 002100 596 SIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDP 675 (967)
Q Consensus 596 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p 675 (967)
+...||+..|+.....+|++.|=+...+ ..++.+|...+....| |..+..+-++..
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~~Wda~l~------~~Rakc~i~~~e~k~A------------------I~Dlk~askLs~ 220 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQPWDASLR------QARAKCYIAEGEPKKA------------------IHDLKQASKLSQ 220 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcCcchhHHH------HHHHHHHHhcCcHHHH------------------HHHHHHHHhccc
Confidence 4556899999999999999999988888 7778888888777777 899999999999
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHH------------HHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 676 GKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVY------------EGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 676 ~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~------------lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
++...+|..+.+++..|+.+.++...+..++++|++-..+-. -+......++|.+++...++.++.+|
T Consensus 221 DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 221 DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999986543211 12233455667777777777776666
Q ss_pred chHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HH
Q 002100 744 SFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AH 821 (967)
Q Consensus 744 ~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~ 821 (967)
.-. +.....+..+..++...+++.+|+....+++..++.+ ++
T Consensus 301 ~~~------------------------------------~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l 344 (504)
T KOG0624|consen 301 EET------------------------------------MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVL 344 (504)
T ss_pred ccc------------------------------------ceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHH
Confidence 321 1222345566788888999999999999999866654 88
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHH
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNNASAY 855 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 855 (967)
...|.+|.....|+.|+..|+++.+.++++..+-
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 8899999999999999999999999988765443
No 39
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=9.3e-19 Score=189.28 Aligned_cols=380 Identities=16% Similarity=0.140 Sum_probs=273.7
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALED 601 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~ 601 (967)
|+..+..+.| +.|+..|.+||.++|.|...|-++..+|..+|+|++|++.-.+.++++| =+..|..+|..+.-+|+
T Consensus 9 gnaa~s~~d~---~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDF---ETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccH---HHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence 4455555544 9999999999999999999999999999999999999999999999999 58899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhh--ccccccchHHHHHHHHhcCCCChH
Q 002100 602 YDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRW--SSVDDIGSLAVVHHMLANDPGKSL 679 (967)
Q Consensus 602 ~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~--~~~d~~~al~~~~~~l~~~p~~~~ 679 (967)
|++|+..|.+.|+.+|++......+...+ ...+...+.+....-|+.+-..- ...-...+.....+.+..+|.+..
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~--~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAY--LEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhh--hHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 99999999999999999998884432111 11111122222232222221000 000001123333344444444333
Q ss_pred HHHHHHHHHHHh----cCHHHHHHHHHHHH---hcCC---------------------chhHHHHHHHHHHHHcCChHHH
Q 002100 680 LRFRQSLLLLRL----NSQKAAMRSLRLAR---NYST---------------------SEHEKLVYEGWILYDTGHREEA 731 (967)
Q Consensus 680 ~~~~~g~~~~~~----g~~~~A~~~l~~al---~~~p---------------------~~~~a~~~lg~~~~~~g~~~eA 731 (967)
.+..--.+.... +.-.-+...-.... ...| .-+.....+|...+...+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 222110000000 00000000000000 0011 0123456789999999999999
Q ss_pred HHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHH
Q 002100 732 LAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMN 811 (967)
Q Consensus 732 ~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 811 (967)
++.|..+++++ ... ..+++.+.+|+..|++.+.+....+
T Consensus 244 ~q~y~~a~el~-~~i----------------------------------------t~~~n~aA~~~e~~~~~~c~~~c~~ 282 (539)
T KOG0548|consen 244 IQHYAKALELA-TDI----------------------------------------TYLNNIAAVYLERGKYAECIELCEK 282 (539)
T ss_pred HHHHHHHHhHh-hhh----------------------------------------HHHHHHHHHHHhccHHHHhhcchHH
Confidence 99999999888 443 4678889999999999999999999
Q ss_pred HhccCcHH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCc
Q 002100 812 ALNIKHTR---------AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRT 882 (967)
Q Consensus 812 Al~~~~~~---------a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~ 882 (967)
+++.+... +...+|..|.+.++++.|+.+|.+++....+ ++....+ ...++++...+...-++|.-.
T Consensus 283 a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-~~~ls~l---k~~Ek~~k~~e~~a~~~pe~A 358 (539)
T KOG0548|consen 283 AVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-PDLLSKL---KEAEKALKEAERKAYINPEKA 358 (539)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-HHHHHHH---HHHHHHHHHHHHHHhhChhHH
Confidence 98854331 4445777999999999999999999887765 3332222 456788888888888899988
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHH
Q 002100 883 YPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTL 952 (967)
Q Consensus 883 ~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l 952 (967)
..-...|..+++.|+|.+|+..|.++|..+|++. .|-+||.+|.++|++..|+++++++++++|+.....
T Consensus 359 ~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy 429 (539)
T KOG0548|consen 359 EEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAY 429 (539)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHH
Confidence 8888899999999999999999999999999965 899999999999999999999999999999976653
No 40
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.85 E-value=3.8e-16 Score=170.93 Aligned_cols=446 Identities=16% Similarity=0.067 Sum_probs=244.2
Q ss_pred HHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhH---HHHHhhcCChHHHHHHHHHhHhhCCCCch
Q 002100 478 NWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWM---YQERSLYCSGKEKMMDLNTATELDPTLSY 554 (967)
Q Consensus 478 ~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~---~~~~~~y~~~~~A~~~~~~al~l~P~~~~ 554 (967)
..+++||+.-|.....+-+.+ ...+.+.|..++.++++..+..-.+ +..+..| +.|...++++-+.-|++..
T Consensus 367 RVlRKALe~iP~sv~LWKaAV--elE~~~darilL~rAveccp~s~dLwlAlarLetY---enAkkvLNkaRe~iptd~~ 441 (913)
T KOG0495|consen 367 RVLRKALEHIPRSVRLWKAAV--ELEEPEDARILLERAVECCPQSMDLWLALARLETY---ENAKKVLNKAREIIPTDRE 441 (913)
T ss_pred HHHHHHHHhCCchHHHHHHHH--hccChHHHHHHHHHHHHhccchHHHHHHHHHHHHH---HHHHHHHHHHHhhCCCChh
Confidence 344555555444443332222 2223333555555555544433222 2223334 6666666666666666666
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHhcc---CC---Chh-------------------------------------HHHH
Q 002100 555 PYKYRAILLVEENKLAAAITEINRIIGF---KV---SPD-------------------------------------CLEL 591 (967)
Q Consensus 555 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~p---~~~-------------------------------------~~~~ 591 (967)
.|..-+.+-...|+.+.-.+.+.+.+.. +. +-+ .+..
T Consensus 442 IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~ 521 (913)
T KOG0495|consen 442 IWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLD 521 (913)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhh
Confidence 6666666666666655555555544321 11 223 3444
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHH
Q 002100 592 RAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHML 671 (967)
Q Consensus 592 la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l 671 (967)
-+..+.+.+-++-|...|..+|+.+|.....|.+. ..+-...+..+. -...+++++
T Consensus 522 da~~~~k~~~~~carAVya~alqvfp~k~slWlra------~~~ek~hgt~Es------------------l~Allqkav 577 (913)
T KOG0495|consen 522 DAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRA------AMFEKSHGTRES------------------LEALLQKAV 577 (913)
T ss_pred hHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHH------HHHHHhcCcHHH------------------HHHHHHHHH
Confidence 44555555555555555555555555555555221 111111111111 144555666
Q ss_pred hcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Q 002100 672 ANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLK 751 (967)
Q Consensus 672 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 751 (967)
..-|....+|...+..+...|+..+|...+..+++.+|++-+.|+.--.+.....+++.|...+.++....|.-..++ +
T Consensus 578 ~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~m-K 656 (913)
T KOG0495|consen 578 EQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWM-K 656 (913)
T ss_pred HhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhH-H
Confidence 666666666666666666666666666666666666666666666555666666666666666666665555333111 1
Q ss_pred HHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHH
Q 002100 752 AYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYH 829 (967)
Q Consensus 752 ~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~ 829 (967)
...+- .-.+..+.++.++++.++..++-+ ..|..+|.++.++++.+.|.+.|..-++ ++....|..|+++-.
T Consensus 657 s~~~e---r~ld~~eeA~rllEe~lk~fp~f~---Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 657 SANLE---RYLDNVEEALRLLEEALKSFPDFH---KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred HhHHH---HHhhhHHHHHHHHHHHHHhCCchH---HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 11100 011334555555555555444333 4555566666666666666666666555 333345666666666
Q ss_pred HhCCHHHHHHHHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHH
Q 002100 830 LKNQRKAAYDEMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAEL 905 (967)
Q Consensus 830 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~ 905 (967)
+.|+...|...++++.-.+|+++..|...-. .|+.++|.....+|++-.|.+...|..--...-+-++-..++..+
T Consensus 731 k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DAL 810 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDAL 810 (913)
T ss_pred HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHH
Confidence 6666666666666666666666555554431 256666666666666666665555554444444444444444443
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 906 SRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 906 ~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
.+. .-++.++...|.+++...++++|...|++++.++|++.+++..+=+.+-+.
T Consensus 811 kkc---e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~h 864 (913)
T KOG0495|consen 811 KKC---EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRH 864 (913)
T ss_pred Hhc---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHh
Confidence 333 223456777899999999999999999999999999999988776655443
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.84 E-value=3.7e-18 Score=194.30 Aligned_cols=361 Identities=15% Similarity=0.055 Sum_probs=210.0
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhh
Q 002100 557 KYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETL 635 (967)
Q Consensus 557 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l 635 (967)
+..|..++..|++++|++.+..+|+.+| ++.+|+.+|.+|.++|+.++|...+-.|-.++|++...| ..++..
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W------~~ladl 216 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELW------KRLADL 216 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHH------HHHHHH
Confidence 3444444555555555555555555555 555555555555555555555555555555555555555 334444
Q ss_pred HHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch----
Q 002100 636 QPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE---- 711 (967)
Q Consensus 636 ~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~---- 711 (967)
...++++++| .-.|.++++.+|.+....+.++.+|.+.|+...|+..|.+++...|..
T Consensus 217 s~~~~~i~qA------------------~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 217 SEQLGNINQA------------------RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred HHhcccHHHH------------------HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 4455555555 445555555555555555555555555555555555555555555511
Q ss_pred hHHH-HHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHh--------------
Q 002100 712 HEKL-VYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEAL-------------- 776 (967)
Q Consensus 712 ~~a~-~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~-------------- 776 (967)
.... ...+..+...++.+.|++.++.++....+-. -......++...+...+++.+...+-...
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~-~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEA-SLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccc-cccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence 1111 1123334444444555555555444111000 00000011111111111112111111111
Q ss_pred -----------cCCCCCCchHHH-HHHhHHHHHhcccHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 002100 777 -----------RCPSDGLRKGQA-LNNLGSVYVDCEKLDLAADCYMNALN---IKHTRAHQGLARVYHLKNQRKAAYDEM 841 (967)
Q Consensus 777 -----------~~~~~~~~~~~a-~~~lg~~~~~~g~~~~A~~~~~~Al~---~~~~~a~~~la~~~~~~g~~~~A~~~~ 841 (967)
....+......+ ...++.+.....+..+++..+..--. .+..+.+..++.++...|++.+|+.+|
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l 437 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLL 437 (895)
T ss_pred hhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 111111222233 55667777777777777777654433 334458999999999999999999999
Q ss_pred HHHHHHcc-CCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--
Q 002100 842 TKLIEKAR-NNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-- 914 (967)
Q Consensus 842 ~~al~~~p-~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-- 914 (967)
..++...+ +++.+|..+|. .+.+++|+..|++++.++|++.++...++.++.++|+.++|.+.+++.+.-++.
T Consensus 438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~ 517 (895)
T KOG2076|consen 438 SPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNA 517 (895)
T ss_pred HHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccch
Confidence 99998776 46778888884 399999999999999999999999999999999999999999999987633311
Q ss_pred --------hHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 915 --------LQLLHLRAAFHDSMGDHLHTQRDCEAAL 942 (967)
Q Consensus 915 --------~~~~~~~a~~~~~~g~~~~A~~~~~~al 942 (967)
-.+...+..++.+.|+.++=+..-...+
T Consensus 518 e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 518 EACAWEPERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred hhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1267789999999999998554444333
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.3e-18 Score=181.94 Aligned_cols=411 Identities=15% Similarity=0.074 Sum_probs=304.4
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHhCc-------hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHh
Q 002100 458 LAFHQLGVVMLEREEYKDAQNWFKAAVEAGH-------IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERS 530 (967)
Q Consensus 458 ~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~-------~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~ 530 (967)
..-.++|.++++..+|.+|+++|+-|+..-| ......++-.+.+.|++..|+..|...++..|+.-..+...-
T Consensus 238 ~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i 317 (840)
T KOG2003|consen 238 ILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLII 317 (840)
T ss_pred eeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhh
Confidence 3445689999999999999999999998755 122233344556788999999999999887776554443322
Q ss_pred -hc--CChHHHHHHHHHhHhhC--CC---------Cc-hhHHHHHHHH-----HhcCcHHHHHHHHHHHhcc-CC----C
Q 002100 531 -LY--CSGKEKMMDLNTATELD--PT---------LS-YPYKYRAILL-----VEENKLAAAITEINRIIGF-KV----S 585 (967)
Q Consensus 531 -~y--~~~~~A~~~~~~al~l~--P~---------~~-~~~~~la~~~-----~~~g~~~~A~~~~~~al~~-~p----~ 585 (967)
.| ++.++-.+.|.+.|.+- |+ ++ ..+.+-+.-- ++..+-..|.+.+..+.++ .| +
T Consensus 318 ~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~ 397 (840)
T KOG2003|consen 318 CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD 397 (840)
T ss_pred hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc
Confidence 11 26677788888887651 11 11 1222222211 1222222233333222221 12 1
Q ss_pred ---------------------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhh
Q 002100 586 ---------------------PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQ 644 (967)
Q Consensus 586 ---------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~ 644 (967)
.+.-...+--+++.|+++.|++.++-.-+.+.....+. ..++..++...|--+-
T Consensus 398 fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saa-----a~nl~~l~flqggk~~ 472 (840)
T KOG2003|consen 398 FAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAA-----ANNLCALRFLQGGKDF 472 (840)
T ss_pred hhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHH-----hhhhHHHHHHhcccch
Confidence 12234456678889999999987765544443333222 1344444444332222
Q ss_pred HhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 002100 645 ADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYD 724 (967)
Q Consensus 645 A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~ 724 (967)
++ |..+...++..+..++.+..+.|.+.+..|++++|...|+.++..+.+..++++++|..+..
T Consensus 473 ~~----------------aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~ 536 (840)
T KOG2003|consen 473 AD----------------AQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEA 536 (840)
T ss_pred hH----------------HHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHH
Confidence 21 36677788999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHH
Q 002100 725 TGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDL 804 (967)
Q Consensus 725 ~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~ 804 (967)
+|+.++|+.+|-+.-.+-.++. +.++.++.+|..+.+..+
T Consensus 537 ~~~ldeald~f~klh~il~nn~----------------------------------------evl~qianiye~led~aq 576 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHAILLNNA----------------------------------------EVLVQIANIYELLEDPAQ 576 (840)
T ss_pred hcCHHHHHHHHHHHHHHHHhhH----------------------------------------HHHHHHHHHHHHhhCHHH
Confidence 9999999999988664444333 789999999999999999
Q ss_pred HHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccC
Q 002100 805 AADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLD 878 (967)
Q Consensus 805 A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~ 878 (967)
|+++|.++.. ++.+.++..||.+|-+.|+..+|..++-......|.+.+....++.| .-.++|+.+|++|.-+.
T Consensus 577 aie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 577 AIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 9999999988 55666899999999999999999999999999999999988888854 55689999999999999
Q ss_pred CCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcC
Q 002100 879 PMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMG 929 (967)
Q Consensus 879 p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g 929 (967)
|+...-....|.++.+.|+|++|...|...-...|+ .+.+..+-++.-.+|
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 998887788899999999999999999999988888 456666666665555
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.9e-18 Score=187.18 Aligned_cols=365 Identities=16% Similarity=0.075 Sum_probs=232.5
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCcchhHHHHHhhcCChH
Q 002100 458 LAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISD-YTPVGWMYQERSLYCSGK 536 (967)
Q Consensus 458 ~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~-~~~~g~~~~~~~~y~~~~ 536 (967)
...+..|.+|....+.++|..+|.+|+..+..........+-...=-..+-..++..+--. ... -..-.....| ...
T Consensus 142 sic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~-ed~e~l~~ly-el~ 219 (611)
T KOG1173|consen 142 SICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTK-EDVERLEILY-ELK 219 (611)
T ss_pred ceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhh-hHHHHHHHHH-Hhh
Confidence 3466789999999999999999999999876332222222111111111111111110000 000 0000000000 000
Q ss_pred HHHHHHHHhHhhC--------CCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHH
Q 002100 537 EKMMDLNTATELD--------PTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALR 607 (967)
Q Consensus 537 ~A~~~~~~al~l~--------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~ 607 (967)
.....=+..+..+ .++......++..++...+|.+..+..+..++.+| ++.++-..-.++..+|+..+=..
T Consensus 220 ~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~ 299 (611)
T KOG1173|consen 220 LCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFL 299 (611)
T ss_pred hhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHH
Confidence 0000000000111 23556677777788888888888888888888888 66665555457777777777666
Q ss_pred HHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHH
Q 002100 608 DVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLL 687 (967)
Q Consensus 608 ~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~ 687 (967)
.-.+..+..|+.+..| +..|.-|..++++++| -..|.++..++|..+.+|...|..
T Consensus 300 lsh~LV~~yP~~a~sW------~aVg~YYl~i~k~seA------------------Rry~SKat~lD~~fgpaWl~fghs 355 (611)
T KOG1173|consen 300 LSHKLVDLYPSKALSW------FAVGCYYLMIGKYSEA------------------RRYFSKATTLDPTFGPAWLAFGHS 355 (611)
T ss_pred HHHHHHHhCCCCCcch------hhHHHHHHHhcCcHHH------------------HHHHHHHhhcCccccHHHHHHhHH
Confidence 6677777788877777 6667777777888777 677788888888888888888888
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHH
Q 002100 688 LLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAY 767 (967)
Q Consensus 688 ~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~ 767 (967)
+...++.++|+.+|..|-++-|.......++|.-|..+++++-|.+.|.+|+.+.|+++
T Consensus 356 fa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dp--------------------- 414 (611)
T KOG1173|consen 356 FAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDP--------------------- 414 (611)
T ss_pred hhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcc---------------------
Confidence 88888888888888888888888777777888888888888888888888888887665
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHhCCHHHHH
Q 002100 768 VIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI----KH-----TRAHQGLARVYHLKNQRKAAY 838 (967)
Q Consensus 768 a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~----~~-----~~a~~~la~~~~~~g~~~~A~ 838 (967)
-.++.+|.+.+..+.|.+|+.+|++++.. .+ ...+.+||.++.+++.+++|+
T Consensus 415 -------------------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 415 -------------------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred -------------------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 56777788888888888888888877741 11 115777777777777777777
Q ss_pred HHHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHH
Q 002100 839 DEMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYR 888 (967)
Q Consensus 839 ~~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~l 888 (967)
..|++++.+.|.++..+...|. .|+++.|++.|.+++.++|++..+-..+
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 7777777766666555555552 2555555555555555555554443333
No 44
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.82 E-value=2e-16 Score=177.42 Aligned_cols=431 Identities=15% Similarity=0.087 Sum_probs=242.2
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHh--CchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcC
Q 002100 456 KQLAFHQLGVVMLEREEYKDAQNWFKAAVEA--GHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYC 533 (967)
Q Consensus 456 ~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~ 533 (967)
.+..|-.+.......|+|+.+.+.|++++.. +....+..++..+..-|....|..+++.....-+
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~------------- 388 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE------------- 388 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc-------------
Confidence 4556667777788889999999999999887 3455566666666666655555555555444330
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHH-HHHhcCcHHHHHHHHHHHhccCC------ChhHHHHHHHHHHHh-------
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAI-LLVEENKLAAAITEINRIIGFKV------SPDCLELRAWISIAL------- 599 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~la~~~~~~------- 599 (967)
.|.++..+..-+. +..+.+.+++++.+..+++.... .+.++..+|.+|..+
T Consensus 389 ---------------~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~ 453 (799)
T KOG4162|consen 389 ---------------QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLK 453 (799)
T ss_pred ---------------CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCCh
Confidence 0333333333322 22333445555555555544211 233444444444322
Q ss_pred ----cCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCC
Q 002100 600 ----EDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDP 675 (967)
Q Consensus 600 ----g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p 675 (967)
-...++++.++++++.+|+|+.+. +.++.-|...++.+.| +....++++.++
T Consensus 454 seR~~~h~kslqale~av~~d~~dp~~i------f~lalq~A~~R~l~sA------------------l~~~~eaL~l~~ 509 (799)
T KOG4162|consen 454 SERDALHKKSLQALEEAVQFDPTDPLVI------FYLALQYAEQRQLTSA------------------LDYAREALALNR 509 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchHH------HHHHHHHHHHHhHHHH------------------HHHHHHHHHhcC
Confidence 112344555555555555555444 4444444444444444 444555555532
Q ss_pred -CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 676 -GKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 676 -~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
..+..|..++.++...+++.+|+.....+++..|+|.........+-...++.++|+..+...+.+.. ..|.
T Consensus 510 ~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we-------~~~~ 582 (799)
T KOG4162|consen 510 GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWE-------AEYG 582 (799)
T ss_pred CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHH-------hhhh
Confidence 23344455555555555555555555555555555544444444444445555555555544442221 0000
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHh-HHHH--HhcccHHHHHHHHHHHhccCc-----HHHHHHHHH
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNL-GSVY--VDCEKLDLAADCYMNALNIKH-----TRAHQGLAR 826 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~l-g~~~--~~~g~~~~A~~~~~~Al~~~~-----~~a~~~la~ 826 (967)
.-... +.+.. ..+-..+.-...+..........+ +.+. ...-..+..+..+...-.+++ ...|...|.
T Consensus 583 ~q~~~-~~g~~---~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~ 658 (799)
T KOG4162|consen 583 VQQTL-DEGKL---LRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAAD 658 (799)
T ss_pred Hhhhh-hhhhh---hhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHH
Confidence 00000 00000 000000000000000000001111 0100 000000111000000000111 126777888
Q ss_pred HHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHH
Q 002100 827 VYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAI 902 (967)
Q Consensus 827 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi 902 (967)
++.+.++.++|...+.++-...|..++.|+.+|.. ++.++|...|..|+.+||+++.....+|.++.+.|+..-|.
T Consensus 659 ~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~ 738 (799)
T KOG4162|consen 659 LFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAE 738 (799)
T ss_pred HHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHH
Confidence 88888888999888999989999999999998843 88899999999999999999999999999999999888888
Q ss_pred H--HHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch
Q 002100 903 A--ELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHT 949 (967)
Q Consensus 903 ~--~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~ 949 (967)
+ .+..+++++|. +++|+.+|.++.++|+.++|...|..|+++.+.+|
T Consensus 739 ~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 739 KRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 8 89999999999 56999999999999999999999999999988776
No 45
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.81 E-value=1.4e-16 Score=181.86 Aligned_cols=465 Identities=14% Similarity=0.058 Sum_probs=297.7
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCc--hhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002100 439 TVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH--IYSLVGVARTKFKRGHKYSAYKLMNSLI 516 (967)
Q Consensus 439 ~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i 516 (967)
....+..+.+....++.-+.++-.||.+|..--|...|..+|++|.++++ ..+..+.+..|....+++.|....-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 55667778888888999999999999999999999999999999999987 4566778889999999998888754443
Q ss_pred h---------ccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-Ch
Q 002100 517 S---------DYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SP 586 (967)
Q Consensus 517 ~---------~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~ 586 (967)
+ .++..|..|.+.. +...|+.+|+.|+..+|++...|..+|.+|.+.|+|..|++.|+++..++| +.
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~---n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAH---NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred hhchHHHHHhhhhhccccccCcc---chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 3 2233444444444 559999999999999999999999999999999999999999999999999 88
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhh-hHhhhHHHhhchhhHhhHHHHHhhhccccccchHH
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDN-LVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLA 665 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~-~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~ 665 (967)
...+..|.+....|+|.+|+..+...+............+...+ ..+..+...+=+.+|..+.+ .+++
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~e-----------ksie 699 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFE-----------KSIE 699 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHH-----------HHHH
Confidence 89999999999999999999999998876554433321111000 01111111111111110000 0011
Q ss_pred HHHHHHh----------------------cCCCC-----------------------------------------hHHHH
Q 002100 666 VVHHMLA----------------------NDPGK-----------------------------------------SLLRF 682 (967)
Q Consensus 666 ~~~~~l~----------------------~~p~~-----------------------------------------~~~~~ 682 (967)
.+.-++. ..|+. +..|+
T Consensus 700 ~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~Wy 779 (1238)
T KOG1127|consen 700 SFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWY 779 (1238)
T ss_pred HHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHH
Confidence 1110000 01111 22333
Q ss_pred HHHHHHHH--------hcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 683 RQSLLLLR--------LNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 683 ~~g~~~~~--------~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
++|.-|++ +.+-..|+.++++++++..++...|..+|.+ ...|++.-|...|-+++...|
T Consensus 780 NLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep----------- 847 (1238)
T KOG1127|consen 780 NLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP----------- 847 (1238)
T ss_pred HHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-----------
Confidence 44433333 1122244444444444444444444444444 233444444444444444444
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhC
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKN 832 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g 832 (967)
...-.|.|+|.++.+..+++.|...|.++..++|.+ .|.+.|.+....|
T Consensus 848 -----------------------------~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG 898 (1238)
T KOG1127|consen 848 -----------------------------TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVG 898 (1238)
T ss_pred -----------------------------cchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHH
Confidence 334688999999999999999999999988887776 6777777778888
Q ss_pred CHHHHHHHHHHHHHHccCCH---HHHHHHH--c----c----------CChHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 002100 833 QRKAAYDEMTKLIEKARNNA---SAYEKRS--E----Y----------CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLM 893 (967)
Q Consensus 833 ~~~~A~~~~~~al~~~p~~~---~~~~~~~--~----~----------~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~ 893 (967)
+.-++...+....+..-... ...+... + . ++...|--.+++-+.-.|+...++...|..+.
T Consensus 899 ~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlE 978 (1238)
T KOG1127|consen 899 RIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLE 978 (1238)
T ss_pred HHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHH
Confidence 88888887776333322111 1111110 0 0 23333444455556667777777777777777
Q ss_pred hCCCHHHHHHHHHHHHhcC-------CChHHHHHHHHHH-------------------------------HHcCChHHHH
Q 002100 894 DDHKEAEAIAELSRAIAFK-------PDLQLLHLRAAFH-------------------------------DSMGDHLHTQ 935 (967)
Q Consensus 894 ~~g~~~eAi~~~~kal~~~-------p~~~~~~~~a~~~-------------------------------~~~g~~~~A~ 935 (967)
..+.+.+|.+...+++.+- ..+.+--..|+++ +-.+++++++
T Consensus 979 hL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~lFfkndf~~sl 1058 (1238)
T KOG1127|consen 979 HLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTLFFKNDFFSSL 1058 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHHHHHhHHHHHH
Confidence 7777777777777665321 0011111222222 4456777778
Q ss_pred HHHHHHHhcCCCchhHHHHHHHH
Q 002100 936 RDCEAALCLDPNHTDTLELYDKA 958 (967)
Q Consensus 936 ~~~~~al~~~P~~~~~l~l~~r~ 958 (967)
..|++|+.+.-.+.+...++.++
T Consensus 1059 ~~fe~aLsis~se~d~vvLl~kv 1081 (1238)
T KOG1127|consen 1059 EFFEQALSISNSESDKVVLLCKV 1081 (1238)
T ss_pred HHHHHHhhhcccccchhhhhHHH
Confidence 88888888877777655555544
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.80 E-value=4.8e-17 Score=185.86 Aligned_cols=296 Identities=15% Similarity=0.033 Sum_probs=210.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhh
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVET 634 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 634 (967)
....|.+.+..|+++.|.+.+.++.+..| ....+...|.++..+|+++.|...+.++.+..|++....
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~----------- 155 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILV----------- 155 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHH-----------
Confidence 36677777888888888888888877777 455666667888888888888888877777666644211
Q ss_pred hHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHH
Q 002100 635 LQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEK 714 (967)
Q Consensus 635 l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a 714 (967)
....+.++...|++++|...++...+..|+++.+
T Consensus 156 ----------------------------------------------~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~ 189 (409)
T TIGR00540 156 ----------------------------------------------EIARTRILLAQNELHAARHGVDKLLEMAPRHKEV 189 (409)
T ss_pred ----------------------------------------------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 1223455566666777777777777777777777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHH
Q 002100 715 LVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGS 794 (967)
Q Consensus 715 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~ 794 (967)
+..++.++...|++++|++.+++..+........+. ........
T Consensus 190 l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~------------------------------------~l~~~a~~ 233 (409)
T TIGR00540 190 LKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFA------------------------------------DLEQKAEI 233 (409)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHH------------------------------------HHHHHHHH
Confidence 777777777777777777777766654321110000 00001111
Q ss_pred HHHhcccHHHHHHHHHHHhcc------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHH----HHHHHHcc--C
Q 002100 795 VYVDCEKLDLAADCYMNALNI------KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNAS----AYEKRSEY--C 862 (967)
Q Consensus 795 ~~~~~g~~~~A~~~~~~Al~~------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~~--~ 862 (967)
-+...+..+++.+.+.++.+. +.+..+..+|..+...|++++|++.++++++..|++.. .+...... +
T Consensus 234 ~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~ 313 (409)
T TIGR00540 234 GLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPE 313 (409)
T ss_pred HHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCC
Confidence 112223333344455555542 23457888888888888888888888888888888764 33333322 6
Q ss_pred ChHHHHHHHHHhhccCCCCc--hHHHHHHHHHHhCCCHHHHHHHHH--HHHhcCCChHHHHHHHHHHHHcCChHHHHHHH
Q 002100 863 DRDMAKSDLSMATQLDPMRT--YPYRYRAAVLMDDHKEAEAIAELS--RAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDC 938 (967)
Q Consensus 863 ~~~~A~~~l~~al~l~p~~~--~~~~~la~~~~~~g~~~eAi~~~~--kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~ 938 (967)
+.+.++..++++++.+|+++ ..+..+|+++++.|++++|.++|+ ++++..|++..+..+|.++.++|+.++|.+.|
T Consensus 314 ~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 78889999999999999999 889999999999999999999999 68889999887779999999999999999999
Q ss_pred HHHHhc
Q 002100 939 EAALCL 944 (967)
Q Consensus 939 ~~al~~ 944 (967)
++++..
T Consensus 394 ~~~l~~ 399 (409)
T TIGR00540 394 QDSLGL 399 (409)
T ss_pred HHHHHH
Confidence 998754
No 47
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.80 E-value=4.8e-17 Score=185.38 Aligned_cols=335 Identities=17% Similarity=0.079 Sum_probs=270.0
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHH
Q 002100 586 PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLA 665 (967)
Q Consensus 586 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~ 665 (967)
...+...|+..+..|++++|.+.+..++.++|.+..+| +.++.+|.+.|+.+++ +.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay------~tL~~IyEqrGd~eK~------------------l~ 194 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAY------YTLGEIYEQRGDIEKA------------------LN 194 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhH------HHHHHHHHHcccHHHH------------------HH
Confidence 44677778899999999999999999999999999999 8999999999999998 88
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccc-
Q 002100 666 VVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRS- 744 (967)
Q Consensus 666 ~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~- 744 (967)
..-.+--++|.+...|..++....++|.+++|+-+|.+|++.+|.+.+..+..+.+|.++|+...|...|.+++.+.|.
T Consensus 195 ~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~ 274 (895)
T KOG2076|consen 195 FWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV 274 (895)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch
Confidence 8888889999999999999999999999999999999999999999999999999999999999999999999999992
Q ss_pred -hHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc----cCcH-
Q 002100 745 -FEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN----IKHT- 818 (967)
Q Consensus 745 -~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----~~~~- 818 (967)
........+..+...........+++.++.+.....+ .....-++.++.+++...+++.|......-.. .++.
T Consensus 275 d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~-~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e 353 (895)
T KOG2076|consen 275 DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD-EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSE 353 (895)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc-cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhh
Confidence 1211122223344444444557888888888873332 23334567888999999999999887765433 1100
Q ss_pred -------------------------HH-HHHHHHHHHHhCCHHHHHHHHHHHHHHcc-CCHHHHHHHHc----cCChHHH
Q 002100 819 -------------------------RA-HQGLARVYHLKNQRKAAYDEMTKLIEKAR-NNASAYEKRSE----YCDRDMA 867 (967)
Q Consensus 819 -------------------------~a-~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~----~~~~~~A 867 (967)
.+ +..++.++.+..+..+++..+..--...| +.++.|...+. .+++.+|
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~A 433 (895)
T KOG2076|consen 354 WDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEA 433 (895)
T ss_pred hhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 13 55555566666666666655543333224 35566666663 3999999
Q ss_pred HHHHHHhhccCCC-CchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 868 KSDLSMATQLDPM-RTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 868 ~~~l~~al~l~p~-~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
+..|..++...+. +...|+.+|.+|+..|.+++|+..|++++...|+ .++...++.++.++|+.++|++.++....-|
T Consensus 434 l~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 434 LRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 9999999987764 4678999999999999999999999999999999 5699999999999999999999999987444
No 48
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.8e-18 Score=179.08 Aligned_cols=308 Identities=16% Similarity=0.175 Sum_probs=211.0
Q ss_pred chhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc
Q 002100 522 VGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE 600 (967)
Q Consensus 522 ~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g 600 (967)
.|..+.....| .+|+..|..||++.|+++..|.+++..++..++|++|....++.+.++| .+..+...+.++..++
T Consensus 55 ~gn~~yk~k~Y---~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 55 EGNAFYKQKTY---GNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred hcchHHHHhhH---HHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence 35666677777 9999999999999999999999999999999999999999999999999 7889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcC---CCC
Q 002100 601 DYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAND---PGK 677 (967)
Q Consensus 601 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~---p~~ 677 (967)
+..+|.+.++ +..++ ... . ++..+++.+..+ |.-
T Consensus 132 ~~i~A~~~~~--------~~~~~----------~~a-------n------------------al~~~~~~~~s~s~~pac 168 (486)
T KOG0550|consen 132 DLIEAEEKLK--------SKQAY----------KAA-------N------------------ALPTLEKLAPSHSREPAC 168 (486)
T ss_pred HHHHHHHHhh--------hhhhh----------HHh-------h------------------hhhhhhcccccccCCchh
Confidence 9999988877 11111 000 1 133333333332 444
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhh
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALAD 757 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~ 757 (967)
..+....+.++.-.+++.+|...--..+++++.+.++++..|.+++..++.+.|+..|++++.++|+...
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~---------- 238 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQK---------- 238 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhh----------
Confidence 4566678999999999999999999999999999999999999999999999999999999999996540
Q ss_pred cCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHH
Q 002100 758 SSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAA 837 (967)
Q Consensus 758 ~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A 837 (967)
+..+- ..+.....+...|.-.+.. |++..|
T Consensus 239 -------sk~~~-----------~~~k~le~~k~~gN~~fk~--------------------------------G~y~~A 268 (486)
T KOG0550|consen 239 -------SKSAS-----------MMPKKLEVKKERGNDAFKN--------------------------------GNYRKA 268 (486)
T ss_pred -------HHhHh-----------hhHHHHHHHHhhhhhHhhc--------------------------------cchhHH
Confidence 00000 0111123344444444444 444444
Q ss_pred HHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hH
Q 002100 838 YDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQ 916 (967)
Q Consensus 838 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~ 916 (967)
.+.|+.+|.++|++. ..++..|.++|.+..+.|+..+|+...+.+++++|. ..
T Consensus 269 ~E~Yteal~idP~n~--------------------------~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 269 YECYTEALNIDPSNK--------------------------KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred HHHHHHhhcCCcccc--------------------------chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 445444554444321 123344555666666666666666666666666665 34
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 917 LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 917 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
++..+|.++..+++|++|.++|++|++...+ .+....+.+++...
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aL 367 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLAL 367 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHH
Confidence 6666666666666666666666666655544 34444444444333
No 49
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.80 E-value=8.6e-16 Score=188.38 Aligned_cols=407 Identities=10% Similarity=-0.020 Sum_probs=203.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhC--c-hhHHHHHHHHHHhcCChHHHHHHHHHHHh----ccCcchhHHHHHhhcCC
Q 002100 462 QLGVVMLEREEYKDAQNWFKAAVEAG--H-IYSLVGVARTKFKRGHKYSAYKLMNSLIS----DYTPVGWMYQERSLYCS 534 (967)
Q Consensus 462 ~lG~~~~~~g~y~~A~~~f~~al~~~--~-~~a~~~la~~~~~~g~~~~A~~~l~~~i~----~~~~~g~~~~~~~~y~~ 534 (967)
.+-..+...++++.|...+....+.+ | ......+..+|.+.|+.+.|.++|++..+ .|......|...+ +
T Consensus 128 ~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g---~ 204 (697)
T PLN03081 128 ALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAG---N 204 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCc---C
Confidence 33344444555555555555555442 1 33333444555555555555555554433 1111122222222 2
Q ss_pred hHHHHHHHHHhHhhCCC-CchhHHHHHHHHHhcCcHHHHHHHHHHHhccC--CChhHHHHHHHHHHHhcCHHHHHHHHHH
Q 002100 535 GKEKMMDLNTATELDPT-LSYPYKYRAILLVEENKLAAAITEINRIIGFK--VSPDCLELRAWISIALEDYDGALRDVRA 611 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~ 611 (967)
.++|+..|++..+..+. +...+..+-..+...|+.+.+.+.+..+++.. |+...+..+...|.+.|++++|.+.|++
T Consensus 205 ~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred HHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHh
Confidence 25555555555443221 22333344444444555555555544444332 2444455555555555555555555543
Q ss_pred HHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcC-CCChHHHHHHHHHHHH
Q 002100 612 LLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAND-PGKSLLRFRQSLLLLR 690 (967)
Q Consensus 612 al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~-p~~~~~~~~~g~~~~~ 690 (967)
.. +.+...| ..+...|...+++++| +..|.++.+.. .-+...+..+...+.+
T Consensus 285 m~---~~~~vt~------n~li~~y~~~g~~~eA------------------~~lf~~M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 285 MP---EKTTVAW------NSMLAGYALHGYSEEA------------------LCLYYEMRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred CC---CCChhHH------HHHHHHHHhCCCHHHH------------------HHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 31 2223333 2233344444445444 44444444322 1123344444455555
Q ss_pred hcCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHH
Q 002100 691 LNSQKAAMRSLRLARNYS-TSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVI 769 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~ 769 (967)
.|++++|...+...++.. +.+...+..+...|.+.|+.++|.+.|++..+ |
T Consensus 338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-------------------------- 389 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-------------------------- 389 (697)
T ss_pred ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C--------------------------
Confidence 555555555555555443 23344445555555555555555555554432 1
Q ss_pred HHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc--cCcHH-HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002100 770 QLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN--IKHTR-AHQGLARVYHLKNQRKAAYDEMTKLIE 846 (967)
Q Consensus 770 ~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~~~~~-a~~~la~~~~~~g~~~~A~~~~~~al~ 846 (967)
+...|+.+...|...|+.++|++.|++..+ ..|.. .+..+...+...|..++|.+.|+...+
T Consensus 390 ---------------d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 390 ---------------NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred ---------------CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 113566666666666666666666666655 22222 555566666666666666666666655
Q ss_pred HccC--CHHHHHHH----HccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHH
Q 002100 847 KARN--NASAYEKR----SEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLH 919 (967)
Q Consensus 847 ~~p~--~~~~~~~~----~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~ 919 (967)
..+- +...|..+ +..|+.++|.+.+++. ...| +...|..+...+...|+++.|...+++.++..|+ ...|.
T Consensus 455 ~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~ 532 (697)
T PLN03081 455 NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532 (697)
T ss_pred hcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence 3221 11222222 2336666666666543 2233 2345666666666677777777777777776666 33566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh
Q 002100 920 LRAAFHDSMGDHLHTQRDCEAALC 943 (967)
Q Consensus 920 ~~a~~~~~~g~~~~A~~~~~~al~ 943 (967)
.+..+|.+.|++++|.+.++...+
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 666677777777777777666543
No 50
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.78 E-value=1.2e-18 Score=184.99 Aligned_cols=180 Identities=16% Similarity=0.205 Sum_probs=154.3
Q ss_pred ccccccccCCCCcccEEEEEcC-----eEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHc
Q 002100 243 SMEDEECSTSDEDWDMSFCIGN-----DEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSR 317 (967)
Q Consensus 243 ~~~~~~~~~~~~~~Dv~~~v~~-----~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y 317 (967)
........+++..+||+|+|++ +.|||||.|||..|.+|.+||+|++.|+...+|.+++ +.|.+|..+|+|||
T Consensus 102 ~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpd--vepaaFl~~L~flY 179 (521)
T KOG2075|consen 102 RERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPD--VEPAAFLAFLRFLY 179 (521)
T ss_pred HHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCC--cChhHhHHHHHHHh
Confidence 3444456688999999999974 6899999999999999999999999999888999987 99999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhhcCCchh
Q 002100 318 TKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNPN 397 (967)
Q Consensus 318 t~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~l~~~~ 397 (967)
++.+ .+..++++.+|.+|++|.++.|.+.|.++|...+..+..++.+...|..++-++|...|++.|..++...+..+.
T Consensus 180 sdev-~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EG 258 (521)
T KOG2075|consen 180 SDEV-KLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEG 258 (521)
T ss_pred cchh-hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccc
Confidence 9999 899999999999999999999999999999999983444555666699999999999999999999996555444
Q ss_pred ----------HhhhhccchHHHHHHhhcchHHHHHHHHHHhccC
Q 002100 398 ----------VMRIFCSAEARERLAMVGHASFVLYYFLSQIGME 431 (967)
Q Consensus 398 ----------~~~ll~s~~~~~r~~~~~~e~~~l~~~l~~l~~~ 431 (967)
+++++.++.++ + .+..++.+++.|...+
T Consensus 259 f~did~~~dt~~evl~r~~l~-----~-~e~~lfeA~lkw~~~e 296 (521)
T KOG2075|consen 259 FCDIDSTRDTYEEVLRRDTLE-----A-REFRLFEAALKWAEAE 296 (521)
T ss_pred eeehhhHHHHHHHHHhhcccc-----h-hHHHHHHHHHhhccCc
Confidence 44555555555 3 4678899999999754
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=3.4e-17 Score=194.02 Aligned_cols=245 Identities=16% Similarity=0.060 Sum_probs=208.9
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhc---------CcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEE---------NKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGA 605 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A 605 (967)
++|+..|++|++++|+++.+|..+|.++... +++++|+..++++++++| ++.++..+|.++...|++++|
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A 357 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVG 357 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Confidence 8999999999999999999999999887643 448999999999999999 899999999999999999999
Q ss_pred HHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHH
Q 002100 606 LRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQS 685 (967)
Q Consensus 606 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g 685 (967)
+..|+++++++|++..++ +.++.++...|++++| +..++++++++|.++..+..++
T Consensus 358 ~~~~~~Al~l~P~~~~a~------~~lg~~l~~~G~~~eA------------------i~~~~~Al~l~P~~~~~~~~~~ 413 (553)
T PRK12370 358 SLLFKQANLLSPISADIK------YYYGWNLFMAGQLEEA------------------LQTINECLKLDPTRAAAGITKL 413 (553)
T ss_pred HHHHHHHHHhCCCCHHHH------HHHHHHHHHCCCHHHH------------------HHHHHHHHhcCCCChhhHHHHH
Confidence 999999999999999988 7789999999999999 9999999999999887777777
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCc
Q 002100 686 LLLLRLNSQKAAMRSLRLARNYS-TSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPES 764 (967)
Q Consensus 686 ~~~~~~g~~~~A~~~l~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~ 764 (967)
.+++..|++++|+..+++++... |+++.++..+|.++..+|++++|+..+.+.....|...
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~------------------ 475 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGL------------------ 475 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhH------------------
Confidence 77888999999999999998875 78888899999999999999999999999877777444
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhCCHHHHHHHHH
Q 002100 765 SAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKNQRKAAYDEMT 842 (967)
Q Consensus 765 ~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~A~~~~~ 842 (967)
.+.+.++.+|...|+ +|...+++.++..... ....++.+|.-.|+.+.+..+ +
T Consensus 476 ----------------------~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~ 530 (553)
T PRK12370 476 ----------------------IAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-N 530 (553)
T ss_pred ----------------------HHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-H
Confidence 567777888887774 7777777766622221 223378888888888888877 6
Q ss_pred HHHHH
Q 002100 843 KLIEK 847 (967)
Q Consensus 843 ~al~~ 847 (967)
++.+.
T Consensus 531 ~~~~~ 535 (553)
T PRK12370 531 KFKNE 535 (553)
T ss_pred Hhhcc
Confidence 66654
No 52
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.78 E-value=1.8e-15 Score=185.45 Aligned_cols=420 Identities=11% Similarity=-0.004 Sum_probs=261.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhCc----hhHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCc-------chhHHH
Q 002100 460 FHQLGVVMLEREEYKDAQNWFKAAVEAGH----IYSLVGVARTKFKRGHKYSAYKLMNSLISD-YTP-------VGWMYQ 527 (967)
Q Consensus 460 ~~~lG~~~~~~g~y~~A~~~f~~al~~~~----~~a~~~la~~~~~~g~~~~A~~~l~~~i~~-~~~-------~g~~~~ 527 (967)
|..+-..+...|++++|++.|+.....++ ......+...+.+.++...+..++..++.. +.+ +..+|.
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~ 169 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV 169 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHh
Confidence 44455567788999999999998876532 344445556666667776666666655441 111 111122
Q ss_pred HHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC--ChhHHHHHHHHHHHhcCHHHH
Q 002100 528 ERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV--SPDCLELRAWISIALEDYDGA 605 (967)
Q Consensus 528 ~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A 605 (967)
+.+ +.++|...|++..+ | +...|..+...|.+.|++++|++.|++..+..+ +...+..+...+...|+.+.+
T Consensus 170 k~g---~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 170 KCG---MLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred cCC---CHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 222 33555555555432 2 334455555555555555555555555544332 344444444455555555555
Q ss_pred HHHHHHHHHhCC-CchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHH
Q 002100 606 LRDVRALLTLDP-SYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQ 684 (967)
Q Consensus 606 ~~~~~~al~l~p-~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~ 684 (967)
.+.+..+++..- .+...+ ..+...|...+++++| ...|+++. +.+...|..+
T Consensus 244 ~~l~~~~~~~g~~~d~~~~------n~Li~~y~k~g~~~~A------------------~~vf~~m~---~~~~vt~n~l 296 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVS------CALIDMYSKCGDIEDA------------------RCVFDGMP---EKTTVAWNSM 296 (697)
T ss_pred HHHHHHHHHhCCCccceeH------HHHHHHHHHCCCHHHH------------------HHHHHhCC---CCChhHHHHH
Confidence 555444444321 111112 2223344444444444 34443332 2234455555
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCC
Q 002100 685 SLLLLRLNSQKAAMRSLRLARNY--STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNP 762 (967)
Q Consensus 685 g~~~~~~g~~~~A~~~l~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~ 762 (967)
...|.+.|++++|+..|++..+. .|+ ...+..+...+.+.|++++|.+.+...++...
T Consensus 297 i~~y~~~g~~~eA~~lf~~M~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~------------------- 356 (697)
T PLN03081 297 LAGYALHGYSEEALCLYYEMRDSGVSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF------------------- 356 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHhCC-------------------
Confidence 55555555555555555555432 222 33455555555555555555555555543321
Q ss_pred CchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002100 763 ESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMT 842 (967)
Q Consensus 763 ~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 842 (967)
+.....++.+...|.+.|++++|...|++..+++ ..+|..+...|.+.|+.++|++.|+
T Consensus 357 --------------------~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d-~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 357 --------------------PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN-LISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred --------------------CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCC-eeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 1223578889999999999999999999887643 3488999999999999999999999
Q ss_pred HHHHHc--cCCHHHHHHHH----ccCChHHHHHHHHHhhccCC--CCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 843 KLIEKA--RNNASAYEKRS----EYCDRDMAKSDLSMATQLDP--MRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 843 ~al~~~--p~~~~~~~~~~----~~~~~~~A~~~l~~al~l~p--~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
+..+.. |+ ...|...- ..|..++|...|+...+..+ .+...|..+..+|.+.|++++|.+.+++. ...|+
T Consensus 416 ~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~ 493 (697)
T PLN03081 416 RMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT 493 (697)
T ss_pred HHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC
Confidence 988754 43 33333322 34999999999999876432 23456788999999999999999999875 46677
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 002100 915 LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELY 955 (967)
Q Consensus 915 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~ 955 (967)
...|..+...+...|+.+.|...+++.+++.|++.....++
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L 534 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVL 534 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHH
Confidence 77888899999999999999999999999999876543333
No 53
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.77 E-value=6.3e-16 Score=173.49 Aligned_cols=428 Identities=16% Similarity=0.113 Sum_probs=275.4
Q ss_pred HHHhhcchHHHHHHHHHHhccCcccccchHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhC--
Q 002100 410 RLAMVGHASFVLYYFLSQIGMEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAG-- 487 (967)
Q Consensus 410 r~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~-- 487 (967)
|+....++.++|..+.-.+. +...+..+.+.+.+..+........|+.++..|...|.-..|+...++.+...
T Consensus 315 r~~~~qnd~ai~d~Lt~al~-----~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALS-----RCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHhhhcchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 34444455555554433332 22334445555555555555667789999999999999999999999999886
Q ss_pred c--hhHHHHHHH-HHHhcCChHHHHHHHHHHHhcc------------CcchhHHHHHhhcC--------ChHHHHHHHHH
Q 002100 488 H--IYSLVGVAR-TKFKRGHKYSAYKLMNSLISDY------------TPVGWMYQERSLYC--------SGKEKMMDLNT 544 (967)
Q Consensus 488 ~--~~a~~~la~-~~~~~g~~~~A~~~l~~~i~~~------------~~~g~~~~~~~~y~--------~~~~A~~~~~~ 544 (967)
| .......++ +.-..+..++++++..++++.+ .-.|..|..+..-. ...++++.+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 4 223333333 3445677778999999888822 22345554433111 35889999999
Q ss_pred hHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC--ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHH
Q 002100 545 ATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV--SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMF 622 (967)
Q Consensus 545 al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 622 (967)
|++.+|+|+.+.++++.-|..+++.+.|+....++++.++ ++.+|..+|.++...+++.+|+.....+++..|+|...
T Consensus 470 av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l 549 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL 549 (799)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999999999988 89999999999999999999999999999999887655
Q ss_pred hhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCC---------hHHHHHHHHHHHHhcC
Q 002100 623 YGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGK---------SLLRFRQSLLLLRLNS 693 (967)
Q Consensus 623 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~---------~~~~~~~g~~~~~~g~ 693 (967)
. .....+....++-+++ +......+..-... .......+.+.....+
T Consensus 550 ~------~~~~~i~~~~~~~e~~------------------l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q 605 (799)
T KOG4162|consen 550 M------DGKIHIELTFNDREEA------------------LDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQ 605 (799)
T ss_pred c------hhhhhhhhhcccHHHH------------------HHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccc
Confidence 4 2223333334444444 33333333221110 1111111222222223
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH-hcccchHHHHHHHHHhhhcCCCCCchHHHHHHH
Q 002100 694 QKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI-SIQRSFEAFFLKAYALADSSLNPESSAYVIQLL 772 (967)
Q Consensus 694 ~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al-~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~l 772 (967)
..+|++..+++... ...-...-..+.. +.+.. .-.|+..-+.
T Consensus 606 ~~~a~s~sr~ls~l-----------~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~----------------------- 648 (799)
T KOG4162|consen 606 PTDAISTSRYLSSL-----------VASQLKSAGSELK---LPSSTVLPGPDSLWYL----------------------- 648 (799)
T ss_pred ccccchhhHHHHHH-----------HHhhhhhcccccc---cCcccccCCCCchHHH-----------------------
Confidence 33333332222110 0000000001111 11100 0111111000
Q ss_pred HHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002100 773 EEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKNQRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 773 e~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 850 (967)
....|...+..+...++.++|..|+.+|-.+.+.. .++..|.++..+|++++|.+.|..++..+|+
T Consensus 649 ------------~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~ 716 (799)
T KOG4162|consen 649 ------------LQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD 716 (799)
T ss_pred ------------HHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 01455666677777777777777777777655543 6666777777777777777777777777777
Q ss_pred CHHHHHHHHcc----CChHHHHH--HHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 002100 851 NASAYEKRSEY----CDRDMAKS--DLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL 915 (967)
Q Consensus 851 ~~~~~~~~~~~----~~~~~A~~--~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~ 915 (967)
+......+|.. |+...|.. .+..++++||.++.+|+++|.++.+.|+.++|.++|..++++.+..
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 77666666632 55555555 8888999999999999999999999999999999999999988763
No 54
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.77 E-value=9e-19 Score=163.54 Aligned_cols=160 Identities=19% Similarity=0.312 Sum_probs=130.6
Q ss_pred ccccccccccccCCCCcccEEEEEc---CeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHh
Q 002100 239 RDDISMEDEECSTSDEDWDMSFCIG---NDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEF 315 (967)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~Dv~~~v~---~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~ 315 (967)
.+.+......++..+.|||++|.++ ++.|+|||.|||+||++++ |.++-.| .+.+..++| +++++|..+++|
T Consensus 50 ~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de-kse~~~~dD--ad~Ea~~t~iRW 124 (280)
T KOG4591|consen 50 ISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE-KSEELDLDD--ADFEAFHTAIRW 124 (280)
T ss_pred HHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc-chhhhcccc--cCHHHHHHhhee
Confidence 3333333445566789999999998 7889999999999999876 3222222 234566666 999999999999
Q ss_pred HcCCCCC-CCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhh----
Q 002100 316 SRTKMLD-SFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELP---- 390 (967)
Q Consensus 316 ~Yt~~~~-~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~---- 390 (967)
|||++++ ..+.+.+.+++.+|++|+++-|++.|++-+...+. ++||+.++++|++.++..|...|-..|..+|+
T Consensus 125 IYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~-V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~~ 203 (280)
T KOG4591|consen 125 IYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLH-VDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLGK 203 (280)
T ss_pred eeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-HhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccCh
Confidence 9999995 34566788999999999999999999999999999 99999999999999999999999999999998
Q ss_pred ---hcCCchhHhhhhcc
Q 002100 391 ---CSMQNPNVMRIFCS 404 (967)
Q Consensus 391 ---~~l~~~~~~~ll~s 404 (967)
.+++..-+-+++.+
T Consensus 204 a~FaqMs~aLLYklId~ 220 (280)
T KOG4591|consen 204 ADFAQMSAALLYKLIDG 220 (280)
T ss_pred HHHHhccHHHHHHHHcC
Confidence 34555555555555
No 55
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.77 E-value=1.4e-15 Score=172.88 Aligned_cols=300 Identities=13% Similarity=0.017 Sum_probs=207.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHH-HHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhh
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELR-AWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVET 634 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 634 (967)
.+..|...+..|+|++|.+.+.+.-+..+++..++.+ +......|+++.|...+.++.+.+|++....
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~----------- 155 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPV----------- 155 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHH-----------
Confidence 5666777777777777776666655544444444444 4444777777777777777777666644332
Q ss_pred hHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHH
Q 002100 635 LQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEK 714 (967)
Q Consensus 635 l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a 714 (967)
....+.++...|++++|+..+++..+.+|+++.+
T Consensus 156 ----------------------------------------------~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~a 189 (398)
T PRK10747 156 ----------------------------------------------EITRVRIQLARNENHAARHGVDKLLEVAPRHPEV 189 (398)
T ss_pred ----------------------------------------------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Confidence 1122455566667777777777777777777777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHH
Q 002100 715 LVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGS 794 (967)
Q Consensus 715 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~ 794 (967)
+..++.+|...|++++|+..+.+..+..+....... -+ ...++..+..
T Consensus 190 l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~--------------------~l------------~~~a~~~l~~ 237 (398)
T PRK10747 190 LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRA--------------------ML------------EQQAWIGLMD 237 (398)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH--------------------HH------------HHHHHHHHHH
Confidence 777777777777777777666666654442210000 00 0012211111
Q ss_pred HHHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc--CChHHHHHH
Q 002100 795 VYVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY--CDRDMAKSD 870 (967)
Q Consensus 795 ~~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~--~~~~~A~~~ 870 (967)
......+-+...+.++..-+ ++.+.++..+|..+...|+.++|.+.++++++..| +.......+.. ++.++++..
T Consensus 238 ~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 238 QAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLIPRLKTNNPEQLEKV 316 (398)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhccCCChHHHHHH
Confidence 11122222333333333222 44566888899999999999999999999998544 55555555543 889999999
Q ss_pred HHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 871 LSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 871 l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
.++.++.+|+++..+..+|.++...+++++|.++|+++++..|+...+..++.++.++|+.++|...|++++.+.
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999888899999999999999999999998764
No 56
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.76 E-value=5.7e-16 Score=176.85 Aligned_cols=385 Identities=12% Similarity=0.029 Sum_probs=260.7
Q ss_pred hHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002100 535 GKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALL 613 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al 613 (967)
...|+..|-++++++|+.+.+|..+|.+|....+...|.+.|.+|.++|+ +.++....+..|....+++.|......+-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 46777777777777777777777777777777777777777777777777 77777777777777777777777765555
Q ss_pred HhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcC
Q 002100 614 TLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNS 693 (967)
Q Consensus 614 ~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~ 693 (967)
+..|.....+.. ..+|..|...++...+ +..++.++..+|.+...|..+|.+|.+.|.
T Consensus 554 qka~a~~~k~nW----~~rG~yyLea~n~h~a------------------V~~fQsALR~dPkD~n~W~gLGeAY~~sGr 611 (1238)
T KOG1127|consen 554 QKAPAFACKENW----VQRGPYYLEAHNLHGA------------------VCEFQSALRTDPKDYNLWLGLGEAYPESGR 611 (1238)
T ss_pred hhchHHHHHhhh----hhccccccCccchhhH------------------HHHHHHHhcCCchhHHHHHHHHHHHHhcCc
Confidence 555544333321 2355666666666665 777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHH--------HHHHHHhhhcCCCCCc-
Q 002100 694 QKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAF--------FLKAYALADSSLNPES- 764 (967)
Q Consensus 694 ~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~--------~~~~~~la~~~~~~~~- 764 (967)
+..|++.|.++..++|.+.-..+..+.+....|+|.+|+..+...+......... ...+...+-.++....
T Consensus 612 y~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kav 691 (1238)
T KOG1127|consen 612 YSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAV 691 (1238)
T ss_pred eehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 7777777777777777777777777777777777777777777666443311100 0000000001111100
Q ss_pred --hHHHHHHHHHHhcCC-CCC------------------CchHHHHHHhHHHH---Hhccc---H---HHHHHHHHHHhc
Q 002100 765 --SAYVIQLLEEALRCP-SDG------------------LRKGQALNNLGSVY---VDCEK---L---DLAADCYMNALN 814 (967)
Q Consensus 765 --~~~a~~~le~~~~~~-~~~------------------~~~~~a~~~lg~~~---~~~g~---~---~~A~~~~~~Al~ 814 (967)
.++.++.+.-.+... .+. +..... ..++... ...+. . --|.+++-..++
T Consensus 692 d~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~-h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls 770 (1238)
T KOG1127|consen 692 DFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNM-HYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS 770 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHH-HHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH
Confidence 011111111110000 000 111100 0111111 01111 1 245566666666
Q ss_pred -cCcHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHccCCHHHHHHHHcc---CChHHHHHHHHHhhccCCCCc
Q 002100 815 -IKHTRAHQGLARVYHL--------KNQRKAAYDEMTKLIEKARNNASAYEKRSEY---CDRDMAKSDLSMATQLDPMRT 882 (967)
Q Consensus 815 -~~~~~a~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~---~~~~~A~~~l~~al~l~p~~~ 882 (967)
..+...|++||..|+. +.+...|+..+.+++++..++...|+.+|.. +++.-|..+|-+.+.+.|...
T Consensus 771 l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~ 850 (1238)
T KOG1127|consen 771 LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCH 850 (1238)
T ss_pred HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccch
Confidence 4456689999998876 2344689999999999999999999999964 889999999999999999999
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 883 YPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAAL 942 (967)
Q Consensus 883 ~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al 942 (967)
-.|.++|.++.+..+++-|...|.++..++|.+ ..+...+.+....|+.-++...+...-
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~ 911 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSD 911 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999995 488888999999999999998888733
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.5e-15 Score=155.62 Aligned_cols=277 Identities=13% Similarity=0.025 Sum_probs=137.1
Q ss_pred HHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHh
Q 002100 575 EINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYD 653 (967)
Q Consensus 575 ~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~ 653 (967)
.+-.-...-| +...+..+|.+++..|++++|+..|+++..++|.+.... -..+.+....+++++-
T Consensus 220 l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M------D~Ya~LL~~eg~~e~~-------- 285 (564)
T KOG1174|consen 220 LMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM------DLYAVLLGQEGGCEQD-------- 285 (564)
T ss_pred HHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH------HHHHHHHHhccCHhhH--------
Confidence 3333333344 455555555555555555555555555555555554444 2334444444444443
Q ss_pred hhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHH
Q 002100 654 RWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALA 733 (967)
Q Consensus 654 ~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~ 733 (967)
-......+..+......|+.-+..++..+++..|+..-+++++.+|.+.+++...|.++...|+.++|+-
T Consensus 286 ----------~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 286 ----------SALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred ----------HHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHH
Confidence 1222223333333333444444444444555555555555555555555555555555555555555555
Q ss_pred HHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHh
Q 002100 734 KAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNAL 813 (967)
Q Consensus 734 ~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 813 (967)
.|..|..+.|... ..|..|-..|...|++.+|...-+.++
T Consensus 356 aFR~Aq~Lap~rL----------------------------------------~~Y~GL~hsYLA~~~~kEA~~~An~~~ 395 (564)
T KOG1174|consen 356 AFRTAQMLAPYRL----------------------------------------EIYRGLFHSYLAQKRFKEANALANWTI 395 (564)
T ss_pred HHHHHHhcchhhH----------------------------------------HHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 5555554444222 334444444444444444444444444
Q ss_pred c--cCcHHHHHHHH-HHHHH-hCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHH
Q 002100 814 N--IKHTRAHQGLA-RVYHL-KNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPY 885 (967)
Q Consensus 814 ~--~~~~~a~~~la-~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~ 885 (967)
+ .+...++..+| .+++. ---.++|.+.+++++...|....+-...+++ |.+..++..+++++...|+ ...+
T Consensus 396 ~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH 474 (564)
T KOG1174|consen 396 RLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLH 474 (564)
T ss_pred HHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHH
Confidence 4 12222333332 22221 1123444444555555555444444444432 4444555555555554443 4456
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCChH
Q 002100 886 RYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ 916 (967)
Q Consensus 886 ~~la~~~~~~g~~~eAi~~~~kal~~~p~~~ 916 (967)
..+|.++...+.+++|+..|.+|+.++|+++
T Consensus 475 ~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 475 NHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 7788888888888888888888888888865
No 58
>PLN03077 Protein ECB2; Provisional
Probab=99.76 E-value=5.2e-15 Score=185.96 Aligned_cols=439 Identities=11% Similarity=0.000 Sum_probs=176.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhC--c-hhHHHHHHHHHHhcCChHHHHHHHHHHHhc--------cCcchhHHH
Q 002100 459 AFHQLGVVMLEREEYKDAQNWFKAAVEAG--H-IYSLVGVARTKFKRGHKYSAYKLMNSLISD--------YTPVGWMYQ 527 (967)
Q Consensus 459 a~~~lG~~~~~~g~y~~A~~~f~~al~~~--~-~~a~~~la~~~~~~g~~~~A~~~l~~~i~~--------~~~~g~~~~ 527 (967)
.|..+-..|.+.|++++|+..|++..+.+ | ......+...+.+.|+...|.+++..++.. +..+..+|.
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~ 334 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence 34444445555555555555555555442 2 222233333444455555555554444331 111112222
Q ss_pred HHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhc--cCCChhHHHHHHHHHHHhcCHHHH
Q 002100 528 ERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIG--FKVSPDCLELRAWISIALEDYDGA 605 (967)
Q Consensus 528 ~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~la~~~~~~g~~~~A 605 (967)
+.+ +.++|...|++.. ..+...|..+...|.+.|++++|++.|++... ..|+...+..+-..+...|++++|
T Consensus 335 k~g---~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a 408 (857)
T PLN03077 335 SLG---SWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG 408 (857)
T ss_pred hcC---CHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHH
Confidence 222 2244444444432 12333444444445555555555555544322 223333333333344444555555
Q ss_pred HHHHHHHHHhCCCc-hHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHH
Q 002100 606 LRDVRALLTLDPSY-MMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQ 684 (967)
Q Consensus 606 ~~~~~~al~l~p~~-~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~ 684 (967)
.+.+..+++..... ...+ ..+-..|...+++++| ...|+++.+ .+...|..+
T Consensus 409 ~~l~~~~~~~g~~~~~~~~------n~Li~~y~k~g~~~~A------------------~~vf~~m~~---~d~vs~~~m 461 (857)
T PLN03077 409 VKLHELAERKGLISYVVVA------NALIEMYSKCKCIDKA------------------LEVFHNIPE---KDVISWTSI 461 (857)
T ss_pred HHHHHHHHHhCCCcchHHH------HHHHHHHHHcCCHHHH------------------HHHHHhCCC---CCeeeHHHH
Confidence 55544444432211 1111 1222333444444444 333333321 122334444
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCc
Q 002100 685 SLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPES 764 (967)
Q Consensus 685 g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~ 764 (967)
...|.+.|++++|+..|++.....+.+...+..+-..+...|+.+.+.+.+..+++..-....+... .+.+.+...++
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~n--aLi~~y~k~G~ 539 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN--ALLDLYVRCGR 539 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceech--HHHHHHHHcCC
Confidence 4444445555555555544443322223333333334444444444444444444322111000000 11111112223
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHH-HHHHHHHHHHHhCCHHHHHHHH
Q 002100 765 SAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTR-AHQGLARVYHLKNQRKAAYDEM 841 (967)
Q Consensus 765 ~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~-a~~~la~~~~~~g~~~~A~~~~ 841 (967)
.+.+...++.. ..+...|+.+...|...|+.++|++.|++..+. .|.. .+..+-..+...|+.++|.+.|
T Consensus 540 ~~~A~~~f~~~-------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 540 MNYAWNQFNSH-------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred HHHHHHHHHhc-------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHH
Confidence 33333333332 122234444444555555555555555544431 1111 3333334444455555555555
Q ss_pred HHHHHHccC--CHHHHHHHH----ccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 002100 842 TKLIEKARN--NASAYEKRS----EYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL 915 (967)
Q Consensus 842 ~~al~~~p~--~~~~~~~~~----~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~ 915 (967)
+...+..+- +...|..+. ..|+.++|...+++. ...|+ +..|..+-..+...++.+.|....++++++.|+.
T Consensus 613 ~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~ 690 (857)
T PLN03077 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNS 690 (857)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Confidence 544432211 122222222 124455555444442 22332 3333333334444445555544455555555542
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 916 -QLLHLRAAFHDSMGDHLHTQRDCEAA 941 (967)
Q Consensus 916 -~~~~~~a~~~~~~g~~~~A~~~~~~a 941 (967)
..|..++.+|...|+|++|.+..+..
T Consensus 691 ~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 691 VGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred cchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 24444445555555555554444433
No 59
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.76 E-value=1.8e-15 Score=172.88 Aligned_cols=305 Identities=12% Similarity=0.079 Sum_probs=230.0
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhH--HHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhc
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYS--LVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLY 532 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a--~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y 532 (967)
.++......|...+..|+|+.|.+.+.++.+..|... ....|+++..+|+.
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~--------------------------- 134 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDE--------------------------- 134 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCH---------------------------
Confidence 3555667789999999999999999999999866433 33334444444433
Q ss_pred CChHHHHHHHHHhHhhCCCCc-hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHH
Q 002100 533 CSGKEKMMDLNTATELDPTLS-YPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVR 610 (967)
Q Consensus 533 ~~~~~A~~~~~~al~l~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~ 610 (967)
+.|...+.++.+..|+.. .+...++.+++..|++++|+..++++++..| ++.++..++.++...|++++|++.+.
T Consensus 135 ---~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~ 211 (409)
T TIGR00540 135 ---ARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIID 211 (409)
T ss_pred ---HHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 778888888888888875 4566679999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCC----CChHHHHHHHH
Q 002100 611 ALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDP----GKSLLRFRQSL 686 (967)
Q Consensus 611 ~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p----~~~~~~~~~g~ 686 (967)
+.++..+.++....... ...+ .+..+++ ........+.++.+..| +++.++...+.
T Consensus 212 ~l~k~~~~~~~~~~~l~-----~~a~--~~~l~~~-------------~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~ 271 (409)
T TIGR00540 212 NMAKAGLFDDEEFADLE-----QKAE--IGLLDEA-------------MADEGIDGLLNWWKNQPRHRRHNIALKIALAE 271 (409)
T ss_pred HHHHcCCCCHHHHHHHH-----HHHH--HHHHHHH-------------HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHH
Confidence 99988554444331110 0111 1111111 00112556667777677 57889999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCchhHHH--HHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCc
Q 002100 687 LLLRLNSQKAAMRSLRLARNYSTSEHEKL--VYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPES 764 (967)
Q Consensus 687 ~~~~~g~~~~A~~~l~~al~~~p~~~~a~--~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~ 764 (967)
.+...|++++|+..++++++..|++.... ..........++.+++++.++++++..|+++
T Consensus 272 ~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~------------------ 333 (409)
T TIGR00540 272 HLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP------------------ 333 (409)
T ss_pred HHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh------------------
Confidence 99999999999999999999999886532 2233334445778888888888888877544
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHH--HHhccCcHH-HHHHHHHHHHHhCCHHHHHHHH
Q 002100 765 SAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYM--NALNIKHTR-AHQGLARVYHLKNQRKAAYDEM 841 (967)
Q Consensus 765 ~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~--~Al~~~~~~-a~~~la~~~~~~g~~~~A~~~~ 841 (967)
. ...+..+|.+++..|++++|.++|+ ++++..|.. .+..+|.++.++|+.++|.+.|
T Consensus 334 -------------------~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 334 -------------------K-CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred -------------------h-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1 2567789999999999999999999 576644433 4669999999999999999999
Q ss_pred HHHHHH
Q 002100 842 TKLIEK 847 (967)
Q Consensus 842 ~~al~~ 847 (967)
++++..
T Consensus 394 ~~~l~~ 399 (409)
T TIGR00540 394 QDSLGL 399 (409)
T ss_pred HHHHHH
Confidence 998764
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.75 E-value=1.1e-16 Score=174.07 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=88.9
Q ss_pred HHHHHHHHhcCC---C-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 664 LAVVHHMLANDP---G-KSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 664 l~~~~~~l~~~p---~-~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
+..+.+++...| . .+..++.+|.+|...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++
T Consensus 46 i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 125 (296)
T PRK11189 46 LARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVL 125 (296)
T ss_pred HHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666664333 2 245566777777777777777777777777777777777777777777777777777777777
Q ss_pred hcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH
Q 002100 740 SIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR 819 (967)
Q Consensus 740 ~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 819 (967)
+++|++. .++.++|.++...|++++|++.|+++++.+|.+
T Consensus 126 ~l~P~~~----------------------------------------~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 126 ELDPTYN----------------------------------------YAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred HhCCCCH----------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 7777555 566667776666677777776666666654443
Q ss_pred HHHHH-HHHHHHhCCHHHHHHHHHHHHH
Q 002100 820 AHQGL-ARVYHLKNQRKAAYDEMTKLIE 846 (967)
Q Consensus 820 a~~~l-a~~~~~~g~~~~A~~~~~~al~ 846 (967)
.+..+ ..+....+++++|+..+.+.+.
T Consensus 166 ~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 166 PYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 22111 1123344556666666655443
No 61
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.75 E-value=6.9e-14 Score=173.41 Aligned_cols=376 Identities=13% Similarity=0.034 Sum_probs=264.7
Q ss_pred HHHhhcCChHHHHHHHHHHHHhCc----hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcc------hhHHHHHhhcCC
Q 002100 465 VVMLEREEYKDAQNWFKAAVEAGH----IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPV------GWMYQERSLYCS 534 (967)
Q Consensus 465 ~~~~~~g~y~~A~~~f~~al~~~~----~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~------g~~~~~~~~y~~ 534 (967)
..+.+.|++++|++.|++..+.+. ......+...+.+.|...+|...+..... ++. -..+...+ +
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~LL~a~~k~g---~ 452 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNMLMSVCASSQ---D 452 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCc---C
Confidence 345578999999999998877653 11222344556778888888888876654 221 11222223 5
Q ss_pred hHHHHHHHHHhHhhCC-CCchhHHHHHHHHHhcCcHHHHHHHHHHHhcc--CCChhHHHHHHHHHHHhcCHHHHHHHHHH
Q 002100 535 GKEKMMDLNTATELDP-TLSYPYKYRAILLVEENKLAAAITEINRIIGF--KVSPDCLELRAWISIALEDYDGALRDVRA 611 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~la~~~~~~g~~~~A~~~~~~ 611 (967)
.++|...|++..+... -+...|..+-..|.+.|++++|.+.|++..+. .|+...|..+...|.+.|++++|++.|..
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5889999988887643 35677888888999999999999999988765 45888889999999999999999999988
Q ss_pred HHHh--CCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc----CCCChHHHHHHH
Q 002100 612 LLTL--DPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN----DPGKSLLRFRQS 685 (967)
Q Consensus 612 al~l--~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~----~p~~~~~~~~~g 685 (967)
..+. .|+. ..+ ..+-..+...+++++| ...+.++... .|+ ...|..+.
T Consensus 533 M~~~Gv~PD~-vTY------nsLI~a~~k~G~~deA------------------~~lf~eM~~~~~gi~PD-~vTynaLI 586 (1060)
T PLN03218 533 MRSKNVKPDR-VVF------NALISACGQSGAVDRA------------------FDVLAEMKAETHPIDPD-HITVGALM 586 (1060)
T ss_pred HHHcCCCCCH-HHH------HHHHHHHHHCCCHHHH------------------HHHHHHHHHhcCCCCCc-HHHHHHHH
Confidence 8665 4552 333 3344556667777777 7777777652 343 45677777
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--ccchHHHHHHHHHhhhcCCCC
Q 002100 686 LLLLRLNSQKAAMRSLRLARNYS-TSEHEKLVYEGWILYDTGHREEALAKAEESISI--QRSFEAFFLKAYALADSSLNP 762 (967)
Q Consensus 686 ~~~~~~g~~~~A~~~l~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~~~~la~~~~~~ 762 (967)
..|.+.|++++|.+.|+...+.. +.+...|..+...|.+.|++++|+..|++..+. .|+
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD------------------ 648 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD------------------ 648 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------------------
Confidence 88899999999999999988876 445678888888999999999999999887754 332
Q ss_pred CchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhCCHHHHHH
Q 002100 763 ESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK---HTRAHQGLARVYHLKNQRKAAYD 839 (967)
Q Consensus 763 ~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~---~~~a~~~la~~~~~~g~~~~A~~ 839 (967)
...|..+...|...|++++|.+.|++..+.+ ....+..+...|.+.|++++|.+
T Consensus 649 -----------------------~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~ 705 (1060)
T PLN03218 649 -----------------------EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705 (1060)
T ss_pred -----------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 1356666677777777777777777777633 22367777777777777777777
Q ss_pred HHHHHHHHc-cCCHHHHHHHH----ccCChHHHHHHHHHhhcc--CCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 002100 840 EMTKLIEKA-RNNASAYEKRS----EYCDRDMAKSDLSMATQL--DPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFK 912 (967)
Q Consensus 840 ~~~~al~~~-p~~~~~~~~~~----~~~~~~~A~~~l~~al~l--~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~ 912 (967)
.|++..+.. ..+...|..+- ..|+.++|+..|++..+. .|+ ...|..+-..+.+.|++++|...+.++++..
T Consensus 706 lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 706 LYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 777765532 12344444443 237777777777765543 343 4555666677777788888888888777654
Q ss_pred C
Q 002100 913 P 913 (967)
Q Consensus 913 p 913 (967)
.
T Consensus 785 i 785 (1060)
T PLN03218 785 I 785 (1060)
T ss_pred C
Confidence 3
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.75 E-value=3.3e-16 Score=185.63 Aligned_cols=269 Identities=12% Similarity=-0.006 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHh---cCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchH
Q 002100 588 CLELRAWISIAL---EDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSL 664 (967)
Q Consensus 588 ~~~~la~~~~~~---g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al 664 (967)
.++++|..+... +++++|+..|+++++++|++..++ ..++.++...+.+... ....+...|+
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~------~~La~~~~~~~~~g~~---------~~~~~~~~A~ 324 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPY------CALAECYLSMAQMGIF---------DKQNAMIKAK 324 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHH------HHHHHHHHHHHHcCCc---------ccchHHHHHH
Confidence 455566554433 457889999999999999988887 4445554433221000 0000112348
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccc
Q 002100 665 AVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRS 744 (967)
Q Consensus 665 ~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 744 (967)
..++++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.
T Consensus 325 ~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~ 404 (553)
T PRK12370 325 EHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT 404 (553)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred hHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc---CcHHHH
Q 002100 745 FEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI---KHTRAH 821 (967)
Q Consensus 745 ~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~---~~~~a~ 821 (967)
+. .++..++.++...|++++|+..++++++. +.+.++
T Consensus 405 ~~----------------------------------------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~ 444 (553)
T PRK12370 405 RA----------------------------------------AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILL 444 (553)
T ss_pred Ch----------------------------------------hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHH
Confidence 55 34444555667788899999999988863 344578
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHH
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEA 901 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA 901 (967)
..+|.++..+|++++|...+.++....|. ...++..++.+|...|+ +|
T Consensus 445 ~~la~~l~~~G~~~eA~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~g~--~a 492 (553)
T PRK12370 445 SMQVMFLSLKGKHELARKLTKEISTQEIT------------------------------GLIAVNLLYAEYCQNSE--RA 492 (553)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhccch------------------------------hHHHHHHHHHHHhccHH--HH
Confidence 88899998899988888888776655554 33444445555555552 55
Q ss_pred HHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 902 IAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCL 944 (967)
Q Consensus 902 i~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 944 (967)
...+++.++.... +.-....+.+|.-.|+.+.|... +++.+.
T Consensus 493 ~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 493 LPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 5555554433222 11122255666666666666655 555443
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=2.8e-15 Score=170.40 Aligned_cols=305 Identities=11% Similarity=0.099 Sum_probs=230.9
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhC--chhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhc
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAG--HIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLY 532 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~--~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y 532 (967)
.++...+..|...+..|+|++|++...++-+.. |.-.....+++...+|+
T Consensus 82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~---------------------------- 133 (398)
T PRK10747 82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGD---------------------------- 133 (398)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCC----------------------------
Confidence 456667788999999999999998888877653 22222222333333333
Q ss_pred CChHHHHHHHHHhHhhCCCCchh-HHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHH
Q 002100 533 CSGKEKMMDLNTATELDPTLSYP-YKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVR 610 (967)
Q Consensus 533 ~~~~~A~~~~~~al~l~P~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~ 610 (967)
.+.|...|.++.+.+|++..+ ....+.++...|++++|+..++++++.+| ++.++..++.+|...|++++|++.+.
T Consensus 134 --~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~ 211 (398)
T PRK10747 134 --EARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILP 211 (398)
T ss_pred --HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 388888899999988887544 34558999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 002100 611 ALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLR 690 (967)
Q Consensus 611 ~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~ 690 (967)
++.+..+.++............+++....++-+ + ......++..-+..|+++.+....+..+..
T Consensus 212 ~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~-~---------------~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~ 275 (398)
T PRK10747 212 SMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG-S---------------EGLKRWWKNQSRKTRHQVALQVAMAEHLIE 275 (398)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC-H---------------HHHHHHHHhCCHHHhCCHHHHHHHHHHHHH
Confidence 999887665444321110001111111111100 0 111233333334457789999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHH
Q 002100 691 LNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQ 770 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~ 770 (967)
.|+.++|...++++++..| ++......+.+ ..++.+++++.+++.++.+|+++
T Consensus 276 ~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~------------------------ 328 (398)
T PRK10747 276 CDDHDTAQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTP------------------------ 328 (398)
T ss_pred CCCHHHHHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCH------------------------
Confidence 9999999999999999544 45544444444 44899999999999999999776
Q ss_pred HHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 002100 771 LLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR-AHQGLARVYHLKNQRKAAYDEMTKLIEKA 848 (967)
Q Consensus 771 ~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~-a~~~la~~~~~~g~~~~A~~~~~~al~~~ 848 (967)
..+..+|.++...+++++|.++|+++++..|.. .+..++.++..+|+.++|..+|++++...
T Consensus 329 ----------------~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 329 ----------------LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred ----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 788899999999999999999999999987776 56899999999999999999999998754
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.74 E-value=5.9e-16 Score=168.50 Aligned_cols=221 Identities=14% Similarity=0.102 Sum_probs=175.6
Q ss_pred cCHHHHHHHHHHHHhcC---Cc-hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHH
Q 002100 692 NSQKAAMRSLRLARNYS---TS-EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAY 767 (967)
Q Consensus 692 g~~~~A~~~l~~al~~~---p~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~ 767 (967)
+..+.++..+.+++... |. .+..++.+|.++...|++++|+..|+++++++|++.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~--------------------- 98 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA--------------------- 98 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH---------------------
Confidence 46788999999999643 33 367899999999999999999999999999999776
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002100 768 VIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH--TRAHQGLARVYHLKNQRKAAYDEMTKLI 845 (967)
Q Consensus 768 a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~al 845 (967)
.+|+++|.++...|++++|+..|+++++++| ..++.++|.++...|++++|++.|++++
T Consensus 99 -------------------~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al 159 (296)
T PRK11189 99 -------------------DAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFY 159 (296)
T ss_pred -------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999555 5699999999999999999999999999
Q ss_pred HHccCCHH--HHHHHH-ccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHH--HHHHHHHHH----hcCCC-h
Q 002100 846 EKARNNAS--AYEKRS-EYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAE--AIAELSRAI----AFKPD-L 915 (967)
Q Consensus 846 ~~~p~~~~--~~~~~~-~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e--Ai~~~~kal----~~~p~-~ 915 (967)
+.+|+++. .|.... ..++.++|+..|.+++...+..... .+.++...|+..+ +++.+.+.+ ++.|. .
T Consensus 160 ~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~---~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (296)
T PRK11189 160 QDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG---WNIVEFYLGKISEETLMERLKAGATDNTELAERLC 236 (296)
T ss_pred HhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH---HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99999874 222222 2378999999998777554333222 3455555666543 343333333 33444 3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CchhHHHHH
Q 002100 916 QLLHLRAAFHDSMGDHLHTQRDCEAALCLDP-NHTDTLELY 955 (967)
Q Consensus 916 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~~l~l~ 955 (967)
++|+++|.++..+|++++|+..|++|++.+| ++.+..-.+
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~ 277 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYAL 277 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 5899999999999999999999999999996 665554433
No 65
>PLN03077 Protein ECB2; Provisional
Probab=99.73 E-value=8.8e-14 Score=174.87 Aligned_cols=185 Identities=9% Similarity=-0.015 Sum_probs=131.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCC
Q 002100 682 FRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLN 761 (967)
Q Consensus 682 ~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~ 761 (967)
..+-..|.+.|+.++|...|+.. +.+..+|..+...|...|+.++|++.|++..+...
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~------------------ 585 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV------------------ 585 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------------
Confidence 34445555555555555555543 23344555555555555555555555555443211
Q ss_pred CCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc---cCcH-HHHHHHHHHHHHhCCHHHH
Q 002100 762 PESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN---IKHT-RAHQGLARVYHLKNQRKAA 837 (967)
Q Consensus 762 ~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~---~~~~-~a~~~la~~~~~~g~~~~A 837 (967)
. .+...|..+-..+...|++++|..+|+...+ ..|. ..+..+..++.+.|++++|
T Consensus 586 --------------------~-Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 586 --------------------N-PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred --------------------C-CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 1 1123566676788999999999999999884 3343 3788899999999999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHH----ccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 002100 838 YDEMTKLIEKARNNASAYEKRS----EYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAF 911 (967)
Q Consensus 838 ~~~~~~al~~~p~~~~~~~~~~----~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~ 911 (967)
.+.+++. ...|+ ...|..+- ..++.+.+....+++++++|+++..|..++.+|...|++++|.+..+...+.
T Consensus 645 ~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 645 YNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 9999875 23444 44444433 2388999999999999999999999999999999999999999999888754
No 66
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.73 E-value=2e-17 Score=179.71 Aligned_cols=252 Identities=19% Similarity=0.139 Sum_probs=112.1
Q ss_pred hhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 002100 633 ETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN--DPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS 710 (967)
Q Consensus 633 ~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~ 710 (967)
+.++...+++++| +.++.+.+.. .|.++..|..+|.+....++++.|+..|++.+..++.
T Consensus 15 A~~~~~~~~~~~A------------------l~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~ 76 (280)
T PF13429_consen 15 ARLLYQRGDYEKA------------------LEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccc------------------ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5556666666666 6666544433 3666666777777777777777777777777777777
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHH
Q 002100 711 EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALN 790 (967)
Q Consensus 711 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~ 790 (967)
++..+..++.+ ...+++++|+..++++.+..++. ..+.
T Consensus 77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~-----------------------------------------~~l~ 114 (280)
T PF13429_consen 77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP-----------------------------------------RYLL 114 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccc-ccccccccccccccccccccccc-----------------------------------------chhh
Confidence 66666666666 56677777777776666444321 3455
Q ss_pred HhHHHHHhcccHHHHHHHHHHHhcc----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc----cC
Q 002100 791 NLGSVYVDCEKLDLAADCYMNALNI----KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE----YC 862 (967)
Q Consensus 791 ~lg~~~~~~g~~~~A~~~~~~Al~~----~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~ 862 (967)
....++...++++++...++++... .....+..+|.++.+.|++++|+..|+++++.+|++..+...++. .+
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMG 194 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Confidence 5667788999999999999997652 234588899999999999999999999999999999998888873 28
Q ss_pred ChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 863 DRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAA 941 (967)
Q Consensus 863 ~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~a 941 (967)
+.+++...++...+..|+++..+..+|.++...|++++|+..|+++++.+|+ +..+..+|.++...|+.++|...++++
T Consensus 195 ~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 195 DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8888888888888888999999999999999999999999999999999997 568889999999999999999999998
Q ss_pred Hhc
Q 002100 942 LCL 944 (967)
Q Consensus 942 l~~ 944 (967)
+..
T Consensus 275 ~~~ 277 (280)
T PF13429_consen 275 LRL 277 (280)
T ss_dssp ---
T ss_pred ccc
Confidence 753
No 67
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=2.4e-17 Score=179.00 Aligned_cols=230 Identities=17% Similarity=0.143 Sum_probs=58.5
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhC--c--hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHH
Q 002100 462 QLGVVMLEREEYKDAQNWFKAAVEAG--H--IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKE 537 (967)
Q Consensus 462 ~lG~~~~~~g~y~~A~~~f~~al~~~--~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~ 537 (967)
.++.+++..|++++|.+.+++.+... + ...+..++.+....++++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~------------------------------ 62 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDE------------------------------ 62 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc------------------------------
Confidence 56889999999999999997655442 3 3334444555545555544
Q ss_pred HHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Q 002100 538 KMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLD- 616 (967)
Q Consensus 538 A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~- 616 (967)
|+..|++++..++.++..+..++.+ ...+++++|+..+.++.+..+++..+.....++...++++++...++++....
T Consensus 63 A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 141 (280)
T PF13429_consen 63 AIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA 141 (280)
T ss_dssp --------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-
T ss_pred ccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC
Confidence 4444444444444444444444444 44455555555555444444444444444444555555555555555444332
Q ss_pred -CCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHH
Q 002100 617 -PSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQK 695 (967)
Q Consensus 617 -p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~ 695 (967)
|.++..+ ...+.++...|++++| +..++++++.+|+++.+...++.++...|+++
T Consensus 142 ~~~~~~~~------~~~a~~~~~~G~~~~A------------------~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~ 197 (280)
T PF13429_consen 142 APDSARFW------LALAEIYEQLGDPDKA------------------LRDYRKALELDPDDPDARNALAWLLIDMGDYD 197 (280)
T ss_dssp --T-HHHH------HHHHHHHHHCCHHHHH------------------HHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHH
T ss_pred CCCCHHHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHHcCCCCHHHHHHHHHHHHHCCChH
Confidence 2333333 3344444444555444 45555555555555555555555555555555
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 696 AAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 696 ~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
++...++...+..|.++..+..+|.++..+|++++|+..|++++..+|+++
T Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 198 EAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 544444444444444444444555555555555555555555555444333
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=2.2e-16 Score=159.68 Aligned_cols=242 Identities=15% Similarity=0.077 Sum_probs=212.9
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhh
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETL 635 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l 635 (967)
...+|.+|++.|-+.+|.+.++..++..|.++.+.+++.+|....+...|+..|.+.++..|.+.... .-.+.+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l------~g~ARi 299 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYL------LGQARI 299 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhh------hhhHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999988877 556788
Q ss_pred HHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHH
Q 002100 636 QPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKL 715 (967)
Q Consensus 636 ~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~ 715 (967)
+..+++++.| ++.|+.+++.+|.+..+.--+|.-|+.-++++-|++.|++.++..-.+++.+
T Consensus 300 ~eam~~~~~a------------------~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf 361 (478)
T KOG1129|consen 300 HEAMEQQEDA------------------LQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELF 361 (478)
T ss_pred HHHHHhHHHH------------------HHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHH
Confidence 9999999888 8999999999999988888888888889999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHH
Q 002100 716 VYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSV 795 (967)
Q Consensus 716 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~ 795 (967)
.++|.+.+..++++-++..|++++....+.. ..++.|+|+|.+
T Consensus 362 ~NigLCC~yaqQ~D~~L~sf~RAlstat~~~-------------------------------------~aaDvWYNlg~v 404 (478)
T KOG1129|consen 362 CNIGLCCLYAQQIDLVLPSFQRALSTATQPG-------------------------------------QAADVWYNLGFV 404 (478)
T ss_pred hhHHHHHHhhcchhhhHHHHHHHHhhccCcc-------------------------------------hhhhhhhcccee
Confidence 9999999999999999999999986654222 445789999999
Q ss_pred HHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHH
Q 002100 796 YVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKR 858 (967)
Q Consensus 796 ~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 858 (967)
....|++.-|..+|+-++. .+|..++.+||.+..+.|+.++|..+++.+-...|.-.+...++
T Consensus 405 aV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 405 AVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred EEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 9999999999999999998 44556999999999999999999999999988888755544443
No 69
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.71 E-value=7.2e-13 Score=164.41 Aligned_cols=469 Identities=9% Similarity=-0.037 Sum_probs=297.1
Q ss_pred cccchHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHH
Q 002100 434 MKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMN 513 (967)
Q Consensus 434 ~~~~~~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~ 513 (967)
.+...+..+++.+.+.....+. ...+..+-..+...|..++|...|+.... .....+..+-..+.+.|+.+.|..++.
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~-~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~e~A~~lf~ 461 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMD-KIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGALRVLR 461 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCch-HHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3445555555555443222222 22233344556677888888888876654 234555566677788888888888888
Q ss_pred HHHhcc-Cc-------chhHHHHHhhcCChHHHHHHHHHhHhhCCC-CchhHHHHHHHHHhcCcHHHHHHHHHHHhc--c
Q 002100 514 SLISDY-TP-------VGWMYQERSLYCSGKEKMMDLNTATELDPT-LSYPYKYRAILLVEENKLAAAITEINRIIG--F 582 (967)
Q Consensus 514 ~~i~~~-~~-------~g~~~~~~~~y~~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~ 582 (967)
.+.+.- .+ +-.+|.+.+ +.++|...|++..+.... +...|..+...|.+.|++++|++.|++... .
T Consensus 462 ~M~~~Gl~pD~~tynsLI~~y~k~G---~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv 538 (1060)
T PLN03218 462 LVQEAGLKADCKLYTTLISTCAKSG---KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCc---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 877622 11 222333333 558888888888765432 567788888888888888888888888754 4
Q ss_pred CCChhHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccc
Q 002100 583 KVSPDCLELRAWISIALEDYDGALRDVRALLT----LDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSV 658 (967)
Q Consensus 583 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~----l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~ 658 (967)
.|+...|..+...|.+.|++++|.+.|.+... +.|+. ..+ ..+-..+...+++++|
T Consensus 539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~-vTy------naLI~ay~k~G~ldeA------------- 598 (1060)
T PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH-ITV------GALMKACANAGQVDRA------------- 598 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-HHH------HHHHHHHHHCCCHHHH-------------
Confidence 45778888888888888888888888888865 24553 233 2333456677777777
Q ss_pred cccchHHHHHHHHhcC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHcCChHHHHHHH
Q 002100 659 DDIGSLAVVHHMLAND-PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNY--STSEHEKLVYEGWILYDTGHREEALAKA 735 (967)
Q Consensus 659 d~~~al~~~~~~l~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~~ 735 (967)
+..|+++.+.+ +.+...|..+...|.+.|++++|+..|++..+. .|+ ...+..+...+.+.|++++|.+.+
T Consensus 599 -----~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 599 -----KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred -----HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 77788777765 445667778888888888888888888887765 454 456777888888888888888888
Q ss_pred HHHHhcc--cchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHh
Q 002100 736 EESISIQ--RSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNAL 813 (967)
Q Consensus 736 ~~al~~~--p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 813 (967)
++..+.. |+...+. .+.+.+...+..+.+..+++++.+.. .......|+.+...|.+.|++++|++.|++..
T Consensus 673 ~eM~k~G~~pd~~tyn----sLI~ay~k~G~~eeA~~lf~eM~~~g--~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 673 QDARKQGIKLGTVSYS----SLMGACSNAKNWKKALELYEDIKSIK--LRPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHcCCCCCHHHHH----HHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8887643 3322111 22233334556677777777765431 12234578888888888888999988888876
Q ss_pred cc--CcH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC-CHHHHHHH-Hcc--------------------------C
Q 002100 814 NI--KHT-RAHQGLARVYHLKNQRKAAYDEMTKLIEKARN-NASAYEKR-SEY--------------------------C 862 (967)
Q Consensus 814 ~~--~~~-~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~-~~~--------------------------~ 862 (967)
.. .|. ..+..+-..+.+.|++++|.+.+.++++.... +...|..+ +.+ .
T Consensus 747 ~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~ 826 (1060)
T PLN03218 747 RLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENK 826 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccc
Confidence 62 233 36677778888888888888888888775432 22222221 100 1
Q ss_pred ChHHHHHHHHHhhcc--CCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHcCCh-HHHHH
Q 002100 863 DRDMAKSDLSMATQL--DPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD---LQLLHLRAAFHDSMGDH-LHTQR 936 (967)
Q Consensus 863 ~~~~A~~~l~~al~l--~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~---~~~~~~~a~~~~~~g~~-~~A~~ 936 (967)
..++|+..|++.++. .|+.. .+..+-.++...+....+...++... ..|. ...|..+-..+ +++ ++|..
T Consensus 827 w~~~Al~lf~eM~~~Gi~Pd~~-T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~---~~~~~~A~~ 901 (1060)
T PLN03218 827 WTSWALMVYRETISAGTLPTME-VLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGF---GEYDPRAFS 901 (1060)
T ss_pred hHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhh---ccChHHHHH
Confidence 134566666666553 34433 23333245566666666666655432 2332 12222222222 333 57888
Q ss_pred HHHHHHhc
Q 002100 937 DCEAALCL 944 (967)
Q Consensus 937 ~~~~al~~ 944 (967)
.++.+...
T Consensus 902 l~~em~~~ 909 (1060)
T PLN03218 902 LLEEAASL 909 (1060)
T ss_pred HHHHHHHc
Confidence 88777654
No 70
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=7.7e-16 Score=168.23 Aligned_cols=247 Identities=14% Similarity=0.107 Sum_probs=201.4
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
+..+|.-.|+.|++.+|.++++|..+|.+..+.++-..||..+.++++++| +.+++..||..|.+.|.-.+|++.+.+-
T Consensus 300 ~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~W 379 (579)
T KOG1125|consen 300 DLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKW 379 (579)
T ss_pred CchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 448999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCC--CChHHHHHHHHHHHH
Q 002100 613 LTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDP--GKSLLRFRQSLLLLR 690 (967)
Q Consensus 613 l~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p--~~~~~~~~~g~~~~~ 690 (967)
|...|.+......-. ... ....+.+....-+ ......|..+....| .++.+...+|.+|..
T Consensus 380 i~~~p~y~~l~~a~~--~~~---~~~~~s~~~~~~l------------~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 380 IRNKPKYVHLVSAGE--NED---FENTKSFLDSSHL------------AHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred HHhCccchhccccCc--ccc---ccCCcCCCCHHHH------------HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 999887554331000 000 0000001111000 011455666677777 688999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHH
Q 002100 691 LNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQ 770 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~ 770 (967)
.++|++|+.+|+.|+...|++...|..+|.++-...+.++|+..|.+|+++.|.+.
T Consensus 443 s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV------------------------ 498 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYV------------------------ 498 (579)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCee------------------------
Confidence 99999999999999999999999999999999999999999999999999999877
Q ss_pred HHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH------------HHHHHHHHHHHHhCCHHHH
Q 002100 771 LLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT------------RAHQGLARVYHLKNQRKAA 837 (967)
Q Consensus 771 ~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~------------~a~~~la~~~~~~g~~~~A 837 (967)
.+.+|||..++.+|.|++|+++|-.||.+... .+|..|=.++...++.+-+
T Consensus 499 ----------------R~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 499 ----------------RVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred ----------------eeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 78999999999999999999999999983221 2555555555666655543
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.70 E-value=4.2e-15 Score=145.07 Aligned_cols=206 Identities=17% Similarity=0.089 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhc
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADS 758 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~ 758 (967)
.++..+|.-|++.|++..|...++++++++|++..+|..++.+|...|+.+.|.+.|++|++++|++.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G------------ 103 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG------------ 103 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc------------
Confidence 57788999999999999999999999999999999999999999999999999999999999999665
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhCCH
Q 002100 759 SLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN----IKHTRAHQGLARVYHLKNQR 834 (967)
Q Consensus 759 ~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----~~~~~a~~~la~~~~~~g~~ 834 (967)
++++|.|..+..+|++++|...|++|+. ..+.+++.++|.+..+.|+.
T Consensus 104 ----------------------------dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~ 155 (250)
T COG3063 104 ----------------------------DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQF 155 (250)
T ss_pred ----------------------------chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCc
Confidence 8999999999999999999999999999 34566999999999999998
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 835 KAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 835 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
+.|.++|+++++. +|+.+.+...++...++.|+|-.|..++++.....+-
T Consensus 156 ~~A~~~l~raL~~------------------------------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~ 205 (250)
T COG3063 156 DQAEEYLKRALEL------------------------------DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGA 205 (250)
T ss_pred hhHHHHHHHHHHh------------------------------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccc
Confidence 8888877766655 5566777888999999999999999999998876554
Q ss_pred -hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHH
Q 002100 915 -LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLEL 954 (967)
Q Consensus 915 -~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l 954 (967)
-+.+.+...+-...||.+.|-++=.+.-..+|+.++.-..
T Consensus 206 ~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f 246 (250)
T COG3063 206 QAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTF 246 (250)
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhH
Confidence 4577777888999999999999999999999998876543
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=3.8e-16 Score=158.03 Aligned_cols=234 Identities=12% Similarity=0.055 Sum_probs=204.5
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHhCc-hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChH
Q 002100 458 LAFHQLGVVMLEREEYKDAQNWFKAAVEAGH-IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGK 536 (967)
Q Consensus 458 ~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~-~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~ 536 (967)
..-.++|++|+..|-+.+|.+-|+.+++..+ ......|+++|.+..+. .
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP------------------------------~ 273 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQP------------------------------E 273 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccH------------------------------H
Confidence 3446799999999999999999999999855 77778888877554444 6
Q ss_pred HHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 537 EKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 537 ~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 615 (967)
.|+..|.+.++..|.+...+...|.++..++++++|.+.|+.+++.+| +.++....|.-|+--++.+-|+.+|+++|++
T Consensus 274 ~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm 353 (478)
T KOG1129|consen 274 RALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM 353 (478)
T ss_pred HHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHh
Confidence 777777777777888888888889999999999999999999999999 8888888888888899999999999999999
Q ss_pred CCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCC---CChHHHHHHHHHHHHhc
Q 002100 616 DPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDP---GKSLLRFRQSLLLLRLN 692 (967)
Q Consensus 616 ~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p---~~~~~~~~~g~~~~~~g 692 (967)
.-.++..+ .+++++....++++-+ +..|++++.... ...++|+++|.+....|
T Consensus 354 G~~speLf------~NigLCC~yaqQ~D~~------------------L~sf~RAlstat~~~~aaDvWYNlg~vaV~iG 409 (478)
T KOG1129|consen 354 GAQSPELF------CNIGLCCLYAQQIDLV------------------LPSFQRALSTATQPGQAADVWYNLGFVAVTIG 409 (478)
T ss_pred cCCChHHH------hhHHHHHHhhcchhhh------------------HHHHHHHHhhccCcchhhhhhhccceeEEecc
Confidence 88888888 7788888888888888 888888887543 34679999999999999
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccch
Q 002100 693 SQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSF 745 (967)
Q Consensus 693 ~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 745 (967)
++.-|.++|+-++..++++.++++++|.+-.+.|+.++|..++..+-...|+.
T Consensus 410 D~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 410 DFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred chHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 99999999999999999999999999999999999999999999999999843
No 73
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.70 E-value=1.8e-17 Score=152.81 Aligned_cols=105 Identities=28% Similarity=0.396 Sum_probs=93.0
Q ss_pred cccCCCCcccEEEEEc-CeEEEehhHHHhccCHHHHHhhcCC-CCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCC
Q 002100 248 ECSTSDEDWDMSFCIG-NDEIRCVRYKIASLSRPFRTMLYGG-FIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFD 325 (967)
Q Consensus 248 ~~~~~~~~~Dv~~~v~-~~~~~~hr~vLa~~S~~F~~~~~~~-~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~ 325 (967)
++++++.++||+|.|+ +++|+|||.||+++|+||+.||.+. +.+....+|.+++ +++++|+.+++|+|+|++ .++
T Consensus 3 ~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~l~~~Y~~~~-~~~ 79 (111)
T PF00651_consen 3 DLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPD--VSPEAFEAFLEYMYTGEI-EIN 79 (111)
T ss_dssp HHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETT--SCHHHHHHHHHHHHHSEE-EEE
T ss_pred HHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccccc--ccccccccccccccCCcc-cCC
Confidence 3455678999999999 8999999999999999999999998 6777767889976 999999999999999999 777
Q ss_pred -HHHHHHHHHHhchhChHHHHHHHHHHHHhh
Q 002100 326 -PRLVLELLSFANRFCCEELKSACDSYLASM 355 (967)
Q Consensus 326 -~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 355 (967)
.+++.+++.+|++|+++.|+..|..+|.+.
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 899999999999999999999999999764
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.69 E-value=2.6e-13 Score=149.96 Aligned_cols=433 Identities=17% Similarity=0.097 Sum_probs=235.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhC--chhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChH
Q 002100 459 AFHQLGVVMLEREEYKDAQNWFKAAVEAG--HIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGK 536 (967)
Q Consensus 459 a~~~lG~~~~~~g~y~~A~~~f~~al~~~--~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~ 536 (967)
++|....-.++.++|...++..+..|+-. |..+++..+......|+.+
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~------------------------------ 58 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKE------------------------------ 58 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchH------------------------------
Confidence 44555555566677777777777777652 3555555555555555554
Q ss_pred HHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 537 EKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 537 ~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 615 (967)
+|......++..++.....|..+|.++...++|++|+++|..|+.++| |...+.-++.+..++++++.....-.+.+++
T Consensus 59 ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql 138 (700)
T KOG1156|consen 59 EAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL 138 (700)
T ss_pred HHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 444455555555555555555555555555556666666666665555 5555555555555556665555555555555
Q ss_pred CCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh-----HHHHHHHHHHHH
Q 002100 616 DPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS-----LLRFRQSLLLLR 690 (967)
Q Consensus 616 ~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~-----~~~~~~g~~~~~ 690 (967)
.|.+...| .-.+..+...++|..| .+-++.|.+.....|... .....+...+..
T Consensus 139 ~~~~ra~w------~~~Avs~~L~g~y~~A---------------~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E 197 (700)
T KOG1156|consen 139 RPSQRASW------IGFAVAQHLLGEYKMA---------------LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE 197 (700)
T ss_pred hhhhHHHH------HHHHHHHHHHHHHHHH---------------HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 55555555 3334455555555555 111222222222112211 122223333444
Q ss_pred hcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHH
Q 002100 691 LNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQ 770 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~ 770 (967)
.|.+++|.+.+..--..--+........|.++++++++++|...|...+..+|++..++.......-.. .........
T Consensus 198 ~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~--~d~~~~lk~ 275 (700)
T KOG1156|consen 198 AGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKI--KDMLEALKA 275 (700)
T ss_pred cccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHH--hhhHHHHHH
Confidence 444444444333321111111222233455555555555555555555555555444432222111000 000000001
Q ss_pred HHHHHhcCCCCC---------------------------Cch--HHHHHHhHHHHHhccc---HHHHHHHHHHHhccC--
Q 002100 771 LLEEALRCPSDG---------------------------LRK--GQALNNLGSVYVDCEK---LDLAADCYMNALNIK-- 816 (967)
Q Consensus 771 ~le~~~~~~~~~---------------------------~~~--~~a~~~lg~~~~~~g~---~~~A~~~~~~Al~~~-- 816 (967)
++....+.+... ..+ ......+-..|..-.+ .++=+..|...+...
T Consensus 276 ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~ 355 (700)
T KOG1156|consen 276 LYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGM 355 (700)
T ss_pred HHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccC
Confidence 111111111100 000 0111222222221111 122222333333311
Q ss_pred ----------cHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccC
Q 002100 817 ----------HTR----AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLD 878 (967)
Q Consensus 817 ----------~~~----a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~ 878 (967)
++. .++.++.-+...|+++.|..+++.+|..-|...+.|...+. .|+.++|...++.+.++|
T Consensus 356 f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 356 FNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred CCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 222 45668889999999999999999999999999999987774 399999999999999999
Q ss_pred CCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-----h--H-HHHH--HHHHHHHcCChHHHHHHHHHHHhc
Q 002100 879 PMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-----L--Q-LLHL--RAAFHDSMGDHLHTQRDCEAALCL 944 (967)
Q Consensus 879 p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-----~--~-~~~~--~a~~~~~~g~~~~A~~~~~~al~~ 944 (967)
-.+..+-..-|.-..+.++.++|.+.+.+.-...-+ . + .|+. -|.+|.++|++-.|++-|..+-..
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 888887777888888999999999988877654422 1 1 4444 488999999999998877665433
No 75
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=1.2e-11 Score=131.50 Aligned_cols=470 Identities=11% Similarity=0.028 Sum_probs=325.3
Q ss_pred chHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchh--HHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHh
Q 002100 453 SWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIY--SLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERS 530 (967)
Q Consensus 453 ~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~--a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~ 530 (967)
+.-....|...|.--..++++..|...|++||..+..+ .+...+..-.+......|..++++++...|..-....+.-
T Consensus 69 nR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 69 NRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH
Confidence 33445567778888889999999999999999997633 4445566666777777999999999998876543332211
Q ss_pred ----hcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHH
Q 002100 531 ----LYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGAL 606 (967)
Q Consensus 531 ----~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~ 606 (967)
..++..-|.+.|++-++..|+ ..+|...-..-.+.+.++.|...|++.+-..|....+...|..-...|+...|.
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 223668999999999999996 457777777778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHH
Q 002100 607 RDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSL 686 (967)
Q Consensus 607 ~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~ 686 (967)
..|.+|++.-.++.....-. ...+..-...+.++.| -..|.-++..-|.+..--...+.
T Consensus 228 ~VyerAie~~~~d~~~e~lf---vaFA~fEe~qkE~ERa------------------r~iykyAld~~pk~raeeL~k~~ 286 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILF---VAFAEFEERQKEYERA------------------RFIYKYALDHIPKGRAEELYKKY 286 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHH---HHHHHHHHHHHHHHHH------------------HHHHHHHHHhcCcccHHHHHHHH
Confidence 99999998766544333100 1112222233334444 44556666666655221111122
Q ss_pred HH--HHhcC---HHHHHH-----HHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccch-HHHH------
Q 002100 687 LL--LRLNS---QKAAMR-----SLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSF-EAFF------ 749 (967)
Q Consensus 687 ~~--~~~g~---~~~A~~-----~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~------ 749 (967)
.. -+-|+ .+.++- .|+..+..+|.+.++|+.+-.+....|+.+.-.+.|++|+..-|-. ...+
T Consensus 287 ~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIY 366 (677)
T KOG1915|consen 287 TAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIY 366 (677)
T ss_pred HHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHH
Confidence 21 12233 223332 4566677777777777777777777777777777777777665521 1111
Q ss_pred -HHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCC-CchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH-HHHHHHH
Q 002100 750 -LKAYALADSSLNPESSAYVIQLLEEALRCPSDG-LRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR-AHQGLAR 826 (967)
Q Consensus 750 -~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~-~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~-a~~~la~ 826 (967)
...|++-.. +..+..+.+.+++...++..+.. ..-+..|...+.....+.+...|.+.+-.|+...|.+ ...+.-.
T Consensus 367 LWinYalyeE-le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 367 LWINYALYEE-LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIE 445 (677)
T ss_pred HHHHHHHHHH-HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHH
Confidence 111222111 22344555566666666644433 3455677788888889999999999999999977765 6666777
Q ss_pred HHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHH--HHHhCCCHHH
Q 002100 827 VYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAA--VLMDDHKEAE 900 (967)
Q Consensus 827 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~--~~~~~g~~~e 900 (967)
+-.++++++.....|.+-|+..|.+..+|...+++ |+.+.|...|+-|+.....+...+...+. .-...|.++.
T Consensus 446 lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ek 525 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEK 525 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHH
Confidence 88889999999999999999999999999988854 99999999999998876555444443333 3345689999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHH-----HcC-----------ChHHHHHHHHHHHhcC
Q 002100 901 AIAELSRAIAFKPDLQLLHLRAAFHD-----SMG-----------DHLHTQRDCEAALCLD 945 (967)
Q Consensus 901 Ai~~~~kal~~~p~~~~~~~~a~~~~-----~~g-----------~~~~A~~~~~~al~~~ 945 (967)
|...|++.++..+...++...|.+-. ..+ +...|...|++|....
T Consensus 526 aR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~ 586 (677)
T KOG1915|consen 526 ARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYL 586 (677)
T ss_pred HHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHH
Confidence 99999999998887666666555544 444 5677888888876543
No 76
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.69 E-value=1.5e-16 Score=164.88 Aligned_cols=181 Identities=16% Similarity=0.073 Sum_probs=161.1
Q ss_pred cccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccce--EEeccCCCCHHHHHHHHHhHcCCCCCC
Q 002100 246 DEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREK--VNFSQNGISVEAMRAAEEFSRTKMLDS 323 (967)
Q Consensus 246 ~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~--i~~~~~~~~~~~~~~~l~~~Yt~~~~~ 323 (967)
...++.+++-|||.+.+=|++.+.||..| ..|+||++||+|.|+|++++. ++|+|+.|+..+|..++.-+|.+++ +
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEv-e 137 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEV-E 137 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhe-e
Confidence 34455678889999999999999999999 678999999999999999985 5678889999999999999999999 9
Q ss_pred CCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhh--------hcCCc
Q 002100 324 FDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELP--------CSMQN 395 (967)
Q Consensus 324 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~--------~~l~~ 395 (967)
|..++|..+|++|..+++++|.+.|.+.+.+.++ +++++.+++.+-.|+...+++.|++|+..|+- ..++.
T Consensus 138 I~l~dv~gvlAaA~~lqldgl~qrC~evMie~ls-pkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~ 216 (488)
T KOG4682|consen 138 IKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLS-PKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISI 216 (488)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC-hhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCH
Confidence 9999999999999999999999999999999999 99999999999999999999999999999987 45666
Q ss_pred hhHhhhhccchHHHHHHhhcc-hHHHHHHHHHHhccCccc
Q 002100 396 PNVMRIFCSAEARERLAMVGH-ASFVLYYFLSQIGMEEDM 434 (967)
Q Consensus 396 ~~~~~ll~s~~~~~r~~~~~~-e~~~l~~~l~~l~~~~~~ 434 (967)
+-+..++.++++- +-+ |-.+|..+..|+-+....
T Consensus 217 ~Lm~~ll~SpnLf-----vmq~EfdLyttlk~WmfLql~p 251 (488)
T KOG4682|consen 217 NLMKQLLGSPNLF-----VMQVEFDLYTTLKKWMFLQLVP 251 (488)
T ss_pred HHHHHHhCCCCeE-----EEEeeehHHHHHHHHHHhhhcc
Confidence 7777888888877 555 556777788888765433
No 77
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.2e-14 Score=152.28 Aligned_cols=373 Identities=13% Similarity=0.080 Sum_probs=255.2
Q ss_pred chHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhc
Q 002100 453 SWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLY 532 (967)
Q Consensus 453 ~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y 532 (967)
..+.+.-....|..++..++|.+|+..|..|++..|..+..+ .+....+...++|
T Consensus 45 ~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy-------------------------~nRAa~~m~~~~~ 99 (486)
T KOG0550|consen 45 AAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYY-------------------------SNRAATLMMLGRF 99 (486)
T ss_pred HHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhh-------------------------chhHHHHHHHHhH
Confidence 345555667789999999999999999999999988664444 2234455556666
Q ss_pred CChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 533 CSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 533 ~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
++|+-+.++.++++|.....+...+.++...++..+|.+.|+.. .++ ....|+..+++.
T Consensus 100 ---~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~-------~~~-----------~~anal~~~~~~ 158 (486)
T KOG0550|consen 100 ---EEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSK-------QAY-----------KAANALPTLEKL 158 (486)
T ss_pred ---hhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhh-------hhh-----------HHhhhhhhhhcc
Confidence 99999999999999999999999999999988888888777611 111 122233333333
Q ss_pred HHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhc
Q 002100 613 LTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLN 692 (967)
Q Consensus 613 l~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g 692 (967)
+..+...+... ....+.+.++...++++.| +..-...+++++.+..+++.+|.++....
T Consensus 159 ~~s~s~~pac~---~a~~lka~cl~~~~~~~~a------------------~~ea~~ilkld~~n~~al~vrg~~~yy~~ 217 (486)
T KOG0550|consen 159 APSHSREPACF---KAKLLKAECLAFLGDYDEA------------------QSEAIDILKLDATNAEALYVRGLCLYYND 217 (486)
T ss_pred cccccCCchhh---HHHHhhhhhhhhcccchhH------------------HHHHHHHHhcccchhHHHHhccccccccc
Confidence 33322111111 1115666677777777777 56666677777777777777777777777
Q ss_pred CHHHHHHHHHHHHhcCCchh------------HHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCC
Q 002100 693 SQKAAMRSLRLARNYSTSEH------------EKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSL 760 (967)
Q Consensus 693 ~~~~A~~~l~~al~~~p~~~------------~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~ 760 (967)
+.+.|+..|++++.++|+.. +.+...|.-.++.|++.+|.+.|..+|.++|++.
T Consensus 218 ~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~-------------- 283 (486)
T KOG0550|consen 218 NADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK-------------- 283 (486)
T ss_pred chHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc--------------
Confidence 77777777777777777653 3466778888999999999999999999999654
Q ss_pred CCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhCCHHHHH
Q 002100 761 NPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKNQRKAAY 838 (967)
Q Consensus 761 ~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~A~ 838 (967)
...+..|.+++.+....|+..+|+...+.|+++++.+ ++...|.++..+++|++|.
T Consensus 284 ----------------------~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 284 ----------------------KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred ----------------------chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1334678999999999999999999999999999887 8888999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh---
Q 002100 839 DEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL--- 915 (967)
Q Consensus 839 ~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~--- 915 (967)
+.|+++++...+ ......+ .+|...++++-+ ..-|..+|..... .+.+--..+=..+|...|+-
T Consensus 342 ~d~~~a~q~~~s-~e~r~~l------~~A~~aLkkSkR-----kd~ykilGi~~~a-s~~eikkayrk~AL~~Hpd~~ag 408 (486)
T KOG0550|consen 342 EDYEKAMQLEKD-CEIRRTL------REAQLALKKSKR-----KDWYKILGISRNA-SDDEIKKAYRKLALVHHPDKNAG 408 (486)
T ss_pred HHHHHHHhhccc-cchHHHH------HHHHHHHHHhhh-----hhHHHHhhhhhhc-ccchhhhHHHHHHHHhCCCcCcc
Confidence 999999987765 2222221 223333333222 1122223322221 11111112223455566651
Q ss_pred -----H-HHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 916 -----Q-LLHLRAAFHDSMGDHLHTQRDCEAA 941 (967)
Q Consensus 916 -----~-~~~~~a~~~~~~g~~~~A~~~~~~a 941 (967)
+ -....|..|..++|+.++.+...-.
T Consensus 409 sq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 409 SQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred hhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 1 3445788888888888887766544
No 78
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=7.8e-16 Score=168.18 Aligned_cols=227 Identities=14% Similarity=0.101 Sum_probs=173.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCC
Q 002100 681 RFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSL 760 (967)
Q Consensus 681 ~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~ 760 (967)
-|..|..+++.|+..+|+-+|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl-------------- 353 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL-------------- 353 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH--------------
Confidence 356899999999999999999999999999999999999999999999999999999999999776
Q ss_pred CCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHH---------h
Q 002100 761 NPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHL---------K 831 (967)
Q Consensus 761 ~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~---------~ 831 (967)
.++..||..|...|.-.+|..++.+=+...+.+.+...+..-.. .
T Consensus 354 --------------------------eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~ 407 (579)
T KOG1125|consen 354 --------------------------EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDS 407 (579)
T ss_pred --------------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCH
Confidence 67777888888888888888888777665554444333211111 1
Q ss_pred CCHHHHHHHHHHHHHHcc--CCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHH
Q 002100 832 NQRKAAYDEMTKLIEKAR--NNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAEL 905 (967)
Q Consensus 832 g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~ 905 (967)
.....-.+.|-.+....| .+++++..+|.+ ++|++|+.+|+.|+..+|++...|..+|..+....+.++||..|
T Consensus 408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 122333455556666666 577777777732 77888888888888888888888888888888778888888888
Q ss_pred HHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002100 906 SRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPN 947 (967)
Q Consensus 906 ~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~ 947 (967)
++|+++.|.. .+.+++|..+..+|.|++|..+|-.||.+.+.
T Consensus 488 ~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 488 NRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 8888888874 47777888888888888888888888777655
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.68 E-value=2.6e-13 Score=149.97 Aligned_cols=358 Identities=16% Similarity=0.149 Sum_probs=270.4
Q ss_pred HHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHH
Q 002100 528 ERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGAL 606 (967)
Q Consensus 528 ~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~ 606 (967)
+.++| .+.++..+..++.+|...+.+...|..+..+|+-++|......++..++ +..+|..+|.++...++|++|+
T Consensus 19 E~kQY---kkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 19 ETKQY---KKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHH---HhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHH
Confidence 44556 8999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHH
Q 002100 607 RDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSL 686 (967)
Q Consensus 607 ~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~ 686 (967)
++|+.|+.++|+|...+ .-++++..++++|+-. ...-.+.++..|.....|+..+.
T Consensus 96 Kcy~nAl~~~~dN~qil------rDlslLQ~QmRd~~~~------------------~~tr~~LLql~~~~ra~w~~~Av 151 (700)
T KOG1156|consen 96 KCYRNALKIEKDNLQIL------RDLSLLQIQMRDYEGY------------------LETRNQLLQLRPSQRASWIGFAV 151 (700)
T ss_pred HHHHHHHhcCCCcHHHH------HHHHHHHHHHHhhhhH------------------HHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999999999999 7788899998888877 77888999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhcC---Cch-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhc
Q 002100 687 LLLRLNSQKAAMRSLRLARNYS---TSE-----HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADS 758 (967)
Q Consensus 687 ~~~~~g~~~~A~~~l~~al~~~---p~~-----~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~ 758 (967)
.+...|++..|...++...+.. |+. .+.......++...|.+++|++.+..- .+...
T Consensus 152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~---e~~i~------------ 216 (700)
T KOG1156|consen 152 AQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN---EKQIV------------ 216 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh---hhHHH------------
Confidence 9999999999999887776654 332 345566677778888888877766542 22111
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhCCHHH
Q 002100 759 SLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKNQRKA 836 (967)
Q Consensus 759 ~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~ 836 (967)
.+.......+.+++.++++++|+..|...+..+|.+ .+..+-.++.+-.+.-+
T Consensus 217 -------------------------Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~ 271 (700)
T KOG1156|consen 217 -------------------------DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLE 271 (700)
T ss_pred -------------------------HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHH
Confidence 111233446888999999999999999999977765 44445555543333333
Q ss_pred HH-HHHHHHHHHccCC-------------------HHHHHHHH--------------ccCChH------HHHHHHHHhhc
Q 002100 837 AY-DEMTKLIEKARNN-------------------ASAYEKRS--------------EYCDRD------MAKSDLSMATQ 876 (967)
Q Consensus 837 A~-~~~~~al~~~p~~-------------------~~~~~~~~--------------~~~~~~------~A~~~l~~al~ 876 (967)
+. ..|...-+..|.. .+-|.... .+.+.. +-+..|...+.
T Consensus 272 ~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~ 351 (700)
T KOG1156|consen 272 ALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLS 351 (700)
T ss_pred HHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcc
Confidence 44 4444433333320 00111110 112222 11122222222
Q ss_pred cC------------CCC--chHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 877 LD------------PMR--TYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAA 941 (967)
Q Consensus 877 l~------------p~~--~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~a 941 (967)
-. |-. .+.++.++.-+-..|+++.|..+++.||...|. .+.+...|+++.++|+.++|...+++|
T Consensus 352 ~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea 431 (700)
T KOG1156|consen 352 GTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEA 431 (700)
T ss_pred cccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 11 211 245667888999999999999999999999999 678888999999999999999999999
Q ss_pred HhcCCCchhHH
Q 002100 942 LCLDPNHTDTL 952 (967)
Q Consensus 942 l~~~P~~~~~l 952 (967)
-++|-.|.-+.
T Consensus 432 ~elD~aDR~IN 442 (700)
T KOG1156|consen 432 QELDTADRAIN 442 (700)
T ss_pred HhccchhHHHH
Confidence 99997766554
No 80
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.67 E-value=1.1e-14 Score=153.00 Aligned_cols=200 Identities=17% Similarity=0.100 Sum_probs=170.3
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhh
Q 002100 677 KSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALA 756 (967)
Q Consensus 677 ~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la 756 (967)
....++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---------- 99 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG---------- 99 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----------
Confidence 4678889999999999999999999999999999999999999999999999999999999998888555
Q ss_pred hcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC----cHHHHHHHHHHHHHhC
Q 002100 757 DSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK----HTRAHQGLARVYHLKN 832 (967)
Q Consensus 757 ~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~----~~~a~~~la~~~~~~g 832 (967)
.++.++|.++...|++++|+..|++++... ....+..+|.++...|
T Consensus 100 ------------------------------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 100 ------------------------------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred ------------------------------HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence 678889999999999999999999998732 2347788888988888
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 002100 833 QRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFK 912 (967)
Q Consensus 833 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~ 912 (967)
++++|...+.++++..| +++.++..+|.++...|++++|+..++++++..
T Consensus 150 ~~~~A~~~~~~~~~~~~------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 199 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDP------------------------------QRPESLLELAELYYLRGQYKDARAYLERYQQTY 199 (234)
T ss_pred CHHHHHHHHHHHHHhCc------------------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888888877776555 445567778888999999999999999998886
Q ss_pred CC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 002100 913 PD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDP 946 (967)
Q Consensus 913 p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P 946 (967)
|. ...+..++.++...|+.++|....+.+....|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 200 NQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 66 45677788889999999999988888776654
No 81
>PLN02789 farnesyltranstransferase
Probab=99.67 E-value=1.5e-14 Score=156.78 Aligned_cols=187 Identities=13% Similarity=0.138 Sum_probs=157.9
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcC-cHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCH--HHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEEN-KLAAAITEINRIIGFKV-SPDCLELRAWISIALEDY--DGALRDVRA 611 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~--~~A~~~~~~ 611 (967)
++|+..+.++|+++|++..+|..++.++..++ ++++|+..++++++.+| +..++..++.+...+++. ++++..+.+
T Consensus 54 erAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~k 133 (320)
T PLN02789 54 PRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRK 133 (320)
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHH
Confidence 78888888999999999999999999998888 57899999999999999 888899999888888874 678888889
Q ss_pred HHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 002100 612 LLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRL 691 (967)
Q Consensus 612 al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~ 691 (967)
+++.+|++..++ ..++.+....++|+++ ++.+.++|+.+|.+..+|..++.++...
T Consensus 134 al~~dpkNy~AW------~~R~w~l~~l~~~~ee------------------L~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 134 ILSLDAKNYHAW------SHRQWVLRTLGGWEDE------------------LEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHhCcccHHHH------HHHHHHHHHhhhHHHH------------------HHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 999999999888 6778888888888888 8999999999999999999988887765
Q ss_pred ---cCH----HHHHHHHHHHHhcCCchhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccchH
Q 002100 692 ---NSQ----KAAMRSLRLARNYSTSEHEKLVYEGWILYD----TGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 692 ---g~~----~~A~~~l~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~ 746 (967)
+.+ ++++....+++..+|++..+|.+++.++.. +++..+|+..+.+++..+|+..
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~ 255 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHV 255 (320)
T ss_pred cccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcH
Confidence 223 467888889999999999999999999987 4556778888888887766544
No 82
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.66 E-value=1.6e-14 Score=151.74 Aligned_cols=197 Identities=16% Similarity=0.055 Sum_probs=146.0
Q ss_pred chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhh
Q 002100 553 SYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNL 631 (967)
Q Consensus 553 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 631 (967)
+..+..+|..+...|++++|+..++++++.+| +..++..+|.++..+|++++|+..++++++..|++...+ ..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------~~ 104 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVL------NN 104 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH------HH
Confidence 56778888888888888888888888888888 778888888888888888888888888888888877666 55
Q ss_pred HhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 002100 632 VETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAND--PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYST 709 (967)
Q Consensus 632 ~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~--p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p 709 (967)
++.++...+++++| +..+.+++... |.....+..+|.++...|++++|...++++++.+|
T Consensus 105 ~~~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 105 YGTFLCQQGKYEQA------------------MQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP 166 (234)
T ss_pred HHHHHHHcccHHHH------------------HHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 67777777777777 66677766543 34455666777777777777777777777777777
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHH
Q 002100 710 SEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQAL 789 (967)
Q Consensus 710 ~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~ 789 (967)
++..++..+|.++...|++++|+..+++++...|... ..+
T Consensus 167 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------------------------------~~~ 206 (234)
T TIGR02521 167 QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTA----------------------------------------ESL 206 (234)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------------------------------HHH
Confidence 7777777777777777777777777777776654332 344
Q ss_pred HHhHHHHHhcccHHHHHHHHHHHh
Q 002100 790 NNLGSVYVDCEKLDLAADCYMNAL 813 (967)
Q Consensus 790 ~~lg~~~~~~g~~~~A~~~~~~Al 813 (967)
..++.++...|+.++|..+.+.+.
T Consensus 207 ~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 207 WLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555666666777777766665543
No 83
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=8.9e-14 Score=141.52 Aligned_cols=244 Identities=18% Similarity=0.172 Sum_probs=210.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCC
Q 002100 682 FRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLN 761 (967)
Q Consensus 682 ~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~ 761 (967)
|..|.-++-.++.++|+..|-..++.+|+..++...+|.++..-|..+.|+..-+..+ ..|+..
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-~spdlT--------------- 102 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL-ESPDLT--------------- 102 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh-cCCCCc---------------
Confidence 4567778888999999999999999999999999999999999999999999887665 344322
Q ss_pred CCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc-CcH-HHHHHHHHHHHHhCCHHHHHH
Q 002100 762 PESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI-KHT-RAHQGLARVYHLKNQRKAAYD 839 (967)
Q Consensus 762 ~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~-~~~-~a~~~la~~~~~~g~~~~A~~ 839 (967)
..++..++..||.-|+..|-++.|...|...++. ... .++..|..+|....+|++|++
T Consensus 103 --------------------~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId 162 (389)
T COG2956 103 --------------------FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAID 162 (389)
T ss_pred --------------------hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 1134468899999999999999999999999984 333 399999999999999999999
Q ss_pred HHHHHHHHccCC-----HHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002100 840 EMTKLIEKARNN-----ASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIA 910 (967)
Q Consensus 840 ~~~~al~~~p~~-----~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~ 910 (967)
.-++..+..+.. +..|..++.. .+.+.|+..+.+|++.+|+.+.+-..+|.+++..|+|++|++.++.+++
T Consensus 163 ~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e 242 (389)
T COG2956 163 VAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLE 242 (389)
T ss_pred HHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHH
Confidence 999999988764 3345555532 7899999999999999999999999999999999999999999999999
Q ss_pred cCCC--hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhh
Q 002100 911 FKPD--LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATER 961 (967)
Q Consensus 911 ~~p~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~ 961 (967)
.+|+ ++++..+..+|.++|+.++.+..+.++.+..++..-.+-++..+++.
T Consensus 243 Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~ 295 (389)
T COG2956 243 QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQ 295 (389)
T ss_pred hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHh
Confidence 9999 56899999999999999999999999999999877666666555443
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.64 E-value=1.7e-13 Score=154.67 Aligned_cols=315 Identities=14% Similarity=0.013 Sum_probs=224.4
Q ss_pred CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhh
Q 002100 549 DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S---PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYG 624 (967)
Q Consensus 549 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 624 (967)
+|+.+.+|..+|..+...++.+.|.+.+.++....| + .+.....+.++...|++++|...++++++.+|++..++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~- 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLAL- 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH-
Confidence 799999999999999999999999999999888877 3 45788889999999999999999999999999998666
Q ss_pred hhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 625 QLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLA 704 (967)
Q Consensus 625 ~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~a 704 (967)
.. +..+...+.+..+ . ..+...+......+|........+|.++...|++++|+..++++
T Consensus 81 -----~~-~~~~~~~~~~~~~------------~--~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 81 -----KL-HLGAFGLGDFSGM------------R--DHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred -----HH-hHHHHHhcccccC------------c--hhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 3333333333222 0 01123333334566777777888899999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCc
Q 002100 705 RNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLR 784 (967)
Q Consensus 705 l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~ 784 (967)
++.+|+++.++..+|.+++..|++++|+..+++++...|... ..
T Consensus 141 l~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~------------------------------------~~ 184 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS------------------------------------ML 184 (355)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc------------------------------------ch
Confidence 999999999999999999999999999999999998776321 01
Q ss_pred hHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc--HH-HHH----HHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHH
Q 002100 785 KGQALNNLGSVYVDCEKLDLAADCYMNALNIKH--TR-AHQ----GLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEK 857 (967)
Q Consensus 785 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--~~-a~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 857 (967)
....+..+|.++...|++++|+..|++++...+ .. ... .+...+...|....+..+ +.+...
T Consensus 185 ~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~---------- 253 (355)
T cd05804 185 RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADY---------- 253 (355)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHH----------
Confidence 123567789999999999999999999876443 11 111 111122222221111111 111110
Q ss_pred HHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----------hHHHHHHHHHHHH
Q 002100 858 RSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD----------LQLLHLRAAFHDS 927 (967)
Q Consensus 858 ~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~----------~~~~~~~a~~~~~ 927 (967)
...... .+........++.++...|+.++|...++........ ......+|.++..
T Consensus 254 -------------~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 254 -------------AAWHFP-DHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred -------------HHhhcC-cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 000000 0112223335788888999999999999887653211 2366778999999
Q ss_pred cCChHHHHHHHHHHHhcC
Q 002100 928 MGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 928 ~g~~~~A~~~~~~al~~~ 945 (967)
.|++++|++.+..++.+.
T Consensus 320 ~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 320 EGNYATALELLGPVRDDL 337 (355)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 999999999999999765
No 85
>PLN02789 farnesyltranstransferase
Probab=99.64 E-value=3.6e-14 Score=153.85 Aligned_cols=259 Identities=14% Similarity=0.141 Sum_probs=199.2
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCchHHhhhhhhhhhH
Q 002100 555 PYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE-DYDGALRDVRALLTLDPSYMMFYGQLHGDNLV 632 (967)
Q Consensus 555 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 632 (967)
++-.+-.++...+++++|+..++++|.++| +..++..++.++..++ ++++|+..+.++++.+|++..++ +.+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW------~~R 112 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIW------HHR 112 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHh------HHH
Confidence 343344456667899999999999999999 8999999999999998 68999999999999999999999 556
Q ss_pred hhhHHHhhch--hhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 002100 633 ETLQPLVQQW--SQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS 710 (967)
Q Consensus 633 ~~l~~~~~~~--~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~ 710 (967)
+.+....++. ..+ +..+.++++.+|++..+|..++.++...|++++|+..+.++++.+|.
T Consensus 113 ~~~l~~l~~~~~~~e------------------l~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~ 174 (320)
T PLN02789 113 RWLAEKLGPDAANKE------------------LEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR 174 (320)
T ss_pred HHHHHHcCchhhHHH------------------HHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence 6666665542 233 88999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHc---CCh----HHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCC
Q 002100 711 EHEKLVYEGWILYDT---GHR----EEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGL 783 (967)
Q Consensus 711 ~~~a~~~lg~~~~~~---g~~----~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~ 783 (967)
+..+|.+++.++... |.+ ++++.+..++|.++|++.
T Consensus 175 N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~------------------------------------- 217 (320)
T PLN02789 175 NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNE------------------------------------- 217 (320)
T ss_pred chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCc-------------------------------------
Confidence 999999999998876 333 478888889999999776
Q ss_pred chHHHHHHhHHHHHh----cccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHH
Q 002100 784 RKGQALNNLGSVYVD----CEKLDLAADCYMNALNIK--HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEK 857 (967)
Q Consensus 784 ~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 857 (967)
.+|+.++.++.. .++..+|+..+.+++..+ ...++..|+.+|....+.. ..++..++..
T Consensus 218 ---SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~---~~~~~~~~~~--------- 282 (320)
T PLN02789 218 ---SPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPT---AEFRDTVDTL--------- 282 (320)
T ss_pred ---CHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccc---hhhhhhhhcc---------
Confidence 788888888877 456678999999988844 4458888999887532111 0111111000
Q ss_pred HHccCChHHHHHHHHHhhccCCCCchHHHHHH
Q 002100 858 RSEYCDRDMAKSDLSMATQLDPMRTYPYRYRA 889 (967)
Q Consensus 858 ~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la 889 (967)
-+.....++|...+...-+.||-+...|..+.
T Consensus 283 ~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~~~ 314 (320)
T PLN02789 283 AEELSDSTLAQAVCSELEVADPMRRNYWAWRK 314 (320)
T ss_pred ccccccHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 00112345666666666566776666665554
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=7.6e-12 Score=137.08 Aligned_cols=432 Identities=18% Similarity=0.098 Sum_probs=264.2
Q ss_pred HHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHh
Q 002100 466 VMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTA 545 (967)
Q Consensus 466 ~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~a 545 (967)
.+...++|++|.+.-.+.+...|......-.. -.+......| ++|+...++-
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cK-------------------------vValIq~~ky---~~ALk~ikk~ 72 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIVPDDEDAIRCK-------------------------VVALIQLDKY---EDALKLIKKN 72 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcCCCcHhhHhhh-------------------------HhhhhhhhHH---HHHHHHHHhc
Confidence 35567899999999999998866433322111 1233344455 6666333322
Q ss_pred HhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhh
Q 002100 546 TELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYG 624 (967)
Q Consensus 546 l~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 624 (967)
....-.+. ..+..|-|.+++++.++|+..++ ..++ +...+.++|.+++.+|+|++|+..|+.+++-+.++.....
T Consensus 73 ~~~~~~~~-~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~ 148 (652)
T KOG2376|consen 73 GALLVINS-FFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEER 148 (652)
T ss_pred chhhhcch-hhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 22121222 22789999999999999999999 5666 5668999999999999999999999999988777666552
Q ss_pred hhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002100 625 QLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPG-KSLLRFRQSLLLLRLNSQKAAMRSLRL 703 (967)
Q Consensus 625 ~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~l~~ 703 (967)
+. .+.+...... .. ..+.+...|. ....+|+.+-++...|+|.+|++.+++
T Consensus 149 r~---nl~a~~a~l~------------------------~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~k 200 (652)
T KOG2376|consen 149 RA---NLLAVAAALQ------------------------VQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEK 200 (652)
T ss_pred HH---HHHHHHHhhh------------------------HH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 21 1111111110 11 2333444454 456889999999999999999999999
Q ss_pred HHhc--------CCc--h-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH----HhhhcCCCCC-
Q 002100 704 ARNY--------STS--E-----HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAY----ALADSSLNPE- 763 (967)
Q Consensus 704 al~~--------~p~--~-----~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~----~la~~~~~~~- 763 (967)
++++ +.+ + ......++.++..+|+.++|...|...+..+|-++......- ++.....-.+
T Consensus 201 A~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~ 280 (652)
T KOG2376|consen 201 ALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDG 280 (652)
T ss_pred HHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCch
Confidence 9432 111 1 124667899999999999999999999999885542221111 1111110001
Q ss_pred -----chHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhCCHHH
Q 002100 764 -----SSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKNQRKA 836 (967)
Q Consensus 764 -----~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~ 836 (967)
.-.....+.+..+.... ...+...+.|.+...+..+.-+.+.+.....-...|.. -....+....+...+.+
T Consensus 281 ~~l~~k~~~~~~l~~~~l~~Ls-~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~k 359 (652)
T KOG2376|consen 281 DLLKSKKSQVFKLAEFLLSKLS-KKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKK 359 (652)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhh
Confidence 11111111121111111 11233456666666666666666555443332222222 11112222233336888
Q ss_pred HHHHHHHHHHHccCC-HHHHHHHHc----cCChHHHHHHHH--------HhhccCCCCchHHHHHHHHHHhCCCHHHHHH
Q 002100 837 AYDEMTKLIEKARNN-ASAYEKRSE----YCDRDMAKSDLS--------MATQLDPMRTYPYRYRAAVLMDDHKEAEAIA 903 (967)
Q Consensus 837 A~~~~~~al~~~p~~-~~~~~~~~~----~~~~~~A~~~l~--------~al~l~p~~~~~~~~la~~~~~~g~~~eAi~ 903 (967)
|.+.+...-+.+|.+ ..+...+.. .|+++.|+..+. ...+.. ..+.+...+-..+.+.++.+-|..
T Consensus 360 a~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~ 438 (652)
T KOG2376|consen 360 AIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASA 438 (652)
T ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHH
Confidence 888888888888876 444444443 288888888888 222221 223333344456666666666666
Q ss_pred HHHHHHhcC-------CCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 002100 904 ELSRAIAFK-------PDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 904 ~~~kal~~~-------p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~ 959 (967)
.+.+|+... +.. ..+...+.+..+-|+-++|...+++.+..+|++.+++.-+--+.
T Consensus 439 vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~ 502 (652)
T KOG2376|consen 439 VLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAY 502 (652)
T ss_pred HHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 666666432 221 25556788888889999999999999999999998876544333
No 87
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.61 E-value=7.1e-16 Score=171.85 Aligned_cols=141 Identities=19% Similarity=0.311 Sum_probs=123.5
Q ss_pred CCcccEEEEE-cCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHc-CCCCC----CCCH
Q 002100 253 DEDWDMSFCI-GNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSR-TKMLD----SFDP 326 (967)
Q Consensus 253 ~~~~Dv~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y-t~~~~----~~~~ 326 (967)
++.-|+.+++ +|+.|+||||+|++|+.||..||..-|.|+..-.+.... +..+.|+.||+|+| +++.. ....
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p--~~~e~m~ivLdylYs~d~~~~~k~~~~~ 785 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSP--LTVEHMSIVLDYLYSDDKVELFKDLKES 785 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCc--chHHHHHHHHHHHHccchHHHHhccchh
Confidence 4555666655 888999999999999999999999999999887776654 88999999999999 55553 2345
Q ss_pred HHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhhcCCch
Q 002100 327 RLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNP 396 (967)
Q Consensus 327 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~l~~~ 396 (967)
+.+.++|..||.|-+.+|++.|+..|.+.++ ..++..++++|.+|++++|...|++||+.|+...+...
T Consensus 786 dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~-lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Lear 854 (1267)
T KOG0783|consen 786 DFMFEILSIADQLLILELKSICEQSLLRKLN-LKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEAR 854 (1267)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhc-ccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhc
Confidence 6789999999999999999999999999999 99999999999999999999999999999998655433
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.61 E-value=1.3e-13 Score=134.78 Aligned_cols=202 Identities=15% Similarity=0.058 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHH
Q 002100 588 CLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVV 667 (967)
Q Consensus 588 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~ 667 (967)
+...+|.-|++.|++..|...++++|+.+|++..++ ..++.+|...++-+.| -+.|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~------~~~A~~Yq~~Ge~~~A------------------~e~Y 92 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAH------LVRAHYYQKLGENDLA------------------DESY 92 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHH------HHHHHHHHHcCChhhH------------------HHHH
Confidence 455555666666666666666666666666665555 4445555555555555 4555
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccch
Q 002100 668 HHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNY--STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSF 745 (967)
Q Consensus 668 ~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 745 (967)
++++.++|++..++.+.|..+..+|+|++|+..|++|+.. .+....++.++|.|-.+.|+++.|...|+++++++|++
T Consensus 93 rkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~ 172 (250)
T COG3063 93 RKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF 172 (250)
T ss_pred HHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence 5555566666666666777777777777777777777763 35556677788888888888888888888888888766
Q ss_pred HHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH--HHHHH
Q 002100 746 EAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT--RAHQG 823 (967)
Q Consensus 746 ~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~--~a~~~ 823 (967)
+ .+...++..++..|+|..|..++++....... ..+..
T Consensus 173 ~----------------------------------------~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L 212 (250)
T COG3063 173 P----------------------------------------PALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLL 212 (250)
T ss_pred C----------------------------------------hHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHH
Confidence 5 55666777777778888887777777663322 24555
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHccCCHH
Q 002100 824 LARVYHLKNQRKAAYDEMTKLIEKARNNAS 853 (967)
Q Consensus 824 la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 853 (967)
..++....|+.+.|.++=.++....|....
T Consensus 213 ~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 213 GIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 556777788888888877777777776543
No 89
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.60 E-value=3.3e-15 Score=131.57 Aligned_cols=90 Identities=27% Similarity=0.441 Sum_probs=85.6
Q ss_pred cEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHHHHHHHHHHh
Q 002100 257 DMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLVLELLSFA 336 (967)
Q Consensus 257 Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~ll~~A 336 (967)
||+|.++|+.|++||.+|+++|+||+.||.+++.++....|.+++ +++++|+.+++|+||+++ .++..++.+++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~--~~~~~f~~~l~~ly~~~~-~~~~~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDD--VSPEDFRALLEFLYTGKL-DLPEENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecC--CCHHHHHHHHHeecCcee-ecCHHHHHHHHHHH
Confidence 799999999999999999999999999999998888788999976 999999999999999999 88888999999999
Q ss_pred chhChHHHHHHHH
Q 002100 337 NRFCCEELKSACD 349 (967)
Q Consensus 337 ~~~~~~~l~~~c~ 349 (967)
++|+++.|++.|+
T Consensus 78 ~~~~~~~l~~~c~ 90 (90)
T smart00225 78 DYLQIPGLVELCE 90 (90)
T ss_pred HHHCcHHHHhhhC
Confidence 9999999999984
No 90
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.59 E-value=5.6e-13 Score=150.52 Aligned_cols=241 Identities=17% Similarity=0.094 Sum_probs=195.6
Q ss_pred hhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc--------CCCChHHHHHHHHHHHHhcCHHHHHHHH
Q 002100 630 NLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN--------DPGKSLLRFRQSLLLLRLNSQKAAMRSL 701 (967)
Q Consensus 630 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~--------~p~~~~~~~~~g~~~~~~g~~~~A~~~l 701 (967)
.+++..|...++|++| ...+.++++. .|.-......+|.+|..++++.+|+..|
T Consensus 203 ~~La~~y~~~g~~e~A------------------~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly 264 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKA------------------EPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLY 264 (508)
T ss_pred HHHHHHHHHhccHHHH------------------HHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 6689999999999999 6666666665 4554555567999999999999999999
Q ss_pred HHHHhc--------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHH
Q 002100 702 RLARNY--------STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLE 773 (967)
Q Consensus 702 ~~al~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le 773 (967)
++|+.+ +|....++.+||.+|...|++++|..++++|+++....
T Consensus 265 ~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~---------------------------- 316 (508)
T KOG1840|consen 265 EEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL---------------------------- 316 (508)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh----------------------------
Confidence 999875 45667789999999999999999999999999765520
Q ss_pred HHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc-------cCcH---HHHHHHHHHHHHhCCHHHHHHHHHH
Q 002100 774 EALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN-------IKHT---RAHQGLARVYHLKNQRKAAYDEMTK 843 (967)
Q Consensus 774 ~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-------~~~~---~a~~~la~~~~~~g~~~~A~~~~~~ 843 (967)
.....+..+..+.+++.++..++++++|+.+|+++++ .++. ..+.+||.+|..+|++++|.+.|++
T Consensus 317 ----~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 317 ----LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred ----hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 1122344557889999999999999999999999987 2221 2788899999999999999999999
Q ss_pred HHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CC----h
Q 002100 844 LIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFK----PD----L 915 (967)
Q Consensus 844 al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~----p~----~ 915 (967)
+|.+.... --..++....++..+|..|.+.+++.+|...|..++.+. |+ .
T Consensus 393 ai~~~~~~----------------------~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~ 450 (508)
T KOG1840|consen 393 AIQILREL----------------------LGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVT 450 (508)
T ss_pred HHHHHHhc----------------------ccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchH
Confidence 99865420 011234456778889999999999999999999988653 33 1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 916 QLLHLRAAFHDSMGDHLHTQRDCEAAL 942 (967)
Q Consensus 916 ~~~~~~a~~~~~~g~~~~A~~~~~~al 942 (967)
..+.++|.+|..+|++++|.+..++++
T Consensus 451 ~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 451 YTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 388899999999999999999999998
No 91
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.59 E-value=4.1e-13 Score=151.59 Aligned_cols=254 Identities=18% Similarity=0.187 Sum_probs=198.4
Q ss_pred hCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhcc--------CCC-hhHHHHHHHHHHHhcCHHHHHHHHHHHHHh---
Q 002100 548 LDPTLSYPYKYRAILLVEENKLAAAITEINRIIGF--------KVS-PDCLELRAWISIALEDYDGALRDVRALLTL--- 615 (967)
Q Consensus 548 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l--- 615 (967)
.+|....+...+|..|..+|+|+.|+..+++++.+ .|. ......+|.+|..++++++|+..|++++++
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45777778888999999999999999999999988 443 445556999999999999999999999987
Q ss_pred --CCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc-CCCChHHHHHHHHHHHHhc
Q 002100 616 --DPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN-DPGKSLLRFRQSLLLLRLN 692 (967)
Q Consensus 616 --~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~-~p~~~~~~~~~g~~~~~~g 692 (967)
.++++..-. ...+++.+|...++|.+|..+. ..|+..+.+.... .|.-...+..++.++..++
T Consensus 274 ~~G~~h~~va~---~l~nLa~ly~~~GKf~EA~~~~-----------e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~ 339 (508)
T KOG1840|consen 274 VFGEDHPAVAA---TLNNLAVLYYKQGKFAEAEEYC-----------ERALEIYEKLLGASHPEVAAQLSELAAILQSMN 339 (508)
T ss_pred hcCCCCHHHHH---HHHHHHHHHhccCChHHHHHHH-----------HHHHHHHHHhhccChHHHHHHHHHHHHHHHHhc
Confidence 234433321 1277899999999999994221 1234555553222 2444567788999999999
Q ss_pred CHHHHHHHHHHHHhcC--------CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCc
Q 002100 693 SQKAAMRSLRLARNYS--------TSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPES 764 (967)
Q Consensus 693 ~~~~A~~~l~~al~~~--------p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~ 764 (967)
++++|...+++++++. +.-+..+.++|.+|+.+|++++|...|++++.+.....
T Consensus 340 ~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~------------------ 401 (508)
T KOG1840|consen 340 EYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL------------------ 401 (508)
T ss_pred chhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc------------------
Confidence 9999999999988753 24467788999999999999999999999997765222
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc------cCc---HHHHHHHHHHHHHhCCHH
Q 002100 765 SAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN------IKH---TRAHQGLARVYHLKNQRK 835 (967)
Q Consensus 765 ~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~------~~~---~~a~~~la~~~~~~g~~~ 835 (967)
.......+..++++|..|.+.+++.+|...|.+++. +++ ...+.+||.+|..+|+++
T Consensus 402 --------------~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e 467 (508)
T KOG1840|consen 402 --------------GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYE 467 (508)
T ss_pred --------------cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHH
Confidence 011223346889999999999999999999988876 333 248999999999999999
Q ss_pred HHHHHHHHHHHH
Q 002100 836 AAYDEMTKLIEK 847 (967)
Q Consensus 836 ~A~~~~~~al~~ 847 (967)
+|+++..+++..
T Consensus 468 ~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 468 AAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHHHH
Confidence 999999988853
No 92
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=3e-12 Score=130.50 Aligned_cols=259 Identities=13% Similarity=0.050 Sum_probs=218.9
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-----ChhHHHHHHHHHHHhcCHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-----SPDCLELRAWISIALEDYDGALRD 608 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~la~~~~~~g~~~~A~~~ 608 (967)
+.++|+..|...++.+|...++...+|..+...|..+.||..-+..+.... ..-++..+|.-|...|-++.|...
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~ 129 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDI 129 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 459999999999999999999999999999999999999998776665332 134888999999999999999999
Q ss_pred HHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCC-----hHHHHH
Q 002100 609 VRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGK-----SLLRFR 683 (967)
Q Consensus 609 ~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~-----~~~~~~ 683 (967)
|..+.+...--..+. ..+-.+|....+|.+| ++...+..+..+.. +..|..
T Consensus 130 f~~L~de~efa~~Al------qqLl~IYQ~treW~KA------------------Id~A~~L~k~~~q~~~~eIAqfyCE 185 (389)
T COG2956 130 FNQLVDEGEFAEGAL------QQLLNIYQATREWEKA------------------IDVAERLVKLGGQTYRVEIAQFYCE 185 (389)
T ss_pred HHHHhcchhhhHHHH------HHHHHHHHHhhHHHHH------------------HHHHHHHHHcCCccchhHHHHHHHH
Confidence 998876543333444 6677899999999999 88888888887764 345667
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCC
Q 002100 684 QSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPE 763 (967)
Q Consensus 684 ~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~ 763 (967)
++..+....+.+.|+..+++|++.+|+...+-..+|.+....|+|+.|++.++.+++.+|++.
T Consensus 186 LAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl----------------- 248 (389)
T COG2956 186 LAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL----------------- 248 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH-----------------
Confidence 888888899999999999999999999999999999999999999999999999999999654
Q ss_pred chHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc-HHHHHHHHHHHHHhCCHHHHHHHHH
Q 002100 764 SSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH-TRAHQGLARVYHLKNQRKAAYDEMT 842 (967)
Q Consensus 764 ~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~-~~a~~~la~~~~~~g~~~~A~~~~~ 842 (967)
+.+...|-.+|.+.|+.++.+..+.++.+..+ ..+...++.+-....-.+.|...+.
T Consensus 249 ----------------------~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 249 ----------------------SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred ----------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHH
Confidence 25667778899999999999999999998544 4477778888888888899999999
Q ss_pred HHHHHccCCHHHH
Q 002100 843 KLIEKARNNASAY 855 (967)
Q Consensus 843 ~al~~~p~~~~~~ 855 (967)
+-+...|+--..+
T Consensus 307 ~Ql~r~Pt~~gf~ 319 (389)
T COG2956 307 RQLRRKPTMRGFH 319 (389)
T ss_pred HHHhhCCcHHHHH
Confidence 9999988744333
No 93
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=3.1e-11 Score=123.95 Aligned_cols=417 Identities=12% Similarity=0.043 Sum_probs=226.1
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhCc--hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChH
Q 002100 459 AFHQLGVVMLEREEYKDAQNWFKAAVEAGH--IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGK 536 (967)
Q Consensus 459 a~~~lG~~~~~~g~y~~A~~~f~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~ 536 (967)
...-+|.+++..|+|++|...|+.+.+.+. ...+..||-+++-.|.+.+|.....++.+.......+....-++ +.+
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl-ndE 137 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL-NDE 137 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-CcH
Confidence 344589999999999999999999988743 56677889999999999999988877755332222222211223 335
Q ss_pred HHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 537 EKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 537 ~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 615 (967)
+-+..|.+-++-. .+--..+|.+++..-.|++||+.|.+++..+| -...-..+|.||+++.-|+-+.+.+.-.+..
T Consensus 138 k~~~~fh~~LqD~---~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 138 KRILTFHSSLQDT---LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHHHhhh---HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 5555555555422 23456678888888899999999999999999 4556678899999999999999999999999
Q ss_pred CCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH-----
Q 002100 616 DPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLR----- 690 (967)
Q Consensus 616 ~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~----- 690 (967)
.|+.+.+. .+.+-....+=+-..| ........ .+-+.. +..+..+.+
T Consensus 215 ~pdStiA~------NLkacn~fRl~ngr~a------------------e~E~k~la-dN~~~~---~~f~~~l~rHNLVv 266 (557)
T KOG3785|consen 215 FPDSTIAK------NLKACNLFRLINGRTA------------------EDEKKELA-DNIDQE---YPFIEYLCRHNLVV 266 (557)
T ss_pred CCCcHHHH------HHHHHHHhhhhccchh------------------HHHHHHHH-hccccc---chhHHHHHHcCeEE
Confidence 99988877 2333222221111111 01111110 000000 000111111
Q ss_pred hcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHH-HHHHHHHhhhcC---CCCCchH
Q 002100 691 LNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEA-FFLKAYALADSS---LNPESSA 766 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~-~~~~~~~la~~~---~~~~~~~ 766 (967)
-.+-+.|++.+-..+++-| ++..++...|.++++.++|....+. ++|..+. +.++....+..+ ...+...
T Consensus 267 FrngEgALqVLP~L~~~IP---EARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 267 FRNGEGALQVLPSLMKHIP---EARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred EeCCccHHHhchHHHhhCh---HhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 1223344444444444333 3666666666777777777666553 3443321 123322211111 1111111
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002100 767 YVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKL 844 (967)
Q Consensus 767 ~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 844 (967)
-+.+.+.-......... ....-..++..++-..++++.+.+++..-. .+.....+++|.++...|++.+|.+.|-+.
T Consensus 341 iAqqffqlVG~Sa~ecD-TIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECD-TIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHHhcccccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence 11111111111100000 000112234444445555555554443332 333345555666666666666655555433
Q ss_pred HHHccCCHHHHHHHHccCChHHHHHHHHHhhccC-CCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh---HHHHH
Q 002100 845 IEKARNNASAYEKRSEYCDRDMAKSDLSMATQLD-PMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL---QLLHL 920 (967)
Q Consensus 845 l~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~-p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~---~~~~~ 920 (967)
...+ .+.......+|.+|...++.+-|-..+- +.+... ..+..
T Consensus 420 ------------------------------s~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~t~~e~fsLLql 466 (557)
T KOG3785|consen 420 ------------------------------SGPEIKNKILYKSMLARCYIRNKKPQLAWDMML---KTNTPSERFSLLQL 466 (557)
T ss_pred ------------------------------cChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH---hcCCchhHHHHHHH
Confidence 2222 1222333456777777777776655443 333222 24555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002100 921 RAAFHDSMGDHLHTQRDCEAALCLDPN 947 (967)
Q Consensus 921 ~a~~~~~~g~~~~A~~~~~~al~~~P~ 947 (967)
+|....+.+++-=|-+.|...-.+||+
T Consensus 467 IAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 467 IANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 666677777777777777766666665
No 94
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=3e-10 Score=121.15 Aligned_cols=385 Identities=10% Similarity=-0.007 Sum_probs=285.1
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
+...|...+++|+..+-.+...|...+.+-++.++...|...+++|+.+-| -...++....+-..+|+...|.+.|++-
T Consensus 88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 448999999999999999999999999999999999999999999999999 6778888888889999999999999999
Q ss_pred HHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhc
Q 002100 613 LTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLN 692 (967)
Q Consensus 613 l~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g 692 (967)
++..|+...-.. + -..-.....++.| -..|++.+-..|+ ...|...+..-.+.|
T Consensus 168 ~~w~P~eqaW~s-----f--I~fElRykeiera------------------R~IYerfV~~HP~-v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 168 MEWEPDEQAWLS-----F--IKFELRYKEIERA------------------RSIYERFVLVHPK-VSNWIKYARFEEKHG 221 (677)
T ss_pred HcCCCcHHHHHH-----H--HHHHHHhhHHHHH------------------HHHHHHHheeccc-HHHHHHHHHHHHhcC
Confidence 999998543331 1 1111122233344 7888888888876 566777788888999
Q ss_pred CHHHHHHHHHHHHhcCCchhH---HHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHH--HHHHHHhhhcCCCCCchHH
Q 002100 693 SQKAAMRSLRLARNYSTSEHE---KLVYEGWILYDTGHREEALAKAEESISIQRSFEAF--FLKAYALADSSLNPESSAY 767 (967)
Q Consensus 693 ~~~~A~~~l~~al~~~p~~~~---a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~--~~~~~~la~~~~~~~~~~~ 767 (967)
+..-|...|++|++.-.++.. ..+..|.--..+..++.|...|+-|+..-|...+. |.+-...-....+....+.
T Consensus 222 ~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 222 NVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 999999999999987665543 23445555667788999999999999988876322 2222244445555555555
Q ss_pred HHHHHHH--HhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH---------HHHHHHHHHH---HHhCC
Q 002100 768 VIQLLEE--ALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT---------RAHQGLARVY---HLKNQ 833 (967)
Q Consensus 768 a~~~le~--~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~---------~a~~~la~~~---~~~g~ 833 (967)
++.--.+ ..+....+|.+-++|+..-.+-...|+.+.-.+.|++|+..-|+ +++..+-.++ ....+
T Consensus 302 ~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed 381 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAED 381 (677)
T ss_pred HHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5433221 12233456666678887777777889999999999999983332 1233332222 34678
Q ss_pred HHHHHHHHHHHHHHccC----CHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHH
Q 002100 834 RKAAYDEMTKLIEKARN----NASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAEL 905 (967)
Q Consensus 834 ~~~A~~~~~~al~~~p~----~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~ 905 (967)
.+.+.+.|+.+|++-|. -+..|...+.+ .+...|...+-.|+...|.+-. ....-.+-.+.++++...+.|
T Consensus 382 ~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl-Fk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 382 VERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL-FKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH-HHHHHHHHHHHhhHHHHHHHH
Confidence 88889999999998885 34455555533 6788899999999999887543 233334556678899999999
Q ss_pred HHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 906 SRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 906 ~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
++.|+..|.+ .++...|.+-..+|+.+.|...|+-|+...
T Consensus 461 Ekfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 461 EKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 9999999984 588888999999999999999999887654
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.48 E-value=3.8e-11 Score=135.50 Aligned_cols=307 Identities=12% Similarity=-0.028 Sum_probs=186.0
Q ss_pred chHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchh-----HHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHH
Q 002100 453 SWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIY-----SLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQ 527 (967)
Q Consensus 453 ~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~-----a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~ 527 (967)
+|+.+.++..+|..+...+++++|...+.++.+..+.. .....+.++ .
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~---------------------------~ 54 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSA---------------------------W 54 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHH---------------------------H
Confidence 46678899999999999999999999999888774422 122222222 2
Q ss_pred HHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcH----HHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCH
Q 002100 528 ERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKL----AAAITEINRIIGFKV-SPDCLELRAWISIALEDY 602 (967)
Q Consensus 528 ~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~----~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~ 602 (967)
..+. .++|+..++++++.+|++..++.. +..+...+++ ..+.+.+.......| ...++..+|.++...|++
T Consensus 55 ~~g~---~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~ 130 (355)
T cd05804 55 IAGD---LPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQY 130 (355)
T ss_pred HcCC---HHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCH
Confidence 3332 266777777777777777665554 4444444333 333333333223444 455666777777777777
Q ss_pred HHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChH---
Q 002100 603 DGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSL--- 679 (967)
Q Consensus 603 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~--- 679 (967)
++|+..++++++++|++...+ ..++.++...+++++| +..+.+.+...|..+.
T Consensus 131 ~~A~~~~~~al~~~p~~~~~~------~~la~i~~~~g~~~eA------------------~~~l~~~l~~~~~~~~~~~ 186 (355)
T cd05804 131 DRAEEAARRALELNPDDAWAV------HAVAHVLEMQGRFKEG------------------IAFMESWRDTWDCSSMLRG 186 (355)
T ss_pred HHHHHHHHHHHhhCCCCcHHH------HHHHHHHHHcCCHHHH------------------HHHHHhhhhccCCCcchhH
Confidence 777777777777777776665 5566677777777777 6666666666553322
Q ss_pred -HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--hhHHHH---HHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Q 002100 680 -LRFRQSLLLLRLNSQKAAMRSLRLARNYSTS--EHEKLV---YEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAY 753 (967)
Q Consensus 680 -~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~--~~~a~~---~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 753 (967)
.+..++.++...|++++|+..|++++...|. .....+ .+.+.+...|....+... +.+....+
T Consensus 187 ~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~---------- 255 (355)
T cd05804 187 HNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAA---------- 255 (355)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHH----------
Confidence 3456777788888888888888887665552 111111 112222223332222221 11111100
Q ss_pred HhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC------c-----HHHHH
Q 002100 754 ALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK------H-----TRAHQ 822 (967)
Q Consensus 754 ~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~------~-----~~a~~ 822 (967)
..... +.....-...+.++...|+.++|...++...... . .....
T Consensus 256 -----------------------~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~ 311 (355)
T cd05804 256 -----------------------WHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPL 311 (355)
T ss_pred -----------------------hhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHH
Confidence 00000 0111122346777888899999998888766511 1 12567
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 002100 823 GLARVYHLKNQRKAAYDEMTKLIEKAR 849 (967)
Q Consensus 823 ~la~~~~~~g~~~~A~~~~~~al~~~p 849 (967)
..|.+++.+|++++|.+.+..++....
T Consensus 312 l~A~~~~~~g~~~~A~~~L~~al~~a~ 338 (355)
T cd05804 312 AEALYAFAEGNYATALELLGPVRDDLA 338 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 788899999999999999999998653
No 96
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.8e-10 Score=126.56 Aligned_cols=228 Identities=18% Similarity=0.181 Sum_probs=161.6
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALL 613 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al 613 (967)
++++|....++.+...|++..+....-.++...++|++|+...++-..........+..|.|+++++..++|+..++
T Consensus 27 e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~--- 103 (652)
T KOG2376|consen 27 EYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK--- 103 (652)
T ss_pred HHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---
Confidence 55999999999999999999999999999999999999996554433222222333789999999999999999998
Q ss_pred HhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcC
Q 002100 614 TLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNS 693 (967)
Q Consensus 614 ~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~ 693 (967)
..++.+.... .+.+.+.+.+++|++| +..|+..++.+.++...-.+...+-...
T Consensus 104 ~~~~~~~~ll------~L~AQvlYrl~~ydea------------------ldiY~~L~kn~~dd~d~~~r~nl~a~~a-- 157 (652)
T KOG2376|consen 104 GLDRLDDKLL------ELRAQVLYRLERYDEA------------------LDIYQHLAKNNSDDQDEERRANLLAVAA-- 157 (652)
T ss_pred cccccchHHH------HHHHHHHHHHhhHHHH------------------HHHHHHHHhcCCchHHHHHHHHHHHHHH--
Confidence 4555555555 7789999999999999 9999999888776555444333222111
Q ss_pred HHHHHHH-HHHHHhcCCc-hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHH
Q 002100 694 QKAAMRS-LRLARNYSTS-EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQL 771 (967)
Q Consensus 694 ~~~A~~~-l~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~ 771 (967)
+... ..+.....|+ ..+.+++.+-++...|+|.+|++.+++++.+.... +...+.. .+....
T Consensus 158 ---~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-------l~~~d~~--eEeie~---- 221 (652)
T KOG2376|consen 158 ---ALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREK-------LEDEDTN--EEEIEE---- 221 (652)
T ss_pred ---hhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh-------hcccccc--hhhHHH----
Confidence 1111 2333444444 56789999999999999999999999997554311 0000110 001111
Q ss_pred HHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH
Q 002100 772 LEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT 818 (967)
Q Consensus 772 le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~ 818 (967)
........++.++..+|+.++|...|...+..++.
T Consensus 222 ------------el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 222 ------------ELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred ------------HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence 11235667788888889999998888888875443
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.44 E-value=5.9e-12 Score=133.02 Aligned_cols=175 Identities=13% Similarity=0.013 Sum_probs=148.0
Q ss_pred hCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-Ch---hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 548 LDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SP---DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 548 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~---~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
.++..+..++.+|..++..|++++|+..|++++...| ++ .+++.+|.++...|++++|+..|+++++.+|+++...
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4456778899999999999999999999999999999 54 6889999999999999999999999999999888742
Q ss_pred hhhhhhhhHhhhHHHh--------hchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH--------------
Q 002100 624 GQLHGDNLVETLQPLV--------QQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR-------------- 681 (967)
Q Consensus 624 ~~~~~~~~~~~l~~~~--------~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~-------------- 681 (967)
.. .+.++.++... +++++| +..+.+++..+|.+...+
T Consensus 108 ~a---~~~~g~~~~~~~~~~~~~~~~~~~A------------------~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~ 166 (235)
T TIGR03302 108 YA---YYLRGLSNYNQIDRVDRDQTAAREA------------------FEAFQELIRRYPNSEYAPDAKKRMDYLRNRLA 166 (235)
T ss_pred HH---HHHHHHHHHHhcccccCCHHHHHHH------------------HHHHHHHHHHCCCChhHHHHHHHHHHHHHHHH
Confidence 11 16667777654 556666 899999999999876432
Q ss_pred ---HHHHHHHHHhcCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 682 ---FRQSLLLLRLNSQKAAMRSLRLARNYSTSE---HEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 682 ---~~~g~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
+.+|.+|...|++.+|+..++++++..|+. +++++.+|.++..+|++++|...++......|
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 356888999999999999999999997754 58999999999999999999998888765544
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.44 E-value=6.1e-12 Score=132.93 Aligned_cols=199 Identities=14% Similarity=0.087 Sum_probs=131.5
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchh---HHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Q 002100 675 PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEH---EKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLK 751 (967)
Q Consensus 675 p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~---~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 751 (967)
+..+..++.+|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++.+|++.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----- 104 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP----- 104 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC-----
Confidence 34445556666666666666666666666666655543 3555566666666666666666666665555332
Q ss_pred HHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 002100 752 AYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLK 831 (967)
Q Consensus 752 ~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~ 831 (967)
....+++.+|.++... ++.++...
T Consensus 105 --------------------------------~~~~a~~~~g~~~~~~------------------------~~~~~~~~ 128 (235)
T TIGR03302 105 --------------------------------DADYAYYLRGLSNYNQ------------------------IDRVDRDQ 128 (235)
T ss_pred --------------------------------chHHHHHHHHHHHHHh------------------------cccccCCH
Confidence 1123455555554332 11123334
Q ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 002100 832 NQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAF 911 (967)
Q Consensus 832 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~ 911 (967)
|++++|++.|+++++.+|++..++..+......... .......+|.+|++.|++.+|+..|+++++.
T Consensus 129 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~-------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 129 TAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR-------------LAGKELYVARFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred HHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 789999999999999999887665444322111111 1123457899999999999999999999999
Q ss_pred CCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002100 912 KPD----LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPN 947 (967)
Q Consensus 912 ~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~ 947 (967)
.|+ .++++.+|.++..+|++++|...++......|+
T Consensus 196 ~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 196 YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 876 258999999999999999999998888777663
No 99
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.42 E-value=6.3e-10 Score=127.71 Aligned_cols=298 Identities=12% Similarity=0.052 Sum_probs=190.8
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHhC--chhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCCh
Q 002100 458 LAFHQLGVVMLEREEYKDAQNWFKAAVEAG--HIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSG 535 (967)
Q Consensus 458 ~a~~~lG~~~~~~g~y~~A~~~f~~al~~~--~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~ 535 (967)
..+.....++.+.|++++|++.+++....- .....-..|.++.+.|+.
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~------------------------------ 54 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRK------------------------------ 54 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCH------------------------------
Confidence 345556677888888888888887765542 233333444444444433
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhc-----CcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHH-
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEE-----NKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDV- 609 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~- 609 (967)
++|...|...|+.+|++...|..+..+.... .+.+.-.+.|++.....|...+...+...+..-.+|......|
T Consensus 55 ~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl 134 (517)
T PF12569_consen 55 EEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYL 134 (517)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHH
Confidence 7777888888888888888887777776332 3567778888888888884444444444444444555544444
Q ss_pred HHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHh------------cCCCC
Q 002100 610 RALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLA------------NDPGK 677 (967)
Q Consensus 610 ~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~------------~~p~~ 677 (967)
...+.. .-|..+. .+--+|. +-.+++...++. ..+...++ ..|..
T Consensus 135 ~~~l~K--gvPslF~------~lk~Ly~---d~~K~~~i~~l~------------~~~~~~l~~~~~~~~~~~~~~~~p~ 191 (517)
T PF12569_consen 135 RPQLRK--GVPSLFS------NLKPLYK---DPEKAAIIESLV------------EEYVNSLESNGSFSNGDDEEKEPPS 191 (517)
T ss_pred HHHHhc--CCchHHH------HHHHHHc---ChhHHHHHHHHH------------HHHHHhhcccCCCCCccccccCCch
Confidence 333322 3333331 1112222 122222111111 11111111 11222
Q ss_pred --hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHh
Q 002100 678 --SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYAL 755 (967)
Q Consensus 678 --~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~l 755 (967)
.++++.+++.|...|++++|+..+++++++.|..++.++..|.++...|++++|...++.|-.+|+.+.
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR--------- 262 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR--------- 262 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH---------
Confidence 356788999999999999999999999999999999999999999999999999999999999998554
Q ss_pred hhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC--cH---------HHHHHH
Q 002100 756 ADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK--HT---------RAHQGL 824 (967)
Q Consensus 756 a~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~---------~a~~~l 824 (967)
..-...+..++..|+.++|.+.+..-...+ +. ......
T Consensus 263 -------------------------------yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~ 311 (517)
T PF12569_consen 263 -------------------------------YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETEC 311 (517)
T ss_pred -------------------------------HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHH
Confidence 233334556667777777777776666533 11 023346
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHc
Q 002100 825 ARVYHLKNQRKAAYDEMTKLIEKA 848 (967)
Q Consensus 825 a~~~~~~g~~~~A~~~~~~al~~~ 848 (967)
|.+|.++|++..|++.|..+.+..
T Consensus 312 a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 312 AEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH
Confidence 777788888888887777666554
No 100
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=1e-09 Score=115.94 Aligned_cols=300 Identities=14% Similarity=0.028 Sum_probs=200.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhh
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVET 634 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 634 (967)
...-|..-+..|+|.+|.+...+.-+..+ ...+|..-+....++||++.|-.++.++-+..+++..
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l------------- 153 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTL------------- 153 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchH-------------
Confidence 33444555555666666666666555555 3334444455555556666665555555554333222
Q ss_pred hHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHH
Q 002100 635 LQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEK 714 (967)
Q Consensus 635 l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a 714 (967)
.....++.++...|+++.|.....++.+..|.++++
T Consensus 154 --------------------------------------------~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~v 189 (400)
T COG3071 154 --------------------------------------------AVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEV 189 (400)
T ss_pred --------------------------------------------HHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHH
Confidence 223345666777888888888888888888888888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHH
Q 002100 715 LVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGS 794 (967)
Q Consensus 715 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~ 794 (967)
+.....+|...|++.+......+.-+-.--... .+.. ++ ..++..+-.
T Consensus 190 lrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~-------------------e~~~-le------------~~a~~glL~ 237 (400)
T COG3071 190 LRLALRAYIRLGAWQALLAILPKLRKAGLLSDE-------------------EAAR-LE------------QQAWEGLLQ 237 (400)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHccCCChH-------------------HHHH-HH------------HHHHHHHHH
Confidence 888888888888888888777665533221100 0000 00 012221111
Q ss_pred HHHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHH--ccCChHHHHHH
Q 002100 795 VYVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS--EYCDRDMAKSD 870 (967)
Q Consensus 795 ~~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~--~~~~~~~A~~~ 870 (967)
-....+..+.=..+++..-. .+++.....++.-+...|++++|.+....+++..-+.- .....+ ..++...-++.
T Consensus 238 q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l~~~d~~~l~k~ 316 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRLRPGDPEPLIKA 316 (400)
T ss_pred HHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhcCCCCchHHHHH
Confidence 11111111111123322211 33455667778888889999999999999998766533 222223 34888888999
Q ss_pred HHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 871 LSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 871 l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
.++.+...|+++..++.+|.++++.+.+.+|..+|+.+++..|+...+..+|.++.++|+.++|.+.+++++.+.
T Consensus 317 ~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 317 AEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998889999999999999999999999998543
No 101
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.37 E-value=9.9e-11 Score=139.61 Aligned_cols=151 Identities=10% Similarity=-0.041 Sum_probs=127.4
Q ss_pred hhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhh
Q 002100 547 ELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQ 625 (967)
Q Consensus 547 ~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 625 (967)
..+|.+..++..+...+...+++++|+..++.+++..| ....|+.+|.++.+.+++.+|... .++...+.+....
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~-- 100 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWA-- 100 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchh--
Confidence 45788889999999999999999999999999999999 788999999999999998888766 6666555433221
Q ss_pred hhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002100 626 LHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLAR 705 (967)
Q Consensus 626 ~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al 705 (967)
++..+.+.+...+.+..+++.+|.+|-++|++++|...+++++
T Consensus 101 -------------------------------------~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L 143 (906)
T PRK14720 101 -------------------------------------IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLV 143 (906)
T ss_pred -------------------------------------HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 1555555566677888899999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 706 NYSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 706 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
+.+|+++.++.++|..|... +.++|++++.+|+
T Consensus 144 ~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 144 KADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred hcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 99999999999999999988 9999999999988
No 102
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=5.7e-09 Score=107.60 Aligned_cols=402 Identities=12% Similarity=0.022 Sum_probs=255.6
Q ss_pred HhhcCChHHHHHHHHHHHHhCc---hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHH
Q 002100 467 MLEREEYKDAQNWFKAAVEAGH---IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLN 543 (967)
Q Consensus 467 ~~~~g~y~~A~~~f~~al~~~~---~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~ 543 (967)
++.+.||..|+..++-.+..+. .....++|-++++.|++ ++|+..|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY------------------------------~~Al~~Y~ 81 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDY------------------------------EEALNVYT 81 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccH------------------------------HHHHHHHH
Confidence 4567899999999988887644 34455666666666555 55555666
Q ss_pred HhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHH
Q 002100 544 TATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMF 622 (967)
Q Consensus 544 ~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 622 (967)
-+.+.+.-+...+.++|.+++-.|.|.+|...-.++ | ++-...++-.+..+.++-++-.. |..-+.-..++.
T Consensus 82 ~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~-fh~~LqD~~Edq-- 154 (557)
T KOG3785|consen 82 FLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILT-FHSSLQDTLEDQ-- 154 (557)
T ss_pred HHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHH-HHHHHhhhHHHH--
Confidence 555555556677888888888889998887665544 4 56666666666667776555443 333332211211
Q ss_pred hhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHH
Q 002100 623 YGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLR 702 (967)
Q Consensus 623 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~ 702 (967)
.-++-+....-.|.+| +.+|.+.+..+|....+-..++.+|.++.-|+-+.+.+.
T Consensus 155 -------LSLAsvhYmR~HYQeA------------------IdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 155 -------LSLASVHYMRMHYQEA------------------IDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred -------HhHHHHHHHHHHHHHH------------------HHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 2223444444556666 888999998888877777788899999999999999888
Q ss_pred HHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHh-cccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCC
Q 002100 703 LARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESIS-IQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSD 781 (967)
Q Consensus 703 ~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~-~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~ 781 (967)
-.++..|+.+-+....+-.++++=+-..|....+.... .+.+++ | ..+.+-....--..-+.+++.|-.+++..
T Consensus 210 vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~--f-~~~l~rHNLVvFrngEgALqVLP~L~~~I-- 284 (557)
T KOG3785|consen 210 VYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP--F-IEYLCRHNLVVFRNGEGALQVLPSLMKHI-- 284 (557)
T ss_pred HHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch--h-HHHHHHcCeEEEeCCccHHHhchHHHhhC--
Confidence 88888998888888888777765444444444333221 122111 1 00100000000011123444444444332
Q ss_pred CCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---cCC-------
Q 002100 782 GLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKA---RNN------- 851 (967)
Q Consensus 782 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~------- 851 (967)
+++-.|+...|..+++..+|+...+. +++-.+.-+..-|.+....|+--...+.++-+-+.. ...
T Consensus 285 ----PEARlNL~iYyL~q~dVqeA~~L~Kd-l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI 359 (557)
T KOG3785|consen 285 ----PEARLNLIIYYLNQNDVQEAISLCKD-LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI 359 (557)
T ss_pred ----hHhhhhheeeecccccHHHHHHHHhh-cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc
Confidence 36778899999999999999987653 445555566667777777777655555554333211 110
Q ss_pred ---HHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH--HHHHHHHHHH
Q 002100 852 ---ASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ--LLHLRAAFHD 926 (967)
Q Consensus 852 ---~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~--~~~~~a~~~~ 926 (967)
...-...-.+.++++-+.++...-..--++....+++|.++...|+|.+|.+.|-+.-...-.+. ....+|.+|.
T Consensus 360 pGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 360 PGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYI 439 (557)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHH
Confidence 00000011225777877777766666667778889999999999999999999987753332233 4456899999
Q ss_pred HcCChHHHHHHHHH
Q 002100 927 SMGDHLHTQRDCEA 940 (967)
Q Consensus 927 ~~g~~~~A~~~~~~ 940 (967)
..++.+-|-..+-+
T Consensus 440 ~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLK 453 (557)
T ss_pred hcCCchHHHHHHHh
Confidence 99999998766543
No 103
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.34 E-value=4.6e-09 Score=111.09 Aligned_cols=305 Identities=16% Similarity=0.107 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCC
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCS 534 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~ 534 (967)
.++.....-|..-+..|+|.+|++...++-+..+......+.. ..+...++ |
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~a-------------------------A~AA~qrg---d 133 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLA-------------------------AEAAQQRG---D 133 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHH-------------------------HHHHHhcc---c
Confidence 3445555677788889999999999998877755333333222 22333444 3
Q ss_pred hHHHHHHHHHhHhhCCCC-chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 535 GKEKMMDLNTATELDPTL-SYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
.+.|-.++.++.+..++. ...+..++.++...+++..|.....++++..| ++..+.....+|...|+|.+......+.
T Consensus 134 ~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L 213 (400)
T COG3071 134 EDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKL 213 (400)
T ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 377777888888884443 45678899999999999999999999999999 9999999999999999999999888877
Q ss_pred HHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHH-HHHHHHhcCCCChHHHHHHHHHHHHh
Q 002100 613 LTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLA-VVHHMLANDPGKSLLRFRQSLLLLRL 691 (967)
Q Consensus 613 l~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~-~~~~~l~~~p~~~~~~~~~g~~~~~~ 691 (967)
-+..--+..-+.+.. -.. |.-+.+......+...+. .++..-..--.++.+....+.-+.+.
T Consensus 214 ~ka~~l~~~e~~~le-----~~a------------~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 214 RKAGLLSDEEAARLE-----QQA------------WEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHccCCChHHHHHHH-----HHH------------HHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHc
Confidence 665332222111100 000 000001000111101111 11111111112233444455556666
Q ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHH
Q 002100 692 NSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQL 771 (967)
Q Consensus 692 g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~ 771 (967)
|+.++|.+..+.+++..-+.. ....++ ....+++..=++..++.++..|+.+
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p------------------------- 328 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDP------------------------- 328 (400)
T ss_pred CChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCCh-------------------------
Confidence 666666666666665543321 111111 1123444555555555555444333
Q ss_pred HHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002100 772 LEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR-AHQGLARVYHLKNQRKAAYDEMTKLIEK 847 (967)
Q Consensus 772 le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~-a~~~la~~~~~~g~~~~A~~~~~~al~~ 847 (967)
..+..||..++..+.|.+|..+|+.|++..+.. .+..+|.++.++|+..+|.+.++.++-.
T Consensus 329 ---------------~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 ---------------LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ---------------hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 788999999999999999999999999976654 8888999999999999999999988754
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.33 E-value=1.9e-11 Score=117.62 Aligned_cols=127 Identities=12% Similarity=-0.024 Sum_probs=111.6
Q ss_pred HHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 002100 538 KMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLD 616 (967)
Q Consensus 538 A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 616 (967)
-...|+++++++|++ ++.+|.++...|++++|+..|++++..+| +..++..+|.++...|++++|+..|++++.++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356788999999885 66789999999999999999999999999 89999999999999999999999999999999
Q ss_pred CCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 002100 617 PSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRL 691 (967)
Q Consensus 617 p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~ 691 (967)
|+++.++ +.++.++...|++++| +..|.++++..|+++..+..++.+...+
T Consensus 89 p~~~~a~------~~lg~~l~~~g~~~eA------------------i~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 89 ASHPEPV------YQTGVCLKMMGEPGLA------------------REAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCCcHHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 9999998 7888999999999998 8999999999999888888777765443
No 105
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=9.4e-12 Score=126.99 Aligned_cols=105 Identities=21% Similarity=0.224 Sum_probs=99.2
Q ss_pred CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 862 CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~ 940 (967)
++|++|+..|.+||+++|+++..|.++|.+|.+.|.++.|++.++.++.++|.+ .+|..+|.+|..+|++++|++.|++
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK 174 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence 678888888999999999999999999999999999999999999999999995 5999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHhhhhhcC
Q 002100 941 ALCLDPNHTDTLELYDKATERVNEQQ 966 (967)
Q Consensus 941 al~~~P~~~~~l~l~~r~~~~~~~~~ 966 (967)
||+++|++....+-+.+++.+..+++
T Consensus 175 aLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 175 ALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred hhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999988776
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.31 E-value=3.4e-11 Score=115.83 Aligned_cols=126 Identities=12% Similarity=0.075 Sum_probs=110.4
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHH
Q 002100 573 ITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLY 652 (967)
Q Consensus 573 ~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~ 652 (967)
...|+++++++|+. ++.+|.++...|++++|+..|++++..+|.+..++ ..++.++...+++++|
T Consensus 13 ~~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~------~~lg~~~~~~g~~~~A------- 77 (144)
T PRK15359 13 EDILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAH------IALAGTWMMLKEYTTA------- 77 (144)
T ss_pred HHHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH------HHHHHHHHHHhhHHHH-------
Confidence 35788888888843 55789999999999999999999999999999888 7788999999999998
Q ss_pred hhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 002100 653 DRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYD 724 (967)
Q Consensus 653 ~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~ 724 (967)
+..|.++++.+|.++..++++|.++...|++++|+..|+++++..|+++..+.++|.+...
T Consensus 78 -----------~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 78 -----------INFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred -----------HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999988888877654
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.31 E-value=2.4e-09 Score=136.44 Aligned_cols=343 Identities=14% Similarity=0.025 Sum_probs=241.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcc-CC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----chHHhhhhhh
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGF-KV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPS-----YMMFYGQLHG 628 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~-~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~-----~~~~~~~~~~ 628 (967)
....+..+...|++..+...+..+-.. .. ++.....+++++...|++++|...+..+...-+. ....... .
T Consensus 377 l~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~--~ 454 (903)
T PRK04841 377 LLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAE--F 454 (903)
T ss_pred HHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHH--H
Confidence 344566677778888766666543111 11 4556678889999999999999999988765322 1111111 1
Q ss_pred hhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh-----HHHHHHHHHHHHhcCHHHHHHHHHH
Q 002100 629 DNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS-----LLRFRQSLLLLRLNSQKAAMRSLRL 703 (967)
Q Consensus 629 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~-----~~~~~~g~~~~~~g~~~~A~~~l~~ 703 (967)
...++.++...+++++| ...+.++++..|... .....+|.++...|++++|...+++
T Consensus 455 ~~~~a~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~ 516 (903)
T PRK04841 455 NALRAQVAINDGDPEEA------------------ERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQ 516 (903)
T ss_pred HHHHHHHHHhCCCHHHH------------------HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 13456677777788777 777777776544322 3456788889999999999999999
Q ss_pred HHhcCCc------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhc
Q 002100 704 ARNYSTS------EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALR 777 (967)
Q Consensus 704 al~~~p~------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~ 777 (967)
++..... ...++..+|.++...|++++|...+++++.+.....
T Consensus 517 al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~------------------------------- 565 (903)
T PRK04841 517 TEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH------------------------------- 565 (903)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc-------------------------------
Confidence 9865332 124567789999999999999999999986533110
Q ss_pred CCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc----Cc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002100 778 CPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI----KH---TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 778 ~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~----~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 850 (967)
....+.....+..+|.++...|++++|...+.+++.. .+ ..++..+|.++...|++++|...+.++....+.
T Consensus 566 -~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~ 644 (903)
T PRK04841 566 -LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGN 644 (903)
T ss_pred -cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 0001112234567899999999999999999999872 11 226777999999999999999999999876443
Q ss_pred CH---HHH--------HHHHccCChHHHHHHHHHhhccCCCCchH----HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-
Q 002100 851 NA---SAY--------EKRSEYCDRDMAKSDLSMATQLDPMRTYP----YRYRAAVLMDDHKEAEAIAELSRAIAFKPD- 914 (967)
Q Consensus 851 ~~---~~~--------~~~~~~~~~~~A~~~l~~al~l~p~~~~~----~~~la~~~~~~g~~~eAi~~~~kal~~~p~- 914 (967)
.. ... ......++.+.|...+.......+..... +..+|.++...|++++|+..++++++....
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~ 724 (903)
T PRK04841 645 GRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL 724 (903)
T ss_pred ccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 21 110 11112378888888887766533332222 467899999999999999999999875322
Q ss_pred ------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchh
Q 002100 915 ------LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTD 950 (967)
Q Consensus 915 ------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~ 950 (967)
..++..+|.++...|+.++|...+++|+++.....-
T Consensus 725 g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 725 RLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 136778999999999999999999999998865433
No 108
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.30 E-value=2.2e-07 Score=103.25 Aligned_cols=410 Identities=14% Similarity=0.059 Sum_probs=263.6
Q ss_pred HHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC---ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 002100 541 DLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV---SPDCLELRAWISIALEDYDGALRDVRALLTLDP 617 (967)
Q Consensus 541 ~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 617 (967)
.|++++-.--+-+..|......++.+++...-...|++++..-| ....|-..-......+-.+-++..|++-|+++|
T Consensus 90 c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P 169 (835)
T KOG2047|consen 90 CFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP 169 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH
Confidence 34444443334566677777777777887777777877777777 344555555555666667777777888777777
Q ss_pred CchHHhhhhhhhhhHhhhHHHhhchhhH----------------------hhHHHHHhhhccccc----cchHHHHHHHH
Q 002100 618 SYMMFYGQLHGDNLVETLQPLVQQWSQA----------------------DCWMQLYDRWSSVDD----IGSLAVVHHML 671 (967)
Q Consensus 618 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A----------------------~~~~~l~~~~~~~d~----~~al~~~~~~l 671 (967)
....-+.. .....+++++| .-|.++.+..++..+ ...-+.++..+
T Consensus 170 ~~~eeyie---------~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 170 EAREEYIE---------YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI 240 (835)
T ss_pred HHHHHHHH---------HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence 76544411 11222333333 134444443332211 12234455666
Q ss_pred hcCCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---hhHH-----HHHHHHHHHHcC-------------ChH
Q 002100 672 ANDPGK-SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS---EHEK-----LVYEGWILYDTG-------------HRE 729 (967)
Q Consensus 672 ~~~p~~-~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~---~~~a-----~~~lg~~~~~~g-------------~~~ 729 (967)
...++. ..+|..+|..|.+.|.++.|...|++++..--. .... .+..-.+...++ +.+
T Consensus 241 ~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~ 320 (835)
T KOG2047|consen 241 RRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLE 320 (835)
T ss_pred ccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHH
Confidence 666654 457888999999999999999999999875332 1111 111111111111 344
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHhh-----------hcCCCCCchHHHHHHHHHHhcCCCCC---CchHHHHHHhHHH
Q 002100 730 EALAKAEESISIQRSFEAFFLKAYALA-----------DSSLNPESSAYVIQLLEEALRCPSDG---LRKGQALNNLGSV 795 (967)
Q Consensus 730 eA~~~~~~al~~~p~~~~~~~~~~~la-----------~~~~~~~~~~~a~~~le~~~~~~~~~---~~~~~a~~~lg~~ 795 (967)
-....|+..++..|-.. ....|. ...+..+...+.++.+.++.+..... ......|..+|..
T Consensus 321 ~~~a~~e~lm~rr~~~l----NsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fakl 396 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLL----NSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKL 396 (835)
T ss_pred HHHHHHHHHHhccchHH----HHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHH
Confidence 45666777666655211 111111 11122344556667777776654332 3345678899999
Q ss_pred HHhcccHHHHHHHHHHHhccCcH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC------------------C
Q 002100 796 YVDCEKLDLAADCYMNALNIKHT------RAHQGLARVYHLKNQRKAAYDEMTKLIEKARN------------------N 851 (967)
Q Consensus 796 ~~~~g~~~~A~~~~~~Al~~~~~------~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------~ 851 (967)
|...|+.+.|...|++|++..-. .+|..-|..-....+++.|++.++++.....+ .
T Consensus 397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS 476 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS 476 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh
Confidence 99999999999999999994322 37888888999999999999999988754222 1
Q ss_pred HHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh---H---HHHHH
Q 002100 852 ASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL---Q---LLHLR 921 (967)
Q Consensus 852 ~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~---~---~~~~~ 921 (967)
..+|..... +|-++.....|++.+++.--.|....+.|..+....-+++|-+.|++-+.+-+-+ + .|...
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 112222222 2788888899999999988889999999999999999999999999999887653 2 23333
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCC-ch-hHHHHHHHHHhhhh
Q 002100 922 AAFHDSMGDHLHTQRDCEAALCLDPN-HT-DTLELYDKATERVN 963 (967)
Q Consensus 922 a~~~~~~g~~~~A~~~~~~al~~~P~-~~-~~l~l~~r~~~~~~ 963 (967)
......--+.+.|...|++||+..|. +. .+.-+|.++++..+
T Consensus 557 fi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~G 600 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHG 600 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 33444445789999999999998873 22 23456777776643
No 109
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.30 E-value=3.1e-11 Score=126.22 Aligned_cols=284 Identities=17% Similarity=0.131 Sum_probs=188.3
Q ss_pred HHHHHHhcCcHHHHHHHHHHHhccCC-C----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHh
Q 002100 559 RAILLVEENKLAAAITEINRIIGFKV-S----PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVE 633 (967)
Q Consensus 559 la~~~~~~g~~~~A~~~~~~al~~~p-~----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 633 (967)
-|.-+.+.|++...+..|+.|++... + ..+|..+|..|+-++||++|+++..--|.+.
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltla----------------- 85 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLA----------------- 85 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHH-----------------
Confidence 35566777777777777777777655 2 3356666666666666666665433222110
Q ss_pred hhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----
Q 002100 634 TLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYST---- 709 (967)
Q Consensus 634 ~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p---- 709 (967)
+.+...-.....--++|..+--.|.|++|+.++.+-+....
T Consensus 86 -----------------------------------r~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgD 130 (639)
T KOG1130|consen 86 -----------------------------------RLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGD 130 (639)
T ss_pred -----------------------------------HHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhH
Confidence 00110111112234577788888999999988777665432
Q ss_pred --chhHHHHHHHHHHHHcCC-------------hHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHH
Q 002100 710 --SEHEKLVYEGWILYDTGH-------------REEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEE 774 (967)
Q Consensus 710 --~~~~a~~~lg~~~~~~g~-------------~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~ 774 (967)
....+++++|.+|...|+ .+++...++.|++... ....+.
T Consensus 131 rv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~-------eNL~l~------------------ 185 (639)
T KOG1130|consen 131 RVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM-------ENLELS------------------ 185 (639)
T ss_pred HHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH-------HHHHHH------------------
Confidence 235689999999987764 2344444555442221 111111
Q ss_pred HhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002100 775 ALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH--------TRAHQGLARVYHLKNQRKAAYDEMTKLIE 846 (967)
Q Consensus 775 ~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--------~~a~~~la~~~~~~g~~~~A~~~~~~al~ 846 (967)
+...+....+.++-+||..|+-+|+|+.|+..-+.-+.+.. ..++.++|.+|.-+|+++.|++.|++.+.
T Consensus 186 --~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 186 --EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred --HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 11122234457899999999999999999998877666322 23899999999999999999999998876
Q ss_pred HccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-------hHHHH
Q 002100 847 KARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-------LQLLH 919 (967)
Q Consensus 847 ~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-------~~~~~ 919 (967)
+.-. + =++.+ .+...+.+|..|.-..++++||.++.+-+.+... ..+++
T Consensus 264 LAie----------l---------g~r~v-----EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Racw 319 (639)
T KOG1130|consen 264 LAIE----------L---------GNRTV-----EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACW 319 (639)
T ss_pred HHHH----------h---------cchhH-----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 4321 1 11111 1344567899999999999999999998776544 23788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 920 LRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 920 ~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
.+|.++-.+|..++|+...++.+++.
T Consensus 320 SLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 320 SLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 89999999999999999988887654
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.30 E-value=1.1e-10 Score=118.64 Aligned_cols=158 Identities=18% Similarity=0.162 Sum_probs=132.3
Q ss_pred HHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHH
Q 002100 793 GSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAK 868 (967)
Q Consensus 793 g~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~ 868 (967)
+..|+..|+++......++...... -+...++.++++..++++++.+|++..+|..+|.. +++++|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4568888988887655543333211 11126778999999999999999999999999953 9999999
Q ss_pred HHHHHhhccCCCCchHHHHHHHHH-HhCCC--HHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 869 SDLSMATQLDPMRTYPYRYRAAVL-MDDHK--EAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCL 944 (967)
Q Consensus 869 ~~l~~al~l~p~~~~~~~~la~~~-~~~g~--~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 944 (967)
..|+++++++|+++.++..+|.++ ...|+ +++|+..++++++.+|+ ..++.++|..++..|++++|+..|++++++
T Consensus 94 ~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 94 LAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999975 67777 59999999999999998 469999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHH
Q 002100 945 DPNHTDTLELYDKAT 959 (967)
Q Consensus 945 ~P~~~~~l~l~~r~~ 959 (967)
.|.+.+-..++..++
T Consensus 174 ~~~~~~r~~~i~~i~ 188 (198)
T PRK10370 174 NSPRVNRTQLVESIN 188 (198)
T ss_pred CCCCccHHHHHHHHH
Confidence 988776666654444
No 111
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.29 E-value=3.7e-08 Score=113.29 Aligned_cols=281 Identities=13% Similarity=0.051 Sum_probs=196.1
Q ss_pred chHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHH--HHHHHHHHhcC-----ChHHHH
Q 002100 437 NTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSL--VGVARTKFKRG-----HKYSAY 509 (967)
Q Consensus 437 ~~~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~--~~la~~~~~~g-----~~~~A~ 509 (967)
....+.|+.|.+....-.++...+-..|.++++.|++++|...|...++.+|.... .++..+..... ....-.
T Consensus 18 g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~ 97 (517)
T PF12569_consen 18 GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLL 97 (517)
T ss_pred CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHH
Confidence 34455666666666666777778888999999999999999999999999984433 34444432222 345667
Q ss_pred HHHHHHHhccCcchhHHHHHhhcCCh---H-HHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHh---cc
Q 002100 510 KLMNSLISDYTPVGWMYQERSLYCSG---K-EKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRII---GF 582 (967)
Q Consensus 510 ~~l~~~i~~~~~~g~~~~~~~~y~~~---~-~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~ 582 (967)
.+|.++...||.....-...-.+..+ . .+..++...+. ..-+..+..+-.+|....+..-....+...+ +.
T Consensus 98 ~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~--KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~ 175 (517)
T PF12569_consen 98 ELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLR--KGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLES 175 (517)
T ss_pred HHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcc
Confidence 77888877776432221111111111 2 22233333332 2344445555445543333332222222222 11
Q ss_pred -------------CCC--hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhh
Q 002100 583 -------------KVS--PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADC 647 (967)
Q Consensus 583 -------------~p~--~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~ 647 (967)
.|. ..+++.+|+.|...|++++|+..++++|+..|..+..+ ...+.++.+.|++.+|
T Consensus 176 ~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely------~~KarilKh~G~~~~A-- 247 (517)
T PF12569_consen 176 NGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELY------MTKARILKHAGDLKEA-- 247 (517)
T ss_pred cCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHH------HHHHHHHHHCCCHHHH--
Confidence 122 34778999999999999999999999999999999999 8889999999999999
Q ss_pred HHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchh-------HHH--HHH
Q 002100 648 WMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEH-------EKL--VYE 718 (967)
Q Consensus 648 ~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~-------~a~--~~l 718 (967)
...++.+-.+|+.+-.+-...+..+++.|+.++|...+......+.+.. -.| ...
T Consensus 248 ----------------a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~ 311 (517)
T PF12569_consen 248 ----------------AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETEC 311 (517)
T ss_pred ----------------HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999888766552111 123 346
Q ss_pred HHHHHHcCChHHHHHHHHHHHhccc
Q 002100 719 GWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 719 g~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
|.+|.+.|++..|++.|....+...
T Consensus 312 a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 312 AEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 8999999999999999998886654
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.28 E-value=9.1e-10 Score=131.52 Aligned_cols=183 Identities=9% Similarity=-0.025 Sum_probs=154.5
Q ss_pred ccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhcccc
Q 002100 581 GFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVD 659 (967)
Q Consensus 581 ~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d 659 (967)
..+| +..++..+...|...+++++|+..++.+++.+|+...++ +..|.++.+.++++++
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~y------y~~G~l~~q~~~~~~~-------------- 84 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISAL------YISGILSLSRRPLNDS-------------- 84 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehH------HHHHHHHHhhcchhhh--------------
Confidence 3456 789999999999999999999999999999999999999 8888899998887777
Q ss_pred ccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 660 DIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 660 ~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
..+ .++...+. ..++ .++..+-..+...+++..+++.+|.+|-++|+.++|...|++++
T Consensus 85 ----~lv--~~l~~~~~--------------~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L 143 (906)
T PRK14720 85 ----NLL--NLIDSFSQ--------------NLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLV 143 (906)
T ss_pred ----hhh--hhhhhccc--------------ccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 222 44444333 2344 56666666777788888899999999999999999999999999
Q ss_pred hcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH
Q 002100 740 SIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR 819 (967)
Q Consensus 740 ~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 819 (967)
+.+|++. .+++++|..|... ++++|+.++.+|+..
T Consensus 144 ~~D~~n~----------------------------------------~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---- 178 (906)
T PRK14720 144 KADRDNP----------------------------------------EIVKKLATSYEEE-DKEKAITYLKKAIYR---- 178 (906)
T ss_pred hcCcccH----------------------------------------HHHHHHHHHHHHh-hHHHHHHHHHHHHHH----
Confidence 9999777 8999999999999 999999999999764
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHH
Q 002100 820 AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEK 857 (967)
Q Consensus 820 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 857 (967)
+...+++.++.+.+.+.++.+|.+.+.+..
T Consensus 179 --------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~ 208 (906)
T PRK14720 179 --------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLR 208 (906)
T ss_pred --------HHhhhcchHHHHHHHHHHhcCcccchHHHH
Confidence 667779999999999999999987665433
No 113
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.28 E-value=8.9e-09 Score=131.31 Aligned_cols=382 Identities=13% Similarity=-0.017 Sum_probs=250.8
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCc-hhHHHHHHHHHHhcCChHHHHHHHHHHHh----ccCc----chhH
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH-IYSLVGVARTKFKRGHKYSAYKLMNSLIS----DYTP----VGWM 525 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~-~~a~~~la~~~~~~g~~~~A~~~l~~~i~----~~~~----~g~~ 525 (967)
+....+...+..+...|++.+|..++..+-.... .......+......|+.......+..+-. ..+. .+++
T Consensus 339 ~~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~ 418 (903)
T PRK04841 339 ELPELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWL 418 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHH
Confidence 3445566778888899999999886654422211 12223345566677887776666655421 1221 2344
Q ss_pred HHHHhhcCChHHHHHHHHHhHhhCCC---------CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC--C----hhHHH
Q 002100 526 YQERSLYCSGKEKMMDLNTATELDPT---------LSYPYKYRAILLVEENKLAAAITEINRIIGFKV--S----PDCLE 590 (967)
Q Consensus 526 ~~~~~~y~~~~~A~~~~~~al~l~P~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~ 590 (967)
+...+ +.++|...+..+....+. .......++.++...|++++|...+++++...+ + ..+..
T Consensus 419 ~~~~g---~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 419 AQSQH---RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHHCC---CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 44444 458999998888765332 123445678888999999999999999988655 2 23567
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHH
Q 002100 591 LRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHM 670 (967)
Q Consensus 591 ~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~ 670 (967)
.+|.++...|++++|...+++++..................++.++...|+++.| ...+.++
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A------------------~~~~~~a 557 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAA------------------YETQEKA 557 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHH------------------HHHHHHH
Confidence 8899999999999999999999987443322221112235667888888999988 4555554
Q ss_pred HhcC--------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----chhHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 671 LAND--------PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYST-----SEHEKLVYEGWILYDTGHREEALAKAEE 737 (967)
Q Consensus 671 l~~~--------p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p-----~~~~a~~~lg~~~~~~g~~~eA~~~~~~ 737 (967)
+... +.....+..+|.++...|++++|...+++++.... .....+..+|.++...|++++|...+.+
T Consensus 558 l~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 558 FQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4431 11223455778899999999999999999877532 2345667789999999999999999999
Q ss_pred HHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc
Q 002100 738 SISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH 817 (967)
Q Consensus 738 al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~ 817 (967)
+..+.+.... ... ............+...|+.+.|..++........
T Consensus 638 a~~~~~~~~~-----------------~~~----------------~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~ 684 (903)
T PRK04841 638 LENLLGNGRY-----------------HSD----------------WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF 684 (903)
T ss_pred HHHHHhcccc-----------------cHh----------------HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC
Confidence 8765431110 000 0000111112444567889999998877665321
Q ss_pred HH------HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHH
Q 002100 818 TR------AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAV 891 (967)
Q Consensus 818 ~~------a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~ 891 (967)
.. .+..+|.++...|++++|...++++++...... .......++..+|.+
T Consensus 685 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g------------------------~~~~~a~~~~~la~a 740 (903)
T PRK04841 685 ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLR------------------------LMSDLNRNLILLNQL 740 (903)
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC------------------------chHHHHHHHHHHHHH
Confidence 11 356799999999999999999999887543210 111223445567777
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCC
Q 002100 892 LMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 892 ~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
+...|+.++|...+.++++....
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHhCc
Confidence 77777777777777777776544
No 114
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=7.7e-10 Score=111.49 Aligned_cols=348 Identities=14% Similarity=0.117 Sum_probs=204.2
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
..|++.+..-.+.+|.+-..+..+|-+|+...+|..|-++|++.-...| .....+..|...++.+.+..|+........
T Consensus 27 ~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 27 ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD 106 (459)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 7777777777777777777777777777777777777777777777777 555566667777777777777766554432
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCC--CChHHHHHHHHHHHHhc
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDP--GKSLLRFRQSLLLLRLN 692 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p--~~~~~~~~~g~~~~~~g 692 (967)
. .....+.. .+.+-+ .++..|..++-. .++.-| +......+.|-+.++.|
T Consensus 107 ~----~~L~~~~l--qLqaAI------------------kYse~Dl~g~rs----LveQlp~en~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 107 N----PALHSRVL--QLQAAI------------------KYSEGDLPGSRS----LVEQLPSENEADGQINLGCLLYKEG 158 (459)
T ss_pred C----HHHHHHHH--HHHHHH------------------hcccccCcchHH----HHHhccCCCccchhccchheeeccc
Confidence 1 11111100 111111 122222223333 333345 34566777888888889
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcc----cchHHHHHHHHHhhhcCCCCCchHHH
Q 002100 693 SQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQ----RSFEAFFLKAYALADSSLNPESSAYV 768 (967)
Q Consensus 693 ~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~----p~~~~~~~~~~~la~~~~~~~~~~~a 768 (967)
++++|++-|+.+++...-++..-++++.++++.|+++.|+++..+.++.. |...
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElg---------------------- 216 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELG---------------------- 216 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC----------------------
Confidence 99999999999988888888888888999999999998888887766432 2111
Q ss_pred HHHHHHHhcCCCCC--------------CchHHHHHHhHHHHHhcccHHHHHHHHHHHhc-----cCcHHHHHHHHHHHH
Q 002100 769 IQLLEEALRCPSDG--------------LRKGQALNNLGSVYVDCEKLDLAADCYMNALN-----IKHTRAHQGLARVYH 829 (967)
Q Consensus 769 ~~~le~~~~~~~~~--------------~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-----~~~~~a~~~la~~~~ 829 (967)
+-...+. ....++++..+.++++.++++.|.+.+...-- .+|. .+.++|..-
T Consensus 217 -------IGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv-TLHN~Al~n- 287 (459)
T KOG4340|consen 217 -------IGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV-TLHNQALMN- 287 (459)
T ss_pred -------ccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch-hhhHHHHhc-
Confidence 0011111 11235666677888888888888776643211 2222 444555432
Q ss_pred HhCCHHHHHHHHHHHHHHccCCHHHHHHHHc-cC---ChHHHHHHHHHhhccCCCCchH-----HHHHHHHHH-hCCCH-
Q 002100 830 LKNQRKAAYDEMTKLIEKARNNASAYEKRSE-YC---DRDMAKSDLSMATQLDPMRTYP-----YRYRAAVLM-DDHKE- 898 (967)
Q Consensus 830 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-~~---~~~~A~~~l~~al~l~p~~~~~-----~~~la~~~~-~~g~~- 898 (967)
..+++.+..+-++-.++.+|--.+.+.++-. ++ -++.|...+ ..+|+..+. .+++-..++ -.-..
T Consensus 288 ~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL----AEn~~lTyk~L~~Yly~LLdaLIt~qT~pE 363 (459)
T KOG4340|consen 288 MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL----AENAHLTYKFLTPYLYDLLDALITCQTAPE 363 (459)
T ss_pred ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH----hhCcchhHHHhhHHHHHHHHHHHhCCCCHH
Confidence 2356677777778888888855544443331 21 122222221 112221110 111111111 11122
Q ss_pred ------------------------------------HHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 899 ------------------------------------AEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAAL 942 (967)
Q Consensus 899 ------------------------------------~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al 942 (967)
..|++.|++++++. ..++..+|++|+...||..+.+.|++..
T Consensus 364 ea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y--LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sv 441 (459)
T KOG4340|consen 364 EAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY--LPVLMAQAKIYWNLEDYPMVEKIFRKSV 441 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 23333444444332 2356678999999999999999999988
Q ss_pred hcCCCc
Q 002100 943 CLDPNH 948 (967)
Q Consensus 943 ~~~P~~ 948 (967)
+...+|
T Consensus 442 efC~eh 447 (459)
T KOG4340|consen 442 EFCNDH 447 (459)
T ss_pred hhhccc
Confidence 766544
No 115
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.27 E-value=7.9e-11 Score=123.27 Aligned_cols=285 Identities=13% Similarity=0.039 Sum_probs=192.6
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCC----chhHHHHHHHHHhcCcHHHHHHHHH------HHhccCC-ChhHHHH
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTL----SYPYKYRAILLVEENKLAAAITEIN------RIIGFKV-SPDCLEL 591 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~----~~~~~~la~~~~~~g~~~~A~~~~~------~al~~~p-~~~~~~~ 591 (967)
|.-+.+.+.+ ...+..|+.|++.-.++ ...|..+|.+|+..++|++|+++-. +.+...- ....--+
T Consensus 24 GERLck~gdc---raGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 24 GERLCKMGDC---RAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHhccch---hhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 5556666655 99999999999986654 4578899999999999999998643 3333333 5668889
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHH
Q 002100 592 RAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHML 671 (967)
Q Consensus 592 la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l 671 (967)
+|.++-.+|.|++|+.+..+-|.+..+-.+-.....+.|+++.+|...|+...- ...++.
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~----------~~pee~---------- 160 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL----------EAPEEK---------- 160 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC----------CChhhc----------
Confidence 999999999999999999999887666555555555555566665554333222 000000
Q ss_pred hcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccch
Q 002100 672 ANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS------EHEKLVYEGWILYDTGHREEALAKAEESISIQRSF 745 (967)
Q Consensus 672 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 745 (967)
...|. .+ ...++.|.+.|..-+++... ...++-++|..|+.+|+|+.|+..-+.-+.+...+
T Consensus 161 g~f~~--ev----------~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef 228 (639)
T KOG1130|consen 161 GAFNA--EV----------TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF 228 (639)
T ss_pred ccccH--HH----------HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh
Confidence 00000 00 11233444555444433222 23467789999999999999999999888776654
Q ss_pred HHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc----cCcH---
Q 002100 746 EAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN----IKHT--- 818 (967)
Q Consensus 746 ~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----~~~~--- 818 (967)
. +++. ...++.|+|.+|.-.|+++.|+++|++.+. ++..
T Consensus 229 G-------------------DrAa---------------eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 229 G-------------------DRAA---------------ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred h-------------------hHHH---------------HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 4 1111 126899999999999999999999998766 3332
Q ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCC------HHHHHHHHc----cCChHHHHHHHHHhhc
Q 002100 819 -RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNN------ASAYEKRSE----YCDRDMAKSDLSMATQ 876 (967)
Q Consensus 819 -~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~----~~~~~~A~~~l~~al~ 876 (967)
...+.||..|....++++|+.++.+-+.+.... ..++..+|. +|..++|+...++.++
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 267889999999999999999999887766532 223333332 2555555555554443
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.24 E-value=2.5e-10 Score=115.96 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=102.8
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHH-HHcCC--hHHHHHHHHHHH
Q 002100 663 SLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWIL-YDTGH--REEALAKAEESI 739 (967)
Q Consensus 663 al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~-~~~g~--~~eA~~~~~~al 739 (967)
.+..+.++++.+|+++..|+.+|.+|...|++++|+..|+++++++|+++..+..+|.++ ...|+ +++|.+.+++++
T Consensus 58 ~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al 137 (198)
T PRK10370 58 QLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKAL 137 (198)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 378889999999999999999999999999999999999999999999999999999875 67677 589999999999
Q ss_pred hcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH
Q 002100 740 SIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT 818 (967)
Q Consensus 740 ~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~ 818 (967)
+.+|++. .+++++|..++..|++++|+.+|+++++..++
T Consensus 138 ~~dP~~~----------------------------------------~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 138 ALDANEV----------------------------------------TALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HhCCCCh----------------------------------------hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999766 78899999999999999999999999985554
No 117
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.23 E-value=3e-06 Score=94.52 Aligned_cols=313 Identities=13% Similarity=0.048 Sum_probs=202.3
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhH--hhHHHHHhhhc-cc----c
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQA--DCWMQLYDRWS-SV----D 659 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A--~~~~~l~~~~~-~~----d 659 (967)
..+..+|..|...|.+++|...|++++..--...++- .++..--+|++. ..-|++.+.++ .. |
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt----------~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~d 318 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFT----------QIFDAYAQFEESCVAAKMELADEESGNEEDDVD 318 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHH----------HHHHHHHHHHHHHHHHHHhhhhhcccChhhhhh
Confidence 3567789999999999999999999997632221111 111111111111 00011100000 00 0
Q ss_pred ccchHHHHH------------HHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCCch-----hHHHHHHHHH
Q 002100 660 DIGSLAVVH------------HMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARN-YSTSE-----HEKLVYEGWI 721 (967)
Q Consensus 660 ~~~al~~~~------------~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~-~~p~~-----~~a~~~lg~~ 721 (967)
-.-.+..++ -++..+|++..-|..+..+ ..+++.+-+..|..|++ .+|.- ...|..+|..
T Consensus 319 l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fakl 396 (835)
T KOG2047|consen 319 LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKL 396 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHH
Confidence 001122222 3455677777766655544 35778888888888875 45543 3568889999
Q ss_pred HHHcCChHHHHHHHHHHHhcccchHHHH-HHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCC---------------Cch
Q 002100 722 LYDTGHREEALAKAEESISIQRSFEAFF-LKAYALADSSLNPESSAYVIQLLEEALRCPSDG---------------LRK 785 (967)
Q Consensus 722 ~~~~g~~~eA~~~~~~al~~~p~~~~~~-~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~---------------~~~ 785 (967)
|...|+.+.|...|+++....-...... ......|+.-+..+..+.+..+++.+...|... ...
T Consensus 397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS 476 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS 476 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh
Confidence 9999999999999999987764332222 222355666777778888888888887766542 122
Q ss_pred HHHHHHhHHHHHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc--CCHHHHHHHH--
Q 002100 786 GQALNNLGSVYVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKAR--NNASAYEKRS-- 859 (967)
Q Consensus 786 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~-- 859 (967)
...|..+++.....|-++.-...|++.++ +..+....+.|..+.....+++|.+.|++.|.+.+ +-.+.|...-
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 34566667777788888888899999888 55667888899999999999999999999988764 4344443322
Q ss_pred ---cc--CChHHHHHHHHHhhccCCCCc--hHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 002100 860 ---EY--CDRDMAKSDLSMATQLDPMRT--YPYRYRAAVLMDDHKEAEAIAELSRAIAF 911 (967)
Q Consensus 860 ---~~--~~~~~A~~~l~~al~l~p~~~--~~~~~la~~~~~~g~~~eAi~~~~kal~~ 911 (967)
.| ...+.|...|++|++..|... ..+...|..-.+-|--..|++.|++|-..
T Consensus 557 fi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 34 467899999999999887322 23444455555557777777777776543
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.19 E-value=1.2e-09 Score=109.88 Aligned_cols=179 Identities=14% Similarity=0.059 Sum_probs=166.8
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
..+...+-+....+|++..+ ..++..+...|+-+.+.....++....| +.+.+..+|...+..|+|.+|+..++++..
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 55777777888899999999 9999999999999999999999888888 888888899999999999999999999999
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCH
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQ 694 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~ 694 (967)
++|++..++ ..++.+|.+.|+++.| -..|.+++++.|.++.+..++|..|.-.|++
T Consensus 129 l~p~d~~~~------~~lgaaldq~Gr~~~A------------------r~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 129 LAPTDWEAW------NLLGAALDQLGRFDEA------------------RRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred cCCCChhhh------hHHHHHHHHccChhHH------------------HHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 999999999 7889999999999999 6889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 695 KAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 695 ~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
+.|...+..+....+.+..+..+++.+....|++++|.....+-+
T Consensus 185 ~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 185 EDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 999999999999999999999999999999999999998776543
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.18 E-value=2.6e-10 Score=109.03 Aligned_cols=123 Identities=16% Similarity=0.106 Sum_probs=102.1
Q ss_pred HHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-
Q 002100 840 EMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD- 914 (967)
Q Consensus 840 ~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~- 914 (967)
.++++++.+|++..+...++. .+++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 455666666666666655553 266667777777777778888899999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 915 LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 915 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
...++.+|.++..+|++++|+..|+++++++|++.....+..++.+..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999888888776643
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.17 E-value=2e-09 Score=128.21 Aligned_cols=153 Identities=12% Similarity=0.043 Sum_probs=121.3
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
+..........|.++.+++.+|.+..+.|.+++|...++.+++..|++..++.+++.++.+.+++++|+..+++++..+|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p 151 (694)
T PRK15179 72 LPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS 151 (694)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC
Confidence 44455555667888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred chHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHH
Q 002100 744 SFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAH 821 (967)
Q Consensus 744 ~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~ 821 (967)
++. .+++.+|.++.+.|++++|+.+|++++.. ++..++
T Consensus 152 ~~~----------------------------------------~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~ 191 (694)
T PRK15179 152 SSA----------------------------------------REILLEAKSWDEIGQSEQADACFERLSRQHPEFENGY 191 (694)
T ss_pred CCH----------------------------------------HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHH
Confidence 666 67888888888888888888888888863 344688
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHH
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYE 856 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 856 (967)
.++|.++...|+.++|...|+++++...+-...|.
T Consensus 192 ~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 192 VGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 88888888888888888888888877665444433
No 121
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=1.4e-10 Score=118.48 Aligned_cols=101 Identities=21% Similarity=0.256 Sum_probs=94.8
Q ss_pred CcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHH
Q 002100 520 TPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIA 598 (967)
Q Consensus 520 ~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~ 598 (967)
+..|.-..+-++| .+|+..|.+||+++|+++..|.++|.+|.++|.++.|++.++.++.++| ...+|..+|.+|+.
T Consensus 85 K~eGN~~m~~~~Y---~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 85 KNEGNKLMKNKDY---QEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHhhhH---HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 3446666777777 9999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 599 LEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 599 ~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
+|++++|++.|+++|+++|++....
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYK 186 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHH
Confidence 9999999999999999999999776
No 122
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=1.8e-08 Score=101.87 Aligned_cols=175 Identities=14% Similarity=0.108 Sum_probs=129.5
Q ss_pred cccchHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHH--HHHHHHHHhcCChHHHHHH
Q 002100 434 MKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSL--VGVARTKFKRGHKYSAYKL 511 (967)
Q Consensus 434 ~~~~~~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~--~~la~~~~~~g~~~~A~~~ 511 (967)
.+...+.+++.. ..+..+....++..||.+|+...+|..|-+||++.-..-|.++. .+.|...++.+.+..|..+
T Consensus 24 ~ry~DaI~~l~s---~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 24 ARYADAIQLLGS---ELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred hhHHHHHHHHHH---HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 344555555544 33445556667889999999999999999999999999886554 4567888889999999988
Q ss_pred HHHHHhccCcchhHHHHHh--hcC--ChHHHHHHHHHhHhhCC--CCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-
Q 002100 512 MNSLISDYTPVGWMYQERS--LYC--SGKEKMMDLNTATELDP--TLSYPYKYRAILLVEENKLAAAITEINRIIGFKV- 584 (967)
Q Consensus 512 l~~~i~~~~~~g~~~~~~~--~y~--~~~~A~~~~~~al~l~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p- 584 (967)
...+.+.-.-...+.+... .|. |...+. ..++.-| +.+....+.|-+.++.|+|++|++-|+.+++...
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~r----sLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy 176 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSR----SLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY 176 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchH----HHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCC
Confidence 8777664211122222221 232 222222 2233334 5677888999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 585 SPDCLELRAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 585 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 615 (967)
++-.-+.+|.++++.++++.|++....+++.
T Consensus 177 qpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 177 QPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 8888999999999999999999998888765
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.14 E-value=9.5e-10 Score=130.91 Aligned_cols=155 Identities=12% Similarity=-0.058 Sum_probs=96.4
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
.+++..+.......|.++.+++.+|.+....|++++|...++.++++.| +..+...++.++.+++++++|+..+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 3444444444445566666666666666666666666666666666666 566666666666666666666666666666
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCH
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQ 694 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~ 694 (967)
.+|++..++ ++++.+...+|+|++| +..|++++..+|+.+.++..+|.++...|+.
T Consensus 149 ~~p~~~~~~------~~~a~~l~~~g~~~~A------------------~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 149 GGSSSAREI------LLEAKSWDEIGQSEQA------------------DACFERLSRQHPEFENGYVGWAQSLTRRGAL 204 (694)
T ss_pred cCCCCHHHH------HHHHHHHHHhcchHHH------------------HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 666666666 5556666666666666 5666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhcCCchhHH
Q 002100 695 KAAMRSLRLARNYSTSEHEK 714 (967)
Q Consensus 695 ~~A~~~l~~al~~~p~~~~a 714 (967)
++|...|+++++....-...
T Consensus 205 ~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 205 WRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHHHHHhhCcchHH
Confidence 66666666666655443333
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=8.2e-08 Score=95.64 Aligned_cols=214 Identities=16% Similarity=0.091 Sum_probs=151.6
Q ss_pred HHHHhccCcccccchHHHHHHHHHHHhh---hchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHH
Q 002100 424 FLSQIGMEEDMKSNTTVMLLERLVESAT---ESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKF 500 (967)
Q Consensus 424 ~l~~l~~~~~~~~~~~~~ll~~l~~~~~---~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~ 500 (967)
+..|-.. ...+++..+++-..+..-.. ..++....+-++..+.+..++.+-|..|+++....-|.....+ +++
T Consensus 17 ~~~wr~~-~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~--~lk- 92 (289)
T KOG3060|consen 17 MRKWREE-TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVG--KLK- 92 (289)
T ss_pred HHHHHhc-cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHH--HHH-
Confidence 3355432 24455555555555443322 2345556666777788888999999999988776655433333 111
Q ss_pred hcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHh
Q 002100 501 KRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRII 580 (967)
Q Consensus 501 ~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 580 (967)
+..+...+.| ++|++.|+..++.||++..++...-.+...+|+--+||+.+...+
T Consensus 93 ----------------------am~lEa~~~~---~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL 147 (289)
T KOG3060|consen 93 ----------------------AMLLEATGNY---KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYL 147 (289)
T ss_pred ----------------------HHHHHHhhch---hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4455566666 899999999999999999999988888899999999999999999
Q ss_pred ccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhcccc
Q 002100 581 GFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVD 659 (967)
Q Consensus 581 ~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d 659 (967)
+..+ +.++|..++.+|+..|+|++|.-++++.+-..|-++..+.+ ++.+++..+.-+.-
T Consensus 148 ~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~r------lae~~Yt~gg~eN~-------------- 207 (289)
T KOG3060|consen 148 DKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQR------LAEVLYTQGGAENL-------------- 207 (289)
T ss_pred HHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHH------HHHHHHHHhhHHHH--------------
Confidence 9988 89999999999999999999999999999999998888843 34444443332211
Q ss_pred ccchHHHHHHHHhcCCCChHHHHHHHHH
Q 002100 660 DIGSLAVVHHMLANDPGKSLLRFRQSLL 687 (967)
Q Consensus 660 ~~~al~~~~~~l~~~p~~~~~~~~~g~~ 687 (967)
.-+..+|.++++++|.+...++.+..+
T Consensus 208 -~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 208 -ELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred -HHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 223677777787777666666654433
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.11 E-value=7.3e-09 Score=104.27 Aligned_cols=142 Identities=23% Similarity=0.173 Sum_probs=101.9
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
+.+..+....+|.+..+...+|...++.|++.+|+..++++....|+++++|..+|.+|.+.|++++|...|.+++++.|
T Consensus 86 l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~ 165 (257)
T COG5010 86 LAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP 165 (257)
T ss_pred HHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc
Confidence 44444555555555555555677777777777788888888778888888888888888888888888888888887777
Q ss_pred chHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHH
Q 002100 744 SFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAH 821 (967)
Q Consensus 744 ~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~ 821 (967)
+.+ .+.+|+|..|.-.|+++.|..++..+... .+..+.
T Consensus 166 ~~p----------------------------------------~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~ 205 (257)
T COG5010 166 NEP----------------------------------------SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVR 205 (257)
T ss_pred CCc----------------------------------------hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHH
Confidence 555 67777777777788888887777777662 344577
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLI 845 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al 845 (967)
.+|+.+...+|++.+|.+...+-+
T Consensus 206 ~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 206 QNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHhhcCChHHHHhhccccc
Confidence 777777778888777776655433
No 126
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.11 E-value=2.3e-09 Score=115.19 Aligned_cols=259 Identities=13% Similarity=0.056 Sum_probs=181.9
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchH
Q 002100 688 LLRLNSQKAAMRSLRLARNYSTS-EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSA 766 (967)
Q Consensus 688 ~~~~g~~~~A~~~l~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~ 766 (967)
++-.|+|..++...+ ....++. ..+....+.+++..+|+++..+......- .|...+.. .++.....+...+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~av~----~la~y~~~~~~~e 83 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPELQAVR----LLAEYLSSPSDKE 83 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCCHHHH----HHHHHHCTSTTHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhHHHHH----HHHHHHhCccchH
Confidence 455789999997666 3334443 45667788889999999887776554422 34333221 2222223334455
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002100 767 YVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIE 846 (967)
Q Consensus 767 ~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 846 (967)
.++..+++.+..... ..........|.++...|++++|++.+.+. ++.........++.++++++.|.+.++.+.+
T Consensus 84 ~~l~~l~~~~~~~~~-~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 84 SALEELKELLADQAG-ESNEIVQLLAATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp CHHHHHHHCCCTS----CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccc-cccHHHHHHHHHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555555433222 122334556688899999999999988765 4556677788899999999999999999887
Q ss_pred HccCCHH-----HHHHHHcc-CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHH
Q 002100 847 KARNNAS-----AYEKRSEY-CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLH 919 (967)
Q Consensus 847 ~~p~~~~-----~~~~~~~~-~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~ 919 (967)
.+.+..- +|.....- .++.+|...|+...+..|..+..+..+|.+.+.+|++++|.+.++++++.+|+ ++++.
T Consensus 160 ~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 160 IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 7765332 33332222 57999999999998888888999999999999999999999999999999999 56999
Q ss_pred HHHHHHHHcCCh-HHHHHHHHHHHhcCCCchhHHHHHHH
Q 002100 920 LRAAFHDSMGDH-LHTQRDCEAALCLDPNHTDTLELYDK 957 (967)
Q Consensus 920 ~~a~~~~~~g~~-~~A~~~~~~al~~~P~~~~~l~l~~r 957 (967)
+++.+...+|+. +.+.+.+.+....+|+|+.+.++-.+
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~ 278 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEK 278 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 999999999998 77888999999999999988775543
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=1.8e-08 Score=100.31 Aligned_cols=136 Identities=18% Similarity=0.113 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHH
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAV 666 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~ 666 (967)
..+.....+....|+.+-|..+++++-...|+..... .+.+..+...++|++| +++
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~------~lkam~lEa~~~~~~A------------------~e~ 108 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVG------KLKAMLLEATGNYKEA------------------IEY 108 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHH------HHHHHHHHHhhchhhH------------------HHH
Confidence 3444555556666777777777777766667766665 5566777777777777 677
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 667 VHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 667 ~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
|...++.+|.+..++-+.--+...+|+.-+|++.+...++..++++++|..++.+|...|+|++|.-++++.+-++|.++
T Consensus 109 y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~ 188 (289)
T KOG3060|consen 109 YESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP 188 (289)
T ss_pred HHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH
Confidence 77777777777777777767777778878888888888888888888888888888888888888888888888888665
No 128
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.09 E-value=3.4e-09 Score=119.50 Aligned_cols=218 Identities=15% Similarity=0.071 Sum_probs=169.2
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 675 PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 675 p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
|........++.++...|....|+..|++. +.|-....+|...|+..+|.....+-++.+|+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~--------- 457 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDP--------- 457 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcc---------
Confidence 444556678899999999999999999874 567777889999999999999888888744422
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCH
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQR 834 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~ 834 (967)
..|..+|++..+..-|++|.+..+... ..+...+|......+++
T Consensus 458 --------------------------------~lyc~LGDv~~d~s~yEkawElsn~~s----arA~r~~~~~~~~~~~f 501 (777)
T KOG1128|consen 458 --------------------------------RLYCLLGDVLHDPSLYEKAWELSNYIS----ARAQRSLALLILSNKDF 501 (777)
T ss_pred --------------------------------hhHHHhhhhccChHHHHHHHHHhhhhh----HHHHHhhccccccchhH
Confidence 466667776666555555555544322 12556666666777888
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002100 835 KAAYDEMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIA 910 (967)
Q Consensus 835 ~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~ 910 (967)
.++.+.++..++++|-....|+.+|- .++++.|..+|..++.++|++..+|.+++..|++.++..+|-..+.+|++
T Consensus 502 s~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 502 SEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred HHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 88888888888888888888888873 37888888888888888888888888888888888888888888888888
Q ss_pred cCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 911 FKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 911 ~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
.+-++ .++.+.-.+....|.+++|++.|.+.+.+.
T Consensus 582 cn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 582 CNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred cCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 88554 377888888888888888888888887654
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.08 E-value=1.5e-08 Score=110.24 Aligned_cols=159 Identities=21% Similarity=0.154 Sum_probs=141.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCC
Q 002100 805 AADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPM 880 (967)
Q Consensus 805 A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~ 880 (967)
+-..+-+-.++....++++.|..++..|++++|...++.++...|+|++.+..++.. ++..+|.+.+++++.++|+
T Consensus 293 ~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~ 372 (484)
T COG4783 293 AADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN 372 (484)
T ss_pred hHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Confidence 333333333345556999999999999999999999999999999999999999853 9999999999999999999
Q ss_pred CchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 002100 881 RTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 881 ~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~ 959 (967)
.+..+.++|.+|++.|++.+|+..++..+..+|+ +..|..+|..|..+|+..+|...+.+.+.+.-+..+..+.+.+++
T Consensus 373 ~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 373 SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 569999999999999999999999999999988888888888888
Q ss_pred hhhh
Q 002100 960 ERVN 963 (967)
Q Consensus 960 ~~~~ 963 (967)
++.+
T Consensus 453 ~~~~ 456 (484)
T COG4783 453 QQVK 456 (484)
T ss_pred Hhcc
Confidence 8764
No 130
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.07 E-value=4.4e-09 Score=118.62 Aligned_cols=221 Identities=14% Similarity=0.093 Sum_probs=183.5
Q ss_pred CCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhh
Q 002100 550 PTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGD 629 (967)
Q Consensus 550 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 629 (967)
|.....-..+|..++..|-..+|+..|++. +.+-....||...|+..+|.....+-++ .|+++..|
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~ly------ 460 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLY------ 460 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhH------
Confidence 444455678899999999999999999885 4677778899999999999999999998 55556555
Q ss_pred hhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 002100 630 NLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPG-KSLLRFRQSLLLLRLNSQKAAMRSLRLARNYS 708 (967)
Q Consensus 630 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~ 708 (967)
-.++.+... ...|+++.+.... +..+...+|....+.++|.++.++++..++++
T Consensus 461 c~LGDv~~d-------------------------~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n 515 (777)
T KOG1128|consen 461 CLLGDVLHD-------------------------PSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN 515 (777)
T ss_pred HHhhhhccC-------------------------hHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC
Confidence 334444443 4455555554322 23355566777778899999999999999999
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHH
Q 002100 709 TSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQA 788 (967)
Q Consensus 709 p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a 788 (967)
|-....|+.+|.+..+.++++.|.+.|.+.+.++|++. .+
T Consensus 516 plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~----------------------------------------ea 555 (777)
T KOG1128|consen 516 PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA----------------------------------------EA 555 (777)
T ss_pred ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch----------------------------------------hh
Confidence 99999999999999999999999999999999999776 89
Q ss_pred HHHhHHHHHhcccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 002100 789 LNNLGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKAR 849 (967)
Q Consensus 789 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 849 (967)
|+|++..|...++..+|-..+++|++-+ |...|.|.-.+....|++++|++.|.+.+....
T Consensus 556 WnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 556 WNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred hhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999944 555889999999999999999999999887654
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.07 E-value=1.8e-09 Score=103.18 Aligned_cols=118 Identities=14% Similarity=0.041 Sum_probs=107.8
Q ss_pred HHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002100 540 MDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPS 618 (967)
Q Consensus 540 ~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 618 (967)
+.|+++++.+|++..+.+.+|..+...|++++|+..+++++..+| ++.++..+|.++..+|++++|+..+++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 467889999999999999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred chHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH
Q 002100 619 YMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR 681 (967)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~ 681 (967)
+...+ +.++.++...+++++| +..++++++.+|++....
T Consensus 84 ~~~~~------~~la~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPY------FHAAECLLALGEPESA------------------LKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHHhccccchHH
Confidence 98888 7889999999999999 889999999999876543
No 132
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.02 E-value=9.6e-09 Score=110.38 Aligned_cols=250 Identities=12% Similarity=0.024 Sum_probs=174.3
Q ss_pred HHHhhcCChHHHHHHHHHHHHhCc---hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcC----ChHH
Q 002100 465 VVMLEREEYKDAQNWFKAAVEAGH---IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYC----SGKE 537 (967)
Q Consensus 465 ~~~~~~g~y~~A~~~f~~al~~~~---~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~----~~~~ 537 (967)
+-+|-.|+|..++..++ ....++ ......+.|.+..+|+....+..+..-- .+....+ .....|. +.+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~av-~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPELQAV-RLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCCHHH-HHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhHHHH-HHHHHHHhCccchHH
Confidence 34667899999998777 223333 4456778899999998776555443321 2222222 1222221 2355
Q ss_pred HHHHHHHhHhhC--CCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 538 KMMDLNTATELD--PTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 538 A~~~~~~al~l~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 615 (967)
++..+++.+... +.+.......|.++...|++++|++.+.+. .+.++......+++.+++++.|.+.++..-+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666665554332 234455666778888899999999887654 46888889999999999999999999999888
Q ss_pred CCCchHHhhhhhhhhhHhhhHHHhh--chhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcC
Q 002100 616 DPSYMMFYGQLHGDNLVETLQPLVQ--QWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNS 693 (967)
Q Consensus 616 ~p~~~~~~~~~~~~~~~~~l~~~~~--~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~ 693 (967)
+.+..... ...+.+....| ++.+| ...|+.+.+..+..+.+...++.+++.+|+
T Consensus 161 ~eD~~l~q------La~awv~l~~g~e~~~~A------------------~y~f~El~~~~~~t~~~lng~A~~~l~~~~ 216 (290)
T PF04733_consen 161 DEDSILTQ------LAEAWVNLATGGEKYQDA------------------FYIFEELSDKFGSTPKLLNGLAVCHLQLGH 216 (290)
T ss_dssp SCCHHHHH------HHHHHHHHHHTTTCCCHH------------------HHHHHHHHCCS--SHHHHHHHHHHHHHCT-
T ss_pred CCcHHHHH------HHHHHHHHHhCchhHHHH------------------HHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 87765544 22222332222 34444 889999888888889999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcccchH
Q 002100 694 QKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHR-EEALAKAEESISIQRSFE 746 (967)
Q Consensus 694 ~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~-~eA~~~~~~al~~~p~~~ 746 (967)
|++|...++++++.+|++++++.+++.+...+|+. +.+.+++.+....+|+++
T Consensus 217 ~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 217 YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 99999999999999999999999999999999998 667778888777888766
No 133
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=2.9e-08 Score=96.02 Aligned_cols=220 Identities=16% Similarity=0.133 Sum_probs=151.7
Q ss_pred CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhh
Q 002100 552 LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDN 630 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 630 (967)
.+..++.+|..|-..|-+.-|.-.|.+++.+.| -++++..+|..+...|+|+.|.+.|...++++|.+.-+. .
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~------l 137 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH------L 137 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHH------h
Confidence 456788999999999999999999999999999 799999999999999999999999999999999988888 7
Q ss_pred hHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHH--HhcCHHHHHHHH-HHHHhc
Q 002100 631 LVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLL--RLNSQKAAMRSL-RLARNY 707 (967)
Q Consensus 631 ~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~--~~g~~~~A~~~l-~~al~~ 707 (967)
++++.....|+|..| ...+.+.-+.+|++|.--. ++|+ ..-++.+|...+ +++...
T Consensus 138 NRgi~~YY~gR~~LA------------------q~d~~~fYQ~D~~DPfR~L---WLYl~E~k~dP~~A~tnL~qR~~~~ 196 (297)
T COG4785 138 NRGIALYYGGRYKLA------------------QDDLLAFYQDDPNDPFRSL---WLYLNEQKLDPKQAKTNLKQRAEKS 196 (297)
T ss_pred ccceeeeecCchHhh------------------HHHHHHHHhcCCCChHHHH---HHHHHHhhCCHHHHHHHHHHHHHhc
Confidence 788888888999888 7777777788888764222 1222 233566666644 344444
Q ss_pred CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHH
Q 002100 708 STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQ 787 (967)
Q Consensus 708 ~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~ 787 (967)
+.+.+. ++. +-+.+|+..+ ...++++.+-..++. . +.+ ...+
T Consensus 197 d~e~WG-~~i---V~~yLgkiS~-e~l~~~~~a~a~~n~--------------------~---~Ae----------~LTE 238 (297)
T COG4785 197 DKEQWG-WNI---VEFYLGKISE-ETLMERLKADATDNT--------------------S---LAE----------HLTE 238 (297)
T ss_pred cHhhhh-HHH---HHHHHhhccH-HHHHHHHHhhccchH--------------------H---HHH----------HHHH
Confidence 433222 111 1122233222 123333332222221 0 001 1226
Q ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhccC------cHHHHHHHHHHHHHhCCHHH
Q 002100 788 ALNNLGSVYVDCEKLDLAADCYMNALNIK------HTRAHQGLARVYHLKNQRKA 836 (967)
Q Consensus 788 a~~~lg~~~~~~g~~~~A~~~~~~Al~~~------~~~a~~~la~~~~~~g~~~~ 836 (967)
+|+.+|..|...|+.++|...|+-|+..+ +..+.+.|+.+...+.+..+
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~~l~~ 293 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQDDLAE 293 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccchhhh
Confidence 89999999999999999999999998833 44477777777666544443
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.95 E-value=2e-07 Score=101.65 Aligned_cols=130 Identities=21% Similarity=0.216 Sum_probs=101.7
Q ss_pred C-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccc
Q 002100 584 V-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIG 662 (967)
Q Consensus 584 p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~ 662 (967)
| ...+++..|..++..|++++|+..++.++...|+|+.++ .+.+.++...++..+|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~------~~~~~i~~~~nk~~~A----------------- 359 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYL------ELAGDILLEANKAKEA----------------- 359 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHH------HHHHHHHHHcCChHHH-----------------
Confidence 5 677788888888888888888888888888888888777 5667777777777777
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 663 SLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEE 737 (967)
Q Consensus 663 al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~ 737 (967)
++.+++++..+|..+.+...+|..|++.|++.+|++.++..+..+|+++..|..++..|..+|+..+|...+-+
T Consensus 360 -~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 360 -IERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred -HHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 77788888888888888888888888888888888888888888888888888888888887776665544433
No 135
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.95 E-value=1.4e-08 Score=95.86 Aligned_cols=104 Identities=17% Similarity=0.183 Sum_probs=91.5
Q ss_pred hcC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Q 002100 672 AND-PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFL 750 (967)
Q Consensus 672 ~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 750 (967)
... ++.-...+.+|..+...|++++|.+.|+.....+|.+...|+++|.++..+|++++|+..|.+++.++|+++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp---- 103 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP---- 103 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----
Confidence 345 566667888899999999999999999999999999999999999999999999999999999999998776
Q ss_pred HHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc
Q 002100 751 KAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI 815 (967)
Q Consensus 751 ~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~ 815 (967)
.++.++|.+++..|+.+.|.+.|+.++..
T Consensus 104 ------------------------------------~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 104 ------------------------------------QAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred ------------------------------------hHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78899999999999999999999998883
No 136
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.92 E-value=1.2e-08 Score=96.15 Aligned_cols=98 Identities=15% Similarity=-0.003 Sum_probs=62.3
Q ss_pred CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 862 CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~ 940 (967)
|++++|...|+....++|.+...|+++|.++..+|++++|+..|.+++.++|+ +..+.+.|.+++..|+.+.|++.|+.
T Consensus 49 G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 49 KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444444455555556666667777777777777777777777777777776 45677777777777777777777777
Q ss_pred HHhcCCCchhHHHHHHHHH
Q 002100 941 ALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 941 al~~~P~~~~~l~l~~r~~ 959 (967)
|+...-.+++-..+..|++
T Consensus 129 Ai~~~~~~~~~~~l~~~A~ 147 (157)
T PRK15363 129 VVRICGEVSEHQILRQRAE 147 (157)
T ss_pred HHHHhccChhHHHHHHHHH
Confidence 7766644444444444433
No 137
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.92 E-value=8.6e-09 Score=114.93 Aligned_cols=103 Identities=20% Similarity=0.237 Sum_probs=88.2
Q ss_pred CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 862 CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~ 940 (967)
+++++|+..|+++++++|+++.++.++|.+|...|++++|+..++++++++|+ ..+++.+|.++..+|++++|+..|++
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 56677777777777777888888889999999999999999999999999998 45888899999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHhhhhh
Q 002100 941 ALCLDPNHTDTLELYDKATERVNE 964 (967)
Q Consensus 941 al~~~P~~~~~l~l~~r~~~~~~~ 964 (967)
+++++|+++.+...+.++..++..
T Consensus 96 al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 96 GASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999998888888777643
No 138
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.88 E-value=1.3e-07 Score=99.12 Aligned_cols=179 Identities=8% Similarity=-0.049 Sum_probs=136.3
Q ss_pred CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhh
Q 002100 552 LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S---PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLH 627 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 627 (967)
.+..++..|..++..|+|++|++.|++++...| + ..+.+.+|.+|++.+++++|+..+++.++.+|+++.+-..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a-- 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV-- 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH--
Confidence 456688899999999999999999999999999 4 3456899999999999999999999999999998876532
Q ss_pred hhhhHhhhHHHhhchhhHhhHHHHHhhhc--ccc---ccchHHHHHHHHhcCCCChHH-----------------HHHHH
Q 002100 628 GDNLVETLQPLVQQWSQADCWMQLYDRWS--SVD---DIGSLAVVHHMLANDPGKSLL-----------------RFRQS 685 (967)
Q Consensus 628 ~~~~~~~l~~~~~~~~~A~~~~~l~~~~~--~~d---~~~al~~~~~~l~~~p~~~~~-----------------~~~~g 685 (967)
.+.++..+...+.- |+.-+.... .-| ...|+..+++.++..|+.... -+..|
T Consensus 109 -~Y~~g~~~~~~~~~-----~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia 182 (243)
T PRK10866 109 -LYMRGLTNMALDDS-----ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVA 182 (243)
T ss_pred -HHHHHHhhhhcchh-----hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 26666654333200 000000000 000 023678899999999986421 12568
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 686 LLLLRLNSQKAAMRSLRLARNYSTSE---HEKLVYEGWILYDTGHREEALAKAEES 738 (967)
Q Consensus 686 ~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~a 738 (967)
..|.+.|.|..|+.-++.+++..|+. .+++..++.+|..+|..++|.......
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 88999999999999999999988874 688999999999999999998876543
No 139
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.87 E-value=1.5e-07 Score=98.67 Aligned_cols=200 Identities=11% Similarity=0.035 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHH---HHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEK---LVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a---~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
+..++..|..+...|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++.+|+++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~-------- 103 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP-------- 103 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC--------
Confidence 3445555666666666666666666666666655433 25556666666666666666666666665333
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCH
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQR 834 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~ 834 (967)
....+++.+|.++...++- .+..-..++. ....+...
T Consensus 104 -----------------------------~~~~a~Y~~g~~~~~~~~~-----~~~~~~~~~~---------~~rD~~~~ 140 (243)
T PRK10866 104 -----------------------------NIDYVLYMRGLTNMALDDS-----ALQGFFGVDR---------SDRDPQHA 140 (243)
T ss_pred -----------------------------chHHHHHHHHHhhhhcchh-----hhhhccCCCc---------cccCHHHH
Confidence 3335555555543332210 0111000000 01111224
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 835 KAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 835 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
.+|+..|++.++..|+...+-...-. ...+.-....--...|..|.+.|+|..|+.-++.+++..|+
T Consensus 141 ~~A~~~~~~li~~yP~S~ya~~A~~r-------------l~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~ 207 (243)
T PRK10866 141 RAAFRDFSKLVRGYPNSQYTTDATKR-------------LVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPD 207 (243)
T ss_pred HHHHHHHHHHHHHCcCChhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCC
Confidence 57889999999999986544322211 11111111222346788999999999999999999999998
Q ss_pred ----hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 915 ----LQLLHLRAAFHDSMGDHLHTQRDCEAA 941 (967)
Q Consensus 915 ----~~~~~~~a~~~~~~g~~~~A~~~~~~a 941 (967)
.++++.+..+|..+|..++|.......
T Consensus 208 t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 208 TQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred CchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 359999999999999999998776543
No 140
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.85 E-value=1.5e-07 Score=91.23 Aligned_cols=197 Identities=17% Similarity=0.119 Sum_probs=144.6
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhh
Q 002100 677 KSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALA 756 (967)
Q Consensus 677 ~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la 756 (967)
.+.+++.+|.+|-..|-+.-|.-.|.+++.+.|..+++++++|..+...|+++.|.+.|...++++|.+.
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~---------- 133 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---------- 133 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch----------
Confidence 4567889999999999999999999999999999999999999999999999999999999999999777
Q ss_pred hcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHH-HHHHHhCCHH
Q 002100 757 DSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLA-RVYHLKNQRK 835 (967)
Q Consensus 757 ~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la-~~~~~~g~~~ 835 (967)
.+..|.|..+.--|+|.-|.+.+.+-...++.+.+..|= .+-...-+..
T Consensus 134 ------------------------------Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~ 183 (297)
T COG4785 134 ------------------------------YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPK 183 (297)
T ss_pred ------------------------------HHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHH
Confidence 688899999999999999999998888755444222211 1123344667
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHcc-CChHHHHHHHHHhhccCCCC-------chHHHHHHHHHHhCCCHHHHHHHHHH
Q 002100 836 AAYDEMTKLIEKARNNASAYEKRSEY-CDRDMAKSDLSMATQLDPMR-------TYPYRYRAAVLMDDHKEAEAIAELSR 907 (967)
Q Consensus 836 ~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~~A~~~l~~al~l~p~~-------~~~~~~la~~~~~~g~~~eAi~~~~k 907 (967)
+|...+.+--+...+.-+.|..-+.| |+..+ ...++++.+...++ .+++.++|..+...|+.++|...|+-
T Consensus 184 ~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKL 262 (297)
T COG4785 184 QAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKL 262 (297)
T ss_pred HHHHHHHHHHHhccHhhhhHHHHHHHHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 77766654444444445555555433 33221 22233333332222 46788888888889999999998888
Q ss_pred HHhcCCC
Q 002100 908 AIAFKPD 914 (967)
Q Consensus 908 al~~~p~ 914 (967)
++..+--
T Consensus 263 aiannVy 269 (297)
T COG4785 263 AVANNVY 269 (297)
T ss_pred HHHHhHH
Confidence 8766543
No 141
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.84 E-value=4.9e-08 Score=90.68 Aligned_cols=112 Identities=11% Similarity=0.055 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCH
Q 002100 819 RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKE 898 (967)
Q Consensus 819 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~ 898 (967)
++++.+|..+..+|++++|++.|.++++.+|++ |....+++.+|.++...|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~~~ 55 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS---------------------------TYAPNAHYWLGEAYYAQGKY 55 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------------------------cccHHHHHHHHHHHHhhccH
Confidence 356777788888888888888877777766641 23356788899999999999
Q ss_pred HHHHHHHHHHHhcCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 002100 899 AEAIAELSRAIAFKPD----LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDK 957 (967)
Q Consensus 899 ~eAi~~~~kal~~~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r 957 (967)
++|+..|++++...|+ +.++..+|.++..+|++++|+..++++++..|+++.+.....|
T Consensus 56 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 118 (119)
T TIGR02795 56 ADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKR 118 (119)
T ss_pred HHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence 9999999999998887 3488999999999999999999999999999999988776554
No 142
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.84 E-value=9.9e-08 Score=97.76 Aligned_cols=187 Identities=20% Similarity=0.173 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE---HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
+..++..|..++..|+|.+|+..|++++...|.. ..+.+.+|.+++..|++++|+..+++.+...|+.+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-------- 76 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-------- 76 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc--------
Confidence 3456666666667777777777777666665543 45666666677777777777777766666666433
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCH
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQR 834 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~ 834 (967)
....+++.+|.++..+..- .+ .....++..
T Consensus 77 -----------------------------~~~~A~Y~~g~~~~~~~~~---------~~------------~~~~D~~~~ 106 (203)
T PF13525_consen 77 -----------------------------KADYALYMLGLSYYKQIPG---------IL------------RSDRDQTST 106 (203)
T ss_dssp -----------------------------THHHHHHHHHHHHHHHHHH---------HH-------------TT---HHH
T ss_pred -----------------------------chhhHHHHHHHHHHHhCcc---------ch------------hcccChHHH
Confidence 3335666666554433100 00 112334456
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 835 KAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 835 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
.+|+..|+..++..|+...+-..... +..++.. ...--+..|..|.+.|++..|+..++.+++..|+
T Consensus 107 ~~A~~~~~~li~~yP~S~y~~~A~~~-------l~~l~~~------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~ 173 (203)
T PF13525_consen 107 RKAIEEFEELIKRYPNSEYAEEAKKR-------LAELRNR------LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPD 173 (203)
T ss_dssp HHHHHHHHHHHHH-TTSTTHHHHHHH-------HHHHHHH------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHCcCchHHHHHHHH-------HHHHHHH------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 78999999999999986544222211 1111111 1223345789999999999999999999999999
Q ss_pred h----HHHHHHHHHHHHcCChHHHH
Q 002100 915 L----QLLHLRAAFHDSMGDHLHTQ 935 (967)
Q Consensus 915 ~----~~~~~~a~~~~~~g~~~~A~ 935 (967)
. +++..++..|.++|..+.|.
T Consensus 174 t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 174 TPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp SHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CchHHHHHHHHHHHHHHhCChHHHH
Confidence 3 48899999999999998554
No 143
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.80 E-value=1.9e-06 Score=89.80 Aligned_cols=312 Identities=14% Similarity=0.071 Sum_probs=170.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHh-Cc----hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCC
Q 002100 460 FHQLGVVMLEREEYKDAQNWFKAAVEA-GH----IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCS 534 (967)
Q Consensus 460 ~~~lG~~~~~~g~y~~A~~~f~~al~~-~~----~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~ 534 (967)
....|.-++...++++|+..+.+.+.. +. ...+..+..+...+|.++++...--..|+.+........
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~------- 81 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDF------- 81 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 345677788899999999999998876 22 122223445555566655555444333332211111000
Q ss_pred hHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C-----hhHHHHHHHHHHHhcCHHHHHHH
Q 002100 535 GKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S-----PDCLELRAWISIALEDYDGALRD 608 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~-----~~~~~~la~~~~~~g~~~~A~~~ 608 (967)
...++.+++..+....++.+++.+-+..+.+.. . ......++..+.-++.++++++.
T Consensus 82 -----------------~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Les 144 (518)
T KOG1941|consen 82 -----------------LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALES 144 (518)
T ss_pred -----------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHH
Confidence 113344445555444555555544444444322 1 12344455555555555555555
Q ss_pred HHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCC----------Ch
Q 002100 609 VRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPG----------KS 678 (967)
Q Consensus 609 ~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~----------~~ 678 (967)
|++++....++.+.........-++.++..++++++| +.+..++.++... ..
T Consensus 145 fe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Ka------------------l~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 145 FEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKA------------------LFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred HHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHH------------------hhhhHhHHHHHHhcCcCchhHHHHH
Confidence 5555554332222221111113344455555555555 2222332222110 12
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYS------TSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKA 752 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~~------p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 752 (967)
...+.++..+..+|..-.|.++++++.++. +-....+.-+|.||...|+.+.|...|+.|.........
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gd----- 281 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGD----- 281 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhh-----
Confidence 345678888899999999999999987753 233455677899999999999999999999865442210
Q ss_pred HHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccH-----HHHHHHHHHHhcc----CcH----H
Q 002100 753 YALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKL-----DLAADCYMNALNI----KHT----R 819 (967)
Q Consensus 753 ~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~-----~~A~~~~~~Al~~----~~~----~ 819 (967)
+ .....++...+.+.....-. =.|++.-++++++ +.. .
T Consensus 282 --------------r---------------mgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK 332 (518)
T KOG1941|consen 282 --------------R---------------MGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLK 332 (518)
T ss_pred --------------h---------------HHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHH
Confidence 0 00112233333333222222 3467766666662 222 2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002100 820 AHQGLARVYHLKNQRKAAYDEMTKLIEK 847 (967)
Q Consensus 820 a~~~la~~~~~~g~~~~A~~~~~~al~~ 847 (967)
.+..++.+|..+|.-++-...+.++-+.
T Consensus 333 ~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 333 LHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 7888999999998887777666665443
No 144
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.79 E-value=3.8e-08 Score=109.77 Aligned_cols=98 Identities=17% Similarity=0.156 Sum_probs=91.3
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALED 601 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~ 601 (967)
|..+...+.| ++|+..|+++++++|++..+|+.+|.++...|++++|+..+++++.++| ++.+++.+|.++..+|+
T Consensus 9 a~~a~~~~~~---~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDF---ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3444445545 9999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCchHHh
Q 002100 602 YDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 602 ~~~A~~~~~~al~l~p~~~~~~ 623 (967)
|++|+..|++++.++|++..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~ 107 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFT 107 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999887
No 145
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=2.6e-08 Score=95.12 Aligned_cols=117 Identities=21% Similarity=0.269 Sum_probs=96.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHH
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEA 901 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA 901 (967)
-.-|.-++..|+|++|...|..+|+..|.... ......|.++|.+++++++++.|
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-------------------------e~rsIly~Nraaa~iKl~k~e~a 153 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTST-------------------------EERSILYSNRAAALIKLRKWESA 153 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccH-------------------------HHHHHHHhhhHHHHHHhhhHHHH
Confidence 33455667777777777777777777764211 01235678899999999999999
Q ss_pred HHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 002100 902 IAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVN 963 (967)
Q Consensus 902 i~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~ 963 (967)
|..+.++|+++|.+. ++..||.+|.++.++++|+.+|+++++.+|...++.+...|+...+.
T Consensus 154 I~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 154 IEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred HHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 999999999999965 88999999999999999999999999999999999988888776554
No 146
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.79 E-value=2.5e-07 Score=94.78 Aligned_cols=171 Identities=12% Similarity=0.081 Sum_probs=124.1
Q ss_pred CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC----ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhh
Q 002100 552 LSYPYKYRAILLVEENKLAAAITEINRIIGFKV----SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLH 627 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 627 (967)
.+..++..|..++..|+|.+|+..|++++...| .+.+.+.+|.+++..|++++|+..+++.++..|+++.+-..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A-- 81 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA-- 81 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH--
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH--
Confidence 356788999999999999999999999999988 36799999999999999999999999999999998865422
Q ss_pred hhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH-----------------HHHHHHHHH
Q 002100 628 GDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR-----------------FRQSLLLLR 690 (967)
Q Consensus 628 ~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~-----------------~~~g~~~~~ 690 (967)
.+.++..+.....-. + .+ .........|+..++..+...|+...+- +..|..|.+
T Consensus 82 -~Y~~g~~~~~~~~~~-----~-~~-~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 82 -LYMLGLSYYKQIPGI-----L-RS-DRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK 153 (203)
T ss_dssp -HHHHHHHHHHHHHHH-----H--T-T---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHhCccc-----h-hc-ccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 266666554432111 0 00 0000011245888999999999875321 356888999
Q ss_pred hcCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHcCChHHHH
Q 002100 691 LNSQKAAMRSLRLARNYSTSE---HEKLVYEGWILYDTGHREEAL 732 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~p~~---~~a~~~lg~~~~~~g~~~eA~ 732 (967)
.|.|..|+.-++.+++..|+. .+++..++.++..+|..+.|.
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999999999999885 467889999999999988554
No 147
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.74 E-value=9.6e-09 Score=105.52 Aligned_cols=235 Identities=10% Similarity=0.013 Sum_probs=171.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCC
Q 002100 681 RFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSL 760 (967)
Q Consensus 681 ~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~ 760 (967)
.-.+|.-|+++|.|++|+.+|.+++..+|.++-.+.+.+.+|+++.++..|...++.|+.++..+.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~-------------- 165 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYV-------------- 165 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHH--------------
Confidence 456789999999999999999999999999999999999999999999999999999998887554
Q ss_pred CCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhC------
Q 002100 761 NPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKN------ 832 (967)
Q Consensus 761 ~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g------ 832 (967)
.+|...|.+...+|+..+|.+.++.++++.|.. ..-.++.+.....
T Consensus 166 --------------------------KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~K 219 (536)
T KOG4648|consen 166 --------------------------KAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATK 219 (536)
T ss_pred --------------------------HHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhh
Confidence 788889999999999999999999999866543 2222222211000
Q ss_pred ---CHHHHHHHHHHHH-HHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002100 833 ---QRKAAYDEMTKLI-EKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRA 908 (967)
Q Consensus 833 ---~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~ka 908 (967)
-+-.|..-..++| ...+. ..+. ..+.++.++.++.+-+..+.++.....+ +..|.+..++++|+....++
T Consensus 220 sT~G~~~A~Q~~~Q~l~~K~~G--~~Fs---k~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~ 293 (536)
T KOG4648|consen 220 STPGFTPARQGMIQILPIKKPG--YKFS---KKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKK 293 (536)
T ss_pred cCCCCCccccchhhhccccCcc--hhhh---hhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHh
Confidence 0111222222222 11111 1111 1256667777776666655555544444 77888889999999999999
Q ss_pred HhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhh
Q 002100 909 IAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATER 961 (967)
Q Consensus 909 l~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~ 961 (967)
+-.+|.+ .....++.+.--.|...+|..+++.++.+.|.+....+-..|....
T Consensus 294 ~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr~~~~ 347 (536)
T KOG4648|consen 294 TNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETETRKDTK 347 (536)
T ss_pred cCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhhhhccc
Confidence 9888874 3555667777778899999999999999999998887777776544
No 148
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.74 E-value=3.1e-07 Score=99.45 Aligned_cols=173 Identities=17% Similarity=0.162 Sum_probs=105.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHH
Q 002100 718 EGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYV 797 (967)
Q Consensus 718 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~ 797 (967)
.|..|...|++++|...|.++........ +....+..|...+.+|.
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~----------------------------------~~~~Aa~~~~~Aa~~~k 86 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLG----------------------------------DKFEAAKAYEEAANCYK 86 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-----------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcC----------------------------------CHHHHHHHHHHHHHHHH
Confidence 47778888999999999988875543111 01122356677777776
Q ss_pred hcccHHHHHHHHHHHhc----cCcH----HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHH
Q 002100 798 DCEKLDLAADCYMNALN----IKHT----RAHQGLARVYHLK-NQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAK 868 (967)
Q Consensus 798 ~~g~~~~A~~~~~~Al~----~~~~----~a~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~ 868 (967)
.. ++++|+.+|++|++ .+.. ..+..+|.+|... |++++|++.|+++++.......... +
T Consensus 87 ~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~----------a- 154 (282)
T PF14938_consen 87 KG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS----------A- 154 (282)
T ss_dssp HT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH----------H-
T ss_pred hh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh----------H-
Confidence 66 99999999999987 3332 2778899999988 9999999999999887553211100 0
Q ss_pred HHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-----h---HHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 869 SDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-----L---QLLHLRAAFHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 869 ~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-----~---~~~~~~a~~~~~~g~~~~A~~~~~~ 940 (967)
...+...|.++.+.|+|++|++.|+++....-+ . ..+...+.+++.+||...|...+++
T Consensus 155 -------------~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 155 -------------AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp -------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 123344556666666666666666666553322 1 1333445566666666666666666
Q ss_pred HHhcCCCch
Q 002100 941 ALCLDPNHT 949 (967)
Q Consensus 941 al~~~P~~~ 949 (967)
....+|...
T Consensus 222 ~~~~~~~F~ 230 (282)
T PF14938_consen 222 YCSQDPSFA 230 (282)
T ss_dssp HGTTSTTST
T ss_pred HHhhCCCCC
Confidence 666666543
No 149
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=6e-08 Score=103.74 Aligned_cols=130 Identities=18% Similarity=0.173 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHH
Q 002100 821 HQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAE 900 (967)
Q Consensus 821 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e 900 (967)
....|..|++.|+|..|...|++++..-..... . +.++.... .+ .....+.|+|.++.++++|.+
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~-------~-~~ee~~~~--~~-----~k~~~~lNlA~c~lKl~~~~~ 275 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRS-------F-DEEEQKKA--EA-----LKLACHLNLAACYLKLKEYKE 275 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhcccc-------C-CHHHHHHH--HH-----HHHHHhhHHHHHHHhhhhHHH
Confidence 344677888888888888888888875432100 0 00111100 11 123568899999999999999
Q ss_pred HHHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhhhc
Q 002100 901 AIAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVNEQ 965 (967)
Q Consensus 901 Ai~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~~~ 965 (967)
|+..++++|+.+|++. +++.+|.++..+|+++.|+.+|++|++++|+|.++..-+.++.++++.+
T Consensus 276 Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 276 AIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999965 9999999999999999999999999999999999988888888876543
No 150
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.70 E-value=4.2e-08 Score=81.35 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=63.0
Q ss_pred CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC
Q 002100 552 LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE-DYDGALRDVRALLTLDP 617 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~l~p 617 (967)
++..|..+|.+++..|++++|+..|+++++++| ++.+++.+|.+|..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 567899999999999999999999999999999 8999999999999999 79999999999999998
No 151
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.68 E-value=6.8e-08 Score=80.07 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcC-ChHHHHHHHHHHHhccc
Q 002100 677 KSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTG-HREEALAKAEESISIQR 743 (967)
Q Consensus 677 ~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g-~~~eA~~~~~~al~~~p 743 (967)
++..++.+|.++...|++++|+..|+++++.+|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56789999999999999999999999999999999999999999999999 79999999999999987
No 152
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.68 E-value=4.5e-07 Score=105.21 Aligned_cols=146 Identities=16% Similarity=0.135 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHhCchhH--HHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHh
Q 002100 456 KQLAFHQLGVVMLEREE---YKDAQNWFKAAVEAGHIYS--LVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERS 530 (967)
Q Consensus 456 ~a~a~~~lG~~~~~~g~---y~~A~~~f~~al~~~~~~a--~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~ 530 (967)
.+..++..|..++...+ .++|+.+|++|++++|.++ +.+++.++.....+ .. ....
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~--------------~~-----~~~~ 398 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQ--------------QP-----LDEK 398 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhc--------------CC-----ccHH
Confidence 45566777777776554 8899999999999999654 44444444221110 00 0001
Q ss_pred hcCChHHHHHHHHHhHhh--CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHH
Q 002100 531 LYCSGKEKMMDLNTATEL--DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRD 608 (967)
Q Consensus 531 ~y~~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~ 608 (967)
+...+.....+++.+ +|..+.+|..+|..+...|++++|...+++++.++|+..+|..+|.++...|++++|++.
T Consensus 399 ---~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~ 475 (517)
T PRK10153 399 ---QLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADA 475 (517)
T ss_pred ---HHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 125566666776664 777888899999999999999999999999999999989999999999999999999999
Q ss_pred HHHHHHhCCCchHHh
Q 002100 609 VRALLTLDPSYMMFY 623 (967)
Q Consensus 609 ~~~al~l~p~~~~~~ 623 (967)
|++++.++|.++..+
T Consensus 476 ~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 476 YSTAFNLRPGENTLY 490 (517)
T ss_pred HHHHHhcCCCCchHH
Confidence 999999999988655
No 153
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=4.6e-07 Score=97.10 Aligned_cols=144 Identities=14% Similarity=0.121 Sum_probs=80.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHH
Q 002100 459 AFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEK 538 (967)
Q Consensus 459 a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A 538 (967)
....-|..|++.|+|..|..-|++|+..=.. ...-+.++......-.+..+.|++.++.++..| .+|
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~----------~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~---~~A 276 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEY----------RRSFDEEEQKKAEALKLACHLNLAACYLKLKEY---KEA 276 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhc----------cccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhH---HHH
Confidence 3456799999999999999999999886110 000000111111122223444555555555555 566
Q ss_pred HHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHH-HHHHHHHHHh
Q 002100 539 MMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGA-LRDVRALLTL 615 (967)
Q Consensus 539 ~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A-~~~~~~al~l 615 (967)
+...+++|+++|+|..++|.+|.++..+++|+.|+..|+++++++| |..+...+..+..+..++.+. .+.|...+..
T Consensus 277 i~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 277 IESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6666666666666666666666666666666666666666666666 555555555555444444333 4445544443
No 154
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.66 E-value=2.8e-08 Score=102.22 Aligned_cols=200 Identities=11% Similarity=0.055 Sum_probs=142.1
Q ss_pred CcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHH
Q 002100 520 TPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIA 598 (967)
Q Consensus 520 ~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~ 598 (967)
...|+-|++++.| ++|+.+|.+++..+|.|+..+.++|.+|+++++|..|...++.|+.++. ...+|..++.....
T Consensus 101 KE~GN~yFKQgKy---~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 101 KERGNTYFKQGKY---EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES 177 (536)
T ss_pred HHhhhhhhhccch---hHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3458899999988 9999999999999999999999999999999999999999999999999 78899999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh
Q 002100 599 LEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS 678 (967)
Q Consensus 599 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~ 678 (967)
+|...+|.++++.+|.+.|++....- .+..+....+++ +.. -+....+.|...-.+++..
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK----------~~a~i~Sl~E~~----I~~-KsT~G~~~A~Q~~~Q~l~~----- 237 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKK----------SLARINSLRERK----IAT-KSTPGFTPARQGMIQILPI----- 237 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHH----------HHHHhcchHhhh----HHh-hcCCCCCccccchhhhccc-----
Confidence 99999999999999999999665541 111111111211 000 0000011122222222211
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
-..|..+...+.++.++.++.+-+.....+.....+ +..+.+.-++++|+....+++..+|...
T Consensus 238 ---K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~ 301 (536)
T KOG4648|consen 238 ---KKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPM 301 (536)
T ss_pred ---cCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcC
Confidence 123556667778888888777665554443333333 5566677788888888888887777443
No 155
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.66 E-value=1.2e-05 Score=83.98 Aligned_cols=246 Identities=13% Similarity=0.111 Sum_probs=165.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCCC----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhh
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKVS----PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNL 631 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 631 (967)
....|.-++...++++|+....+.+..-.+ ...+-.+..+...+|.|++++..--..+...-+..+......+..+
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ln 88 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLN 88 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677778888888888887765442 2344455667777888888776544333332211111111122256
Q ss_pred HhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCC-----hHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002100 632 VETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGK-----SLLRFRQSLLLLRLNSQKAAMRSLRLARN 706 (967)
Q Consensus 632 ~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~-----~~~~~~~g~~~~~~g~~~~A~~~l~~al~ 706 (967)
++..+..+.++.++ +.+-..-+.+.... ......+|..+..++.++++++.|+.|++
T Consensus 89 lar~~e~l~~f~kt------------------~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~ 150 (518)
T KOG1941|consen 89 LARSNEKLCEFHKT------------------ISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALR 150 (518)
T ss_pred HHHHHHHHHHhhhH------------------HHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 66777776667666 44444444432211 24556688999999999999999999998
Q ss_pred cCCchh------HHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCC
Q 002100 707 YSTSEH------EKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPS 780 (967)
Q Consensus 707 ~~p~~~------~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~ 780 (967)
...++. .++..+|..+-...++++|+-+..+|.++-.+.. +.| -+.
T Consensus 151 ~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~--------l~d------~~~-------------- 202 (518)
T KOG1941|consen 151 YAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG--------LKD------WSL-------------- 202 (518)
T ss_pred HhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC--------cCc------hhH--------------
Confidence 755443 4677899999999999999988888876654221 000 000
Q ss_pred CCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc----Cc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 002100 781 DGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI----KH----TRAHQGLARVYHLKNQRKAAYDEMTKLIEKAR 849 (967)
Q Consensus 781 ~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~----~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 849 (967)
.....+++.++..+..+|..-.|.++.++|.++ ++ ...+..+|.+|...|+.+.|...|+.+.....
T Consensus 203 --kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~ 277 (518)
T KOG1941|consen 203 --KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA 277 (518)
T ss_pred --HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence 012257788999999999999999999998872 22 23677799999999999999999998876543
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.65 E-value=4.2e-07 Score=90.63 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE---HEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
...++.+|..+...|++++|+..|+++++..|+. ..++..+|.++...|++++|+..+++++...|
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 3445555555555555555555555555444332 23445555555555555555555555555444
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.64 E-value=1.1e-06 Score=95.09 Aligned_cols=223 Identities=12% Similarity=0.065 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----c-hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYST-----S-EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKA 752 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p-----~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 752 (967)
..+...|..|...+++++|...|.++....- . ....+...+.++.+. ++++|+..|++++.+.....
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G------ 108 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG------ 108 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC------
Confidence 3455668888899999999999998865432 1 134555666666555 99999999999996643211
Q ss_pred HHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc-ccHHHHHHHHHHHhcc----CcH----HHHHH
Q 002100 753 YALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC-EKLDLAADCYMNALNI----KHT----RAHQG 823 (967)
Q Consensus 753 ~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~-g~~~~A~~~~~~Al~~----~~~----~a~~~ 823 (967)
.....+..+.++|.+|... +++++|+++|++|++. +.. ..+..
T Consensus 109 ----------------------------~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~ 160 (282)
T PF14938_consen 109 ----------------------------RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLK 160 (282)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ----------------------------cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence 0112346788999999999 9999999999999982 221 27888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHH
Q 002100 824 LARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIA 903 (967)
Q Consensus 824 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~ 903 (967)
+|.++...|+|++|++.|+++....-++... .......+...+.+++..|++..|..
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~-----------------------~~~~~~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLL-----------------------KYSAKEYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT-----------------------GHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhccccc-----------------------chhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999888754321000 00011234456678888899999999
Q ss_pred HHHHHHhcCCCh----H--HHHHHHHHHHH--cCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 904 ELSRAIAFKPDL----Q--LLHLRAAFHDS--MGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 904 ~~~kal~~~p~~----~--~~~~~a~~~~~--~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
.+++....+|.. + .+..+-.++.. ...+.+|+..|...-.+ |++...++.++++.+
T Consensus 218 ~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l---d~w~~~~l~~~k~~~ 281 (282)
T PF14938_consen 218 ALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL---DNWKTKMLLKIKKKI 281 (282)
T ss_dssp HHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS------HHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc---HHHHHHHHHHHHhhc
Confidence 999999998862 2 44444444443 34577888888776555 557777777777654
No 158
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.62 E-value=1.2e-07 Score=98.43 Aligned_cols=144 Identities=16% Similarity=0.167 Sum_probs=115.3
Q ss_pred EEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccc--eEEeccCCCCHHHHHHHHHhHcCCCCCCCCHHHHHHHHHH
Q 002100 258 MSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRRE--KVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLVLELLSF 335 (967)
Q Consensus 258 v~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~--~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~ll~~ 335 (967)
|.+-+++ +.|||+.++ .|..||+.||.|+|.|+..+ ...++-++.+..+.+.+++|+|+++. ++.++-..+++-+
T Consensus 295 iql~~~~-RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~t-di~~~~A~dvll~ 371 (516)
T KOG0511|consen 295 IQLPEED-RYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQT-DIIFDVASDVLLF 371 (516)
T ss_pred ccccccc-cccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccc-cchHHHHhhHHHH
Confidence 4444444 599999999 57799999999999996422 23333344888999999999999999 8999999999999
Q ss_pred hchhChH--H-HHHHHHHHHHhhCC--ChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhhcCCchhHhhhhcc
Q 002100 336 ANRFCCE--E-LKSACDSYLASMVS--DIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCS 404 (967)
Q Consensus 336 A~~~~~~--~-l~~~c~~~l~~~~~--~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~l~~~~~~~ll~s 404 (967)
|+++.+. + ||.+....|.+... +.-+|..+++++.......|..++..|+.+++...++.|++...+..
T Consensus 372 ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~ 445 (516)
T KOG0511|consen 372 ADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRT 445 (516)
T ss_pred hhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHh
Confidence 9999776 2 56665555544322 15679999999999999999999999999999999999888876654
No 159
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.62 E-value=1.3e-06 Score=84.42 Aligned_cols=120 Identities=17% Similarity=0.096 Sum_probs=89.7
Q ss_pred HHhcCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCch
Q 002100 689 LRLNSQKAAMRSLRLARNYSTSE---HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESS 765 (967)
Q Consensus 689 ~~~g~~~~A~~~l~~al~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~ 765 (967)
...+++..+...++..+...|+. ..+.+.+|.+++..|++++|...|++++...|+..
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~------------------- 82 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE------------------- 82 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH-------------------
Confidence 35677888888888888888877 45677788888888888888888888887665433
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC-cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002100 766 AYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK-HTRAHQGLARVYHLKNQRKAAYDEMTKL 844 (967)
Q Consensus 766 ~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~-~~~a~~~la~~~~~~g~~~~A~~~~~~a 844 (967)
....+...++.++...|++++|+..++...... ...++..+|.++..+|++++|+..|+++
T Consensus 83 ------------------l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 83 ------------------LKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred ------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 122467778888888888888888886643322 2236777888888888888888888876
Q ss_pred H
Q 002100 845 I 845 (967)
Q Consensus 845 l 845 (967)
+
T Consensus 145 l 145 (145)
T PF09976_consen 145 L 145 (145)
T ss_pred C
Confidence 4
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.61 E-value=1.6e-07 Score=76.70 Aligned_cols=64 Identities=23% Similarity=0.226 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCch
Q 002100 557 KYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYM 620 (967)
Q Consensus 557 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 620 (967)
+.+|..++..|++++|+..|+++++.+| ++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4679999999999999999999999999 899999999999999999999999999999999875
No 161
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.60 E-value=1.8e-07 Score=76.48 Aligned_cols=64 Identities=27% Similarity=0.225 Sum_probs=58.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch
Q 002100 886 RYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHT 949 (967)
Q Consensus 886 ~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~ 949 (967)
+.+|..++..|++++|+..|+++++..|+ .++++.+|.++..+|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35789999999999999999999999999 46999999999999999999999999999999986
No 162
>PRK11906 transcriptional regulator; Provisional
Probab=98.60 E-value=2.4e-06 Score=94.00 Aligned_cols=158 Identities=10% Similarity=0.077 Sum_probs=103.5
Q ss_pred HHHHHHHHHhcC---cHHHHHHHHHHHh---ccCC-ChhHHHHHHHHHHHh---------cCHHHHHHHHHHHHHhCCCc
Q 002100 556 YKYRAILLVEEN---KLAAAITEINRII---GFKV-SPDCLELRAWISIAL---------EDYDGALRDVRALLTLDPSY 619 (967)
Q Consensus 556 ~~~la~~~~~~g---~~~~A~~~~~~al---~~~p-~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~l~p~~ 619 (967)
++.+|...+..+ ..+.|+..|.+++ .++| ...+|..+|.++... .+-.+|.+..+++++++|++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 377777776655 3567888999999 8888 788999999988765 12345566666666666666
Q ss_pred hHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHH
Q 002100 620 MMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMR 699 (967)
Q Consensus 620 ~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~ 699 (967)
+.+. ..+|.+....++++.| +..+++++.++|+.+.+++..|.+..-.|+.++|++
T Consensus 338 a~a~------~~~g~~~~~~~~~~~a------------------~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 338 GKIL------AIMGLITGLSGQAKVS------------------HILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred HHHH------HHHHHHHHhhcchhhH------------------HHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666 4556655555555555 666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCchhHHHHHHHHH-HHHcCChHHHHHHHHH
Q 002100 700 SLRLARNYSTSEHEKLVYEGWI-LYDTGHREEALAKAEE 737 (967)
Q Consensus 700 ~l~~al~~~p~~~~a~~~lg~~-~~~~g~~~eA~~~~~~ 737 (967)
.++++++++|....+-...-++ .+.....++|++.|-+
T Consensus 394 ~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 394 CIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 6666666666655554444444 4444555666665544
No 163
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.59 E-value=8.8e-07 Score=82.17 Aligned_cols=107 Identities=15% Similarity=0.139 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHh
Q 002100 713 EKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNL 792 (967)
Q Consensus 713 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~l 792 (967)
+.++.+|..+...|++++|+..|++++..+|++. ....+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~l 45 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST-------------------------------------YAPNAHYWL 45 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc-------------------------------------ccHHHHHHH
Confidence 4566677777777777777777777776666332 122466677
Q ss_pred HHHHHhcccHHHHHHHHHHHhcc--Cc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHH
Q 002100 793 GSVYVDCEKLDLAADCYMNALNI--KH---TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYE 856 (967)
Q Consensus 793 g~~~~~~g~~~~A~~~~~~Al~~--~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 856 (967)
|.++...|++++|+..|++++.. ++ ..++..+|.++..+|++++|+..++++++..|++..+..
T Consensus 46 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 46 GEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 77777777777777777777762 22 236777777778888888888888888888777655443
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.59 E-value=7.9e-07 Score=88.37 Aligned_cols=114 Identities=17% Similarity=0.129 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHH
Q 002100 694 QKAAMRSLRLARNYSTSE--HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQL 771 (967)
Q Consensus 694 ~~~A~~~l~~al~~~p~~--~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~ 771 (967)
+..+...+...++.++.+ ...++.+|.++...|++++|+..|++++.+.|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------------------------- 69 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY------------------------- 69 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-------------------------
Confidence 334444444443444433 44556677777777777777777777776654221
Q ss_pred HHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH--HHHHHHHHHHH-------HhCCHHHHHHHHH
Q 002100 772 LEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT--RAHQGLARVYH-------LKNQRKAAYDEMT 842 (967)
Q Consensus 772 le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~--~a~~~la~~~~-------~~g~~~~A~~~~~ 842 (967)
....++.++|.++...|++++|+.+|++++.+.+. ..+..+|.++. .+|+++.|+..++
T Consensus 70 ------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 70 ------------DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred ------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 11246677777777777777777777777764332 35555555555 5556665555444
Q ss_pred HH
Q 002100 843 KL 844 (967)
Q Consensus 843 ~a 844 (967)
++
T Consensus 138 ~a 139 (168)
T CHL00033 138 QA 139 (168)
T ss_pred HH
Confidence 33
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.59 E-value=1.6e-06 Score=100.69 Aligned_cols=145 Identities=11% Similarity=0.040 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchH
Q 002100 588 CLELRAWISIALED---YDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSL 664 (967)
Q Consensus 588 ~~~~la~~~~~~g~---~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al 664 (967)
.++++|.-|...++ ...|+..|+++++++|++..++. .++.++.....|...+ ..+...+.
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A------~la~~~~~~~~~~~~~----------~~~l~~a~ 404 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQA------EKALADIVRHSQQPLD----------EKQLAALS 404 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHH------HHHHHHHHHHhcCCcc----------HHHHHHHH
Confidence 34556666655443 66777777888888887777762 2233332222221100 00001123
Q ss_pred HHHHHHHh--cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 002100 665 AVVHHMLA--NDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQ 742 (967)
Q Consensus 665 ~~~~~~l~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 742 (967)
....+++. .+|..+.++..+|..+...|++++|...+++|+.++|+ ..+|..+|.++...|++++|+..|++|+.++
T Consensus 405 ~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 405 TELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44445555 37777888999999999999999999999999999995 7899999999999999999999999999999
Q ss_pred cchHHHH
Q 002100 743 RSFEAFF 749 (967)
Q Consensus 743 p~~~~~~ 749 (967)
|.++.++
T Consensus 484 P~~pt~~ 490 (517)
T PRK10153 484 PGENTLY 490 (517)
T ss_pred CCCchHH
Confidence 9877443
No 166
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=1.6e-05 Score=80.24 Aligned_cols=258 Identities=15% Similarity=0.070 Sum_probs=178.2
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH-HhhhcCCCCCchH
Q 002100 688 LLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAY-ALADSSLNPESSA 766 (967)
Q Consensus 688 ~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~-~la~~~~~~~~~~ 766 (967)
++..|.|.+++..-++.-... ...+...++.+.|..+|++..-+.....+- ..| +.+. .+++..-.+...+
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~-~~~------lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK-ATP------LQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc-CCh------HHHHHHHHHHhhCcchhH
Confidence 455788888887666654443 677788888889998888776554443332 111 1111 2233222333333
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002100 767 YVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIE 846 (967)
Q Consensus 767 ~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 846 (967)
..+.-+.+......... ..-....-|.+|...+++++|++..... ..-.+...-..++.++.+.+-|.+.+++..+
T Consensus 90 ~~~~~l~E~~a~~~~~s-n~i~~l~aa~i~~~~~~~deAl~~~~~~---~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 90 SILASLYELVADSTDGS-NLIDLLLAAIIYMHDGDFDEALKALHLG---ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHHHhhccch-hHHHHHHhhHHhhcCCChHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333333332222221 1123445588999999999999988772 2233444445678888999999999999988
Q ss_pred HccC-----CHHHHHHHHcc-CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHH
Q 002100 847 KARN-----NASAYEKRSEY-CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLH 919 (967)
Q Consensus 847 ~~p~-----~~~~~~~~~~~-~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~ 919 (967)
.+.+ .+.+|...+.- .+...|.-.|+..-+..|..+..+..+|.+.+.+++|++|...++.++..+++ ++.+.
T Consensus 166 ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 166 IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence 8765 35556665543 56889999999998877778899999999999999999999999999999988 67999
Q ss_pred HHHHHHHHcCChHHHHH-HHHHHHhcCCCchhHHHHHHH
Q 002100 920 LRAAFHDSMGDHLHTQR-DCEAALCLDPNHTDTLELYDK 957 (967)
Q Consensus 920 ~~a~~~~~~g~~~~A~~-~~~~al~~~P~~~~~l~l~~r 957 (967)
++-.+-..+|...++.. .+.+....+|+|+.+.++-.+
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~ek 284 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNEK 284 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 99888888888766654 556666778999977665443
No 167
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.2e-06 Score=91.01 Aligned_cols=125 Identities=18% Similarity=0.103 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhC---CCHHHHHHHHH
Q 002100 834 RKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDD---HKEAEAIAELS 906 (967)
Q Consensus 834 ~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~---g~~~eAi~~~~ 906 (967)
.+.-+.-++.-+..+|+++.-|..+|.. +++..|...|.+|+++.|+++..+..+|.+++.+ ....+|...|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3444445555556666666666666632 5666666666666666666666666666665554 34556666677
Q ss_pred HHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 002100 907 RAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKA 958 (967)
Q Consensus 907 kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~ 958 (967)
+++..+|.+ .+++.+|..++..|+|.+|...++..++..|.+..-..+..+.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 777777663 3666677777777777777777777776666655544444443
No 168
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.58 E-value=6.6e-08 Score=109.38 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=55.6
Q ss_pred CCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccc------------eEEeccCCCCHHHHHHHHHhHcCCC
Q 002100 253 DEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRRE------------KVNFSQNGISVEAMRAAEEFSRTKM 320 (967)
Q Consensus 253 ~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~------------~i~~~~~~~~~~~~~~~l~~~Yt~~ 320 (967)
+.+.||||.||++.|+|||.||++||++|+.+|...-.-+..+ +|.+.+ |.|..|+.+|+||||++
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~--i~p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVED--IPPLMFEILLHYIYTDT 633 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeecc--CCHHHHHHHHHHHhccc
Confidence 4679999999999999999999999999999997543332222 344655 99999999999999997
Q ss_pred C
Q 002100 321 L 321 (967)
Q Consensus 321 ~ 321 (967)
+
T Consensus 634 ~ 634 (1267)
T KOG0783|consen 634 L 634 (1267)
T ss_pred c
Confidence 6
No 169
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.58 E-value=4e-05 Score=79.41 Aligned_cols=184 Identities=23% Similarity=0.246 Sum_probs=120.1
Q ss_pred HHHHHHHHHhHhhCCC--CchhHHHHHHHHHhcCcHHHHHHHHHHHhc--cCC-ChhHHHHHHHHHHHhcCHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPT--LSYPYKYRAILLVEENKLAAAITEINRIIG--FKV-SPDCLELRAWISIALEDYDGALRDVR 610 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p-~~~~~~~la~~~~~~g~~~~A~~~~~ 610 (967)
..+...+...+...+. ....+...+..+...+++..++..+...+. ..+ ....+...+..+...+++..++..+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
T COG0457 40 AEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLE 119 (291)
T ss_pred HHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5666666677766665 367777888888888888888888888876 455 67788888888888888888888888
Q ss_pred HHHHhCCCchHHhhhhhhhhhHhh-hHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCC---CChHHHHHHHH
Q 002100 611 ALLTLDPSYMMFYGQLHGDNLVET-LQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDP---GKSLLRFRQSL 686 (967)
Q Consensus 611 ~al~l~p~~~~~~~~~~~~~~~~~-l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p---~~~~~~~~~g~ 686 (967)
+++...+...... ..... ++...++++.+ +..+.+++..+| .........+.
T Consensus 120 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~a------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 120 KALALDPDPDLAE------ALLALGALYELGDYEEA------------------LELYEKALELDPELNELAEALLALGA 175 (291)
T ss_pred HHHcCCCCcchHH------HHHHHHHHHHcCCHHHH------------------HHHHHHHHhcCCCccchHHHHHHhhh
Confidence 8888777653333 22223 45555555555 555665555444 23334444444
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 687 LLLRLNSQKAAMRSLRLARNYSTS-EHEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 687 ~~~~~g~~~~A~~~l~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
.+...++++.|+..+.+++...+. ....+..++..+...+++++|+..+.+++...|
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence 455556666666666666666666 455566666666666666666666666665555
No 170
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=0.00056 Score=74.53 Aligned_cols=378 Identities=14% Similarity=0.059 Sum_probs=233.2
Q ss_pred hhHHHHHHHHHhcC--cHHHHHHHHHHHhccCC----ChhHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCCchHHh-hh
Q 002100 554 YPYKYRAILLVEEN--KLAAAITEINRIIGFKV----SPDCLELRAWIS-IALEDYDGALRDVRALLTLDPSYMMFY-GQ 625 (967)
Q Consensus 554 ~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p----~~~~~~~la~~~-~~~g~~~~A~~~~~~al~l~p~~~~~~-~~ 625 (967)
.++..+|..+...+ +...++++++..+...| .......+|.+. .-..+.+.|...++++..+...-+.++ .+
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 45667788888888 89999999999999988 244566666654 457899999999999998754444443 11
Q ss_pred hhhhhhHhhhHHHhh-chhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChH----HHHHHHHHHHHhcCHHHHHHH
Q 002100 626 LHGDNLVETLQPLVQ-QWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSL----LRFRQSLLLLRLNSQKAAMRS 700 (967)
Q Consensus 626 ~~~~~~~~~l~~~~~-~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~----~~~~~g~~~~~~g~~~~A~~~ 700 (967)
..+..+++.++.+.. .++.+ -..+.+++++....+. +.+.++.++.-.+++..|++.
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~------------------KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPA------------------KALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchH------------------HHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHH
Confidence 222356666666655 33344 6778888888766653 567889999999999999998
Q ss_pred HHHHHhcCCchhHHH----HH--HHHHHHHc---CChHHHHHHHHHHHhcccchHHH--HHHHH----HhhhcCCCCCch
Q 002100 701 LRLARNYSTSEHEKL----VY--EGWILYDT---GHREEALAKAEESISIQRSFEAF--FLKAY----ALADSSLNPESS 765 (967)
Q Consensus 701 l~~al~~~p~~~~a~----~~--lg~~~~~~---g~~~eA~~~~~~al~~~p~~~~~--~~~~~----~la~~~~~~~~~ 765 (967)
+.--.+....-...| +. .+.++... .+.+.+.....+..+....+... .++.+ .+ -.+..+++.
T Consensus 150 Lavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql-~yy~~~gq~ 228 (629)
T KOG2300|consen 150 LAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQL-SYYLLPGQV 228 (629)
T ss_pred HhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHH-HHHhcccch
Confidence 544333222222222 22 22333322 33444555555554433222211 12222 11 123445555
Q ss_pred HHHHHHHHHHhcCCCCC-----------------------Cc-hHHHHHHhHHH--HHhcccHHHHHHHHHHHhcc----
Q 002100 766 AYVIQLLEEALRCPSDG-----------------------LR-KGQALNNLGSV--YVDCEKLDLAADCYMNALNI---- 815 (967)
Q Consensus 766 ~~a~~~le~~~~~~~~~-----------------------~~-~~~a~~~lg~~--~~~~g~~~~A~~~~~~Al~~---- 815 (967)
..+...++++.+..... |. ...++..+-.+ -.-.|-+++|.++-++++..
T Consensus 229 rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~ekl 308 (629)
T KOG2300|consen 229 RTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKL 308 (629)
T ss_pred hhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhc
Confidence 56665555544322111 00 01111111111 12456778888887777761
Q ss_pred ---C-cH--------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---cC-------CHHHHHHHHcc----CChHHHHH
Q 002100 816 ---K-HT--------RAHQGLARVYHLKNQRKAAYDEMTKLIEKA---RN-------NASAYEKRSEY----CDRDMAKS 869 (967)
Q Consensus 816 ---~-~~--------~a~~~la~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~~~~~----~~~~~A~~ 869 (967)
+ .. ..+..++.+..-.|++.+|++....+.+.. |. .+.....+|.| +.++.|..
T Consensus 309 kq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~ 388 (629)
T KOG2300|consen 309 KQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEF 388 (629)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHH
Confidence 1 11 145557778888999999999887766543 33 34456667765 88999999
Q ss_pred HHHHhhccCCC-C--chHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--------hHHHHHHHHHHHHcCChHHHHHHH
Q 002100 870 DLSMATQLDPM-R--TYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD--------LQLLHLRAAFHDSMGDHLHTQRDC 938 (967)
Q Consensus 870 ~l~~al~l~p~-~--~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~--------~~~~~~~a~~~~~~g~~~~A~~~~ 938 (967)
.|..|+++-.. + +....++|.+|.+.++-+.--+.++..-..+.. ..+++..|.+.+.++++.+|...+
T Consensus 389 hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l 468 (629)
T KOG2300|consen 389 HFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFL 468 (629)
T ss_pred HHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999886432 3 334557899999988765544444433222111 127888999999999999999999
Q ss_pred HHHHhcCCCchhH
Q 002100 939 EAALCLDPNHTDT 951 (967)
Q Consensus 939 ~~al~~~P~~~~~ 951 (967)
++.|++. |..+.
T Consensus 469 ~e~Lkma-naed~ 480 (629)
T KOG2300|consen 469 RETLKMA-NAEDL 480 (629)
T ss_pred HHHHhhc-chhhH
Confidence 9999887 55444
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.56 E-value=1e-06 Score=87.93 Aligned_cols=74 Identities=12% Similarity=0.137 Sum_probs=34.9
Q ss_pred chHHHHHHHHhcCCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHH
Q 002100 662 GSLAVVHHMLANDPGK---SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKA 735 (967)
Q Consensus 662 ~al~~~~~~l~~~p~~---~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~ 735 (967)
.|+..+.++++..|+. ...++.+|.++...|++++|+..+++++...|.+...+..+|.++...|+...+...+
T Consensus 53 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 53 EALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCH
Confidence 3444455444443321 2344445555555555555555555555555554444444555554444444444333
No 172
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=0.00022 Score=81.73 Aligned_cols=295 Identities=15% Similarity=0.123 Sum_probs=166.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcH
Q 002100 490 YSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKL 569 (967)
Q Consensus 490 ~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 569 (967)
...+..|-+....|-.++|..+|++--. |.-+...|+..+.| ++|.+.-+.--.++ .-..|++.|..+...++.
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR-~DLlNKlyQs~g~w---~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKR-YDLLNKLYQSQGMW---SEAFEIAETKDRIH--LRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHhcccH---HHHHHHHhhcccee--hhhhHHHHHHHHHhhccH
Confidence 4444555566677777778777776422 22334455666655 55554433221111 234678888888888888
Q ss_pred HHHHHHHHHHh----------ccCC-----------ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhh
Q 002100 570 AAAITEINRII----------GFKV-----------SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHG 628 (967)
Q Consensus 570 ~~A~~~~~~al----------~~~p-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~ 628 (967)
+.|++.|+++- ..+| ++..|...|......|+.+.|+..|..+-..
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~------------- 941 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY------------- 941 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh-------------
Confidence 88888887652 2223 2335555677777778888888877766432
Q ss_pred hhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh--
Q 002100 629 DNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARN-- 706 (967)
Q Consensus 629 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~-- 706 (967)
+-+..+....|+.++|+ .+.....+..+.|.+|..|-..|+..+|+..|.+|-.
T Consensus 942 -fs~VrI~C~qGk~~kAa-----------------------~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafs 997 (1416)
T KOG3617|consen 942 -FSMVRIKCIQGKTDKAA-----------------------RIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFS 997 (1416)
T ss_pred -hhheeeEeeccCchHHH-----------------------HHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 12233444455555551 2233455666778888888888999999887776533
Q ss_pred ----cCCch--hHH------------HHHHHHHHHHcC-ChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHH
Q 002100 707 ----YSTSE--HEK------------LVYEGWILYDTG-HREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAY 767 (967)
Q Consensus 707 ----~~p~~--~~a------------~~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~ 767 (967)
+..++ .+- +...+..|...| +.+.|...|.+|=-+ .++..+|-.... -.
T Consensus 998 nAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~--------~kALelAF~tqQ----f~ 1065 (1416)
T KOG3617|consen 998 NAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMI--------GKALELAFRTQQ----FS 1065 (1416)
T ss_pred HHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcch--------HHHHHHHHhhcc----cH
Confidence 22221 111 223344555555 677777777665322 222222211111 11
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHH------hcc--C--------------------cH-
Q 002100 768 VIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNA------LNI--K--------------------HT- 818 (967)
Q Consensus 768 a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~A------l~~--~--------------------~~- 818 (967)
+++++.+-+ +...++..+...+..+....+|++|+..+-.+ +.+ + ++
T Consensus 1066 aL~lIa~DL----d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e 1141 (1416)
T KOG3617|consen 1066 ALDLIAKDL----DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNE 1141 (1416)
T ss_pred HHHHHHHhc----CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccH
Confidence 222222111 22233456666677777777777777655333 220 0 00
Q ss_pred ----HHHHHHHHHHHHhCCHHHHHHHHHH
Q 002100 819 ----RAHQGLARVYHLKNQRKAAYDEMTK 843 (967)
Q Consensus 819 ----~a~~~la~~~~~~g~~~~A~~~~~~ 843 (967)
..+..+|.+..++|.|..|-+-|++
T Consensus 1142 ~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1142 QERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 2677788888888888888777763
No 173
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.5e-06 Score=90.15 Aligned_cols=120 Identities=15% Similarity=0.081 Sum_probs=90.2
Q ss_pred hHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc---CHHHHHHHHH
Q 002100 535 GKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE---DYDGALRDVR 610 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g---~~~~A~~~~~ 610 (967)
.+..+.-++..+..||++++.|..+|.+|+.+|+++.|...|.+++++.| +++.+..+|.++.... ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 46667777777888888888888888888888888888888888888888 7888888877776553 3456777777
Q ss_pred HHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh
Q 002100 611 ALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS 678 (967)
Q Consensus 611 ~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~ 678 (967)
+++.++|++..+. ++++..+...++|.+| +..++.+++..|.+.
T Consensus 218 ~al~~D~~~iral------~lLA~~afe~g~~~~A------------------~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPANIRAL------SLLAFAAFEQGDYAEA------------------AAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCccHHHH------HHHHHHHHHcccHHHH------------------HHHHHHHHhcCCCCC
Confidence 7777777777777 6677777777777777 677777777666543
No 174
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.54 E-value=9.2e-05 Score=76.63 Aligned_cols=222 Identities=23% Similarity=0.253 Sum_probs=149.9
Q ss_pred cCcHHHHHHHHHHHhccCCC---hhHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCchHHhhhhhhhhhHhhhHHHhh
Q 002100 566 ENKLAAAITEINRIIGFKVS---PDCLELRAWISIALEDYDGALRDVRALLT--LDPSYMMFYGQLHGDNLVETLQPLVQ 640 (967)
Q Consensus 566 ~g~~~~A~~~~~~al~~~p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~~~~~l~~~~~ 640 (967)
.+.+..+...+...+...+. .......+..+...+++..+...+...+. ..+.....+ ...+......+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 109 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEAL------LNLGLLLEALG 109 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHH------HHHHHHHHHHh
Confidence 46777788888888877773 57788888888888888888888888876 455555555 45556666666
Q ss_pred chhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCC---chhHHHH
Q 002100 641 QWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSL-LLLRLNSQKAAMRSLRLARNYST---SEHEKLV 716 (967)
Q Consensus 641 ~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~-~~~~~g~~~~A~~~l~~al~~~p---~~~~a~~ 716 (967)
++..+ +..+.+.+...+.........+. ++...++++.|...+++++...| .....+.
T Consensus 110 ~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 171 (291)
T COG0457 110 KYEEA------------------LELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALL 171 (291)
T ss_pred hHHHH------------------HHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 66666 67777777766665444444555 67777777777777777766655 3445555
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHH
Q 002100 717 YEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVY 796 (967)
Q Consensus 717 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~ 796 (967)
..+..+...+++++|+..+.+++...+.. ....+..++..+
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~ 212 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKLNPDD---------------------------------------DAEALLNLGLLY 212 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhhCccc---------------------------------------chHHHHHhhHHH
Confidence 55566666777777777777777666631 114566667777
Q ss_pred HhcccHHHHHHHHHHHhccCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002100 797 VDCEKLDLAADCYMNALNIKHT--RAHQGLARVYHLKNQRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 797 ~~~g~~~~A~~~~~~Al~~~~~--~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 850 (967)
...+++++|+..+..++...+. ..+..++..+...+.++++...+.+++...|.
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 7777777777777777775543 45555666666555667777777666666664
No 175
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.54 E-value=1.5e-06 Score=91.81 Aligned_cols=113 Identities=9% Similarity=0.107 Sum_probs=92.0
Q ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCH
Q 002100 820 AHQGLARVY-HLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKE 898 (967)
Q Consensus 820 a~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~ 898 (967)
..+..|..+ ...|++++|+..|++.++.+|++ +..+.+++.+|.+|+..|++
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s---------------------------~~a~~A~y~LG~~y~~~g~~ 196 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS---------------------------TYQPNANYWLGQLNYNKGKK 196 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---------------------------cchHHHHHHHHHHHHHcCCH
Confidence 444555544 45577777777777777776642 22256788999999999999
Q ss_pred HHHHHHHHHHHhcCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 002100 899 AEAIAELSRAIAFKPD----LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 899 ~eAi~~~~kal~~~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~ 959 (967)
++|+..|+++++..|+ +++++.+|.++..+|++++|+..|+++++.+|+.........|+.
T Consensus 197 ~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL~ 261 (263)
T PRK10803 197 DDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRLN 261 (263)
T ss_pred HHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHHh
Confidence 9999999999999888 459999999999999999999999999999999998877777664
No 176
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.53 E-value=8.2e-07 Score=77.70 Aligned_cols=98 Identities=21% Similarity=0.271 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcC
Q 002100 680 LRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSS 759 (967)
Q Consensus 680 ~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~ 759 (967)
.++.+|..+...|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------- 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------------- 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch-------------
Confidence 3566778888888888888888888888888777888888888888888888888888887776433
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc
Q 002100 760 LNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH 817 (967)
Q Consensus 760 ~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~ 817 (967)
.++..+|.++...|++++|...+.++++..+
T Consensus 69 ---------------------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 69 ---------------------------KAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred ---------------------------hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 5677777777888888888888777776443
No 177
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=7.8e-05 Score=85.31 Aligned_cols=291 Identities=16% Similarity=0.085 Sum_probs=165.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHH
Q 002100 591 LRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHM 670 (967)
Q Consensus 591 ~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~ 670 (967)
..|.+..++|-.++|+..|++.-.. -++..+|...+.|++| ++..+.-
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~--------------DLlNKlyQs~g~w~eA------------------~eiAE~~ 852 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRY--------------DLLNKLYQSQGMWSEA------------------FEIAETK 852 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH--------------HHHHHHHHhcccHHHH------------------HHHHhhc
Confidence 3455666777777777777766432 2345567777777777 2221110
Q ss_pred HhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH----------HhcCCc----------hhHHHHHHHHHHHHcCChHH
Q 002100 671 LANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLA----------RNYSTS----------EHEKLVYEGWILYDTGHREE 730 (967)
Q Consensus 671 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~a----------l~~~p~----------~~~a~~~lg~~~~~~g~~~e 730 (967)
-. -.....|++.+..+...++.+.|++.|+++ +..+|. +...|...|..+...|+.+.
T Consensus 853 DR--iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 853 DR--IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred cc--eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHH
Confidence 00 112234566666666777777777777654 223333 33456677888889999999
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHH
Q 002100 731 ALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYM 810 (967)
Q Consensus 731 A~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~ 810 (967)
|+..|..|-.... +....--.++.+++..+.++.. +..+-+.+|..|...|+..+|+..|.
T Consensus 931 Al~~Y~~A~D~fs-----------~VrI~C~qGk~~kAa~iA~esg--------d~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 931 ALSFYSSAKDYFS-----------MVRIKCIQGKTDKAARIAEESG--------DKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred HHHHHHHhhhhhh-----------heeeEeeccCchHHHHHHHhcc--------cHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999998863221 1111112233444444433321 22477889999999999999999998
Q ss_pred HHhccCcH----------HH------------HHHHHHHHHHhC-CHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHH
Q 002100 811 NALNIKHT----------RA------------HQGLARVYHLKN-QRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMA 867 (967)
Q Consensus 811 ~Al~~~~~----------~a------------~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A 867 (967)
+|-...+. +- ....|+.|...| +.+.|...|.++--+... + .++-.-+.-.|
T Consensus 992 rAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kA----L-elAF~tqQf~a 1066 (1416)
T KOG3617|consen 992 RAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKA----L-ELAFRTQQFSA 1066 (1416)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHH----H-HHHHhhcccHH
Confidence 87652211 11 112333344444 444555444433111100 0 00000111122
Q ss_pred HHHHHHhhccCCC-CchHHHHHHHHHHhCCCHHHHHHHHH------HHHhcC----------------CC----h-----
Q 002100 868 KSDLSMATQLDPM-RTYPYRYRAAVLMDDHKEAEAIAELS------RAIAFK----------------PD----L----- 915 (967)
Q Consensus 868 ~~~l~~al~l~p~-~~~~~~~la~~~~~~g~~~eAi~~~~------kal~~~----------------p~----~----- 915 (967)
++.. +-.++|+ ++..+..-+..+....+|++|+..+- .|+++. |. +
T Consensus 1067 L~lI--a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R 1144 (1416)
T KOG3617|consen 1067 LDLI--AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQER 1144 (1416)
T ss_pred HHHH--HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHH
Confidence 3322 2245665 45555555667777788998887653 444321 11 1
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 916 -QLLHLRAAFHDSMGDHLHTQRDCEAA 941 (967)
Q Consensus 916 -~~~~~~a~~~~~~g~~~~A~~~~~~a 941 (967)
+++..+|.+..++|.|..|-+-|.+|
T Consensus 1145 ~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1145 KQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 27888999999999999999888876
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.50 E-value=2.4e-06 Score=84.86 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHH
Q 002100 820 AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEA 899 (967)
Q Consensus 820 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~ 899 (967)
.+..+|.++..+|++++|+..|++++...|+. +..+.++.++|.++...|+++
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~---------------------------~~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP---------------------------YDRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccc---------------------------hhhHHHHHHHHHHHHHcCCHH
Confidence 66777777877888888777777777664421 112346677777777777777
Q ss_pred HHHHHHHHHHhcCCCh-HHHHHHHHHHH-------HcCChH-------HHHHHHHHHHhcCCCch
Q 002100 900 EAIAELSRAIAFKPDL-QLLHLRAAFHD-------SMGDHL-------HTQRDCEAALCLDPNHT 949 (967)
Q Consensus 900 eAi~~~~kal~~~p~~-~~~~~~a~~~~-------~~g~~~-------~A~~~~~~al~~~P~~~ 949 (967)
+|+..+++++++.|.. ..+..+|.++. .+|+++ +|+..|++++..+|++.
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 7777777777777763 34555555555 666655 55666667778887654
No 179
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.50 E-value=1.4e-05 Score=75.99 Aligned_cols=149 Identities=19% Similarity=0.140 Sum_probs=120.4
Q ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCCh
Q 002100 788 ALNNLGSVYVDCEKLDLAADCYMNALN---IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDR 864 (967)
Q Consensus 788 a~~~lg~~~~~~g~~~~A~~~~~~Al~---~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 864 (967)
-.+.||....+.|++.+|...|++++. -+....+.++|+..+..+++..|...++++.+.+|.
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa-------------- 156 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA-------------- 156 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc--------------
Confidence 456788999999999999999999998 445568999999999999999999999888887773
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHH---
Q 002100 865 DMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAA--- 941 (967)
Q Consensus 865 ~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~a--- 941 (967)
-..++....+|.+|...|++.+|...|+.++...|++++....+..+.++|+..+|...+..+
T Consensus 157 --------------~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 157 --------------FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred --------------cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 234567778899999999999999999999999999998888899999999888887766554
Q ss_pred -HhcCCCch-hHHHHHHHHHhhhhh
Q 002100 942 -LCLDPNHT-DTLELYDKATERVNE 964 (967)
Q Consensus 942 -l~~~P~~~-~~l~l~~r~~~~~~~ 964 (967)
..-.|... .-.+.++++.++.++
T Consensus 223 ~~r~~~H~rkh~reW~~~A~~~~~q 247 (251)
T COG4700 223 AKRSRPHYRKHHREWIKTANERLKQ 247 (251)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHh
Confidence 33344433 345566666665554
No 180
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.49 E-value=4e-06 Score=80.94 Aligned_cols=77 Identities=22% Similarity=0.199 Sum_probs=56.8
Q ss_pred HHHHHHHHHhHhhCCCC---chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTL---SYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRA 611 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~ 611 (967)
++|+..|++++...|+. ..+.+.+|.+++..|++++|+..++.+ ...+ .+.++..+|.+|...|++++|+..|++
T Consensus 65 ~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 65 DEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44444444444443332 235667899999999999999999773 3333 778899999999999999999999998
Q ss_pred HH
Q 002100 612 LL 613 (967)
Q Consensus 612 al 613 (967)
+|
T Consensus 144 Al 145 (145)
T PF09976_consen 144 AL 145 (145)
T ss_pred hC
Confidence 74
No 181
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.48 E-value=0.00078 Score=76.28 Aligned_cols=342 Identities=13% Similarity=0.043 Sum_probs=164.2
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHH
Q 002100 458 LAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKE 537 (967)
Q Consensus 458 ~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~ 537 (967)
..|-.-|.+|.+..++++|.++|++--..+. ...||+.. .-.+++..-..+|.-+...++| +.
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~k---aielarfa-----------fp~evv~lee~wg~hl~~~~q~---da 724 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGK---AIELARFA-----------FPEEVVKLEEAWGDHLEQIGQL---DA 724 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHH---HHHHHHhh-----------CcHHHhhHHHHHhHHHHHHHhH---HH
Confidence 3444556666666677777777664322111 11122211 0111222222345555555555 77
Q ss_pred HHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 002100 538 KMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDP 617 (967)
Q Consensus 538 A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 617 (967)
|+..|-+|-- ...--.......+|.+|+..++.+...+.....|-..+.-|...|+|+-|.+.|.++=..+
T Consensus 725 ainhfiea~~--------~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~- 795 (1636)
T KOG3616|consen 725 AINHFIEANC--------LIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFK- 795 (1636)
T ss_pred HHHHHHHhhh--------HHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhH-
Confidence 7777665422 1222334556678888888887776655556667778888888999999888886652111
Q ss_pred CchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHH
Q 002100 618 SYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAA 697 (967)
Q Consensus 618 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A 697 (967)
++ -..|...++|.+|-.+.+-+. ..++ ....++.++-+++.. --+...-.+|...|.++.|
T Consensus 796 ---da----------i~my~k~~kw~da~kla~e~~---~~e~-t~~~yiakaedldeh--gkf~eaeqlyiti~~p~~a 856 (1636)
T KOG3616|consen 796 ---DA----------IDMYGKAGKWEDAFKLAEECH---GPEA-TISLYIAKAEDLDEH--GKFAEAEQLYITIGEPDKA 856 (1636)
T ss_pred ---HH----------HHHHhccccHHHHHHHHHHhc---Cchh-HHHHHHHhHHhHHhh--cchhhhhheeEEccCchHH
Confidence 11 133556667776621111111 1100 011112222222211 0111222344555666666
Q ss_pred HHHHHHHH----------hcCCc-hhHHHHHHHHHHHHcCChHHHHHHHHHHHhc------ccchHHHHHHHHHhhhcCC
Q 002100 698 MRSLRLAR----------NYSTS-EHEKLVYEGWILYDTGHREEALAKAEESISI------QRSFEAFFLKAYALADSSL 760 (967)
Q Consensus 698 ~~~l~~al----------~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~~~~la~~~~ 760 (967)
+..|.+.- +..|+ ..+....+|.-|...|+..+|...|-++-.. .... ..+..+|.++.+..
T Consensus 857 iqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s-~lw~dayriakteg 935 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKAS-ELWEDAYRIAKTEG 935 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhh-hhHHHHHHHHhccc
Confidence 66655431 22333 2466778888899999999998888765422 2211 12344555554332
Q ss_pred CCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHH------HHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCH
Q 002100 761 NPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSV------YVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQR 834 (967)
Q Consensus 761 ~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~------~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~ 834 (967)
.......+.-+..+ ..........++..|.+ ....+-++-|.+.-+-+.+-.....+..+|..+...|++
T Consensus 936 g~n~~k~v~flwak----siggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~ 1011 (1636)
T KOG3616|consen 936 GANAEKHVAFLWAK----SIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKF 1011 (1636)
T ss_pred cccHHHHHHHHHHH----hhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccch
Confidence 21111111111000 00000011112222211 122333444444444444433444666666666666666
Q ss_pred HHHHHHHHHHHHHcc
Q 002100 835 KAAYDEMTKLIEKAR 849 (967)
Q Consensus 835 ~~A~~~~~~al~~~p 849 (967)
++|-+.|-.+|+++.
T Consensus 1012 edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 1012 EDASKHYVEAIKLNT 1026 (1636)
T ss_pred hhhhHhhHHHhhccc
Confidence 666666666666554
No 182
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.47 E-value=0.0012 Score=77.41 Aligned_cols=400 Identities=14% Similarity=0.043 Sum_probs=222.3
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
.+|++...+.++..|+...+....|.++.++|+.++|...++..-...+ +...+..+-.+|..++++++|...|++++.
T Consensus 26 kkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~ 105 (932)
T KOG2053|consen 26 KKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQ 105 (932)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 8888888888888888888888888888888888888877776666666 667777888888888888888888888888
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhhchhhH-hhHHHHHhhhcc------------------ccc-------cchHHHHH
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQQWSQA-DCWMQLYDRWSS------------------VDD-------IGSLAVVH 668 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A-~~~~~l~~~~~~------------------~d~-------~~al~~~~ 668 (967)
.+|+....+ .+=..|.+.+.|.+- ..=+++|..... .+. .-|-..++
T Consensus 106 ~~P~eell~-------~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 106 KYPSEELLY-------HLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred hCCcHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 888833222 112233333333321 111444432111 000 01222334
Q ss_pred HHHhcC-CCChHH-HHHHHHHHHHhcCHHHHHHHHHH-HHh-cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccc
Q 002100 669 HMLAND-PGKSLL-RFRQSLLLLRLNSQKAAMRSLRL-ARN-YSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRS 744 (967)
Q Consensus 669 ~~l~~~-p~~~~~-~~~~g~~~~~~g~~~~A~~~l~~-al~-~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 744 (967)
+.++.. +-.... ....-.++..++++++|...+.. ..+ ..+.+......-...+...+++.+-.+...+++...++
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 444444 111111 11223455668899999998832 333 33333334445567778889999999999999988887
Q ss_pred h-HHHHHHHHHhhhcC-C-----CCCchHHHHHHHHHHhcCCCC---CCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc
Q 002100 745 F-EAFFLKAYALADSS-L-----NPESSAYVIQLLEEALRCPSD---GLRKGQALNNLGSVYVDCEKLDLAADCYMNALN 814 (967)
Q Consensus 745 ~-~~~~~~~~~la~~~-~-----~~~~~~~a~~~le~~~~~~~~---~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 814 (967)
+ ..++...+.+-... . ........-...+.+.+...+ +|.. +...+-.-+..-|+.+++...|-+-..
T Consensus 259 dy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~L--A~lel~kr~~~~gd~ee~~~~y~~kfg 336 (932)
T KOG2053|consen 259 DYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYL--ARLELDKRYKLIGDSEEMLSYYFKKFG 336 (932)
T ss_pred chHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHH--HHHHHHHHhcccCChHHHHHHHHHHhC
Confidence 4 22222222222111 1 111111222222333333333 2222 223333333466888887766644332
Q ss_pred cCc--------------HH------------------------HHHHHHHHHHHhCCH-----HHHHHHHHHHHH-----
Q 002100 815 IKH--------------TR------------------------AHQGLARVYHLKNQR-----KAAYDEMTKLIE----- 846 (967)
Q Consensus 815 ~~~--------------~~------------------------a~~~la~~~~~~g~~-----~~A~~~~~~al~----- 846 (967)
..+ .+ .+...-.+....|.+ +.-...+++...
T Consensus 337 ~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~g 416 (932)
T KOG2053|consen 337 DKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKG 416 (932)
T ss_pred CCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcc
Confidence 110 00 111111222233321 111222222211
Q ss_pred --H----ccC---CHHHHHHHH------------ccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHH
Q 002100 847 --K----ARN---NASAYEKRS------------EYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAEL 905 (967)
Q Consensus 847 --~----~p~---~~~~~~~~~------------~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~ 905 (967)
. .|. ..+.+..++ ..+..-+|+-.++..+..+|.+...-..+-.+|...|-+..|.+.|
T Consensus 417 ls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y 496 (932)
T KOG2053|consen 417 LSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELY 496 (932)
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHH
Confidence 1 111 222333332 1145678999999999999999999999999999999999999988
Q ss_pred HHHHhcCC-C-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 906 SRAIAFKP-D-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 906 ~kal~~~p-~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
... .+.. . ...-+.+-..+...|++..|...+...+...
T Consensus 497 ~tL-dIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy 537 (932)
T KOG2053|consen 497 KTL-DIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFY 537 (932)
T ss_pred Hhc-chHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 643 2211 1 1233334455566677777777777666554
No 183
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=7.1e-05 Score=75.70 Aligned_cols=252 Identities=14% Similarity=0.118 Sum_probs=169.7
Q ss_pred HHhhcCChHHHHHHHHHHHHh-CchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcC----ChHHHHH
Q 002100 466 VMLEREEYKDAQNWFKAAVEA-GHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYC----SGKEKMM 540 (967)
Q Consensus 466 ~~~~~g~y~~A~~~f~~al~~-~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~----~~~~A~~ 540 (967)
-++-.|.|..++..-++.-.. +......++++.|..+|++...+..+...- .+++.. ......|. +.+.-+.
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~lqA-vr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGK--ATPLQA-VRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccccc--CChHHH-HHHHHHHhhCcchhHHHHH
Confidence 355567888887776665555 446667788888888887653332222111 111111 11111111 1122233
Q ss_pred HHHHhHhh--CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002100 541 DLNTATEL--DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPS 618 (967)
Q Consensus 541 ~~~~al~l--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 618 (967)
.+.+.+.. ..++.-....-|.+++..+++++|++...+. .+.++...--.++.++.+.+-|...+++..+++.+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided 169 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED 169 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 33332221 2233345566678999999999999887662 25667777788999999999999999999988876
Q ss_pred chHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHH
Q 002100 619 YMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAM 698 (967)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~ 698 (967)
..... .|..|+.+...-+.. ..|.-+|+.+-+..|..+.....++.+.+.+++|++|.
T Consensus 170 ~tLtQ--------------------LA~awv~la~ggek~--qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe 227 (299)
T KOG3081|consen 170 ATLTQ--------------------LAQAWVKLATGGEKI--QDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAE 227 (299)
T ss_pred HHHHH--------------------HHHHHHHHhccchhh--hhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHH
Confidence 44332 233344444433333 33588888888878888999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHH-HHHHhcccchH
Q 002100 699 RSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKA-EESISIQRSFE 746 (967)
Q Consensus 699 ~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~-~~al~~~p~~~ 746 (967)
..++.++..++++++++.++-.+-..+|...++...+ .+....+|+.+
T Consensus 228 ~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 228 SLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 9999999999999999999999999999987776555 45555566544
No 184
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.45 E-value=7e-07 Score=77.21 Aligned_cols=81 Identities=14% Similarity=0.122 Sum_probs=65.5
Q ss_pred hcCHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHH
Q 002100 691 LNSQKAAMRSLRLARNYSTS--EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYV 768 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~p~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a 768 (967)
+|+++.|+..++++++..|. +...++.+|.+++.+|++++|+..+++ ...++.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~---------------------- 58 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP---------------------- 58 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH----------------------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH----------------------
Confidence 57899999999999999885 566777789999999999999999988 66666443
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHH
Q 002100 769 IQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNA 812 (967)
Q Consensus 769 ~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~A 812 (967)
...+.+|.++..+|++++|++.|+++
T Consensus 59 ------------------~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 59 ------------------DIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp ------------------HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 56667799999999999999998875
No 185
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.45 E-value=3.7e-07 Score=78.93 Aligned_cols=78 Identities=22% Similarity=0.237 Sum_probs=69.0
Q ss_pred ChHHHHHHHHHhHhhCCC--CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPT--LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVR 610 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~ 610 (967)
+++.|+..++++++.+|+ +...++.+|.+++..|+|++|+..+++ .+.+| +....+.+|.++..+|+|++|++.++
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 449999999999999995 456788899999999999999999999 77888 77888899999999999999999998
Q ss_pred HH
Q 002100 611 AL 612 (967)
Q Consensus 611 ~a 612 (967)
++
T Consensus 83 ~~ 84 (84)
T PF12895_consen 83 KA 84 (84)
T ss_dssp HH
T ss_pred cC
Confidence 75
No 186
>PRK11906 transcriptional regulator; Provisional
Probab=98.44 E-value=7.7e-06 Score=90.12 Aligned_cols=139 Identities=12% Similarity=0.009 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHH---HhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhcc--ccc
Q 002100 589 LELRAWISIALE---DYDGALRDVRALL---TLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSS--VDD 660 (967)
Q Consensus 589 ~~~la~~~~~~g---~~~~A~~~~~~al---~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~--~d~ 660 (967)
++.+|...+..+ ..+.|+..|.+++ .++|++..++. .++.++... .+..|.. .+-
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~------~lA~~h~~~-----------~~~g~~~~~~~~ 320 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYC------LLAECHMSL-----------ALHGKSELELAA 320 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHH------HHHHHHHHH-----------HHhcCCCchHHH
Confidence 377777776554 4567899999999 99999998883 223333221 1222322 223
Q ss_pred cchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 661 IGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESIS 740 (967)
Q Consensus 661 ~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 740 (967)
.+++....++++++|.++.+++.+|.++...++++.|+..|++|+.++|+.+.+++..|++....|+.++|++.++++++
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 002100 741 IQRS 744 (967)
Q Consensus 741 ~~p~ 744 (967)
++|.
T Consensus 401 LsP~ 404 (458)
T PRK11906 401 LEPR 404 (458)
T ss_pred cCch
Confidence 9994
No 187
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.44 E-value=0.00017 Score=76.45 Aligned_cols=281 Identities=13% Similarity=0.054 Sum_probs=197.7
Q ss_pred ChHHHHHHHHHhHhhCCCCchh--HHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHH--HHhcCHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYP--YKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWIS--IALEDYDGALRDV 609 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~--~~~g~~~~A~~~~ 609 (967)
|...|...-.++-++-..+.++ +..-+..-+-.|+++.|.+-|+..+. +|....+-++|... ..+|+.+.|..+-
T Consensus 99 da~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yA 177 (531)
T COG3898 99 DASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYA 177 (531)
T ss_pred chHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHH
Confidence 4455555555555444444443 34456777788999999999987765 45433344444433 4579999999999
Q ss_pred HHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc---CCCC-----hHHH
Q 002100 610 RALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN---DPGK-----SLLR 681 (967)
Q Consensus 610 ~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~---~p~~-----~~~~ 681 (967)
+.+....|.-+.+.. ..-......|+|+.| |...+...+. .++. ..++
T Consensus 178 e~Aa~~Ap~l~WA~~------AtLe~r~~~gdWd~A------------------lkLvd~~~~~~vie~~~aeR~rAvLL 233 (531)
T COG3898 178 ERAAEKAPQLPWAAR------ATLEARCAAGDWDGA------------------LKLVDAQRAAKVIEKDVAERSRAVLL 233 (531)
T ss_pred HHHHhhccCCchHHH------HHHHHHHhcCChHHH------------------HHHHHHHHHHHhhchhhHHHHHHHHH
Confidence 999999999888872 223344566888888 4444432221 1211 1122
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCC
Q 002100 682 FRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLN 761 (967)
Q Consensus 682 ~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~ 761 (967)
...+.... .-+...|...-.++.++.|+...+-..-+..++..|+..++-..++.+-+..|... ++..+..
T Consensus 234 tAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--------ia~lY~~ 304 (531)
T COG3898 234 TAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--------IALLYVR 304 (531)
T ss_pred HHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--------HHHHHHH
Confidence 22222222 24588888899999999999988888899999999999999999999999998654 2222222
Q ss_pred CCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH-HHHHHHHHHHHh-CCHHHHHH
Q 002100 762 PESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR-AHQGLARVYHLK-NQRKAAYD 839 (967)
Q Consensus 762 ~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~-a~~~la~~~~~~-g~~~~A~~ 839 (967)
....+.++..++++.+..+-.+.........+...+..|++..|..--+.+....+.. ++..|+++.... |+-.++..
T Consensus 305 ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~ 384 (531)
T COG3898 305 ARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQ 384 (531)
T ss_pred hcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHH
Confidence 3333556666777666666677777888888888899999999999998888888776 777788888766 99999999
Q ss_pred HHHHHHHHc
Q 002100 840 EMTKLIEKA 848 (967)
Q Consensus 840 ~~~~al~~~ 848 (967)
++.++++--
T Consensus 385 wlAqav~AP 393 (531)
T COG3898 385 WLAQAVKAP 393 (531)
T ss_pred HHHHHhcCC
Confidence 999888743
No 188
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.43 E-value=2.8e-06 Score=74.22 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=9.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 592 RAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 592 la~~~~~~g~~~~A~~~~~~al~l 615 (967)
+|.++...|++++|+..++++++.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~ 29 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL 29 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc
Confidence 333333333333333333333333
No 189
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.42 E-value=7.5e-05 Score=90.38 Aligned_cols=225 Identities=15% Similarity=0.098 Sum_probs=173.6
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCchh----HHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 663 SLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNY-STSEH----EKLVYEGWILYDTGHREEALAKAEE 737 (967)
Q Consensus 663 al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~-~p~~~----~a~~~lg~~~~~~g~~~eA~~~~~~ 737 (967)
..+.|.+.+..+|+.+..|.+.-..+++.++.++|.+..++|+.. ++... ..|..+-+....-|.-+.-.+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 467888888889998888888888888889999999998888863 34322 2333333333344555566667777
Q ss_pred HHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc-C
Q 002100 738 SISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI-K 816 (967)
Q Consensus 738 al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~-~ 816 (967)
|-+....+ ..|..|..+|...+++++|.++|+..++. +
T Consensus 1523 Acqycd~~-----------------------------------------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~ 1561 (1710)
T KOG1070|consen 1523 ACQYCDAY-----------------------------------------TVHLKLLGIYEKSEKNDEADELLRLMLKKFG 1561 (1710)
T ss_pred HHHhcchH-----------------------------------------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc
Confidence 66443211 46788889999999999999999999983 3
Q ss_pred -cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC--CHHHHHHHH----ccCChHHHHHHHHHhhccCCCCchHHHHHH
Q 002100 817 -HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARN--NASAYEKRS----EYCDRDMAKSDLSMATQLDPMRTYPYRYRA 889 (967)
Q Consensus 817 -~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~----~~~~~~~A~~~l~~al~l~p~~~~~~~~la 889 (967)
....|...|..++.+++-++|...+.+|++..|. +.......+ .+|+.+.+...|+-.+..+|...+.|.-+.
T Consensus 1562 q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1562 QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence 3459999999999999999999999999999997 444444444 249999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCChH---HHHHHHHHHHHc
Q 002100 890 AVLMDDHKEAEAIAELSRAIAFKPDLQ---LLHLRAAFHDSM 928 (967)
Q Consensus 890 ~~~~~~g~~~eAi~~~~kal~~~p~~~---~~~~~a~~~~~~ 928 (967)
..-++.|+.+.+...|++++.+.-.+. .++.+-.-|++.
T Consensus 1642 d~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 999999999999999999998775532 444444445544
No 190
>PRK15331 chaperone protein SicA; Provisional
Probab=98.42 E-value=7.7e-06 Score=77.74 Aligned_cols=116 Identities=9% Similarity=-0.000 Sum_probs=92.2
Q ss_pred hchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhh
Q 002100 452 ESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSL 531 (967)
Q Consensus 452 ~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~ 531 (967)
-..+.....|..|.-++..|+|++|...|+-..-.+|....+.++. |.+++.++.
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GL-------------------------aa~~Q~~k~ 86 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGL-------------------------AAVCQLKKQ 86 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHH-------------------------HHHHHHHHH
Confidence 3455667889999999999999999999999888877444444444 556777777
Q ss_pred cCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 002100 532 YCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWIS 596 (967)
Q Consensus 532 y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~ 596 (967)
| ++|+..|..+..++++++.+.+..|.+++.+|+.+.|+..|..++. .|....+..+|..+
T Consensus 87 y---~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~ 147 (165)
T PRK15331 87 F---QKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVY 147 (165)
T ss_pred H---HHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHH
Confidence 7 9999999999999999999999999999999999999999999988 44333344444443
No 191
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=4.3e-06 Score=80.31 Aligned_cols=106 Identities=18% Similarity=0.223 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCCh
Q 002100 456 KQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSG 535 (967)
Q Consensus 456 ~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~ 535 (967)
++.-+..-|.-+|..|+|++|..-|..||...|....-..+.+ |.+.+.+..++..+
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIl--------------------y~Nraaa~iKl~k~--- 150 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSIL--------------------YSNRAAALIKLRKW--- 150 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHH--------------------HhhhHHHHHHhhhH---
Confidence 3445566788999999999999999999998763322211111 22334444455544
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV 584 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 584 (967)
+.|+.+..+||+++|++..++..+|.+|.++.+|++|++.|.++++.+|
T Consensus 151 e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 151 ESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 5555555555555555555555555555555555555555555555555
No 192
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.40 E-value=2.3e-05 Score=79.77 Aligned_cols=203 Identities=14% Similarity=0.101 Sum_probs=140.2
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE---HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
+..++..|...++.|++++|++.|+.+....|.. ..+.+.++.++++.+++++|+...++-+.+.|.++
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~-------- 105 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP-------- 105 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC--------
Confidence 4567888888889999999999999988887765 46788888899999999999999999988888544
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCH
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQR 834 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~ 834 (967)
....+++..|.+++.. +-+....+.-.
T Consensus 106 -----------------------------n~dY~~YlkgLs~~~~------------------------i~~~~rDq~~~ 132 (254)
T COG4105 106 -----------------------------NADYAYYLKGLSYFFQ------------------------IDDVTRDQSAA 132 (254)
T ss_pred -----------------------------ChhHHHHHHHHHHhcc------------------------CCccccCHHHH
Confidence 2334555555552211 01111122234
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 835 KAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 835 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
.+|+..|+..++..|+...+-..... +..+... ...--+..|..|.+.|.+..|+..++.+++..|+
T Consensus 133 ~~A~~~f~~~i~ryPnS~Ya~dA~~~-------i~~~~d~------LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~ 199 (254)
T COG4105 133 RAAFAAFKELVQRYPNSRYAPDAKAR-------IVKLNDA------LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD 199 (254)
T ss_pred HHHHHHHHHHHHHCCCCcchhhHHHH-------HHHHHHH------HHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc
Confidence 56788888999999985433221111 1111111 1222345788999999999999999999999887
Q ss_pred h----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHH
Q 002100 915 L----QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLEL 954 (967)
Q Consensus 915 ~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l 954 (967)
. +++..+..+|..+|-.++|...-+-.-.-.|++++...-
T Consensus 200 t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~~~~~~ 243 (254)
T COG4105 200 TSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQWYKDA 243 (254)
T ss_pred ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCcchhhh
Confidence 2 489999999999999999987654444444766655443
No 193
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.40 E-value=4.8e-06 Score=77.40 Aligned_cols=112 Identities=16% Similarity=0.057 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCH
Q 002100 819 RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKE 898 (967)
Q Consensus 819 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~ 898 (967)
..++.-|...+..|+|++|++.|+.+....|. .|-...+.+.++.+|++.+++
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~---------------------------g~ya~qAqL~l~yayy~~~~y 63 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPF---------------------------GEYAEQAQLDLAYAYYKQGDY 63 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---------------------------CcccHHHHHHHHHHHHHccCH
Confidence 35556666666666666666666666666653 233345666777777777777
Q ss_pred HHHHHHHHHHHhcCCCh----HHHHHHHHHHHHcCC---------------hHHHHHHHHHHHhcCCCchhHHHHHHH
Q 002100 899 AEAIAELSRAIAFKPDL----QLLHLRAAFHDSMGD---------------HLHTQRDCEAALCLDPNHTDTLELYDK 957 (967)
Q Consensus 899 ~eAi~~~~kal~~~p~~----~~~~~~a~~~~~~g~---------------~~~A~~~~~~al~~~P~~~~~l~l~~r 957 (967)
++|+..+++.|+++|.. -+++.+|.++..+.+ ..+|..+|++.+...|+++-+.+...|
T Consensus 64 ~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~~R 141 (142)
T PF13512_consen 64 EEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADARKR 141 (142)
T ss_pred HHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence 77777777777777773 277777777777766 789999999999999999988776655
No 194
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.0038 Score=68.34 Aligned_cols=137 Identities=14% Similarity=0.128 Sum_probs=80.4
Q ss_pred hHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH-H----HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHH
Q 002100 785 KGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT-R----AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS 859 (967)
Q Consensus 785 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~-~----a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 859 (967)
.+.....+|..-...+.++.|...|..|.+.-+. + +..++|.+|...++-+.-.+.++.. .|.+...+...
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq- 441 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQ- 441 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHH-
Confidence 3456777888888889999999999999984433 2 5667999999988765544443322 23210000000
Q ss_pred ccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-------HHHHHHHHHHHcCChH
Q 002100 860 EYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ-------LLHLRAAFHDSMGDHL 932 (967)
Q Consensus 860 ~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~-------~~~~~a~~~~~~g~~~ 932 (967)
+ ....+++-.|...+.++++.||...+.+.++.....+ .+..++.+....||..
T Consensus 442 --------------~-----l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~ 502 (629)
T KOG2300|consen 442 --------------R-----LEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTV 502 (629)
T ss_pred --------------H-----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 0 0012344455555666666666666666665542211 3445566666666666
Q ss_pred HHHHHHHHHHhc
Q 002100 933 HTQRDCEAALCL 944 (967)
Q Consensus 933 ~A~~~~~~al~~ 944 (967)
++....+-++.+
T Consensus 503 es~nmvrpamql 514 (629)
T KOG2300|consen 503 ESRNMVRPAMQL 514 (629)
T ss_pred HHHhccchHHHH
Confidence 666665555544
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.38 E-value=4.2e-06 Score=88.44 Aligned_cols=100 Identities=12% Similarity=0.145 Sum_probs=68.8
Q ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 679 LLRFRQSLLL-LRLNSQKAAMRSLRLARNYSTSE---HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 679 ~~~~~~g~~~-~~~g~~~~A~~~l~~al~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
...+..+..+ +..|+|++|+..|+..++..|+. +.+++.+|.+|+..|++++|+..|+++++..|+..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~-------- 214 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP-------- 214 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc--------
Confidence 4455555544 45677777777777777777776 46777777777777777777777777777777433
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI 815 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~ 815 (967)
...++++.+|.++...|++++|+..|+++++.
T Consensus 215 -----------------------------~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 215 -----------------------------KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred -----------------------------chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33466667777777777777777777666663
No 196
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.37 E-value=0.002 Score=68.54 Aligned_cols=282 Identities=15% Similarity=0.082 Sum_probs=207.0
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHh----CchhHHHHHHHHHHhcCChHHHHHHHHHHHhccC----cchhHHHHHhhcC
Q 002100 462 QLGVVMLEREEYKDAQNWFKAAVEA----GHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYT----PVGWMYQERSLYC 533 (967)
Q Consensus 462 ~lG~~~~~~g~y~~A~~~f~~al~~----~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~----~~g~~~~~~~~y~ 533 (967)
.-|.+....||-..|.+.-.++-++ .+...+..-++.....|+++.|.+.|+..+..-. .+--.|.+-...+
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~G 168 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLG 168 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcc
Confidence 3566777788999999888887755 2244444556777888999999999998877321 1223444444455
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C-hh-----H--HHHHHHHHHHhcCHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S-PD-----C--LELRAWISIALEDYDG 604 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~-~~-----~--~~~la~~~~~~g~~~~ 604 (967)
+.+.|..+-+.+-+..|...+++...=......|+|+.|++..+......- . .. + +...+.. .-.-+...
T Consensus 169 areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s-~ldadp~~ 247 (531)
T COG3898 169 AREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS-LLDADPAS 247 (531)
T ss_pred cHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH-HhcCChHH
Confidence 779999999999999999999988888888999999999999987655433 1 11 1 1222222 22346888
Q ss_pred HHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHH
Q 002100 605 ALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQ 684 (967)
Q Consensus 605 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~ 684 (967)
|..+-.+++++.|+...+- ..-+..+...++..++ -..++.+-+.+|.- .+
T Consensus 248 Ar~~A~~a~KL~pdlvPaa------v~AAralf~d~~~rKg------------------~~ilE~aWK~ePHP-----~i 298 (531)
T COG3898 248 ARDDALEANKLAPDLVPAA------VVAARALFRDGNLRKG------------------SKILETAWKAEPHP-----DI 298 (531)
T ss_pred HHHHHHHHhhcCCccchHH------HHHHHHHHhccchhhh------------------hhHHHHHHhcCCCh-----HH
Confidence 9999999999999987776 5556777777777777 67778888888762 23
Q ss_pred HHHHHHhcCHHHHHHHHHHH---HhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCC
Q 002100 685 SLLLLRLNSQKAAMRSLRLA---RNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLN 761 (967)
Q Consensus 685 g~~~~~~g~~~~A~~~l~~a---l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~ 761 (967)
+.+|.+..--+.++.-++++ ..+.|++.+.....+..-+.-|++..|....+.+....|.-
T Consensus 299 a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre---------------- 362 (531)
T COG3898 299 ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE---------------- 362 (531)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh----------------
Confidence 44555555555555555544 45789999999999999999999999999999999888843
Q ss_pred CCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc-ccHHHHHHHHHHHhc
Q 002100 762 PESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC-EKLDLAADCYMNALN 814 (967)
Q Consensus 762 ~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~-g~~~~A~~~~~~Al~ 814 (967)
.+|..++.+-... |+-.++..++-++++
T Consensus 363 -------------------------s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 363 -------------------------SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred -------------------------hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 3666777776655 888899999999988
No 197
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.37 E-value=6.1e-05 Score=91.11 Aligned_cols=231 Identities=13% Similarity=0.051 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-ccchHHHHHHHHHhhhcCCCCCchHHHHHHH
Q 002100 694 QKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISI-QRSFEAFFLKAYALADSSLNPESSAYVIQLL 772 (967)
Q Consensus 694 ~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~~~~la~~~~~~~~~~~a~~~l 772 (967)
-.+....|++.+.-+|+..-.|..+-.-..+.++.++|.+.+++|+.. ++.-+..-+
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKL---------------------- 1497 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKL---------------------- 1497 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHH----------------------
Confidence 344566888999999999999998888889999999999999999943 332110000
Q ss_pred HHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCC
Q 002100 773 EEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR-AHQGLARVYHLKNQRKAAYDEMTKLIEKARNN 851 (967)
Q Consensus 773 e~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~-a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 851 (967)
...-+|.|+-..| |.-+.-.+.|++|.+...+. .|..|..+|...+++++|.+.|+..++...+.
T Consensus 1498 -----------NiWiA~lNlEn~y---G~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~ 1563 (1710)
T KOG1070|consen 1498 -----------NIWIAYLNLENAY---GTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT 1563 (1710)
T ss_pred -----------HHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch
Confidence 1112444444443 55667778999999965555 99999999999999999999999999999988
Q ss_pred HHHHHHHHcc----CChHHHHHHHHHhhccCCC--CchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHH
Q 002100 852 ASAYEKRSEY----CDRDMAKSDLSMATQLDPM--RTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAF 924 (967)
Q Consensus 852 ~~~~~~~~~~----~~~~~A~~~l~~al~l~p~--~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~ 924 (967)
...|...+.. .+-+.|...+.+|++.-|. +.......|.+-++.|+.+.+...|+-.+.-.|. .+.|.-+...
T Consensus 1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDM 1643 (1710)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHH
Confidence 8888888843 5567888999999999998 7788888999999999999999999999999999 6788888999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 002100 925 HDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATE 960 (967)
Q Consensus 925 ~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~ 960 (967)
-.+.|+.+-+...|++++++.=.-..+..++++-.+
T Consensus 1644 eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1644 EIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred HHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 999999999999999999988776677777766544
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.35 E-value=1.8e-06 Score=72.41 Aligned_cols=70 Identities=27% Similarity=0.329 Sum_probs=63.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 002100 889 AAVLMDDHKEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKA 958 (967)
Q Consensus 889 a~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~ 958 (967)
..+|...+++++|++.++++++.+|+. ..+..+|.++..+|++++|+.+++++++..|++++...+..++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 568899999999999999999999994 5888899999999999999999999999999999888777654
No 199
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.31 E-value=0.0012 Score=77.36 Aligned_cols=227 Identities=14% Similarity=0.042 Sum_probs=115.7
Q ss_pred hcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchh
Q 002100 565 EENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWS 643 (967)
Q Consensus 565 ~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~ 643 (967)
..+++.+|+....+.++..| .+.+..+.|....++|.+++|...++..-...+++...
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~t--------------------- 79 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLT--------------------- 79 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHH---------------------
Confidence 34556666666666666666 45555666666666666666664444444444443333
Q ss_pred hHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 002100 644 QADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILY 723 (967)
Q Consensus 644 ~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~ 723 (967)
.-.+..+|.+++++++|...|++++..+|+ -+.++.+-.+|.
T Consensus 80 -------------------------------------Lq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayv 121 (932)
T KOG2053|consen 80 -------------------------------------LQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYV 121 (932)
T ss_pred -------------------------------------HHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHH
Confidence 333344444455555555555555555555 444444444444
Q ss_pred HcCChHHHHHHHHHHHhcccchHHHHHHHHHhh---hcCCCCCc----hHHHHHHHHHHhcCCCCCCchHHHHHHhHHHH
Q 002100 724 DTGHREEALAKAEESISIQRSFEAFFLKAYALA---DSSLNPES----SAYVIQLLEEALRCPSDGLRKGQALNNLGSVY 796 (967)
Q Consensus 724 ~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la---~~~~~~~~----~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~ 796 (967)
+.+.|.+-.+..-+..+..|+.+-+|.....+- ....+... ..-+....+..++....-...++.. ..-.+.
T Consensus 122 R~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL 200 (932)
T KOG2053|consen 122 REKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII-LYLLIL 200 (932)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH-HHHHHH
Confidence 444444433333333334444443443332111 11111100 1112222333333331111112222 223566
Q ss_pred HhcccHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCC
Q 002100 797 VDCEKLDLAADCYMNALN----IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNN 851 (967)
Q Consensus 797 ~~~g~~~~A~~~~~~Al~----~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 851 (967)
..++++++|.+.+..-+. ..+...-..-...+...++|.+-.+...++++.++++
T Consensus 201 ~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 788999999999955443 2222233345667888999999999999999999987
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.27 E-value=2.2e-06 Score=70.63 Aligned_cols=67 Identities=24% Similarity=0.225 Sum_probs=57.5
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 002100 892 LMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKA 958 (967)
Q Consensus 892 ~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~ 958 (967)
+++.|++++|+..|+++++.+|+ .++++.+|.+|.+.|++++|...+++++..+|+++.+..++.++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 35678999999999999999998 45888899999999999999999999999999998888877664
No 201
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.27 E-value=6.3e-06 Score=73.53 Aligned_cols=88 Identities=28% Similarity=0.299 Sum_probs=76.5
Q ss_pred ccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHcCChHHH
Q 002100 860 EYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-----LQLLHLRAAFHDSMGDHLHT 934 (967)
Q Consensus 860 ~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-----~~~~~~~a~~~~~~g~~~~A 934 (967)
+.++.+.|++.|.+++.+.|.++.+|.++|..+.-+|+.++|+..+++++++..+ .+++..+|.+|..+|+-+.|
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 4478888888888888888899999999999999999999999999999998755 24888999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 002100 935 QRDCEAALCLDPN 947 (967)
Q Consensus 935 ~~~~~~al~~~P~ 947 (967)
..+|+.|-++...
T Consensus 135 R~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 135 RADFEAAAQLGSK 147 (175)
T ss_pred HHhHHHHHHhCCH
Confidence 9999998877654
No 202
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.27 E-value=1.6e-05 Score=81.70 Aligned_cols=112 Identities=12% Similarity=0.022 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHH
Q 002100 821 HQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAE 900 (967)
Q Consensus 821 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e 900 (967)
.++.|.-+++.|+|..|...|..-++..|+ .+-.+.+++.||.+++.+|+|++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~---------------------------s~~~~nA~yWLGe~~y~qg~y~~ 196 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN---------------------------STYTPNAYYWLGESLYAQGDYED 196 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------------------CcccchhHHHHHHHHHhcccchH
Confidence 667777888889999999999998888886 34557889999999999999999
Q ss_pred HHHHHHHHHhcCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 002100 901 AIAELSRAIAFKPD----LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 901 Ai~~~~kal~~~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~ 959 (967)
|...|..+++-.|+ +++++.+|.+...+|+.++|...|+++++.+|+.+.+.....++.
T Consensus 197 Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~~ 259 (262)
T COG1729 197 AAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVALK 259 (262)
T ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 99999999999888 579999999999999999999999999999999988766555553
No 203
>PRK15331 chaperone protein SicA; Provisional
Probab=98.27 E-value=1.8e-05 Score=75.28 Aligned_cols=107 Identities=16% Similarity=0.034 Sum_probs=86.7
Q ss_pred HhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhcc
Q 002100 579 IIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSS 657 (967)
Q Consensus 579 al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~ 657 (967)
+..+.+ ..+..+..|.-+++.|++++|...|+-+...+|.++..+ .-++.++...++|++|
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~------~GLaa~~Q~~k~y~~A------------ 90 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYT------MGLAAVCQLKKQFQKA------------ 90 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH------HHHHHHHHHHHHHHHH------------
Confidence 344444 566778888888888888888888888888888887777 6677888888888888
Q ss_pred ccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 002100 658 VDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS 710 (967)
Q Consensus 658 ~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~ 710 (967)
+..|..+..++++++...+..|.+++.+|+...|+.+|+.++. .|.
T Consensus 91 ------i~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 91 ------CDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTE 136 (165)
T ss_pred ------HHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccc
Confidence 7888888888888888888999999999999999999999988 344
No 204
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.26 E-value=8e-05 Score=75.88 Aligned_cols=179 Identities=14% Similarity=0.035 Sum_probs=137.2
Q ss_pred chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC----ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhh
Q 002100 553 SYPYKYRAILLVEENKLAAAITEINRIIGFKV----SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHG 628 (967)
Q Consensus 553 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~ 628 (967)
+.-++..|...++.|+|++|+..|+.+....| ...+...++..++..++|++|+...++-+.+.|.++.+-...
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~-- 111 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY-- 111 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH--
Confidence 45688899999999999999999999999888 467999999999999999999999999999999988765322
Q ss_pred hhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHH-----------------HHHHHHHHHHh
Q 002100 629 DNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLL-----------------RFRQSLLLLRL 691 (967)
Q Consensus 629 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~-----------------~~~~g~~~~~~ 691 (967)
++.++.+...-+...-| .+ -...|+..+...+...|+..-. -...|..|.+.
T Consensus 112 -YlkgLs~~~~i~~~~rD--------q~--~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr 180 (254)
T COG4105 112 -YLKGLSYFFQIDDVTRD--------QS--AARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKR 180 (254)
T ss_pred -HHHHHHHhccCCccccC--------HH--HHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666644321111000 00 0023578888889988875321 12568889999
Q ss_pred cCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccc
Q 002100 692 NSQKAAMRSLRLARNYSTSE---HEKLVYEGWILYDTGHREEALAKAEESISIQRS 744 (967)
Q Consensus 692 g~~~~A~~~l~~al~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 744 (967)
|.+..|+.-++.+++..|+. .+++..+..+|+.+|-.++|...-.-.-...|+
T Consensus 181 ~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 181 GAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred cChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 99999999999999987764 468889999999999999988765544333443
No 205
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.25 E-value=0.0067 Score=73.25 Aligned_cols=433 Identities=19% Similarity=0.192 Sum_probs=231.8
Q ss_pred HHhhhchHHHHHHHHHHHHHh-hcCChHHHHHHHHHHHHhC--c------hhHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 002100 448 ESATESWQKQLAFHQLGVVML-EREEYKDAQNWFKAAVEAG--H------IYSLVGVARTKFKRGHKYSAYKLMNSLISD 518 (967)
Q Consensus 448 ~~~~~~~~~a~a~~~lG~~~~-~~g~y~~A~~~f~~al~~~--~------~~a~~~la~~~~~~g~~~~A~~~l~~~i~~ 518 (967)
+....+.+.+.+++++|.+++ +..++++|+.++++++.+. + .....-+++++.+.+... |...+++.++.
T Consensus 50 ~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~ 128 (608)
T PF10345_consen 50 QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIED 128 (608)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHH
Confidence 344456788999999999999 6789999999999998884 2 223445677777777666 77777776664
Q ss_pred cCc---chhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC---Ch----hH
Q 002100 519 YTP---VGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV---SP----DC 588 (967)
Q Consensus 519 ~~~---~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~----~~ 588 (967)
+.. ..|.+.-+ +.+...+...+++..|++.++....... ++ -+
T Consensus 129 ~~~~~~~~w~~~fr---------------------------ll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 129 SETYGHSAWYYAFR---------------------------LLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HhccCchhHHHHHH---------------------------HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 433 11111110 1112233333788888888887776542 22 24
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCchHHhhhhhhhhhHhh--hHHHhhchhhHhhHHHHHhh------
Q 002100 589 LELRAWISIALEDYDGALRDVRALLTL------DPSYMMFYGQLHGDNLVET--LQPLVQQWSQADCWMQLYDR------ 654 (967)
Q Consensus 589 ~~~la~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~~~~~~~~~~--l~~~~~~~~~A~~~~~l~~~------ 654 (967)
....+.+....+..+++++..+++... +|+..... +....++-. .....+++..+...++..+.
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~q--L~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~ 259 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQ--LKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIK 259 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence 444566777777777788777776443 22221111 001122222 22333343344322221110
Q ss_pred ----hccccccchHHHHH-----------HHHhcCCC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------
Q 002100 655 ----WSSVDDIGSLAVVH-----------HMLANDPG---KSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS------ 710 (967)
Q Consensus 655 ----~~~~d~~~al~~~~-----------~~l~~~p~---~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~------ 710 (967)
|...++++.+..-. -.+.--|. ....|+.-|......+..+.|.+.++++++.-.+
T Consensus 260 ~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~ 339 (608)
T PF10345_consen 260 KSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSP 339 (608)
T ss_pred cCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCC
Confidence 22222222221100 00000000 0123444566666667666777777766542111
Q ss_pred -h-------------------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHH
Q 002100 711 -E-------------------HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQ 770 (967)
Q Consensus 711 -~-------------------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~ 770 (967)
. ...+++.+++..-.+++..|....+.+.......+..
T Consensus 340 ~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~---------------------- 397 (608)
T PF10345_consen 340 SAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSK---------------------- 397 (608)
T ss_pred CCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccc----------------------
Confidence 0 0123455666666777777777776655433211100
Q ss_pred HHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHH--------HHhccCcHH-----HHHHHHHHHHHhCCHHHH
Q 002100 771 LLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYM--------NALNIKHTR-----AHQGLARVYHLKNQRKAA 837 (967)
Q Consensus 771 ~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~--------~Al~~~~~~-----a~~~la~~~~~~g~~~~A 837 (967)
.........++..|..+...|+.+.|+..|. .+...+... +..++..++...+.....
T Consensus 398 ---------~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~ 468 (608)
T PF10345_consen 398 ---------LYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDS 468 (608)
T ss_pred ---------hhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchh
Confidence 0011234678888999999999999999998 333333322 666777777766654442
Q ss_pred HHHHHHHHH-Hcc---CCHHHHHHHH------cc-----CChHHHHHHHHHhhccC-------CCCchHHHHHHHHHHhC
Q 002100 838 YDEMTKLIE-KAR---NNASAYEKRS------EY-----CDRDMAKSDLSMATQLD-------PMRTYPYRYRAAVLMDD 895 (967)
Q Consensus 838 ~~~~~~al~-~~p---~~~~~~~~~~------~~-----~~~~~A~~~l~~al~l~-------p~~~~~~~~la~~~~~~ 895 (967)
...+..+++ +.| +....++..+ .+ -...++...+..+++.. --...++..++..++ .
T Consensus 469 ~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~ 547 (608)
T PF10345_consen 469 ESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-E 547 (608)
T ss_pred hhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-c
Confidence 222333333 222 1111111111 01 22346666666655543 111234556777777 7
Q ss_pred CCHHHHHHHHHHHHhcC---CChH--HH-----HHHHHHHHHcCChHHHHHHHHHHH
Q 002100 896 HKEAEAIAELSRAIAFK---PDLQ--LL-----HLRAAFHDSMGDHLHTQRDCEAAL 942 (967)
Q Consensus 896 g~~~eAi~~~~kal~~~---p~~~--~~-----~~~a~~~~~~g~~~~A~~~~~~al 942 (967)
|+..+......++.... |+.. .| ..++..+...|+.++|....++.-
T Consensus 548 ~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 548 GDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 88888777766666543 3312 33 235667889999999988877654
No 206
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.25 E-value=0.00038 Score=75.76 Aligned_cols=464 Identities=14% Similarity=0.093 Sum_probs=249.7
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHh-Cch-----hHH-HHHHHHHHhcCChHHHHHHHHHHHh---c--cCcc
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEA-GHI-----YSL-VGVARTKFKRGHKYSAYKLMNSLIS---D--YTPV 522 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~-~~~-----~a~-~~la~~~~~~g~~~~A~~~l~~~i~---~--~~~~ 522 (967)
+....+|+.|.+++...+|-+|++.-...+.. .+. .+. ...-.++....+.++|+.++.-+.+ . -...
T Consensus 98 ~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~ 177 (696)
T KOG2471|consen 98 QGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLV 177 (696)
T ss_pred cchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 34677889999999999999999877666554 221 011 1111222333344445444332221 0 0001
Q ss_pred hhHHHHHhhc--CChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHh
Q 002100 523 GWMYQERSLY--CSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIAL 599 (967)
Q Consensus 523 g~~~~~~~~y--~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~ 599 (967)
|..--..... .....|...+- -.+|. ..+..+.-..|....+...+....+.+..+.. ++.++.+.++.++..
T Consensus 178 gn~~~~nn~~kt~s~~aAe~s~~---~a~~k-~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~ 253 (696)
T KOG2471|consen 178 GNHIPANNLLKTLSPSAAERSFS---TADLK-LELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAH 253 (696)
T ss_pred ccccchhhhcccCCcchhcccch---hhccc-hhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHh
Confidence 1000000000 00011111110 01111 12223334455677788888888888887777 789999999999999
Q ss_pred cCHHHHHHHHHHH-HHhCCCchHHh--hhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHh----
Q 002100 600 EDYDGALRDVRAL-LTLDPSYMMFY--GQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLA---- 672 (967)
Q Consensus 600 g~~~~A~~~~~~a-l~l~p~~~~~~--~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~---- 672 (967)
|++.+|.+.+... +...|...... .+-....++|-+..+++.|.-+ ...|.++++
T Consensus 254 gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~------------------~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 254 GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQAS------------------SVLFLKALRNSCS 315 (696)
T ss_pred cchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHH------------------HHHHHHHHHHHHH
Confidence 9999999876543 22233311110 0000125678888888888777 555665553
Q ss_pred ---c--CC---------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHc---CChHHH----
Q 002100 673 ---N--DP---------GKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDT---GHREEA---- 731 (967)
Q Consensus 673 ---~--~p---------~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~---g~~~eA---- 731 (967)
. .| ..-.+.|+.|..|+..|++..|.++|.++....-.+|..|..++.+.... |-.++-
T Consensus 316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~ 395 (696)
T KOG2471|consen 316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSL 395 (696)
T ss_pred HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCc
Confidence 1 12 23467889999999999999999999999999999999999999876532 111111
Q ss_pred ------------------------------------------HHHHHHHHhcccchHHHHHHHHHhhhcC----CCCC--
Q 002100 732 ------------------------------------------LAKAEESISIQRSFEAFFLKAYALADSS----LNPE-- 763 (967)
Q Consensus 732 ------------------------------------------~~~~~~al~~~p~~~~~~~~~~~la~~~----~~~~-- 763 (967)
.-++..++-+-|+.. .+.+....+... ..++
T Consensus 396 s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q-~~~~~~~~a~ns~~~g~~~e~~ 474 (696)
T KOG2471|consen 396 SRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQ-DLGSILSVAMNSTKEGSSSEHE 474 (696)
T ss_pred ccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhh-cchhhhhhhccccccCCCCcCC
Confidence 111111111111000 000000000000 0000
Q ss_pred ---------------------chHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc-CcHHHH
Q 002100 764 ---------------------SSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI-KHTRAH 821 (967)
Q Consensus 764 ---------------------~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~-~~~~a~ 821 (967)
.+..+.+-++. .....+.+.+.+-...|+.-.|+..-++.+.. +-..++
T Consensus 475 e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leN---------m~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~lS~~~ 545 (696)
T KOG2471|consen 475 EGNTTTDSKEHKGDMSQEIPQSSPSAFEDLEN---------MRQAIFANMAYVELELGDPIKALSAATKLLQLADLSKIY 545 (696)
T ss_pred CCCCCcchhcCCCCCCccCCCCCcchHHHHHH---------HHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhhhhhHH
Confidence 00011111111 11235566777888999999999999999883 333455
Q ss_pred HHHHHHH-----HHhCCHHHHHHHHHHHHHHccCCHHHHHHHH--c-cCChHHHHHHH-HHhhccC-----CCCchHHHH
Q 002100 822 QGLARVY-----HLKNQRKAAYDEMTKLIEKARNNASAYEKRS--E-YCDRDMAKSDL-SMATQLD-----PMRTYPYRY 887 (967)
Q Consensus 822 ~~la~~~-----~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~--~-~~~~~~A~~~l-~~al~l~-----p~~~~~~~~ 887 (967)
.-||.+| ..+++..+|...+...+--+.+....|+... . .+.. ++++-- .+.-+.. ......+++
T Consensus 546 kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~-e~l~~s~~r~~q~~~~sv~~Ar~v~~~n 624 (696)
T KOG2471|consen 546 KFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHT-ETLDPSTGRTRQSVFLSVEEARGVLFAN 624 (696)
T ss_pred HHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccc-cccCCcCCCCcccccCCHHHHhHHHHHH
Confidence 5555544 4555555555554331111101000011000 0 0000 000000 0000111 112345778
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCchhH
Q 002100 888 RAAVLMDDHKEAEAIAELSRAIAFKPD---LQLLHLRAAFHDSMGDHLHTQRDCEAALCL--DPNHTDT 951 (967)
Q Consensus 888 la~~~~~~g~~~eAi~~~~kal~~~p~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~~ 951 (967)
+|.+|.-+|++++|...+.+|..+-+. +++....-.+-..+|+...|+..+++.--+ -|.+.++
T Consensus 625 La~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~~~~v~~~~ev 693 (696)
T KOG2471|consen 625 LAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTHVSFVPGRLEV 693 (696)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcccccccCcchhh
Confidence 999999999999999999999988774 456666677778999999999999887433 2554443
No 207
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.22 E-value=2.4e-05 Score=71.70 Aligned_cols=97 Identities=20% Similarity=0.142 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHh
Q 002100 713 EKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNL 792 (967)
Q Consensus 713 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~l 792 (967)
.+++.+|+++-..|+.++|+..|++++....+.. ....++..+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~-------------------------------------~~~~a~i~l 44 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA-------------------------------------DRRRALIQL 44 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-------------------------------------HHHHHHHHH
Confidence 4567777777777777777777777776544222 222566777
Q ss_pred HHHHHhcccHHHHHHHHHHHhcc--C---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002100 793 GSVYVDCEKLDLAADCYMNALNI--K---HTRAHQGLARVYHLKNQRKAAYDEMTKLIE 846 (967)
Q Consensus 793 g~~~~~~g~~~~A~~~~~~Al~~--~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 846 (967)
|..+...|++++|+..+++++.. + +......+|.++...|++++|+..+-.++.
T Consensus 45 astlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 45 ASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777777777763 2 223555677777777777777777766554
No 208
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.19 E-value=2.8e-05 Score=71.34 Aligned_cols=100 Identities=19% Similarity=0.087 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHh
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE---HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYAL 755 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~l 755 (967)
.+.|.++.++-..|+.++|+..|++++...... ..++..+|..+..+|++++|+..+++++...|+.+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~--------- 72 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE--------- 72 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---------
Confidence 467899999999999999999999999975443 57899999999999999999999999998877532
Q ss_pred hhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc
Q 002100 756 ADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI 815 (967)
Q Consensus 756 a~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~ 815 (967)
........++.++...|++++|+..+-.++..
T Consensus 73 ----------------------------~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 73 ----------------------------LNAALRVFLALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred ----------------------------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 12245556778889999999999999877753
No 209
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.18 E-value=3e-05 Score=69.33 Aligned_cols=107 Identities=16% Similarity=0.086 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCC
Q 002100 681 RFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSL 760 (967)
Q Consensus 681 ~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~ 760 (967)
+-..|..+...|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|+..+++++++.....
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t-------------- 111 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT-------------- 111 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc--------------
Confidence 345688888999999999999999999999999999999999999999999999999998765221
Q ss_pred CCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHH
Q 002100 761 NPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQG 823 (967)
Q Consensus 761 ~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~ 823 (967)
....+++...|.+|..+|+.+.|...|+.|-+++...+...
T Consensus 112 ----------------------rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~Q 152 (175)
T KOG4555|consen 112 ----------------------RTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQ 152 (175)
T ss_pred ----------------------hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHH
Confidence 12337899999999999999999999999998887654433
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.17 E-value=7.1e-06 Score=68.71 Aligned_cols=64 Identities=20% Similarity=0.296 Sum_probs=54.5
Q ss_pred HHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 560 AILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 560 a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
..+|...++|++|++.+++++..+| ++..+..+|.++..+|++++|+..++++++.+|++....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4677888888888888888888888 888888888888888888888888888888888877665
No 211
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.14 E-value=4.9e-06 Score=68.56 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=41.1
Q ss_pred HhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 564 VEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 564 ~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
+..|++++|++.|++++..+| +.++++.+|.+|...|++++|...+++++..+|+++..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 456677777777777777777 677777777777777777777777777777777765444
No 212
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.13 E-value=3.4e-05 Score=85.74 Aligned_cols=76 Identities=22% Similarity=0.172 Sum_probs=64.5
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
+..+++++..+|.+..++..++..++..++++.|+...+++++..|++.+.|+.|+.+|...|++++|+..+...-
T Consensus 220 I~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 220 IRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5666666666666677777788889999999999999999999999999999999999999999999998777443
No 213
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.11 E-value=1.6e-06 Score=86.22 Aligned_cols=110 Identities=22% Similarity=0.220 Sum_probs=68.2
Q ss_pred eEEEehhHHHhccCHHHHHhhcCCCCCCc---------cceEEeccCCCCHHHH-HHHHHhHcCCCCCCCCH-----HHH
Q 002100 265 DEIRCVRYKIASLSRPFRTMLYGGFIESR---------REKVNFSQNGISVEAM-RAAEEFSRTKMLDSFDP-----RLV 329 (967)
Q Consensus 265 ~~~~~hr~vLa~~S~~F~~~~~~~~~e~~---------~~~i~~~~~~~~~~~~-~~~l~~~Yt~~~~~~~~-----~~~ 329 (967)
++|+|||.|.|+||++||.++....+|.. ...|.+++ -|=|..| -.+++++||++++ .+. +.|
T Consensus 261 eeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE-~I~PkafA~i~lhclYTD~lD-lSl~hkce~Si 338 (401)
T KOG2838|consen 261 EEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDE-LIFPKAFAPIFLHCLYTDRLD-LSLAHKCEDSI 338 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechh-hhcchhhhhhhhhhheecccc-hhhcccCCccc
Confidence 36999999999999999999986554432 23677765 4555555 4678999999994 221 111
Q ss_pred HHHHHHhchhChHHHHHHHHHHHH-----hhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhh
Q 002100 330 LELLSFANRFCCEELKSACDSYLA-----SMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPC 391 (967)
Q Consensus 330 ~~ll~~A~~~~~~~l~~~c~~~l~-----~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~ 391 (967)
-.|-++ +.|. ..+. ...++.++++|..+....|...|..+|.++...
T Consensus 339 gSLSea--------------kAitnaGkpn~~q-aaeAleL~~IAlFfEfemLaQa~e~Vir~acaa 390 (401)
T KOG2838|consen 339 GSLSEA--------------KAITNAGKPNDLQ-AAEALELIEIALFFEFEMLAQACEDVIRKACAA 390 (401)
T ss_pred ccHHHH--------------HHHHcCCCCchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 111000 0011 0011 345667777777777777777777777766653
No 214
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.11 E-value=4.6e-05 Score=84.71 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=65.5
Q ss_pred HHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhh
Q 002100 796 YVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMAT 875 (967)
Q Consensus 796 ~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al 875 (967)
....++++.|++.|++..+.+| .+...+|+++...++..+|++.+.+++...|
T Consensus 179 l~~t~~~~~ai~lle~L~~~~p-ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-------------------------- 231 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERDP-EVAVLLARVYLLMNEEVEAIRLLNEALKENP-------------------------- 231 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcCC-cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--------------------------
Confidence 3344556666666666555543 2444466666666666666655555555555
Q ss_pred ccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 876 QLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAA 941 (967)
Q Consensus 876 ~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~a 941 (967)
.+...+...|..++..++++.|++..+++.+..|+ ...|+.++.+|..+|++++|+..++.+
T Consensus 232 ----~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 232 ----QDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred ----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 44555555555566666666666666666666665 345666666666666666665555433
No 215
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.09 E-value=4.2e-05 Score=71.22 Aligned_cols=118 Identities=11% Similarity=0.047 Sum_probs=89.2
Q ss_pred chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC----ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhh
Q 002100 553 SYPYKYRAILLVEENKLAAAITEINRIIGFKV----SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHG 628 (967)
Q Consensus 553 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~ 628 (967)
+..++..|...+..|+|++|++.|+.+....| ...+...++.+|+..++|++|+..+++-++++|.++.+-...
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~-- 87 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY-- 87 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH--
Confidence 45688899999999999999999999999988 478999999999999999999999999999999998766432
Q ss_pred hhhHhhhHHHhhchhhHhhHHHHHhhhcccc---ccchHHHHHHHHhcCCCChH
Q 002100 629 DNLVETLQPLVQQWSQADCWMQLYDRWSSVD---DIGSLAVVHHMLANDPGKSL 679 (967)
Q Consensus 629 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d---~~~al~~~~~~l~~~p~~~~ 679 (967)
+.+|+.+.....-. +..++ ...-| ...|+..|.+.+...|+...
T Consensus 88 -Y~~gL~~~~~~~~~----~~~~~--~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 88 -YMRGLSYYEQDEGS----LQSFF--RSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred -HHHHHHHHHHhhhH----Hhhhc--ccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 77777777643300 00011 00000 12357788888888887544
No 216
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.07 E-value=5.3e-05 Score=77.98 Aligned_cols=106 Identities=17% Similarity=0.085 Sum_probs=77.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHH
Q 002100 715 LVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGS 794 (967)
Q Consensus 715 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~ 794 (967)
.|..|.-++..|+|.+|...|..-++..|+.. ....++++||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~-------------------------------------~~~nA~yWLGe 186 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST-------------------------------------YTPNAYYWLGE 186 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-------------------------------------ccchhHHHHHH
Confidence 66667777777777777777777777777443 33467777788
Q ss_pred HHHhcccHHHHHHHHHHHhc--cC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHH
Q 002100 795 VYVDCEKLDLAADCYMNALN--IK---HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEK 857 (967)
Q Consensus 795 ~~~~~g~~~~A~~~~~~Al~--~~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 857 (967)
+++.+|+|+.|...|..+++ ++ -+++++.||.+...+|+.++|...|+++++..|+...+...
T Consensus 187 ~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 187 SLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 88888888888877777777 22 23578888888888888888888888888888876555433
No 217
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.03 E-value=2.9e-05 Score=78.29 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=83.8
Q ss_pred EEEEEcCeEEEehhHHHhccCHHHHHhhcCCCC--CCccceEEeccCCCCHHHHHHHHHhHcCCCCC-CCCHHHHHHHHH
Q 002100 258 MSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFI--ESRREKVNFSQNGISVEAMRAAEEFSRTKMLD-SFDPRLVLELLS 334 (967)
Q Consensus 258 v~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~--e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~-~~~~~~~~~ll~ 334 (967)
|.+-|||..|..+|.-|.-...+|++||.+.+. -..+..|-|. =||.-|..+|.||..|.+. .-+...+.+|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFID---RSpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFID---RSPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEec---CChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 567899999999999999999999999998863 3344578886 4999999999999988884 335567889999
Q ss_pred HhchhChHHHHHHHHHHHHhhCC
Q 002100 335 FANRFCCEELKSACDSYLASMVS 357 (967)
Q Consensus 335 ~A~~~~~~~l~~~c~~~l~~~~~ 357 (967)
=|.+|.++.|++.|...+.....
T Consensus 84 EA~fYlL~~Lv~~C~~~i~~~~~ 106 (230)
T KOG2716|consen 84 EAEFYLLDGLVELCQSAIARLIR 106 (230)
T ss_pred HHHHhhHHHHHHHHHHHhhhccc
Confidence 99999999999999999988865
No 218
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.01 E-value=1.8e-05 Score=87.19 Aligned_cols=68 Identities=15% Similarity=0.100 Sum_probs=56.5
Q ss_pred cCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 877 LDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ----LLHLRAAFHDSMGDHLHTQRDCEAALCL 944 (967)
Q Consensus 877 l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~----~~~~~a~~~~~~g~~~~A~~~~~~al~~ 944 (967)
.+|+++.+++++|.+|+..|+|++|+..|+++++++|++. +++++|.+|..+|++++|+.++++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678888888888888888888888888888888888843 4888888888888888888888888886
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.0037 Score=63.18 Aligned_cols=218 Identities=17% Similarity=0.171 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------------Cch-----hH-HHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYS-------------TSE-----HE-KLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~~-------------p~~-----~~-a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
.+|..+-.++.++...++|...++..-+.+ |+. |- .....|.+....|+..+.+.-+....
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~ 149 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLK 149 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 456666677778888888887666554443 221 11 12344677788899988887776654
Q ss_pred hcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH-
Q 002100 740 SIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT- 818 (967)
Q Consensus 740 ~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~- 818 (967)
..-. +....-+....++++ +++.++ +.....+.+..++.-.|+|.-.++.+.+.++.+++
T Consensus 150 ~~V~-------~ii~~~e~~~~~ESs---v~lW~K---------Rl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~ 210 (366)
T KOG2796|consen 150 TVVS-------KILANLEQGLAEESS---IRLWRK---------RLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ 210 (366)
T ss_pred HHHH-------HHHHHHHhccchhhH---HHHHHH---------HHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc
Confidence 2211 111111222222222 222222 22356777888899999999999999999996643
Q ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC------CHHHHHHHH-cc---CChHHHHHHHHHhhccCCCCchHHH
Q 002100 819 --RAHQGLARVYHLKNQRKAAYDEMTKLIEKARN------NASAYEKRS-EY---CDRDMAKSDLSMATQLDPMRTYPYR 886 (967)
Q Consensus 819 --~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~-~~---~~~~~A~~~l~~al~l~p~~~~~~~ 886 (967)
.....|+++.++-|+.+.|..+++++-+.+.. +..+..+.+ .+ +++..|...|.+++..||.++.+..
T Consensus 211 ~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~N 290 (366)
T KOG2796|consen 211 EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANN 290 (366)
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhc
Confidence 37788999999999999999999966544332 122222222 12 7889999999999999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 002100 887 YRAAVLMDDHKEAEAIAELSRAIAFKPDL 915 (967)
Q Consensus 887 ~la~~~~~~g~~~eAi~~~~kal~~~p~~ 915 (967)
+.|.+++..|+..+|++.++.+.+..|.+
T Consensus 291 nKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 291 NKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 99999999999999999999999999984
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.94 E-value=2.7e-05 Score=85.83 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=64.7
Q ss_pred hCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-Chh---HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 548 LDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPD---CLELRAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 548 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~---~~~~la~~~~~~g~~~~A~~~~~~al~l 615 (967)
.+|+++.+++++|.+|+..|+|++|+..|+++++++| +.+ +|+++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999999999 564 5999999999999999999999999998
No 221
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.93 E-value=0.00091 Score=64.04 Aligned_cols=148 Identities=15% Similarity=0.166 Sum_probs=95.7
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhc-cCC-ChhHHHHHHHHHHHhcCHHHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIG-FKV-SPDCLELRAWISIALEDYDGALRDVRA 611 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~ 611 (967)
|++.......+.++..|+.. -.+.+|..+.+.|++.+|...|++++. +.. ++..+..+++..+..+++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 45555555555555555543 244566666666666666666666653 222 555666666666666666666666666
Q ss_pred HHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 002100 612 LLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRL 691 (967)
Q Consensus 612 al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~ 691 (967)
+.+.+|... .+......|..|..+
T Consensus 150 l~e~~pa~r--------------------------------------------------------~pd~~Ll~aR~laa~ 173 (251)
T COG4700 150 LMEYNPAFR--------------------------------------------------------SPDGHLLFARTLAAQ 173 (251)
T ss_pred HhhcCCccC--------------------------------------------------------CCCchHHHHHHHHhc
Confidence 655554421 233344557777788
Q ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 692 NSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 692 g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
|.+.+|...|+.++...|. +++..+.+..+..+|+.++|...+....
T Consensus 174 g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 174 GKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred CCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 8888888888888888886 6677777888888888888877765544
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.91 E-value=3.4e-05 Score=65.51 Aligned_cols=64 Identities=28% Similarity=0.375 Sum_probs=55.4
Q ss_pred hHHHHHHhHHHHHhcccHHHHHHHHHHHhcc----C--cH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 002100 785 KGQALNNLGSVYVDCEKLDLAADCYMNALNI----K--HT---RAHQGLARVYHLKNQRKAAYDEMTKLIEKA 848 (967)
Q Consensus 785 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~----~--~~---~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 848 (967)
.+.+++++|.+|..+|++++|+++|+++++. + ++ .++.++|.++..+|++++|++.+++++++.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4578999999999999999999999999973 2 22 278999999999999999999999999864
No 223
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.0009 Score=67.48 Aligned_cols=189 Identities=13% Similarity=0.094 Sum_probs=118.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHH
Q 002100 496 ARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITE 575 (967)
Q Consensus 496 a~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~ 575 (967)
|.+....|+..+...-+..+.......-.....+. ..+..+..+++-+ ....+.+..++...|.|.-.+..
T Consensus 129 Ae~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~---~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~ 199 (366)
T KOG2796|consen 129 AELQQYLGNPQESLDRLHKLKTVVSKILANLEQGL---AEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDA 199 (366)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhcc---chhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHH
Confidence 55666677777766665555442222111111111 1133344444433 24567778899999999999999
Q ss_pred HHHHhccCC--ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHh
Q 002100 576 INRIIGFKV--SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYD 653 (967)
Q Consensus 576 ~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~ 653 (967)
+.++++.+| ++.....+|.+..+.||.+.|..+|+.+-+.+..-....+.+.-..+.+.++...++|..|
T Consensus 200 ~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a-------- 271 (366)
T KOG2796|consen 200 YHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEA-------- 271 (366)
T ss_pred HHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHH--------
Confidence 999999996 8999999999999999999999999866533211111110000013334444444455555
Q ss_pred hhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch
Q 002100 654 RWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE 711 (967)
Q Consensus 654 ~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~ 711 (967)
...+.+.++.||.++.+..+.+.+++..|+...|++.++.+++..|..
T Consensus 272 ----------~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 272 ----------HRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred ----------HHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 566666777777777777777777777777777777777777776653
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.89 E-value=1.5e-05 Score=67.79 Aligned_cols=74 Identities=24% Similarity=0.358 Sum_probs=58.6
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHH
Q 002100 709 TSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQA 788 (967)
Q Consensus 709 p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a 788 (967)
|+...++.++|.+|..+|++++|+..|++++++..... .+.+..+.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---------------------------------~~~~~~a~~ 48 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLG---------------------------------DDHPDTANT 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---------------------------------THHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC---------------------------------CCCHHHHHH
Confidence 45567899999999999999999999999996622111 111233578
Q ss_pred HHHhHHHHHhcccHHHHHHHHHHHhcc
Q 002100 789 LNNLGSVYVDCEKLDLAADCYMNALNI 815 (967)
Q Consensus 789 ~~~lg~~~~~~g~~~~A~~~~~~Al~~ 815 (967)
+.++|.++...|++++|+++|++++++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999864
No 225
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.0017 Score=64.49 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=32.4
Q ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhccCcH--------HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHcc
Q 002100 788 ALNNLGSVYVDCEKLDLAADCYMNALNIKHT--------RAHQGLARVYHLK-NQRKAAYDEMTKLIEKAR 849 (967)
Q Consensus 788 a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~--------~a~~~la~~~~~~-g~~~~A~~~~~~al~~~p 849 (967)
.|...+.+|... +..+|+.++++++++-.. ..+..+|.+|... .++++|+..|+++-+...
T Consensus 76 ~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 76 TYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred HHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence 333344444333 566666666666552111 1344566666654 667777777766665443
No 226
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.85 E-value=2e-05 Score=86.29 Aligned_cols=102 Identities=23% Similarity=0.218 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 862 CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~ 940 (967)
+.++.|+..|.+|++++|+.+..+.+++.++.+.+++..|+..+.+|++.+|.. .+|+.+|.+...++.+.+|+.+|++
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEK 97 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999995 4999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHhhhh
Q 002100 941 ALCLDPNHTDTLELYDKATERVN 963 (967)
Q Consensus 941 al~~~P~~~~~l~l~~r~~~~~~ 963 (967)
...+.|+++.+...+...+...+
T Consensus 98 ~~~l~Pnd~~~~r~~~Ec~~~vs 120 (476)
T KOG0376|consen 98 VKKLAPNDPDATRKIDECNKIVS 120 (476)
T ss_pred hhhcCcCcHHHHHHHHHHHHHHH
Confidence 99999999999887776665543
No 227
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.82 E-value=8.4e-05 Score=62.01 Aligned_cols=81 Identities=28% Similarity=0.418 Sum_probs=65.1
Q ss_pred EEEEE-cCeEEEehhHHHhccCHHHHHhhcCC--CCCCccceEEeccCCCCHHHHHHHHHhH-----cCCC---CC--CC
Q 002100 258 MSFCI-GNDEIRCVRYKIASLSRPFRTMLYGG--FIESRREKVNFSQNGISVEAMRAAEEFS-----RTKM---LD--SF 324 (967)
Q Consensus 258 v~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~~--~~e~~~~~i~~~~~~~~~~~~~~~l~~~-----Yt~~---~~--~~ 324 (967)
|+++- +|.+|-..| -+|.-|+-.|+||+|+ +.|...++|.+++ |...+++.+.+|+ ||+. ++ ++
T Consensus 19 VkLvS~Ddhefiikr-e~AmtSgTiraml~gpg~~se~~~n~v~f~d--i~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~I 95 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKR-EHAMTSGTIRAMLSGPGVFSEAEKNEVYFRD--IPSHILEKVCEYLAYKVRYTNSSTEIPEFDI 95 (112)
T ss_pred eEeecCCCcEEEEee-hhhhhhhHHHHHHcCCccccccccceEEecc--chHHHHHHHHHHhhheeeeccccccCCCCCC
Confidence 55655 455555554 5678899999999986 5566778999988 9999999999998 6665 22 78
Q ss_pred CHHHHHHHHHHhchhCh
Q 002100 325 DPRLVLELLSFANRFCC 341 (967)
Q Consensus 325 ~~~~~~~ll~~A~~~~~ 341 (967)
+++.+++||.+|+++.|
T Consensus 96 ppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 96 PPEMALELLMAANYLEC 112 (112)
T ss_pred CHHHHHHHHHHhhhhcC
Confidence 99999999999998865
No 228
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.76 E-value=0.12 Score=57.89 Aligned_cols=145 Identities=15% Similarity=0.080 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhc---cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHH--cc---CChHHHHHHHHH
Q 002100 802 LDLAADCYMNALN---IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS--EY---CDRDMAKSDLSM 873 (967)
Q Consensus 802 ~~~A~~~~~~Al~---~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~--~~---~~~~~A~~~l~~ 873 (967)
++.--..|++++. .+++-++..+-..-.+..-.+.|...|.++-+.......+|...+ +| ++..-|...|+-
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence 4444455555555 233334444444444455555666666666554433333333333 22 566666666666
Q ss_pred hhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCC--hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 002100 874 ATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAF--KPD--LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDP 946 (967)
Q Consensus 874 al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~--~p~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P 946 (967)
.++..++.+..-.....-+...++-..|...|++++.. .|+ -++|...-..-..-||...+++.-++-....|
T Consensus 427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 66666666666666666667777777777777777766 333 13555555555566777777776666666666
No 229
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.71 E-value=3.1e-05 Score=68.40 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=68.7
Q ss_pred EEEEEcCeEEEehhHHHh-ccCHHHHHhhcCC---CCCCccceEEeccCCCCHHHHHHHHHhHcC-CCCCCCCHHHHHHH
Q 002100 258 MSFCIGNDEIRCVRYKIA-SLSRPFRTMLYGG---FIESRREKVNFSQNGISVEAMRAAEEFSRT-KMLDSFDPRLVLEL 332 (967)
Q Consensus 258 v~~~v~~~~~~~hr~vLa-~~S~~F~~~~~~~---~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt-~~~~~~~~~~~~~l 332 (967)
|+|.|||+.|..-+..|. ....+|..|+.+. ........+-|. -+|..|+.||+|+.+ +.++..+...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD---Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID---RDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES---S-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec---cChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999998 5556899999875 444556677774 699999999999999 67733335678899
Q ss_pred HHHhchhChHHH-HHHH
Q 002100 333 LSFANRFCCEEL-KSAC 348 (967)
Q Consensus 333 l~~A~~~~~~~l-~~~c 348 (967)
+.-|++|+++.| ++.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999999 7776
No 230
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.003 Score=62.85 Aligned_cols=141 Identities=13% Similarity=0.058 Sum_probs=90.4
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHhccCCC-------hhHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCchHHhhhh
Q 002100 555 PYKYRAILLVEENKLAAAITEINRIIGFKVS-------PDCLELRAWISIAL-EDYDGALRDVRALLTLDPSYMMFYGQL 626 (967)
Q Consensus 555 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~la~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~~~ 626 (967)
.|..-+.+|-+ .+.++|+..+++++++..+ ...+..+|.+|..- .++++|+.+|+++-+........-...
T Consensus 76 ~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN 154 (288)
T KOG1586|consen 76 TYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN 154 (288)
T ss_pred HHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 34444444433 4777777777777776551 22455677777765 888888888888877644332211110
Q ss_pred hhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChH-------HHHHHHHHHHHhcCHHHHHH
Q 002100 627 HGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSL-------LRFRQSLLLLRLNSQKAAMR 699 (967)
Q Consensus 627 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~-------~~~~~g~~~~~~g~~~~A~~ 699 (967)
.-..-.+.....+++|.+| +..|++.....-+++. .++..|++++-..+.-.+..
T Consensus 155 KC~lKvA~yaa~leqY~~A------------------i~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ 216 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKA------------------IDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQR 216 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHH
Confidence 0112345556677777777 7777777766555543 34566788888888888888
Q ss_pred HHHHHHhcCCchhHH
Q 002100 700 SLRLARNYSTSEHEK 714 (967)
Q Consensus 700 ~l~~al~~~p~~~~a 714 (967)
.+++..+.+|.....
T Consensus 217 ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 217 ALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHhcCCccccc
Confidence 888888888886543
No 231
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.68 E-value=0.14 Score=56.27 Aligned_cols=61 Identities=11% Similarity=-0.025 Sum_probs=48.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHH
Q 002100 889 AAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLE 953 (967)
Q Consensus 889 a~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~ 953 (967)
|.-++.+|+|.++.-+-.=..++.|.+.++..+|.+.....+|++|...+.+. -| +.++.+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~-n~~~~d 529 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL---PP-NERMRD 529 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC---CC-chhhHH
Confidence 44567789999999888888889999889999999999999999998887653 33 444544
No 232
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.67 E-value=0.014 Score=65.22 Aligned_cols=98 Identities=15% Similarity=0.078 Sum_probs=86.9
Q ss_pred CChHHHHHHHHHhhccCCCCc-hHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHH
Q 002100 862 CDRDMAKSDLSMATQLDPMRT-YPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCE 939 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~-~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~ 939 (967)
|+...|+.++..|+-+.|... ....++|.++.+.|-..+|-..+.+++.+... +-..+.+|..|..+.+.+.|++.++
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~ 700 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFR 700 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHH
Confidence 899999999999999999653 45789999999999999999999999998854 4477889999999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHH
Q 002100 940 AALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 940 ~al~~~P~~~~~l~l~~r~~ 959 (967)
+|+.++|++++.-+-+.++.
T Consensus 701 ~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 701 QALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHhcCCCChhhHHHHHHHH
Confidence 99999999998877666554
No 233
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.66 E-value=0.00022 Score=68.57 Aligned_cols=88 Identities=14% Similarity=0.110 Sum_probs=71.8
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCc----------HHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC---
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENK----------LAAAITEINRIIGFKV-SPDCLELRAWISIALED--- 601 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~--- 601 (967)
+.|.+.++.....+|.+++.+++.|.++.++.+ +++|+.-|++++.++| ..++++.+|.+|..++.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 889999999999999999999999998877643 5678888999999999 78999999999987653
Q ss_pred --------HHHHHHHHHHHHHhCCCchHHh
Q 002100 602 --------YDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 602 --------~~~A~~~~~~al~l~p~~~~~~ 623 (967)
|++|..+|+++...+|++....
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 7889999999999999988766
No 234
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.65 E-value=0.0002 Score=68.88 Aligned_cols=83 Identities=12% Similarity=0.047 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHc-------c-------CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCC--
Q 002100 834 RKAAYDEMTKLIEKARNNASAYEKRSE-------Y-------CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHK-- 897 (967)
Q Consensus 834 ~~~A~~~~~~al~~~p~~~~~~~~~~~-------~-------~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~-- 897 (967)
++.|.+.++.....+|.+++.+..-|. . .-+++|+.-|+.|+.++|+...+++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 456666666666666666665555441 1 123455555555556666666666666655554421
Q ss_pred ---------HHHHHHHHHHHHhcCCChH
Q 002100 898 ---------EAEAIAELSRAIAFKPDLQ 916 (967)
Q Consensus 898 ---------~~eAi~~~~kal~~~p~~~ 916 (967)
|++|..+|++|.+.+|+++
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 4444444444455555544
No 235
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.65 E-value=3.3e-05 Score=84.55 Aligned_cols=122 Identities=14% Similarity=0.096 Sum_probs=106.9
Q ss_pred CeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHHHHH---HHHHHhchhC
Q 002100 264 NDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLVL---ELLSFANRFC 340 (967)
Q Consensus 264 ~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~---~ll~~A~~~~ 340 (967)
+..|.+|+.+++++|++|++|+.....+.....+++.+ .++..++++..|.|+..- ....+.+. .++..+.++.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d--~~~~~~~~~~~F~~~~s~-~~~~~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLE--EKPEVLEALNGFQVLPSQ-VSSVERIFEKHPDLAAAFKYK 185 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccc--cchhhHhhhceEEEeccc-hHHHHHhhcCChhhhhccccc
Confidence 55699999999999999999999877766677778866 999999999999999776 34444554 8889999999
Q ss_pred hHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhh
Q 002100 341 CEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLREL 389 (967)
Q Consensus 341 ~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~ 389 (967)
.+.|+..|...+.+.+. ..++...+..+..+....+...|..++..-+
T Consensus 186 ~~~lk~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 233 (297)
T KOG1987|consen 186 NRHLKLACMPVLLSLIE-TLNVSQSLQEASNYDLKEAKSALTYVIAAGF 233 (297)
T ss_pred cHHHHHHHHHHHHHHHH-hhhhcccHHHhchhHHHHHHHHHHHHHhccc
Confidence 99999999999999998 8888999999999999999999999988733
No 236
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00013 Score=72.55 Aligned_cols=90 Identities=14% Similarity=0.164 Sum_probs=83.2
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALED 601 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~ 601 (967)
|.-++....| +.|+..|.+||.++|+.+..|.++|.++++.++|+.+.....++++++| ...+++.+|........
T Consensus 17 gnk~f~~k~y---~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 17 GNKCFIPKRY---DDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred cccccchhhh---chHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 4455555566 9999999999999999999999999999999999999999999999999 78899999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 002100 602 YDGALRDVRALLTL 615 (967)
Q Consensus 602 ~~~A~~~~~~al~l 615 (967)
|++|+..++++..+
T Consensus 94 ~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSL 107 (284)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999999776
No 237
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.60 E-value=5.4e-05 Score=75.62 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=54.8
Q ss_pred CCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccc--eEEeccCCCCHHHHHHHHHhHcCCCCC
Q 002100 253 DEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRRE--KVNFSQNGISVEAMRAAEEFSRTKMLD 322 (967)
Q Consensus 253 ~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~--~i~~~~~~~~~~~~~~~l~~~Yt~~~~ 322 (967)
....||-++.....|+|||++||+|||+|+.+.++.-...... .|.+- +++.++|+++|+|+|||+..
T Consensus 128 k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~a--g~dm~~feafLh~l~tgEfg 197 (401)
T KOG2838|consen 128 KVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFA--GFDMDAFEAFLHSLITGEFG 197 (401)
T ss_pred eeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhh--ccChHHHHHHHHHHHhcccc
Confidence 3457888888899999999999999999999987653322222 45554 49999999999999999983
No 238
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.58 E-value=0.2 Score=57.25 Aligned_cols=391 Identities=12% Similarity=-0.098 Sum_probs=224.4
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHH-HHHHHHhcCHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELR-AWISIALEDYDGALRDVRALL 613 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~l-a~~~~~~g~~~~A~~~~~~al 613 (967)
+.+...|...+...|.....|..-|..-.+.|..+.+++.|++.+.--| +.+.|... +.+-...|+.+.-...|+.|+
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 5667778888888899988999999999999999999999999999888 66655443 333335577777677788887
Q ss_pred HhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH---
Q 002100 614 TLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLR--- 690 (967)
Q Consensus 614 ~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~--- 690 (967)
.....+-....-+. ..+... ...++|..- ...|++.++.--.....++..-.-+..
T Consensus 142 ~~vG~dF~S~~lWd--kyie~e-n~qks~k~v------------------~~iyeRileiP~~~~~~~f~~f~~~l~~~~ 200 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWD--KYIEFE-NGQKSWKRV------------------ANIYERILEIPLHQLNRHFDRFKQLLNQNE 200 (577)
T ss_pred HhcccchhccHHHH--HHHHHH-hccccHHHH------------------HHHHHHHHhhhhhHhHHHHHHHHHHHhcCC
Confidence 76443322110000 001111 111112111 445555554322222222211111111
Q ss_pred ---hcCHHHHHHHHHHHHhc--CCc---hhHHHH-HHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCC
Q 002100 691 ---LNSQKAAMRSLRLARNY--STS---EHEKLV-YEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLN 761 (967)
Q Consensus 691 ---~g~~~~A~~~l~~al~~--~p~---~~~a~~-~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~ 761 (967)
+...+++++.-...... .+. ..+.+- ..-.+--..+..+++.....+.+.+..... .+
T Consensus 201 ~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~---~~---------- 267 (577)
T KOG1258|consen 201 EKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVY---QK---------- 267 (577)
T ss_pred hhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHH---Hh----------
Confidence 11222222211111100 000 000000 000011111223333333333332221000 00
Q ss_pred CCchHHHHHHHHHHhcCCCCC-----CchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH--HHHHHHHHHHHHhCCH
Q 002100 762 PESSAYVIQLLEEALRCPSDG-----LRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT--RAHQGLARVYHLKNQR 834 (967)
Q Consensus 762 ~~~~~~a~~~le~~~~~~~~~-----~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~--~a~~~la~~~~~~g~~ 834 (967)
.........-.|...+.+..+ ...-..|......-...|+++...-.|++++-+-.. ..|...++-....|+.
T Consensus 268 s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~ 347 (577)
T KOG1258|consen 268 SEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDV 347 (577)
T ss_pred hHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCch
Confidence 000001111122222222111 122245666667778899999999999999985433 4899999999999999
Q ss_pred HHHHHHHHHHHHHcc-CCHHHHHHHH---cc-CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHH---HHHH
Q 002100 835 KAAYDEMTKLIEKAR-NNASAYEKRS---EY-CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAI---AELS 906 (967)
Q Consensus 835 ~~A~~~~~~al~~~p-~~~~~~~~~~---~~-~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi---~~~~ 906 (967)
+-|...+..+.+..- ..+.....-+ ++ |+++.|...|++..+-.|....+-...+....+.|+.+.+. ..+.
T Consensus 348 ~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s 427 (577)
T KOG1258|consen 348 SLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYS 427 (577)
T ss_pred hHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHH
Confidence 999999888887663 3444433333 23 89999999999999888999998888888899999999998 4444
Q ss_pred HHHhcCCChH----HHHHHHHH-HHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 002100 907 RAIAFKPDLQ----LLHLRAAF-HDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATE 960 (967)
Q Consensus 907 kal~~~p~~~----~~~~~a~~-~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~ 960 (967)
...+-..++. .+...++. +.-.++.+.|...+.++++..|.+.....-+.++.-
T Consensus 428 ~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 428 SIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFEL 486 (577)
T ss_pred HhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHH
Confidence 4443333321 44445554 445588999999999999999999988877777654
No 239
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.36 Score=57.84 Aligned_cols=210 Identities=12% Similarity=0.038 Sum_probs=110.3
Q ss_pred HHhhcchHHHHHHHHHHhccCccc---------ccchHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 002100 411 LAMVGHASFVLYYFLSQIGMEEDM---------KSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFK 481 (967)
Q Consensus 411 ~~~~~~e~~~l~~~l~~l~~~~~~---------~~~~~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~ 481 (967)
|..+.++.-+|......+-...+. ...+--.++++...-+-...++....-.--..++..+-..+-++.++
T Consensus 929 lI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLE 1008 (1666)
T KOG0985|consen 929 LINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLE 1008 (1666)
T ss_pred HHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 444666666666555444321111 11222344555544433322333333334456677778888888888
Q ss_pred HHHHhCc----hhHHHHHHHHHHhcCChHHHHHHHHHHHh-ccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhH
Q 002100 482 AAVEAGH----IYSLVGVARTKFKRGHKYSAYKLMNSLIS-DYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPY 556 (967)
Q Consensus 482 ~al~~~~----~~a~~~la~~~~~~g~~~~A~~~l~~~i~-~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~ 556 (967)
+.+-.+. ...+..|-.+-..+.+.....++++++-. ..+..+.+......| ++|.+.|.+- .-+..+.
T Consensus 1009 KIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~Ly---EEAF~ifkkf----~~n~~A~ 1081 (1666)
T KOG0985|consen 1009 KIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLY---EEAFAIFKKF----DMNVSAI 1081 (1666)
T ss_pred HHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHH---HHHHHHHHHh----cccHHHH
Confidence 8775533 22233333333344455556666666544 334556666666677 7777777652 1111111
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhH
Q 002100 557 KYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQ 636 (967)
Q Consensus 557 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~ 636 (967)
. ......+..+.|.+.-++.- .+..|..+|...++.|...+|++.|-++ +++..+ ...-.+.
T Consensus 1082 ~---VLie~i~~ldRA~efAe~~n----~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y------~eVi~~a 1143 (1666)
T KOG0985|consen 1082 Q---VLIENIGSLDRAYEFAERCN----EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNY------LEVIDVA 1143 (1666)
T ss_pred H---HHHHHhhhHHHHHHHHHhhC----ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHH------HHHHHHH
Confidence 1 12223344455544433321 4777888888888888888888887654 344444 2223445
Q ss_pred HHhhchhhH
Q 002100 637 PLVQQWSQA 645 (967)
Q Consensus 637 ~~~~~~~~A 645 (967)
...+.|++-
T Consensus 1144 ~~~~~~edL 1152 (1666)
T KOG0985|consen 1144 SRTGKYEDL 1152 (1666)
T ss_pred HhcCcHHHH
Confidence 556666655
No 240
>COG4907 Predicted membrane protein [Function unknown]
Probab=97.52 E-value=7e-05 Score=80.24 Aligned_cols=11 Identities=18% Similarity=0.166 Sum_probs=5.5
Q ss_pred HHHHHhhhhcc
Q 002100 9 FFTTMRSLKII 19 (967)
Q Consensus 9 ~~~~~~~~~~~ 19 (967)
.+..||.+..+
T Consensus 528 Vvkam~~~~~~ 538 (595)
T COG4907 528 VVKAMRKALDM 538 (595)
T ss_pred HHHHHHHhCcH
Confidence 34446655544
No 241
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.51 E-value=7.4e-05 Score=67.32 Aligned_cols=79 Identities=14% Similarity=0.184 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHHhhhhh--------hcCCchhHhhhhccchHHHHHHhhcchHHHHHHHHHHhccCcc
Q 002100 362 AVMLIEYGLEEAAYLLVAACLQVLLRELP--------CSMQNPNVMRIFCSAEARERLAMVGHASFVLYYFLSQIGMEED 433 (967)
Q Consensus 362 ~~~~~~~A~~~~~~~L~~~c~~~i~~~~~--------~~l~~~~~~~ll~s~~~~~r~~~~~~e~~~l~~~l~~l~~~~~ 433 (967)
|+.++.+|..|++++|.+.|.+||.+||. ..++.+.+..++.++++. +.+|..++.+++.|+..+.+
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~-----v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLN-----VSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS-------ECTCCCHHHHHHHHHHCTHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccc-----cccHHHHHHHHHHHHHhCHH
Confidence 68899999999999999999999999999 456667777788888887 77888999999999998877
Q ss_pred cccchHHHHHHH
Q 002100 434 MKSNTTVMLLER 445 (967)
Q Consensus 434 ~~~~~~~~ll~~ 445 (967)
.+.+....+++.
T Consensus 76 ~r~~~~~~Ll~~ 87 (103)
T PF07707_consen 76 NREEHLKELLSC 87 (103)
T ss_dssp HHTTTHHHHHCC
T ss_pred HHHHHHHHHHHh
Confidence 677777777654
No 242
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0019 Score=64.55 Aligned_cols=120 Identities=20% Similarity=0.235 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHH--hcCChHHHHHHHHHHHhccCcchhHHHHHhhcCCh
Q 002100 458 LAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKF--KRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSG 535 (967)
Q Consensus 458 ~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~--~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~ 535 (967)
.++++-|+-++..|+|.+|...|..|+-. +-.+.. +=|..
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~--------l~~L~lkEkP~e~------------------------------ 220 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIIC--------LRNLQLKEKPGEP------------------------------ 220 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHH--------HHHHHhccCCCCh------------------------------
Confidence 46788999999999999999999998753 000000 00000
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
+.++++......+.+.+.++...|+|-++++..+.++...| +..+|+.+|..+...-+.++|..++.++|+
T Consensus 221 --------eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 221 --------EWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred --------HHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 11122222334455566666666666666666666666666 666666666666666666666666666666
Q ss_pred hCCCchHHh
Q 002100 615 LDPSYMMFY 623 (967)
Q Consensus 615 l~p~~~~~~ 623 (967)
++|.-..+.
T Consensus 293 ldpslasvV 301 (329)
T KOG0545|consen 293 LDPSLASVV 301 (329)
T ss_pred cChhhHHHH
Confidence 666544443
No 243
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.48 E-value=0.00015 Score=79.65 Aligned_cols=90 Identities=19% Similarity=0.181 Sum_probs=87.0
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
+++.|+..|.+||+++|+.+..+-+++.++...+++..|+..+.++++.+| ...+|+.+|....+++.+.+|+..|++.
T Consensus 19 ~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~ 98 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKV 98 (476)
T ss_pred hHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHh
Confidence 449999999999999999999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHhCCCchHHh
Q 002100 613 LTLDPSYMMFY 623 (967)
Q Consensus 613 l~l~p~~~~~~ 623 (967)
..+.|+.+.+.
T Consensus 99 ~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 99 KKLAPNDPDAT 109 (476)
T ss_pred hhcCcCcHHHH
Confidence 99999999887
No 244
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.48 E-value=0.31 Score=58.99 Aligned_cols=112 Identities=13% Similarity=0.003 Sum_probs=72.5
Q ss_pred HHHhHHHHHhcccHHHHHHHHHHHhc-----c-C-cH---------------------HHHHHHHHHHHHhCCHHHHHHH
Q 002100 789 LNNLGSVYVDCEKLDLAADCYMNALN-----I-K-HT---------------------RAHQGLARVYHLKNQRKAAYDE 840 (967)
Q Consensus 789 ~~~lg~~~~~~g~~~~A~~~~~~Al~-----~-~-~~---------------------~a~~~la~~~~~~g~~~~A~~~ 840 (967)
|..-|......+..++|.+++.++++ . . +. ..++..+...+-.+++..|...
T Consensus 304 y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~ 383 (608)
T PF10345_consen 304 YFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQE 383 (608)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 34446667777777788888888876 1 0 00 1345566677788999999888
Q ss_pred HHHHHHHccC---------CHHHHHHHHcc----CChHHHHHHHH--------HhhccCCCC---chHHHHHHHHHHhCC
Q 002100 841 MTKLIEKARN---------NASAYEKRSEY----CDRDMAKSDLS--------MATQLDPMR---TYPYRYRAAVLMDDH 896 (967)
Q Consensus 841 ~~~al~~~p~---------~~~~~~~~~~~----~~~~~A~~~l~--------~al~l~p~~---~~~~~~la~~~~~~g 896 (967)
+..+.+.... .+..++..|.+ |+.+.|+..|. .+....+.+ ..+..++..++...+
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~ 463 (608)
T PF10345_consen 384 LEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYES 463 (608)
T ss_pred HHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhc
Confidence 8877665322 35566666654 89999999997 444444443 234556777777665
Q ss_pred CHHH
Q 002100 897 KEAE 900 (967)
Q Consensus 897 ~~~e 900 (967)
....
T Consensus 464 ~~~~ 467 (608)
T PF10345_consen 464 SRDD 467 (608)
T ss_pred ccch
Confidence 5333
No 245
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.46 E-value=0.0076 Score=66.86 Aligned_cols=187 Identities=12% Similarity=-0.022 Sum_probs=119.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCC
Q 002100 684 QSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPE 763 (967)
Q Consensus 684 ~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~ 763 (967)
+-.-..+..++++-++.-++|++++|+.+.+|..++.-. ..-..+|...|+++++.....- .+.......+
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~l---g~s~~~~~~g---- 244 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASL---GKSQFLQHHG---- 244 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhh---chhhhhhccc----
Confidence 344456678888999999999999999999998887522 2346788888888886544211 0000000000
Q ss_pred chHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc----HHHHHHHHHHHHHhCCHHHHHH
Q 002100 764 SSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH----TRAHQGLARVYHLKNQRKAAYD 839 (967)
Q Consensus 764 ~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~----~~a~~~la~~~~~~g~~~~A~~ 839 (967)
...+...+ .+......+-..+|.+..+.|+.++|++.|+..++..+ ..++.+|..++..++.+.++..
T Consensus 245 ------~~~e~~~~--Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 245 ------HFWEAWHR--RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred ------chhhhhhc--cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 00000000 00111224556789999999999999999999997433 3489999999999999999999
Q ss_pred HHHHHHHH-ccCCHHHHHHHHcc-----CC---------------hHHHHHHHHHhhccCCCCchHHHH
Q 002100 840 EMTKLIEK-ARNNASAYEKRSEY-----CD---------------RDMAKSDLSMATQLDPMRTYPYRY 887 (967)
Q Consensus 840 ~~~~al~~-~p~~~~~~~~~~~~-----~~---------------~~~A~~~l~~al~l~p~~~~~~~~ 887 (967)
.+.+.-+. -|+.+...+..+.+ ++ -..|.+.+.+|++.||..+..+..
T Consensus 317 lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe 385 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE 385 (539)
T ss_pred HHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence 88886433 25555555544422 11 134667788888888876655443
No 246
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.014 Score=58.72 Aligned_cols=124 Identities=13% Similarity=0.042 Sum_probs=65.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCc---h---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhh
Q 002100 684 QSLLLLRLNSQKAAMRSLRLARNYSTS---E---HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALAD 757 (967)
Q Consensus 684 ~g~~~~~~g~~~~A~~~l~~al~~~p~---~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~ 757 (967)
++--.+...+++.|+..|++++..-.+ . .+.+...++++.+..++++|-..+.+-....-...
T Consensus 116 KAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~----------- 184 (308)
T KOG1585|consen 116 KAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD----------- 184 (308)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh-----------
Confidence 333344555666777777666543222 1 22344456667777777777666655442221111
Q ss_pred cCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC------cHHHHHHHHHHHHHh
Q 002100 758 SSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK------HTRAHQGLARVYHLK 831 (967)
Q Consensus 758 ~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~------~~~a~~~la~~~~~~ 831 (967)
.-+....++...-.+|+...+|..|..+|+..-.+. ...+..+|-.. +..
T Consensus 185 -----------------------~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd~ 240 (308)
T KOG1585|consen 185 -----------------------AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YDE 240 (308)
T ss_pred -----------------------hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH-hcc
Confidence 011122344444456666778888888888866532 12245554443 345
Q ss_pred CCHHHHHHHHH
Q 002100 832 NQRKAAYDEMT 842 (967)
Q Consensus 832 g~~~~A~~~~~ 842 (967)
|+.++..+.+.
T Consensus 241 gD~E~~~kvl~ 251 (308)
T KOG1585|consen 241 GDIEEIKKVLS 251 (308)
T ss_pred CCHHHHHHHHc
Confidence 66666655554
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.0044 Score=64.74 Aligned_cols=150 Identities=13% Similarity=0.005 Sum_probs=121.8
Q ss_pred HHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHH-ccCCHHHHHHHHc-------cC
Q 002100 793 GSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKNQRKAAYDEMTKLIEK-ARNNASAYEKRSE-------YC 862 (967)
Q Consensus 793 g~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~-------~~ 862 (967)
+.+....|+..+|...+++.++.-|++ ++..--++++..|+...-...+++++-. +++.+-.-+..|. .|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 345567899999999999999977766 6666778899999999999999999987 6766544444443 38
Q ss_pred ChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHHcCChHHHHHH
Q 002100 863 DRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-----QLLHLRAAFHDSMGDHLHTQRD 937 (967)
Q Consensus 863 ~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-----~~~~~~a~~~~~~g~~~~A~~~ 937 (967)
-+++|...-+++++++|.+..+....+.++...+++.++.+...+--..-.+. .-|..-|.++..-+.|+.|+..
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999999999999999999999999999999999999887654332222 2455678899999999999999
Q ss_pred HHHHH
Q 002100 938 CEAAL 942 (967)
Q Consensus 938 ~~~al 942 (967)
|.+-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 98654
No 248
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.62 Score=55.98 Aligned_cols=229 Identities=13% Similarity=0.052 Sum_probs=144.5
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc--chHHHHHHHH
Q 002100 676 GKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQR--SFEAFFLKAY 753 (967)
Q Consensus 676 ~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~~~ 753 (967)
+.+..|..+|...++.+...+|+..|-++ +++..|...-.+..+.|.|++-+.++.-+-+.-. .-..... +
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi--~ 1174 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELI--F 1174 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHH--H
Confidence 45778999999999999999999988664 4566788888888999999999999887765433 2121112 2
Q ss_pred HhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCC
Q 002100 754 ALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQ 833 (967)
Q Consensus 754 ~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~ 833 (967)
++|.+. -+.-+|+.+.- |..+ -....|+-.+..+.|+.|.-+|... .-+..||..+..+|+
T Consensus 1175 AyAkt~--------rl~elE~fi~g----pN~A-~i~~vGdrcf~~~~y~aAkl~y~~v------SN~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1175 AYAKTN--------RLTELEEFIAG----PNVA-NIQQVGDRCFEEKMYEAAKLLYSNV------SNFAKLASTLVYLGE 1235 (1666)
T ss_pred HHHHhc--------hHHHHHHHhcC----CCch-hHHHHhHHHhhhhhhHHHHHHHHHh------hhHHHHHHHHHHHHH
Confidence 222221 11222333322 2222 3345688888999999998888543 356678888999999
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccC-CCCchHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002100 834 RKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLD-PMRTYPYRYRAAVLMDDHKEAEAIAELSRA 908 (967)
Q Consensus 834 ~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~-p~~~~~~~~la~~~~~~g~~~eAi~~~~ka 908 (967)
|..|.+.-+++- +...|-.-... +++.-|.-+ .++ --+++-+-.+-..|...|-++|-|..++.+
T Consensus 1236 yQ~AVD~aRKAn-----s~ktWK~VcfaCvd~~EFrlAQiC-----GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1236 YQGAVDAARKAN-----STKTWKEVCFACVDKEEFRLAQIC-----GLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHHhhhcc-----chhHHHHHHHHHhchhhhhHHHhc-----CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 999988877663 23334333311 222222111 111 012344556777888899999999999988
Q ss_pred HhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 909 IAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAA 941 (967)
Q Consensus 909 l~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~a 941 (967)
+.+.-.. ..+..+|.+|-+ =++++-.+.++-.
T Consensus 1306 LGLERAHMgmfTELaiLYsk-ykp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1306 LGLERAHMGMFTELAILYSK-YKPEKMMEHLKLF 1338 (1666)
T ss_pred hchhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 8765442 355556666544 4566666655543
No 249
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.36 E-value=0.41 Score=53.84 Aligned_cols=381 Identities=12% Similarity=0.018 Sum_probs=206.1
Q ss_pred HHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchH
Q 002100 543 NTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMM 621 (967)
Q Consensus 543 ~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 621 (967)
++-|+.+|.+..+|+.+-.-+..+ .+++..+.|++.+...| .+.+|.....-.+..++|+.....|.+.|..-=+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 677899999999999998877777 99999999999999999 8999999999999999999999999988864222 22
Q ss_pred HhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHH---------Hhc
Q 002100 622 FYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLL---------RLN 692 (967)
Q Consensus 622 ~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~---------~~g 692 (967)
.|. ..+..+....++-..+...|. .|......-+..++....+|......+. .+.
T Consensus 88 LW~-----lYl~YVR~~~~~~~~~r~~m~-----------qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~Q 151 (656)
T KOG1914|consen 88 LWK-----LYLSYVRETKGKLFGYREKMV-----------QAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQ 151 (656)
T ss_pred HHH-----HHHHHHHHHccCcchHHHHHH-----------HHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHH
Confidence 221 112222222222222210110 0011111222244555455543333322 222
Q ss_pred CHHHHHHHHHHHHhcCCchhHH-HH-------------HHHHHHHHcCChHHHHHHHHHHHhccc----chHH-------
Q 002100 693 SQKAAMRSLRLARNYSTSEHEK-LV-------------YEGWILYDTGHREEALAKAEESISIQR----SFEA------- 747 (967)
Q Consensus 693 ~~~~A~~~l~~al~~~p~~~~a-~~-------------~lg~~~~~~g~~~eA~~~~~~al~~~p----~~~~------- 747 (967)
+.+.-.+.|++++..--.+.+- |. ..-.+......|..|.+.+++...+-. ..++
T Consensus 152 RI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~ 231 (656)
T KOG1914|consen 152 RITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTK 231 (656)
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCh
Confidence 4445555777777643333221 10 011122233445556665554432211 0000
Q ss_pred -------HHHHHHHhhhcCCCC----C-chHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhccc--------------
Q 002100 748 -------FFLKAYALADSSLNP----E-SSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEK-------------- 801 (967)
Q Consensus 748 -------~~~~~~~la~~~~~~----~-~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~-------------- 801 (967)
.+...+..-...... . -..+..=..++.+....- ..+.|+..+......++
T Consensus 232 ~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~---~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~ 308 (656)
T KOG1914|consen 232 DEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGY---HPEIWYDYSMYLIEISDLLTEKGDVPDAKSL 308 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhhHHHHHhcccccchhh
Confidence 000001110100000 0 011111112222221111 12333333333333333
Q ss_pred HHHHHHHHHHHhcc-CcHH--HHHHHHHHHHHhC---CHHHHHHHHHHHHHHccCCHH-HHHHHHcc----CChHHHHHH
Q 002100 802 LDLAADCYMNALNI-KHTR--AHQGLARVYHLKN---QRKAAYDEMTKLIEKARNNAS-AYEKRSEY----CDRDMAKSD 870 (967)
Q Consensus 802 ~~~A~~~~~~Al~~-~~~~--a~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~-~~~~~~~~----~~~~~A~~~ 870 (967)
.+++..+|+++++. .... .++.++..-...- +++.-...+++++.....+.. +|...-.+ .-...|...
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 67888888888872 2222 4444554333322 366666777777765433222 22222221 445677778
Q ss_pred HHHhhccCCCCchHHHHHHH-HHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 871 LSMATQLDPMRTYPYRYRAA-VLMDDHKEAEAIAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEAALCL 944 (967)
Q Consensus 871 l~~al~l~p~~~~~~~~la~-~~~~~g~~~eAi~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~ 944 (967)
|.+|-+..-....++..-|. -|.-.++.+-|...|+--+...++.. ........+..+++-..|...|++++..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 88876654433344444443 34456999999999999999988854 4445677888899999999999999987
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.35 E-value=0.094 Score=60.89 Aligned_cols=147 Identities=14% Similarity=0.011 Sum_probs=106.1
Q ss_pred cccHHHHHHHHHHHhccCcHH-H--------HHHHHHHH--H--HhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----
Q 002100 799 CEKLDLAADCYMNALNIKHTR-A--------HQGLARVY--H--LKNQRKAAYDEMTKLIEKARNNASAYEKRSEY---- 861 (967)
Q Consensus 799 ~g~~~~A~~~~~~Al~~~~~~-a--------~~~la~~~--~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~---- 861 (967)
.||-+.++..+.++.+..... . ++...... . ...+.+.|.+.++...+..|+....+...|.+
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~ 280 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK 280 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 477778888888777733221 1 11111111 1 24567778888888888888888877777753
Q ss_pred CChHHHHHHHHHhhccCCC----CchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH--HHHHHHHHHHHcCCh----
Q 002100 862 CDRDMAKSDLSMATQLDPM----RTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ--LLHLRAAFHDSMGDH---- 931 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~----~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~--~~~~~a~~~~~~g~~---- 931 (967)
|+.++|+..|++++..... ....++.+|++++-+++|++|..+|.+..+.+.-.. ..|..|.++...|+.
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~ 360 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAK 360 (468)
T ss_pred cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhh
Confidence 8888888888888754332 234577899999999999999999999998776654 555679999999999
Q ss_pred ---HHHHHHHHHHHhcC
Q 002100 932 ---LHTQRDCEAALCLD 945 (967)
Q Consensus 932 ---~~A~~~~~~al~~~ 945 (967)
++|...++++-.+.
T Consensus 361 ~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 361 EHKKEAEELFRKVPKLK 377 (468)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 88888888775443
No 251
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.23 Score=65.05 Aligned_cols=108 Identities=13% Similarity=0.042 Sum_probs=85.9
Q ss_pred CCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCC----------
Q 002100 782 GLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNN---------- 851 (967)
Q Consensus 782 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------- 851 (967)
....+..|.+.|.+....|+++.|-.+.-+|.+...+.++...|..++.+|+...|+..+++.++++-.+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 3456789999999999999999999999999998888999999999999999999999999999765322
Q ss_pred -------HHHHHHHHcc----CC--hHHHHHHHHHhhccCCCCchHHHHHH
Q 002100 852 -------ASAYEKRSEY----CD--RDMAKSDLSMATQLDPMRTYPYRYRA 889 (967)
Q Consensus 852 -------~~~~~~~~~~----~~--~~~A~~~l~~al~l~p~~~~~~~~la 889 (967)
..+....+.| ++ -..-+..|..+.+..|.....++.+|
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 1122222222 33 34567788888899888777777777
No 252
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.35 E-value=0.00018 Score=49.72 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=29.2
Q ss_pred HHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHH
Q 002100 542 LNTATELDPTLSYPYKYRAILLVEENKLAAAIT 574 (967)
Q Consensus 542 ~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~ 574 (967)
|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999998863
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.35 E-value=0.00041 Score=51.35 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 002100 916 QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDK 957 (967)
Q Consensus 916 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r 957 (967)
+++..+|.+|..+|++++|++.|+++++.+|+|++++..+.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467778888888888888888888888888888888776654
No 254
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.31 E-value=0.086 Score=62.70 Aligned_cols=281 Identities=15% Similarity=0.059 Sum_probs=153.3
Q ss_pred ChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhh---
Q 002100 472 EYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATEL--- 548 (967)
Q Consensus 472 ~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l--- 548 (967)
+-.+|..+|+.+.+.++..+...++.+++.-+. +.-.|.+.|+.+|..+.+-
T Consensus 227 ~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~-------------------------g~~~d~e~a~~~l~~aa~~~~~ 281 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHSEAQYALGICYLAGTY-------------------------GVTQDLESAIEYLKLAAESFKK 281 (552)
T ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHhhccc-------------------------cccccHHHHHHHHHHHHHHHHH
Confidence 567899999999999998888888776643211 1111445666666655541
Q ss_pred --CCCCchhHHHHHHHHHhcC-----cHHHHHHHHHHHhccCCChhHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCC
Q 002100 549 --DPTLSYPYKYRAILLVEEN-----KLAAAITEINRIIGFKVSPDCLELRAWISIALE---DYDGALRDVRALLTLDPS 618 (967)
Q Consensus 549 --~P~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g---~~~~A~~~~~~al~l~p~ 618 (967)
.-.++.+.+.+|.+|.... +++.|+..|.++-... ++++.+.+|.+|..-. ++..|..+|..+....
T Consensus 282 ~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-- 358 (552)
T KOG1550|consen 282 AATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-- 358 (552)
T ss_pred HHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--
Confidence 0114456666676666632 5566666666664432 4556666666666544 4455555555554332
Q ss_pred chHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH----hcCH
Q 002100 619 YMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLR----LNSQ 694 (967)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~----~g~~ 694 (967)
...+.++++.+|.. ..+.
T Consensus 359 ----------------------------------------------------------~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 359 ----------------------------------------------------------HILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ----------------------------------------------------------ChHHHHHHHHHHHhCCCcCCCH
Confidence 22233333333332 3466
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHc-CChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHH
Q 002100 695 KAAMRSLRLARNYSTSEHEKLVYEGWILYDT-GHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLE 773 (967)
Q Consensus 695 ~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~-g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le 773 (967)
..|...++++.+.. .+.+...++..+..- ++++.+...+....+..-.....
T Consensus 381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~------------------------- 433 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQS------------------------- 433 (552)
T ss_pred HHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhh-------------------------
Confidence 77888888887777 344555555554433 66666666555444332211100
Q ss_pred HHhcCCCCCCchHHHHHHhHHHHHh----cccHHHHHHHHHHHhccCcHHHHHHHHHHHHHh----CCHHHHHHHHHHHH
Q 002100 774 EALRCPSDGLRKGQALNNLGSVYVD----CEKLDLAADCYMNALNIKHTRAHQGLARVYHLK----NQRKAAYDEMTKLI 845 (967)
Q Consensus 774 ~~~~~~~~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~----g~~~~A~~~~~~al 845 (967)
....+......... ..+...+...+.++...++..+...++.+|+.- .+++.|...|+++-
T Consensus 434 -----------~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~ 502 (552)
T KOG1550|consen 434 -----------NAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARAS 502 (552)
T ss_pred -----------HHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHH
Confidence 00000000001111 235566667777777777777777777776654 34667777776666
Q ss_pred HHccCCHHHHHHHHcc-------CChHHHHHHHHHhhccCC
Q 002100 846 EKARNNASAYEKRSEY-------CDRDMAKSDLSMATQLDP 879 (967)
Q Consensus 846 ~~~p~~~~~~~~~~~~-------~~~~~A~~~l~~al~l~p 879 (967)
... +.+.+.+|.+ .....|...|.++.+.+.
T Consensus 503 ~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 503 EQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDS 540 (552)
T ss_pred Hhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCc
Confidence 655 4555555522 115556666666555444
No 255
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0029 Score=63.31 Aligned_cols=75 Identities=20% Similarity=0.215 Sum_probs=67.0
Q ss_pred CCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHH
Q 002100 878 DPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTL 952 (967)
Q Consensus 878 ~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l 952 (967)
+......+.+.+.++...|+|-++++..+.++...|.+. +|+.+|.++...=+..+|.++|.++|+++|.-..+.
T Consensus 226 dk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 226 DKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 334456788999999999999999999999999999975 999999999999999999999999999999866543
No 256
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.31 E-value=0.0097 Score=58.05 Aligned_cols=149 Identities=22% Similarity=0.246 Sum_probs=82.0
Q ss_pred HHHHHHHHHcCChH---HHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHh
Q 002100 716 VYEGWILYDTGHRE---EALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNL 792 (967)
Q Consensus 716 ~~lg~~~~~~g~~~---eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~l 792 (967)
...||-|+...+.+ +|-..|+++++.-.... + .....++.+.........-..+-..+
T Consensus 35 ~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~---------------~----~~~~~~ekf~~~n~~t~Ya~laaL~l 95 (207)
T COG2976 35 GLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKK---------------P----KSIAAAEKFVQANGKTIYAVLAALEL 95 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------------c----hhHHHHHHHHhhccccHHHHHHHHHH
Confidence 34566666655444 66777776663221000 0 22233333333333333333455566
Q ss_pred HHHHHhcccHHHHHHHHHHHhcc-CcHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHH
Q 002100 793 GSVYVDCEKLDLAADCYMNALNI-KHTR----AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMA 867 (967)
Q Consensus 793 g~~~~~~g~~~~A~~~~~~Al~~-~~~~----a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A 867 (967)
+..+.+.+++++|+..++.++.. .... +-.+||++...+|++++|+..++...+..-
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w------------------ 157 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW------------------ 157 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH------------------
Confidence 77777888888888888877752 2211 566677777777777777766654332110
Q ss_pred HHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 868 KSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 868 ~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
.+.....+|.++...|+.++|...|+++++..++
T Consensus 158 -------------~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 158 -------------AAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred -------------HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 0111233566666666666666666666666544
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.31 E-value=0.025 Score=62.88 Aligned_cols=201 Identities=11% Similarity=-0.004 Sum_probs=119.3
Q ss_pred HHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCc-chhHHHHHhhcCChHHHHHHHH
Q 002100 465 VVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTP-VGWMYQERSLYCSGKEKMMDLN 543 (967)
Q Consensus 465 ~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~-~g~~~~~~~~y~~~~~A~~~~~ 543 (967)
....+..+.+.-++.-.+||+++|.-+.+++-...-......+|.++++++++.-.. .+...+... ...+-
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~--------~g~~~ 247 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQH--------HGHFW 247 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhc--------ccchh
Confidence 345677889999999999999988554444323223334456788888887763221 111111110 00011
Q ss_pred HhHhhCCCC--chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC---ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CC
Q 002100 544 TATELDPTL--SYPYKYRAILLVEENKLAAAITEINRIIGFKV---SPDCLELRAWISIALEDYDGALRDVRALLTL-DP 617 (967)
Q Consensus 544 ~al~l~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~l-~p 617 (967)
.....-+.+ ..+...+|.+..+.|+.++|++.+...++..| +..+++++..+++.++.|.++...+.+-=+. -|
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 111111222 45567789999999999999999999999888 3568999999999999999998888775332 23
Q ss_pred CchHHhhhhhhhhhHhhhHHHh-hchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHH
Q 002100 618 SYMMFYGQLHGDNLVETLQPLV-QQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRF 682 (967)
Q Consensus 618 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~ 682 (967)
+..... |..+++..+. ++--.++ ....+--+...+.|++.++++++.||..+....
T Consensus 328 kSAti~------YTaALLkaRav~d~fs~e---~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 328 KSATIC------YTAALLKARAVGDKFSPE---AASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred chHHHH------HHHHHHHHHhhccccCch---hhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 333332 3444443331 1100000 000011111224467888899999988776655
No 258
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.30 E-value=0.0092 Score=65.40 Aligned_cols=145 Identities=15% Similarity=0.131 Sum_probs=114.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH-hcccchHHHHHHHHHhhhcCCC
Q 002100 683 RQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI-SIQRSFEAFFLKAYALADSSLN 761 (967)
Q Consensus 683 ~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al-~~~p~~~~~~~~~~~la~~~~~ 761 (967)
..-..|+...+...+.+-.+.++....+.+.++...+..++..|++.+|.+.+...= ...|.+.
T Consensus 211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~--------------- 275 (696)
T KOG2471|consen 211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGT--------------- 275 (696)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCcc---------------
Confidence 344556778888889998899988888889999999999999999999998876531 1112110
Q ss_pred CCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc-----------cCc---------HHHH
Q 002100 762 PESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN-----------IKH---------TRAH 821 (967)
Q Consensus 762 ~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-----------~~~---------~~a~ 821 (967)
..........|+|+|.++++.+.|.-+..+|.+|+. +.+ -.++
T Consensus 276 -----------------~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eil 338 (696)
T KOG2471|consen 276 -----------------ITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEIL 338 (696)
T ss_pred -----------------ccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhH
Confidence 000011234679999999999999999999999994 111 1278
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHH
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS 859 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 859 (967)
++.|..|...|+.-.|.+.|.+++.....++..|..++
T Consensus 339 YNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlA 376 (696)
T KOG2471|consen 339 YNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLA 376 (696)
T ss_pred HhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 99999999999999999999999999999999999887
No 259
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.29 E-value=0.002 Score=69.53 Aligned_cols=140 Identities=16% Similarity=0.080 Sum_probs=87.0
Q ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhccCc--HHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHccCCHHHHHHHHccCCh
Q 002100 788 ALNNLGSVYVDCEKLDLAADCYMNALNIKH--TRAHQGLARVYHL-KNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDR 864 (967)
Q Consensus 788 a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--~~a~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 864 (967)
+|..+.......+..+.|...|.+|.+... ..+|...|.+.+. .++.+.|...|+.+++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~----------------- 65 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK----------------- 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----------------
Confidence 444455555555556666666666665322 2355555555444 33334355555555554
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHcCChHHHHHHHHH
Q 002100 865 DMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ----LLHLRAAFHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 865 ~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~----~~~~~a~~~~~~g~~~~A~~~~~~ 940 (967)
.|.+...|......+...++.+.|...|++++..-|... +|.....+-...|+.+...+..++
T Consensus 66 -------------f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 66 -------------FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp -------------HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred -------------CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455556666666677777888888888888887766633 677777777788888888888888
Q ss_pred HHhcCCCchhHHHHHHH
Q 002100 941 ALCLDPNHTDTLELYDK 957 (967)
Q Consensus 941 al~~~P~~~~~l~l~~r 957 (967)
+.+..|++..+..+.+|
T Consensus 133 ~~~~~~~~~~~~~f~~r 149 (280)
T PF05843_consen 133 AEELFPEDNSLELFSDR 149 (280)
T ss_dssp HHHHTTTS-HHHHHHCC
T ss_pred HHHHhhhhhHHHHHHHH
Confidence 88888887766655544
No 260
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.27 E-value=0.00017 Score=49.77 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=27.3
Q ss_pred HHHhhccCCCCchHHHHHHHHHHhCCCHHHHH
Q 002100 871 LSMATQLDPMRTYPYRYRAAVLMDDHKEAEAI 902 (967)
Q Consensus 871 l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi 902 (967)
|++|++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888888888888888888888888888886
No 261
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.11 Score=52.45 Aligned_cols=220 Identities=15% Similarity=0.081 Sum_probs=113.0
Q ss_pred HhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHh-CchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHH
Q 002100 449 SATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEA-GHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQ 527 (967)
Q Consensus 449 ~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~-~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~ 527 (967)
+.++..-.+..|..-+..|...++|++|..++.+|.+- ....++..-|..| +++ +.+..
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKay-------------Eqa-------amLak 82 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAY-------------EQA-------AMLAK 82 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHH-------------HHH-------HHHHH
Confidence 34444555667777788888889999999999999864 2233333322211 111 33334
Q ss_pred HHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHH
Q 002100 528 ERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALR 607 (967)
Q Consensus 528 ~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~ 607 (967)
+...+ .++...|++|..+ |.+.|..+.|-..++++-+ ....-+.++|+.
T Consensus 83 e~~kl---sEvvdl~eKAs~l--------------Y~E~GspdtAAmaleKAak--------------~lenv~Pd~Alq 131 (308)
T KOG1585|consen 83 ELSKL---SEVVDLYEKASEL--------------YVECGSPDTAAMALEKAAK--------------ALENVKPDDALQ 131 (308)
T ss_pred HHHHh---HHHHHHHHHHHHH--------------HHHhCCcchHHHHHHHHHH--------------HhhcCCHHHHHH
Confidence 44444 5566666655543 3333444333333333321 123334455555
Q ss_pred HHHHHHHhCC---CchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHH--hcCCCChHHHH
Q 002100 608 DVRALLTLDP---SYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHML--ANDPGKSLLRF 682 (967)
Q Consensus 608 ~~~~al~l~p---~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l--~~~p~~~~~~~ 682 (967)
.|++++.+-. ...+++... -..+.++..+++|++|- ...+..+.-.+ ...|.....+.
T Consensus 132 lYqralavve~~dr~~ma~el~---gk~sr~lVrl~kf~Eaa--------------~a~lKe~~~~~~~~~y~~~~k~~v 194 (308)
T KOG1585|consen 132 LYQRALAVVEEDDRDQMAFELY---GKCSRVLVRLEKFTEAA--------------TAFLKEGVAADKCDAYNSQCKAYV 194 (308)
T ss_pred HHHHHHHHHhccchHHHHHHHH---HHhhhHhhhhHHhhHHH--------------HHHHHhhhHHHHHhhcccHHHHHH
Confidence 5555444311 111121111 22344555555555551 00011111112 22233334455
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc----CCchhHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 683 RQSLLLLRLNSQKAAMRSLRLARNY----STSEHEKLVYEGWILYDTGHREEALAKAEE 737 (967)
Q Consensus 683 ~~g~~~~~~g~~~~A~~~l~~al~~----~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~ 737 (967)
..-.+|+-.++|..|.++++...+. .|++..++-+|-.. +..|+.++....+..
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YDEGDIEEIKKVLSS 252 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH-hccCCHHHHHHHHcC
Confidence 5566777788999999999886654 34555555555433 467888877766654
No 262
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.25 E-value=0.00036 Score=73.25 Aligned_cols=84 Identities=26% Similarity=0.276 Sum_probs=70.5
Q ss_pred CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHH
Q 002100 862 CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~ 940 (967)
|+++.|++.|..+++++|.....+-.++.++.+.++...|+..+..+++++|+.. .|-.++.++..+|+|++|..+++.
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 5678888888888888888888888888888888888888888888888888854 677788888888888888888888
Q ss_pred HHhcC
Q 002100 941 ALCLD 945 (967)
Q Consensus 941 al~~~ 945 (967)
+.+++
T Consensus 208 a~kld 212 (377)
T KOG1308|consen 208 ACKLD 212 (377)
T ss_pred HHhcc
Confidence 87765
No 263
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.001 Score=66.34 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=76.8
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
+..|.++|..+|..+.++.+++.++++.++++.+.....+++++.|+...+.+.+|..+.....+++|+..++++..+..
T Consensus 30 i~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r 109 (284)
T KOG4642|consen 30 IDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLR 109 (284)
T ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999976543
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.018 Score=60.40 Aligned_cols=167 Identities=9% Similarity=-0.041 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHH
Q 002100 588 CLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVV 667 (967)
Q Consensus 588 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~ 667 (967)
-....+.+....|++.+|...+.++|+-.|.+..++.. ...++...|+...- ...+
T Consensus 105 k~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kf------sh~a~fy~G~~~~~------------------k~ai 160 (491)
T KOG2610|consen 105 KRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKF------SHDAHFYNGNQIGK------------------KNAI 160 (491)
T ss_pred hhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhh------hhhHHHhccchhhh------------------hhHH
Confidence 34445666778899999999999999999998888733 23444444444333 6677
Q ss_pred HHHHhc-CCCChHHHH---HHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 668 HHMLAN-DPGKSLLRF---RQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 668 ~~~l~~-~p~~~~~~~---~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
++++.. +|+.|..-+ ..+..+...|-|++|.+.-+++++++|.+.-+....+.++...|++.++.+...+.-..-.
T Consensus 161 ~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr 240 (491)
T KOG2610|consen 161 EKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR 240 (491)
T ss_pred HHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh
Confidence 777766 666654444 4455677889999999999999999999999999999999999999999998887543322
Q ss_pred chHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc
Q 002100 744 SFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN 814 (967)
Q Consensus 744 ~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 814 (967)
... . ....-|...+..+.+.+.|+.|++.|.+-+-
T Consensus 241 ~s~-------m-----------------------------lasHNyWH~Al~~iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 241 QSW-------M-----------------------------LASHNYWHTALFHIEGAEYEKALEIYDREIW 275 (491)
T ss_pred hhh-------H-----------------------------HHhhhhHHHHHhhhcccchhHHHHHHHHHHH
Confidence 111 0 0012344457778888899999998876543
No 265
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.22 E-value=0.0012 Score=50.46 Aligned_cols=49 Identities=20% Similarity=0.377 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhhh
Q 002100 916 QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVNE 964 (967)
Q Consensus 916 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~~ 964 (967)
+.++.+|..+.++|+|++|++.++.+|++.|+|.++..+...+++++.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 3578899999999999999999999999999999999999999998764
No 266
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.21 E-value=0.065 Score=60.10 Aligned_cols=267 Identities=14% Similarity=0.101 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS--------EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFL 750 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~--------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 750 (967)
...+..+...+..++++++...++++...--. .....+..-.-+....+.+++.......... +.......
T Consensus 30 ~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~~-~~~~~~l~ 108 (352)
T PF02259_consen 30 EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLSQN-PQDLKSLL 108 (352)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhccc-HHHHHHHH
Confidence 56666777778999999999988887654211 1111111111222233344444443221110 11111111
Q ss_pred HHH--HhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC------cHHHHH
Q 002100 751 KAY--ALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK------HTRAHQ 822 (967)
Q Consensus 751 ~~~--~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~------~~~a~~ 822 (967)
..+ .+-....+.......+..=..++............+...+.+....|+++.|...+.++...+ .+.+.+
T Consensus 109 ~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~ 188 (352)
T PF02259_consen 109 KRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFL 188 (352)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHH
Confidence 111 111111122222333333233333333345566788999999999999999999999999855 566888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHccC-CH----HHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhC--
Q 002100 823 GLARVYHLKNQRKAAYDEMTKLIEKARN-NA----SAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDD-- 895 (967)
Q Consensus 823 ~la~~~~~~g~~~~A~~~~~~al~~~p~-~~----~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~-- 895 (967)
..+.+....|+..+|+..++..++.... .. ......+.....+.... ...-.........++..+|......
T Consensus 189 e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~l~~a~w~~~~~~ 267 (352)
T PF02259_consen 189 EYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISS-TNLDKESKELKAKAFLLLAKWLDELYS 267 (352)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccc-cchhhhhHHHHHHHHHHHHHHHHhhcc
Confidence 8999999999999999999998883222 10 00111000000000000 0000000011234555666666665
Q ss_pred ----CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHhcCCC
Q 002100 896 ----HKEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGD-----------------HLHTQRDCEAALCLDPN 947 (967)
Q Consensus 896 ----g~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~-----------------~~~A~~~~~~al~~~P~ 947 (967)
++.++++..|.++++..|+. .+++..|..+...=+ ...|+..|-+++...|.
T Consensus 268 ~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 268 KLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 88999999999999999984 477777776654422 13488888899988887
No 267
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.20 E-value=0.71 Score=53.39 Aligned_cols=51 Identities=22% Similarity=0.096 Sum_probs=36.6
Q ss_pred CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 862 CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
+.++-|...-+-+. ....+..+..+|..+...|++++|-+.|-.+|+++.-
T Consensus 977 ~afd~afdlari~~--k~k~~~vhlk~a~~ledegk~edaskhyveaiklnty 1027 (1636)
T KOG3616|consen 977 CAFDFAFDLARIAA--KDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTY 1027 (1636)
T ss_pred cchhhHHHHHHHhh--hccCccchhHHhhhhhhccchhhhhHhhHHHhhcccc
Confidence 34444444433332 2345678888999999999999999999999998754
No 268
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=0.02 Score=55.99 Aligned_cols=140 Identities=19% Similarity=0.138 Sum_probs=82.6
Q ss_pred chHHHHHHHHHHhccCcccccchHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHH
Q 002100 416 HASFVLYYFLSQIGMEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGV 495 (967)
Q Consensus 416 ~e~~~l~~~l~~l~~~~~~~~~~~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~l 495 (967)
.++..|..+...+..+ .......++.+....+..-.-.++...++..+.+.+++++|+..++.++.......+-.+
T Consensus 52 ~AS~~Y~~~i~~~~ak----~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l 127 (207)
T COG2976 52 EASAQYQNAIKAVQAK----KPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKAL 127 (207)
T ss_pred HHHHHHHHHHHHHhcC----CchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHH
Confidence 3344454444444322 113334444444444344455566667777777777777777777777654222211111
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHH
Q 002100 496 ARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITE 575 (967)
Q Consensus 496 a~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~ 575 (967)
+-.++|.+...+|++++|+..
T Consensus 128 -----------------------------------------------------------~~lRLArvq~q~~k~D~AL~~ 148 (207)
T COG2976 128 -----------------------------------------------------------AALRLARVQLQQKKADAALKT 148 (207)
T ss_pred -----------------------------------------------------------HHHHHHHHHHHhhhHHHHHHH
Confidence 123567777777777777777
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002100 576 INRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPS 618 (967)
Q Consensus 576 ~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 618 (967)
++...+.+=.+.....+|.++...|+-++|...|.++++.+++
T Consensus 149 L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 149 LDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 7665433224555667788888888888888888888877644
No 269
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.017 Score=60.18 Aligned_cols=160 Identities=14% Similarity=0.038 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhH
Q 002100 554 YPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLV 632 (967)
Q Consensus 554 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 632 (967)
..-+..+.-....|++.+|...|..++...| +.++...++.+|...|+.+.|...+.. .|.....-.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~~~~-------- 202 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQDKA-------- 202 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----CcccchhhH--------
Confidence 3445667778899999999999999999999 899999999999999999998876654 333222210
Q ss_pred hhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--
Q 002100 633 ETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS-- 710 (967)
Q Consensus 633 ~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~-- 710 (967)
+.....++++..+....++ +..+.+.+..+|++..+.+.++..+...|++++|...+-..++.+-.
T Consensus 203 ---------~~~l~a~i~ll~qaa~~~~---~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~ 270 (304)
T COG3118 203 ---------AHGLQAQIELLEQAAATPE---IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE 270 (304)
T ss_pred ---------HHHHHHHHHHHHHHhcCCC---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 0011123344444455555 77888889999999999999999999999999999998888876543
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 711 EHEKLVYEGWILYDTGHREEALAKAEE 737 (967)
Q Consensus 711 ~~~a~~~lg~~~~~~g~~~eA~~~~~~ 737 (967)
+..+...+-.++...|.-+.+...|.+
T Consensus 271 d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 271 DGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred CcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 445566666666666655555555444
No 270
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.16 E-value=0.034 Score=61.15 Aligned_cols=166 Identities=16% Similarity=0.070 Sum_probs=120.8
Q ss_pred HHHHHHhHHHHHhcccHHHHHHHHHHHhcc------CcHHHHHHHHHHHHH---hCCHHHHHHHHHHH-HHHccCCHHHH
Q 002100 786 GQALNNLGSVYVDCEKLDLAADCYMNALNI------KHTRAHQGLARVYHL---KNQRKAAYDEMTKL-IEKARNNASAY 855 (967)
Q Consensus 786 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~------~~~~a~~~la~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~~ 855 (967)
+....++-..|....+|+.=++..+..-.+ +...+.+.+|-++.+ .|+.++|+..+..+ ....+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 355667777788999999888888776653 233466667777777 89999999999884 44555677877
Q ss_pred HHHHc-c------------CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHH--------h----
Q 002100 856 EKRSE-Y------------CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAI--------A---- 910 (967)
Q Consensus 856 ~~~~~-~------------~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal--------~---- 910 (967)
...|. | ...++|+..|.++.+++| +.+.=.|++.++.-.|...+....+.+.. +
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 77772 1 347899999999999995 56667788888887776555544333332 1
Q ss_pred -cCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHH
Q 002100 911 -FKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTL 952 (967)
Q Consensus 911 -~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l 952 (967)
...+.+.+-.++.+....||+++|.+.+++++.+.|...+.-
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~ 342 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE 342 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence 122244666688889999999999999999999998765543
No 271
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.13 E-value=0.00085 Score=49.61 Aligned_cols=43 Identities=19% Similarity=0.054 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHH
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGW 720 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~ 720 (967)
+..++.+|..|.++|++++|++.|+++++.+|++++++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3567888999999999999999999999999999999888875
No 272
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.10 E-value=0.024 Score=61.19 Aligned_cols=140 Identities=10% Similarity=0.004 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH-cCChHHHHHHHHHHHhcccchHHHHHHHHHhhhc
Q 002100 680 LRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYD-TGHREEALAKAEESISIQRSFEAFFLKAYALADS 758 (967)
Q Consensus 680 ~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~ 758 (967)
+|........+.+..+.|...|++|++..+.....|...|.+.+. .++.+.|.+.|+.+++..|...
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~------------ 70 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP------------ 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH------------
Confidence 455566777778889999999999997777788999999999777 5666669999999998888665
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc-CcH----HHHHHHHHHHHHhCC
Q 002100 759 SLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI-KHT----RAHQGLARVYHLKNQ 833 (967)
Q Consensus 759 ~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~-~~~----~a~~~la~~~~~~g~ 833 (967)
..|......+...++.+.|...|++++.. ... ..|......-...|+
T Consensus 71 ----------------------------~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd 122 (280)
T PF05843_consen 71 ----------------------------DFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD 122 (280)
T ss_dssp ----------------------------HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-
T ss_pred ----------------------------HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC
Confidence 55666667778889999999999999992 222 378888888899999
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHH
Q 002100 834 RKAAYDEMTKLIEKARNNASAYEKRS 859 (967)
Q Consensus 834 ~~~A~~~~~~al~~~p~~~~~~~~~~ 859 (967)
.+...+..+++.+..|+.........
T Consensus 123 l~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 123 LESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999998665554444
No 273
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.08 E-value=0.0009 Score=46.27 Aligned_cols=32 Identities=22% Similarity=0.133 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 002100 917 LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNH 948 (967)
Q Consensus 917 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~ 948 (967)
+++.+|.+|..+|++++|+..|++|++++|++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 56667777777777777777777777777654
No 274
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.06 E-value=0.0011 Score=45.67 Aligned_cols=33 Identities=24% Similarity=0.194 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 002100 916 QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNH 948 (967)
Q Consensus 916 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~ 948 (967)
.+++.+|.++..+|++++|++.|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777777777777777777777777777765
No 275
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.05 E-value=0.0011 Score=45.75 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLTLDPSY 619 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 619 (967)
.+|+.+|.+|..+|++++|+..|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467778888888888888888888888887764
No 276
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.047 Score=57.04 Aligned_cols=150 Identities=15% Similarity=0.052 Sum_probs=102.5
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhCc--hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHH--HHHhhcC--C
Q 002100 461 HQLGVVMLEREEYKDAQNWFKAAVEAGH--IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMY--QERSLYC--S 534 (967)
Q Consensus 461 ~~lG~~~~~~g~y~~A~~~f~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~--~~~~~y~--~ 534 (967)
+..+.-....|++.+|...|..++...+ ..+..++++++...|+.+.|..++..+-.......+.- ....... .
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 3455667778899999999999998865 56778889999999999888888887655444332222 1111110 0
Q ss_pred hHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC---ChhHHHHHHHHHHHhcCHHHHHHHHH
Q 002100 535 GKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV---SPDCLELRAWISIALEDYDGALRDVR 610 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~ 610 (967)
.---+..+++.+..+|++..+-+.+|..+...|++++|++.+-..+..+- +..+...+-.++...|.-+.+...|+
T Consensus 218 ~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 218 ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 01113567777888999999999999999999999999999888887765 44455555555555554433433333
No 277
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.02 E-value=0.006 Score=55.51 Aligned_cols=83 Identities=20% Similarity=0.224 Sum_probs=72.4
Q ss_pred chHHHHHHHHHHhCC---CHHHHHHHHHHHHh-cCCCh--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 002100 882 TYPYRYRAAVLMDDH---KEAEAIAELSRAIA-FKPDL--QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELY 955 (967)
Q Consensus 882 ~~~~~~la~~~~~~g---~~~eAi~~~~kal~-~~p~~--~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~ 955 (967)
....+++|+++.+.. +..+.+..++..++ -.|+. +.++.+|..+.++++|++++++++..|+..|+|.++.++-
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 566788999998874 56788999999997 45552 4888899999999999999999999999999999999999
Q ss_pred HHHHhhhhh
Q 002100 956 DKATERVNE 964 (967)
Q Consensus 956 ~r~~~~~~~ 964 (967)
+.+++++++
T Consensus 112 ~~ied~itk 120 (149)
T KOG3364|consen 112 ETIEDKITK 120 (149)
T ss_pred HHHHHHHhh
Confidence 999998864
No 278
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0031 Score=65.96 Aligned_cols=103 Identities=16% Similarity=0.128 Sum_probs=89.5
Q ss_pred ccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCC----CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHH
Q 002100 518 DYTPVGWMYQERSLYCSGKEKMMDLNTATELDPT----LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELR 592 (967)
Q Consensus 518 ~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~l 592 (967)
.|...|+-|++-.+| ..|+..|.+.|+..-. ++..|.++|.+.+..|+|..|+....+++.++| +..+++.-
T Consensus 83 n~KeeGN~~fK~Kry---k~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRY---KDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHhHHHHHhhhH---HHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 445568888888888 9999999999987433 346789999999999999999999999999999 89999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 593 AWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 593 a~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
|.+++.++.+++|...++..+..+.+...+.
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~ 190 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDEAKKAI 190 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 9999999999999999999988876655444
No 279
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.99 E-value=0.81 Score=50.32 Aligned_cols=439 Identities=13% Similarity=0.079 Sum_probs=235.7
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHH--HHHHhcCChHHHHHHHHHHHhccCc-
Q 002100 445 RLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVA--RTKFKRGHKYSAYKLMNSLISDYTP- 521 (967)
Q Consensus 445 ~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la--~~~~~~g~~~~A~~~l~~~i~~~~~- 521 (967)
++.+.++++|.+...|++|-..+-.++.+++-.+.|++...--|....++.- .-.....++...+.++.+-+....+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 6778888999999999999999999999999999999988876643333311 1112234555555666555542222
Q ss_pred chhH----HHHHhh-cC------ChHHHHHHHHHhHhhCCCCchhHHHHHHHHH---------hcCcHHHHHHHHHHHhc
Q 002100 522 VGWM----YQERSL-YC------SGKEKMMDLNTATELDPTLSYPYKYRAILLV---------EENKLAAAITEINRIIG 581 (967)
Q Consensus 522 ~g~~----~~~~~~-y~------~~~~A~~~~~~al~l~P~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~ 581 (967)
.-|+ |..+.. .. ..-+|-+..-..+-.+|.....|...+..+. ++.+.+.-...|.+++.
T Consensus 110 dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~ 189 (660)
T COG5107 110 DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ 189 (660)
T ss_pred hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc
Confidence 1222 111110 00 1123333333334457777777766665442 34455666777888876
Q ss_pred cCC-ChhH-HHHHHHHHH-------------HhcCHHHHHHHHHHHHHh-------CCCchHHhhhhhhhhhHhhhHHHh
Q 002100 582 FKV-SPDC-LELRAWISI-------------ALEDYDGALRDVRALLTL-------DPSYMMFYGQLHGDNLVETLQPLV 639 (967)
Q Consensus 582 ~~p-~~~~-~~~la~~~~-------------~~g~~~~A~~~~~~al~l-------~p~~~~~~~~~~~~~~~~~l~~~~ 639 (967)
.-- +.+- |...-..-. ..--|-.|...|++...+ +|.+...+.++
T Consensus 190 tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~------------- 256 (660)
T COG5107 190 TPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKA------------- 256 (660)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccc-------------
Confidence 433 3321 111111111 111244556666665544 23222222110
Q ss_pred hchhhHhhHHHHHhhhccccc---------cchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 002100 640 QQWSQADCWMQLYDRWSSVDD---------IGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS 710 (967)
Q Consensus 640 ~~~~~A~~~~~l~~~~~~~d~---------~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~ 710 (967)
.+.... .||.. ..|...+. ...--.+.+++.-.|-.+..|+.-...+...++-+.|+...++++...|.
T Consensus 257 ~r~s~S-~WlNw-IkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps 334 (660)
T COG5107 257 ARTSDS-NWLNW-IKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS 334 (660)
T ss_pred cccccc-hhhhH-hhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc
Confidence 000000 12211 11111110 01133466788888888999999999999999999999999999988888
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCC---chHHHHHHHHHHhcCCCCCCchHH
Q 002100 711 EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPE---SSAYVIQLLEEALRCPSDGLRKGQ 787 (967)
Q Consensus 711 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~---~~~~a~~~le~~~~~~~~~~~~~~ 787 (967)
..+.++..|....+-++-..+|++.++ .....|...++..... ......+++-.-.. ...-
T Consensus 335 ---L~~~lse~yel~nd~e~v~~~fdk~~q-------~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~------k~t~ 398 (660)
T COG5107 335 ---LTMFLSEYYELVNDEEAVYGCFDKCTQ-------DLKRKYSMGESESASKVDNNFEYSKELLLKRIN------KLTF 398 (660)
T ss_pred ---hheeHHHHHhhcccHHHHhhhHHHHHH-------HHHHHHhhhhhhhhccccCCccccHHHHHHHHh------hhhh
Confidence 445566666666666666666776652 1222222221111000 01111111100000 1112
Q ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhccC--cHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHH----c
Q 002100 788 ALNNLGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLAR-VYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS----E 860 (967)
Q Consensus 788 a~~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~----~ 860 (967)
++.-+-..-....-.+.|...|.++-+.+ ...++..-|. -|..+|++..|...|.-.+...|+.+...+..- .
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 33322233334455778888888887733 2223333333 366789999999999999998888665433332 2
Q ss_pred cCChHHHHHHHHHhhccCCCC--chHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 861 YCDRDMAKSDLSMATQLDPMR--TYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 861 ~~~~~~A~~~l~~al~l~p~~--~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
.++-+.|...|+++++.-.+. ..+|..+-.--..-|+...++..=++..+.-|+
T Consensus 479 inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 479 INDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred hCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 377788888888776532222 223333333333346766666666666666665
No 280
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.99 E-value=1.4 Score=52.95 Aligned_cols=270 Identities=12% Similarity=0.029 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCc-hhHHHH---HHHHHHhcCChHHHHHHHHH----HHhccCcc----
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH-IYSLVG---VARTKFKRGHKYSAYKLMNS----LISDYTPV---- 522 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~-~~a~~~---la~~~~~~g~~~~A~~~l~~----~i~~~~~~---- 522 (967)
+...-++.-+.-+...|...+|++. |+..+. ..+..- .+.-....++...-+...+. ++...|.+
T Consensus 345 ~~~~lH~~Aa~w~~~~g~~~eAI~h---AlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~ 421 (894)
T COG2909 345 RLKELHRAAAEWFAEHGLPSEAIDH---ALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQ 421 (894)
T ss_pred chhHHHHHHHHHHHhCCChHHHHHH---HHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHH
Confidence 3344566666667778888888876 444432 211111 11112333333322222222 22233332
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCC---------CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C-----hh
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPT---------LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S-----PD 587 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~-----~~ 587 (967)
+|......+| .+|...+.++...-|. .+..--.+|.+....|+.++|++..+.++..-| + ..
T Consensus 422 aW~~~s~~r~---~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 422 AWLLASQHRL---AEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHccCh---HHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 3444444455 7777777766654332 123345578888999999999999999998777 2 45
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHH
Q 002100 588 CLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVV 667 (967)
Q Consensus 588 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~ 667 (967)
++...|.+..-.|++++|......+.+....+...+..+-+....+.+....|+-..++ . ...-....
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~----~--------~~~~~~~~ 566 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAE----Q--------EKAFNLIR 566 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHH----H--------HHHHHHHH
Confidence 78888999999999999999999988884444333322223344555555555322221 0 00001223
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCchhH---HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 668 HHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNY----STSEHE---KLVYEGWILYDTGHREEALAKAEESIS 740 (967)
Q Consensus 668 ~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~----~p~~~~---a~~~lg~~~~~~g~~~eA~~~~~~al~ 740 (967)
.+-+...|........++.++...-+++.+.....+.++. .|.... +++.++.+++..|+.++|...+.+...
T Consensus 567 ~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 567 EQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444445554444444555554444466666666555543 233222 234789999999999999999987765
Q ss_pred cc
Q 002100 741 IQ 742 (967)
Q Consensus 741 ~~ 742 (967)
+.
T Consensus 647 l~ 648 (894)
T COG2909 647 LL 648 (894)
T ss_pred Hh
Confidence 43
No 281
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.95 E-value=0.0017 Score=44.83 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 002100 586 PDCLELRAWISIALEDYDGALRDVRALLTLDPSY 619 (967)
Q Consensus 586 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 619 (967)
+.+++.+|.++..+|++++|++.|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567788888888888888888888888888864
No 282
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.86 E-value=0.12 Score=56.92 Aligned_cols=97 Identities=14% Similarity=0.172 Sum_probs=73.3
Q ss_pred hHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc----CCCChHHHHHHHHHHHH---hcCHHHHHHHHHH
Q 002100 631 LVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN----DPGKSLLRFRQSLLLLR---LNSQKAAMRSLRL 703 (967)
Q Consensus 631 ~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~----~p~~~~~~~~~g~~~~~---~g~~~~A~~~l~~ 703 (967)
.+-+.|...++|+.- +..++.+-.. -+..+.+.+..|.++.+ .|+.++|+..+..
T Consensus 146 ~lllSyRdiqdydam------------------I~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~ 207 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAM------------------IKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLP 207 (374)
T ss_pred HHHHHhhhhhhHHHH------------------HHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHH
Confidence 344567777777665 4444444433 34567788889999999 9999999999998
Q ss_pred -HHhcCCchhHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcccch
Q 002100 704 -ARNYSTSEHEKLVYEGWILYDT---------GHREEALAKAEESISIQRSF 745 (967)
Q Consensus 704 -al~~~p~~~~a~~~lg~~~~~~---------g~~~eA~~~~~~al~~~p~~ 745 (967)
.....+.+++.+...|.+|.+. ...++|+..|.++.+++|+.
T Consensus 208 ~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 208 VLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 5566777899999999998643 34789999999999999843
No 283
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.021 Score=60.08 Aligned_cols=87 Identities=21% Similarity=0.203 Sum_probs=76.2
Q ss_pred chhHHHHHHHHHhcCcHHHHHHHHHHHhccC---C--ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhh
Q 002100 553 SYPYKYRAILLVEENKLAAAITEINRIIGFK---V--SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLH 627 (967)
Q Consensus 553 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 627 (967)
+..|..-|.-|+..++|..|+..|.+.|+.. | +...|.++|.+.+.+|+|..|+.++.+++.++|.+..++
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~---- 156 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAY---- 156 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhh----
Confidence 4557778999999999999999999999864 3 566899999999999999999999999999999999999
Q ss_pred hhhhHhhhHHHhhchhhH
Q 002100 628 GDNLVETLQPLVQQWSQA 645 (967)
Q Consensus 628 ~~~~~~~l~~~~~~~~~A 645 (967)
+.-+.+...++++..|
T Consensus 157 --~R~Akc~~eLe~~~~a 172 (390)
T KOG0551|consen 157 --IRGAKCLLELERFAEA 172 (390)
T ss_pred --hhhhHHHHHHHHHHHH
Confidence 4446777888887777
No 284
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=96.80 E-value=0.0025 Score=56.95 Aligned_cols=66 Identities=11% Similarity=0.137 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHHhhhhh--------hcCCchhHhhhhccchHHHHHHhhcchHHHHHHHHHHhccCc
Q 002100 362 AVMLIEYGLEEAAYLLVAACLQVLLRELP--------CSMQNPNVMRIFCSAEARERLAMVGHASFVLYYFLSQIGMEE 432 (967)
Q Consensus 362 ~~~~~~~A~~~~~~~L~~~c~~~i~~~~~--------~~l~~~~~~~ll~s~~~~~r~~~~~~e~~~l~~~l~~l~~~~ 432 (967)
|+.++.+|..|+++.|.+.|.+||.+||. ..++...+..++.++++. +.++..++.+++.|+..+.
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~-----v~~E~~v~~av~~W~~~~~ 74 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLN-----VPSEEEVFEAVLRWVKHDP 74 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCC-----CCCHHHHHHHHHHHHHCCH
Confidence 45688889999999999999999999988 345566777788888876 6678899999999999764
No 285
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.75 E-value=0.0027 Score=66.86 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=75.7
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHH
Q 002100 464 GVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLN 543 (967)
Q Consensus 464 G~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~ 543 (967)
+.-.+..|++++|++.|..++.++|..+..+.- .+.++.++.+. ..|+.++.
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~k-------------------------r~sv~lkl~kp---~~airD~d 172 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAK-------------------------RASVFLKLKKP---NAAIRDCD 172 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhccc-------------------------ccceeeeccCC---chhhhhhh
Confidence 344556777888888888888877765544422 25566666655 78888888
Q ss_pred HhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHH
Q 002100 544 TATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDG 604 (967)
Q Consensus 544 ~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~ 604 (967)
.|++++|+.+..|..++.+...+|+|++|..++..+.+++-+..+-..+-.+.-+.+..++
T Consensus 173 ~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e 233 (377)
T KOG1308|consen 173 FAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEE 233 (377)
T ss_pred hhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhh
Confidence 8888888888888888888888888888888888887776544333333333333333333
No 286
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.74 E-value=0.84 Score=54.72 Aligned_cols=209 Identities=18% Similarity=0.064 Sum_probs=133.4
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHH
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS---------EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAF 748 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~---------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 748 (967)
|.+....+.......++.+|...+.++...-+. ..+.....|.+....|++++|++..+.++..-|...
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~-- 492 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA-- 492 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc--
Confidence 445566777788888888888888777654333 123344567777788999999999998887666332
Q ss_pred HHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH----H----H
Q 002100 749 FLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT----R----A 820 (967)
Q Consensus 749 ~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~----~----a 820 (967)
......++..+|.+..-.|++++|..+...+.+.... . +
T Consensus 493 ---------------------------------~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~ 539 (894)
T COG2909 493 ---------------------------------YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWS 539 (894)
T ss_pred ---------------------------------chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 0122246677888888899999999888888774222 1 4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHH
Q 002100 821 HQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAE 900 (967)
Q Consensus 821 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e 900 (967)
....+.+...+|+...| ...++... ...+-+...|-.......++.++...-+++.
T Consensus 540 ~~~~s~il~~qGq~~~a--~~~~~~~~----------------------~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~ 595 (894)
T COG2909 540 LLQQSEILEAQGQVARA--EQEKAFNL----------------------IREQHLEQKPRHEFLVRIRAQLLRAWLRLDL 595 (894)
T ss_pred HHHHHHHHHHhhHHHHH--HHHHHHHH----------------------HHHHHhhhcccchhHHHHHHHHHHHHHHHhh
Confidence 44567777777832222 22211110 0122233345555555556655555555777
Q ss_pred HHHHHHHHHhcC----CCh--H--HHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 901 AIAELSRAIAFK----PDL--Q--LLHLRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 901 Ai~~~~kal~~~----p~~--~--~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
+.....+.++.. |.+ . .+..++.++...||.++|...+.+...+-
T Consensus 596 ~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 596 AEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred hhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 766666666543 332 1 44588999999999999999988876554
No 287
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.33 Score=49.69 Aligned_cols=174 Identities=11% Similarity=0.150 Sum_probs=119.7
Q ss_pred hcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh
Q 002100 599 LEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS 678 (967)
Q Consensus 599 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~ 678 (967)
...-..|+.....++.++|.+...+ +.+-.+...++..-..+ +..+..+++.+|++-
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW------~yRr~iL~~l~~dL~~E-----------------l~~l~eI~e~npKNY 112 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVW------QYRRVILRHLMSDLNKE-----------------LEYLDEIIEDNPKNY 112 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHH------HHHHHHHHHhHHHHHHH-----------------HHHHHHHHHhCccch
Confidence 3455668888888999999998888 33334444433222221 888999999999999
Q ss_pred HHHHHHHHHHHHhcCHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH-Hhh
Q 002100 679 LLRFRQSLLLLRLNSQK-AAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAY-ALA 756 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~-~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~-~la 756 (967)
.+|..+-.+.-..|++. .-+...+.++..+..+..+|...-++...-+.++.-+++..+.++.+-.+...+...| .+.
T Consensus 113 QvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~ 192 (318)
T KOG0530|consen 113 QVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVIT 192 (318)
T ss_pred hHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEE
Confidence 99988888888888888 7888889999999999999999999999999999999999999987763332222222 222
Q ss_pred hc--CCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHh
Q 002100 757 DS--SLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVD 798 (967)
Q Consensus 757 ~~--~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~ 798 (967)
.+ ..+....+..++...+.+.. .|....+|+.|.-++..
T Consensus 193 ~~~~~~~~~~le~El~yt~~~I~~---vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 193 NTKGVISKAELERELNYTKDKILL---VPNNESAWNYLKGLLEL 233 (318)
T ss_pred eccCCccHHHHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHh
Confidence 21 11212333444444444443 34444677777666654
No 288
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.35 Score=49.52 Aligned_cols=225 Identities=12% Similarity=0.028 Sum_probs=150.8
Q ss_pred hcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHH
Q 002100 691 LNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTG-HREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVI 769 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~ 769 (967)
...-..|++..+.++.++|.+..+|...-.++..++ +..+-+.++.+.++-+|.+-
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNY----------------------- 112 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNY----------------------- 112 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccch-----------------------
Confidence 445567777888888888888888877777666554 45566677777776666443
Q ss_pred HHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHH-HHHHHHHHHhccCcHH--HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002100 770 QLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLD-LAADCYMNALNIKHTR--AHQGLARVYHLKNQRKAAYDEMTKLIE 846 (967)
Q Consensus 770 ~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~-~A~~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~A~~~~~~al~ 846 (967)
+.|...-.+....|++. .-++..+.++..+... +|...-.+...-+.++.-+.+....++
T Consensus 113 -----------------QvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle 175 (318)
T KOG0530|consen 113 -----------------QVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLE 175 (318)
T ss_pred -----------------hHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66666666666777776 6677777787755443 788888888888889999999999999
Q ss_pred HccCCHHHHHHHHcc----------CChHHHHHHHHHhhccCCCCchHHHHHHHHHHh-CC--CHHHHHHHHHHHHhcCC
Q 002100 847 KARNNASAYEKRSEY----------CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMD-DH--KEAEAIAELSRAIAFKP 913 (967)
Q Consensus 847 ~~p~~~~~~~~~~~~----------~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~-~g--~~~eAi~~~~kal~~~p 913 (967)
.+--|-++|+.|--+ -..+.-+.+....+.+.|++..+|.++..++.. .| .+.+-.......+...|
T Consensus 176 ~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~ 255 (318)
T KOG0530|consen 176 EDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLP 255 (318)
T ss_pred HhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccC
Confidence 998888888887622 124556677788899999999999999988886 44 23334444444432222
Q ss_pred C--hHHHHHHHHHH------HHcCChH---HHHHHHHHHH-hcCCCchhHHHHH
Q 002100 914 D--LQLLHLRAAFH------DSMGDHL---HTQRDCEAAL-CLDPNHTDTLELY 955 (967)
Q Consensus 914 ~--~~~~~~~a~~~------~~~g~~~---~A~~~~~~al-~~~P~~~~~l~l~ 955 (967)
. +..+--+..+| .+.+.-+ +|...|+..- +.+|-....+...
T Consensus 256 ~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~nyW~~~ 309 (318)
T KOG0530|consen 256 KRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRKNYWRHK 309 (318)
T ss_pred CCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 2 22222233333 2333444 5666676654 7777666655543
No 289
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.73 E-value=0.37 Score=57.33 Aligned_cols=273 Identities=16% Similarity=0.072 Sum_probs=165.8
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHH-----hcCHHHHHHHHHHHHhc-----CCchhHHHHHHHHHHHHcC-----C
Q 002100 663 SLAVVHHMLANDPGKSLLRFRQSLLLLR-----LNSQKAAMRSLRLARNY-----STSEHEKLVYEGWILYDTG-----H 727 (967)
Q Consensus 663 al~~~~~~l~~~p~~~~~~~~~g~~~~~-----~g~~~~A~~~l~~al~~-----~p~~~~a~~~lg~~~~~~g-----~ 727 (967)
+...++.+-+. .+......+|.+|.. ..+.+.|+..|+.+.+. .-.++.+.+.+|.+|.+-. +
T Consensus 231 a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d 308 (552)
T KOG1550|consen 231 AFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKID 308 (552)
T ss_pred HHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcccc
Confidence 35555554433 445666677777765 36899999999988761 1114567888999998743 6
Q ss_pred hHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc----ccHH
Q 002100 728 REEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC----EKLD 803 (967)
Q Consensus 728 ~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~----g~~~ 803 (967)
++.|+.+|.++.+....+..+++...-.... ......++...+..+.+. ....+.++++.+|..- .+..
T Consensus 309 ~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~--~~~d~~~A~~yy~~Aa~~-----G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 309 YEKALKLYTKAAELGNPDAQYLLGVLYETGT--KERDYRRAFEYYSLAAKA-----GHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHcCC--ccccHHHHHHHHHHHHHc-----CChHHHHHHHHHHHhCCCcCCCHH
Confidence 7889999999987776554333332221111 123344556665555433 2225666666665432 4666
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHccC----CHHHHHHHHc-c-------CChHHHHHH
Q 002100 804 LAADCYMNALNIKHTRAHQGLARVYHLK-NQRKAAYDEMTKLIEKARN----NASAYEKRSE-Y-------CDRDMAKSD 870 (967)
Q Consensus 804 ~A~~~~~~Al~~~~~~a~~~la~~~~~~-g~~~~A~~~~~~al~~~p~----~~~~~~~~~~-~-------~~~~~A~~~ 870 (967)
.|..+|.++.+.++..+...++..+..- +.+..+.-.+....+..-. ++..+..... . .+.+.+...
T Consensus 382 ~A~~~~k~aA~~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGNPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSL 461 (552)
T ss_pred HHHHHHHHHHHccChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHH
Confidence 7777777777766666555555554433 5555555544433332211 1112222210 1 244555555
Q ss_pred HHHhhccCCCCchHHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc---CChHHHHHHHHHHHh
Q 002100 871 LSMATQLDPMRTYPYRYRAAVLMDD----HKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSM---GDHLHTQRDCEAALC 943 (967)
Q Consensus 871 l~~al~l~p~~~~~~~~la~~~~~~----g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~ 943 (967)
+.++.. ..+..+...+|.+|..- .+++.|...|.++-... ....+++|..++.- .+...|.++|.++.+
T Consensus 462 ~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 462 YSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 555443 34556677777777664 45999999999998877 67888899888753 227899999999988
Q ss_pred cCCCc
Q 002100 944 LDPNH 948 (967)
Q Consensus 944 ~~P~~ 948 (967)
.+...
T Consensus 538 ~~~~~ 542 (552)
T KOG1550|consen 538 EDSRA 542 (552)
T ss_pred cCchh
Confidence 76654
No 290
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.69 E-value=0.59 Score=52.35 Aligned_cols=145 Identities=18% Similarity=0.089 Sum_probs=91.6
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH---
Q 002100 674 DPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS----EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE--- 746 (967)
Q Consensus 674 ~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~--- 746 (967)
.......+...+.+..+.|.++.|...+.++....+. .+...+..+.++...|+..+|+..++..+.......
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 4455678889999999999999999999999886522 456788889999999999999999998886222110
Q ss_pred ---HHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc------ccHHHHHHHHHHHhccCc
Q 002100 747 ---AFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC------EKLDLAADCYMNALNIKH 817 (967)
Q Consensus 747 ---~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~------g~~~~A~~~~~~Al~~~~ 817 (967)
....... .. ....... ...........+.++..+|...... ++.++++..|.++++..+
T Consensus 222 ~~~~~~~~~~--~~-~~~~~~~---------~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 289 (352)
T PF02259_consen 222 ISNAELKSGL--LE-SLEVISS---------TNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP 289 (352)
T ss_pred ccHHHHhhcc--cc-ccccccc---------cchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh
Confidence 0000000 00 0000000 0000001123346677777776666 778888888888888655
Q ss_pred HH--HHHHHHHHHHH
Q 002100 818 TR--AHQGLARVYHL 830 (967)
Q Consensus 818 ~~--a~~~la~~~~~ 830 (967)
.. ++..+|..+..
T Consensus 290 ~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 290 SWEKAWHSWALFNDK 304 (352)
T ss_pred hHHHHHHHHHHHHHH
Confidence 43 66666665544
No 291
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.68 E-value=0.29 Score=53.35 Aligned_cols=157 Identities=18% Similarity=0.014 Sum_probs=109.2
Q ss_pred HHHHhHHHHHhc----ccHHHHHHHHHHHhccCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHccCCH-HHHHHH
Q 002100 788 ALNNLGSVYVDC----EKLDLAADCYMNALNIKHTRAHQGLARVYHL----KNQRKAAYDEMTKLIEKARNNA-SAYEKR 858 (967)
Q Consensus 788 a~~~lg~~~~~~----g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~-~~~~~~ 858 (967)
+...++.+|... .+..+|..+|+.+.+.++..+.+.||.+|.. ..+..+|..+|.++.+..-..+ .+...+
T Consensus 75 a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l 154 (292)
T COG0790 75 ALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRL 154 (292)
T ss_pred HHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 444444444332 3567788888877777777777778877776 4477788888887777644332 223333
Q ss_pred Hc-c--C--------ChHHHHHHHHHhhccCCCCchHHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 002100 859 SE-Y--C--------DRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDD----HKEAEAIAELSRAIAFKPDLQLLHLRAA 923 (967)
Q Consensus 859 ~~-~--~--------~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~----g~~~eAi~~~~kal~~~p~~~~~~~~a~ 923 (967)
+. + + +...|...|.++.... ++.+...+|.+|..- .++++|..+|.++-+... ....+.++
T Consensus 155 ~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-~~a~~~~~- 230 (292)
T COG0790 155 GLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-GAACYNLG- 230 (292)
T ss_pred HHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHH-
Confidence 31 1 2 3347888888877665 677888889887653 589999999999998887 66777778
Q ss_pred HHHHcC---------------ChHHHHHHHHHHHhcCCCc
Q 002100 924 FHDSMG---------------DHLHTQRDCEAALCLDPNH 948 (967)
Q Consensus 924 ~~~~~g---------------~~~~A~~~~~~al~~~P~~ 948 (967)
++...| +...|...+.++-...+..
T Consensus 231 ~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 231 LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 666555 8889999999888766543
No 292
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.64 E-value=0.061 Score=62.41 Aligned_cols=114 Identities=14% Similarity=0.051 Sum_probs=92.0
Q ss_pred chHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 662 GSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE----HEKLVYEGWILYDTGHREEALAKAEE 737 (967)
Q Consensus 662 ~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~----~~a~~~lg~~~~~~g~~~eA~~~~~~ 737 (967)
.+...+....+..|+.....+..|.++...|+.++|++.|++++....+- .-.++.+++++..+.+|++|...+.+
T Consensus 251 ~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 251 EAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 35777888889999999999999999999999999999999988544332 34577899999999999999999999
Q ss_pred HHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccH-------HHHHHHHH
Q 002100 738 SISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKL-------DLAADCYM 810 (967)
Q Consensus 738 al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~-------~~A~~~~~ 810 (967)
..+.+.- .++...+..|.++...++. ++|.+.|.
T Consensus 331 L~~~s~W---------------------------------------Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~ 371 (468)
T PF10300_consen 331 LLKESKW---------------------------------------SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFR 371 (468)
T ss_pred HHhcccc---------------------------------------HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHH
Confidence 8865542 2234566678888888888 77777777
Q ss_pred HHhc
Q 002100 811 NALN 814 (967)
Q Consensus 811 ~Al~ 814 (967)
++-.
T Consensus 372 ~vp~ 375 (468)
T PF10300_consen 372 KVPK 375 (468)
T ss_pred HHHH
Confidence 7654
No 293
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.52 E-value=0.01 Score=53.38 Aligned_cols=82 Identities=11% Similarity=0.167 Sum_probs=59.8
Q ss_pred cEEEEE-cCeEEEehhHHHhccCHHHHHhhcCCCCCC-ccceEEeccCCCCHHHHHHHHHhHcCCCC-----------C-
Q 002100 257 DMSFCI-GNDEIRCVRYKIASLSRPFRTMLYGGFIES-RREKVNFSQNGISVEAMRAAEEFSRTKML-----------D- 322 (967)
Q Consensus 257 Dv~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~-~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~-----------~- 322 (967)
.|+|+. +|.+|.+.+.+. ..|..++.|+.+.-.+. ....|.|+. |+..+|+.+++|++--.- +
T Consensus 3 ~v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~--v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~ 79 (104)
T smart00512 3 YIKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPN--VTSKILSKVIEYCEHHVDDPPSVADKDDIPT 79 (104)
T ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCC--cCHHHHHHHHHHHHHcccCCCCccccccccH
Confidence 356654 899999999977 69999999997643222 225788866 999999999999974321 1
Q ss_pred ------CCCHHHHHHHHHHhchhCh
Q 002100 323 ------SFDPRLVLELLSFANRFCC 341 (967)
Q Consensus 323 ------~~~~~~~~~ll~~A~~~~~ 341 (967)
.++.+.+.+|+.+|++++|
T Consensus 80 wD~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 80 WDAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1455667777777777664
No 294
>PRK10941 hypothetical protein; Provisional
Probab=96.30 E-value=0.028 Score=59.46 Aligned_cols=82 Identities=12% Similarity=0.060 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 884 PYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 884 ~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
.+.++-.+|++.++++.|+.+.+..+.+.|+.. -+.-+|.+|.++|.+..|..+++..++..|+++.+.-+..++.+-.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 345677899999999999999999999999954 5666999999999999999999999999999999888777777655
Q ss_pred hhc
Q 002100 963 NEQ 965 (967)
Q Consensus 963 ~~~ 965 (967)
.+.
T Consensus 263 ~~~ 265 (269)
T PRK10941 263 QKQ 265 (269)
T ss_pred hcC
Confidence 443
No 295
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.28 E-value=1.4 Score=47.40 Aligned_cols=160 Identities=9% Similarity=-0.068 Sum_probs=91.6
Q ss_pred HhcCcHHHHHHHHHHHhccCC--C-------hhHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC----C---CchHHh-hh
Q 002100 564 VEENKLAAAITEINRIIGFKV--S-------PDCLELRAWISIALE-DYDGALRDVRALLTLD----P---SYMMFY-GQ 625 (967)
Q Consensus 564 ~~~g~~~~A~~~~~~al~~~p--~-------~~~~~~la~~~~~~g-~~~~A~~~~~~al~l~----p---~~~~~~-~~ 625 (967)
..+|+++.|...+.|+-...+ + ...++..|.-....+ +++.|...+++++++- + ..+... .+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 456778888888777755441 2 235566666677777 8888888888887762 1 111111 11
Q ss_pred hhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002100 626 LHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLAR 705 (967)
Q Consensus 626 ~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al 705 (967)
......++.++...+.++.. ..+...+..+....|+.+..+...-.++.+.++.+++.+.+.+.+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~---------------~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESV---------------EKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHHHcCCChHHH---------------HHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 11113333333333222222 234666666777778888888666666666889999999999888
Q ss_pred hcCCc---hhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 706 NYSTS---EHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 706 ~~~p~---~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
..-+. +.+........+.. .....|...+.+.+
T Consensus 149 ~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l 184 (278)
T PF08631_consen 149 RSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLL 184 (278)
T ss_pred HhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHH
Confidence 76541 12222222222222 33456666666655
No 296
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.27 E-value=0.0063 Score=41.91 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 002100 917 LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNH 948 (967)
Q Consensus 917 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~ 948 (967)
+++.+|.+|..+|++++|+..|+++++++|+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 56677777777777777777777777777743
No 297
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.22 E-value=2.3 Score=53.06 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=78.8
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCCc---hhHHHHHHHHHhc-------CcHHHHHHHHHHHhccCCChhHHHHH
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTLS---YPYKYRAILLVEE-------NKLAAAITEINRIIGFKVSPDCLELR 592 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~---~~~~~la~~~~~~-------g~~~~A~~~~~~al~~~p~~~~~~~l 592 (967)
+.++..-..| +.|+..|++.-.-.|... ++.+..|..+.++ ..+++|+..|++.-.-...|--|...
T Consensus 482 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (932)
T PRK13184 482 PDAFLAEKLY---DQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGK 558 (932)
T ss_pred cHHHHhhHHH---HHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhH
Confidence 4556666677 999999999988888765 4567777766553 25888999998875443378889999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 593 AWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 593 a~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
|.+|..+|+|++-++.|.-+++..|+++...
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 9999999999999999999999999988765
No 298
>PLN03138 Protein TOC75; Provisional
Probab=96.21 E-value=0.0042 Score=74.07 Aligned_cols=11 Identities=0% Similarity=0.051 Sum_probs=6.4
Q ss_pred ccEEEEE-cCeE
Q 002100 256 WDMSFCI-GNDE 266 (967)
Q Consensus 256 ~Dv~~~v-~~~~ 266 (967)
-+|+|.+ ++..
T Consensus 215 v~V~~~i~Eg~~ 226 (796)
T PLN03138 215 LGLTISFTESTW 226 (796)
T ss_pred EEEEEEEEeCCc
Confidence 4677766 3443
No 299
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.21 E-value=0.49 Score=51.48 Aligned_cols=176 Identities=19% Similarity=0.090 Sum_probs=118.3
Q ss_pred HhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHc----CChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCch
Q 002100 690 RLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDT----GHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESS 765 (967)
Q Consensus 690 ~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~----g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~ 765 (967)
..+++..|...+..+-... +..+...++..|... .+..+|..+|..+.+..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g----------------------- 107 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG----------------------- 107 (292)
T ss_pred ccccHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc-----------------------
Confidence 4566777777777766522 225666677666543 35667777777544221
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHh----cccHHHHHHHHHHHhccCcHHH---HHHHHHHHHHhC------
Q 002100 766 AYVIQLLEEALRCPSDGLRKGQALNNLGSVYVD----CEKLDLAADCYMNALNIKHTRA---HQGLARVYHLKN------ 832 (967)
Q Consensus 766 ~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~~~~~~a---~~~la~~~~~~g------ 832 (967)
...+.+++|.+|.. ..++.+|..+|++|.+.++..+ ...++..|..-.
T Consensus 108 -------------------~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 108 -------------------LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred -------------------cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 12466677777766 4488899999999988887776 888888777642
Q ss_pred -CHHHHHHHHHHHHHHccCCHHHHHHHHc-c-------CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCC-------
Q 002100 833 -QRKAAYDEMTKLIEKARNNASAYEKRSE-Y-------CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDH------- 896 (967)
Q Consensus 833 -~~~~A~~~~~~al~~~p~~~~~~~~~~~-~-------~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g------- 896 (967)
+...|...|.++-+.. +..+...+|. | .+..+|...|.++.+... ....+.++ ++...|
T Consensus 169 ~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~ 243 (292)
T COG0790 169 YDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAA 243 (292)
T ss_pred HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhh
Confidence 2336888888777665 4555555552 1 578899999999988776 77777788 666555
Q ss_pred --------CHHHHHHHHHHHHhcCCC
Q 002100 897 --------KEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 897 --------~~~eAi~~~~kal~~~p~ 914 (967)
+...|...+.++....+.
T Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 244 FLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred hcccccCCCHHHHHHHHHHHHHcCCh
Confidence 666777777777666554
No 300
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.17 E-value=3.7 Score=47.70 Aligned_cols=164 Identities=14% Similarity=0.122 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHH---
Q 002100 440 VMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLI--- 516 (967)
Q Consensus 440 ~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i--- 516 (967)
+.+.+++........+.+. +----|+|++|++.|-.+-..+- .. .++.+.|++...+.+++.--
T Consensus 724 ik~vkrl~~i~s~~~q~ae-------i~~~~g~feeaek~yld~drrDL---Ai---elr~klgDwfrV~qL~r~g~~d~ 790 (1189)
T KOG2041|consen 724 IKLVKRLRTIHSKEQQRAE-------ISAFYGEFEEAEKLYLDADRRDL---AI---ELRKKLGDWFRVYQLIRNGGSDD 790 (1189)
T ss_pred hhHHHHhhhhhhHHHHhHh-------HhhhhcchhHhhhhhhccchhhh---hH---HHHHhhhhHHHHHHHHHccCCCc
Confidence 3445555544444333333 23334889999998865543221 11 23445666666555555411
Q ss_pred ------hccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHH
Q 002100 517 ------SDYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCL 589 (967)
Q Consensus 517 ------~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 589 (967)
..+.+.|..+.++..| ++|.++|.+.-. ..+...+++...+|++-. .....-| +...+
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~W---e~A~~yY~~~~~--------~e~~~ecly~le~f~~LE----~la~~Lpe~s~ll 855 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEW---EEAAKYYSYCGD--------TENQIECLYRLELFGELE----VLARTLPEDSELL 855 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccc--------hHhHHHHHHHHHhhhhHH----HHHHhcCcccchH
Confidence 1344456666666666 777777776432 234566777776666543 3333345 67778
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhH
Q 002100 590 ELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQA 645 (967)
Q Consensus 590 ~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A 645 (967)
-.+|..+...|--++|.+.|.+-- .|. +. -.....+.||.+|
T Consensus 856 p~~a~mf~svGMC~qAV~a~Lr~s--~pk---aA---------v~tCv~LnQW~~a 897 (1189)
T KOG2041|consen 856 PVMADMFTSVGMCDQAVEAYLRRS--LPK---AA---------VHTCVELNQWGEA 897 (1189)
T ss_pred HHHHHHHHhhchHHHHHHHHHhcc--CcH---HH---------HHHHHHHHHHHHH
Confidence 888999999999999988875431 222 11 1235667788888
No 301
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.05 E-value=0.0078 Score=63.64 Aligned_cols=92 Identities=22% Similarity=0.263 Sum_probs=75.2
Q ss_pred CeEEEehhHHHhccCHHHHHhhcCCCCCC-ccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHHHHHHHHHHhchhChH
Q 002100 264 NDEIRCVRYKIASLSRPFRTMLYGGFIES-RREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLVLELLSFANRFCCE 342 (967)
Q Consensus 264 ~~~~~~hr~vLa~~S~~F~~~~~~~~~e~-~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~ll~~A~~~~~~ 342 (967)
.+.|.|.+-.|-..=.||+..+.....++ ..++|+|+- ..+..+|+=+++|+..... .+++.+|..||.-+++++++
T Consensus 13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisV-hCDv~iF~WLm~yv~~~~p-~l~~~NvvsIliSS~FL~M~ 90 (317)
T PF11822_consen 13 KRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISV-HCDVHIFEWLMRYVKGEPP-SLTPSNVVSILISSEFLQME 90 (317)
T ss_pred ceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEE-ecChhHHHHHHHHhhcCCC-cCCcCcEEEeEehhhhhccH
Confidence 45799999999999999999996522222 234566654 4899999999999999666 89999999999999999999
Q ss_pred HHHHHHHHHHHhhCC
Q 002100 343 ELKSACDSYLASMVS 357 (967)
Q Consensus 343 ~l~~~c~~~l~~~~~ 357 (967)
.|++.|..|+.++++
T Consensus 91 ~Lve~cl~y~~~~~~ 105 (317)
T PF11822_consen 91 SLVEECLQYCHDHMS 105 (317)
T ss_pred HHHHHHHHHHHHhHH
Confidence 999999998866654
No 302
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=3.9 Score=46.57 Aligned_cols=127 Identities=19% Similarity=0.113 Sum_probs=87.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCcchhHH--------HHHhh-----cCChHHHHHHHHHhHhhCCCCchhHHHHHHHH
Q 002100 497 RTKFKRGHKYSAYKLMNSLISDYTPVGWMY--------QERSL-----YCSGKEKMMDLNTATELDPTLSYPYKYRAILL 563 (967)
Q Consensus 497 ~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~--------~~~~~-----y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 563 (967)
.+.-..|...++...+-++....+..+.+. +.... +.+.+...+.+.......|+++.-.+..|..+
T Consensus 198 ~vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l 277 (546)
T KOG3783|consen 198 SVVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRYPKGALWLLMEARIL 277 (546)
T ss_pred HHHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCccHHHHHHHHH
Confidence 344455666666666665554333322111 11111 11556666667777788999999999999999
Q ss_pred HhcCcHHHHHHHHHHHhccCC---ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 564 VEENKLAAAITEINRIIGFKV---SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 564 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
...|+.+.|+..++..+...- ..-+++.+|+++.-+.+|..|...+..+.+.+.-..-.|
T Consensus 278 ~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y 340 (546)
T KOG3783|consen 278 SIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFY 340 (546)
T ss_pred HHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHH
Confidence 999998889999998888211 355889999999999999999999998887755444444
No 303
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.00 E-value=0.011 Score=40.66 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLTLDPS 618 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 618 (967)
.+++.+|.+|..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46778888888888888888888888888775
No 304
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=95.95 E-value=0.019 Score=61.91 Aligned_cols=8 Identities=25% Similarity=0.077 Sum_probs=4.2
Q ss_pred cchhHHHH
Q 002100 142 KSGVYLEQ 149 (967)
Q Consensus 142 ~~~~~~~~ 149 (967)
...+||-|
T Consensus 195 ~emiCLPQ 202 (641)
T KOG3915|consen 195 CELICLPQ 202 (641)
T ss_pred ceEEecHH
Confidence 34455555
No 305
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=95.94 E-value=0.021 Score=61.85 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=69.0
Q ss_pred EEEEEcCeEEEehhHHHhccC--HHHHHhhcCCCCCCccce--EEeccCCCCHHHHHHHHHhHcCCCCCCCCHHHHHHHH
Q 002100 258 MSFCIGNDEIRCVRYKIASLS--RPFRTMLYGGFIESRREK--VNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLVLELL 333 (967)
Q Consensus 258 v~~~v~~~~~~~hr~vLa~~S--~~F~~~~~~~~~e~~~~~--i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~ll 333 (967)
|.|-|||+.|.-.+.-|+... .+|-++|.+.+.-.+... |-|. =+|+.|..+|.|+.||++ +.+......++
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFID---RDPdlFaviLn~LRTg~L-~~~g~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFID---RDPDLFAVILNLLRTGDL-DASGVFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEec---CCchHHHHHHHHHhcCCC-CCccCchhhhh
Confidence 668999999999999997766 599999998887555443 6665 599999999999999999 56555555555
Q ss_pred H-HhchhChHHHHH
Q 002100 334 S-FANRFCCEELKS 346 (967)
Q Consensus 334 ~-~A~~~~~~~l~~ 346 (967)
. =|.+|++..|.+
T Consensus 89 hdEA~fYGl~~llr 102 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhhcCcHHHHH
Confidence 5 899999998875
No 306
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=95.92 E-value=0.021 Score=56.02 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=76.4
Q ss_pred cccEEEEEcCeEEEehhHHHhccCH--HHHHhhcCC---CCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHHHH
Q 002100 255 DWDMSFCIGNDEIRCVRYKIASLSR--PFRTMLYGG---FIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLV 329 (967)
Q Consensus 255 ~~Dv~~~v~~~~~~~hr~vLa~~S~--~F~~~~~~~---~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~ 329 (967)
.+-|.+.|||++|.--+--|..|=| .+.+||.+. ..|+.+.-+-|. -||.-|+-+|.|+..|.++..+.-++
T Consensus 8 ~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lID---Rsp~yFepIlNyLr~Gq~~~~s~i~~ 84 (302)
T KOG1665|consen 8 SSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLID---RSPKYFEPILNYLRDGQIPSLSDIDC 84 (302)
T ss_pred hhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEc---cCchhhHHHHHHHhcCceeecCCccH
Confidence 3568899999999988777777765 688999873 234455566665 59999999999999999976677789
Q ss_pred HHHHHHhchhChHHHHHHHHH
Q 002100 330 LELLSFANRFCCEELKSACDS 350 (967)
Q Consensus 330 ~~ll~~A~~~~~~~l~~~c~~ 350 (967)
.++|..|++|+|-.|++.-+.
T Consensus 85 lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 85 LGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHHHhhHHhhHhHHhHHhh
Confidence 999999999999999988776
No 307
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.80 E-value=0.22 Score=47.83 Aligned_cols=113 Identities=19% Similarity=0.102 Sum_probs=76.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHH
Q 002100 591 LRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHM 670 (967)
Q Consensus 591 ~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~ 670 (967)
..|......++.+.++..+++++.+.......-. .. ..|-... ...+...
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~----------~~---~~W~~~~-----------------r~~l~~~ 60 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDL----------DD---EEWVEPE-----------------RERLREL 60 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGG----------TT---STTHHHH-----------------HHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCC----------Cc---cHHHHHH-----------------HHHHHHH
Confidence 3455566778999999999999988654322210 00 1111110 1111111
Q ss_pred HhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 671 LANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 671 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
...+...++..+...|++++|+..+++++..+|.+-.++..+-.+|...|+..+|++.|++..
T Consensus 61 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 61 ------YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp ------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 123455677888999999999999999999999999999999999999999999999998875
No 308
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.78 E-value=0.19 Score=48.30 Aligned_cols=61 Identities=16% Similarity=0.099 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 554 YPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 554 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
.+...++..+...|++++|+..+++++..+| +..++..+-.+|...|+..+|++.|++...
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3456678889999999999999999999999 899999999999999999999999988754
No 309
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.67 E-value=0.016 Score=39.38 Aligned_cols=32 Identities=16% Similarity=0.009 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 002100 917 LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNH 948 (967)
Q Consensus 917 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~ 948 (967)
+++.+|.++..+|++++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56777778888888888888888888777764
No 310
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=95.66 E-value=0.053 Score=43.38 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=43.8
Q ss_pred EEEEE-cCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHc
Q 002100 258 MSFCI-GNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSR 317 (967)
Q Consensus 258 v~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y 317 (967)
|+|+- +|+.|.+.+.++ ..|..++.||.+...+.. .|.++. |+..+++.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl~~--v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPLPN--VSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEETT--S-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc--ccccCc--cCHHHHHHHHHHHH
Confidence 55654 899999998776 699999999986433333 789976 99999999999986
No 311
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.60 E-value=0.02 Score=40.11 Aligned_cols=28 Identities=21% Similarity=0.534 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 002100 459 AFHQLGVVMLEREEYKDAQNWFKAAVEA 486 (967)
Q Consensus 459 a~~~lG~~~~~~g~y~~A~~~f~~al~~ 486 (967)
++..||.+|...|+|++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4778999999999999999999998765
No 312
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.57 E-value=0.12 Score=44.87 Aligned_cols=77 Identities=14% Similarity=0.030 Sum_probs=58.4
Q ss_pred HHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC---ChhHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002100 537 EKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV---SPDCLELRAWISIALEDYDGALRDVRALL 613 (967)
Q Consensus 537 ~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al 613 (967)
..+..++++++.+|++..+.+.+|..++..|++++|++.+-.++..++ +..+...+-.++..+|.-+.-...|++-|
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999998 35566666677777777655555555433
No 313
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.52 E-value=4.7 Score=53.66 Aligned_cols=67 Identities=15% Similarity=0.002 Sum_probs=58.8
Q ss_pred CCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 878 DPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 878 ~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
+......|...|.+..+.|+++-|-.++-+|.+.. .++++..+|..+++.|+-..|+..+++.++++
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 34457889999999999999999999999998877 45688899999999999999999999999765
No 314
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.11 Score=50.03 Aligned_cols=92 Identities=11% Similarity=0.145 Sum_probs=69.7
Q ss_pred cCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCC--------------------
Q 002100 263 GNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLD-------------------- 322 (967)
Q Consensus 263 ~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~-------------------- 322 (967)
+|+.|.+-..++ ..|..+++++...=.......|.|+. |...+|..|++|++.-+-+
T Consensus 13 DG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~n--V~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLPN--VTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHHHH-HHhHHHHHHHHHcCCCccCCccccCc--cCHHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 788888887665 77888888886421111115688864 9999999999999974321
Q ss_pred ----CCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCC
Q 002100 323 ----SFDPRLVLELLSFANRFCCEELKSACDSYLASMVS 357 (967)
Q Consensus 323 ----~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~ 357 (967)
.++..++.+|+.+|+++++++|.+.|.+.++..+.
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mik 128 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIK 128 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHc
Confidence 23445788999999999999999999988888874
No 315
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.44 E-value=0.018 Score=60.91 Aligned_cols=87 Identities=11% Similarity=0.046 Sum_probs=67.3
Q ss_pred CcccEEEEE-cCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHHHHHHH
Q 002100 254 EDWDMSFCI-GNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLVLEL 332 (967)
Q Consensus 254 ~~~Dv~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~l 332 (967)
...|++|.+ +|+.|-|||..|++||.+|..-+..-+ .+..+|+-.. +-+.+|..+++|+|-..- .+-++.-..|
T Consensus 148 ~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~--v~~~~f~~flk~lyl~~n-a~~~~qynal 222 (516)
T KOG0511|consen 148 CCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHR--VILSAFSPFLKQLYLNTN-AEWKDQYNAL 222 (516)
T ss_pred cccchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhh--hhHhhhhHHHHHHHHhhh-hhhhhHHHHH
Confidence 347999987 788999999999999998865444322 1334564444 788999999999998754 5566667899
Q ss_pred HHHhchhChHHHH
Q 002100 333 LSFANRFCCEELK 345 (967)
Q Consensus 333 l~~A~~~~~~~l~ 345 (967)
+.+..+|.++.|.
T Consensus 223 lsi~~kF~~e~l~ 235 (516)
T KOG0511|consen 223 LSIEVKFSKEKLS 235 (516)
T ss_pred HhhhhhccHHHhH
Confidence 9999999998775
No 316
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.41 E-value=0.17 Score=45.16 Aligned_cols=106 Identities=16% Similarity=0.174 Sum_probs=67.3
Q ss_pred HHHHHHH--HHHHhhcCChHHHHHHHHHHHHh----------Cc----hhHHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 002100 457 QLAFHQL--GVVMLEREEYKDAQNWFKAAVEA----------GH----IYSLVGVARTKFKRGHKYSAYKLMNSLISDYT 520 (967)
Q Consensus 457 a~a~~~l--G~~~~~~g~y~~A~~~f~~al~~----------~~----~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~ 520 (967)
+.+|..| |.-.+..|-|++|...+.+|+.. ++ ...+.+|+..+...|++++++.....++..+.
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 3444444 44456778999999999999987 12 34567788888888888877765555554444
Q ss_pred cchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhc
Q 002100 521 PVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIG 581 (967)
Q Consensus 521 ~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 581 (967)
..|...+.-+.. -+.+-+.+|..+...|+.++|+..|+.+-+
T Consensus 87 RRGEL~qdeGkl-------------------WIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 87 RRGELHQDEGKL-------------------WIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HH--TTSTHHHH-------------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hccccccccchh-------------------HHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 444333332210 123457788888889999999988887754
No 317
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.39 E-value=0.028 Score=38.18 Aligned_cols=32 Identities=31% Similarity=0.337 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLTLDPS 618 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 618 (967)
++++.+|.++...|++++|+..|+++++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 35677777777777777777777777777776
No 318
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.38 E-value=4.4 Score=43.66 Aligned_cols=227 Identities=11% Similarity=0.046 Sum_probs=126.4
Q ss_pred HHHhcCHHHHHHHHHHHHhcC----Cch----hHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcccchHHHHHHHHHhhhc
Q 002100 688 LLRLNSQKAAMRSLRLARNYS----TSE----HEKLVYEGWILYDTG-HREEALAKAEESISIQRSFEAFFLKAYALADS 758 (967)
Q Consensus 688 ~~~~g~~~~A~~~l~~al~~~----p~~----~~a~~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~ 758 (967)
..++|+++.|...+.++-... |+. ...+++.|......+ ++++|..+++++.++-.... ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~----------~~ 72 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPG----------KM 72 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhh----------hc
Confidence 356789999999998876543 443 346778888888999 99999999999986632100 00
Q ss_pred CCCCCchHHHHHHHHHHhcCCCC-CCchHHHHHHhHHHHHhcccHHH---HHHHHHHHhc--cCcHHHHHHHHHHHHHhC
Q 002100 759 SLNPESSAYVIQLLEEALRCPSD-GLRKGQALNNLGSVYVDCEKLDL---AADCYMNALN--IKHTRAHQGLARVYHLKN 832 (967)
Q Consensus 759 ~~~~~~~~~a~~~le~~~~~~~~-~~~~~~a~~~lg~~~~~~g~~~~---A~~~~~~Al~--~~~~~a~~~la~~~~~~g 832 (967)
.....+ .......+..++.+|...+.++. |....+.+.. ++++..+..--.+..+.+
T Consensus 73 -----------------~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~ 135 (278)
T PF08631_consen 73 -----------------DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSF 135 (278)
T ss_pred -----------------cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccC
Confidence 000000 01233577788888888777653 3333333433 333443323233333378
Q ss_pred CHHHHHHHHHHHHHHcc-CCHHHHHHHH---cc--CChHHHHHHHHHhhc--cCCCCchHHHHHHH---HHHhCC--CHH
Q 002100 833 QRKAAYDEMTKLIEKAR-NNASAYEKRS---EY--CDRDMAKSDLSMATQ--LDPMRTYPYRYRAA---VLMDDH--KEA 899 (967)
Q Consensus 833 ~~~~A~~~~~~al~~~p-~~~~~~~~~~---~~--~~~~~A~~~l~~al~--l~p~~~~~~~~la~---~~~~~g--~~~ 899 (967)
+.+++.+.+.+++...+ .....-.... .+ .....|...+...+. .+|.... +..... +++..+ +..
T Consensus 136 ~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~ 214 (278)
T PF08631_consen 136 DEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLS 214 (278)
T ss_pred ChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCcccc
Confidence 88888888888887654 1111111111 11 344556666655543 2333221 332222 222222 222
Q ss_pred HH--HHHHHHHHh----c-----CCCh-----HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 900 EA--IAELSRAIA----F-----KPDL-----QLLHLRAAFHDSMGDHLHTQRDCEAAL 942 (967)
Q Consensus 900 eA--i~~~~kal~----~-----~p~~-----~~~~~~a~~~~~~g~~~~A~~~~~~al 942 (967)
.. ++..+..++ . .+.. ..+.+.|.-.++.++|++|..+|+-++
T Consensus 215 ~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 215 SSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred chhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 333322222 1 1111 145668999999999999999999876
No 319
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.35 E-value=5.8 Score=43.95 Aligned_cols=120 Identities=17% Similarity=0.051 Sum_probs=84.1
Q ss_pred HhCCHHHHHHHHHHHHHHccCCHHHHHHHH--c---cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHH
Q 002100 830 LKNQRKAAYDEMTKLIEKARNNASAYEKRS--E---YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAE 904 (967)
Q Consensus 830 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~--~---~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~ 904 (967)
+..-.+.|...|.++-+..--...+|..-+ + .+++.-|-..|+-.+...|+++..-...-..+...++-+.|...
T Consensus 409 r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraL 488 (660)
T COG5107 409 RKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARAL 488 (660)
T ss_pred HHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHH
Confidence 334456666777666554322223333322 2 28888899999999999998877666666677888999999999
Q ss_pred HHHHHhcCCCh---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch
Q 002100 905 LSRAIAFKPDL---QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHT 949 (967)
Q Consensus 905 ~~kal~~~p~~---~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~ 949 (967)
|+++++.-.+. .+|...-..-..-|+...+...=++..++.|+..
T Consensus 489 Fetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen 536 (660)
T COG5107 489 FETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN 536 (660)
T ss_pred HHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence 99888654443 2555555666667888888888888888888764
No 320
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.34 E-value=6 Score=44.06 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=48.8
Q ss_pred HHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 559 RAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 559 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
-|..++.+|+|.++.-.-.=..++.|++.++.++|.+.....+|++|...+...
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 356788999999999999999999999999999999999999999999987653
No 321
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=95.30 E-value=0.045 Score=47.14 Aligned_cols=9 Identities=22% Similarity=0.128 Sum_probs=3.9
Q ss_pred HHhhhhccC
Q 002100 12 TMRSLKIID 20 (967)
Q Consensus 12 ~~~~~~~~~ 20 (967)
+++||--.+
T Consensus 35 FF~Tl~~p~ 43 (91)
T PF10961_consen 35 FFQTLFSPD 43 (91)
T ss_pred HHHHHhCCC
Confidence 344444443
No 322
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.20 E-value=0.075 Score=40.72 Aligned_cols=37 Identities=32% Similarity=0.389 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
++++.+|..++++|+|++|....+.+|+.+|+|..+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 5678888888999999999999999999999988777
No 323
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.18 E-value=1.1 Score=50.18 Aligned_cols=78 Identities=17% Similarity=0.014 Sum_probs=61.5
Q ss_pred HhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhc---------c-----CC-------------C---hhHHHHHHHH
Q 002100 546 TELDPTLSYPYKYRAILLVEENKLAAAITEINRIIG---------F-----KV-------------S---PDCLELRAWI 595 (967)
Q Consensus 546 l~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---------~-----~p-------------~---~~~~~~la~~ 595 (967)
++.+|....++..++.++..+|+.+.|.+.+++|+- + ++ | -.+++.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 456789999999999999999999999888888852 1 11 1 1255666777
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCC-chHHh
Q 002100 596 SIALEDYDGALRDVRALLTLDPS-YMMFY 623 (967)
Q Consensus 596 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~ 623 (967)
..+.|-+..|++..+-++.++|. ++...
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ 141 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGV 141 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchh
Confidence 88899999999999999999999 55443
No 324
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.99 E-value=0.059 Score=55.84 Aligned_cols=62 Identities=21% Similarity=0.307 Sum_probs=36.7
Q ss_pred HhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHH
Q 002100 893 MDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLEL 954 (967)
Q Consensus 893 ~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l 954 (967)
.+.|+.++|...|+.|+++.|+ ++++...|.+....++.-+|-.+|-+||.++|.|.+++-.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 3456666666666666666665 3455556666666666666666666666666666555443
No 325
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.82 E-value=13 Score=46.76 Aligned_cols=136 Identities=21% Similarity=0.120 Sum_probs=79.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHh
Q 002100 593 AWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLA 672 (967)
Q Consensus 593 a~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~ 672 (967)
-..+++.+.|++|+..|+++-...|.-..-+..+ +..|..... +|. ..-...+-..|+..|++.-
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~- 546 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQ---FRLGITLLE-----KAS------EQGDPRDFTQALSEFSYLH- 546 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHH---HHhhHHHHH-----HHH------hcCChHHHHHHHHHHHHhc-
Confidence 3445566677777777777777666554443211 222221111 110 0000000112355555543
Q ss_pred cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHc-----CChHHHHHHHHHHHhccc
Q 002100 673 NDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDT-----GHREEALAKAEESISIQR 743 (967)
Q Consensus 673 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~-----g~~~eA~~~~~~al~~~p 743 (967)
..|.-|.-|...+.+|.++|++++-+++|..|++..|+.|+.-...-.+-+++ .+...|....--++..-|
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (932)
T PRK13184 547 GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAP 622 (932)
T ss_pred CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 35777889999999999999999999999999999999886543333222222 233455566666666666
No 326
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.76 E-value=0.045 Score=38.27 Aligned_cols=25 Identities=24% Similarity=0.137 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 918 LHLRAAFHDSMGDHLHTQRDCEAAL 942 (967)
Q Consensus 918 ~~~~a~~~~~~g~~~~A~~~~~~al 942 (967)
+..+|.+|..+|++++|+..|+++|
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666644
No 327
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.72 E-value=0.84 Score=50.33 Aligned_cols=83 Identities=12% Similarity=-0.080 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcC------------HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHH
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNS------------QKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEA 731 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~------------~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA 731 (967)
...+++.++.+|.+...|..+....-..-. .+..+..|++|++.+|++...+..+-.+..+..+.++.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 455677788888888888776655444322 34556688888888888888877777777777888888
Q ss_pred HHHHHHHHhcccchH
Q 002100 732 LAKAEESISIQRSFE 746 (967)
Q Consensus 732 ~~~~~~al~~~p~~~ 746 (967)
.+.+++++..+|+..
T Consensus 85 ~~~we~~l~~~~~~~ 99 (321)
T PF08424_consen 85 AKKWEELLFKNPGSP 99 (321)
T ss_pred HHHHHHHHHHCCCCh
Confidence 888888888888655
No 328
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.64 E-value=0.46 Score=47.29 Aligned_cols=81 Identities=19% Similarity=0.173 Sum_probs=63.9
Q ss_pred HHhhhccccccchHHHHHHHHhcC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHc
Q 002100 651 LYDRWSSVDDIGSLAVVHHMLAND-PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS----EHEKLVYEGWILYDT 725 (967)
Q Consensus 651 l~~~~~~~d~~~al~~~~~~l~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~----~~~a~~~lg~~~~~~ 725 (967)
+|.+|+...|..|+..|-++-... -+.+.+.+.+|..|. ..+.++|+..+-+++++.+. +++.+..++.+++.+
T Consensus 113 lYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 113 LYYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred HHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 466788877777777776654432 245778888888777 78999999999999998655 478999999999999
Q ss_pred CChHHHH
Q 002100 726 GHREEAL 732 (967)
Q Consensus 726 g~~~eA~ 732 (967)
|+++.|-
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 9999874
No 329
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.50 E-value=0.77 Score=41.10 Aligned_cols=101 Identities=17% Similarity=0.129 Sum_probs=66.5
Q ss_pred HHHHHhHH--HHHhcccHHHHHHHHHHHhccC----------cH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002100 787 QALNNLGS--VYVDCEKLDLAADCYMNALNIK----------HT----RAHQGLARVYHLKNQRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 787 ~a~~~lg~--~~~~~g~~~~A~~~~~~Al~~~----------~~----~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 850 (967)
.+|..|+. -.+..|-|++|...+++|++.. |. ..|..|+.++..+|+|++++..-.+++.
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~---- 83 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR---- 83 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH----
Confidence 45666544 4456688999999999998822 11 2688899999999999999888776664
Q ss_pred CHHHHHHHHccCChHHHHHHHHHhhccCCCCc----hHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002100 851 NASAYEKRSEYCDRDMAKSDLSMATQLDPMRT----YPYRYRAAVLMDDHKEAEAIAELSRAIA 910 (967)
Q Consensus 851 ~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~----~~~~~la~~~~~~g~~~eAi~~~~kal~ 910 (967)
+|++-=+++.+.. .+.+++|..+...|+.++|+..|+.+-+
T Consensus 84 -------------------YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 84 -------------------YFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp -------------------HHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -------------------HHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 2222223333322 2344677778888888888888887754
No 330
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.47 E-value=2.1 Score=47.16 Aligned_cols=86 Identities=13% Similarity=0.031 Sum_probs=62.7
Q ss_pred HHHHHHHhHhhCCCCchhHHHHHHHHHhcCc------------HHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHH
Q 002100 538 KMMDLNTATELDPTLSYPYKYRAILLVEENK------------LAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDG 604 (967)
Q Consensus 538 A~~~~~~al~l~P~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~ 604 (967)
-...|++.++.+|.+..+|..+....-..-. .+.-+..|++|++.+| +...+..+-.+..+..+.++
T Consensus 4 r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 4 RTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Confidence 3457888999999999999888865544422 3455667778887777 66666666666667777777
Q ss_pred HHHHHHHHHHhCCCchHHh
Q 002100 605 ALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 605 A~~~~~~al~l~p~~~~~~ 623 (967)
..+.+++++..+|++...|
T Consensus 84 l~~~we~~l~~~~~~~~LW 102 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPELW 102 (321)
T ss_pred HHHHHHHHHHHCCCChHHH
Confidence 7777888888877777776
No 331
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.45 E-value=0.22 Score=43.19 Aligned_cols=49 Identities=18% Similarity=0.111 Sum_probs=42.0
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 002100 867 AKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL 915 (967)
Q Consensus 867 A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~ 915 (967)
.+..++++++.+|++..+.+.+|..++..|++++|++.+-.+++.+++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4567888999999999999999999999999999999999999998874
No 332
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.44 E-value=0.56 Score=48.14 Aligned_cols=97 Identities=19% Similarity=0.297 Sum_probs=66.3
Q ss_pred hcCHHHHHHHHHHHHhc------CC-chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCC
Q 002100 691 LNSQKAAMRSLRLARNY------ST-SEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPE 763 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~------~p-~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~ 763 (967)
...+++|+..|..|+-. .| .-+..+..+||+|..+|+.+.....+++|+. .|..++.-.+.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~-------~y~~a~~~e~~----- 157 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALE-------FYEEAYENEDF----- 157 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH-------HHHHHHHhCcC-----
Confidence 45677777777766532 11 2255678899999999998888888888773 33333321111
Q ss_pred chHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc
Q 002100 764 SSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN 814 (967)
Q Consensus 764 ~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 814 (967)
+.........++.+|.++...|++++|+.+|.+++.
T Consensus 158 ---------------~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 158 ---------------PIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred ---------------CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 111223345788899999999999999999999998
No 333
>PLN03138 Protein TOC75; Provisional
Probab=94.40 E-value=0.025 Score=67.76 Aligned_cols=18 Identities=11% Similarity=-0.008 Sum_probs=8.7
Q ss_pred CcccccCCCcccHHHHHH
Q 002100 112 PQIEPCLKFVDFVETLAD 129 (967)
Q Consensus 112 p~~~~~~~~~~~~~~~~~ 129 (967)
+-+|+|=-|++.+-.|..
T Consensus 124 ~~~~~~~~~~~~~~~~~~ 141 (796)
T PLN03138 124 GDWDSHGLPVNITVPLSK 141 (796)
T ss_pred CCCccccCcccceEechh
Confidence 445555555554433333
No 334
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.35 E-value=0.012 Score=67.83 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=6.4
Q ss_pred hchhhHHHHHh
Q 002100 4 KMQQNFFTTMR 14 (967)
Q Consensus 4 ~~~~~~~~~~~ 14 (967)
|+.+||.+-+|
T Consensus 432 kt~~NI~~lik 442 (556)
T PF05918_consen 432 KTTNNILALIK 442 (556)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHhhHHHHHH
Confidence 56666665543
No 335
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.28 E-value=1.2 Score=42.76 Aligned_cols=50 Identities=14% Similarity=-0.020 Sum_probs=30.0
Q ss_pred cCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 002100 877 LDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHD 926 (967)
Q Consensus 877 l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~ 926 (967)
-+|-...+...||..-.+.|++.+|..+|.+...-...+....+++.+..
T Consensus 162 ~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRAq~ml 211 (221)
T COG4649 162 GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRAQIML 211 (221)
T ss_pred CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHHHHHH
Confidence 34555556666777777777777777777776653333444555555443
No 336
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.24 E-value=1.5 Score=49.09 Aligned_cols=146 Identities=14% Similarity=-0.004 Sum_probs=87.9
Q ss_pred HHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCC---------------------chHHhhhhhhhh
Q 002100 578 RIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTL-----DPS---------------------YMMFYGQLHGDN 630 (967)
Q Consensus 578 ~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l-----~p~---------------------~~~~~~~~~~~~ 630 (967)
..+...| ..+++..++.++..+|+++.|.+.++++|-. .|. |...+..+ +
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal---~ 107 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLAL---F 107 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHH---H
Confidence 3457789 8999999999999999999999999998743 111 11111100 1
Q ss_pred hHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCC-ChH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 002100 631 LVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPG-KSL-LRFRQSLLLLRLNSQKAAMRSLRLARNYS 708 (967)
Q Consensus 631 ~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~-~~~-~~~~~g~~~~~~g~~~~A~~~l~~al~~~ 708 (967)
.........|-|..| ++..+-.+.++|. ++. +.+.+=...++.++|+--+..++......
T Consensus 108 r~i~~L~~RG~~rTA------------------lE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~ 169 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTA------------------LEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKC 169 (360)
T ss_pred HHHHHHHhcCcHHHH------------------HHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhh
Confidence 112222223333333 7777777777777 554 33334444456666666666555544311
Q ss_pred C-----chhHHHHHHHHHHHHcCCh---------------HHHHHHHHHHHhcccc
Q 002100 709 T-----SEHEKLVYEGWILYDTGHR---------------EEALAKAEESISIQRS 744 (967)
Q Consensus 709 p-----~~~~a~~~lg~~~~~~g~~---------------~eA~~~~~~al~~~p~ 744 (967)
. .-|..-+..+.+++..++. ++|...+.+|+...|.
T Consensus 170 ~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 170 YRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 1 1123455666667777766 7777777777777773
No 337
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.19 E-value=0.94 Score=40.42 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=32.4
Q ss_pred HHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 571 AAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 571 ~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 615 (967)
.+++.|.++..+.| .+..++.+|.-+-....|++++.-.+++|..
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 35677777888887 6667777777766677777777777777654
No 338
>PRK10941 hypothetical protein; Provisional
Probab=94.15 E-value=0.28 Score=51.99 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
..++-.+|.+.++++.|+...+.++.+.| ++.-+.-+|.+|.++|.+..|..+++..++..|+++.+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 45666789999999999999999999999 898999999999999999999999999999999999887
No 339
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.05 E-value=19 Score=43.75 Aligned_cols=138 Identities=9% Similarity=-0.061 Sum_probs=84.2
Q ss_pred HHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCCh-H--HH-HH
Q 002100 796 YVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDR-D--MA-KS 869 (967)
Q Consensus 796 ~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~--~A-~~ 869 (967)
....++++.+...+...-. .......+.+|+++..+|+.++|...|+++.. +.+-........+|.. . .. ..
T Consensus 322 Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~~fYG~LAa~~Lg~~~~~~~~~~~ 399 (644)
T PRK11619 322 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QRGFYPMVAAQRLGEEYPLKIDKAP 399 (644)
T ss_pred HHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CCCcHHHHHHHHcCCCCCCCCCCCC
Confidence 3456677766666655322 22334788888888888999999999888744 2222111111122211 0 00 00
Q ss_pred HHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 870 DLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAA 941 (967)
Q Consensus 870 ~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~a 941 (967)
.-...+. ......++..+...|+..+|...+..++.. .++.....++.+....|.++.|+....++
T Consensus 400 ~~~~~~~-----~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 400 KPDSALT-----QGPEMARVRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred chhhhhc-----cChHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 0001111 123456788888999999999999888876 44556667788888889888887766544
No 340
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.04 E-value=0.78 Score=47.02 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=42.7
Q ss_pred hcCHHHHHHHHHHHHhcCCchh----HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 691 LNSQKAAMRSLRLARNYSTSEH----EKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~p~~~----~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
..++++|+..|++++++.++-. .++..+-.+++.+|++++-...|.+.+
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 4588999999999999988753 477788899999999999999999887
No 341
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.98 E-value=0.15 Score=53.04 Aligned_cols=66 Identities=14% Similarity=0.051 Sum_probs=56.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHH
Q 002100 825 ARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAA 890 (967)
Q Consensus 825 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~ 890 (967)
|.-..+.|+.++|...|..++.++|.+++++...|.+ ++.-+|-.+|-+|+.++|.+..++.+++.
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 3345678999999999999999999999999988864 67788899999999999999998888774
No 342
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.44 Score=42.65 Aligned_cols=97 Identities=16% Similarity=0.164 Sum_probs=70.0
Q ss_pred ccEEEE-EcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCC------------
Q 002100 256 WDMSFC-IGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLD------------ 322 (967)
Q Consensus 256 ~Dv~~~-v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~------------ 322 (967)
|-|.++ ++|+.|.+.+ .+|-||-..+.|+... ....+.++-++++..+|+.+++|+-..+-.
T Consensus 2 s~i~l~s~dge~F~vd~-~iAerSiLikN~l~d~----~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rk 76 (158)
T COG5201 2 SMIELESIDGEIFRVDE-NIAERSILIKNMLCDS----TACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRK 76 (158)
T ss_pred CceEEEecCCcEEEehH-HHHHHHHHHHHHhccc----cccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhc
Confidence 345554 5788888876 5678999999988632 222233444569999999999999643221
Q ss_pred ------------CCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCC
Q 002100 323 ------------SFDPRLVLELLSFANRFCCEELKSACDSYLASMVS 357 (967)
Q Consensus 323 ------------~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~ 357 (967)
.++.+++.++.-+|+++.++-|.+.|...++..+.
T Consensus 77 s~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 77 SKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred cCCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 22345678899999999999999999888888775
No 343
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.53 E-value=3 Score=42.95 Aligned_cols=115 Identities=11% Similarity=0.063 Sum_probs=68.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCc------------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Q 002100 683 RQSLLLLRLNSQKAAMRSLRLARNYSTS------------EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFL 750 (967)
Q Consensus 683 ~~g~~~~~~g~~~~A~~~l~~al~~~p~------------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 750 (967)
.+|.+|+..++|..-.+.+++.-..... -.+.|...-..|-.+.+-.+-...|++++.+....+
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP---- 225 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP---- 225 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC----
Confidence 5788888888888877777665433211 123344445566666666666677777775543211
Q ss_pred HHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHH-hHHHHHhcccHHHHHHHHHHHhc----cCcHH-----H
Q 002100 751 KAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNN-LGSVYVDCEKLDLAADCYMNALN----IKHTR-----A 820 (967)
Q Consensus 751 ~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~-lg~~~~~~g~~~~A~~~~~~Al~----~~~~~-----a 820 (967)
+|...-.... =|..+...|++++|-..|-+|.+ .+.++ -
T Consensus 226 -------------------------------HPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLK 274 (440)
T KOG1464|consen 226 -------------------------------HPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLK 274 (440)
T ss_pred -------------------------------chHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHH
Confidence 1111111111 25667888999999888888876 22221 4
Q ss_pred HHHHHHHHHHhC
Q 002100 821 HQGLARVYHLKN 832 (967)
Q Consensus 821 ~~~la~~~~~~g 832 (967)
+..||..+++.|
T Consensus 275 YLVLANMLmkS~ 286 (440)
T KOG1464|consen 275 YLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHcC
Confidence 666777777765
No 344
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.53 E-value=0.96 Score=46.42 Aligned_cols=95 Identities=19% Similarity=0.054 Sum_probs=62.9
Q ss_pred HhcccHHHHHHHHHHHhc------cCcH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHH
Q 002100 797 VDCEKLDLAADCYMNALN------IKHT---RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMA 867 (967)
Q Consensus 797 ~~~g~~~~A~~~~~~Al~------~~~~---~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A 867 (967)
.....+++|++.|.-|+- ..+. ..+..+|.+|..+|+.+.....+++|++.
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~-------------------- 147 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEF-------------------- 147 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH--------------------
Confidence 345567888888877765 1222 26788999999999987777777766653
Q ss_pred HHHHHHhhccCCC------CchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 868 KSDLSMATQLDPM------RTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 868 ~~~l~~al~l~p~------~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
|.++++.... .....+.+|.+..+.|++++|+.+|.+++.....
T Consensus 148 ---y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 148 ---YEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred ---HHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 4444433211 1345666777777777777777777777765433
No 345
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.43 E-value=0.24 Score=55.82 Aligned_cols=91 Identities=20% Similarity=0.151 Sum_probs=83.7
Q ss_pred ChHHHHHHHHHhHhhCCCCc-hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLS-YPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRA 611 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~ 611 (967)
+...|++++..|+...|... ....++|.+....+-.-.|-..+.+++.+.. .|-.++.+|+.|+.+.+.+.|++.+++
T Consensus 622 n~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~ 701 (886)
T KOG4507|consen 622 NSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQ 701 (886)
T ss_pred CcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHH
Confidence 77999999999999999754 4688999999999999999999999999988 788999999999999999999999999
Q ss_pred HHHhCCCchHHhh
Q 002100 612 LLTLDPSYMMFYG 624 (967)
Q Consensus 612 al~l~p~~~~~~~ 624 (967)
+++++|+++....
T Consensus 702 a~~~~~~~~~~~~ 714 (886)
T KOG4507|consen 702 ALKLTTKCPECEN 714 (886)
T ss_pred HHhcCCCChhhHH
Confidence 9999999988773
No 346
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.42 E-value=0.98 Score=40.30 Aligned_cols=105 Identities=15% Similarity=0.133 Sum_probs=63.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHH
Q 002100 824 LARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIA 903 (967)
Q Consensus 824 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~ 903 (967)
+|.-++..|++-+|++.++..+...+++...|..... +..-.++.|...+..+....+.+ .|++
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~-----QG~if~~lA~~ten~d~k~~yLl-----------~sve 65 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRL-----QGTIFYKLAKKTENPDVKFRYLL-----------GSVE 65 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHH-----HhHHHHHHHHhccCchHHHHHHH-----------HhHH
Confidence 4677888999999999999999988876644322211 11112233333332223332223 3667
Q ss_pred HHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 904 ELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEAALCL 944 (967)
Q Consensus 904 ~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~ 944 (967)
.|.++..+.|... .++.+|.-+....-|+++..-.+++|.+
T Consensus 66 ~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 66 CFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 7777777777743 5666666665566667777777776654
No 347
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.34 E-value=0.13 Score=33.80 Aligned_cols=31 Identities=32% Similarity=0.199 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002100 917 LLHLRAAFHDSMGDHLHTQRDCEAALCLDPN 947 (967)
Q Consensus 917 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~ 947 (967)
++..+|.++..++++++|...+++++.++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455666666666666666666666666554
No 348
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=14 Score=39.74 Aligned_cols=267 Identities=13% Similarity=0.063 Sum_probs=140.6
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcc--CC-C--------hhHHHHHHHHHHHhcCHHHHHHHHHHH---HHhCCCchHH
Q 002100 557 KYRAILLVEENKLAAAITEINRIIGF--KV-S--------PDCLELRAWISIALEDYDGALRDVRAL---LTLDPSYMMF 622 (967)
Q Consensus 557 ~~la~~~~~~g~~~~A~~~~~~al~~--~p-~--------~~~~~~la~~~~~~g~~~~A~~~~~~a---l~l~p~~~~~ 622 (967)
..++......+++++++..|..++.. .| + .+....++.++...|++++=....... +..-+.-..+
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 55666777778888888888888874 11 1 336777888888888877654433322 1111111111
Q ss_pred hhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccc--cchHHHHHHHHhcCCCC------hHHHHHHHHHHHHhcCH
Q 002100 623 YGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDD--IGSLAVVHHMLANDPGK------SLLRFRQSLLLLRLNSQ 694 (967)
Q Consensus 623 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~--~~al~~~~~~l~~~p~~------~~~~~~~g~~~~~~g~~ 694 (967)
. ..+.+ .+.....++ ..-+......++-.... ..+-.++..+|...++|
T Consensus 88 K------lvR~L-----------------vd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~Y 144 (411)
T KOG1463|consen 88 K------LVRSL-----------------VDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRY 144 (411)
T ss_pred H------HHHHH-----------------HHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHH
Confidence 0 00000 011100000 00122222222211110 01223567778888888
Q ss_pred HHHHHHHHHHHh----cC--CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHH
Q 002100 695 KAAMRSLRLARN----YS--TSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYV 768 (967)
Q Consensus 695 ~~A~~~l~~al~----~~--p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a 768 (967)
.+|+......+. .+ +.-.+.+.....+|+...+..+|...+..|-.....
T Consensus 145 teAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Ana------------------------ 200 (411)
T KOG1463|consen 145 TEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANA------------------------ 200 (411)
T ss_pred HHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcc------------------------
Confidence 888886655443 22 223456666777777777777777776655422110
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc----cC-cHH---HHHHHHHHHHHhCCHHHHHHH
Q 002100 769 IQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN----IK-HTR---AHQGLARVYHLKNQRKAAYDE 840 (967)
Q Consensus 769 ~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----~~-~~~---a~~~la~~~~~~g~~~~A~~~ 840 (967)
.-+++. ..+..=..=|..+....+|..|-.+|-+|++ .+ +.. ++..+-.+-...+..++--..
T Consensus 201 -------iYcpPq--lQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~l 271 (411)
T KOG1463|consen 201 -------IYCPPQ--LQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAAL 271 (411)
T ss_pred -------cccCHH--HHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 000000 0111222337777788999999999999998 22 233 333344444556666654444
Q ss_pred HH--HHHHHccCCHHHHHHHHc------cCChHHHHHHHHHhhccCC
Q 002100 841 MT--KLIEKARNNASAYEKRSE------YCDRDMAKSDLSMATQLDP 879 (967)
Q Consensus 841 ~~--~al~~~p~~~~~~~~~~~------~~~~~~A~~~l~~al~l~p 879 (967)
+. .+++....+.++....+. +.+|+.|+..|..-+..||
T Consensus 272 ls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 272 LSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 33 455544445555544442 2567778888877777665
No 349
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.14 E-value=0.58 Score=43.02 Aligned_cols=71 Identities=23% Similarity=0.242 Sum_probs=60.6
Q ss_pred chhHHHHHHHHHhcC---cHHHHHHHHHHHhc-cCC--ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 553 SYPYKYRAILLVEEN---KLAAAITEINRIIG-FKV--SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 553 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
....+++|.++.... +..+.+..++..++ ..| .-++.+.+|.-+++.++|+.++.+.+..++.+|+|..+.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 345677888887654 46688999999997 555 678999999999999999999999999999999998887
No 350
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.04 E-value=0.17 Score=33.31 Aligned_cols=31 Identities=35% Similarity=0.384 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002100 588 CLELRAWISIALEDYDGALRDVRALLTLDPS 618 (967)
Q Consensus 588 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 618 (967)
++..+|.++..++++++|+..++++++.+|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666665554
No 351
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.03 E-value=19 Score=40.78 Aligned_cols=87 Identities=10% Similarity=-0.091 Sum_probs=57.8
Q ss_pred CCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCchhHHHH
Q 002100 879 PMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSM----GDHLHTQRDCEAALCLDPNHTDTLEL 954 (967)
Q Consensus 879 p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~----g~~~~A~~~~~~al~~~P~~~~~l~l 954 (967)
|+....-...-..+.+.+-+.+|.+.|.+...+-|-.-.++ ++.+.+.. -+...+..+|+.|+.....+++++--
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~-r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~ 535 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLF-RKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMD 535 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHH-HHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 44444444455566777888899999988887776643333 33333322 24677888888888888888888877
Q ss_pred HHHHHhhhhhcC
Q 002100 955 YDKATERVNEQQ 966 (967)
Q Consensus 955 ~~r~~~~~~~~~ 966 (967)
|-+.+...+.++
T Consensus 536 y~~~e~~~g~~e 547 (568)
T KOG2396|consen 536 YMKEELPLGRPE 547 (568)
T ss_pred HHHhhccCCCcc
Confidence 777666554443
No 352
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.88 E-value=14 Score=38.68 Aligned_cols=51 Identities=24% Similarity=0.127 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHhccCC---------ChhHHHHHHHHHHHhcCHHHHHH
Q 002100 557 KYRAILLVEENKLAAAITEINRIIGFKV---------SPDCLELRAWISIALEDYDGALR 607 (967)
Q Consensus 557 ~~la~~~~~~g~~~~A~~~~~~al~~~p---------~~~~~~~la~~~~~~g~~~~A~~ 607 (967)
..+|.-..+.+++++|+..|.+++.... ...+...++.+|...|++..--+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 4567777888999999999999987622 23477888999999998765433
No 353
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.70 E-value=0.22 Score=49.84 Aligned_cols=61 Identities=16% Similarity=0.242 Sum_probs=39.3
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHH
Q 002100 892 LMDDHKEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTL 952 (967)
Q Consensus 892 ~~~~g~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l 952 (967)
..+.++.+.|.+.|++++++.|+. ..|+.+|....+.|+++.|.+.|++.++++|.+....
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ga 66 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGA 66 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccch
Confidence 344566666666667776666663 3666666666667777777777777777766655443
No 354
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=92.65 E-value=26 Score=41.21 Aligned_cols=194 Identities=9% Similarity=-0.055 Sum_probs=108.4
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchh
Q 002100 445 RLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGW 524 (967)
Q Consensus 445 ~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~ 524 (967)
...++++++|. ...|..++...+..-+++-|+..|-++-........-.|..++.+. ...+.
T Consensus 681 dA~qfiEdnPH-prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~-----------------~q~ae 742 (1189)
T KOG2041|consen 681 DAIQFIEDNPH-PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKE-----------------QQRAE 742 (1189)
T ss_pred HHHHHHhcCCc-hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHH-----------------HHhHh
Confidence 34455555554 3456777777777777788887776654332211111111111100 00011
Q ss_pred HHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC---ChhHHHHHHHHHHHhcC
Q 002100 525 MYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV---SPDCLELRAWISIALED 601 (967)
Q Consensus 525 ~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~ 601 (967)
+ .+-|+.+++|...|-.+-..+ .--..+...|+|-.-.+.++.--.-+. -.+++..+|..+..+..
T Consensus 743 i---~~~~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~ 811 (1189)
T KOG2041|consen 743 I---SAFYGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMME 811 (1189)
T ss_pred H---hhhhcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 1 123445577777665543321 112345667777777776655332222 35688999999999999
Q ss_pred HHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH
Q 002100 602 YDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR 681 (967)
Q Consensus 602 ~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~ 681 (967)
|++|.++|.+.-.. .....++..+++|+. ++.....-|++..+.
T Consensus 812 We~A~~yY~~~~~~--------------e~~~ecly~le~f~~----------------------LE~la~~Lpe~s~ll 855 (1189)
T KOG2041|consen 812 WEEAAKYYSYCGDT--------------ENQIECLYRLELFGE----------------------LEVLARTLPEDSELL 855 (1189)
T ss_pred HHHHHHHHHhccch--------------HhHHHHHHHHHhhhh----------------------HHHHHHhcCcccchH
Confidence 99999988764221 111233333333322 223334457777788
Q ss_pred HHHHHHHHHhcCHHHHHHHHHH
Q 002100 682 FRQSLLLLRLNSQKAAMRSLRL 703 (967)
Q Consensus 682 ~~~g~~~~~~g~~~~A~~~l~~ 703 (967)
-.+|..+...|.-++|...|-+
T Consensus 856 p~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 856 PVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHhhchHHHHHHHHHh
Confidence 8888888888888888876643
No 355
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=92.53 E-value=0.39 Score=41.46 Aligned_cols=14 Identities=29% Similarity=0.240 Sum_probs=7.7
Q ss_pred hHHHHHhhhhccCC
Q 002100 8 NFFTTMRSLKIIDG 21 (967)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (967)
-||.||=+-.....
T Consensus 34 lFF~Tl~~p~~~~~ 47 (91)
T PF10961_consen 34 LFFQTLFSPDSSRS 47 (91)
T ss_pred HHHHHHhCCCcccc
Confidence 35666655555554
No 356
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.38 E-value=7.7 Score=41.20 Aligned_cols=189 Identities=11% Similarity=-0.031 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCC
Q 002100 682 FRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLN 761 (967)
Q Consensus 682 ~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~ 761 (967)
+.+-+...+..+..+-++.-..+++++|+.+.+|..++.-- .--..+|.+.++++++..... +.+.-.+......
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~---yr~sqq~qh~~~~ 262 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETI---YRQSQQCQHQSPQ 262 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHH---HhhHHHHhhhccc
Confidence 34445556677788888888899999999998888876532 233557788888877543311 1000010000000
Q ss_pred CCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH----HHHHHHHHHHHhCCHHHH
Q 002100 762 PESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR----AHQGLARVYHLKNQRKAA 837 (967)
Q Consensus 762 ~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~----a~~~la~~~~~~g~~~~A 837 (967)
. +...+ .+..-.......++.+..++|+..+|++.|+...+.-+.. ++-+|-..+....-|...
T Consensus 263 ----~------da~~r--RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADv 330 (556)
T KOG3807|consen 263 ----H------EAQLR--RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADV 330 (556)
T ss_pred ----h------hhhhh--cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 0011112344567899999999999999999888744432 444444444443333222
Q ss_pred HHHHHHHHHH-ccCC--------------------HHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHH
Q 002100 838 YDEMTKLIEK-ARNN--------------------ASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRY 887 (967)
Q Consensus 838 ~~~~~~al~~-~p~~--------------------~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~ 887 (967)
...+.+.-++ .|.. ++.-..+|.-.--..|++.+.+|++.+|.-+..+..
T Consensus 331 qavLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE 401 (556)
T KOG3807|consen 331 QAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLE 401 (556)
T ss_pred HHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHH
Confidence 2222111111 0121 222222332223345777777888888776655443
No 357
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.23 E-value=14 Score=41.83 Aligned_cols=255 Identities=19% Similarity=0.173 Sum_probs=132.4
Q ss_pred ChHHHHHHHHHHHHhhCCChhhHHHHHHHHH-HhChHHHHHHHHHHHhhhhhhcCCchhHhhhhccchHHHHHHhhcchH
Q 002100 340 CCEELKSACDSYLASMVSDIEDAVMLIEYGL-EEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCSAEARERLAMVGHAS 418 (967)
Q Consensus 340 ~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~-~~~~~~L~~~c~~~i~~~~~~~l~~~~~~~ll~s~~~~~r~~~~~~e~ 418 (967)
-++.++..|.++|+..-+ +++.++.-+. .+.-..|-+.|+--+..-|....... +++-+|..-+. ++...
T Consensus 29 ~~~~~~~ic~~hl~~~k~---si~~lyisg~~~~s~~~l~d~~l~~~~~~f~~n~k~~-~veh~c~~~l~-----~~e~k 99 (711)
T COG1747 29 ILDVLKGICDEHLAHSKN---SIIALYISGIISLSKQLLDDSCLVTLLTIFGDNHKNQ-IVEHLCTRVLE-----YGESK 99 (711)
T ss_pred HHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhhccccchHHHHHHHHhccchHHH-HHHHHHHHHHH-----hcchH
Confidence 356789999999998744 5555555444 34444566778766666665554433 34444433333 55555
Q ss_pred HHHHHHHHHhccCcccccchHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHh-CchhHHHHHHH
Q 002100 419 FVLYYFLSQIGMEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEA-GHIYSLVGVAR 497 (967)
Q Consensus 419 ~~l~~~l~~l~~~~~~~~~~~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~-~~~~a~~~la~ 497 (967)
-.++..+.-... + .......+.+++.+..-++ +.--..|+..|.+ .+-+.+..+|.+|+.. =|..-..++-.
T Consensus 100 mal~el~q~y~e--n-~n~~l~~lWer~ve~dfnD---vv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~e 172 (711)
T COG1747 100 MALLELLQCYKE--N-GNEQLYSLWERLVEYDFND---VVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKE 172 (711)
T ss_pred HHHHHHHHHHHh--c-CchhhHHHHHHHHHhcchh---HHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHH
Confidence 555554444432 2 3455667777777654433 2333355555544 8889999999998865 12111111111
Q ss_pred H-----HHhcCChHHHHHHHHHHHhccC-cchhH-HHHH-hhcC---ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhc
Q 002100 498 T-----KFKRGHKYSAYKLMNSLISDYT-PVGWM-YQER-SLYC---SGKEKMMDLNTATELDPTLSYPYKYRAILLVEE 566 (967)
Q Consensus 498 ~-----~~~~g~~~~A~~~l~~~i~~~~-~~g~~-~~~~-~~y~---~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 566 (967)
+ .+.-.+.+.-+....++..... ..+.+ ++.. ..|. +.++|+..+.-.++.+..+..+...+-..+...
T Consensus 173 vWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~ 252 (711)
T COG1747 173 VWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDK 252 (711)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHH
Confidence 1 1122233333333333333111 11221 1111 1221 446666666666666666655554443322211
Q ss_pred CcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 567 NKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 567 g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
-+--. +.+-|.....+-..-.++-.|+..|++.+..+..+-.++
T Consensus 253 y~~~~-------------~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnFVfH 296 (711)
T COG1747 253 YRGHS-------------QLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNFVFH 296 (711)
T ss_pred hccch-------------hHHHHHHhcchhhccccHHHHHHHHHHHheeccCceEEe
Confidence 00000 222333334444445678888999999988877765544
No 358
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=92.11 E-value=0.42 Score=53.47 Aligned_cols=82 Identities=18% Similarity=0.082 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHc-------cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHH
Q 002100 833 QRKAAYDEMTKLIEKARNNASAYEKRSE-------YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAEL 905 (967)
Q Consensus 833 ~~~~A~~~~~~al~~~p~~~~~~~~~~~-------~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~ 905 (967)
....|+..|.+++...|.....|..++. .++.-.|+.+-..|++++|....+++.++.++...+++.+|+...
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~ 468 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCH 468 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence 3555666666666666665555555441 155566666666666666666666666666666666666666666
Q ss_pred HHHHhcCCC
Q 002100 906 SRAIAFKPD 914 (967)
Q Consensus 906 ~kal~~~p~ 914 (967)
..+....|.
T Consensus 469 ~alq~~~Pt 477 (758)
T KOG1310|consen 469 WALQMSFPT 477 (758)
T ss_pred HHHhhcCch
Confidence 555555553
No 359
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=91.92 E-value=0.57 Score=52.41 Aligned_cols=86 Identities=17% Similarity=0.087 Sum_probs=78.0
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhc---CcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEE---NKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRA 611 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~ 611 (967)
..|+..|.+++...|.....|.++|.++++. |+.-.|+.....++.++| ...+++.++.+...++.+.+|+.+...
T Consensus 391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~a 470 (758)
T KOG1310|consen 391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWA 470 (758)
T ss_pred HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHH
Confidence 7889999999999999999999999999886 567789999999999999 788999999999999999999999998
Q ss_pred HHHhCCCchH
Q 002100 612 LLTLDPSYMM 621 (967)
Q Consensus 612 al~l~p~~~~ 621 (967)
+....|.+..
T Consensus 471 lq~~~Ptd~a 480 (758)
T KOG1310|consen 471 LQMSFPTDVA 480 (758)
T ss_pred HhhcCchhhh
Confidence 8888886543
No 360
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.89 E-value=3.1 Score=47.81 Aligned_cols=126 Identities=20% Similarity=0.110 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHH--Hc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHH
Q 002100 833 QRKAAYDEMTKLIEKARNNASAYEKR--SE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELS 906 (967)
Q Consensus 833 ~~~~A~~~~~~al~~~p~~~~~~~~~--~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~ 906 (967)
....++..+...+..+|.++...... +. .+....+...+..++..+|++..++.++|..+...|....++..+.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33335555555556666666654333 32 2666777888888889999999999999988888888777777776
Q ss_pred H-HHhcCCChH-HHHH------HHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 002100 907 R-AIAFKPDLQ-LLHL------RAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKA 958 (967)
Q Consensus 907 k-al~~~p~~~-~~~~------~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~ 958 (967)
. +....|++. .... .+.....+|+..++...++++.++.|.++.++..+.-.
T Consensus 126 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 126 EIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 6 777777742 2222 58888888999999999999999999988776654443
No 361
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.80 E-value=0.32 Score=34.93 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 002100 457 QLAFHQLGVVMLEREEYKDAQNWFKAAVEA 486 (967)
Q Consensus 457 a~a~~~lG~~~~~~g~y~~A~~~f~~al~~ 486 (967)
+.++..+|.+|..+|+|++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457889999999999999999999999986
No 362
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=91.72 E-value=0.66 Score=43.71 Aligned_cols=100 Identities=7% Similarity=-0.026 Sum_probs=73.3
Q ss_pred CcccEEEEEcCeEEEehhHHHhccCHHH-HHhhcCCCC---CCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHHHH
Q 002100 254 EDWDMSFCIGNDEIRCVRYKIASLSRPF-RTMLYGGFI---ESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLV 329 (967)
Q Consensus 254 ~~~Dv~~~v~~~~~~~hr~vLa~~S~~F-~~~~~~~~~---e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~ 329 (967)
...-|.|-|||..|.--|.-|.--+.-| ..+.+..+. .....---+-| -+|.-|--||.|+..|++ .++.-.-
T Consensus 19 ~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlID--RDP~~FgpvLNylRhgkl-vl~~l~e 95 (210)
T KOG2715|consen 19 VSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLID--RDPFYFGPVLNYLRHGKL-VLNKLSE 95 (210)
T ss_pred ceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEec--cCcchHHHHHHHHhcchh-hhhhhhh
Confidence 3456888899999999999998888555 555554321 11112233333 688999999999999999 6777556
Q ss_pred HHHHHHhchhChHHHHHHHHHHHHhhC
Q 002100 330 LELLSFANRFCCEELKSACDSYLASMV 356 (967)
Q Consensus 330 ~~ll~~A~~~~~~~l~~~c~~~l~~~~ 356 (967)
..+|.=|++|.++.|+.+....+.+..
T Consensus 96 eGvL~EAefyn~~~li~likd~i~dRd 122 (210)
T KOG2715|consen 96 EGVLEEAEFYNDPSLIQLIKDRIQDRD 122 (210)
T ss_pred hccchhhhccCChHHHHHHHHHHHHHh
Confidence 688999999999999877666665554
No 363
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.28 E-value=19 Score=41.82 Aligned_cols=51 Identities=22% Similarity=0.109 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 682 FRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESIS 740 (967)
Q Consensus 682 ~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 740 (967)
...+..+.++..+.-|.+.|++.-. ...+...+...+++++|....++--+
T Consensus 751 ~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 751 LLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcc
Confidence 3344444444555555555544311 11233444555666666655554433
No 364
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.24 E-value=8.7 Score=37.22 Aligned_cols=140 Identities=12% Similarity=-0.020 Sum_probs=79.2
Q ss_pred HHhcCcHHHHHHHHHHHhccCC-C--hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHh
Q 002100 563 LVEENKLAAAITEINRIIGFKV-S--PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLV 639 (967)
Q Consensus 563 ~~~~g~~~~A~~~~~~al~~~p-~--~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~ 639 (967)
+.+.++.++|+..|..+-+..- + .-+.+..|.+..+.|+...|+..|..+-.-.|........ +-..-+.+....
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~--ARlraa~lLvD~ 145 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDL--ARLRAAYLLVDN 145 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHH--HHHHHHHHHhcc
Confidence 3455677888888877765554 2 3466777888888888888888888876654432222100 001112223333
Q ss_pred hchhhHhhHHHHHhhhccccccchHHHHHH-HHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHH
Q 002100 640 QQWSQADCWMQLYDRWSSVDDIGSLAVVHH-MLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYE 718 (967)
Q Consensus 640 ~~~~~A~~~~~l~~~~~~~d~~~al~~~~~-~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~l 718 (967)
+-|++- -...+. +-+.+|-...+.-.+|..-++.|++..|...|..... +...+....+.
T Consensus 146 gsy~dV------------------~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqR 206 (221)
T COG4649 146 GSYDDV------------------SSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQR 206 (221)
T ss_pred ccHHHH------------------HHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHH
Confidence 333322 000100 1122344455666778888888888888888887766 44445555555
Q ss_pred HHHHH
Q 002100 719 GWILY 723 (967)
Q Consensus 719 g~~~~ 723 (967)
+.+..
T Consensus 207 Aq~ml 211 (221)
T COG4649 207 AQIML 211 (221)
T ss_pred HHHHH
Confidence 55544
No 365
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=91.09 E-value=25 Score=37.87 Aligned_cols=241 Identities=17% Similarity=0.132 Sum_probs=136.3
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCc----chhHHH---HHh
Q 002100 458 LAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTP----VGWMYQ---ERS 530 (967)
Q Consensus 458 ~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~----~g~~~~---~~~ 530 (967)
.....+|..+.+.|++++=....+... |.+...+-+ ++.++.+.+++.++. .|.... +--
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~R---pf~~~v~Ka----------kaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cI 115 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLR---PFLSSVSKA----------KAAKLVRSLVDMFLKIDDGTGDQIELCTECI 115 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHH---HHHHHhhhH----------HHHHHHHHHHHHHccCCCCcchHHHHHHHHH
Confidence 455677777888877776655554332 222333322 244555555553321 111000 000
Q ss_pred hcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhcc----CC---ChhHHHHHHHHHHHhcCHH
Q 002100 531 LYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGF----KV---SPDCLELRAWISIALEDYD 603 (967)
Q Consensus 531 ~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p---~~~~~~~la~~~~~~g~~~ 603 (967)
.| --.+-...+++.++ ..+...|+..++|.+|+......+.. +. -.+.+..-...|.++.+..
T Consensus 116 eW-A~~ekRtFLRq~Le---------arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~ 185 (411)
T KOG1463|consen 116 EW-AKREKRTFLRQSLE---------ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLP 185 (411)
T ss_pred HH-HHHHhHHHHHHHHH---------HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcch
Confidence 11 01222233444433 35788999999999999988877642 22 3567777788999999999
Q ss_pred HHHHHHHHHHHh-----CCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCC--
Q 002100 604 GALRDVRALLTL-----DPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPG-- 676 (967)
Q Consensus 604 ~A~~~~~~al~l-----~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~-- 676 (967)
+|...+..|-.. .|-...+. .+..-|.++....+|..| ..+|..+++-...
T Consensus 186 KakasLTsART~AnaiYcpPqlQa~----lDLqSGIlha~ekDykTa------------------fSYFyEAfEgf~s~~ 243 (411)
T KOG1463|consen 186 KAKASLTSARTTANAIYCPPQLQAT----LDLQSGILHAAEKDYKTA------------------FSYFYEAFEGFDSLD 243 (411)
T ss_pred hHHHHHHHHHHhhcccccCHHHHHH----HHHhccceeecccccchH------------------HHHHHHHHccccccC
Confidence 998888776544 12111111 123445666666777777 5555555553321
Q ss_pred -ChHH-----HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH--HcCChHHHHHHHHHHHhccc
Q 002100 677 -KSLL-----RFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILY--DTGHREEALAKAEESISIQR 743 (967)
Q Consensus 677 -~~~~-----~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~--~~g~~~eA~~~~~~al~~~p 743 (967)
+..+ |..+..+.+.+-+--.++-.-+.+++....+.+++...+.++. .+.+|+.|+..|+.-+..+|
T Consensus 244 ~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 244 DDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred CcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 1111 2223333332323333444456677777777888888877765 35688899999998888887
No 366
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.53 E-value=4 Score=40.56 Aligned_cols=64 Identities=17% Similarity=0.104 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhC----c-hhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 002100 454 WQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAG----H-IYSLVGVARTKFKRGHKYSAYKLMNSLIS 517 (967)
Q Consensus 454 ~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~----~-~~a~~~la~~~~~~g~~~~A~~~l~~~i~ 517 (967)
.....++..+|..|.+.|++++|+++|.++.+.. + ......+.++....|++......+.++-.
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445788899999999999999999999988872 2 44556667777777777766666655543
No 367
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.50 E-value=1.7 Score=41.73 Aligned_cols=70 Identities=16% Similarity=0.080 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYD 603 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~ 603 (967)
+.+++...+...--+.|..+..-..-|.+++..|+|.+|+..++.+....| .+.+--+++.|+..++|.+
T Consensus 25 ~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 25 DPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred ChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 346666666666677888888888888889999999999999988887777 7888888888888888764
No 368
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=90.37 E-value=27 Score=37.08 Aligned_cols=166 Identities=17% Similarity=0.093 Sum_probs=81.5
Q ss_pred hcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhh
Q 002100 469 EREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATEL 548 (967)
Q Consensus 469 ~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l 548 (967)
.+++|++|++.+.... ....+.|+...|.++..-+++.+...+.. ..++.+..+.+.+..
T Consensus 2 ~~kky~eAidLL~~Ga------------~~ll~~~Q~~sg~DL~~lliev~~~~~~~--------~~~~~~~rl~~l~~~ 61 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGA------------LILLKHGQYGSGADLALLLIEVYEKSEDP--------VDEESIARLIELISL 61 (260)
T ss_dssp HTT-HHHHHHHHHHHH------------HHHHHTT-HHHHHHHHHHHHHHHHHTT-----------SHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH------------HHHHHCCCcchHHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHh
Confidence 4678888888765443 33444445444444444444433221110 113344555555554
Q ss_pred CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC--ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhh
Q 002100 549 DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV--SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQL 626 (967)
Q Consensus 549 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 626 (967)
-|...... . .=.+.|++.- + -.-.| +++.+..+|..|.+.+++.+|..+|-.. ++.....
T Consensus 62 ~~~~~p~r---~------~fi~~ai~WS-~-~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~-- 123 (260)
T PF04190_consen 62 FPPEEPER---K------KFIKAAIKWS-K-FGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFA-- 123 (260)
T ss_dssp S-TT-TTH---H------HHHHHHHHHH-H-TSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHH--
T ss_pred CCCCcchH---H------HHHHHHHHHH-c-cCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHH--
Confidence 44332211 1 1123444444 2 23344 8999999999999999999998877432 2222220
Q ss_pred hhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHH-HHHhcCHHHHHHHHHHHH
Q 002100 627 HGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLL-LLRLNSQKAAMRSLRLAR 705 (967)
Q Consensus 627 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~-~~~~g~~~~A~~~l~~al 705 (967)
+. .-.+....+..|.....+..++.+ |+..++...|...+....
T Consensus 124 ---------~~--------------------------~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 124 ---------YV--------------------------MLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFT 168 (260)
T ss_dssp ---------HH--------------------------HHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred ---------HH--------------------------HHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 00 001111223345555666555544 677899998888776665
Q ss_pred hc
Q 002100 706 NY 707 (967)
Q Consensus 706 ~~ 707 (967)
+.
T Consensus 169 ~~ 170 (260)
T PF04190_consen 169 SK 170 (260)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 369
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.34 E-value=26 Score=36.77 Aligned_cols=251 Identities=14% Similarity=0.069 Sum_probs=133.1
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhCc----------hhHHHHHHHHHHhcCChHHHHH-------------------HH
Q 002100 462 QLGVVMLEREEYKDAQNWFKAAVEAGH----------IYSLVGVARTKFKRGHKYSAYK-------------------LM 512 (967)
Q Consensus 462 ~lG~~~~~~g~y~~A~~~f~~al~~~~----------~~a~~~la~~~~~~g~~~~A~~-------------------~l 512 (967)
.+++-..+.+++++|+..|.+.+..+. ..+...+..+|...|++..--+ .+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 345556667788888888887776621 3345566677777776542222 22
Q ss_pred HHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCc------hhHHHHHHHHHhcCcHHHHHHHHHHHhcc----
Q 002100 513 NSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLS------YPYKYRAILLVEENKLAAAITEINRIIGF---- 582 (967)
Q Consensus 513 ~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 582 (967)
+.+++.++..... .+.-+..++..++-....- ..-..+...++..|+|.+|+..++..+..
T Consensus 88 rtLiekf~~~~ds---------l~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~ 158 (421)
T COG5159 88 RTLIEKFPYSSDS---------LEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY 158 (421)
T ss_pred HHHHHhcCCCCcc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 2333333322111 1222222222222111100 11234677899999999999988876532
Q ss_pred C--C-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhh
Q 002100 583 K--V-SPDCLELRAWISIALEDYDGALRDVRALLTL-----DPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDR 654 (967)
Q Consensus 583 ~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~ 654 (967)
+ | -.+.+..-..+|....+..++...+..+-.. .|....+. .+.+-|.+...-.+|..|
T Consensus 159 DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~----lDL~sGIlhcdd~dyktA--------- 225 (421)
T COG5159 159 DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQ----LDLLSGILHCDDRDYKTA--------- 225 (421)
T ss_pred cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHH----HHHhccceeeccccchhH---------
Confidence 2 2 3567788889999999998888877766544 33322222 113344555555566666
Q ss_pred hccccccchHHHHHHHHhcCCC---Ch-----HHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCCchhHHHHHHHHHHH--
Q 002100 655 WSSVDDIGSLAVVHHMLANDPG---KS-----LLRFRQSLLLLRLNSQKAAMRSLRLARN-YSTSEHEKLVYEGWILY-- 723 (967)
Q Consensus 655 ~~~~d~~~al~~~~~~l~~~p~---~~-----~~~~~~g~~~~~~g~~~~A~~~l~~al~-~~p~~~~a~~~lg~~~~-- 723 (967)
-.+|-.+++-... +. .-|..++.+.....+--.|+-.-+..++ .+....+++...+..+-
T Consensus 226 ---------~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NR 296 (421)
T COG5159 226 ---------SSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNR 296 (421)
T ss_pred ---------HHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCC
Confidence 4555555543321 11 1122333333322222222222223333 23334556655555553
Q ss_pred HcCChHHHHHHHHHHHhccc
Q 002100 724 DTGHREEALAKAEESISIQR 743 (967)
Q Consensus 724 ~~g~~~eA~~~~~~al~~~p 743 (967)
.+.+|..|++.|+.-+.-+|
T Consensus 297 sL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 297 SLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred cHhhHHHHHHHhhHHhccCH
Confidence 45678899999988776666
No 370
>COG4371 Predicted membrane protein [Function unknown]
Probab=90.17 E-value=0.5 Score=47.39 Aligned_cols=11 Identities=27% Similarity=0.006 Sum_probs=5.5
Q ss_pred HhHhhHhhhhh
Q 002100 180 IVLAAWLRFER 190 (967)
Q Consensus 180 ~~~~~w~~~~~ 190 (967)
..+.+|.--||
T Consensus 214 ~qfn~lAl~eR 224 (334)
T COG4371 214 NQFNALALEER 224 (334)
T ss_pred HHHHHHHHHHH
Confidence 34566644443
No 371
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=90.13 E-value=0.35 Score=51.76 Aligned_cols=130 Identities=14% Similarity=0.054 Sum_probs=90.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHH
Q 002100 824 LARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIA 903 (967)
Q Consensus 824 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~ 903 (967)
.+.-.++.+++..|..-|.+++..... ...- +..+... +...+.+.....+.+++.+-.+.+.+..|+.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~-------~s~~-~~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~ 296 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSE-------QSRD-REKEQEN---RIPPLRELRFSIRRNLAAVGLKVKGRGGARF 296 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcc-------cccc-ccccccc---ccccccccccccccchHHhcccccCCCccee
Confidence 344566777777777777766653221 0000 0000000 1222334445566678889999999999998
Q ss_pred HHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhhh
Q 002100 904 ELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVNE 964 (967)
Q Consensus 904 ~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~~ 964 (967)
.-.-+++.++. ..+++.++..+....++++|+++++.+....|++.++.+.+..+....++
T Consensus 297 ~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 297 RTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQ 358 (372)
T ss_pred ccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence 88888886666 34899999999999999999999999999999999998877766655543
No 372
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.10 E-value=11 Score=43.32 Aligned_cols=149 Identities=14% Similarity=0.070 Sum_probs=101.5
Q ss_pred hcccHHHHHHHHHHHhc--------------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----c----------
Q 002100 798 DCEKLDLAADCYMNALN--------------IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEK-----A---------- 848 (967)
Q Consensus 798 ~~g~~~~A~~~~~~Al~--------------~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-----~---------- 848 (967)
....|++|...|.-|+. +-|.+.+..+|.+...+|+.+-|.+...+++=. .
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 44567788888877765 223458888999999999988888877766532 1
Q ss_pred ------cCCHHHHHHHHc-------cCChHHHHHHHHHhhccCCC-CchHHHHHHHHHHh-CCCHHHHHHHHHHH-----
Q 002100 849 ------RNNASAYEKRSE-------YCDRDMAKSDLSMATQLDPM-RTYPYRYRAAVLMD-DHKEAEAIAELSRA----- 908 (967)
Q Consensus 849 ------p~~~~~~~~~~~-------~~~~~~A~~~l~~al~l~p~-~~~~~~~la~~~~~-~g~~~eAi~~~~ka----- 908 (967)
|.|-..|..+-. -|=...|.+..+..++++|. ++.+...+-.+|.- ..+|+=-|..++..
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 223333332221 17788899999999999998 88887777776654 35565555555444
Q ss_pred HhcCCChHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCC
Q 002100 909 IAFKPDLQLLHLRAAFHDSMGD---HLHTQRDCEAALCLDP 946 (967)
Q Consensus 909 l~~~p~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~P 946 (967)
+..-|+...-..+|.+|..... .+.|+..+.+|+...|
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 2333443334446777777666 7889999999999988
No 373
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.09 E-value=26 Score=43.96 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=12.2
Q ss_pred hHHHHHhcccHHHHHHHHHHH
Q 002100 792 LGSVYVDCEKLDLAADCYMNA 812 (967)
Q Consensus 792 lg~~~~~~g~~~~A~~~~~~A 812 (967)
.+..|...|+.++|+.+|+.+
T Consensus 958 Aal~Ye~~GklekAl~a~~~~ 978 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYKEC 978 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHHh
Confidence 355566666666666665443
No 374
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.08 E-value=8.9 Score=36.96 Aligned_cols=64 Identities=22% Similarity=0.244 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 683 RQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 683 ~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
....+-...++.+.+...+....-+.|+.++.-..-|+++...|++.+|+..++...+..|.++
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 3444555667888888888888888888888888888888888888888888888776666544
No 375
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=90.01 E-value=0.16 Score=54.70 Aligned_cols=145 Identities=14% Similarity=0.112 Sum_probs=110.7
Q ss_pred cEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCC-CCCHHHHHHHHHH
Q 002100 257 DMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLD-SFDPRLVLELLSF 335 (967)
Q Consensus 257 Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~-~~~~~~~~~ll~~ 335 (967)
|+++......+++|+.+|...|+.|..+....-.-+....+.+.. ++...+..+..++|.+ ++ .-.......++.+
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~ 104 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILG--VPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLAL 104 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeec--ccccccchhhhhhccc-hhhhHHHHHHHHHHhh
Confidence 344455677899999999999999988876552333334566644 7889999999999988 52 1223346677788
Q ss_pred hchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhhcCCchhHhhhhcc
Q 002100 336 ANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCS 404 (967)
Q Consensus 336 A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~l~~~~~~~ll~s 404 (967)
...|.++.++..|+..+...+-+..|++..+..+..+..+.|..++...|...+.....++.....-++
T Consensus 105 ~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~~c~ 173 (319)
T KOG1778|consen 105 SHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAYTCP 173 (319)
T ss_pred hhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceeeecC
Confidence 789999999999999998854438899999999999999999999999999888876665444443333
No 376
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.85 E-value=11 Score=37.80 Aligned_cols=93 Identities=12% Similarity=0.066 Sum_probs=60.5
Q ss_pred HHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhcc-CCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-----
Q 002100 841 MTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQL-DPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD----- 914 (967)
Q Consensus 841 ~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l-~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~----- 914 (967)
+..-.+..++-..+|+.-...|+ ++|..-|-++-.. .=+++...+.+|..|. ..+.++|+..+.+++++.+.
T Consensus 100 L~~~tk~S~dP~llYy~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n 177 (203)
T PF11207_consen 100 LQEETKNSQDPYLLYYHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFN 177 (203)
T ss_pred HHHHHccCCCccHHHHHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCC
Confidence 33333333333334444444444 4455554443221 1245677777886555 68899999999999987544
Q ss_pred hHHHHHHHHHHHHcCChHHHH
Q 002100 915 LQLLHLRAAFHDSMGDHLHTQ 935 (967)
Q Consensus 915 ~~~~~~~a~~~~~~g~~~~A~ 935 (967)
++++..++.++.++|+++.|-
T Consensus 178 ~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 178 PEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHHHHhcchhhhh
Confidence 568999999999999999885
No 377
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.79 E-value=2.3 Score=47.12 Aligned_cols=89 Identities=12% Similarity=0.041 Sum_probs=50.3
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
|...|-..+..++...|.++.....++.+....|+|+.|...+..+-++-. ...+...+-+-...++++++|...-.-.
T Consensus 304 d~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~ 383 (831)
T PRK15180 304 DIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMM 383 (831)
T ss_pred CHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 445566666666666666666666666666666666666666655444333 2333444444555666666666655555
Q ss_pred HHhCCCchHH
Q 002100 613 LTLDPSYMMF 622 (967)
Q Consensus 613 l~l~p~~~~~ 622 (967)
+.-.-+++..
T Consensus 384 l~~eie~~ei 393 (831)
T PRK15180 384 LSNEIEDEEV 393 (831)
T ss_pred hccccCChhh
Confidence 5444333333
No 378
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.35 E-value=0.56 Score=47.12 Aligned_cols=58 Identities=17% Similarity=0.055 Sum_probs=47.2
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccch
Q 002100 688 LLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSF 745 (967)
Q Consensus 688 ~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 745 (967)
....++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|.+.|++.++++|..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4456778888888888888888888888888888888888888888888888888854
No 379
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.33 E-value=47 Score=38.27 Aligned_cols=249 Identities=10% Similarity=-0.032 Sum_probs=139.7
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE----HEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~----~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
.+.+.......|.++...+..+..+...|+.+.|+..++..+. +.. +-.++.+|+++..+.+|..|-..+....
T Consensus 253 ~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~ 330 (546)
T KOG3783|consen 253 EKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLR 330 (546)
T ss_pred HHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445566667899888888889999999998888888888877 332 2345678999999999999988888877
Q ss_pred hcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHh--------cccHHHHHHHHHH
Q 002100 740 SIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVD--------CEKLDLAADCYMN 811 (967)
Q Consensus 740 ~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~--------~g~~~~A~~~~~~ 811 (967)
+.+.-..++| -+..|.++++ .|+-++|..+++.
T Consensus 331 desdWS~a~Y---------------------------------------~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~ 371 (546)
T KOG3783|consen 331 DESDWSHAFY---------------------------------------TYFAGCCLLQNWEVNQGAGGNEEKAQLYFKV 371 (546)
T ss_pred hhhhhhHHHH---------------------------------------HHHHHHHHhccHHHHHhcccchhHHHHHHHH
Confidence 6554222111 1111222211 2233333333332
Q ss_pred Hhc-------cCcHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc-CChHH---HHHHHHHhhccCC
Q 002100 812 ALN-------IKHTR-AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY-CDRDM---AKSDLSMATQLDP 879 (967)
Q Consensus 812 Al~-------~~~~~-a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~~---A~~~l~~al~l~p 879 (967)
..+ ..|.+ ....-+.-+...+. -.+...+.. |-..-+|...|-- ...++ ....++.----|+
T Consensus 372 ~~~l~~~a~K~~P~E~f~~RKverf~~~~~-~~~~~~la~-----P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~ 445 (546)
T KOG3783|consen 372 GEELLANAGKNLPLEKFIVRKVERFVKRGP-LNASILLAS-----PYYELAYFWNGFSRMSKNELEKMRAELENPKIDDS 445 (546)
T ss_pred HHHHHHhccccCchhHHHHHHHHHHhcccc-ccccccccc-----hHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCc
Confidence 221 12222 11112222222221 000000000 2222233333321 11122 1222221111133
Q ss_pred CCch-HHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCC----hHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCch
Q 002100 880 MRTY-PYRYRAAVLMDDHKEAEAIAELSRAIAF----KPD----LQLLHLRAAFHDSMGD-HLHTQRDCEAALCLDPNHT 949 (967)
Q Consensus 880 ~~~~-~~~~la~~~~~~g~~~eAi~~~~kal~~----~p~----~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~P~~~ 949 (967)
++.- -+..+|.++...|+...|..+|..+.+. ..+ |-++|.+|.+++.+|. ..++..++.+|-+...++.
T Consensus 446 Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 446 DDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 3332 3456789999999999999999888742 222 3489999999999999 9999999999988876654
Q ss_pred hHHHHHHHHH
Q 002100 950 DTLELYDKAT 959 (967)
Q Consensus 950 ~~l~l~~r~~ 959 (967)
---.+.-|++
T Consensus 526 lenRLh~rIq 535 (546)
T KOG3783|consen 526 LENRLHMRIQ 535 (546)
T ss_pred hhhHHHHHHH
Confidence 3333444443
No 380
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.02 E-value=0.55 Score=33.62 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=19.9
Q ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHhc
Q 002100 787 QALNNLGSVYVDCEKLDLAADCYMNALN 814 (967)
Q Consensus 787 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 814 (967)
.+++++|.+|..+|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777777777777777777777765
No 381
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=88.57 E-value=38 Score=36.20 Aligned_cols=257 Identities=18% Similarity=0.102 Sum_probs=147.3
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCch
Q 002100 687 LLLRLNSQKAAMRSLRLARNYSTSEHEKLV-YEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESS 765 (967)
Q Consensus 687 ~~~~~g~~~~A~~~l~~al~~~p~~~~a~~-~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~ 765 (967)
++-..+..+-++..++..- .+.+-+.++. ....+.....+.++..+-.-++++ +|+-. ... .+.
T Consensus 44 ll~~TNMiDy~md~~k~l~-~sed~p~a~~ekr~~Vla~lkeLe~ev~piv~~le-~Pd~~-------~~~------~~~ 108 (432)
T KOG2758|consen 44 LLNKTNMIDYVMDTYKNLH-TSEDMPNALVEKRTEVLAELKELEEEVAPIVKVLE-NPDLI-------AAL------RSD 108 (432)
T ss_pred HHcccchHHHHHHHHhccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHH-------HHH------Hhh
Confidence 3344455555565554432 2222233332 234455555555555555544442 23111 000 011
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHH--Hhc--cCcHH--HHHHHHHHHHHhCCHHHHHH
Q 002100 766 AYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMN--ALN--IKHTR--AHQGLARVYHLKNQRKAAYD 839 (967)
Q Consensus 766 ~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~--Al~--~~~~~--a~~~la~~~~~~g~~~~A~~ 839 (967)
..-...++.+.+...-.+....+++..+...+.+|+|..|-.++-. ++- ++... ++.+--..-....+|+.|++
T Consensus 109 k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~e 188 (432)
T KOG2758|consen 109 KDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALE 188 (432)
T ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHH
Confidence 1224566667777777778888999999999999999999886533 333 22222 45554445667789999999
Q ss_pred HHHHHHHHccC-----CHHHHHHHHcc------------CChHHHHHHH------HHhhccCCCCchHHHHHHHHHHhC-
Q 002100 840 EMTKLIEKARN-----NASAYEKRSEY------------CDRDMAKSDL------SMATQLDPMRTYPYRYRAAVLMDD- 895 (967)
Q Consensus 840 ~~~~al~~~p~-----~~~~~~~~~~~------------~~~~~A~~~l------~~al~l~p~~~~~~~~la~~~~~~- 895 (967)
.+.+.-+.-.+ ......++..+ +-.+.-++.| -.|++ ...|..+++++.+..-.
T Consensus 189 dL~rLre~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQ--t~cPhllRYLatAvvtnk 266 (432)
T KOG2758|consen 189 DLTRLREYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQ--TSCPHLLRYLATAVVTNK 266 (432)
T ss_pred HHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHH--hhCHHHHHHHHHHhhcch
Confidence 99877664332 22333333311 2222322222 12222 23467888888766655
Q ss_pred CCHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhh
Q 002100 896 HKEAEAIAELSRAIAFKPD---LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATER 961 (967)
Q Consensus 896 g~~~eAi~~~~kal~~~p~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~ 961 (967)
.+...+++.+-|+|+...- +.+-.-+ .+++-.=|+++|...++++-+.--||.-+..++....+.
T Consensus 267 ~~rr~~lkdlvkVIqqE~ysYkDPiteFl-~clyvn~DFdgAq~kl~eCeeVl~nDfFLva~l~~F~E~ 334 (432)
T KOG2758|consen 267 RRRRNRLKDLVKVIQQESYSYKDPITEFL-ECLYVNYDFDGAQKKLRECEEVLVNDFFLVALLDEFLEN 334 (432)
T ss_pred HhhHHHHHHHHHHHHHhccccCCcHHHHH-HHHhhccchHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 7888999999999976432 1122222 334445689999998888877777776666655554443
No 382
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.15 E-value=8.4 Score=38.27 Aligned_cols=90 Identities=11% Similarity=0.024 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC----ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCchHHhhhhh
Q 002100 554 YPYKYRAILLVEENKLAAAITEINRIIGFKV----SPDCLELRAWISIALEDYDGALRDVRALLTL--DPSYMMFYGQLH 627 (967)
Q Consensus 554 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~ 627 (967)
.++..+|..|.+.|++++|++.|.++.+... ..+.++.+..+.+..+++..+...+.++-.+ .+.+.....++.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5788999999999999999999999888665 3668888899999999999999999888766 233333333322
Q ss_pred hhhhHhhhHHHhhchhhH
Q 002100 628 GDNLVETLQPLVQQWSQA 645 (967)
Q Consensus 628 ~~~~~~~l~~~~~~~~~A 645 (967)
...|+.+...++|..|
T Consensus 117 --~~~gL~~l~~r~f~~A 132 (177)
T PF10602_consen 117 --VYEGLANLAQRDFKEA 132 (177)
T ss_pred --HHHHHHHHHhchHHHH
Confidence 3456666777788877
No 383
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.13 E-value=2.4 Score=47.00 Aligned_cols=157 Identities=14% Similarity=0.101 Sum_probs=109.8
Q ss_pred HHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhc
Q 002100 563 LVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQ 641 (967)
Q Consensus 563 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~ 641 (967)
....|+...|-+.+..++...| .|....+++.++..+|+|+.|..++..+-..-..-..+. ..+-.-...+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~------~~~~r~~~~l~r 372 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTL------RCRLRSLHGLAR 372 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHH------HHHHHhhhchhh
Confidence 4567899999999999999999 899999999999999999999888765544322222222 333455667788
Q ss_pred hhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHH--H
Q 002100 642 WSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYE--G 719 (967)
Q Consensus 642 ~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~l--g 719 (967)
|+.| +....-++...-..+.+..-.+.....++-+++|....++.+.++|.....+.+. .
T Consensus 373 ~~~a------------------~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 373 WREA------------------LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHH------------------HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 8888 7777777777767777777667777788899999999999999988765444432 2
Q ss_pred HHHHHcCC-hHHHHHHHHHHHhccc
Q 002100 720 WILYDTGH-REEALAKAEESISIQR 743 (967)
Q Consensus 720 ~~~~~~g~-~~eA~~~~~~al~~~p 743 (967)
.-|+..|+ +.+|...--+.-.++.
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (831)
T PRK15180 435 TQYFNDGNAFSEAFHAGIQSQRLND 459 (831)
T ss_pred ceeccCcchHHHHHHhhhhhhhhhH
Confidence 23444443 4455444333333333
No 384
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=88.04 E-value=2.3 Score=44.48 Aligned_cols=75 Identities=13% Similarity=0.047 Sum_probs=54.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhh
Q 002100 887 YRAAVLMDDHKEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATER 961 (967)
Q Consensus 887 ~la~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~ 961 (967)
++-.+++..++++.|....++.+.++|+. .-+.-+|.+|.++|-+.-|+.+++..++..|+++...-+..++.+-
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~l 261 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLEL 261 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 44456777778888888888888887774 3455678888888888888888888888888877766655555443
No 385
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.96 E-value=25 Score=40.93 Aligned_cols=180 Identities=13% Similarity=0.050 Sum_probs=78.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcccchHHHH-HHHHHhhhcCCCCCchHHHHHHHHHHhcCC--CCCCchHHHHHHh
Q 002100 716 VYEGWILYDTGHREEALAKAEESISIQRSFEAFF-LKAYALADSSLNPESSAYVIQLLEEALRCP--SDGLRKGQALNNL 792 (967)
Q Consensus 716 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~-~~~~~la~~~~~~~~~~~a~~~le~~~~~~--~~~~~~~~a~~~l 792 (967)
..+|.++..+|++.||.+.|.+.=.-+...+.|. +..+.++...+..+..++-..++.+-..-. ...|. ..
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk------aA 709 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK------AA 709 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH------HH
Confidence 4567777788889999888875322222111111 122222222222222222112211111100 00111 12
Q ss_pred HHHHHhcccHHHHHHHHH------HHhc----cCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc
Q 002100 793 GSVYVDCEKLDLAADCYM------NALN----IKHT--RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE 860 (967)
Q Consensus 793 g~~~~~~g~~~~A~~~~~------~Al~----~~~~--~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 860 (967)
+..+...|+.++|+...- -+++ ++.. +.+..++.-+..+..+.-|-+.|.+.-.. ...-...-+
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----ksiVqlHve 785 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----KSLVQLHVE 785 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH----HHHhhheee
Confidence 455666777777765431 1222 1211 24444555455555555555555433211 111111112
Q ss_pred cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002100 861 YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRA 908 (967)
Q Consensus 861 ~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~ka 908 (967)
.+++++|...-++--+.-|+ .|+-.|.-+.+..+++||-+.|-+|
T Consensus 786 ~~~W~eAFalAe~hPe~~~d---Vy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 786 TQRWDEAFALAEKHPEFKDD---VYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cccchHhHhhhhhCcccccc---ccchHHHHhhhhhhHHHHHHHHHHh
Confidence 36777776665554444333 3444455555555555555555444
No 386
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=87.64 E-value=0.35 Score=48.03 Aligned_cols=18 Identities=17% Similarity=0.010 Sum_probs=10.8
Q ss_pred CCcccE-EEEEcCeEEEeh
Q 002100 253 DEDWDM-SFCIGNDEIRCV 270 (967)
Q Consensus 253 ~~~~Dv-~~~v~~~~~~~h 270 (967)
.+.+|- .+.|+++.|.-|
T Consensus 175 qelpeg~~~tvDnk~F~Fd 193 (263)
T KOG3074|consen 175 QELPEGTSITVDNKRFLFD 193 (263)
T ss_pred CCCCCCCeEEEecceeEEe
Confidence 344443 366788877755
No 387
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.57 E-value=13 Score=41.04 Aligned_cols=169 Identities=14% Similarity=0.201 Sum_probs=107.3
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHh------------cCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc--
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVE------------ENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE-- 600 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g-- 600 (967)
+++++.=.+.++.+|+....|..+-.++.. +.-.++-+.....++..+| +..+++.+.++..+.+
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 445555555556666655555444333322 1245666777888888999 7888999999988765
Q ss_pred CHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHH
Q 002100 601 DYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLL 680 (967)
Q Consensus 601 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~ 680 (967)
++..-++..+++++.+|.+..++. .+-.+......- ..+..+-+....+++..++.+-.+
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~------YRRfV~~~~~~~--------------~~~~~~El~ftt~~I~~nfSNYsa 185 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWH------YRRFVVEQAERS--------------RNLEKEELEFTTKLINDNFSNYSA 185 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchH------HHHHHHHHHhcc--------------cccchhHHHHHHHHHhccchhhhH
Confidence 367788889999999998877772 222222221111 001122378888888888888888
Q ss_pred HHHHHHHHHH------hcC------HHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 002100 681 RFRQSLLLLR------LNS------QKAAMRSLRLARNYSTSEHEKLVYEGWILYD 724 (967)
Q Consensus 681 ~~~~g~~~~~------~g~------~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~ 724 (967)
|..+..++.. .|. ...-+.....|+-.+|++..+|++.-+.+-.
T Consensus 186 WhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 186 WHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred HHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 8887777653 221 1223345556777899999998886665544
No 388
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.48 E-value=40 Score=38.39 Aligned_cols=154 Identities=13% Similarity=0.069 Sum_probs=90.9
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHH--HHHHHHHhcCChHHHHHHHHHHHhcc
Q 002100 442 LLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLV--GVARTKFKRGHKYSAYKLMNSLISDY 519 (967)
Q Consensus 442 ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~--~la~~~~~~g~~~~A~~~l~~~i~~~ 519 (967)
+.+++....-...+.-++++.++.+|.+. .-++=...+++.++.+-..+.. .|+..| .+++...+...|.+++..+
T Consensus 84 ~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y-Ekik~sk~a~~f~Ka~yrf 161 (711)
T COG1747 84 IVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY-EKIKKSKAAEFFGKALYRF 161 (711)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH-HHhchhhHHHHHHHHHHHh
Confidence 34444333333445567899999999988 6677788888888885544433 455544 4588999999999998866
Q ss_pred CcchhHHHHHhhcC-----ChHHHHHHHHHhHhhCCCCc----h-hHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhH
Q 002100 520 TPVGWMYQERSLYC-----SGKEKMMDLNTATELDPTLS----Y-PYKYRAILLVEENKLAAAITEINRIIGFKV-SPDC 588 (967)
Q Consensus 520 ~~~g~~~~~~~~y~-----~~~~A~~~~~~al~l~P~~~----~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~ 588 (967)
.+...+..-+..|. -+++--..+....++..++. . ++...-.-|....+|++|++.+..+++.+. +..+
T Consensus 162 I~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~a 241 (711)
T COG1747 162 IPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWA 241 (711)
T ss_pred cchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhH
Confidence 65333222222220 01111122222222222222 1 222233455667889999999999999888 6666
Q ss_pred HHHHHHHHH
Q 002100 589 LELRAWISI 597 (967)
Q Consensus 589 ~~~la~~~~ 597 (967)
...+-..+.
T Consensus 242 r~~~i~~lR 250 (711)
T COG1747 242 RKEIIENLR 250 (711)
T ss_pred HHHHHHHHH
Confidence 655544443
No 389
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=87.43 E-value=2.7 Score=48.99 Aligned_cols=13 Identities=8% Similarity=0.179 Sum_probs=7.4
Q ss_pred hHHHHHhhhhccC
Q 002100 8 NFFTTMRSLKIID 20 (967)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (967)
||++-|...+-..
T Consensus 49 sILaIM~AVGAsr 61 (828)
T PF04094_consen 49 SILAIMSAVGASR 61 (828)
T ss_pred HHHHHHHHhcccc
Confidence 5666666655443
No 390
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.34 E-value=34 Score=39.55 Aligned_cols=139 Identities=18% Similarity=0.104 Sum_probs=79.8
Q ss_pred CC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh---------------------CCCchHHhhhhhhhhhHhhhHHHhh
Q 002100 583 KV-SPDCLELRAWISIALEDYDGALRDVRALLTL---------------------DPSYMMFYGQLHGDNLVETLQPLVQ 640 (967)
Q Consensus 583 ~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l---------------------~p~~~~~~~~~~~~~~~~~l~~~~~ 640 (967)
.| ..+.+..++.+...+||.+-|...++++|=. .|.|..+|. .++.++.
T Consensus 280 sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL---------~l~r~m~ 350 (665)
T KOG2422|consen 280 SPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYL---------ALFRYMQ 350 (665)
T ss_pred CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHH---------HHHHHHH
Confidence 45 6667777777777777777776666666521 233343331 1122222
Q ss_pred chhhHhhHHHHHhhhccccccchHHHHHHHHhcCCC-ChHHHHHHHH-HHHHhcCHHHHHHHHHHHH-----hcCCchhH
Q 002100 641 QWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPG-KSLLRFRQSL-LLLRLNSQKAAMRSLRLAR-----NYSTSEHE 713 (967)
Q Consensus 641 ~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~-~~~~~~~~g~-~~~~~g~~~~A~~~l~~al-----~~~p~~~~ 713 (967)
...+--||. .|+++..-++.++|. +|.....+-. ..++.++|.=-++.++..- ..-|+..
T Consensus 351 ~l~~RGC~r------------TA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~- 417 (665)
T KOG2422|consen 351 SLAQRGCWR------------TALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG- 417 (665)
T ss_pred HHHhcCChH------------HHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-
Confidence 222222231 237888888899998 7765444433 3456677777777666652 2334422
Q ss_pred HHHHHHHHHHHcCC---hHHHHHHHHHHHhccc
Q 002100 714 KLVYEGWILYDTGH---REEALAKAEESISIQR 743 (967)
Q Consensus 714 a~~~lg~~~~~~g~---~~eA~~~~~~al~~~p 743 (967)
.-..+|..|..... .+.|+..+.+|+...|
T Consensus 418 yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 418 YSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 12234455544443 5678889999998888
No 391
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=86.82 E-value=4.7 Score=50.75 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=48.7
Q ss_pred CCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH----------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002100 779 PSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT----------RAHQGLARVYHLKNQRKAAYDEMTKLIE 846 (967)
Q Consensus 779 ~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~----------~a~~~la~~~~~~g~~~~A~~~~~~al~ 846 (967)
..++|.-+....+++.++...++++.|+.+.+.|++.... ..+..+++++...+++..|....+....
T Consensus 1050 ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 3456777778899999999999999999999999883221 2455566666666666666655554443
No 392
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.60 E-value=3.8 Score=38.71 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=58.7
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYD 603 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~ 603 (967)
+.+++...+...--+-|+.+..-..-|.+++..|+|.+|+..++.+.+-.+ .+.+-.+++.|+..+||.+
T Consensus 25 d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 25 DPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred CHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 446666666666677899999999999999999999999999999988888 6888888899999888864
No 393
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=86.48 E-value=1.3 Score=31.34 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~l 615 (967)
+++..+|.+-...++|++|+.+|+++|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778888888888888888888888876
No 394
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=86.32 E-value=14 Score=42.79 Aligned_cols=37 Identities=16% Similarity=-0.117 Sum_probs=20.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 002100 685 SLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWI 721 (967)
Q Consensus 685 g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~ 721 (967)
+.++..+++..++...++++....|.++.....+...
T Consensus 149 ~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 149 GRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 5555555666666666666666666655544444333
No 395
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.25 E-value=51 Score=35.28 Aligned_cols=132 Identities=11% Similarity=-0.022 Sum_probs=67.8
Q ss_pred HHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHh
Q 002100 466 VMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTA 545 (967)
Q Consensus 466 ~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~a 545 (967)
..++..+..+-++.-..|+++++..+.+++-.+....--..+|++++++++......-.--+....++ .. .+..
T Consensus 193 ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~--~~----~da~ 266 (556)
T KOG3807|consen 193 KAWRERNPPARIKAAYQALEINNECATAYVLLAEEEATTIVDAERLFKQALKAGETIYRQSQQCQHQS--PQ----HEAQ 266 (556)
T ss_pred HHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhc--cc----hhhh
Confidence 34455566666667777777777544433222212222233566666666552110000000000000 00 0111
Q ss_pred HhhCCCCc--hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC---ChhHHHHHHHHHHHhcCHHH
Q 002100 546 TELDPTLS--YPYKYRAILLVEENKLAAAITEINRIIGFKV---SPDCLELRAWISIALEDYDG 604 (967)
Q Consensus 546 l~l~P~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~ 604 (967)
.+.| .+. +....+|.+..++|+..+|++.+....+..| -...+.++-...+...-|..
T Consensus 267 ~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 267 LRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred hhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 233 3445678899999999999999999988888 13455555555555554433
No 396
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=86.19 E-value=1 Score=31.81 Aligned_cols=29 Identities=28% Similarity=0.451 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 002100 458 LAFHQLGVVMLEREEYKDAQNWFKAAVEA 486 (967)
Q Consensus 458 ~a~~~lG~~~~~~g~y~~A~~~f~~al~~ 486 (967)
.++..||.+-+..++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46788999999999999999999999987
No 397
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=86.05 E-value=3.1 Score=43.57 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=61.2
Q ss_pred hhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 002100 630 NLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYST 709 (967)
Q Consensus 630 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p 709 (967)
.++-..+...++|+.| +....+.+..+|.++.-+.-+|.+|.++|++..|+..++..+++.|
T Consensus 185 ~~lk~~~~~e~~~~~a------------------l~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P 246 (269)
T COG2912 185 RNLKAALLRELQWELA------------------LRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCP 246 (269)
T ss_pred HHHHHHHHHhhchHHH------------------HHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 3445556677778787 8899999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHH
Q 002100 710 SEHEKLVYEGWI 721 (967)
Q Consensus 710 ~~~~a~~~lg~~ 721 (967)
+++.+-.....+
T Consensus 247 ~~~~a~~ir~~l 258 (269)
T COG2912 247 DDPIAEMIRAQL 258 (269)
T ss_pred CchHHHHHHHHH
Confidence 988765544433
No 398
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=85.86 E-value=1.5 Score=36.93 Aligned_cols=50 Identities=22% Similarity=0.291 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCC--ChhhHHHHHHHHHHh
Q 002100 323 SFDPRLVLELLSFANRFCCEELKSACDSYLASMVS--DIEDAVMLIEYGLEE 372 (967)
Q Consensus 323 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~--~~~n~~~~~~~A~~~ 372 (967)
.++.+.+.+|+.+|++++|+.|.+.|...++..+. +++.+..++.+...+
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~ 61 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDL 61 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TS
T ss_pred HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCC
Confidence 35778999999999999999999999999998886 245555555444433
No 399
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.71 E-value=79 Score=36.95 Aligned_cols=177 Identities=14% Similarity=0.006 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHH
Q 002100 711 EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALN 790 (967)
Q Consensus 711 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~ 790 (967)
+...|....+.-...|+++...-.|++++---..+..++.+-....... +..+-+-..+..+.+... +.......
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~---~~~~~~~~~~~~~~~i~~--k~~~~i~L 370 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESS---GDVSLANNVLARACKIHV--KKTPIIHL 370 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHc---CchhHHHHHHHhhhhhcC--CCCcHHHH
Confidence 3445556666666777777777777776633332222221111111111 111111111111111111 11112333
Q ss_pred HhHHHHHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHH---HHHHHHHHccCC---HHHHHHHHcc-
Q 002100 791 NLGSVYVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYD---EMTKLIEKARNN---ASAYEKRSEY- 861 (967)
Q Consensus 791 ~lg~~~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~---~~~~al~~~p~~---~~~~~~~~~~- 861 (967)
.-+.+-...|+++.|...|++..+ ++-..+-..-+.....+|+.+.+.. .+....+.-.++ ...+...+.+
T Consensus 371 ~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 371 LEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 334444555666666666666655 2222233444445555555555552 222111111111 1111111211
Q ss_pred ----CChHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 002100 862 ----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVL 892 (967)
Q Consensus 862 ----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~ 892 (967)
++.+.|...+.++++..|.+...+..+-...
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFE 485 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHH
Confidence 5556666666666666666555555444433
No 400
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=85.20 E-value=6.9 Score=49.35 Aligned_cols=164 Identities=18% Similarity=0.172 Sum_probs=108.4
Q ss_pred hHHHHHHHHHhcCcHHHHHH------HHHHHhc-cCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCC
Q 002100 555 PYKYRAILLVEENKLAAAIT------EINRIIG-FKV-SPDCLELRAWISIALEDYDGALRDVRALLTL--------DPS 618 (967)
Q Consensus 555 ~~~~la~~~~~~g~~~~A~~------~~~~al~-~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--------~p~ 618 (967)
-....+......+.+.+|.+ .++.... +.| ...+|..++.++..++++++|+..-.++.-+ .|+
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 34566777788888988888 4443332 344 6789999999999999999999988777654 223
Q ss_pred chHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHh--------cCCCChHHHHHHHHHHHH
Q 002100 619 YMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLA--------NDPGKSLLRFRQSLLLLR 690 (967)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~--------~~p~~~~~~~~~g~~~~~ 690 (967)
....+ -++++.....++-..| +..+.++.. ..|.-.....+++.++..
T Consensus 1014 t~~~y------~nlal~~f~~~~~~~a------------------l~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~ 1069 (1236)
T KOG1839|consen 1014 TKLAY------GNLALYEFAVKNLSGA------------------LKSLNRALKLKLLSSGEDHPPTALSFINLELLLLG 1069 (1236)
T ss_pred HHHHh------hHHHHHHHhccCccch------------------hhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhh
Confidence 33333 3334444444433333 555555443 246666677889999999
Q ss_pred hcCHHHHHHHHHHHHhcCCc--------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 002100 691 LNSQKAAMRSLRLARNYSTS--------EHEKLVYEGWILYDTGHREEALAKAEESISIQ 742 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~p~--------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 742 (967)
.++++.|++.++.|...+.. ....+..++.+....+++..|+...+....+.
T Consensus 1070 v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy 1129 (1236)
T KOG1839|consen 1070 VEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIY 1129 (1236)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHH
Confidence 99999999999999885433 22334455666666666666666666555433
No 401
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=84.43 E-value=3.7 Score=35.97 Aligned_cols=58 Identities=16% Similarity=0.230 Sum_probs=46.7
Q ss_pred HHHHhcCcHHHHHHHHHHHhccCC-----C-----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002100 561 ILLVEENKLAAAITEINRIIGFKV-----S-----PDCLELRAWISIALEDYDGALRDVRALLTLDPS 618 (967)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~al~~~p-----~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 618 (967)
......++|.+|++.+.+.+.... . ..++..+|.++...|++++|+..+++++.+...
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 345678899999888888876644 1 346788999999999999999999999987443
No 402
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=84.33 E-value=3.7 Score=35.91 Aligned_cols=57 Identities=28% Similarity=0.269 Sum_probs=45.7
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCc---------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 687 LLLRLNSQKAAMRSLRLARNYSTS---------EHEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 687 ~~~~~g~~~~A~~~l~~al~~~p~---------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
..++.++|.+|++.+.+....... ...++.++|.++...|++++|+..+++++++..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 346789999998888777654322 245678899999999999999999999997766
No 403
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=83.95 E-value=86 Score=35.88 Aligned_cols=55 Identities=20% Similarity=0.117 Sum_probs=48.0
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCc-HHHHHHHHHHHhccCC-ChhHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENK-LAAAITEINRIIGFKV-SPDCLE 590 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p-~~~~~~ 590 (967)
.+--..|.+++..+|+++..|..-|.-.+..+. .+.|...+.+++..+| ++..+.
T Consensus 122 ~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 122 GEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred hHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 666778999999999999999999998888877 9999999999999999 666544
No 404
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.07 E-value=68 Score=36.23 Aligned_cols=71 Identities=23% Similarity=0.389 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCc
Q 002100 489 IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENK 568 (967)
Q Consensus 489 ~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 568 (967)
-++..+|.|++...|++..|++.+..+--... + +|. +.-+-....+++.|.+|+.+++
T Consensus 122 YFSligLlRvh~LLGDY~~Alk~l~~idl~~~--~-l~~-------------------~V~~~~is~~YyvGFaylMlrR 179 (404)
T PF10255_consen 122 YFSLIGLLRVHCLLGDYYQALKVLENIDLNKK--G-LYT-------------------KVPACHISTYYYVGFAYLMLRR 179 (404)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHhhccCcccc--h-hhc-------------------cCcchheehHHHHHHHHHHHHH
Confidence 46788999999999999999998876522110 0 111 1223466789999999999999
Q ss_pred HHHHHHHHHHHhc
Q 002100 569 LAAAITEINRIIG 581 (967)
Q Consensus 569 ~~~A~~~~~~al~ 581 (967)
|.+|++.|..++-
T Consensus 180 Y~DAir~f~~iL~ 192 (404)
T PF10255_consen 180 YADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999873
No 405
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.92 E-value=7.5 Score=32.37 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=44.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 887 YRAAVLMDDHKEAEAIAELSRAIAFKPDLQ----LLHLRAAFHDSMGDHLHTQRDCEAALCL 944 (967)
Q Consensus 887 ~la~~~~~~g~~~eAi~~~~kal~~~p~~~----~~~~~a~~~~~~g~~~~A~~~~~~al~~ 944 (967)
..|.-++..++.++|+..++++++..++++ ++-.+..+|...|+|.+++++--+=+++
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556678899999999999999888743 6666788899999999988776554443
No 406
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=81.83 E-value=1.2 Score=47.38 Aligned_cols=10 Identities=20% Similarity=0.052 Sum_probs=3.9
Q ss_pred HHHHHHHHHh
Q 002100 306 VEAMRAAEEF 315 (967)
Q Consensus 306 ~~~~~~~l~~ 315 (967)
+.+.+..+.+
T Consensus 335 ~~aver~v~h 344 (494)
T KOG1456|consen 335 AYAVERAVTH 344 (494)
T ss_pred HHHHHHHHHH
Confidence 3333444433
No 407
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.81 E-value=13 Score=43.27 Aligned_cols=103 Identities=15% Similarity=-0.002 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHH
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAV 666 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~ 666 (967)
..+.+-|.-.++..+|..+++.|...+..-|.+............+..+|..++|.+.| +++
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A------------------~E~ 416 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNA------------------VEV 416 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHH------------------HHH
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 002100 667 VHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNY 707 (967)
Q Consensus 667 ~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~ 707 (967)
+..+-+.+|.++.-.+.........+.-++|+.+.......
T Consensus 417 ~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 417 YQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
No 408
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=81.73 E-value=58 Score=37.57 Aligned_cols=129 Identities=17% Similarity=0.022 Sum_probs=72.2
Q ss_pred HHHhcCcHHHHHHHHHHHhccCC--ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHh
Q 002100 562 LLVEENKLAAAITEINRIIGFKV--SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLV 639 (967)
Q Consensus 562 ~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~ 639 (967)
.....+++++++...... .+-| ..+-....+..+.++|-++.|+...+ +|+ .. =.+....
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~-----D~~---~r---------FeLAl~l 331 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT-----DPD---HR---------FELALQL 331 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------HH---HH---------HHHHHHC
T ss_pred HHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC-----ChH---HH---------hHHHHhc
Confidence 344567888877766422 2223 34556667777888888888876432 232 22 1223444
Q ss_pred hchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHH
Q 002100 640 QQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEG 719 (967)
Q Consensus 640 ~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg 719 (967)
|+.+.| ++ +....+++..|.++|...+.+|+++-|..+|+++- -+..+.
T Consensus 332 g~L~~A------------------~~-----~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~ 380 (443)
T PF04053_consen 332 GNLDIA------------------LE-----IAKELDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLL 380 (443)
T ss_dssp T-HHHH------------------HH-----HCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHH
T ss_pred CCHHHH------------------HH-----HHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccH
Confidence 555555 11 11223456789999999999999999999988752 344566
Q ss_pred HHHHHcCChHHHHHHHHHHH
Q 002100 720 WILYDTGHREEALAKAEESI 739 (967)
Q Consensus 720 ~~~~~~g~~~eA~~~~~~al 739 (967)
.+|...|+.+.=.+..+.+.
T Consensus 381 lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 381 LLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 77778888765555555554
No 409
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=81.04 E-value=2.1 Score=44.43 Aligned_cols=86 Identities=12% Similarity=0.136 Sum_probs=60.1
Q ss_pred ccEEEEEcCeEEEehhHHHhccCH-HHHHhhcCCCCC---CccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHHHHHH
Q 002100 256 WDMSFCIGNDEIRCVRYKIASLSR-PFRTMLYGGFIE---SRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLVLE 331 (967)
Q Consensus 256 ~Dv~~~v~~~~~~~hr~vLa~~S~-~F~~~~~~~~~e---~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~ 331 (967)
--+|..|++..|-+.+.+|-+.-. -.-.||.+++.- +...+.++.+ ||+..+|+++|+|--||.+--.+.-.|.+
T Consensus 96 ~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAd-Gi~s~vFRAILdYYksG~iRCP~~vSvpE 174 (438)
T KOG3840|consen 96 DKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVAD-GMTSSCFRAILDYYQSGTMRCPSSVSVSE 174 (438)
T ss_pred cceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhc-chhHHHHHHHHHHHhcCceeCCCCCchHH
Confidence 357788899999999888855422 246778776542 3345788875 89999999999999999883222334566
Q ss_pred HHHHhchhChH
Q 002100 332 LLSFANRFCCE 342 (967)
Q Consensus 332 ll~~A~~~~~~ 342 (967)
|-.+.|+++|+
T Consensus 175 LrEACDYLlip 185 (438)
T KOG3840|consen 175 LREACDYLLVP 185 (438)
T ss_pred HHhhcceEEee
Confidence 66666666554
No 410
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.64 E-value=6.2 Score=39.67 Aligned_cols=68 Identities=24% Similarity=0.220 Sum_probs=37.4
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 002100 891 VLMDDHKEAEAIAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKA 958 (967)
Q Consensus 891 ~~~~~g~~~eAi~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~ 958 (967)
.+.+.+...+|+...+.-++-+|... ..+.+-.++.-.|+|++|+..++-+-++.|++....++|..+
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~l 78 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHL 78 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 34445555566665555555555532 344445555555666666666666666666655555555443
No 411
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.46 E-value=47 Score=36.95 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=22.1
Q ss_pred HHHHHHhhccCCCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCC
Q 002100 868 KSDLSMATQLDPMRTYPYRYRAAVLMDDH--KEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 868 ~~~l~~al~l~p~~~~~~~~la~~~~~~g--~~~eAi~~~~kal~~~p~ 914 (967)
+.....+++.+|+...+|+.+.+++.+.+ ++..=+...+++++.+|.
T Consensus 95 L~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~R 143 (421)
T KOG0529|consen 95 LKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPR 143 (421)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcc
Confidence 33444444455555555555555554442 234444445555555544
No 412
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=80.40 E-value=4.9 Score=28.06 Aligned_cols=32 Identities=25% Similarity=0.135 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHhcCHHHHHHH--HHHHHHhCCC
Q 002100 587 DCLELRAWISIALEDYDGALRD--VRALLTLDPS 618 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~--~~~al~l~p~ 618 (967)
+.++.+|..+..+|++++|+.. |+-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4566667777777777777777 4466666554
No 413
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=80.37 E-value=43 Score=38.60 Aligned_cols=101 Identities=11% Similarity=-0.028 Sum_probs=65.1
Q ss_pred HHhcccHHHHHHHHHH--HhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHH-ccCChHHHHHHHH
Q 002100 796 YVDCEKLDLAADCYMN--ALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS-EYCDRDMAKSDLS 872 (967)
Q Consensus 796 ~~~~g~~~~A~~~~~~--Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-~~~~~~~A~~~l~ 872 (967)
....++++++....+. .+..=|..-...++..+.++|.++.|+..- .++..-+.++ ..|+.+.|.+..+
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLAl~lg~L~~A~~~a~ 342 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELALQLGNLDIALEIAK 342 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHHHHCT-HHHHHHHCC
T ss_pred HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHHHhcCCHHHHHHHHH
Confidence 3567888887777752 222223456778888999999999887763 3445556666 3578887766532
Q ss_pred HhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002100 873 MATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAI 909 (967)
Q Consensus 873 ~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal 909 (967)
..+++..|..+|.+.+.+|+++-|.++|+++-
T Consensus 343 -----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 343 -----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp -----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred -----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 23467799999999999999999999998773
No 414
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.14 E-value=26 Score=38.71 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHh----Cc-hhHHHHHHHHHHhcCChHH
Q 002100 457 QLAFHQLGVVMLEREEYKDAQNWFKAAVEA----GH-IYSLVGVARTKFKRGHKYS 507 (967)
Q Consensus 457 a~a~~~lG~~~~~~g~y~~A~~~f~~al~~----~~-~~a~~~la~~~~~~g~~~~ 507 (967)
-.++-.+|..|+.-|+++.|+++|-++... .+ ...+..+-++-.-.|+|..
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~h 205 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGH 205 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhh
Confidence 467888999999999999999999997665 12 2333344444444455433
No 415
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=79.94 E-value=54 Score=34.83 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=14.1
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHH
Q 002100 816 KHTRAHQGLARVYHLKNQRKAAYDEM 841 (967)
Q Consensus 816 ~~~~a~~~la~~~~~~g~~~~A~~~~ 841 (967)
+++..|..+|..+++.+++.+|...|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 34456666666666666666665554
No 416
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=79.89 E-value=90 Score=33.82 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=57.0
Q ss_pred CchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---hH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHH
Q 002100 881 RTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD---LQ-LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYD 956 (967)
Q Consensus 881 ~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~---~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~ 956 (967)
++.+-.|++.+..+..-.+.++...+...+. |. +. .+-.+|.++.++|+.++|...|++|+.+.++..+-.-+..
T Consensus 328 SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~-~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 328 SPVVTLNRAVALAMREGPAAGLAMVEALLAR-PRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred CCeEeehHHHHHHHhhhHHhHHHHHHHhhcc-cccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 3555667777777766677777776655433 22 22 4556888999999999999999999999988888777776
Q ss_pred HHHh
Q 002100 957 KATE 960 (967)
Q Consensus 957 r~~~ 960 (967)
++..
T Consensus 407 r~~~ 410 (415)
T COG4941 407 RLDR 410 (415)
T ss_pred HHHH
Confidence 6653
No 417
>COG4371 Predicted membrane protein [Function unknown]
Probab=79.06 E-value=2.2 Score=42.95 Aligned_cols=9 Identities=22% Similarity=0.191 Sum_probs=3.8
Q ss_pred cccchhHHH
Q 002100 140 FEKSGVYLE 148 (967)
Q Consensus 140 ~~~~~~~~~ 148 (967)
-.|+++--|
T Consensus 177 ~Gr~~vlQE 185 (334)
T COG4371 177 AGRARVLQE 185 (334)
T ss_pred chHHHHHHH
Confidence 444444333
No 418
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=78.75 E-value=55 Score=34.19 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCC--ChhHHHHHHHHHHH-hcCHHHHHHHHHHHHHhC
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKV--SPDCLELRAWISIA-LEDYDGALRDVRALLTLD 616 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~-~g~~~~A~~~~~~al~l~ 616 (967)
+..+|.+....++|++.+..+.+++..++ +.+-..++..+|-+ .|....+.+.+.......
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~ 67 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKE 67 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhh
Confidence 56789999999999999999999999988 67777777777743 466666666666655543
No 419
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.70 E-value=2.8 Score=26.72 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH
Q 002100 714 KLVYEGWILYDTGHREEALAKAE 736 (967)
Q Consensus 714 a~~~lg~~~~~~g~~~eA~~~~~ 736 (967)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566666667777776666554
No 420
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.51 E-value=1.3e+02 Score=36.69 Aligned_cols=251 Identities=14% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCch
Q 002100 686 LLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESS 765 (967)
Q Consensus 686 ~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~ 765 (967)
.++.+.+.|+-|+..-+.--.-...-.+.+...|.-++..|++++|...|-+++..-.-.. .....+++...
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~--------Vi~kfLdaq~I 413 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE--------VIKKFLDAQRI 413 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH--------HHHHhcCHHHH
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002100 766 AYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLI 845 (967)
Q Consensus 766 ~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al 845 (967)
.+....|+.+.+.--........+. .+|.++++.++-.++.++.-+-.-..-.-..-.+..+.+-.++|.-.-++.-
T Consensus 414 knLt~YLe~L~~~gla~~dhttlLL---ncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLANSDHTTLLL---NCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred HHHHHHHHHHHHcccccchhHHHHH---HHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc
Q ss_pred HHccCCHHHHHHHHcc-CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 002100 846 EKARNNASAYEKRSEY-CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAF 924 (967)
Q Consensus 846 ~~~p~~~~~~~~~~~~-~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~ 924 (967)
. +.++...+-+- +++++|+.++.. +.|.........=---.-....++-+..+-+.+...-....-......
T Consensus 491 ~----he~vl~ille~~~ny~eAl~yi~s---lp~~e~l~~l~kyGk~Ll~h~P~~t~~ili~~~t~~~~~~~~~~~s~~ 563 (933)
T KOG2114|consen 491 K----HEWVLDILLEDLHNYEEALRYISS---LPISELLRTLNKYGKILLEHDPEETMKILIELITELNSQGKGKSLSNI 563 (933)
T ss_pred c----CHHHHHHHHHHhcCHHHHHHHHhc---CCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhhcCCCCCCchhhcC
Q ss_pred H-------HHcCChHHHHHHHHHHHhcCCCchhHHHH
Q 002100 925 H-------DSMGDHLHTQRDCEAALCLDPNHTDTLEL 954 (967)
Q Consensus 925 ~-------~~~g~~~~A~~~~~~al~~~P~~~~~l~l 954 (967)
- .-.+++..-...++.-.+..|+.++..+.
T Consensus 564 ~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e~~~i 600 (933)
T KOG2114|consen 564 PDSIEFIGIFSQNYQILLNFLESMSEISPDSEEVLEI 600 (933)
T ss_pred ccchhheeeeccCHHHHHHHHHHHHhcCCCchhhhcc
No 421
>PRK11619 lytic murein transglycosylase; Provisional
Probab=78.30 E-value=1.7e+02 Score=35.65 Aligned_cols=126 Identities=7% Similarity=-0.068 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhh
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETL 635 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l 635 (967)
.+.-|.-....|++..+.....++ .-.|- ..|.....+....++. ....+...++..|+.+... .+....
T Consensus 36 ~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL-~~yl~y~~L~~~l~~~--~~~ev~~Fl~~~~~~P~~~------~Lr~~~ 105 (644)
T PRK11619 36 RYQQIKQAWDNRQMDVVEQLMPTL-KDYPL-YPYLEYRQLTQDLMNQ--PAVQVTNFIRANPTLPPAR------SLQSRF 105 (644)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhc-cCCCc-HhHHHHHHHHhccccC--CHHHHHHHHHHCCCCchHH------HHHHHH
Confidence 455666777888888876655543 43441 1122222222222221 2225666777888877665 222222
Q ss_pred HHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 002100 636 QPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS 710 (967)
Q Consensus 636 ~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~ 710 (967)
...+.+-.. -..+.......|.+.......+......|+.++|....+++......
T Consensus 106 l~~La~~~~-------------------w~~~~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~ 161 (644)
T PRK11619 106 VNELARRED-------------------WRGLLAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS 161 (644)
T ss_pred HHHHHHccC-------------------HHHHHHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Confidence 222211000 11111222234666666666777778888888887777766554433
No 422
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=78.11 E-value=6.3 Score=41.98 Aligned_cols=10 Identities=30% Similarity=0.119 Sum_probs=4.8
Q ss_pred hhhccCCCCC
Q 002100 15 SLKIIDGCKG 24 (967)
Q Consensus 15 ~~~~~~~~~~ 24 (967)
..-+.|-|++
T Consensus 32 ~ALL~DI~KG 41 (437)
T KOG4462|consen 32 NALLGDIQKG 41 (437)
T ss_pred HHHHHHhhhc
Confidence 3334455555
No 423
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.09 E-value=85 Score=34.00 Aligned_cols=109 Identities=18% Similarity=0.022 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhcc-------CCCCchHHHHHHHHH
Q 002100 820 AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQL-------DPMRTYPYRYRAAVL 892 (967)
Q Consensus 820 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l-------~p~~~~~~~~la~~~ 892 (967)
.++.+|.-|+..++++.|.-.|+++.+... .|.+.+.++++. ...++..-..++...
T Consensus 127 ~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~----------------~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s 190 (449)
T COG3014 127 INYYKALNYMLLNDSAKARVEFNRANERQR----------------RAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVS 190 (449)
T ss_pred HHHHHHhhHHHhcchhhhHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHH
Confidence 456678888999999999999999887432 333334333321 111222222222211
Q ss_pred HhC-CCHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 002100 893 MDD-HKEAEAIAELSRAIAFKPD---LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNH 948 (967)
Q Consensus 893 ~~~-g~~~eAi~~~~kal~~~p~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~ 948 (967)
.-. ..|.-=...|+ ...+ +-+-+.++.++.-.|++.++.-.+..++-+.|+-
T Consensus 191 ~~i~n~Y~ny~~~ye----a~~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~ 246 (449)
T COG3014 191 EILNNTYSNYLDKYE----AYQGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQ 246 (449)
T ss_pred HHHHHHHHHHHHHHH----hhcccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCchh
Confidence 100 11111111111 1111 2245556777777777788888888777777763
No 424
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.64 E-value=12 Score=31.24 Aligned_cols=61 Identities=25% Similarity=0.239 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHH---HHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 002100 682 FRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEK---LVYEGWILYDTGHREEALAKAEESISIQ 742 (967)
Q Consensus 682 ~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a---~~~lg~~~~~~g~~~eA~~~~~~al~~~ 742 (967)
...|.-++..++.++|+..++++++..++..+. +-.+..+|.+.|+|.+++++.-+-+++.
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A 73 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIA 73 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778899999999999999988776554 4556678889999999998877665443
No 425
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=77.26 E-value=2.5 Score=40.63 Aligned_cols=7 Identities=0% Similarity=0.022 Sum_probs=2.6
Q ss_pred hcCchhh
Q 002100 155 GLSDPKL 161 (967)
Q Consensus 155 ~~~~~~~ 161 (967)
+-|..-+
T Consensus 177 seGe~~y 183 (241)
T KOG0105|consen 177 SEGETAY 183 (241)
T ss_pred CcCcEee
Confidence 3333333
No 426
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.68 E-value=3.7 Score=26.15 Aligned_cols=22 Identities=18% Similarity=-0.078 Sum_probs=11.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHH
Q 002100 918 LHLRAAFHDSMGDHLHTQRDCE 939 (967)
Q Consensus 918 ~~~~a~~~~~~g~~~~A~~~~~ 939 (967)
...+|.++..+|++++|...++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445555555555555555443
No 427
>PRK12798 chemotaxis protein; Reviewed
Probab=76.43 E-value=1.4e+02 Score=33.65 Aligned_cols=236 Identities=14% Similarity=0.050 Sum_probs=147.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCC
Q 002100 685 SLLLLRLNSQKAAMRSLRLARNYSTS-EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPE 763 (967)
Q Consensus 685 g~~~~~~g~~~~A~~~l~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~ 763 (967)
+.+|.-.|-..+.++ ..+..++. +.+.-...|..-|-.|+.++|.+.+...- |...
T Consensus 87 a~iy~lSGGnP~vlr---~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~---~~~l----------------- 143 (421)
T PRK12798 87 ALIYLLSGGNPATLR---KLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVA---PEYL----------------- 143 (421)
T ss_pred HHhhHhcCCCHHHHH---HHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCC---hhhc-----------------
Confidence 334444444333333 33343332 44555566777777899999888776432 2110
Q ss_pred chHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH-----HHHHHHHHHHHhCCHHHHH
Q 002100 764 SSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR-----AHQGLARVYHLKNQRKAAY 838 (967)
Q Consensus 764 ~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~-----a~~~la~~~~~~g~~~~A~ 838 (967)
....+-.+....-......+..+|+..|..+--..|-. ++..--.+....|+.+++.
T Consensus 144 ------------------~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~ 205 (421)
T PRK12798 144 ------------------PAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFE 205 (421)
T ss_pred ------------------CchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHH
Confidence 00111112222333456778999999998886533322 5555555668899999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHcc-------CChHHHHHHHHHhhc-cCCC-CchHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002100 839 DEMTKLIEKARNNASAYEKRSEY-------CDRDMAKSDLSMATQ-LDPM-RTYPYRYRAAVLMDDHKEAEAIAELSRAI 909 (967)
Q Consensus 839 ~~~~~al~~~p~~~~~~~~~~~~-------~~~~~A~~~l~~al~-l~p~-~~~~~~~la~~~~~~g~~~eAi~~~~kal 909 (967)
.+-.+.+......+.+.+.+..+ .+.. -...+...+. ++|. ....|..+|..-.-.|+.+-|...-++++
T Consensus 206 ~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~ 284 (421)
T PRK12798 206 ALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI-RDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERAL 284 (421)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHhccccc-cHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 99999999888877776665522 2111 1122444443 3554 34577778888888999999999999999
Q ss_pred hcCCCh-----HHHHHHHHHHHHcCChHHHHHHHHHHH--hcCCCchhHHHHHHHHHhhh
Q 002100 910 AFKPDL-----QLLHLRAAFHDSMGDHLHTQRDCEAAL--CLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 910 ~~~p~~-----~~~~~~a~~~~~~g~~~~A~~~~~~al--~~~P~~~~~l~l~~r~~~~~ 962 (967)
.+.... .+....+....-..+.++|++.+..+- .+.|.|..+++.-..+-..+
T Consensus 285 ~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~Ll~AA~~va~~V 344 (421)
T PRK12798 285 KLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRALLEAARSVARQV 344 (421)
T ss_pred HhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHHHHHHHHHHHHHH
Confidence 887542 255556777777788999998888764 46677877776555444443
No 428
>TIGR03601 B_an_ocin probable heterocycle-containing bacteriocin, BA_2677 family. Numerous bacteria encode systems for producing bacteriocins by extensive modification of ribosomally produced precursors. These proteins are recognizable in part by proximity to the modification proteins, and in part by small size, with leader peptide-like N-terminal sequence followed by low-complexity sequence rich in Cys, Gly, and/or Ser. This protein family represents a probable member of the class, though previously unrecognized because it is not encoded adjacent to its modification proteins.
Probab=76.10 E-value=2.3 Score=33.44 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=9.8
Q ss_pred hhHHHHHhhhhccC
Q 002100 7 QNFFTTMRSLKIID 20 (967)
Q Consensus 7 ~~~~~~~~~~~~~~ 20 (967)
|+|-..+.+|++-+
T Consensus 2 n~FqqELq~L~lnd 15 (79)
T TIGR03601 2 NQFQQELQSLSLND 15 (79)
T ss_pred cHHHHHHHhccccc
Confidence 56666777787765
No 429
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=75.89 E-value=2.5 Score=42.28 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=25.9
Q ss_pred CCcccccCCCcccHHHHHHHHhhhhcCCC-cccchhHHHHHHHHhhcCchh
Q 002100 111 EPQIEPCLKFVDFVETLADLYRRIEDCPQ-FEKSGVYLEQCAIFRGLSDPK 160 (967)
Q Consensus 111 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 160 (967)
.|.+......||--+.--=...+|+...+ ..-+...+|.|-++-++.|.-
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~ 106 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRD 106 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCC
Confidence 34555555555543322222233444322 455666788888877776654
No 430
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=75.74 E-value=10 Score=40.27 Aligned_cols=63 Identities=16% Similarity=0.082 Sum_probs=54.4
Q ss_pred chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 553 SYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 553 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 615 (967)
..++..++..+...++++.+++.+++.+..+| +...|..+-..|...|+...|+..|+++-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 34566788888889999999999999999999 8888888899999999999999999887664
No 431
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=75.14 E-value=2.1e+02 Score=35.03 Aligned_cols=268 Identities=9% Similarity=-0.048 Sum_probs=121.3
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHH-----HhcCChHHHHHHHHHH
Q 002100 441 MLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTK-----FKRGHKYSAYKLMNSL 515 (967)
Q Consensus 441 ~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~-----~~~g~~~~A~~~l~~~ 515 (967)
..+..+.+....+.++..++..|-.+++..|++++-...=.++-++-|...+.++-.+. ...+...+++.++.++
T Consensus 97 ~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~eka 176 (881)
T KOG0128|consen 97 QEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKA 176 (881)
T ss_pred hHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHH
Confidence 34444455555666777777788888888898887666666666665544455443322 1123344555555555
Q ss_pred HhccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC--------Chh
Q 002100 516 ISDYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV--------SPD 587 (967)
Q Consensus 516 i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~ 587 (967)
+..|.... ++.+...| .+.-+..+...++++.-...|.+++..-- ...
T Consensus 177 l~dy~~v~-iw~e~~~y-----------------------~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we 232 (881)
T KOG0128|consen 177 LGDYNSVP-IWEEVVNY-----------------------LVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWE 232 (881)
T ss_pred hcccccch-HHHHHHHH-----------------------HHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHH
Confidence 55443211 11111111 00111112334555555666666654322 123
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhH-hhhHHHhhchhhHhhHHHHHhhhccccccchHHH
Q 002100 588 CLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLV-ETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAV 666 (967)
Q Consensus 588 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~-~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~ 666 (967)
.|...-..|+..-..++-+..+...+... -+..+.+.--..... -.......+++.+ +..... .+..
T Consensus 233 ~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a------~~~l~~-----~~~~ 300 (881)
T KOG0128|consen 233 MYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDA------LKNLAK-----ILFK 300 (881)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHH------HHHHHH-----HHHH
Confidence 33344444444444455566666555543 222111000000000 0001111111122 000000 1223
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHH-HHcCChHHHHHHHHHHHhcccc
Q 002100 667 VHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWIL-YDTGHREEALAKAEESISIQRS 744 (967)
Q Consensus 667 ~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~-~~~g~~~eA~~~~~~al~~~p~ 744 (967)
+.+.+...|..-..|...-..-...|++-.-...+++++...+.+...|...|..+ ..++-.+.+...+.+++...|-
T Consensus 301 ~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~ 379 (881)
T KOG0128|consen 301 FERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPW 379 (881)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCch
Confidence 33334444443333433334444456665556666777766666666666555332 2344455556666666666663
No 432
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=74.92 E-value=7.3 Score=46.46 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=69.3
Q ss_pred CCchHHHHHHHHHHhC--CCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHH
Q 002100 880 MRTYPYRYRAAVLMDD--HKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYD 956 (967)
Q Consensus 880 ~~~~~~~~la~~~~~~--g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~ 956 (967)
.......+.+.+|+.. ++|..++...+-++...|. ..++..++..|...++.+-|++++.-....+|++.+..+.+.
T Consensus 89 ~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~ 168 (748)
T KOG4151|consen 89 VVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFE 168 (748)
T ss_pred hhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHH
Confidence 3455566677776655 8999999999999999999 458888999999999999999999999999999988888887
Q ss_pred HHHhhh
Q 002100 957 KATERV 962 (967)
Q Consensus 957 r~~~~~ 962 (967)
+++...
T Consensus 169 elk~ll 174 (748)
T KOG4151|consen 169 ELKGLL 174 (748)
T ss_pred HHHHHH
Confidence 777654
No 433
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=74.65 E-value=2.1e+02 Score=34.94 Aligned_cols=267 Identities=11% Similarity=-0.006 Sum_probs=133.9
Q ss_pred CcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhH
Q 002100 567 NKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQA 645 (967)
Q Consensus 567 g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A 645 (967)
+.-++-+..++.-+.+++ +..++..+-.+....|++++-...-++.-++.|..+..|.. .+...++....
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~----Wl~d~~~mt~s----- 163 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLE----WLKDELSMTQS----- 163 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHH----HHHHHHhhccC-----
Confidence 344445556666666666 66666777777777787777766666777777777766632 12222222211
Q ss_pred hhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHH-------HHHhcCHHHHHHHHHHHHhcCCchhHHHHHH
Q 002100 646 DCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLL-------LLRLNSQKAAMRSLRLARNYSTSEHEKLVYE 718 (967)
Q Consensus 646 ~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~-------~~~~g~~~~A~~~l~~al~~~p~~~~a~~~l 718 (967)
.+-......+.+++... ....+|...+.. +...++++.-...|.+++..--..
T Consensus 164 ------------~~~~~v~~~~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~------- 223 (881)
T KOG0128|consen 164 ------------EERKEVEELFEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSH------- 223 (881)
T ss_pred ------------cchhHHHHHHHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhh-------
Confidence 11111244455555432 223333332222 233456666666666666532211
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhH---HH
Q 002100 719 GWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLG---SV 795 (967)
Q Consensus 719 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg---~~ 795 (967)
+-.-+..-++..-|+.+.-. .....+++.+....+.++.+.......|.... ..
T Consensus 224 ---~t~G~~~we~~~E~e~~~l~--------------------n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~ 280 (881)
T KOG0128|consen 224 ---ITEGAAIWEMYREFEVTYLC--------------------NVEQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVY 280 (881)
T ss_pred ---hcccHHHHHHHHHHHHHHHH--------------------hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcchH
Confidence 11101111111111111100 01112334444444444433333333333322 11
Q ss_pred HHhcccHHHHHHHHHH-------HhccCcHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc-----
Q 002100 796 YVDCEKLDLAADCYMN-------ALNIKHTR--AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----- 861 (967)
Q Consensus 796 ~~~~g~~~~A~~~~~~-------Al~~~~~~--a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----- 861 (967)
.....+++.|..-..+ .+...+.. .+..+-.-....|+...-...+++++...+.+...|...+.+
T Consensus 281 ~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eL 360 (881)
T KOG0128|consen 281 DVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTEL 360 (881)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhccccc
Confidence 1233444444444333 33333332 455556666777888888888889999888888888888854
Q ss_pred CChHHHHHHHHHhhccCCCCchHH
Q 002100 862 CDRDMAKSDLSMATQLDPMRTYPY 885 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~~~~ 885 (967)
+-.+.+...+-++++..|-....|
T Consensus 361 kv~~~~~~~~~ra~R~cp~tgdL~ 384 (881)
T KOG0128|consen 361 KVPQRGVSVHPRAVRSCPWTGDLW 384 (881)
T ss_pred ccccccccccchhhcCCchHHHHH
Confidence 444556666777777777655443
No 434
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=73.09 E-value=26 Score=38.85 Aligned_cols=52 Identities=17% Similarity=0.127 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhH
Q 002100 588 CLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQA 645 (967)
Q Consensus 588 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A 645 (967)
+-..+..||+.+++.+.|+....+.+.++|.+..-+ .-.+.+...+++|.+|
T Consensus 230 Ietklv~CYL~~rkpdlALnh~hrsI~lnP~~frnH------LrqAavfR~LeRy~eA 281 (569)
T PF15015_consen 230 IETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNH------LRQAAVFRRLERYSEA 281 (569)
T ss_pred HHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHH------HHHHHHHHHHHHHHHH
Confidence 345677888888888888888888888888877766 4456777777888777
No 435
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=72.69 E-value=66 Score=35.83 Aligned_cols=94 Identities=20% Similarity=0.086 Sum_probs=58.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCC--------CchHHhh--h--hhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccc
Q 002100 593 AWISIALEDYDGALRDVRALLTLDP--------SYMMFYG--Q--LHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDD 660 (967)
Q Consensus 593 a~~~~~~g~~~~A~~~~~~al~l~p--------~~~~~~~--~--~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~ 660 (967)
|..++.+++|..|..-|+.+|++.. ..+..-. . ...+-.+..+|..+++-+.|
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlA--------------- 247 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLA--------------- 247 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchH---------------
Confidence 4445566666666666666666522 1111100 0 00112344555565555555
Q ss_pred cchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 661 IGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLA 704 (967)
Q Consensus 661 ~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~a 704 (967)
+....+.+..+|....-+..++.++..+.+|.+|-+.+--+
T Consensus 248 ---Lnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 248 ---LNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred ---HHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888865443
No 436
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=72.16 E-value=10 Score=26.42 Aligned_cols=30 Identities=17% Similarity=-0.153 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCChHHHHHH--HHHHHhcCCC
Q 002100 918 LHLRAAFHDSMGDHLHTQRD--CEAALCLDPN 947 (967)
Q Consensus 918 ~~~~a~~~~~~g~~~~A~~~--~~~al~~~P~ 947 (967)
++.+|..+..+|++++|+.. |+-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 34445555555555555555 3344444443
No 437
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.98 E-value=89 Score=29.84 Aligned_cols=53 Identities=19% Similarity=0.122 Sum_probs=22.5
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCC
Q 002100 675 PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGH 727 (967)
Q Consensus 675 p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~ 727 (967)
|+.+.+...-|.++...|+|.+|++.|+...+..+..+-..-.++.+++-+|+
T Consensus 41 P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 41 PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 44444444444444444444444444444444443333333334444444443
No 438
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=71.47 E-value=1.1e+02 Score=34.14 Aligned_cols=52 Identities=13% Similarity=0.080 Sum_probs=32.9
Q ss_pred HHHhcccHHHHHHHHHHHhcc---CcH--------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002100 795 VYVDCEKLDLAADCYMNALNI---KHT--------RAHQGLARVYHLKNQRKAAYDEMTKLIE 846 (967)
Q Consensus 795 ~~~~~g~~~~A~~~~~~Al~~---~~~--------~a~~~la~~~~~~g~~~~A~~~~~~al~ 846 (967)
.+..++++.+|..+-+..+.. ... ..|+.+..+|...++...-...+...+.
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lr 197 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLR 197 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 345678999998888776651 111 2566777788888875555555544443
No 439
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=71.44 E-value=8.3 Score=40.74 Aligned_cols=82 Identities=10% Similarity=-0.075 Sum_probs=39.3
Q ss_pred cCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-HHHH-HHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHH
Q 002100 877 LDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ-LLHL-RAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLEL 954 (967)
Q Consensus 877 l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~-~~~~-~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l 954 (967)
.-|+++..|...+.-..+.+-|.+--..|.++++.+|.+. .|.. -+.-+...++.+.+...+.++|.++|.+|.++-.
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 3444555555444444444555555555555555555532 2222 2223344455555555555555555555555444
Q ss_pred HHHH
Q 002100 955 YDKA 958 (967)
Q Consensus 955 ~~r~ 958 (967)
|-|+
T Consensus 182 yfr~ 185 (435)
T COG5191 182 YFRM 185 (435)
T ss_pred HHHH
Confidence 4443
No 440
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.26 E-value=1.5e+02 Score=37.48 Aligned_cols=133 Identities=17% Similarity=0.086 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHh-CchhHHHHHHHHHH--------hcCChH----HHHHHHHHHHhccCc
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEA-GHIYSLVGVARTKF--------KRGHKY----SAYKLMNSLISDYTP 521 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~-~~~~a~~~la~~~~--------~~g~~~----~A~~~l~~~i~~~~~ 521 (967)
.+....+.+|.+|+..|+..+|+.+|.+|..- +...++.. .++. ..|+.- .|..+|.+++..+
T Consensus 918 lk~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~--lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rll-- 993 (1480)
T KOG4521|consen 918 LKPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRK--LVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLL-- 993 (1480)
T ss_pred hHHHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHH--HHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHH--
Confidence 33445677899999999999999999999986 33333333 2333 344432 3455555554422
Q ss_pred chhHHHHHhhcCChHHHHHHHHHhHhhCCCC----chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC----ChhHHHHHH
Q 002100 522 VGWMYQERSLYCSGKEKMMDLNTATELDPTL----SYPYKYRAILLVEENKLAAAITEINRIIGFKV----SPDCLELRA 593 (967)
Q Consensus 522 ~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la 593 (967)
..++-.+.+++.-.+||+.-|++ +..+...=..+...|.+-+|.+.+- .+| ..+++..+-
T Consensus 994 --------e~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~----~npdserrrdcLRqlv 1061 (1480)
T KOG4521|consen 994 --------EEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL----RNPDSERRRDCLRQLV 1061 (1480)
T ss_pred --------HHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH----cCCcHHHHHHHHHHHH
Confidence 22334477777777777654433 3334444555667788888765543 344 355777777
Q ss_pred HHHHHhcCHH
Q 002100 594 WISIALEDYD 603 (967)
Q Consensus 594 ~~~~~~g~~~ 603 (967)
.+.++.|+++
T Consensus 1062 ivLfecg~l~ 1071 (1480)
T KOG4521|consen 1062 IVLFECGELE 1071 (1480)
T ss_pred HHHHhccchH
Confidence 7777777664
No 441
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.13 E-value=14 Score=27.17 Aligned_cols=24 Identities=21% Similarity=-0.032 Sum_probs=14.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh
Q 002100 920 LRAAFHDSMGDHLHTQRDCEAALC 943 (967)
Q Consensus 920 ~~a~~~~~~g~~~~A~~~~~~al~ 943 (967)
.+|..|..+||++.|...+++++.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 456666666666666666666663
No 442
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=70.88 E-value=4.7 Score=40.96 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=5.8
Q ss_pred HHhHhhHhhhh
Q 002100 179 KIVLAAWLRFE 189 (967)
Q Consensus 179 ~~~~~~w~~~~ 189 (967)
||=+.-|-.|.
T Consensus 128 kvEyRVWnPfr 138 (317)
T KOG1596|consen 128 KVEYRVWNPFR 138 (317)
T ss_pred cEEEEEeChHH
Confidence 44445565554
No 443
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=70.78 E-value=32 Score=36.70 Aligned_cols=62 Identities=8% Similarity=-0.017 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESIS 740 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 740 (967)
.++..++..+...++++.++..+++.+..+|-+-..|..+-..|+..|+...|+..|++.-+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34556777788889999999999999999999999999999999999999999999988764
No 444
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.26 E-value=16 Score=36.83 Aligned_cols=53 Identities=19% Similarity=0.100 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch
Q 002100 897 KEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHT 949 (967)
Q Consensus 897 ~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~ 949 (967)
..+..++..++.+...|++..+..++.++..+|+.++|.+..+++..+.|.+.
T Consensus 126 ~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~ 178 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPADE 178 (193)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHH
Confidence 34556677788889999999999999999999999999999999999999443
No 445
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=69.80 E-value=6.3 Score=41.60 Aligned_cols=83 Identities=7% Similarity=-0.014 Sum_probs=62.5
Q ss_pred HHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHH-HHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002100 541 DLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLEL-RAWISIALEDYDGALRDVRALLTLDPS 618 (967)
Q Consensus 541 ~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~-la~~~~~~g~~~~A~~~~~~al~l~p~ 618 (967)
.|.++....|+++..|...+.--...+-|.+--..|.+++...| +.+.|.. -+.-+...++++.+...+.+++.++|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 34455566778887777777777777778888888888888888 7776655 445566678888888888888888888
Q ss_pred chHHh
Q 002100 619 YMMFY 623 (967)
Q Consensus 619 ~~~~~ 623 (967)
++..|
T Consensus 175 ~p~iw 179 (435)
T COG5191 175 SPRIW 179 (435)
T ss_pred CchHH
Confidence 88777
No 446
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=68.84 E-value=19 Score=38.52 Aligned_cols=61 Identities=18% Similarity=0.109 Sum_probs=51.1
Q ss_pred HHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHH
Q 002100 538 KMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIA 598 (967)
Q Consensus 538 A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~ 598 (967)
|..+|.+|+.+.|.+..+|..+|.++...|+.=.|+=.|-+++-... .+.+..++..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999886544 77788888877766
No 447
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=68.43 E-value=6.5 Score=44.26 Aligned_cols=7 Identities=29% Similarity=0.857 Sum_probs=3.4
Q ss_pred ccEEEEE
Q 002100 256 WDMSFCI 262 (967)
Q Consensus 256 ~Dv~~~v 262 (967)
.=|+|++
T Consensus 246 ~AVv~~l 252 (421)
T PF04285_consen 246 NAVVFCL 252 (421)
T ss_pred cEEEEEE
Confidence 3455554
No 448
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=68.34 E-value=12 Score=38.04 Aligned_cols=98 Identities=15% Similarity=0.010 Sum_probs=62.8
Q ss_pred CcccEE-EEEcCeEEEehhHHH-hccCHHHHHhhcCCCC--CCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCH--H
Q 002100 254 EDWDMS-FCIGNDEIRCVRYKI-ASLSRPFRTMLYGGFI--ESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDP--R 327 (967)
Q Consensus 254 ~~~Dv~-~~v~~~~~~~hr~vL-a~~S~~F~~~~~~~~~--e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~--~ 327 (967)
.+.|+. +-|||..+..-..-| +-.-....+||++... .+......|. =+-..|+-||+|+.|..+ .++. .
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fID---RDG~lFRyvL~~LRt~~l-~lpe~f~ 81 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFID---RDGFLFRYVLDYLRTKAL-LLPEDFA 81 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEEc---CCcchHHHHHHHhccccc-ccchhhh
Confidence 455655 457886665443323 2223345667776322 2223355564 366889999999999666 4555 5
Q ss_pred HHHHHHHHhchhChHHHHHHHHHHHHhh
Q 002100 328 LVLELLSFANRFCCEELKSACDSYLASM 355 (967)
Q Consensus 328 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 355 (967)
++..|..-|++|+++.+...+.+.....
T Consensus 82 e~~~L~rEA~f~~l~~~~~~l~~~~~~~ 109 (221)
T KOG2723|consen 82 EVERLVREAEFFQLEAPVTYLLNSGQID 109 (221)
T ss_pred hHHHHHHHHHHHccccHHHHHhcccccc
Confidence 7889999999999998876665544333
No 449
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=67.32 E-value=11 Score=40.84 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILY 723 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~ 723 (967)
+..-..+++.++....++++++..+....++++|++.++.+....|++......+..+-.
T Consensus 295 ~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 295 RFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred eeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 333344555777888888999999999999999999999999999988766555444433
No 450
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=66.76 E-value=12 Score=24.59 Aligned_cols=31 Identities=23% Similarity=0.190 Sum_probs=23.0
Q ss_pred CChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 002100 929 GDHLHTQRDCEAALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 929 g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~ 959 (967)
|+.+.|...|++++...|.++.++..+.+.+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4677788888888888888887777666554
No 451
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.31 E-value=1.9e+02 Score=31.50 Aligned_cols=45 Identities=4% Similarity=0.007 Sum_probs=30.1
Q ss_pred cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHH
Q 002100 815 IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS 859 (967)
Q Consensus 815 ~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 859 (967)
...+++-+..+..+...+++.++...+..+.-+.|+........+
T Consensus 210 l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~~qY~ 254 (449)
T COG3014 210 LLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPFVAQYL 254 (449)
T ss_pred cchHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHHHHHhc
Confidence 445556666666777777888888888887777777555444443
No 452
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=65.57 E-value=5.3 Score=35.43 Aligned_cols=10 Identities=0% Similarity=0.524 Sum_probs=5.2
Q ss_pred hhhchhhHHH
Q 002100 2 FVKMQQNFFT 11 (967)
Q Consensus 2 ~~~~~~~~~~ 11 (967)
|+|++.+++.
T Consensus 68 ylri~d~iid 77 (134)
T KOG3293|consen 68 YLRIPDEIID 77 (134)
T ss_pred EEeccHHHHH
Confidence 4455555553
No 453
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=65.52 E-value=3.9e+02 Score=34.29 Aligned_cols=55 Identities=16% Similarity=0.087 Sum_probs=28.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHH----------hcCCchhHHH---HHHHHHHHHcCChHHHHHHHHHHH
Q 002100 685 SLLLLRLNSQKAAMRSLRLAR----------NYSTSEHEKL---VYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 685 g~~~~~~g~~~~A~~~l~~al----------~~~p~~~~a~---~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
+..|.+.|+.++|+.+|+.+. ++.+...+.. ..+..-+..++++-+|-+...+.+
T Consensus 959 al~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 455666666666666655432 2223322222 344555556666666666665554
No 454
>PTZ00110 helicase; Provisional
Probab=64.42 E-value=6.1 Score=47.08 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=9.5
Q ss_pred HhhHhhhhhhhhhhcccccccCCc
Q 002100 182 LAAWLRFERREDELIGTSAMDCCG 205 (967)
Q Consensus 182 ~~~w~~~~~~~~e~~~~~~~~~~~ 205 (967)
..+|....+. ..++.....-+|+
T Consensus 158 ~~aip~~l~G-~dvI~~ApTGSGK 180 (545)
T PTZ00110 158 VQGWPIALSG-RDMIGIAETGSGK 180 (545)
T ss_pred HHHHHHHhcC-CCEEEEeCCCChH
Confidence 3445444433 3444444444343
No 455
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=64.15 E-value=37 Score=32.23 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=41.6
Q ss_pred HHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhhhc
Q 002100 908 AIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVNEQ 965 (967)
Q Consensus 908 al~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~~~ 965 (967)
.++.--..+....++.-.+..|++.-|......++..+|+|.++..+...+-++...+
T Consensus 63 ~v~l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 63 YVELAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 3444445566677788888888888888888888888888888888888777766543
No 456
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=63.91 E-value=71 Score=32.49 Aligned_cols=63 Identities=19% Similarity=0.138 Sum_probs=54.9
Q ss_pred HHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 561 ILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
..+.+.+..++|+...+.-++.+| +......+-.++.-.|+|++|...++-+-++.|++..-.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a 72 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGA 72 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHH
Confidence 456777889999999999999999 888888888999999999999999999999999876544
No 457
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.14 E-value=13 Score=27.26 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHhc
Q 002100 557 KYRAILLVEENKLAAAITEINRIIG 581 (967)
Q Consensus 557 ~~la~~~~~~g~~~~A~~~~~~al~ 581 (967)
+.+|..|+.+|+++.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566666667777777766666663
No 458
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=62.95 E-value=2.6e+02 Score=31.34 Aligned_cols=132 Identities=15% Similarity=0.072 Sum_probs=85.0
Q ss_pred HHHHhcCHHHHHHHHHHHHhc-CCc--------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhh
Q 002100 687 LLLRLNSQKAAMRSLRLARNY-STS--------EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALAD 757 (967)
Q Consensus 687 ~~~~~g~~~~A~~~l~~al~~-~p~--------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~ 757 (967)
.+..++++++|.+.-+..+.. .-. .+..|+++..++...|+...-...+..-+.... |
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAt-----------L-- 201 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTAT-----------L-- 201 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh-----------h--
Confidence 344568888888765554332 111 234566677777777774444433333221110 0
Q ss_pred cCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc----H--HHHHHHHHHHHHh
Q 002100 758 SSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH----T--RAHQGLARVYHLK 831 (967)
Q Consensus 758 ~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~----~--~a~~~la~~~~~~ 831 (967)
. .+....+...+.+-..|...+.|+.|...-.++.-+.. . +.++.+|++..-+
T Consensus 202 -r--------------------hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiq 260 (493)
T KOG2581|consen 202 -R--------------------HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQ 260 (493)
T ss_pred -c--------------------CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhh
Confidence 0 01112334566677888999999999998888775332 1 2677799999999
Q ss_pred CCHHHHHHHHHHHHHHccCCH
Q 002100 832 NQRKAAYDEMTKLIEKARNNA 852 (967)
Q Consensus 832 g~~~~A~~~~~~al~~~p~~~ 852 (967)
.+|..|.+++-+++.+.|+..
T Consensus 261 ldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 261 LDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred cchhHHHHHHHHHHHhCcchh
Confidence 999999999999999999743
No 459
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=62.94 E-value=22 Score=38.03 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=45.5
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CChHHHHHHHHHHHH
Q 002100 867 AKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFK-PDLQLLHLRAAFHDS 927 (967)
Q Consensus 867 A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~-p~~~~~~~~a~~~~~ 927 (967)
|..+|.+|+.+.|....+|..+|.++...|+.-+|+-+|-+++-.. |-+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 5678888888888899999999988888889889998888888543 334566676666666
No 460
>KOG3570 consensus MAPK-activating protein DENN [Signal transduction mechanisms]
Probab=60.76 E-value=10 Score=45.08 Aligned_cols=18 Identities=33% Similarity=0.565 Sum_probs=10.8
Q ss_pred ccHHHHHHHHhhhhcCCC
Q 002100 122 DFVETLADLYRRIEDCPQ 139 (967)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~ 139 (967)
.+.+.|=-+-+.+.+|+.
T Consensus 188 tFrecL~~LKrliD~cne 205 (1588)
T KOG3570|consen 188 TFRECLYTLKRLVDCCSE 205 (1588)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 345566566666667654
No 461
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=60.24 E-value=56 Score=27.20 Aligned_cols=24 Identities=13% Similarity=-0.108 Sum_probs=12.0
Q ss_pred HHHhHHHHHhcccHHHHHHHHHHH
Q 002100 789 LNNLGSVYVDCEKLDLAADCYMNA 812 (967)
Q Consensus 789 ~~~lg~~~~~~g~~~~A~~~~~~A 812 (967)
+...+.-+-..|++.+|+.+|+++
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~a 32 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKA 32 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 334444455555555555555433
No 462
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=59.92 E-value=1.3e+02 Score=28.00 Aligned_cols=42 Identities=12% Similarity=-0.046 Sum_probs=32.7
Q ss_pred HHHHHHHHHhc----cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002100 804 LAADCYMNALN----IKHTRAHQGLARVYHLKNQRKAAYDEMTKLI 845 (967)
Q Consensus 804 ~A~~~~~~Al~----~~~~~a~~~la~~~~~~g~~~~A~~~~~~al 845 (967)
.+.+.|..... ......|..-|..+...|++++|.+.|+.+|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 77777777665 3345578889999999999999999998765
No 463
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=59.21 E-value=27 Score=36.84 Aligned_cols=58 Identities=17% Similarity=-0.005 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALL 613 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al 613 (967)
+...+..|...|.+.+|++..++++..+| +.+.+..+-.++..+||--.|+..|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34457788899999999999999999999 88899999999999999888888887653
No 464
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=58.82 E-value=41 Score=36.10 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred hhhHHHHHhhhhccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCccccccccccccC
Q 002100 6 QQNFFTTMRSLKIIDGCKGTQVFAINPSGPPAGGGGSAGGGGGGGGGGGG---GGGSSVGEKLLNHLQDHLRVNSIRSKS 82 (967)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (967)
.|-++..|+--+-+.-......+|-..++.-+++|++++|+||+|.||++ |-||--.+|.....+...+-++..+.+
T Consensus 31 R~ALL~DI~KG~KLKK~~tNDRSAPivgk~vgs~g~~~~~~~G~s~g~~~~p~~lGglfagG~pkLk~~~n~d~~~~~~~ 110 (437)
T KOG4462|consen 31 RNALLGDIQKGKKLKKATTNDRSAPIVGKGVGSSGSSSNSNGGKSFGAPPVPPGLGGLFAGGMPKLKPSSNNDSTKPSPS 110 (437)
T ss_pred hHHHHHHhhhcceecceeccccccccccCcccccCccCcCCCCCccCCCCCCCcccchhccCccccccccccccccCCCC
Q ss_pred CCCCCCCCCCcccccccCCCCCCcccc
Q 002100 83 NRSYQMPVQAPVVIESVLPYGLPITDL 109 (967)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (967)
.-...-|...+++...-.+.+.....+
T Consensus 111 ~palpipg~~~sa~~~p~psas~~p~v 137 (437)
T KOG4462|consen 111 APALPIPGRRATAQAPPPPSASGAPAV 137 (437)
T ss_pred cccCCCCcccccccCCCCCCCCCCCCC
No 465
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=58.79 E-value=18 Score=39.23 Aligned_cols=74 Identities=26% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHHHHhhhhccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccC
Q 002100 9 FFTTMRSLKIIDGCKGTQVFAINPSGPPAGGGGSAGGGGGGGGGGGGGGGSSVGEKLLNHLQDHLRVNSIRSKS 82 (967)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (967)
||-.+-.+-|-.-|.+.......+.....+.+++|||||||+|++.++..+..........+......+..+..
T Consensus 163 i~l~vla~ivY~~~~~~~~~~~~~~~~~~~~~~~gggggGGgg~~~~~~~~PPPPyfks~~~~~~~~~~~p~~~ 236 (318)
T PF06682_consen 163 IFLLVLAFIVYSLFLSCGQNRRGPRGGRPGRGGGGGGGGGGGGGGWGGYPDPPPPYFKSDFPGPQGPGAGPSSG 236 (318)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCcc
No 466
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=58.51 E-value=2.4e+02 Score=32.39 Aligned_cols=167 Identities=13% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhch-h------hHhhHHHHHhhhcccccc
Q 002100 589 LELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQW-S------QADCWMQLYDRWSSVDDI 661 (967)
Q Consensus 589 ~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~-~------~A~~~~~l~~~~~~~d~~ 661 (967)
...+|.+++-++||+.|...|+.+.+-.-++.....--.+..+.++.....+.- . ..+.++ +
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~l-----------e 279 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYL-----------E 279 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHH-----------H
Q ss_pred chHHHHHH----HHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCc---hhHHHHHHHHHH--HHcCCh
Q 002100 662 GSLAVVHH----MLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNY----STS---EHEKLVYEGWIL--YDTGHR 728 (967)
Q Consensus 662 ~al~~~~~----~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~----~p~---~~~a~~~lg~~~--~~~g~~ 728 (967)
.|...|.+ -..............+.++...+.+.+|...+-+.... +-. .+-.+-..|.++ ......
T Consensus 280 ~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~ 359 (414)
T PF12739_consen 280 NAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRP 359 (414)
T ss_pred HHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCC
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHH
Q 002100 729 EEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADC 808 (967)
Q Consensus 729 ~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~ 808 (967)
..-...+.|+- .-+..-|.-|...|+...|+.+
T Consensus 360 ~~~~~r~RK~a-----------------------------------------------f~~vLAg~~~~~~~~~~~a~rc 392 (414)
T PF12739_consen 360 SPGLTRFRKYA-----------------------------------------------FHMVLAGHRYSKAGQKKHALRC 392 (414)
T ss_pred CccchhhHHHH-----------------------------------------------HHHHHHHHHHHHCCCHHHHHHH
Q ss_pred HHHHh
Q 002100 809 YMNAL 813 (967)
Q Consensus 809 ~~~Al 813 (967)
|.+|+
T Consensus 393 y~~a~ 397 (414)
T PF12739_consen 393 YKQAL 397 (414)
T ss_pred HHHHH
No 467
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=58.17 E-value=1.9e+02 Score=35.00 Aligned_cols=242 Identities=12% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHhHcCCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhh------HHHHHHHHHHhChHHHHHHHH
Q 002100 309 MRAAEEFSRTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIED------AVMLIEYGLEEAAYLLVAACL 382 (967)
Q Consensus 309 ~~~~l~~~Yt~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n------~~~~~~~A~~~~~~~L~~~c~ 382 (967)
|+..++|+|. . +....+..++-.+-+.|++-+....-..-|...-. .+ +-.|..+...+...+-.+++.
T Consensus 274 FE~AI~~L~~--~-~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~--~~~~~ln~arLI~~Y~~~F~~td~~~Al~ 348 (613)
T PF04097_consen 274 FEAAIEFLYR--N-EFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDP--GDPPPLNFARLIGQYTRSFEITDPREALQ 348 (613)
T ss_dssp HHHHHHHHHT-----T-HHHHHHHHHHHHHTT--------------------------HHHHHHHHHHTTTTT-HHHHHH
T ss_pred HHHHHHHHHh--h-ccCcccHHHHHHHHHHcCCCCCCCccccceeeecC--CCCCCcCHHHHHHHHHHHHhccCHHHHHH
Q ss_pred HHHh-hhhhhcCCchhHhhhhccchHHHHHHhhcchHHHHHHHHHHhccCcccccchHHHHHHHHHHHhhhchHHHHHHH
Q 002100 383 QVLL-RELPCSMQNPNVMRIFCSAEARERLAMVGHASFVLYYFLSQIGMEEDMKSNTTVMLLERLVESATESWQKQLAFH 461 (967)
Q Consensus 383 ~~i~-~~~~~~l~~~~~~~ll~s~~~~~r~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~ll~~l~~~~~~~~~~a~a~~ 461 (967)
-|++ ..+...-...-+.+.++.--+. ..-|..++..+..+ ..+.....+--..+..+............
T Consensus 349 Y~~li~~~~~~~~~~l~~~~l~eLvle---------tref~~LLG~i~~d-G~r~~G~i~~~~~Li~~~~~~~~~~~i~~ 418 (613)
T PF04097_consen 349 YLYLICLFKDPEQRNLFHECLRELVLE---------TREFDLLLGDINPD-GSRTPGLIERRLSLIKFDDDEDFLREIIE 418 (613)
T ss_dssp HHHGGGGS-SCCHHHHHHHHHHHHHHH---------H--HHHHHEEE-TT-S-EEE-HHHHTGGGGT-SSSSHHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHc---------cCCHHHHCCCCCCC-CccccceeeccccccCCCCcHHHHHHHHH
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhCc--hhHHHHHHHHHHhcCC-------hHHHHHHHHHHHhccCcchhHHHHHhhc
Q 002100 462 QLGVVMLEREEYKDAQNWFKAAVEAGH--IYSLVGVARTKFKRGH-------KYSAYKLMNSLISDYTPVGWMYQERSLY 532 (967)
Q Consensus 462 ~lG~~~~~~g~y~~A~~~f~~al~~~~--~~a~~~la~~~~~~g~-------~~~A~~~l~~~i~~~~~~g~~~~~~~~y 532 (967)
..|...-.+|++++|+..|.-|-+.+. ......|+.+...... ...-...-..+.+.|...+..+....
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~-- 496 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVS-- 496 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS---
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhcc--
Q ss_pred CChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHH
Q 002100 533 CSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRI 579 (967)
Q Consensus 533 ~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 579 (967)
......+...+.+ ....-++..|+|++|++.+++.
T Consensus 497 ---~~~~~t~~~Ll~L---------~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 497 ---RKNRETFQLLLDL---------AEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp ---HHHHHHHHHHHHH---------HHHHHHHHTT-HHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHH---------HHHHHHHHcCCHHHHHHHHHhC
No 468
>PRK05325 hypothetical protein; Provisional
Probab=57.97 E-value=9.6 Score=42.60 Aligned_cols=30 Identities=53% Similarity=1.044 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC------------CCCCCCCCCCCCCCCC
Q 002100 34 GPPAGGGGSAGGGG------------GGGGGGGGGGGSSVGE 63 (967)
Q Consensus 34 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 63 (967)
+..+..++-|.|.| |||+|+|.|+|+|.|.
T Consensus 54 g~~~~~~~Vg~Gn~~~~~GD~i~rp~g~g~G~G~~~~~geGe 95 (401)
T PRK05325 54 GRGGKREGVGPGNGEFVVGDRIGRPQGGGGGGGQGGGDGEGE 95 (401)
T ss_pred CCCCCCCccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCc
No 469
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=57.30 E-value=2.5e+02 Score=29.45 Aligned_cols=199 Identities=11% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhh-hhhhH-hhhHHHhhchhhHhhHHHHHhhhccccccchHH
Q 002100 588 CLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLH-GDNLV-ETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLA 665 (967)
Q Consensus 588 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~-~~~~~-~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~ 665 (967)
.-+.+-.+++..|+..+|+..+++-+....+-....+.-. ..+.. +-...+ ..
T Consensus 12 i~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq-------------------------~~ 66 (247)
T PF11817_consen 12 IAFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQ-------------------------YQ 66 (247)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHH-------------------------HH
Q ss_pred HHHHHHhcCC----------CChHHHHHHHHHHHHhcCHHHHH--------------HHHHHHHh-cCCchhHHHHHHHH
Q 002100 666 VVHHMLANDP----------GKSLLRFRQSLLLLRLNSQKAAM--------------RSLRLARN-YSTSEHEKLVYEGW 720 (967)
Q Consensus 666 ~~~~~l~~~p----------~~~~~~~~~g~~~~~~g~~~~A~--------------~~l~~al~-~~p~~~~a~~~lg~ 720 (967)
.+-+.++..+ .-...+...+.........-+++ ..+..-.- ..|...+.+.....
T Consensus 67 ~fAeL~~~~~~~~l~~~~~~~pG~yy~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (247)
T PF11817_consen 67 VFAELLEEAPISGLTPPSTQHPGFYYQIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQS 146 (247)
T ss_pred HHHHHHHhcccccCCCCCCCCcchHHHHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhc
Q ss_pred HHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcc
Q 002100 721 ILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCE 800 (967)
Q Consensus 721 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g 800 (967)
.......-...+..+++|++...... ...........+|..|+..|
T Consensus 147 ~e~~~~hs~~iI~lL~~A~~~f~~~~----------------------------------~~R~~~~l~~~~A~ey~~~g 192 (247)
T PF11817_consen 147 EEKGVDHSKLIIELLEKAYEQFKKYG----------------------------------QNRMASYLSLEMAEEYFRLG 192 (247)
T ss_pred cccccchHHHHHHHHHHHHHHHHHhc----------------------------------cchHHHHHHHHHHHHHHHCC
Q ss_pred cHHHHHHHHHHHhccCcHH--------HHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002100 801 KLDLAADCYMNALNIKHTR--------AHQGLARVYHLKNQRKAAYDEMTKLI 845 (967)
Q Consensus 801 ~~~~A~~~~~~Al~~~~~~--------a~~~la~~~~~~g~~~~A~~~~~~al 845 (967)
++++|+++|+.+...-... .+..+..++...|+.+..+...-+++
T Consensus 193 ~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 193 DYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
No 470
>PTZ00234 variable surface protein Vir12; Provisional
Probab=57.04 E-value=61 Score=36.98 Aligned_cols=129 Identities=11% Similarity=0.053 Sum_probs=0.0
Q ss_pred hhHHHHH-hhhhccCCCCCCcccccCCCCCCCCCCCCCCCCC-----------------CCCCCCCCCCCCCCCCCCCCC
Q 002100 7 QNFFTTM-RSLKIIDGCKGTQVFAINPSGPPAGGGGSAGGGG-----------------GGGGGGGGGGGSSVGEKLLNH 68 (967)
Q Consensus 7 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~ 68 (967)
+++++.+ ++.....+-+++.......+..+++.+...+|.+ |.|++-.+.++++..+.....
T Consensus 214 ~~LL~kL~kC~~~~~~~~~~~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (433)
T PTZ00234 214 NPLITELAKCKTQGSNGSQSSFLGWFWGSSSPKTAPSKGSPGAQEPAKTAVVKSPGGIPSAGGKRAGAEGAGANKGLASV 293 (433)
T ss_pred HHHHHHHhcccccccCCCCcccccccccccCCCccccccCcccccccccccccCCCCCCCCCCCcCCCCccccccccccc
Q ss_pred CccccccccccccCCCCCCCCC-CCcccccccCCCCCCcccccCCcccccCCCcccHHHHHHHHhhhhc
Q 002100 69 LQDHLRVNSIRSKSNRSYQMPV-QAPVVIESVLPYGLPITDLLEPQIEPCLKFVDFVETLADLYRRIED 136 (967)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 136 (967)
-+......+..++++....... +.+.+..+..|.|.|......-+.-|...+ |-+.+|-.+|+.|.|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~d~~dS 361 (433)
T PTZ00234 294 APSQSREVLNGTQNPVPVAPLGSSQAGVHMPHGSKDIQQVSYTTLPTAPEVNP-DTSNFLEKTFGILKS 361 (433)
T ss_pred cccccccCcCCcccCcCCCCCCCCCCCccccCCCCCCCCcccccCCCCCcCCC-CCCchhhhhhhhhhh
No 471
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=56.79 E-value=7.9 Score=43.96 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002100 39 GGGSAGGGGGGGGGGGGGGGSSVGEK 64 (967)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (967)
+|+|||+||+||||++|.++++++++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (419)
T PRK10930 53 GGLGGGKGTGSGGGSSSQGPRPQLGG 78 (419)
T ss_pred CCCCCCCCCCCCCCCCCCcccccccc
No 472
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.76 E-value=88 Score=36.54 Aligned_cols=109 Identities=17% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhc
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADS 758 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~ 758 (967)
..+.+.+..+..+|-.++|+. +.-+|+ ..-.+..+.|+++.|.+...++-....
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~-----~s~D~d------~rFelal~lgrl~iA~~la~e~~s~~K--------------- 668 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALE-----LSTDPD------QRFELALKLGRLDIAFDLAVEANSEVK--------------- 668 (794)
T ss_pred hhhhhHHhHhhhccchHhhhh-----cCCChh------hhhhhhhhcCcHHHHHHHHHhhcchHH---------------
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc----------cCcHHHHHHHHH--
Q 002100 759 SLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN----------IKHTRAHQGLAR-- 826 (967)
Q Consensus 759 ~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----------~~~~~a~~~la~-- 826 (967)
|..||.+....+++..|.+||.+|.. .+....+..+|.
T Consensus 669 ------------------------------w~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~ 718 (794)
T KOG0276|consen 669 ------------------------------WRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLA 718 (794)
T ss_pred ------------------------------HHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHH
Q ss_pred -----------HHHHhCCHHHHHHHHHH
Q 002100 827 -----------VYHLKNQRKAAYDEMTK 843 (967)
Q Consensus 827 -----------~~~~~g~~~~A~~~~~~ 843 (967)
+|+..|+++++.+.+..
T Consensus 719 ~~~g~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 719 KKQGKNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HhhcccchHHHHHHHcCCHHHHHHHHHh
No 473
>PHA03249 DNA packaging tegument protein UL25; Provisional
Probab=56.11 E-value=27 Score=40.41 Aligned_cols=90 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccccCCCC
Q 002100 24 GTQVFAINPSGPPAGGGGSAGGGGGGGGGGGGGGGSSVGEKLLNHLQDHLRVNSIRSKSNRSYQMPVQAPVVIESVLPYG 103 (967)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (967)
+-..++.++...++..-...-..|.|.|.--|||.|+||.+...-.+...++.+-|..+...+-.|.+|++ |..
T Consensus 48 gl~~~s~~sd~~ssfe~v~et~~~~~~~~~~~~~~~~g~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 121 (653)
T PHA03249 48 GLSSYSSSSDNKSSFEVVSETDSGSEAEAERGRRAGMGGRNKATKPSRRNKTTQCRPTSLALATAATMPAT------PSS 121 (653)
T ss_pred ccccccccCCCccceeeeeccCCccccccccccccCCCCCCCCCCCcccCCccccCccchhhccCCCCCCC------ccc
Q ss_pred CCcccccCCcccccCC
Q 002100 104 LPITDLLEPQIEPCLK 119 (967)
Q Consensus 104 ~~~~~~~~p~~~~~~~ 119 (967)
-++.++-.|+.-|.+.
T Consensus 122 ~~~~~v~~~p~~~~~~ 137 (653)
T PHA03249 122 GKSPKVSSPPSIPSLS 137 (653)
T ss_pred CCCCCCCCCCCCCCCC
No 474
>PRK06341 single-stranded DNA-binding protein; Provisional
Probab=55.90 E-value=16 Score=35.59 Aligned_cols=44 Identities=32% Similarity=0.504 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 002100 34 GPPAGGGGSAGGGGGGGGGGGGGGGSSVGEKLLNHLQDHLRVNS 77 (967)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (967)
.+...+|||++||+-.|||+-|.+|+.++++..+...+....++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (166)
T PRK06341 115 DGRGEGGGGGGGGDDGGGGDFGSSGPSRGGPRPASSGGGGNFSR 158 (166)
T ss_pred ccCCcCCCCCCCCCccCCCccccCCCCCCCCCCCccCCCCCccc
No 475
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=55.38 E-value=16 Score=41.32 Aligned_cols=42 Identities=33% Similarity=0.534 Sum_probs=0.0
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002100 24 GTQVFAINPSGPPAGGGGSAGGGGGGGGGGGGGGGSSVGEKL 65 (967)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (967)
+.+.....++...+..|..=+..+||||||+|+|+|.|.+.+
T Consensus 69 gg~~~~Vg~Gnge~~~GD~I~rp~~g~g~g~G~g~gag~geG 110 (421)
T PF04285_consen 69 GGQREHVGPGNGEFKEGDVIGRPPGGGGGGDGGGQGAGDGEG 110 (421)
T ss_pred CCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCC
No 476
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=55.28 E-value=44 Score=38.34 Aligned_cols=95 Identities=23% Similarity=0.220 Sum_probs=0.0
Q ss_pred CCCCCCcccccCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC----------------------------------
Q 002100 20 DGCKGTQVFAINPSGPPAGGGGSAGGGGG--GGGGGGGGGGSSVGE---------------------------------- 63 (967)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------------------------------- 63 (967)
.+-.+..+.....++.+...|+|-+|-|+ |+|-||.||++|.|.
T Consensus 190 ~G~gvpGVGvpG~GGagaa~g~gv~g~gv~~G~GV~g~GG~pGvGvnqs~ssgqGE~~~~aesd~DGKv~ePgi~vaGa~ 269 (727)
T PF05642_consen 190 PGVGVPGVGVPGVGGAGAAPGVGVPGAGVAPGVGVGGVGGVPGVGVNQSNSSGQGEEQNNAESDSDGKVDEPGIRVAGAA 269 (727)
T ss_pred CCCCCCCcCCCCCcccccccccCccccccCCCCCccCCCCCCCcccccccccccccccccccccccccccCccccccccc
Q ss_pred -CCCCCCccccccccccccCCCCCCCCCCC--------cccccccCCCCCCcccccCCcc
Q 002100 64 -KLLNHLQDHLRVNSIRSKSNRSYQMPVQA--------PVVIESVLPYGLPITDLLEPQI 114 (967)
Q Consensus 64 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~p~~ 114 (967)
........+..++++.+.+....-.|+.+ +.+.+.+-....|.+...+|.+
T Consensus 270 ~S~AaSaastTS~sgSSTtTrTaSSgpS~~gg~GSssrnavTR~TDSiTrPIpSpG~~~~ 329 (727)
T PF05642_consen 270 GSAAASAASTTSPSGSSTTTRTASSGPSNPGGSGSSSRNAVTRQTDSITRPIPSPGEPQA 329 (727)
T ss_pred CCccccCCCccCCCCCCCccccCCcCccccccccccccccccccCccccCcCCCCCCccc
No 477
>PRK05325 hypothetical protein; Provisional
Probab=54.95 E-value=14 Score=41.38 Aligned_cols=37 Identities=41% Similarity=0.549 Sum_probs=0.0
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002100 23 KGTQVFAINPSGPPAGGGGSAGGGGGGGGGGGGGGGS 59 (967)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (967)
....++.++.....|.-=+.++|||+|+|.|+|+|.|
T Consensus 58 ~~~~Vg~Gn~~~~~GD~i~rp~g~g~G~G~~~~~geG 94 (401)
T PRK05325 58 KREGVGPGNGEFVVGDRIGRPQGGGGGGGQGGGDGEG 94 (401)
T ss_pred CCCccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCC
No 478
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=54.84 E-value=48 Score=33.50 Aligned_cols=100 Identities=20% Similarity=0.183 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccccCCCCCCcccccCCcccccCC
Q 002100 40 GGSAGGGGGGGGGGGGGGGSSVGEKLLNHLQDHLRVNSIRSKSNRSYQMPVQAPVVIESVLPYGLPITDLLEPQIEPCLK 119 (967)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 119 (967)
+|..|+|| ||||-.||-+|.......+..+ -+.+++.+. +....+.-++...
T Consensus 1 ~~~~g~g~-~g~~~~gg~~g~p~~~~a~~~~--------------------~~~p~~~~~-------~~~~a~~~~~~~~ 52 (221)
T KOG0037|consen 1 MGRYGYGG-GGGGMPGGQGGAPYQAAAPGGP--------------------GAPPPQASY-------GSKEASASPSVRQ 52 (221)
T ss_pred CCCCCCCC-CCCccCCCcCCCcccccCCCCC--------------------CCCCChhhh-------cCcCCCcCccccc
Q ss_pred CcccHHHHHHHHhhhhcCCCcccchhHHHHHHHHhhcCchhhhhhhhh-hhhhccccchhHHhHh
Q 002100 120 FVDFVETLADLYRRIEDCPQFEKSGVYLEQCAIFRGLSDPKLFRRSLR-CARQHAVDVHTKIVLA 183 (967)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 183 (967)
|.++++....-++ -.-+++...+. +.|+..|. ..|.+=....++...+
T Consensus 53 ~~~~~~~~~~f~~-----vD~d~sg~i~~-----------~eLq~aLsn~~~~~Fs~~TcrlmI~ 101 (221)
T KOG0037|consen 53 PPTFPQLAGWFQS-----VDRDRSGRILA-----------KELQQALSNGTWSPFSIETCRLMIS 101 (221)
T ss_pred CcccHHHHHHHHh-----hCccccccccH-----------HHHHHHhhcCCCCCCCHHHHHHHHH
No 479
>KOG3570 consensus MAPK-activating protein DENN [Signal transduction mechanisms]
Probab=54.48 E-value=13 Score=44.35 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccC
Q 002100 37 AGGGGSAGGGGGGGGGGGGGGGSSVGEKLLNHLQDHLRVNSIRSKS 82 (967)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (967)
+...|.||.|.-|+-||-|||.|||||.......++..+.|.-+.+
T Consensus 106 s~~~g~~gag~Rg~~g~h~~~a~~~gg~~~s~s~s~~qP~sads~~ 151 (1588)
T KOG3570|consen 106 SKEKGEGGAGSRGKEGTHATCASEEGGTESSESGSSLQPLSADSTP 151 (1588)
T ss_pred chhccccccccCCCCCCccccccCCCCcCcCcCCcCcCCCccCCCC
No 480
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.43 E-value=4.4e+02 Score=31.38 Aligned_cols=384 Identities=8% Similarity=-0.033 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHhHcCCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHH
Q 002100 303 GISVEAMRAAEEFSRTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACL 382 (967)
Q Consensus 303 ~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~ 382 (967)
++....++..+-|+-++.+ |.-+.+++|...|-++=.+-++ ..| ..-+.....-..++.....
T Consensus 34 ~~~~~~v~~~l~y~~~~~~--------------ase~~~~dLi~~~~~~~~e~l~-~in--~~~e~f~~~~~~~~~l~~~ 96 (872)
T KOG4814|consen 34 RTNTNLLRNFKCYISSFKS--------------ASEYRFDDLITNTQQHSEKYLQ-IIN--ENVESFSNEEKTEFKKLTF 96 (872)
T ss_pred cCCcHHHHHHHHHhhhhhh--------------HHHHHHHHHHHHHHHHHHHHHH-HHH--HhHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhcCCchhHhh---hhccchHHHHHHhhcchHHHHHHHHHHhccCcccccchHHHHHHHHHHHhhhchHHHHH
Q 002100 383 QVLLRELPCSMQNPNVMR---IFCSAEARERLAMVGHASFVLYYFLSQIGMEEDMKSNTTVMLLERLVESATESWQKQLA 459 (967)
Q Consensus 383 ~~i~~~~~~~l~~~~~~~---ll~s~~~~~r~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~ll~~l~~~~~~~~~~a~a 459 (967)
.+-..++...+....+-. .+...+.+ ..+.+.-+..+.....+..+. .+.......+..+..
T Consensus 97 ~~~~~~~~~~Ls~~~l~~a~~~~~~~~~~-----~~S~~~q~d~~~s~c~~~~~d----------~~m~~~~~~~~~~l~ 161 (872)
T KOG4814|consen 97 EFYLVNFQLYLSENDLDTANIYTAKVNIT-----DNSKYMDADLLIELCRMIYNS----------TVMLKEINNPETQLV 161 (872)
T ss_pred HHHHhcchhhhhHHHhhhhhhhhhcCCch-----hhhhhhhhHHHHHHHHhhcch----------HhHHhhhhChHHHHH
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhCc-------hhHHHHHHHHHHhcCChHHHHHHHHHHHh---------------
Q 002100 460 FHQLGVVMLEREEYKDAQNWFKAAVEAGH-------IYSLVGVARTKFKRGHKYSAYKLMNSLIS--------------- 517 (967)
Q Consensus 460 ~~~lG~~~~~~g~y~~A~~~f~~al~~~~-------~~a~~~la~~~~~~g~~~~A~~~l~~~i~--------------- 517 (967)
.++.|.-..+..+|.+--.+..+.-.... ..-...+-+++-....-.....+++.+..
T Consensus 162 ~~n~g~~t~k~~ky~e~~~~~~~s~~~~~~~k~s~~~em~n~v~~~~~~~~~~~~~d~y~~~a~n~v~~~~~~~~l~~~l 241 (872)
T KOG4814|consen 162 DVNIISFLKDVEKYLELPVENLKSHTDYSNLKYSVLIFMANCLVEGHPQASELEQCDHYLSLLQNEYPNKVDPFILAINL 241 (872)
T ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcccCCcchHHHHhcchhhhhcchhhcCccH
Q ss_pred -----ccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC----ChhH
Q 002100 518 -----DYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV----SPDC 588 (967)
Q Consensus 518 -----~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~ 588 (967)
.....+..-.....+ -.++..+...+.............+..-.---.+.-+.+.+.+...... ....
T Consensus 242 ~~~~~i~~~~et~~e~l~~~---Vm~V~~~~~~~~~~~~i~~l~~~~~~~s~~~~~~~~i~~~~~~~~~~~~g~~~~sr~ 318 (872)
T KOG4814|consen 242 TKRRNIVNPAETIEEILMRM---IMSVDVISNFQAVIASINDLSKMNTKFSIVCLDYLLINKLNSKNDSKFLGKAICSRF 318 (872)
T ss_pred HHHHHhhcccccccHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhcccchhhhhhhhHH
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHH
Q 002100 589 LELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVH 668 (967)
Q Consensus 589 ~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~ 668 (967)
+...-.-+....+..+-...+..-.++-.+.......+- .+-+.-....++|..+ ++.|.
T Consensus 319 l~~~~~~L~~dE~I~e~F~~~~t~~~lTkE~~~~iH~iL--Wn~A~~~F~~~~Y~~s------------------~~~y~ 378 (872)
T KOG4814|consen 319 LITTQSKLMNDEEIAESFENFSTQMELTKEAISCIHTLL--WNTAKKLFKMEKYVVS------------------IRFYK 378 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHH------------------HHHHH
Q ss_pred HHHhcCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 669 HMLANDPGK------SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISI 741 (967)
Q Consensus 669 ~~l~~~p~~------~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 741 (967)
..+..-|.+ ......+..+|+.+.+.+.|.+.++.|-+.+|.++-....+-.+....|.-++|+.........
T Consensus 379 ~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 379 LSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
No 481
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=54.28 E-value=27 Score=39.37 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHH-------hccCC--ChhHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002100 554 YPYKYRAILLVEENKLAAAITEINRI-------IGFKV--SPDCLELRAWISIALEDYDGALRDVRALL 613 (967)
Q Consensus 554 ~~~~~la~~~~~~g~~~~A~~~~~~a-------l~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al 613 (967)
.+...+..++.-.|+|..|++.++.+ ....| ....++..|.+|+.+++|.+|++.|..+|
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>PRK06341 single-stranded DNA-binding protein; Provisional
Probab=53.99 E-value=18 Score=35.28 Aligned_cols=45 Identities=33% Similarity=0.479 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 002100 37 AGGGGSAGGGGGGGGGGGGGGGSSVGEKLLNHLQDHLRVNSIRSK 81 (967)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (967)
.+...|||||+||+-.|||+-|.+++.+..+.........+....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (166)
T PRK06341 115 DGRGEGGGGGGGGDDGGGGDFGSSGPSRGGPRPASSGGGGNFSRD 159 (166)
T ss_pred ccCCcCCCCCCCCCccCCCccccCCCCCCCCCCCccCCCCCcccc
No 483
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=53.70 E-value=26 Score=39.44 Aligned_cols=88 Identities=11% Similarity=0.030 Sum_probs=0.0
Q ss_pred CCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhh---hcCCchhHhhhhccchHHHHHHhhcchHHHHHHHHHHhccCc
Q 002100 356 VSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELP---CSMQNPNVMRIFCSAEARERLAMVGHASFVLYYFLSQIGMEE 432 (967)
Q Consensus 356 ~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~---~~l~~~~~~~ll~s~~~~~r~~~~~~e~~~l~~~l~~l~~~~ 432 (967)
+. .+|++.++..|+.|..+-|.+.|.+|+.+++. ..+.-.+..+++..+++-++..-+ -....-.++..+=-.+.
T Consensus 185 ~~-~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~-id~~~~~al~~EGf~di 262 (521)
T KOG2075|consen 185 LA-ADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEV-IDKSFEDALTPEGFCDI 262 (521)
T ss_pred hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHH-hhhHHHhhhCccceeeh
Q ss_pred ccccchHHHHHHH
Q 002100 433 DMKSNTTVMLLER 445 (967)
Q Consensus 433 ~~~~~~~~~ll~~ 445 (967)
+...++..+++++
T Consensus 263 d~~~dt~~evl~r 275 (521)
T KOG2075|consen 263 DSTRDTYEEVLRR 275 (521)
T ss_pred hhHHHHHHHHHhh
No 484
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=53.34 E-value=10 Score=40.76 Aligned_cols=89 Identities=18% Similarity=0.123 Sum_probs=0.0
Q ss_pred CCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhhcCCchhHhhhhccchHHHHHHhhcchHHHHHHHHHHhccCcccc
Q 002100 356 VSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCSAEARERLAMVGHASFVLYYFLSQIGMEEDMK 435 (967)
Q Consensus 356 ~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~l~~~~~~~ll~s~~~~~r~~~~~~e~~~l~~~l~~l~~~~~~~ 435 (967)
++ ++||+.|+.-+.......|.+.|+.|+..|+...+..+--+.-+...-+. ||+..-....+-.+++.-...+....
T Consensus 72 l~-~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~-RLa~~~t~~el~~~~l~l~D~kdk~~ 149 (317)
T PF11822_consen 72 LT-PSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLT-RLADMFTHEELEAAFLRLKDKKDKIK 149 (317)
T ss_pred CC-cCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHH-HHHHhcCcccHhHhhhhhcCchhccc
Q ss_pred c--chHHHHHHH-H
Q 002100 436 S--NTTVMLLER-L 446 (967)
Q Consensus 436 ~--~~~~~ll~~-l 446 (967)
+ ...-.+++. +
T Consensus 150 sn~kl~~k~Ie~~L 163 (317)
T PF11822_consen 150 SNRKLFCKKIEHML 163 (317)
T ss_pred cHHHHHHHHHHHHh
No 485
>KOG3590 consensus Protein kinase A anchoring protein [Signal transduction mechanisms]
Probab=52.80 E-value=10 Score=41.28 Aligned_cols=45 Identities=4% Similarity=-0.118 Sum_probs=0.0
Q ss_pred cCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002100 19 IDGCKGTQVFAINPSGPPAGGGGSAGGGGGGGGGGGGGGGSSVGE 63 (967)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (967)
...|..-+..+..-.+-+..++|++|||||||||.-.||=|-+..
T Consensus 55 ~g~~~av~~~~a~~ds~~~~~~~~~~~~~s~~~aa~S~dIgl~S~ 99 (602)
T KOG3590|consen 55 AGSHVAINAISANMDSFSSSRTATLKKQPSHMEAAHSGDIGLRSC 99 (602)
T ss_pred ccchHHHhhccccccccccCCccccCCCCCCCccccCCCcCcccc
No 486
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=52.71 E-value=84 Score=26.17 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCC
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCS 534 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~ 534 (967)
+.+..+...+.-+-..|+|++|+.+|
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y------------------------------------------------------ 29 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNY------------------------------------------------------ 29 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHH------------------------------------------------------
Q ss_pred hHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHH
Q 002100 535 GKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAA 571 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~ 571 (967)
.+|++.+.+++...|+...-...+..+..-+.+.+.
T Consensus 30 -~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~ 65 (75)
T cd02682 30 -KKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEV 65 (75)
T ss_pred -HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
No 487
>PF10917 DUF2708: Protein of unknown function (DUF2708); InterPro: IPR024415 This entry represents fungus-induced proteins which may have role in hypoxia response[].
Probab=52.59 E-value=11 Score=26.70 Aligned_cols=22 Identities=45% Similarity=0.864 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 002100 36 PAGGGGSAGGGGGGGGGGGGGG 57 (967)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~ 57 (967)
++.+++|.-.+|++|.||||++
T Consensus 15 ssvs~~G~rC~g~~gyG~Gg~~ 36 (43)
T PF10917_consen 15 SSVSGGGHRCRGSNGYGGGGGG 36 (43)
T ss_pred hcccccccccCCCCCcCCCCce
No 488
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=52.59 E-value=36 Score=40.87 Aligned_cols=80 Identities=20% Similarity=0.245 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccccCCCCCCcccccCC
Q 002100 33 SGPPAGGGGSAGGGGGGGGGGGGGGGSSVGEKLLNHLQDHLRVNSIRSKSNRSYQMPVQAPVVIESVLPYGLPITDLLEP 112 (967)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 112 (967)
....+.++||||.|+|++.+|.||.++++|+...+.....+.....+.........|+....+....-+...+......|
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (572)
T PRK04537 429 EQRRGGGRSGPGGGSRSGSVGGGGRRDGAGADGKPRPRRKPRVEGEADAAAAGAETPVVAAAAAQAPGVVAADGERAPRK 508 (572)
T ss_pred ccCCCCCCCCCCCCcCCcccCCCCCCCcccCCCCCCCCCCCCcccccCCCCCCCCCCccccccccccCCCCCCCCCCCCC
No 489
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.18 E-value=5.4e+02 Score=31.74 Aligned_cols=339 Identities=13% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCchHHhhhhhhhhhHhhhHHH
Q 002100 561 ILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTL-DPSYMMFYGQLHGDNLVETLQPL 638 (967)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~~~~~~~~~~~~l~~~ 638 (967)
.++.+..-|+-|+..-+.--.-.. -.+++...|..++..|++++|...|-+.+.. +|....-. ++-+..-.+
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~k------fLdaq~Ikn 415 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKK------FLDAQRIKN 415 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHH------hcCHHHHHH
Q ss_pred hhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHH-------------------
Q 002100 639 VQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMR------------------- 699 (967)
Q Consensus 639 ~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~------------------- 699 (967)
+ ..+++...+..-.+..-...+-.+|.++++.+.-.+
T Consensus 416 L------------------------t~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~ 471 (933)
T KOG2114|consen 416 L------------------------TSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALE 471 (933)
T ss_pred H------------------------HHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHH
Q ss_pred ------HHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHH----------------HHHhcccchHHHHHHHH----
Q 002100 700 ------SLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAE----------------ESISIQRSFEAFFLKAY---- 753 (967)
Q Consensus 700 ------~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~----------------~al~~~p~~~~~~~~~~---- 753 (967)
++..|.-+......--..+-.++...++|++|+++++ ..+...|+.-...+...
T Consensus 472 Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~h~P~~t~~ili~~~t~~ 551 (933)
T KOG2114|consen 472 ILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSLPISELLRTLNKYGKILLEHDPEETMKILIELITEL 551 (933)
T ss_pred HHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhhc
Q ss_pred -------HhhhcC-------CCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc---------ccHHHHHHHHH
Q 002100 754 -------ALADSS-------LNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC---------EKLDLAADCYM 810 (967)
Q Consensus 754 -------~la~~~-------~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~---------g~~~~A~~~~~ 810 (967)
.+.+.. .-..........++...+..++.+....+.+.+-..+.-. -+.+.-+.+|.
T Consensus 552 ~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e~~~i~~t~~~~~l~~~sf~~~~~~~n~~~~l~h~~ 631 (933)
T KOG2114|consen 552 NSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEEVLEIIYTLLELSLMQKSFVTKPFEFNLEAELAHYQ 631 (933)
T ss_pred CCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchhhhccccchhhhhhhhccccccchhhccHHHHHHHH
Q ss_pred HHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCCh------HHHHHHHHHhhccCCCCc
Q 002100 811 NALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDR------DMAKSDLSMATQLDPMRT 882 (967)
Q Consensus 811 ~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~------~~A~~~l~~al~l~p~~~ 882 (967)
++.- .+|..-...+-..|...-..+-+.. .-.+...+...+. ..|.-.+.+.....+...
T Consensus 632 ~~~~~~sdpq~kt~~~~~l~~~~~~~~~~~~------------~~~l~ksn~l~d~~~~nvd~d~al~l~qm~df~dg~l 699 (933)
T KOG2114|consen 632 QYEGFDSDPQVKTTTLYDLYLELDAEDVPER------------TIILRKSNKLLDYAASNVDEDAALLLSQMSDFTDGLL 699 (933)
T ss_pred hhcccccChhhhhccchhhHHHHHhhhcccc------------cchhhhhcchhhhhhccccchHHHHHHHHhCCCchHH
Q ss_pred hHHHH------HHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 883 YPYRY------RAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALC 943 (967)
Q Consensus 883 ~~~~~------la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 943 (967)
+.+.. +-..++...+++.++...+..-+- ++..|...=......+..+.-.++..++|+
T Consensus 700 y~~~k~k~~~dl~~~~~q~~d~E~~it~~~~~g~~--~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 700 YSYEKLKEGQDLMLYFQQISDPETVITLCERLGKE--DPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHhhccchHHHHHHHHHhhChHHHHHHHHHhCcc--ChHHHHHHHHHHhhhcchhhHHHHHHHHHH
No 490
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=51.93 E-value=33 Score=31.47 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 002100 919 HLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKA 958 (967)
Q Consensus 919 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~ 958 (967)
..+|..+...|++++|...|-+|+...|+..+++.+|.+.
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q~t 106 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQKT 106 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHhh
No 491
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=51.57 E-value=46 Score=35.22 Aligned_cols=58 Identities=14% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 680 LRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEE 737 (967)
Q Consensus 680 ~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~ 737 (967)
.....+..|...|.+.+|+...++++..+|-+...+..+-.++...|+--.|.+.|++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
No 492
>PF05611 DUF780: Caenorhabditis elegans protein of unknown function (DUF780); InterPro: IPR008498 This family consists of several short proteins of unknown function found in Caenorhabditis species.
Probab=51.48 E-value=23 Score=27.70 Aligned_cols=47 Identities=21% Similarity=0.274 Sum_probs=0.0
Q ss_pred cCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002100 19 IDGCKGTQVFAINPSGPPAGGGGSAGGGGGGGGGGGGGGGSSVGEKL 65 (967)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (967)
..+|.+..+.+..+++.=...-=..||.||+.++..+|+||+++.+.
T Consensus 10 agGy~sGymGsnasssGYarEdYA~ggsgg~~~~~~~gsggnt~~g~ 56 (71)
T PF05611_consen 10 AGGYSSGYMGSNASSSGYAREDYASGGSGGSSNNQSGGSGGNTNPGG 56 (71)
T ss_pred cCcccccccccccccccchhhhhcccCCCCcCCCCccCCCCCCCCcc
No 493
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=51.19 E-value=19 Score=32.11 Aligned_cols=31 Identities=23% Similarity=0.160 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHhChHHHHHHHHHHHhhh
Q 002100 358 DIEDAVMLIEYGLEEAAYLLVAACLQVLLRE 388 (967)
Q Consensus 358 ~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~ 388 (967)
+.+++..++.+|..++++.|++.|..++.++
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
No 494
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.10 E-value=1.2e+02 Score=34.20 Aligned_cols=132 Identities=20% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHH
Q 002100 590 ELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHH 669 (967)
Q Consensus 590 ~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~ 669 (967)
...+.-.++.++|..|.+.+..+...-|.... + ..+..+... |..|...|..+|...++.
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-~------~~~~~l~~~-------------y~~WD~fd~~~A~~~l~~ 194 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREE-Y------QRYKDLCEG-------------YDAWDRFDHKEALEYLEK 194 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-H------HHHHHHHHH-------------HHHHHccCHHHHHHHHHH
Q ss_pred HHhcC---CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 670 MLAND---PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNY-STSEHEKLVYEGWILYDTGHREEALAKAEESISI 741 (967)
Q Consensus 670 ~l~~~---p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~-~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 741 (967)
.+... +.....+..+..+.........+........+. .+.....++..|.=-...|+|+.|+..+-+++++
T Consensus 195 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 195 LLKRDKALNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
No 495
>PRK12798 chemotaxis protein; Reviewed
Probab=50.66 E-value=4.2e+02 Score=30.00 Aligned_cols=250 Identities=16% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 002100 439 TVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISD 518 (967)
Q Consensus 439 ~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~ 518 (967)
..++=+++....++.|++.. ...-+.+|.-.|---+.++.+-.--..+.......-+...|..|+..++.+.+..+
T Consensus 63 L~~i~~~l~aa~~~vw~dpr-Nv~Aa~iy~lSGGnP~vlr~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i--- 138 (421)
T PRK12798 63 LGTIDERLRAADPEVWDDPR-NVDAALIYLLSGGNPATLRKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGV--- 138 (421)
T ss_pred HHHHHHHHHhCCHHHhCCcc-chhHHHhhHhcCCCHHHHHHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcC---
Q ss_pred cCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC----ChhHHHHHHH
Q 002100 519 YTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV----SPDCLELRAW 594 (967)
Q Consensus 519 ~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~ 594 (967)
....+.+.............+...+..+|+..|+.+--..| ..-++..--.
T Consensus 139 -------------------------~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~ 193 (421)
T PRK12798 139 -------------------------APEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLF 193 (421)
T ss_pred -------------------------ChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhH
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcC
Q 002100 595 ISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAND 674 (967)
Q Consensus 595 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~ 674 (967)
+..+.|+.+++..+-.+.+......+.+. ......-..+-+.........+....+..|.
T Consensus 194 la~~~g~~~rf~~la~~Y~rRF~~S~YA~------~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~-------------- 253 (421)
T PRK12798 194 IAAQLGDADKFEALARNYLRRFRHSPYAS------QFAQRFVDLVVRLDDEIRDARLVEILSFMDP-------------- 253 (421)
T ss_pred HHHhcCcHHHHHHHHHHHHHHhccCchHH------HHHHHHHHHHHhccccccHHHHHHHHHhcCc--------------
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCchhHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 675 PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNY----STSEHEKLVYEGWILYDTGHREEALAKAEE 737 (967)
Q Consensus 675 p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~----~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~ 737 (967)
+....+|..++..-...|+.+-|.-.-++++.+ +.....+..+.+....-..++++|+..+..
T Consensus 254 ~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~ 320 (421)
T PRK12798 254 ERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQ 320 (421)
T ss_pred hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhc
No 496
>PF12854 PPR_1: PPR repeat
Probab=50.38 E-value=37 Score=23.14 Aligned_cols=30 Identities=10% Similarity=-0.063 Sum_probs=0.0
Q ss_pred cCCChHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 911 FKPDLQLLHLRAAFHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 911 ~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~ 940 (967)
..|+.-.|..+-..|.+.|+.++|.+.+++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
No 497
>PF12854 PPR_1: PPR repeat
Probab=50.05 E-value=36 Score=23.18 Aligned_cols=31 Identities=10% Similarity=-0.157 Sum_probs=0.0
Q ss_pred ccCCChhHHHHHHHHHHHhcCHHHHHHHHHH
Q 002100 581 GFKVSPDCLELRAWISIALEDYDGALRDVRA 611 (967)
Q Consensus 581 ~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~ 611 (967)
...|+...|..+-..|.+.|+.++|.+.+++
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
No 498
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=49.82 E-value=13 Score=40.06 Aligned_cols=30 Identities=37% Similarity=0.675 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002100 31 NPSGPPAGGGGSAGGGGGGGGGGGGGGGSS 60 (967)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (967)
|......-+.+||||+||||++..+||++|
T Consensus 9 s~nvedrrg~~~~~~~ggg~~~~~~gg~~g 38 (292)
T PF04228_consen 9 SSNVEDRRGSSGGGGRGGGGRGIAIGGGGG 38 (292)
T ss_pred CCCCccCcccCCCCCCCCCcccccccccch
No 499
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.21 E-value=3.5e+02 Score=30.55 Aligned_cols=133 Identities=17% Similarity=0.101 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhH----HHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHE----KLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAY 753 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~----a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 753 (967)
.......+..++..++|..|.+.+......-|.... .....|.-+++.-++++|...+++.+...-...
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~------- 203 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALN------- 203 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhH-------
Q ss_pred HhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH---HHHHHHHHHHH
Q 002100 754 ALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR---AHQGLARVYHL 830 (967)
Q Consensus 754 ~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~---a~~~la~~~~~ 830 (967)
.....+..+..+......+..+........+.-... .++.-|.--..
T Consensus 204 ------------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~ 253 (379)
T PF09670_consen 204 ------------------------------QEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAA 253 (379)
T ss_pred ------------------------------hHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHh
Q ss_pred hCCHHHHHHHHHHHHHH
Q 002100 831 KNQRKAAYDEMTKLIEK 847 (967)
Q Consensus 831 ~g~~~~A~~~~~~al~~ 847 (967)
.|+|+.|...+=++++.
T Consensus 254 ~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 254 QGRYDDAVARLYRALEL 270 (379)
T ss_pred cCCHHHHHHHHHHHHHH
No 500
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=48.71 E-value=2.8e+02 Score=27.47 Aligned_cols=156 Identities=17% Similarity=0.244 Sum_probs=0.0
Q ss_pred hhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH-----hcCHHHHHHHHHH
Q 002100 629 DNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLR-----LNSQKAAMRSLRL 703 (967)
Q Consensus 629 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~-----~g~~~~A~~~l~~ 703 (967)
..+-..+-...++|+.| ..+|..--+.+.. +...+..|..++. .+++..|++.++.
T Consensus 38 ~lLgdYlEgi~knF~~A------------------~kv~K~nCden~y-~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~ 98 (248)
T KOG4014|consen 38 QLLGDYLEGIQKNFQAA------------------VKVFKKNCDENSY-PKSCYKYGMYMLAGKGGDDASLSKAIRPMKI 98 (248)
T ss_pred HHHHHHHHHHHHHHHHH------------------HHHHHhcccccCC-cHHHHHhhhhhhcccCCCccCHHHHHHHHHH
Q ss_pred HHhcCCchhHHHHHHHHHHHHcC-------ChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHh
Q 002100 704 ARNYSTSEHEKLVYEGWILYDTG-------HREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEAL 776 (967)
Q Consensus 704 al~~~p~~~~a~~~lg~~~~~~g-------~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~ 776 (967)
+-. .+.+.+-.++|.++..-. +.++|+.++.++-.+..
T Consensus 99 aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~--------------------------------- 143 (248)
T KOG4014|consen 99 ACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLED--------------------------------- 143 (248)
T ss_pred Hhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCC---------------------------------
Q ss_pred cCCCCCCchHHHHHHhHHHHHhc------------------------ccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC
Q 002100 777 RCPSDGLRKGQALNNLGSVYVDC------------------------EKLDLAADCYMNALNIKHTRAHQGLARVYHLKN 832 (967)
Q Consensus 777 ~~~~~~~~~~~a~~~lg~~~~~~------------------------g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g 832 (967)
+.+-++|...|+.. ++.++|.++-.+|-+++++.+-.++.+.|..-.
T Consensus 144 ---------~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~~~~aCAN~SrMyklGD 214 (248)
T KOG4014|consen 144 ---------GEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELDIPQACANVSRMYKLGD 214 (248)
T ss_pred ---------chHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcCChHHHhhHHHHHHccC
Q ss_pred ----CHHHHHHHHHHHHHH
Q 002100 833 ----QRKAAYDEMTKLIEK 847 (967)
Q Consensus 833 ----~~~~A~~~~~~al~~ 847 (967)
+.++|..+-+++.++
T Consensus 215 Gv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 215 GVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred CCCccHHHHHHHHHHHHHH
Done!