Query 002100
Match_columns 967
No_of_seqs 986 out of 5358
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 12:21:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 5.3E-37 1.8E-41 349.0 45.8 373 523-962 6-386 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 5E-37 1.7E-41 349.2 45.1 375 462-930 4-388 (388)
3 2xpi_A Anaphase-promoting comp 100.0 1.5E-35 5.1E-40 357.1 41.9 436 456-959 83-594 (597)
4 2xpi_A Anaphase-promoting comp 100.0 4.9E-33 1.7E-37 335.1 41.2 421 435-926 99-595 (597)
5 2gw1_A Mitochondrial precursor 100.0 7.2E-33 2.5E-37 326.5 38.5 411 455-960 4-494 (514)
6 3fp2_A TPR repeat-containing p 100.0 3.2E-32 1.1E-36 323.2 39.8 411 453-956 21-503 (537)
7 2y4t_A DNAJ homolog subfamily 100.0 2.7E-30 9.3E-35 299.3 37.8 349 536-948 9-414 (450)
8 3ieg_A DNAJ homolog subfamily 100.0 2.8E-29 9.6E-34 280.3 41.3 321 555-965 5-356 (359)
9 2y4t_A DNAJ homolog subfamily 100.0 7E-29 2.4E-33 287.4 41.7 384 445-936 14-446 (450)
10 2gw1_A Mitochondrial precursor 100.0 1.7E-29 5.8E-34 297.6 35.6 396 517-963 7-463 (514)
11 4g1t_A Interferon-induced prot 100.0 1.7E-29 5.9E-34 294.8 34.4 336 549-955 90-470 (472)
12 4g1t_A Interferon-induced prot 100.0 8E-30 2.7E-34 297.6 31.5 369 454-922 48-471 (472)
13 3fp2_A TPR repeat-containing p 100.0 1.4E-29 4.8E-34 300.4 33.1 370 522-963 31-476 (537)
14 3ieg_A DNAJ homolog subfamily 100.0 9.9E-28 3.4E-32 267.7 34.8 328 523-929 10-354 (359)
15 3hve_A Gigaxonin; ubiquitin, c 100.0 1.3E-29 4.4E-34 269.5 14.0 201 238-447 14-224 (256)
16 3hym_B Cell division cycle pro 100.0 2.6E-26 8.9E-31 253.3 33.4 290 542-925 11-314 (330)
17 3i3n_A Kelch-like protein 11; 100.0 4.1E-29 1.4E-33 269.1 7.3 201 238-445 15-230 (279)
18 2xm6_A Protein corresponding t 100.0 7E-25 2.4E-29 257.4 44.0 386 455-951 37-474 (490)
19 3hym_B Cell division cycle pro 99.9 6.5E-26 2.2E-30 250.1 32.3 299 577-960 12-315 (330)
20 2xm6_A Protein corresponding t 99.9 4.5E-24 1.5E-28 250.5 46.6 379 474-958 24-449 (490)
21 3htm_A Speckle-type POZ protei 99.9 2.4E-27 8.3E-32 236.1 13.0 154 239-396 18-171 (172)
22 1fch_A Peroxisomal targeting s 99.9 3.9E-26 1.3E-30 256.7 22.7 304 596-944 35-359 (368)
23 1fch_A Peroxisomal targeting s 99.9 2.2E-25 7.6E-30 250.4 28.6 300 525-911 34-359 (368)
24 2ooe_A Cleavage stimulation fa 99.9 7.2E-23 2.5E-27 242.7 39.6 412 450-949 6-497 (530)
25 4eqf_A PEX5-related protein; a 99.9 2.6E-24 8.8E-29 241.9 25.0 290 538-909 46-354 (365)
26 2h6f_A Protein farnesyltransfe 99.9 1.7E-24 5.8E-29 243.4 23.1 251 544-859 88-360 (382)
27 3hqi_A Speckle-type POZ protei 99.9 1.5E-25 5.1E-30 245.7 14.0 154 239-396 158-311 (312)
28 4eqf_A PEX5-related protein; a 99.9 3E-24 1E-28 241.4 24.6 283 574-944 48-356 (365)
29 2h6f_A Protein farnesyltransfe 99.9 5.1E-24 1.8E-28 239.4 22.5 251 670-961 89-365 (382)
30 3cv0_A Peroxisome targeting si 99.9 3.8E-23 1.3E-27 227.6 26.2 267 523-850 28-318 (327)
31 4eoz_A Speckle-type POZ protei 99.9 1.1E-25 3.7E-30 217.3 4.8 137 239-379 9-145 (145)
32 2ooe_A Cleavage stimulation fa 99.9 3.6E-21 1.2E-25 228.1 44.0 362 534-962 27-476 (530)
33 3cv0_A Peroxisome targeting si 99.9 7.3E-23 2.5E-27 225.3 25.3 279 455-815 19-315 (327)
34 3u4t_A TPR repeat-containing p 99.9 3.6E-23 1.2E-27 221.8 21.7 248 678-962 3-268 (272)
35 3e4b_A ALGK; tetratricopeptide 99.9 2.1E-22 7.1E-27 233.2 29.1 381 461-945 7-422 (452)
36 2pl2_A Hypothetical conserved 99.9 2.3E-22 7.8E-27 208.5 23.8 199 550-813 2-212 (217)
37 3u4t_A TPR repeat-containing p 99.9 2.9E-22 9.9E-27 214.7 24.2 248 552-860 2-263 (272)
38 3uq3_A Heat shock protein STI1 99.9 2.4E-22 8.3E-27 212.9 23.2 242 677-958 4-256 (258)
39 3e4b_A ALGK; tetratricopeptide 99.9 2.8E-21 9.5E-26 223.7 33.8 356 523-962 10-403 (452)
40 3mkr_A Coatomer subunit epsilo 99.9 2.4E-21 8.2E-26 210.3 27.1 260 636-959 9-279 (291)
41 2if5_A Zinc finger and BTB dom 99.9 3.5E-23 1.2E-27 192.2 8.4 112 238-352 8-119 (120)
42 2vkp_A BTB/POZ domain-containi 99.9 1E-22 3.5E-27 185.7 11.1 104 249-356 2-109 (109)
43 3uq3_A Heat shock protein STI1 99.9 3.9E-21 1.3E-25 203.6 25.1 235 552-858 4-253 (258)
44 2pl2_A Hypothetical conserved 99.9 2E-21 6.7E-26 201.5 21.8 197 675-942 2-212 (217)
45 3sf4_A G-protein-signaling mod 99.9 1E-21 3.5E-26 223.2 18.5 300 552-933 8-365 (406)
46 1r29_A B-cell lymphoma 6 prote 99.9 1.4E-22 4.7E-27 190.2 8.7 114 238-355 12-126 (127)
47 2ppi_A Gigaxonin; BTB domain, 99.9 1.6E-22 5.3E-27 193.5 7.8 113 238-353 30-144 (144)
48 3sf4_A G-protein-signaling mod 99.9 4.3E-21 1.5E-25 218.1 21.2 306 455-836 7-365 (406)
49 3mkr_A Coatomer subunit epsilo 99.9 1.7E-20 5.9E-25 203.5 24.4 271 561-905 7-288 (291)
50 4a1s_A PINS, partner of inscut 99.9 6.6E-21 2.3E-25 217.6 21.2 289 551-949 46-377 (411)
51 4a1s_A PINS, partner of inscut 99.9 5.5E-21 1.9E-25 218.2 20.3 283 521-916 53-377 (411)
52 3b84_A Zinc finger and BTB dom 99.9 1.6E-22 5.6E-27 187.0 5.3 110 239-355 8-117 (119)
53 2z8h_A Transcription regulator 99.9 1.5E-22 5.1E-27 192.7 4.8 119 238-361 19-137 (138)
54 1xi4_A Clathrin heavy chain; a 99.9 1.6E-17 5.4E-22 203.0 48.8 373 462-940 990-1380(1630)
55 1buo_A POZ domain, protein (pr 99.9 6.3E-22 2.1E-26 183.7 8.1 110 239-356 12-121 (121)
56 1xi4_A Clathrin heavy chain; a 99.9 1.5E-17 5.2E-22 203.2 48.5 415 435-956 1000-1440(1630)
57 1ouv_A Conserved hypothetical 99.9 2.1E-19 7.1E-24 193.0 28.9 229 674-951 2-258 (273)
58 3ro2_A PINS homolog, G-protein 99.8 3.7E-20 1.3E-24 203.7 23.1 274 587-948 6-336 (338)
59 2vpk_A Myoneurin; transcriptio 99.8 6.6E-22 2.3E-26 182.3 6.7 110 239-353 6-115 (116)
60 2yy9_A Zinc finger and BTB dom 99.8 3.5E-22 1.2E-26 189.1 4.4 113 238-357 8-120 (135)
61 3ro2_A PINS homolog, G-protein 99.8 6.5E-20 2.2E-24 201.7 22.3 273 523-850 12-335 (338)
62 1ouv_A Conserved hypothetical 99.8 4.2E-19 1.4E-23 190.7 27.6 233 549-855 2-259 (273)
63 3vtx_A MAMA; tetratricopeptide 99.8 2.3E-19 7.8E-24 180.2 21.5 172 551-746 3-175 (184)
64 1xnf_A Lipoprotein NLPI; TPR, 99.8 8.7E-20 3E-24 195.4 19.2 232 664-938 25-269 (275)
65 2q81_A MIZ-1 protein; BTB/POZ 99.8 1.7E-21 5.7E-26 180.2 4.5 108 238-353 10-117 (119)
66 3vtx_A MAMA; tetratricopeptide 99.8 2.7E-19 9.2E-24 179.7 20.8 177 585-825 4-180 (184)
67 1xnf_A Lipoprotein NLPI; TPR, 99.8 2.4E-19 8.2E-24 192.0 21.1 243 536-841 22-269 (275)
68 4abn_A Tetratricopeptide repea 99.8 1.7E-19 5.8E-24 210.0 21.3 212 536-812 85-318 (474)
69 2ho1_A Type 4 fimbrial biogene 99.8 1.1E-18 3.8E-23 184.4 25.6 214 672-955 30-249 (252)
70 2ihc_A Transcription regulator 99.8 3.4E-22 1.2E-26 186.3 -1.4 112 238-353 12-123 (124)
71 3ohu_A Transcription regulator 99.8 4.9E-22 1.7E-26 185.8 -0.4 111 238-352 15-125 (125)
72 2q7f_A YRRB protein; TPR, prot 99.8 2.9E-19 9.8E-24 187.5 20.2 167 553-743 23-190 (243)
73 3ga1_A Nucleus accumbens-assoc 99.8 1.2E-21 4.1E-26 184.1 1.1 113 238-356 16-128 (129)
74 2vq2_A PILW, putative fimbrial 99.8 3E-18 1E-22 177.0 26.8 213 673-955 3-222 (225)
75 2q7f_A YRRB protein; TPR, prot 99.8 7.1E-19 2.4E-23 184.5 20.1 200 520-746 27-227 (243)
76 2ho1_A Type 4 fimbrial biogene 99.8 5E-18 1.7E-22 179.4 26.2 209 586-858 37-249 (252)
77 2ond_A Cleavage stimulation fa 99.8 2.9E-18 9.8E-23 187.9 24.9 248 536-889 33-304 (308)
78 3ulq_A Response regulator aspa 99.8 1.4E-17 4.8E-22 188.3 31.0 243 555-850 105-371 (383)
79 4i17_A Hypothetical protein; T 99.8 4.5E-18 1.5E-22 177.2 24.1 212 675-962 4-227 (228)
80 3ulq_A Response regulator aspa 99.8 1.7E-18 6E-23 195.8 22.1 309 560-947 19-371 (383)
81 2vq2_A PILW, putative fimbrial 99.8 1.7E-17 5.7E-22 171.4 27.7 211 549-857 4-221 (225)
82 3m5b_A Zinc finger and BTB dom 99.8 2.1E-20 7.1E-25 171.9 5.0 92 251-354 26-117 (119)
83 4abn_A Tetratricopeptide repea 99.8 1.1E-18 3.9E-23 203.0 19.9 214 566-844 81-318 (474)
84 3fkc_A Transcriptional regulat 99.8 1E-19 3.4E-24 167.1 8.0 101 239-346 15-115 (116)
85 2ond_A Cleavage stimulation fa 99.8 1.1E-17 3.7E-22 183.3 24.3 217 695-951 33-277 (308)
86 4i17_A Hypothetical protein; T 99.8 2.7E-17 9.3E-22 171.2 25.5 81 664-744 62-149 (228)
87 4gyw_A UDP-N-acetylglucosamine 99.8 2.6E-18 9.1E-23 207.8 18.5 174 548-745 4-178 (723)
88 3qky_A Outer membrane assembly 99.7 3.3E-17 1.1E-21 174.7 20.2 180 546-746 8-229 (261)
89 3nf1_A KLC 1, kinesin light ch 99.7 1.1E-17 3.8E-22 182.2 16.8 254 548-850 22-310 (311)
90 4gyw_A UDP-N-acetylglucosamine 99.7 1.5E-17 5.2E-22 201.2 19.5 171 582-816 4-175 (723)
91 3dra_A Protein farnesyltransfe 99.7 2.4E-16 8.2E-21 170.0 26.1 223 536-819 50-292 (306)
92 3q15_A PSP28, response regulat 99.7 2.6E-16 8.8E-21 177.7 27.4 232 680-945 103-366 (378)
93 3q15_A PSP28, response regulat 99.7 4.5E-16 1.5E-20 175.7 29.1 243 554-849 102-367 (378)
94 3nf1_A KLC 1, kinesin light ch 99.7 9.8E-18 3.3E-22 182.7 14.3 242 674-947 23-310 (311)
95 1qqe_A Vesicular transport pro 99.7 8.5E-17 2.9E-21 174.7 21.5 219 693-959 32-284 (292)
96 3qky_A Outer membrane assembly 99.7 6.2E-17 2.1E-21 172.5 19.8 203 707-959 10-239 (261)
97 2pzi_A Probable serine/threoni 99.7 5.8E-17 2E-21 197.1 20.4 172 547-746 388-568 (681)
98 3dra_A Protein farnesyltransfe 99.7 3.5E-16 1.2E-20 168.7 22.6 229 567-859 47-300 (306)
99 2pzi_A Probable serine/threoni 99.7 2.3E-16 7.9E-21 191.9 22.1 242 672-959 388-673 (681)
100 1hz4_A MALT regulatory protein 99.7 1.5E-15 5E-20 170.9 27.0 311 554-947 15-352 (373)
101 1hz4_A MALT regulatory protein 99.7 3E-15 1E-19 168.4 27.0 278 455-815 12-322 (373)
102 3urz_A Uncharacterized protein 99.7 4.2E-16 1.4E-20 160.0 17.3 174 786-960 4-201 (208)
103 1qqe_A Vesicular transport pro 99.7 4.3E-16 1.5E-20 169.1 18.1 218 535-819 33-273 (292)
104 1b89_A Protein (clathrin heavy 99.7 7.8E-17 2.7E-21 178.9 11.5 326 535-957 19-368 (449)
105 1b89_A Protein (clathrin heavy 99.7 1.3E-16 4.4E-21 177.1 13.0 334 525-960 70-428 (449)
106 3urz_A Uncharacterized protein 99.7 7.1E-16 2.4E-20 158.3 17.3 185 585-851 3-190 (208)
107 4e6h_A MRNA 3'-END-processing 99.7 6.1E-13 2.1E-17 159.0 44.4 442 445-958 54-584 (679)
108 3edt_B KLC 2, kinesin light ch 99.7 9.3E-16 3.2E-20 164.1 17.8 229 663-944 20-281 (283)
109 2yhc_A BAMD, UPF0169 lipoprote 99.7 1.7E-15 5.9E-20 157.4 19.2 209 678-950 4-219 (225)
110 3as5_A MAMA; tetratricopeptide 99.7 2.2E-15 7.6E-20 149.9 19.2 170 553-746 8-178 (186)
111 4ga2_A E3 SUMO-protein ligase 99.7 3E-16 1E-20 151.9 10.7 143 560-726 4-148 (150)
112 3as5_A MAMA; tetratricopeptide 99.6 1.5E-15 5.2E-20 151.1 16.1 169 784-952 6-181 (186)
113 4ga2_A E3 SUMO-protein ligase 99.6 5.7E-16 1.9E-20 149.9 11.3 147 521-693 2-149 (150)
114 2yhc_A BAMD, UPF0169 lipoprote 99.6 1.4E-14 4.8E-19 150.5 20.7 173 552-745 3-217 (225)
115 3dss_A Geranylgeranyl transfer 99.6 5.4E-14 1.8E-18 152.4 24.6 187 536-746 47-272 (331)
116 2r5s_A Uncharacterized protein 99.6 5.4E-15 1.9E-19 147.2 14.8 167 549-740 2-172 (176)
117 3edt_B KLC 2, kinesin light ch 99.6 8.5E-15 2.9E-19 156.5 17.2 226 567-847 15-281 (283)
118 3dss_A Geranylgeranyl transfer 99.6 5.7E-13 2E-17 144.3 30.5 237 468-748 40-311 (331)
119 3qou_A Protein YBBN; thioredox 99.6 2.7E-14 9.4E-19 154.3 18.8 168 549-740 113-283 (287)
120 3q7a_A Farnesyltransferase alp 99.6 1.9E-13 6.6E-18 148.6 25.0 244 536-819 71-336 (349)
121 3q7a_A Farnesyltransferase alp 99.6 8.4E-14 2.9E-18 151.4 21.0 241 554-858 55-343 (349)
122 2r5s_A Uncharacterized protein 99.5 1.8E-14 6.2E-19 143.4 12.2 156 787-943 7-172 (176)
123 4e6h_A MRNA 3'-END-processing 99.5 5.4E-11 1.9E-15 142.2 43.8 424 472-963 47-555 (679)
124 4gco_A Protein STI-1; structur 99.5 2.4E-14 8.3E-19 133.8 11.6 120 544-687 4-124 (126)
125 3qou_A Protein YBBN; thioredox 99.5 1E-13 3.4E-18 149.9 17.0 169 584-814 114-283 (287)
126 3rjv_A Putative SEL1 repeat pr 99.5 3.4E-13 1.2E-17 138.6 19.6 169 787-960 19-211 (212)
127 4gco_A Protein STI-1; structur 99.5 8.6E-14 2.9E-18 130.0 13.5 121 578-722 4-125 (126)
128 2ifu_A Gamma-SNAP; membrane fu 99.5 1.3E-13 4.5E-18 150.6 17.2 147 787-936 77-253 (307)
129 2ifu_A Gamma-SNAP; membrane fu 99.5 2.7E-13 9.3E-18 148.0 18.6 205 536-817 8-225 (307)
130 3gyz_A Chaperone protein IPGC; 99.5 4.8E-14 1.7E-18 135.9 9.9 115 666-820 24-138 (151)
131 2vsy_A XCC0866; transferase, g 99.5 3.2E-13 1.1E-17 161.1 18.9 162 534-719 4-169 (568)
132 1p5q_A FKBP52, FK506-binding p 99.5 6E-15 2.1E-19 163.3 1.8 180 536-741 82-294 (336)
133 3rjv_A Putative SEL1 repeat pr 99.5 1.2E-12 4E-17 134.6 18.5 187 536-827 3-209 (212)
134 2vsy_A XCC0866; transferase, g 99.5 4.5E-13 1.5E-17 159.8 17.6 157 566-746 2-162 (568)
135 4f3v_A ESX-1 secretion system 99.5 1E-12 3.5E-17 138.3 17.0 211 591-860 12-249 (282)
136 2c2l_A CHIP, carboxy terminus 99.5 2.6E-13 8.8E-18 146.1 12.6 153 787-945 39-200 (281)
137 3gyz_A Chaperone protein IPGC; 99.4 1.1E-13 3.7E-18 133.5 8.5 114 574-745 23-137 (151)
138 1dce_A Protein (RAB geranylger 99.4 8.8E-14 3E-18 164.2 9.1 185 536-744 46-270 (567)
139 2c2l_A CHIP, carboxy terminus 99.4 2.8E-13 9.6E-18 145.8 12.0 96 522-620 10-106 (281)
140 1p5q_A FKBP52, FK506-binding p 99.4 5.5E-14 1.9E-18 155.6 6.0 145 664-848 133-295 (336)
141 4f3v_A ESX-1 secretion system 99.4 2E-13 6.8E-18 143.6 9.8 186 534-744 21-240 (282)
142 2vgx_A Chaperone SYCD; alterna 99.4 2.7E-13 9.4E-18 130.6 9.5 127 807-963 8-137 (148)
143 2ast_A S-phase kinase-associat 99.4 7.7E-13 2.6E-17 127.8 10.9 106 258-367 3-139 (159)
144 2hr2_A Hypothetical protein; a 99.4 1.7E-13 5.8E-18 130.6 5.9 129 819-965 12-152 (159)
145 3mv2_B Coatomer subunit epsilo 99.4 9.7E-12 3.3E-16 132.5 19.7 244 466-746 22-287 (310)
146 2xcb_A PCRH, regulatory protei 99.4 1E-12 3.4E-17 125.5 9.2 127 807-963 5-134 (142)
147 1hh8_A P67PHOX, NCF-2, neutrop 99.4 9.1E-12 3.1E-16 127.4 16.9 128 787-915 7-154 (213)
148 2fo7_A Synthetic consensus TPR 99.4 2E-11 7E-16 113.7 17.0 131 788-948 3-136 (136)
149 2vgx_A Chaperone SYCD; alterna 99.4 2.2E-12 7.7E-17 124.1 10.6 83 541-623 9-92 (148)
150 1dce_A Protein (RAB geranylger 99.3 9.5E-13 3.2E-17 155.3 9.5 189 565-817 40-269 (567)
151 2fo7_A Synthetic consensus TPR 99.3 2.3E-11 7.9E-16 113.3 17.1 133 588-744 3-135 (136)
152 2xcb_A PCRH, regulatory protei 99.3 2.4E-12 8.4E-17 122.8 10.4 118 540-681 5-123 (142)
153 1hh8_A P67PHOX, NCF-2, neutrop 99.3 3.3E-11 1.1E-15 123.2 19.1 132 555-712 8-155 (213)
154 3upv_A Heat shock protein STI1 99.3 8.7E-12 3E-16 116.0 12.1 113 820-962 6-125 (126)
155 2qfc_A PLCR protein; TPR, HTH, 99.3 4.8E-11 1.6E-15 129.1 19.7 103 678-814 155-265 (293)
156 2e2e_A Formate-dependent nitri 99.3 9.7E-12 3.3E-16 123.3 12.3 135 796-960 20-160 (177)
157 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 2.5E-13 8.6E-18 156.9 -0.4 147 565-735 246-408 (457)
158 2qfc_A PLCR protein; TPR, HTH, 99.3 5.2E-11 1.8E-15 128.9 17.5 176 550-743 72-268 (293)
159 4gcn_A Protein STI-1; structur 99.3 3.7E-11 1.3E-15 112.1 13.6 110 786-918 8-119 (127)
160 4gcn_A Protein STI-1; structur 99.3 2.9E-11 1E-15 112.9 12.1 107 678-817 8-114 (127)
161 3rkv_A Putative peptidylprolyl 99.3 3.9E-11 1.3E-15 117.2 13.6 125 820-964 13-147 (162)
162 3mv2_B Coatomer subunit epsilo 99.3 1.8E-10 6.2E-15 122.7 19.5 186 664-858 86-293 (310)
163 3u3w_A Transcriptional activat 99.3 1.2E-10 4E-15 126.1 18.4 172 557-814 79-265 (293)
164 2e2e_A Formate-dependent nitri 99.2 2E-11 7E-16 121.0 11.0 87 536-622 27-117 (177)
165 1a17_A Serine/threonine protei 99.2 1.1E-10 3.9E-15 113.6 15.9 132 587-742 14-147 (166)
166 3upv_A Heat shock protein STI1 99.2 9E-11 3.1E-15 109.0 14.4 112 588-723 6-123 (126)
167 2fbn_A 70 kDa peptidylprolyl i 99.2 8.3E-12 2.9E-16 126.5 7.7 156 560-739 11-184 (198)
168 3u3w_A Transcriptional activat 99.2 9.1E-11 3.1E-15 126.9 16.3 159 534-743 90-268 (293)
169 3gw4_A Uncharacterized protein 99.2 1.3E-10 4.5E-15 117.4 16.4 169 688-914 2-179 (203)
170 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 1E-11 3.4E-16 143.5 8.1 142 535-700 250-407 (457)
171 1a17_A Serine/threonine protei 99.2 1.8E-10 6E-15 112.2 15.7 131 553-707 13-146 (166)
172 3sz7_A HSC70 cochaperone (SGT) 99.2 7.1E-11 2.4E-15 115.5 12.2 114 550-687 8-122 (164)
173 2fbn_A 70 kDa peptidylprolyl i 99.2 2.1E-11 7.3E-16 123.4 8.4 139 536-698 21-176 (198)
174 4ajy_C Transcription elongatio 99.2 3.4E-11 1.2E-15 105.5 8.4 81 258-341 4-97 (97)
175 2lni_A Stress-induced-phosphop 99.2 1.8E-10 6.2E-15 107.3 13.7 118 586-727 16-133 (133)
176 2lni_A Stress-induced-phosphop 99.2 1.5E-10 5E-15 108.0 12.6 121 549-693 12-133 (133)
177 2vyi_A SGTA protein; chaperone 99.2 1.9E-10 6.6E-15 106.5 13.3 119 586-728 12-130 (131)
178 2vyi_A SGTA protein; chaperone 99.2 1.1E-10 3.6E-15 108.3 11.1 123 548-694 7-130 (131)
179 3sz7_A HSC70 cochaperone (SGT) 99.2 2.1E-10 7.2E-15 112.2 13.7 115 585-723 10-124 (164)
180 2hr2_A Hypothetical protein; a 99.2 1E-10 3.4E-15 111.5 10.8 102 678-819 11-135 (159)
181 4b4t_Q 26S proteasome regulato 99.2 3.8E-10 1.3E-14 129.1 17.9 211 553-814 4-244 (434)
182 4b4t_Q 26S proteasome regulato 99.2 3.4E-10 1.2E-14 129.5 17.4 210 678-945 4-246 (434)
183 3q49_B STIP1 homology and U bo 99.2 1.6E-10 5.3E-15 108.9 11.8 101 862-962 23-129 (137)
184 1hxi_A PEX5, peroxisome target 99.2 1.8E-10 6.2E-15 106.4 11.8 99 680-818 19-117 (121)
185 3gw4_A Uncharacterized protein 99.1 6.9E-10 2.4E-14 112.1 17.1 144 674-850 21-179 (203)
186 3rkv_A Putative peptidylprolyl 99.1 1.2E-10 4.2E-15 113.6 9.9 114 523-645 18-151 (162)
187 2if4_A ATFKBP42; FKBP-like, al 99.1 6.9E-11 2.3E-15 130.7 9.1 157 454-621 176-334 (338)
188 1hxi_A PEX5, peroxisome target 99.1 1.7E-10 5.7E-15 106.7 9.8 96 523-621 24-120 (121)
189 2xev_A YBGF; tetratricopeptide 99.1 1E-09 3.5E-14 102.0 15.3 117 820-963 4-124 (129)
190 3q49_B STIP1 homology and U bo 99.1 3.8E-10 1.3E-14 106.2 12.2 92 548-645 4-96 (137)
191 1elw_A TPR1-domain of HOP; HOP 99.1 1.4E-09 4.9E-14 98.5 15.6 112 819-960 5-117 (118)
192 2uy1_A Cleavage stimulation fa 99.1 3E-08 1E-12 115.1 29.8 211 695-943 196-412 (493)
193 1na0_A Designed protein CTPR3; 99.1 1.2E-09 4.1E-14 100.1 14.6 120 549-692 4-125 (125)
194 1wao_1 Serine/threonine protei 99.1 4.9E-11 1.7E-15 138.2 5.8 140 454-623 3-158 (477)
195 1na0_A Designed protein CTPR3; 99.1 1.5E-09 5.3E-14 99.3 14.8 117 586-726 9-125 (125)
196 2dba_A Smooth muscle cell asso 99.1 9.6E-10 3.3E-14 104.6 13.7 113 819-961 29-145 (148)
197 2kck_A TPR repeat; tetratricop 99.1 6.9E-10 2.4E-14 99.7 11.6 104 674-817 2-108 (112)
198 3ro3_A PINS homolog, G-protein 99.1 1.3E-09 4.4E-14 105.0 14.0 139 678-850 9-161 (164)
199 3k9i_A BH0479 protein; putativ 99.1 1.8E-10 6.1E-15 105.6 7.4 98 862-959 4-105 (117)
200 1zu2_A Mitochondrial import re 99.1 2.6E-10 8.8E-15 108.4 8.6 98 862-959 16-135 (158)
201 1wao_1 Serine/threonine protei 99.1 1.6E-10 5.5E-15 133.9 8.5 119 518-645 8-129 (477)
202 1elw_A TPR1-domain of HOP; HOP 99.1 2.9E-09 1E-13 96.4 15.1 110 588-721 6-115 (118)
203 1zu2_A Mitochondrial import re 99.1 5.2E-10 1.8E-14 106.3 10.2 88 536-623 19-128 (158)
204 2if4_A ATFKBP42; FKBP-like, al 99.0 1.5E-10 5.2E-15 127.9 7.2 135 676-850 177-331 (338)
205 2dba_A Smooth muscle cell asso 99.0 1.5E-09 5.1E-14 103.3 12.6 118 547-688 22-143 (148)
206 2kck_A TPR repeat; tetratricop 99.0 1.1E-09 3.9E-14 98.2 10.9 107 548-678 1-111 (112)
207 1fs1_B SKP1, cyclin A/CDK2-ass 99.0 9.1E-10 3.1E-14 103.6 9.7 98 258-364 4-128 (141)
208 1elr_A TPR2A-domain of HOP; HO 99.0 1.5E-09 5.1E-14 100.5 11.2 122 677-831 3-125 (131)
209 3ro3_A PINS homolog, G-protein 99.0 8.7E-10 3E-14 106.2 9.8 141 784-948 7-162 (164)
210 1elr_A TPR2A-domain of HOP; HO 99.0 1.5E-09 5.2E-14 100.4 10.8 117 819-966 5-129 (131)
211 2xev_A YBGF; tetratricopeptide 99.0 5.1E-09 1.7E-13 97.2 14.0 66 554-619 3-72 (129)
212 3k9i_A BH0479 protein; putativ 99.0 5E-10 1.7E-14 102.6 6.9 90 534-623 5-98 (117)
213 2uy1_A Cleavage stimulation fa 99.0 4.8E-07 1.6E-11 104.9 33.4 208 664-910 199-412 (493)
214 1ihg_A Cyclophilin 40; ppiase 98.9 3.4E-09 1.2E-13 118.4 13.2 26 556-581 226-251 (370)
215 1ihg_A Cyclophilin 40; ppiase 98.9 4E-09 1.4E-13 117.8 13.2 123 587-733 224-362 (370)
216 2p1m_A SKP1-like protein 1A; F 98.9 5.8E-10 2E-14 107.4 2.7 107 257-369 5-140 (160)
217 2kat_A Uncharacterized protein 98.8 1.3E-08 4.5E-13 92.5 10.7 85 865-949 2-87 (115)
218 2kat_A Uncharacterized protein 98.8 1.4E-08 4.8E-13 92.3 9.4 87 536-622 2-89 (115)
219 2l6j_A TPR repeat-containing p 98.7 1E-08 3.5E-13 92.1 4.9 100 678-811 4-103 (111)
220 3n71_A Histone lysine methyltr 98.7 1.5E-07 5.2E-12 108.1 14.7 134 684-849 315-466 (490)
221 2l6j_A TPR repeat-containing p 98.6 7.6E-08 2.6E-12 86.3 9.2 88 552-645 3-97 (111)
222 1klx_A Cysteine rich protein B 98.6 3.1E-07 1.1E-11 86.6 13.5 111 692-848 9-127 (138)
223 3ma5_A Tetratricopeptide repea 98.6 5.4E-08 1.8E-12 86.1 7.4 74 877-950 2-76 (100)
224 1na3_A Designed protein CTPR2; 98.6 1.7E-07 5.7E-12 80.6 10.1 71 676-746 7-77 (91)
225 3ma5_A Tetratricopeptide repea 98.6 8E-08 2.7E-12 85.0 8.1 76 548-623 2-78 (100)
226 1na3_A Designed protein CTPR2; 98.6 2E-07 6.9E-12 80.1 9.4 82 551-638 7-89 (91)
227 3n71_A Histone lysine methyltr 98.6 3.2E-07 1.1E-11 105.5 13.7 137 717-910 314-463 (490)
228 1klx_A Cysteine rich protein B 98.6 6.2E-07 2.1E-11 84.5 13.5 116 663-826 14-137 (138)
229 1pc2_A Mitochondria fission pr 98.6 3.5E-07 1.2E-11 85.7 11.1 101 864-964 14-120 (152)
230 3ly7_A Transcriptional activat 98.5 3.1E-06 1E-10 91.7 18.5 77 670-747 269-345 (372)
231 3u64_A Protein TP_0956; tetrat 98.5 1.5E-06 5E-11 90.1 14.6 102 847-948 147-273 (301)
232 3ly7_A Transcriptional activat 98.5 2.6E-06 8.7E-11 92.3 16.8 76 874-949 269-344 (372)
233 1hv2_A Elongin C, ELC1; protei 98.5 3.8E-07 1.3E-11 79.6 8.3 81 257-341 5-99 (99)
234 2kc7_A BFR218_protein; tetratr 98.4 3.3E-07 1.1E-11 80.4 7.2 68 556-623 3-72 (99)
235 2fnj_C Transcription elongatio 98.4 3E-07 1E-11 79.8 5.6 81 258-341 3-96 (96)
236 3v7d_A Suppressor of kinetocho 98.3 2E-06 6.8E-11 83.1 11.0 98 257-357 8-134 (169)
237 3bee_A Putative YFRE protein; 98.3 2.6E-06 8.9E-11 73.8 10.5 83 878-960 2-88 (93)
238 2kc7_A BFR218_protein; tetratr 98.3 2.1E-06 7.2E-11 75.2 10.0 66 887-952 5-72 (99)
239 3u64_A Protein TP_0956; tetrat 98.3 3.4E-05 1.2E-09 79.9 18.8 107 672-818 146-272 (301)
240 3drz_A BTB/POZ domain-containi 98.3 3.8E-06 1.3E-10 74.6 9.7 94 257-354 7-106 (107)
241 2eqx_A Kelch repeat and BTB do 98.2 5.1E-07 1.7E-11 80.2 3.7 86 353-447 5-98 (105)
242 3qww_A SET and MYND domain-con 98.2 5E-06 1.7E-10 94.0 11.9 99 862-960 312-432 (433)
243 1pc2_A Mitochondria fission pr 98.2 8.3E-06 2.8E-10 76.4 11.3 88 536-623 15-108 (152)
244 3bee_A Putative YFRE protein; 98.1 5.4E-06 1.8E-10 71.8 8.1 73 549-621 2-78 (93)
245 1nzn_A CGI-135 protein, fissio 98.1 1.7E-05 5.9E-10 71.4 11.2 100 865-964 18-123 (126)
246 3qwp_A SET and MYND domain-con 98.0 2.6E-05 8.8E-10 88.3 13.3 111 688-830 297-425 (429)
247 2v5f_A Prolyl 4-hydroxylase su 98.0 2.2E-05 7.5E-10 69.7 10.0 79 882-960 5-91 (104)
248 3qww_A SET and MYND domain-con 98.0 1.9E-05 6.6E-10 89.1 11.8 94 723-848 309-412 (433)
249 1vcb_B Protein (elongin C); tu 98.0 8.5E-06 2.9E-10 72.6 6.6 82 257-341 18-112 (112)
250 3qwp_A SET and MYND domain-con 97.9 6.2E-05 2.1E-09 85.1 12.8 96 720-847 295-400 (429)
251 2v5f_A Prolyl 4-hydroxylase su 97.7 0.00015 5E-09 64.2 10.3 73 787-859 6-87 (104)
252 1nzn_A CGI-135 protein, fissio 97.6 0.00047 1.6E-08 62.1 11.5 88 536-623 18-111 (126)
253 1y8m_A FIS1; mitochondria, unk 97.6 0.00047 1.6E-08 63.0 11.5 86 879-964 36-126 (144)
254 3o48_A Mitochondria fission 1 97.6 0.00033 1.1E-08 63.2 9.9 84 881-964 39-127 (134)
255 3drx_A BTB/POZ domain-containi 97.4 0.00026 9E-09 69.0 7.2 95 257-355 13-113 (202)
256 4g26_A Pentatricopeptide repea 96.9 0.03 1E-06 64.5 20.0 161 788-949 28-211 (501)
257 4h7y_A Dual specificity protei 96.9 0.0089 3E-07 54.9 11.9 120 812-954 7-133 (161)
258 3ffl_A Anaphase-promoting comp 96.8 0.0056 1.9E-07 57.6 9.9 136 678-828 20-165 (167)
259 4g26_A Pentatricopeptide repea 96.5 0.064 2.2E-06 61.7 18.4 153 465-620 34-211 (501)
260 4h7y_A Dual specificity protei 96.4 0.024 8.2E-07 52.1 11.1 116 707-855 8-131 (161)
261 1y8m_A FIS1; mitochondria, unk 96.3 0.034 1.2E-06 50.8 11.6 74 550-623 36-114 (144)
262 3txn_A 26S proteasome regulato 96.2 0.8 2.7E-05 50.2 24.1 99 717-849 104-212 (394)
263 3ffl_A Anaphase-promoting comp 96.2 0.03 1E-06 52.7 10.6 130 459-596 22-165 (167)
264 3o48_A Mitochondria fission 1 96.0 0.04 1.4E-06 49.7 10.2 72 552-623 39-115 (134)
265 1qsa_A Protein (soluble lytic 95.8 4 0.00014 47.6 41.4 137 796-940 295-438 (618)
266 3txn_A 26S proteasome regulato 95.5 0.49 1.7E-05 51.9 18.4 165 457-645 19-200 (394)
267 1s1g_A Potassium voltage-gated 95.5 0.015 5.1E-07 52.5 5.2 92 257-355 14-112 (124)
268 3kvt_A Potassium channel prote 95.3 0.0042 1.4E-07 55.4 0.8 96 257-356 6-106 (115)
269 1t1d_A Protein (potassium chan 94.8 0.016 5.4E-07 50.1 3.1 84 258-345 3-90 (100)
270 1nn7_A Potassium channel KV4.2 94.6 0.013 4.5E-07 51.3 2.3 88 258-352 2-96 (105)
271 2nz0_B Potassium voltage-gated 94.6 0.023 7.8E-07 52.4 3.8 92 257-355 36-134 (140)
272 1qsa_A Protein (soluble lytic 94.2 11 0.00038 43.9 30.9 118 825-943 221-347 (618)
273 3mkq_A Coatomer beta'-subunit; 94.2 2.4 8.2E-05 51.5 22.3 45 797-844 663-707 (814)
274 4gns_B Protein CSD3, chitin bi 93.9 0.21 7.1E-06 59.5 11.0 60 679-738 338-397 (754)
275 4gns_B Protein CSD3, chitin bi 93.3 1.2 4.3E-05 52.9 16.4 58 555-612 339-397 (754)
276 2l6f_A Focal adhesion kinase 1 91.7 0.023 7.8E-07 54.2 0.0 7 58-64 192-198 (215)
277 3mkq_A Coatomer beta'-subunit; 92.3 4.9 0.00017 48.7 20.8 100 561-704 607-707 (814)
278 3lpz_A GET4 (YOR164C homolog); 92.3 13 0.00045 39.3 28.9 48 436-483 9-61 (336)
279 1zbp_A Hypothetical protein VP 91.8 2.3 8E-05 43.3 13.8 63 561-623 5-68 (273)
280 4b4t_P 26S proteasome regulato 91.7 19 0.00065 40.1 22.9 102 713-848 138-248 (445)
281 3kae_A CDC27, possible protein 91.7 8.6 0.0003 35.9 21.3 69 678-746 62-148 (242)
282 1zbp_A Hypothetical protein VP 90.5 1.1 3.8E-05 45.7 9.9 60 687-746 6-65 (273)
283 4b4t_P 26S proteasome regulato 90.0 22 0.00077 39.5 21.4 103 679-814 138-246 (445)
284 3kae_A CDC27, possible protein 89.9 13 0.00043 34.8 17.9 115 820-947 116-240 (242)
285 3mkq_B Coatomer subunit alpha; 89.4 13 0.00046 35.3 15.9 55 677-739 7-61 (177)
286 4ady_A RPN2, 26S proteasome re 88.1 55 0.0019 39.8 31.9 218 714-940 378-619 (963)
287 2ff4_A Probable regulatory pro 87.0 6.1 0.00021 43.3 13.9 59 681-739 174-232 (388)
288 2ff4_A Probable regulatory pro 86.1 7.7 0.00026 42.5 14.1 59 556-614 174-233 (388)
289 4fhn_B Nucleoporin NUP120; pro 85.8 7.5 0.00026 49.3 15.7 140 556-738 815-964 (1139)
290 4dpv_Z Protein (parvovirus coa 85.5 0.21 7.2E-06 54.0 0.9 7 183-189 124-130 (584)
291 4b4t_R RPN7, 26S proteasome re 85.1 2.6 9.1E-05 47.0 9.8 93 551-645 129-227 (429)
292 4b4t_S RPN3, 26S proteasome re 84.9 1.8 6.1E-05 48.8 8.1 141 687-851 145-303 (523)
293 1ya0_A SMG-7 transcript varian 83.6 4 0.00014 46.2 10.5 67 680-746 154-220 (497)
294 3mkq_B Coatomer subunit alpha; 81.4 15 0.00053 34.9 11.9 44 787-836 35-78 (177)
295 1ya0_A SMG-7 transcript varian 80.6 6.2 0.00021 44.6 10.5 66 862-927 166-232 (497)
296 4b4t_R RPN7, 26S proteasome re 80.3 2.8 9.7E-05 46.7 7.6 61 679-739 132-195 (429)
297 4fhn_B Nucleoporin NUP120; pro 75.8 16 0.00053 46.4 13.4 138 684-842 818-962 (1139)
298 2vkp_A BTB/POZ domain-containi 75.3 2.4 8.3E-05 36.8 4.1 33 356-389 77-109 (109)
299 3ax2_A Mitochondrial import re 75.0 6 0.0002 31.5 5.8 39 920-958 22-60 (73)
300 3n44_F E1 envelope glycoprotei 71.3 0.83 2.8E-05 47.5 0.0 6 150-155 100-105 (473)
301 2eqx_A Kelch repeat and BTB do 69.0 3.2 0.00011 35.9 3.3 35 323-357 7-41 (105)
302 4b4t_S RPN3, 26S proteasome re 68.6 11 0.00039 42.3 8.4 137 795-949 145-304 (523)
303 3spa_A Mtrpol, DNA-directed RN 67.0 35 0.0012 41.9 12.5 58 681-739 130-192 (1134)
304 2wpv_A GET4, UPF0363 protein Y 65.2 1.4E+02 0.0047 31.2 27.0 46 439-484 13-60 (312)
305 3spa_A Mtrpol, DNA-directed RN 64.7 58 0.002 39.9 13.8 101 787-916 128-235 (1134)
306 2r9r_B Paddle chimera voltage 63.2 4.7 0.00016 46.0 4.1 85 257-345 53-141 (514)
307 1om2_A Protein (mitochondrial 60.5 9.7 0.00033 31.9 4.4 37 921-957 26-62 (95)
308 2z8h_A Transcription regulator 59.0 3.7 0.00013 37.5 1.9 35 356-391 101-135 (138)
309 2yy9_A Zinc finger and BTB dom 59.0 4 0.00014 37.1 2.1 35 356-391 87-121 (135)
310 1r29_A B-cell lymphoma 6 prote 58.9 7.5 0.00026 34.7 4.0 30 359-388 97-126 (127)
311 2pne_A 6.5 kDa glycine-rich an 55.9 31 0.0011 25.6 5.8 12 21-32 12-23 (81)
312 2vpk_A Myoneurin; transcriptio 55.1 8.9 0.0003 33.6 3.7 28 359-386 88-115 (116)
313 2ast_A S-phase kinase-associat 53.8 23 0.00079 33.0 6.5 78 323-404 48-140 (159)
314 1fs1_B SKP1, cyclin A/CDK2-ass 53.2 44 0.0015 30.4 8.2 94 307-404 25-135 (141)
315 3lpz_A GET4 (YOR164C homolog); 52.9 2.3E+02 0.0077 29.8 24.2 39 570-609 119-159 (336)
316 1buo_A POZ domain, protein (pr 52.8 14 0.00046 32.6 4.5 30 359-388 91-120 (121)
317 2q81_A MIZ-1 protein; BTB/POZ 52.7 11 0.00037 33.2 3.9 28 359-386 90-117 (119)
318 3b84_A Zinc finger and BTB dom 52.5 6.6 0.00022 34.7 2.3 30 359-388 88-117 (119)
319 1wy6_A Hypothetical protein ST 51.0 71 0.0024 28.8 8.5 61 556-616 93-155 (172)
320 2if5_A Zinc finger and BTB dom 48.3 16 0.00055 32.0 4.3 27 359-385 93-119 (120)
321 2wpv_A GET4, UPF0363 protein Y 47.4 2.6E+02 0.009 29.0 22.8 18 795-812 197-214 (312)
322 3htm_A Speckle-type POZ protei 45.8 12 0.00042 35.2 3.3 35 323-357 131-165 (172)
323 3lvg_A Clathrin heavy chain 1; 45.5 0.014 4.7E-07 64.3 -19.3 263 585-935 53-324 (624)
324 3ubw_A 14-3-3E, 14-3-3 protein 42.7 2.8E+02 0.0095 27.9 17.2 59 554-612 32-93 (261)
325 3nwm_A Peptide/beta-2microglob 38.2 8.4 0.00029 42.8 0.8 6 265-270 400-405 (443)
326 1wy6_A Hypothetical protein ST 37.4 2.3E+02 0.008 25.6 12.6 57 686-742 99-155 (172)
327 3iqu_A 14-3-3 protein sigma; s 36.9 3.2E+02 0.011 27.0 16.4 60 554-613 9-71 (236)
328 2w2u_A Hypothetical P60 katani 36.6 46 0.0016 27.2 4.8 32 455-486 17-48 (83)
329 3m5b_A Zinc finger and BTB dom 36.2 23 0.00077 31.2 3.2 51 323-387 67-117 (119)
330 2ppi_A Gigaxonin; BTB domain, 36.2 15 0.00051 33.6 2.1 27 359-385 117-143 (144)
331 3uzd_A 14-3-3 protein gamma; s 35.9 3.4E+02 0.012 27.0 17.5 59 555-613 6-67 (248)
332 4eoz_A Speckle-type POZ protei 35.4 16 0.00055 33.2 2.2 32 359-390 93-124 (145)
333 3hqi_A Speckle-type POZ protei 34.6 21 0.00073 37.4 3.3 35 323-357 271-305 (312)
334 3ax2_A Mitochondrial import re 33.8 69 0.0024 25.4 5.2 30 887-916 22-51 (73)
335 2v6y_A AAA family ATPase, P60 32.9 56 0.0019 26.6 4.8 31 456-486 10-40 (83)
336 3u84_A Menin; MLL, JUND, ledgf 32.7 1.9E+02 0.0066 31.0 9.8 42 476-517 298-346 (550)
337 3p0s_A Capsid protein VP; icos 31.7 18 0.00063 36.5 1.9 7 141-147 105-111 (494)
338 2crb_A Nuclear receptor bindin 30.3 72 0.0025 26.3 4.8 30 457-486 15-44 (97)
339 3mv2_A Coatomer subunit alpha; 30.2 4.7E+02 0.016 27.2 12.3 26 682-707 118-143 (325)
340 2ijq_A Hypothetical protein; s 29.8 2.8E+02 0.0094 25.7 9.5 78 886-963 36-129 (161)
341 4gq2_M Nucleoporin NUP120; bet 29.3 4.2E+02 0.014 32.4 14.1 109 684-814 816-925 (950)
342 3ga1_A Nucleus accumbens-assoc 29.0 8.5 0.00029 34.5 -0.9 32 356-388 96-127 (129)
343 3dza_A Uncharacterized putativ 28.6 3E+02 0.01 26.1 9.6 60 555-614 110-178 (191)
344 2crb_A Nuclear receptor bindin 28.4 54 0.0018 27.1 3.7 27 883-909 16-42 (97)
345 3esl_A Checkpoint serine/threo 28.3 2.5E+02 0.0085 27.1 9.1 67 782-849 76-146 (202)
346 1o9d_A 14-3-3-like protein C; 27.8 4.8E+02 0.016 26.2 17.5 58 554-611 9-71 (260)
347 3re2_A Predicted protein; meni 27.5 1.3E+02 0.0044 31.7 7.3 78 822-910 239-324 (472)
348 2npm_A 14-3-3 domain containin 27.2 4.9E+02 0.017 26.1 17.5 58 554-611 29-92 (260)
349 3t5x_A PCI domain-containing p 26.7 1.4E+02 0.0046 29.0 7.3 35 455-489 12-46 (203)
350 4gq2_M Nucleoporin NUP120; bet 26.4 6.6E+02 0.022 30.6 15.1 113 557-709 814-928 (950)
351 2w2u_A Hypothetical P60 katani 26.4 1.4E+02 0.0049 24.1 6.2 20 923-942 27-46 (83)
352 3esl_A Checkpoint serine/threo 26.2 3E+02 0.01 26.5 9.4 32 883-914 116-147 (202)
353 2aan_A Auracyanin A; cupredoxi 26.2 15 0.0005 33.4 0.2 18 253-270 104-124 (139)
354 1wfd_A Hypothetical protein 15 25.5 87 0.003 26.1 4.8 31 456-486 14-44 (93)
355 3hve_A Gigaxonin; ubiquitin, c 25.1 46 0.0016 33.6 3.7 34 356-390 99-132 (256)
356 2rpa_A Katanin P60 ATPase-cont 25.0 59 0.002 26.1 3.4 27 460-486 15-41 (78)
357 2br9_A 14-3-3E, 14-3-3 protein 25.0 5.1E+02 0.017 25.6 18.1 57 555-611 7-66 (234)
358 4a1g_A Mitotic checkpoint seri 24.9 4E+02 0.014 24.3 12.0 77 768-850 47-133 (152)
359 2v6y_A AAA family ATPase, P60 24.2 1.8E+02 0.006 23.6 6.3 16 926-941 22-37 (83)
360 2qx5_A Nucleoporin NIC96; mRNA 24.1 4.7E+02 0.016 30.4 12.3 20 564-584 549-568 (661)
361 2p1m_A SKP1-like protein 1A; F 24.1 59 0.002 30.2 3.9 78 323-404 46-139 (160)
362 4a1g_A Mitotic checkpoint seri 24.0 4.2E+02 0.014 24.2 10.1 93 419-517 27-129 (152)
363 3re2_A Predicted protein; meni 23.6 2.4E+02 0.0081 29.8 8.4 29 551-579 294-322 (472)
364 3i3n_A Kelch-like protein 11; 23.6 53 0.0018 33.7 3.9 32 359-390 109-140 (279)
365 2v6x_A Vacuolar protein sortin 23.5 1E+02 0.0034 25.1 4.8 31 456-486 12-42 (85)
366 4a5x_A MITD1, MIT domain-conta 22.8 1E+02 0.0035 25.2 4.6 28 459-486 18-45 (86)
367 2ijq_A Hypothetical protein; s 22.4 4.6E+02 0.016 24.2 9.8 59 557-615 36-104 (161)
368 2qx5_A Nucleoporin NIC96; mRNA 22.3 9.5E+02 0.032 27.8 22.3 31 917-948 538-570 (661)
369 3u84_A Menin; MLL, JUND, ledgf 22.0 2.5E+02 0.0087 30.1 8.3 29 551-579 316-344 (550)
370 2cpt_A SKD1 protein, vacuolar 21.2 1E+02 0.0034 27.0 4.5 30 457-486 18-47 (117)
371 2cwy_A Hypothetical protein TT 21.2 2.1E+02 0.0072 23.7 6.3 73 887-961 6-91 (94)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5.3e-37 Score=349.02 Aligned_cols=373 Identities=16% Similarity=0.123 Sum_probs=351.3
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALED 601 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~ 601 (967)
+..+...+.| ++|+..++++++.+|++..++..+|.++...|++++|+..+++++..+| ++.++..+|.++...|+
T Consensus 6 a~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDF---EAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 4555666655 9999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH
Q 002100 602 YDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR 681 (967)
Q Consensus 602 ~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~ 681 (967)
+++|+..|++++.++|++..++ ..++.++...+++++| +..+.++++.+|+....+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~------~~l~~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~ 138 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGY------INLAAALVAAGDMEGA------------------VQAYVSALQYNPDLYCVR 138 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHHSCSSHH------------------HHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCcHHHH
Confidence 9999999999999999999888 7789999999999999 999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCC
Q 002100 682 FRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLN 761 (967)
Q Consensus 682 ~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~ 761 (967)
..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++.
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--------------- 203 (388)
T 1w3b_A 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL--------------- 203 (388)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---------------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999666
Q ss_pred CCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhCCHHHHHH
Q 002100 762 PESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLARVYHLKNQRKAAYD 839 (967)
Q Consensus 762 ~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~~~la~~~~~~g~~~~A~~ 839 (967)
.++.++|.++...|++++|+..|+++++.+ +..++..+|.++...|++++|+.
T Consensus 204 -------------------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 258 (388)
T 1w3b_A 204 -------------------------DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258 (388)
T ss_dssp -------------------------HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 789999999999999999999999999854 45689999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-
Q 002100 840 EMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD- 914 (967)
Q Consensus 840 ~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~- 914 (967)
.|+++++.+|+++.++..++.. |++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++..|+
T Consensus 259 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 338 (388)
T 1w3b_A 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338 (388)
T ss_dssp HHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999843 99999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 915 LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 915 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
..++..+|.++...|++++|+..|+++++++|++++++..+..+...+
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 468999999999999999999999999999999999988877766544
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5e-37 Score=349.22 Aligned_cols=375 Identities=17% Similarity=0.127 Sum_probs=348.5
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhCchh--HHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHH
Q 002100 462 QLGVVMLEREEYKDAQNWFKAAVEAGHIY--SLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKM 539 (967)
Q Consensus 462 ~lG~~~~~~g~y~~A~~~f~~al~~~~~~--a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~ 539 (967)
.+|..++..|++++|+..|+++++.+|.. +...++.++ ...+.+ ++|+
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---------------------------~~~~~~---~~a~ 53 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIH---------------------------FQCRRL---DRSA 53 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH---------------------------HHTTCH---HHHH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---------------------------HHcCCH---HHHH
Confidence 46888999999999999999999998844 344444444 344433 8899
Q ss_pred HHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002100 540 MDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPS 618 (967)
Q Consensus 540 ~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 618 (967)
..++++++.+|.++.+|..+|.++...|++++|+..|++++..+| +..++..+|.++...|++++|+..|+++++.+|+
T Consensus 54 ~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 133 (388)
T 1w3b_A 54 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred chHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHH
Q 002100 619 YMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAM 698 (967)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~ 698 (967)
+..++ ..++.++...+++++| +..|.++++.+|.+...+..+|.++...|++++|+
T Consensus 134 ~~~~~------~~l~~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 189 (388)
T 1w3b_A 134 LYCVR------SDLGNLLKALGRLEEA------------------KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp CTHHH------HHHHHHHHTTSCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred cHHHH------HHHHHHHHHccCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99888 7789999999999999 89999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcC
Q 002100 699 RSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRC 778 (967)
Q Consensus 699 ~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~ 778 (967)
..|+++++.+|++..++..+|.++...|++++|+..|++++.++|++.
T Consensus 190 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-------------------------------- 237 (388)
T 1w3b_A 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA-------------------------------- 237 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH--------------------------------
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH--------------------------------
Confidence 999999999999999999999999999999999999999999999666
Q ss_pred CCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHH
Q 002100 779 PSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYE 856 (967)
Q Consensus 779 ~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 856 (967)
.++.++|.++...|++++|+..|+++++.+ ...++..+|.++...|++++|+..|+++++..|+++.++.
T Consensus 238 --------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 309 (388)
T 1w3b_A 238 --------VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309 (388)
T ss_dssp --------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHH
Confidence 789999999999999999999999999854 4569999999999999999999999999999999999999
Q ss_pred HHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCC
Q 002100 857 KRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGD 930 (967)
Q Consensus 857 ~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~ 930 (967)
.++. .|++++|+..|+++++++|++..++..+|.++.+.|++++|+..|+++++++|+ ..++..+|.++..+|+
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9984 399999999999999999999999999999999999999999999999999999 5699999999988875
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-35 Score=357.05 Aligned_cols=436 Identities=10% Similarity=-0.025 Sum_probs=352.7
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCc-hhHHHHHHHHHHhcCChHHHHHHHHHHHhc------cCcchhHHHH
Q 002100 456 KQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH-IYSLVGVARTKFKRGHKYSAYKLMNSLISD------YTPVGWMYQE 528 (967)
Q Consensus 456 ~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~-~~a~~~la~~~~~~g~~~~A~~~l~~~i~~------~~~~g~~~~~ 528 (967)
....+..++..+...|++++|+..|++++...| ...+..++.++...|++.+|...+++++.. +...+.+|..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVK 162 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 345667778888888888888888888887655 355566778888888888888887776442 1223445555
Q ss_pred HhhcCChHHHHHHHHHhHhhC----------------CCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHH
Q 002100 529 RSLYCSGKEKMMDLNTATELD----------------PTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLEL 591 (967)
Q Consensus 529 ~~~y~~~~~A~~~~~~al~l~----------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 591 (967)
.+.+ ++|+..|++..... |.+..+|..+|.+|...|++++|++.|+++++.+| +..++..
T Consensus 163 ~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 163 LYDW---QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp TTCH---HHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhhH---HHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 5544 77777777532222 22367788888888888888888888888888888 6666665
Q ss_pred HHH--------------------------------------HHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHh
Q 002100 592 RAW--------------------------------------ISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVE 633 (967)
Q Consensus 592 la~--------------------------------------~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 633 (967)
++. .|...|++++|+..|+++++. |.+...+ ..++
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~------~~l~ 312 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLL------LCKA 312 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHH------HHHH
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHH------HHHH
Confidence 543 344567788888888887776 5556666 5667
Q ss_pred hhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhH
Q 002100 634 TLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHE 713 (967)
Q Consensus 634 ~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~ 713 (967)
.++...+++++| +..|+++++.+|.+...+..++.++...|++++|+..++++++..|++..
T Consensus 313 ~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 374 (597)
T 2xpi_A 313 DTLFVRSRFIDV------------------LAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAV 374 (597)
T ss_dssp HHHHHTTCHHHH------------------HHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHhcCHHHH------------------HHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHH
Confidence 778888888887 78888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhH
Q 002100 714 KLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLG 793 (967)
Q Consensus 714 a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg 793 (967)
++..+|.+|...|++++|+..|+++++++|++. .+|+.+|
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------------------------------~~~~~l~ 414 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG----------------------------------------PAWIGFA 414 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH----------------------------------------HHHHHHH
Confidence 888888888888888888888888887777544 7899999
Q ss_pred HHHHhcccHHHHHHHHHHHhccCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHH
Q 002100 794 SVYVDCEKLDLAADCYMNALNIKH--TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMA 867 (967)
Q Consensus 794 ~~~~~~g~~~~A~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A 867 (967)
.+|...|++++|++.|+++++..+ ..++..++.++...|++++|++.|+++++..|+++.+|..++.. |++++|
T Consensus 415 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 494 (597)
T 2xpi_A 415 HSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTA 494 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999988544 45899999999999999999999999999999999999998843 999999
Q ss_pred HHHHHHhhcc------CCCC-chHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHH
Q 002100 868 KSDLSMATQL------DPMR-TYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCE 939 (967)
Q Consensus 868 ~~~l~~al~l------~p~~-~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~ 939 (967)
+..|+++++. +|+. ..++..+|.++.+.|++++|+..|+++++..|+ ..++..+|.+|...|++++|+..|+
T Consensus 495 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999988 6664 678999999999999999999999999999997 5699999999999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHH
Q 002100 940 AALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 940 ~al~~~P~~~~~l~l~~r~~ 959 (967)
++++++|+++.+...+.++-
T Consensus 575 ~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 575 ESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHTT
T ss_pred HHHhcCCCChHHHHHHHHHH
Confidence 99999999999988887654
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.9e-33 Score=335.08 Aligned_cols=421 Identities=14% Similarity=0.073 Sum_probs=368.9
Q ss_pred ccchHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHh-CchhHHHHHHHHHHhcCChHHHHHHHH
Q 002100 435 KSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEA-GHIYSLVGVARTKFKRGHKYSAYKLMN 513 (967)
Q Consensus 435 ~~~~~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~-~~~~a~~~la~~~~~~g~~~~A~~~l~ 513 (967)
..+.+..+++.+....++ ...++.+|.++...|++++|+..|++++.. ....++..++.++.+.|++++|...|+
T Consensus 99 ~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 174 (597)
T 2xpi_A 99 QYKCAAFVGEKVLDITGN----PNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLG 174 (597)
T ss_dssp CHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred CchHHHHHHHHHHhhCCC----chHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHh
Confidence 445555666665544332 256788999999999999999999999766 336678889999999999999999999
Q ss_pred HHHhc-----------------------cCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHH---------
Q 002100 514 SLISD-----------------------YTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAI--------- 561 (967)
Q Consensus 514 ~~i~~-----------------------~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~--------- 561 (967)
+.... +...+.+|...+.+ ++|+..|+++++.+|++..++..++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 251 (597)
T 2xpi_A 175 ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF---DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEE 251 (597)
T ss_dssp SSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHH
T ss_pred ccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhH
Confidence 64332 22345555566655 99999999999999999988777654
Q ss_pred -----------------------------HHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 562 -----------------------------LLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 562 -----------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
.|...|++++|++.|+++++..++..++..++.+|...|++++|+..|+++
T Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 331 (597)
T 2xpi_A 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI 331 (597)
T ss_dssp HHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 344678999999999999988449999999999999999999999999999
Q ss_pred HHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhc
Q 002100 613 LTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLN 692 (967)
Q Consensus 613 l~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g 692 (967)
++.+|++..++ ..++.++...+++++| +..+.++++.+|.+...+..+|.+|...|
T Consensus 332 ~~~~~~~~~~~------~~l~~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 332 LEIDPYNLDVY------PLHLASLHESGEKNKL------------------YLISNDLVDRHPEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp HHHCTTCCTTH------HHHHHHHHHHTCHHHH------------------HHHHHHHHHHCTTSHHHHHHHHHHHHHTT
T ss_pred HHcCcccHHHH------HHHHHHHHHhCCHHHH------------------HHHHHHHHhhCcccHHHHHHHHHHHHHhc
Confidence 99999988888 6778889999999999 89999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHH
Q 002100 693 SQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLL 772 (967)
Q Consensus 693 ~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~l 772 (967)
++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++..|++.
T Consensus 388 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------------------- 441 (597)
T 2xpi_A 388 KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH-------------------------- 441 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS--------------------------
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch--------------------------
Confidence 999999999999999999999999999999999999999999999998888544
Q ss_pred HHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---
Q 002100 773 EEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEK--- 847 (967)
Q Consensus 773 e~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~--- 847 (967)
.+++.+|.+|...|++++|+++|+++++. ....++..++.++...|++++|++.|+++++.
T Consensus 442 --------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 442 --------------LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp --------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 78999999999999999999999999884 45568999999999999999999999999998
Q ss_pred ---ccCC-HHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHH
Q 002100 848 ---ARNN-ASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-QLL 918 (967)
Q Consensus 848 ---~p~~-~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-~~~ 918 (967)
.|++ ..+|..++. .|++++|+..|+++++++|+++.++..+|.+|...|++++|+..|+++++++|+. .++
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 587 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMAS 587 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Confidence 4443 678888884 3999999999999999999999999999999999999999999999999999994 588
Q ss_pred HHHHHHHH
Q 002100 919 HLRAAFHD 926 (967)
Q Consensus 919 ~~~a~~~~ 926 (967)
..++.+|.
T Consensus 588 ~~l~~~~~ 595 (597)
T 2xpi_A 588 DLLKRALE 595 (597)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHh
Confidence 88887764
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-33 Score=326.47 Aligned_cols=411 Identities=15% Similarity=0.063 Sum_probs=339.7
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCch-hHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcC
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHI-YSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYC 533 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~-~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~ 533 (967)
..+.+++.+|..++..|+|++|+..|+++++.+|. .++..++ .++...+.|
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la---------------------------~~~~~~g~~- 55 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLS---------------------------ACYVSVGDL- 55 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHH---------------------------HHHHHHTCH-
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHH---------------------------HHHHHHhhH-
Confidence 46778999999999999999999999999999873 3334444 445555544
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHH---HhcCHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISI---ALEDYDGALRDV 609 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~---~~g~~~~A~~~~ 609 (967)
++|+..++++++++|++..+++.+|.++...|++++|+..|++++...| +............ ......+++..+
T Consensus 56 --~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (514)
T 2gw1_A 56 --KKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDI 133 (514)
T ss_dssp --HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----
T ss_pred --HHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 4332222222222 222222222222
Q ss_pred HHHHHh------------------C------------------------CCchHHhhhhhhhhhHhhhHHH---hhchhh
Q 002100 610 RALLTL------------------D------------------------PSYMMFYGQLHGDNLVETLQPL---VQQWSQ 644 (967)
Q Consensus 610 ~~al~l------------------~------------------------p~~~~~~~~~~~~~~~~~l~~~---~~~~~~ 644 (967)
+.+... . |++...+ ...+..+.. .+++++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 207 (514)
T 2gw1_A 134 DTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKE------LMNGLSNLYKRSPESYDK 207 (514)
T ss_dssp -----------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHH------HHHHHHHHSSCCTTHHHH
T ss_pred HHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHH------HHHHHHHHHhhhhccHHH
Confidence 211100 0 2223333 444454443 667777
Q ss_pred HhhHHHHHhhhccccccchHHHHHHHHh-----c--C-------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 002100 645 ADCWMQLYDRWSSVDDIGSLAVVHHMLA-----N--D-------PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS 710 (967)
Q Consensus 645 A~~~~~l~~~~~~~d~~~al~~~~~~l~-----~--~-------p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~ 710 (967)
| +..+.++++ . + |..+..++.+|.++...|++++|+..|+++++.+|.
T Consensus 208 A------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~ 269 (514)
T 2gw1_A 208 A------------------DESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR 269 (514)
T ss_dssp H------------------HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC
T ss_pred H------------------HHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc
Confidence 7 888888888 5 4 445678899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHH
Q 002100 711 EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALN 790 (967)
Q Consensus 711 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~ 790 (967)
..++..+|.++...|++++|+..+++++..+|.+. .++.
T Consensus 270 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------------------------------~~~~ 308 (514)
T 2gw1_A 270 -VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS----------------------------------------SVYY 308 (514)
T ss_dssp -HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT----------------------------------------HHHH
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCH----------------------------------------HHHH
Confidence 99999999999999999999999999999988554 6889
Q ss_pred HhHHHHHhcccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CCh
Q 002100 791 NLGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDR 864 (967)
Q Consensus 791 ~lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~ 864 (967)
.+|.++...|++++|+..|+++++.. ...++..+|.++...|++++|+..++++++..|+++.++..++.. |++
T Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 388 (514)
T 2gw1_A 309 HRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDF 388 (514)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999999854 456999999999999999999999999999999999999998843 999
Q ss_pred HHHHHHHHHhhccCCCCch------HHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHH
Q 002100 865 DMAKSDLSMATQLDPMRTY------PYRYRAAVLMD---DHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHT 934 (967)
Q Consensus 865 ~~A~~~l~~al~l~p~~~~------~~~~la~~~~~---~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A 934 (967)
++|+..|+++++.+|++.. ++..+|.++.. .|++++|+..|+++++..|+ ..++..+|.++..+|++++|
T Consensus 389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999998866 99999999999 99999999999999999998 56899999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHh
Q 002100 935 QRDCEAALCLDPNHTDTLELYDKATE 960 (967)
Q Consensus 935 ~~~~~~al~~~P~~~~~l~l~~r~~~ 960 (967)
+..|+++++++|++++++..+.-.+.
T Consensus 469 ~~~~~~a~~~~~~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 469 ITLFEESADLARTMEEKLQAITFAEA 494 (514)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHH
Confidence 99999999999999998876654443
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=3.2e-32 Score=323.16 Aligned_cols=411 Identities=13% Similarity=0.081 Sum_probs=330.1
Q ss_pred chHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhH--HHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHh
Q 002100 453 SWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYS--LVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERS 530 (967)
Q Consensus 453 ~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a--~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~ 530 (967)
....+.+++.+|..++..|+|++|+..|+++++.+|... +..++. ++...+
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~---------------------------~~~~~g 73 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISA---------------------------CYISTG 73 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHH---------------------------HHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHH---------------------------HHHHcC
Confidence 345678899999999999999999999999999987443 444444 455555
Q ss_pred hcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHH
Q 002100 531 LYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDV 609 (967)
Q Consensus 531 ~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~ 609 (967)
.| ++|+..|+++++++|++..+++.+|.++...|++++|+..|+ ++..+| ....+ ...+...+...+|+..+
T Consensus 74 ~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~ 146 (537)
T 3fp2_A 74 DL---EKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGAS---IEPMLERNLNKQAMKVL 146 (537)
T ss_dssp CH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHH
T ss_pred CH---HHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHH---HHHHHHHHHHHHHHHHH
Confidence 44 999999999999999999999999999999999999999995 888888 33322 22455566678899999
Q ss_pred HHHHHhCCCchHHhhhhh-------------------------------hhhhH--------hhhHHHhhchhhHhhHHH
Q 002100 610 RALLTLDPSYMMFYGQLH-------------------------------GDNLV--------ETLQPLVQQWSQADCWMQ 650 (967)
Q Consensus 610 ~~al~l~p~~~~~~~~~~-------------------------------~~~~~--------~~l~~~~~~~~~A~~~~~ 650 (967)
++++...|.......... ....+ +......+++++|
T Consensus 147 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A----- 221 (537)
T 3fp2_A 147 NENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS----- 221 (537)
T ss_dssp HHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH-----
T ss_pred HHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH-----
Confidence 988877554331110000 00000 1111122334444
Q ss_pred HHhhhccccccchHHHHHHHHhcCCCChH-------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 002100 651 LYDRWSSVDDIGSLAVVHHMLANDPGKSL-------LRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILY 723 (967)
Q Consensus 651 l~~~~~~~d~~~al~~~~~~l~~~p~~~~-------~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~ 723 (967)
+..++++++.+|.++. ++..+|.++...|++++|+..|+++++.+|+ ..++..+|.++.
T Consensus 222 -------------~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~ 287 (537)
T 3fp2_A 222 -------------TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLA 287 (537)
T ss_dssp -------------HHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTC
T ss_pred -------------HHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHH
Confidence 8999999999999865 4677888999999999999999999999999 999999999999
Q ss_pred HcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHH
Q 002100 724 DTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLD 803 (967)
Q Consensus 724 ~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~ 803 (967)
..|++++|+..++++++.+|++. .++..+|.++...|+++
T Consensus 288 ~~~~~~~A~~~~~~~~~~~~~~~----------------------------------------~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLNPEYP----------------------------------------PTYYHRGQMYFILQDYK 327 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHCTTCH----------------------------------------HHHHHHHHHHHHTTCHH
T ss_pred HhcCHHHHHHHHHHHhccCCCCH----------------------------------------HHHHHHHHHHHhcCCHH
Confidence 99999999999999999999665 78999999999999999
Q ss_pred HHHHHHHHHhccC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhcc
Q 002100 804 LAADCYMNALNIK--HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQL 877 (967)
Q Consensus 804 ~A~~~~~~Al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l 877 (967)
+|+..|+++++.+ ...++..+|.++...|++++|+..++++++..|+++.++..++.. |++++|+..|+++++.
T Consensus 328 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 9999999999854 456999999999999999999999999999999999999999853 9999999999999999
Q ss_pred CCCCchH------HHHHHHHHHhC----------CCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 878 DPMRTYP------YRYRAAVLMDD----------HKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 878 ~p~~~~~------~~~la~~~~~~----------g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~ 940 (967)
+|++... +..+|.++... |++++|+..|+++++.+|+ ..++..+|.+|..+|++++|+..|++
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 8876544 55678899998 9999999999999999998 56999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHH
Q 002100 941 ALCLDPNHTDTLELYD 956 (967)
Q Consensus 941 al~~~P~~~~~l~l~~ 956 (967)
+++++|++.+......
T Consensus 488 al~~~~~~~~~~~~~~ 503 (537)
T 3fp2_A 488 SAILARTMDEKLQATT 503 (537)
T ss_dssp HHHHC--CHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHh
Confidence 9999999998876554
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=2.7e-30 Score=299.33 Aligned_cols=349 Identities=13% Similarity=0.090 Sum_probs=300.8
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
..+...+.+++..+|+++..++.+|..+...|++++|+..|++++..+| ++.++..+|.++...|++++|+..|+++++
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4566778888889999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh---HHHHHH-------
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS---LLRFRQ------- 684 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~---~~~~~~------- 684 (967)
.+|++..++ ..++.++...+++++| +..+.++++.+|.+. ..+..+
T Consensus 89 ~~p~~~~~~------~~l~~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 144 (450)
T 2y4t_A 89 LKMDFTAAR------LQRGHLLLKQGKLDEA------------------EDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ 144 (450)
T ss_dssp HCTTCHHHH------HHHHHHHHHTTCHHHH------------------HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHhcCCCChhhHHHHHHHHHHHHHH
Confidence 999998888 7788999999999999 899999999999887 665544
Q ss_pred -----HHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcC
Q 002100 685 -----SLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSS 759 (967)
Q Consensus 685 -----g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~ 759 (967)
|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..|+++++.+|++.
T Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------- 211 (450)
T 2y4t_A 145 RLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT------------- 211 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH-------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-------------
Confidence 67799999999999999999999999999999999999999999999999999999988665
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc--HHHHHHH------------H
Q 002100 760 LNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH--TRAHQGL------------A 825 (967)
Q Consensus 760 ~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--~~a~~~l------------a 825 (967)
.++..+|.+|...|++++|+..|+++++..+ ...+..+ |
T Consensus 212 ---------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 264 (450)
T 2y4t_A 212 ---------------------------EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 264 (450)
T ss_dssp ---------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999998443 3444444 9
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHccCCHH----HHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCC
Q 002100 826 RVYHLKNQRKAAYDEMTKLIEKARNNAS----AYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHK 897 (967)
Q Consensus 826 ~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~ 897 (967)
.++...|++++|+..|+++++..|+++. .+..++. .|++++|+..++++++++|+++.++..+|.++...|+
T Consensus 265 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 344 (450)
T 2y4t_A 265 EELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM 344 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999854 5666663 3999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCC-hHHHHHHHH------------HHHHcC-----ChHHHHHHHHH-HHhcCCCc
Q 002100 898 EAEAIAELSRAIAFKPD-LQLLHLRAA------------FHDSMG-----DHLHTQRDCEA-ALCLDPNH 948 (967)
Q Consensus 898 ~~eAi~~~~kal~~~p~-~~~~~~~a~------------~~~~~g-----~~~~A~~~~~~-al~~~P~~ 948 (967)
+++|+..|++++++.|+ ..++..++. +|..+| +.+++.+.|++ ++..+|++
T Consensus 345 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 345 YDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999 457777884 455556 67788999997 88888875
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.98 E-value=2.8e-29 Score=280.35 Aligned_cols=321 Identities=16% Similarity=0.105 Sum_probs=219.3
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHh
Q 002100 555 PYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVE 633 (967)
Q Consensus 555 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 633 (967)
.++.+|..++..|++++|+..|+++++.+| ++.++..+|.++...|++++|+..++++++.+|++..++ ..++
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~l~ 78 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAAR------LQRG 78 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH------HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHH------HHHH
Confidence 444445555555555555555555555444 444555555555555555555555555555555444444 3444
Q ss_pred hhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCC---CChHHHHH------------HHHHHHHhcCHHHHH
Q 002100 634 TLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDP---GKSLLRFR------------QSLLLLRLNSQKAAM 698 (967)
Q Consensus 634 ~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p---~~~~~~~~------------~g~~~~~~g~~~~A~ 698 (967)
.++...+++++| +..+.++++.+| .++..+.. +|.++...|++++|+
T Consensus 79 ~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 79 HLLLKQGKLDEA------------------EDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp HHHHHHTCHHHH------------------HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHcCChHHH------------------HHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 444444444444 444444444444 44444433 467777788888888
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcC
Q 002100 699 RSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRC 778 (967)
Q Consensus 699 ~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~ 778 (967)
..++++++..|+++.++..+|.++...|++++|+..++++++..|++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------------------------------- 188 (359)
T 3ieg_A 141 TFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT-------------------------------- 188 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCH--------------------------------
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--------------------------------
Confidence 888888888888888888888888888888888888888887777554
Q ss_pred CCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH--HHH------------HHHHHHHHHhCCHHHHHHHHHHH
Q 002100 779 PSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT--RAH------------QGLARVYHLKNQRKAAYDEMTKL 844 (967)
Q Consensus 779 ~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~--~a~------------~~la~~~~~~g~~~~A~~~~~~a 844 (967)
.++..+|.++...|++++|+..|+++++..+. .++ ..+|.++...|++++|+..++++
T Consensus 189 --------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 260 (359)
T 3ieg_A 189 --------EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 260 (359)
T ss_dssp --------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67777777777788888888888777773332 222 23366666666666666666666
Q ss_pred HHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHH
Q 002100 845 IEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAA 923 (967)
Q Consensus 845 l~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~ 923 (967)
++..|++...+ ..++..+|.++...|++++|+..|+++++.+|+ ..++..+|.
T Consensus 261 ~~~~~~~~~~~--------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 261 MKTEPSVAEYT--------------------------VRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHCCSSHHHH--------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhcCCCchHHH--------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 66555432211 134667999999999999999999999999997 569999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhhhc
Q 002100 924 FHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVNEQ 965 (967)
Q Consensus 924 ~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~~~ 965 (967)
++..+|++++|+..|+++++++|+++++...+.++....++.
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 356 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS 356 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998887654
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=7e-29 Score=287.45 Aligned_cols=384 Identities=15% Similarity=0.125 Sum_probs=302.7
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchh--HHHHHHHHHHhcCChHHHHHHHHHHHhccCcc
Q 002100 445 RLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIY--SLVGVARTKFKRGHKYSAYKLMNSLISDYTPV 522 (967)
Q Consensus 445 ~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~--a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~ 522 (967)
.+.+....+|..+.+++.+|..++..|+|++|+..|+++++.+|.. ++..++.
T Consensus 14 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~------------------------- 68 (450)
T 2y4t_A 14 GTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRAT------------------------- 68 (450)
T ss_dssp ---------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-------------------------
T ss_pred cccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHH-------------------------
Confidence 3444556678889999999999999999999999999999987743 4444444
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-Ch---hHHHHH------
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SP---DCLELR------ 592 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~---~~~~~l------ 592 (967)
++...+.+ ++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+| +. .++..+
T Consensus 69 --~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 143 (450)
T 2y4t_A 69 --VFLAMGKS---KAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM 143 (450)
T ss_dssp --HHHHTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHCCCH---HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 44444444 8999999999999999999999999999999999999999999999999 55 665544
Q ss_pred ------HHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHH
Q 002100 593 ------AWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAV 666 (967)
Q Consensus 593 ------a~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~ 666 (967)
|.++...|++++|+..|+++++.+|++..++ ..++.++...+++++| +..
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~l~~~~~~~g~~~~A------------------~~~ 199 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR------ELRAECFIKEGEPRKA------------------ISD 199 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCGGGG------------------HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH------HHHHHHHHHCCCHHHH------------------HHH
Confidence 6779999999999999999999999988888 7788999999999998 899
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHH------------HHHHHHcCChHHHHHH
Q 002100 667 VHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYE------------GWILYDTGHREEALAK 734 (967)
Q Consensus 667 ~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~l------------g~~~~~~g~~~eA~~~ 734 (967)
+.++++.+|.++..+..+|.++...|++++|+..|++++...|++...+..+ |.++...|++++|+..
T Consensus 200 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 279 (450)
T 2y4t_A 200 LKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSK 279 (450)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999988877665 8899999999999999
Q ss_pred HHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc
Q 002100 735 AEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN 814 (967)
Q Consensus 735 ~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 814 (967)
|++++++.|++.. .....+..+|.++...|++++|+..|+++++
T Consensus 280 ~~~~l~~~p~~~~------------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 280 YESVMKTEPSIAE------------------------------------YTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHCCSSHH------------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcchH------------------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999988886541 0125788889999999999999999999887
Q ss_pred c--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 002100 815 I--KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVL 892 (967)
Q Consensus 815 ~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~ 892 (967)
. +...++..+|.++...|++++|+..|+++++.+|++..++..++.. .....+.-. . ..|
T Consensus 324 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~------~~~~~~~~~-----~-------~~y 385 (450)
T 2y4t_A 324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA------QRLLKQSQK-----R-------DYY 385 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH------HHHHHHHHS-----C-------CSG
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH------HHHhhcccc-----h-------hHH
Confidence 4 4456899999999999999999999999999999988888877632 000000000 0 112
Q ss_pred HhCC-----CHHHHHHHHHH-HHhcCCCh----H-------HHHHHHHHHHHcCChHHHHH
Q 002100 893 MDDH-----KEAEAIAELSR-AIAFKPDL----Q-------LLHLRAAFHDSMGDHLHTQR 936 (967)
Q Consensus 893 ~~~g-----~~~eAi~~~~k-al~~~p~~----~-------~~~~~a~~~~~~g~~~~A~~ 936 (967)
...| +.+++.+.|.+ +++..|+. . .+..++.+|..++|.+++..
T Consensus 386 ~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 386 KILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp GGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred HHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 2222 55666777775 66666651 1 55667888888888776543
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-29 Score=297.59 Aligned_cols=396 Identities=14% Similarity=0.079 Sum_probs=325.6
Q ss_pred hccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHH
Q 002100 517 SDYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWI 595 (967)
Q Consensus 517 ~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~ 595 (967)
+.+...|..+...+.| ++|+..|+++++.+| ++.++..+|.++...|++++|+..|+++++.+| +..++..+|.+
T Consensus 7 ~~~~~~g~~~~~~g~~---~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKY---DDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCH---HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccH---HHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 3455678888888866 999999999999999 589999999999999999999999999999999 89999999999
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHH-------------------Hhhhc
Q 002100 596 SIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQL-------------------YDRWS 656 (967)
Q Consensus 596 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l-------------------~~~~~ 656 (967)
+..+|++++|+..|++++..+|.+....... ............+.++ +.. .....
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPM---LERNLNKQAMSKLKEK---FGDIDTATATPTELSTQPAKERKDKQE 156 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHH---HHHHHHHHHHHHHTTC------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHH---HHHHHHHHHHHHHHHH---HHHHHHHHHhhhhccCChhhHHHhhcc
Confidence 9999999999999999999999766554211 0111111111111111 000 00000
Q ss_pred cccccchHHHHHHHHhc--------CCCChHHHHHHHHHHHH---hcCHHHHHHHHHHHHh-----c---------CCch
Q 002100 657 SVDDIGSLAVVHHMLAN--------DPGKSLLRFRQSLLLLR---LNSQKAAMRSLRLARN-----Y---------STSE 711 (967)
Q Consensus 657 ~~d~~~al~~~~~~l~~--------~p~~~~~~~~~g~~~~~---~g~~~~A~~~l~~al~-----~---------~p~~ 711 (967)
.......+..+...... .|.++..++.+|..+.. .|++++|+..|+++++ . .|.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (514)
T 2gw1_A 157 NLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236 (514)
T ss_dssp CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred CCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHH
Confidence 00010011111111111 14557888999998887 9999999999999999 5 3566
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHH
Q 002100 712 HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNN 791 (967)
Q Consensus 712 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~ 791 (967)
..++..+|.++...|++++|+..++++++.+|+ . .++..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~----------------------------------------~~~~~ 275 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-V----------------------------------------NSYIY 275 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-H----------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-H----------------------------------------HHHHH
Confidence 788999999999999999999999999999885 4 78999
Q ss_pred hHHHHHhcccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChH
Q 002100 792 LGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRD 865 (967)
Q Consensus 792 lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~ 865 (967)
+|.++...|++++|+..|+++++.+ ...++..+|.++...|++++|+..|+++++..|++..++..++.. ++++
T Consensus 276 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 355 (514)
T 2gw1_A 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFD 355 (514)
T ss_dssp HHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999954 456999999999999999999999999999999999999999842 9999
Q ss_pred HHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-H------HHHHHHHHHHH---cCChHHHH
Q 002100 866 MAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-Q------LLHLRAAFHDS---MGDHLHTQ 935 (967)
Q Consensus 866 ~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-~------~~~~~a~~~~~---~g~~~~A~ 935 (967)
+|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|+. . ++..+|.++.. .|++++|+
T Consensus 356 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 356 DCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999988874 2 89999999999 99999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 002100 936 RDCEAALCLDPNHTDTLELYDKATERVN 963 (967)
Q Consensus 936 ~~~~~al~~~P~~~~~l~l~~r~~~~~~ 963 (967)
..|+++++.+|++..++..+.++....+
T Consensus 436 ~~~~~a~~~~~~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 436 NLLEKASKLDPRSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 9999999999999998877777665443
No 11
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=294.80 Aligned_cols=336 Identities=11% Similarity=0.061 Sum_probs=245.7
Q ss_pred CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC---------ChhHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCC
Q 002100 549 DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV---------SPDCLELRAWISIAL--EDYDGALRDVRALLTLDP 617 (967)
Q Consensus 549 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------~~~~~~~la~~~~~~--g~~~~A~~~~~~al~l~p 617 (967)
+|....+|.++|.+|..+|++++|+..|++++.+.+ .+.++..+|+.+... ++|++|+..|+++++++|
T Consensus 90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p 169 (472)
T 4g1t_A 90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP 169 (472)
T ss_dssp TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence 566677888899999999999999999999887632 356777888777665 478999999999999999
Q ss_pred CchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH----hcC
Q 002100 618 SYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLR----LNS 693 (967)
Q Consensus 618 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~----~g~ 693 (967)
+++.++ ..++.+....+++.++ ..|+..++++++.+|.++.++..+|..+.. .++
T Consensus 170 ~~~~~~------~~~~~~~~~l~~~~~~---------------~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 228 (472)
T 4g1t_A 170 KNPEFT------SGLAIASYRLDNWPPS---------------QNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEE 228 (472)
T ss_dssp TCHHHH------HHHHHHHHHHHHSCCC---------------CCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-----
T ss_pred CCHHHH------HHHHHHHHHhcCchHH---------------HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhH
Confidence 998887 5556666555555443 345889999999999998888888776654 467
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHH
Q 002100 694 QKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLE 773 (967)
Q Consensus 694 ~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le 773 (967)
+++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|++.
T Consensus 229 ~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--------------------------- 281 (472)
T 4g1t_A 229 EGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA--------------------------- 281 (472)
T ss_dssp -CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------------------
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH---------------------------
Confidence 78899999999999999999999999999999999999999999999999766
Q ss_pred HHhcCCCCCCchHHHHHHhHHHH-------------------HhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhC
Q 002100 774 EALRCPSDGLRKGQALNNLGSVY-------------------VDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKN 832 (967)
Q Consensus 774 ~~~~~~~~~~~~~~a~~~lg~~~-------------------~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g 832 (967)
.++.++|.+| ...+.+++|+..|+++++.++.. ++..+|.++...|
T Consensus 282 -------------~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 282 -------------YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred -------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 3333333333 33456788999999999865554 8899999999999
Q ss_pred CHHHHHHHHHHHHHHccCCHH---HHHHHHc-----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHH
Q 002100 833 QRKAAYDEMTKLIEKARNNAS---AYEKRSE-----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAE 904 (967)
Q Consensus 833 ~~~~A~~~~~~al~~~p~~~~---~~~~~~~-----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~ 904 (967)
++++|+..|+++++..|++.. ++...+. .+++++|+..|+++++++|+...... ....+...
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~----------~~~~l~~~ 418 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK----------MKDKLQKI 418 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH----------HHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH----------HHHHHHHH
Confidence 999999999999999887544 2444442 38899999999999999998754322 23456677
Q ss_pred HHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 002100 905 LSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELY 955 (967)
Q Consensus 905 ~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~ 955 (967)
++++++.+|+ ..++..+|.+|..+|++++|++.|++||++.|.+|.+...+
T Consensus 419 ~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 419 AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 8899999998 56999999999999999999999999999999988775543
No 12
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=8e-30 Score=297.63 Aligned_cols=369 Identities=12% Similarity=0.035 Sum_probs=266.7
Q ss_pred hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhC---------c--hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcc
Q 002100 454 WQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAG---------H--IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPV 522 (967)
Q Consensus 454 ~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~---------~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~ 522 (967)
...+..+..||.++..+|+|++|+++|++|+++. + ..++..+|.+|..+|++
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~----------------- 110 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRL----------------- 110 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCH-----------------
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCCh-----------------
Confidence 3446678889999999999999999999999872 1 12233455555555555
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhh--------CCCCchhHHHHHHHHHh--cCcHHHHHHHHHHHhccCC-ChhHHHH
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATEL--------DPTLSYPYKYRAILLVE--ENKLAAAITEINRIIGFKV-SPDCLEL 591 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l--------~P~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-~~~~~~~ 591 (967)
++|+..|++++++ .+..+.++..+|.++.. .++|++|++.|+++++++| +++++..
T Consensus 111 -------------~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~ 177 (472)
T 4g1t_A 111 -------------SDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177 (472)
T ss_dssp -------------HHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred -------------HHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5555555555544 23445667777766655 4579999999999999999 8999988
Q ss_pred HHHHHHHh---cCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhH----HHhhchhhHhhHHHHHhhhccccccchH
Q 002100 592 RAWISIAL---EDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQ----PLVQQWSQADCWMQLYDRWSSVDDIGSL 664 (967)
Q Consensus 592 la~~~~~~---g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~----~~~~~~~~A~~~~~l~~~~~~~d~~~al 664 (967)
++.++..+ +++++|++.|+++++++|++..++ ..++..+ ...+++++| +
T Consensus 178 ~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~------~~l~~~~~~~~~~~~~~~~a------------------~ 233 (472)
T 4g1t_A 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLK------VLLALKLHKMREEGEEEGEG------------------E 233 (472)
T ss_dssp HHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHH------HHHHHHHHHCC------CHH------------------H
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHH------HHHHHHHHHHHhhhhHHHHH------------------H
Confidence 88886654 667889999999999999998877 3344333 334455555 8
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcC------------------
Q 002100 665 AVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTG------------------ 726 (967)
Q Consensus 665 ~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g------------------ 726 (967)
..+++++..+|..+.++..+|.+|...|++++|+..|+++++.+|+++.++..+|.+|...+
T Consensus 234 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~ 313 (472)
T 4g1t_A 234 KLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313 (472)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHH
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999998886532
Q ss_pred -ChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHH
Q 002100 727 -HREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLA 805 (967)
Q Consensus 727 -~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A 805 (967)
.+++|+..++++++++|.+. .++..+|.+|...|++++|
T Consensus 314 ~~~~~A~~~~~~a~~~~~~~~----------------------------------------~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 314 ELIGHAVAHLKKADEANDNLF----------------------------------------RVCSILASLHALADQYEEA 353 (472)
T ss_dssp HHHHHHHHHHHHHHHHCTTTC----------------------------------------CCHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHhhcCCchh----------------------------------------hhhhhHHHHHHHhccHHHH
Confidence 34556666666666666433 6788999999999999999
Q ss_pred HHHHHHHhccCcHH-----HHHHHHHH-HHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCC
Q 002100 806 ADCYMNALNIKHTR-----AHQGLARV-YHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDP 879 (967)
Q Consensus 806 ~~~~~~Al~~~~~~-----a~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p 879 (967)
+.+|+++++.++.. .+..+|.+ +...|++++|+..|++++++.|++...... ...+...++++++.+|
T Consensus 354 ~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~------~~~l~~~~~~~l~~~p 427 (472)
T 4g1t_A 354 EYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM------KDKLQKIAKMRLSKNG 427 (472)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH------HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH------HHHHHHHHHHHHHhCC
Confidence 99999999855432 46667765 457899999999999999999987654333 2455677889999999
Q ss_pred CCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHH
Q 002100 880 MRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRA 922 (967)
Q Consensus 880 ~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a 922 (967)
.++.++.++|.+|...|++++|+++|++|+++.|. +.+...+|
T Consensus 428 ~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 428 ADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp -CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 99999999999999999999999999999999887 44554444
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=1.4e-29 Score=300.35 Aligned_cols=370 Identities=16% Similarity=0.104 Sum_probs=302.3
Q ss_pred chhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc
Q 002100 522 VGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE 600 (967)
Q Consensus 522 ~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g 600 (967)
.|..+...+.| ++|+..|+++++.+|+++.++..+|.++..+|++++|++.|+++++.+| ++.++..+|.++..+|
T Consensus 31 ~g~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 107 (537)
T 3fp2_A 31 RGNHFFTAKNF---NEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG 107 (537)
T ss_dssp HHHHHHHTTCC---C-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccH---HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC
Confidence 46667777766 9999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc-------
Q 002100 601 DYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN------- 673 (967)
Q Consensus 601 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~------- 673 (967)
++++|+..|+ ++..+|+....... .+...+...+| +..+.+++..
T Consensus 108 ~~~~A~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~a------------------~~~~~~~l~~~~~~~~~ 159 (537)
T 3fp2_A 108 NFTDAMFDLS-VLSLNGDFDGASIE---------PMLERNLNKQA------------------MKVLNENLSKDEGRGSQ 159 (537)
T ss_dssp CHHHHHHHHH-HHC--------------------CHHHHHHHHHH------------------HHHHHHHCC-------C
T ss_pred CHHHHHHHHH-HHhcCCCCChHHHH---------HHHHHHHHHHH------------------HHHHHHHHHhCcccccc
Confidence 9999999995 88888887765521 11111222233 3333333332
Q ss_pred ------------------------------CCCChHHHHHHH--------HHHHHhcCHHHHHHHHHHHHhcCCchhH--
Q 002100 674 ------------------------------DPGKSLLRFRQS--------LLLLRLNSQKAAMRSLRLARNYSTSEHE-- 713 (967)
Q Consensus 674 ------------------------------~p~~~~~~~~~g--------~~~~~~g~~~~A~~~l~~al~~~p~~~~-- 713 (967)
++........++ ......+++++|+..|+++++.+|+++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~ 239 (537)
T 3fp2_A 160 VLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLR 239 (537)
T ss_dssp CCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHH
T ss_pred ccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhh
Confidence 122112222222 2233456899999999999999999755
Q ss_pred -----HHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHH
Q 002100 714 -----KLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQA 788 (967)
Q Consensus 714 -----a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a 788 (967)
++..+|.++...|++++|+..++++++++|+ . .+
T Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~----------------------------------------~~ 278 (537)
T 3fp2_A 240 ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-P----------------------------------------NS 278 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-H----------------------------------------HH
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-c----------------------------------------hH
Confidence 5778889999999999999999999999885 4 68
Q ss_pred HHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----C
Q 002100 789 LNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----C 862 (967)
Q Consensus 789 ~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~ 862 (967)
+..+|.++...|++++|+.+|+++++. +...++..+|.++...|++++|+..|+++++..|++..++..++.. |
T Consensus 279 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 358 (537)
T 3fp2_A 279 YIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQG 358 (537)
T ss_dssp HHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 899999999999999999999999984 4556999999999999999999999999999999999999999853 9
Q ss_pred ChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHHc-------
Q 002100 863 DRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-------QLLHLRAAFHDSM------- 928 (967)
Q Consensus 863 ~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-------~~~~~~a~~~~~~------- 928 (967)
++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|+. ..+..+|.++..+
T Consensus 359 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 438 (537)
T 3fp2_A 359 KFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQ 438 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchh
Confidence 99999999999999999999999999999999999999999999999987652 2467789999999
Q ss_pred ---CChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 002100 929 ---GDHLHTQRDCEAALCLDPNHTDTLELYDKATERVN 963 (967)
Q Consensus 929 ---g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~ 963 (967)
|++++|+..|+++++.+|++..++..+..+....+
T Consensus 439 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 439 LDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998887777665543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.96 E-value=9.9e-28 Score=267.73 Aligned_cols=328 Identities=14% Similarity=0.170 Sum_probs=269.8
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALED 601 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~ 601 (967)
|..+...+.| ++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+| ++.++..+|.++...|+
T Consensus 10 ~~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 10 GKKLLAAGQL---ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGK 86 (359)
T ss_dssp HHHHHHTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCH---HHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCC
Confidence 5555666655 9999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHHhCC---CchHHhhhhh------hhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHh
Q 002100 602 YDGALRDVRALLTLDP---SYMMFYGQLH------GDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLA 672 (967)
Q Consensus 602 ~~~A~~~~~~al~l~p---~~~~~~~~~~------~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~ 672 (967)
+++|+..|+++++.+| ++...+..+. .....+.++...+++++| +..+.++++
T Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A------------------~~~~~~~~~ 148 (359)
T 3ieg_A 87 LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAA------------------ITFLDKILE 148 (359)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH------------------HHHHHHHHH
Confidence 9999999999999999 8777763210 011225677777777777 999999999
Q ss_pred cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Q 002100 673 NDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKA 752 (967)
Q Consensus 673 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 752 (967)
.+|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++.+|+....+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-- 226 (359)
T 3ieg_A 149 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA-- 226 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH--
T ss_pred hCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997662111
Q ss_pred HHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH------HHHHHHHH
Q 002100 753 YALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT------RAHQGLAR 826 (967)
Q Consensus 753 ~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~------~a~~~la~ 826 (967)
.+... ........+|.++...|++++|+..|+++++..+. .++..+|.
T Consensus 227 ------------------~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 227 ------------------HYKQV--------KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICH 280 (359)
T ss_dssp ------------------HHHHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred ------------------HHHHH--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 11000 01245667799999999999999999999984433 25777999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHH
Q 002100 827 VYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELS 906 (967)
Q Consensus 827 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~ 906 (967)
++...|++++|+..|+++++.+|+ ++.++..+|.++...|++++|+..|+
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~g~~~~A~~~~~ 330 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQMEPD------------------------------NVNALKDRAEAYLIEEMYDEAIQDYE 330 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999998888876654 44566666777777777777777777
Q ss_pred HHHhcCCCh-HHHHHHHHHHHHcC
Q 002100 907 RAIAFKPDL-QLLHLRAAFHDSMG 929 (967)
Q Consensus 907 kal~~~p~~-~~~~~~a~~~~~~g 929 (967)
++++++|+. .++..++.++..++
T Consensus 331 ~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 331 AAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCChHHHHHHHHHHHHHH
Confidence 777777763 35555555555443
No 15
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.96 E-value=1.3e-29 Score=269.50 Aligned_cols=201 Identities=13% Similarity=0.195 Sum_probs=165.8
Q ss_pred cccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCC--CCccceEEeccCCCCHHHHHHHHHh
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFI--ESRREKVNFSQNGISVEAMRAAEEF 315 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~--e~~~~~i~~~~~~~~~~~~~~~l~~ 315 (967)
+...+...+.++++++.+|||+|+|+|++|+|||.|||++|+||++||.+++. |+...+|++++ +++++|+.+++|
T Consensus 14 ~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~--v~~~~f~~ll~~ 91 (256)
T 3hve_A 14 HAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEG--ISVMVMREILDY 91 (256)
T ss_dssp THHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSS--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCC--CCHHHHHHHHhh
Confidence 34455567778889999999999999999999999999999999999999887 67788999977 999999999999
Q ss_pred HcCCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhh-----
Q 002100 316 SRTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELP----- 390 (967)
Q Consensus 316 ~Yt~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~----- 390 (967)
+|||++ .++.+++.+++.+|++|+++.|++.|+++|.+.++ ++||+.++.+|..|+++.|.+.|.+||.+||.
T Consensus 92 ~Yt~~~-~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~-~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~ 169 (256)
T 3hve_A 92 IFSGQI-RLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIA-AENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSST 169 (256)
T ss_dssp HHHSCC-CCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCC-SSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCCC-cccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCC-HhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCC
Confidence 999999 89999999999999999999999999999999999 99999999999999999999999999999998
Q ss_pred ---hcCCchhHhhhhccchHHHHHHhhcchHHHHHHHHHHhccCcccccchHHHHHHHHH
Q 002100 391 ---CSMQNPNVMRIFCSAEARERLAMVGHASFVLYYFLSQIGMEEDMKSNTTVMLLERLV 447 (967)
Q Consensus 391 ---~~l~~~~~~~ll~s~~~~~r~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~ll~~l~ 447 (967)
..++.+.+..++.++++. +.+|..+|.+++.|+..+++.|......+++++.
T Consensus 170 ~~f~~L~~~~l~~lL~~d~L~-----v~~E~~v~~av~~W~~~~~~~R~~~~~~ll~~VR 224 (256)
T 3hve_A 170 EEFLELSPQKLKEVISLEKLN-----VGNERYVFEAVIRWIAHDTEIRKVHMKDVMSALW 224 (256)
T ss_dssp HHHHSSCHHHHHHHHHCC------------CTTHHHHTTTCCC--CCSTTTHHHHHHHHH
T ss_pred cchhcCCHHHHHHHHccCCCC-----CCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCC
Confidence 356666777788888888 7888999999999999998888888888887753
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=2.6e-26 Score=253.34 Aligned_cols=290 Identities=12% Similarity=0.025 Sum_probs=246.7
Q ss_pred HHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCch
Q 002100 542 LNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYM 620 (967)
Q Consensus 542 ~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 620 (967)
....+...|+++..+..+|..++..|++++|+..|++++..+| +..++..++.++...|++++|+..++++++.+|++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 4456667788999999999999999999999999999999999 889999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhHhhhHHHhh-chhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHH
Q 002100 621 MFYGQLHGDNLVETLQPLVQ-QWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMR 699 (967)
Q Consensus 621 ~~~~~~~~~~~~~~l~~~~~-~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~ 699 (967)
.++ ..++.++...+ ++++| +..+.++++.+|.++..+..+|.++...|++++|+.
T Consensus 91 ~~~------~~l~~~~~~~~~~~~~A------------------~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 146 (330)
T 3hym_B 91 VSW------FAVGCYYLMVGHKNEHA------------------RRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMA 146 (330)
T ss_dssp HHH------HHHHHHHHHSCSCHHHH------------------HHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHH------HHHHHHHHHhhhhHHHH------------------HHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHH
Confidence 988 77899999999 89888 999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCC
Q 002100 700 SLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCP 779 (967)
Q Consensus 700 ~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~ 779 (967)
.|+++++..|++..++..+|.++...|++++|+..++++++.+|++.
T Consensus 147 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--------------------------------- 193 (330)
T 3hym_B 147 AYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP--------------------------------- 193 (330)
T ss_dssp HHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH---------------------------------
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCh---------------------------------
Confidence 99999999999999999999999999999999999999999999655
Q ss_pred CCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC-----------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 002100 780 SDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK-----------HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKA 848 (967)
Q Consensus 780 ~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~-----------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 848 (967)
.++..+|.++...|++++|+.+|+++++.. ...++..+|.++...|++++|+..|+++++..
T Consensus 194 -------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 194 -------FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp -------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -------HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 789999999999999999999999999832 23589999999999999999999988888776
Q ss_pred cCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHH
Q 002100 849 RNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFH 925 (967)
Q Consensus 849 p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~ 925 (967)
|++ +.++..+|.++...|++++|+..|+++++++|+ ..++..++.++
T Consensus 267 ~~~------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 267 PQN------------------------------ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp TTC------------------------------SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred ccc------------------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 654 455555666666666666666666666666655 33555555555
No 17
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.95 E-value=4.1e-29 Score=269.11 Aligned_cols=201 Identities=19% Similarity=0.268 Sum_probs=172.8
Q ss_pred cccccccccccccCCCCcccEEEEEc---CeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEecc----CCCCHHHHH
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIG---NDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQ----NGISVEAMR 310 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~---~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~----~~~~~~~~~ 310 (967)
+...+...+.+++.++.+|||+|+|+ |++|+|||+|||++|+||++||.++|.|+...+|+|++ +++++++|+
T Consensus 15 h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~ 94 (279)
T 3i3n_A 15 HCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVE 94 (279)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHH
Confidence 34455566777888899999999998 99999999999999999999999999999999999971 149999999
Q ss_pred HHHHhHcCCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhh
Q 002100 311 AAEEFSRTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELP 390 (967)
Q Consensus 311 ~~l~~~Yt~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~ 390 (967)
.+++|+|||++ .++.+++.+++.+|++|+++.|++.|+++|.+.++ ++||+.++.+|..|+++.|.+.|.+||.+||.
T Consensus 95 ~ll~~~Ytg~~-~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~-~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~ 172 (279)
T 3i3n_A 95 AVIEYMYTGRI-RVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLH-LSNCVAIHSLAHMYTLSQLALKAADMIRRNFH 172 (279)
T ss_dssp HHHHHHHHSEE-EEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHH
T ss_pred HHHHhhCcCCc-ccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCC-cchHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 99999999999 89999999999999999999999999999999999 99999999999999999999999999999998
Q ss_pred h--------cCCchhHhhhhccchHHHHHHhhcchHHHHHHHHHHhccCcccccchHHHHHHH
Q 002100 391 C--------SMQNPNVMRIFCSAEARERLAMVGHASFVLYYFLSQIGMEEDMKSNTTVMLLER 445 (967)
Q Consensus 391 ~--------~l~~~~~~~ll~s~~~~~r~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~ll~~ 445 (967)
. .++.+.+..++.++++. +.+|..+|.+++.|+..+.+.+......++..
T Consensus 173 ~v~~~~~f~~L~~~~l~~lL~~d~L~-----v~sE~~vf~av~~W~~~~~~~r~~~~~~ll~~ 230 (279)
T 3i3n_A 173 KVIQDEEFYTLPFHLIRDWLSDLEIT-----VDSEEVLFETVLKWVQRNAEERERYFEELFKL 230 (279)
T ss_dssp HHTTSSGGGGSCHHHHHHHHTCSSCC-----CSCHHHHHHHHHHHHHTTHHHHTTTHHHHHTT
T ss_pred HHhcCcChhcCCHHHHHHHhcCcCCC-----CCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 4 55666777788888888 88899999999999998877777777777654
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=7e-25 Score=257.40 Aligned_cols=386 Identities=11% Similarity=0.016 Sum_probs=308.6
Q ss_pred HHHHHHHHHHHHHhh----cCChHHHHHHHHHHHHhCchhHHHHHHHHHHh----cCChHHHHHHHHHHHhccCcchhHH
Q 002100 455 QKQLAFHQLGVVMLE----REEYKDAQNWFKAAVEAGHIYSLVGVARTKFK----RGHKYSAYKLMNSLISDYTPVGWMY 526 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~----~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~----~g~~~~A~~~l~~~i~~~~~~g~~~ 526 (967)
..+.+++.+|..|+. .+++++|+.+|+++++.++..+...|+.+|.. .++
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~---------------------- 94 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQD---------------------- 94 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC----------------------
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCC----------------------
Confidence 456789999999999 99999999999999999888888888887755 333
Q ss_pred HHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHh----cCcHHHHHHHHHHHhccCCChhHHHHHHHHHHH----
Q 002100 527 QERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVE----ENKLAAAITEINRIIGFKVSPDCLELRAWISIA---- 598 (967)
Q Consensus 527 ~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~---- 598 (967)
.++|+..|+++.+. .++.+++.+|.+|.. .+++++|+..|+++.... ++.+++.+|.+|..
T Consensus 95 --------~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~ 163 (490)
T 2xm6_A 95 --------YAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-RDSGQQSMGDAYFEGDGV 163 (490)
T ss_dssp --------HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSS
T ss_pred --------HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCC
Confidence 36777777777654 467788888988888 889999999999887643 67888889999888
Q ss_pred hcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHH----hhchhhHhhHHHHHhhhccccccchHHHHHHHHhcC
Q 002100 599 LEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPL----VQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAND 674 (967)
Q Consensus 599 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~----~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~ 674 (967)
.+++++|+..|+++++. +++.++ +.++.++.. .+++++| +..|.++++.
T Consensus 164 ~~d~~~A~~~~~~a~~~--~~~~a~------~~Lg~~y~~g~g~~~~~~~A------------------~~~~~~a~~~- 216 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAEQ--GNVWSC------NQLGYMYSRGLGVERNDAIS------------------AQWYRKSATS- 216 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHH------HHHHHHHHHTSSSCCCHHHH------------------HHHHHHHHHT-
T ss_pred CCCHHHHHHHHHHHHHC--CCHHHH------HHHHHHHhcCCCCCcCHHHH------------------HHHHHHHHHC-
Confidence 78899999999998876 355555 667777776 6677777 7888888765
Q ss_pred CCChHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccchH
Q 002100 675 PGKSLLRFRQSLLLLR----LNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYD----TGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 675 p~~~~~~~~~g~~~~~----~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~ 746 (967)
.++..++.+|.+|.. .+++++|+..|+++++. .++.+++.+|.++.. .+++++|+.+|+++++... .
T Consensus 217 -~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~--~ 291 (490)
T 2xm6_A 217 -GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGN--S 291 (490)
T ss_dssp -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTC--H
T ss_pred -CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCC--H
Confidence 457788888888887 78899999999998876 456788889999888 8899999999998875432 2
Q ss_pred HHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc-----ccHHHHHHHHHHHhccCcHHHH
Q 002100 747 AFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC-----EKLDLAADCYMNALNIKHTRAH 821 (967)
Q Consensus 747 ~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~-----g~~~~A~~~~~~Al~~~~~~a~ 821 (967)
.+++++|.+|... +++++|+.+|+++++.++..++
T Consensus 292 ----------------------------------------~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~ 331 (490)
T 2xm6_A 292 ----------------------------------------DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQ 331 (490)
T ss_dssp ----------------------------------------HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ----------------------------------------HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHH
Confidence 5778888888887 8999999999999998888899
Q ss_pred HHHHHHHHHhC---CHHHHHHHHHHHHHHccCCHHHHHHHHc--------cCChHHHHHHHHHhhccCCCCchHHHHHHH
Q 002100 822 QGLARVYHLKN---QRKAAYDEMTKLIEKARNNASAYEKRSE--------YCDRDMAKSDLSMATQLDPMRTYPYRYRAA 890 (967)
Q Consensus 822 ~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~--------~~~~~~A~~~l~~al~l~p~~~~~~~~la~ 890 (967)
+.+|.+|...| ++++|+.+|+++++. .++.+++.+|. .+++++|+..|+++++.. ++.++.++|.
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~ 407 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Confidence 99999988866 788899999998876 56777777773 268888999999888764 5788999999
Q ss_pred HHHh----CCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhH
Q 002100 891 VLMD----DHKEAEAIAELSRAIAFKPD----LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDT 951 (967)
Q Consensus 891 ~~~~----~g~~~eAi~~~~kal~~~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 951 (967)
+|.. .+++++|+.+|+++++..|+ +.+...++.++.. +.+.|.+..++.++..|++..+
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~~~~ 474 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPEAWA 474 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 89999999999999999854 2367777776654 4566666666666666665544
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=6.5e-26 Score=250.15 Aligned_cols=299 Identities=14% Similarity=0.081 Sum_probs=264.9
Q ss_pred HHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhh
Q 002100 577 NRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRW 655 (967)
Q Consensus 577 ~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~ 655 (967)
...+...| +++.+..+|..+...|++++|+..|+++++.+|.+...+ ...+.++...+++++|
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~------~~~~~~~~~~~~~~~A---------- 75 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCL------PVHIGTLVELNKANEL---------- 75 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTH------HHHHHHHHHHTCHHHH----------
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhH------HHHHHHHHHhhhHHHH----------
Confidence 34444455 788999999999999999999999999999999998877 6677888899999999
Q ss_pred ccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHH
Q 002100 656 SSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLN-SQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAK 734 (967)
Q Consensus 656 ~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~ 734 (967)
+..+.++++.+|.++..++.+|.++...| ++++|+..|+++++.+|+++.++..+|.++...|++++|+..
T Consensus 76 --------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 147 (330)
T 3hym_B 76 --------FYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAA 147 (330)
T ss_dssp --------HHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred --------HHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc
Q 002100 735 AEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN 814 (967)
Q Consensus 735 ~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 814 (967)
++++++..|+.. .++..+|.++...|++++|+.+|+++++
T Consensus 148 ~~~a~~~~~~~~----------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 148 YFTAAQLMKGCH----------------------------------------LPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHTTTCS----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhccccH----------------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999988544 6788899999999999999999999999
Q ss_pred cC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 002100 815 IK--HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVL 892 (967)
Q Consensus 815 ~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~ 892 (967)
.. ...++..+|.++...|++++|+..++++++..|.... ....|..+.++..+|.++
T Consensus 188 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------------~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 188 IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN---------------------EVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC---------------------SCTTTTCCHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc---------------------cccccHHHHHHHHHHHHH
Confidence 54 4568999999999999999999999999987764110 011256788999999999
Q ss_pred HhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 002100 893 MDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATE 960 (967)
Q Consensus 893 ~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~ 960 (967)
...|++++|+..|+++++..|+ ..++..+|.++..+|++++|+..|+++++++|+++.++..+.++-+
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 9999999999999999999998 5699999999999999999999999999999999999998888664
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=4.5e-24 Score=250.47 Aligned_cols=379 Identities=12% Similarity=-0.015 Sum_probs=321.9
Q ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCc
Q 002100 474 KDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLS 553 (967)
Q Consensus 474 ~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~ 553 (967)
..++..++++.+.++..+...++.++..- . +.-.+.++|+..|+++++. +++
T Consensus 24 ~~~~~~~~~~a~~g~~~a~~~lg~~y~~g-~-------------------------~~~~~~~~A~~~~~~a~~~--~~~ 75 (490)
T 2xm6_A 24 NVNLEQLKQKAESGEAKAQLELGYRYFQG-N-------------------------ETTKDLTQAMDWFRRAAEQ--GYT 75 (490)
T ss_dssp -CCHHHHHHHHHTTCHHHHHHHHHHHHHT-S-------------------------SSCCCHHHHHHHHHHHHHT--TCH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHcC-C-------------------------CCCcCHHHHHHHHHHHHHC--CCH
Confidence 44577788888888888888877766430 0 0011448888888888875 678
Q ss_pred hhHHHHHHHHHh----cCcHHHHHHHHHHHhccCCChhHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCchHHhhh
Q 002100 554 YPYKYRAILLVE----ENKLAAAITEINRIIGFKVSPDCLELRAWISIA----LEDYDGALRDVRALLTLDPSYMMFYGQ 625 (967)
Q Consensus 554 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~ 625 (967)
.+++.+|.+|.. .+++++|+..|+++.+.. ++.+++.+|.+|.. .+++++|+..|+++.+. +++.++
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~-- 150 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQ-- 150 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH--
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH--
Confidence 899999999999 999999999999998643 78899999999999 89999999999999876 456666
Q ss_pred hhhhhhHhhhHHH----hhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH----hcCHHHH
Q 002100 626 LHGDNLVETLQPL----VQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLR----LNSQKAA 697 (967)
Q Consensus 626 ~~~~~~~~~l~~~----~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~----~g~~~~A 697 (967)
+.++.++.. .+++++| +..|+++++. .++..++.+|.+|.. .+++++|
T Consensus 151 ----~~Lg~~y~~g~g~~~d~~~A------------------~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A 206 (490)
T 2xm6_A 151 ----QSMGDAYFEGDGVTRDYVMA------------------REWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAIS 206 (490)
T ss_dssp ----HHHHHHHHHTSSSCCCHHHH------------------HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred ----HHHHHHHHcCCCCCCCHHHH------------------HHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHH
Confidence 677888876 6677777 8999999886 578999999999998 8999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHH
Q 002100 698 MRSLRLARNYSTSEHEKLVYEGWILYD----TGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLE 773 (967)
Q Consensus 698 ~~~l~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le 773 (967)
+..|+++.+.. ++.+++.+|.++.. .+++++|+.+|+++++..+ .
T Consensus 207 ~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~--------------------------- 255 (490)
T 2xm6_A 207 AQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN--S--------------------------- 255 (490)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC--H---------------------------
T ss_pred HHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--H---------------------------
Confidence 99999999864 57899999999997 8999999999999986533 2
Q ss_pred HHhcCCCCCCchHHHHHHhHHHHHh----cccHHHHHHHHHHHhccCcHHHHHHHHHHHHHh-----CCHHHHHHHHHHH
Q 002100 774 EALRCPSDGLRKGQALNNLGSVYVD----CEKLDLAADCYMNALNIKHTRAHQGLARVYHLK-----NQRKAAYDEMTKL 844 (967)
Q Consensus 774 ~~~~~~~~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~-----g~~~~A~~~~~~a 844 (967)
.+++++|.+|.. .+++++|+.+|+++++.++..++..+|.+|... +++++|+.+|+++
T Consensus 256 -------------~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 256 -------------IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp -------------HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 578899999998 899999999999999999999999999999998 9999999999999
Q ss_pred HHHccCCHHHHHHHHcc----C---ChHHHHHHHHHhhccCCCCchHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCC
Q 002100 845 IEKARNNASAYEKRSEY----C---DRDMAKSDLSMATQLDPMRTYPYRYRAAVLMD----DHKEAEAIAELSRAIAFKP 913 (967)
Q Consensus 845 l~~~p~~~~~~~~~~~~----~---~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~----~g~~~eAi~~~~kal~~~p 913 (967)
++. .++.+++.+|.. + ++++|+..|+++++. .++.+++++|.+|.. .+++++|+.+|+++++..
T Consensus 323 ~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~- 397 (490)
T 2xm6_A 323 AEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG- 397 (490)
T ss_dssp HHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred Hhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence 986 456788888743 3 789999999999987 678999999999999 899999999999999875
Q ss_pred ChHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCC---chhHHHHHHHH
Q 002100 914 DLQLLHLRAAFHDS----MGDHLHTQRDCEAALCLDPN---HTDTLELYDKA 958 (967)
Q Consensus 914 ~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~---~~~~l~l~~r~ 958 (967)
.+.+++.+|.+|.. .+|+++|+.+|++|++.+|+ ++.+...+.++
T Consensus 398 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 398 LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 46799999999999 89999999999999999965 66665554433
No 21
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.94 E-value=2.4e-27 Score=236.14 Aligned_cols=154 Identities=18% Similarity=0.229 Sum_probs=139.8
Q ss_pred ccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcC
Q 002100 239 RDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
++.+...+..+++++.+|||+|+|+|++|+|||.||+++|+||++||.++|.|+...+|.+++ +++++|+.+|+|+||
T Consensus 18 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~--~~~~~f~~~l~~~Yt 95 (172)
T 3htm_A 18 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND--VEPEVFKEMMCFIYT 95 (172)
T ss_dssp CCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECS--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecC--CCHHHHHHHHHHHhC
Confidence 344556667778889999999999999999999999999999999999999999999999977 999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhhcCCch
Q 002100 319 KMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNP 396 (967)
Q Consensus 319 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~l~~~ 396 (967)
|.+ .++.+++.+++.+|++|+++.|++.|+++|.+.++ .+|++.++.+|..|+++.|++.|.+||.+||...+.++
T Consensus 96 ~~~-~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~-~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~ 171 (172)
T 3htm_A 96 GKA-PNLDKMADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKTQAVDFINYHATDVLETS 171 (172)
T ss_dssp SCC-TTGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-------
T ss_pred CCC-CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcCC
Confidence 999 79999999999999999999999999999999999 99999999999999999999999999999998776554
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=3.9e-26 Score=256.65 Aligned_cols=304 Identities=13% Similarity=0.077 Sum_probs=233.3
Q ss_pred HHHhcCHHHHHH-HHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcC
Q 002100 596 SIALEDYDGALR-DVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAND 674 (967)
Q Consensus 596 ~~~~g~~~~A~~-~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~ 674 (967)
+..+|+|++|+. .|++++.+.|+++... ....+.++.++...+++++| +..+.++++.+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~A------------------~~~~~~al~~~ 94 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRD--HPQPFEEGLRRLQEGDLPNA------------------VLLFEAAVQQD 94 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTT--CSSHHHHHHHHHHTTCHHHH------------------HHHHHHHHHSC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccc--hHHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHhC
Confidence 344566777776 7777776666654221 01114566666677777766 67777777777
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 675 PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 675 p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++.+.|+........
T Consensus 95 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-- 172 (368)
T 1fch_A 95 PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA-- 172 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH--
Confidence 777777778888888888888888888888888888888888888888888888888888888888888554100000
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH----HHHHHHHHHHHH
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT----RAHQGLARVYHL 830 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~----~a~~~la~~~~~ 830 (967)
... .........+..++.++ ..|++++|+..|+++++.++. .++..+|.++..
T Consensus 173 --------~~~--------------~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~ 229 (368)
T 1fch_A 173 --------EEG--------------AGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 229 (368)
T ss_dssp -----------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred --------HHH--------------hhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH
Confidence 000 00001113344677777 999999999999999995544 589999999999
Q ss_pred hCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHH
Q 002100 831 KNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELS 906 (967)
Q Consensus 831 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~ 906 (967)
.|++++|+..|+++++..|+++.++..+|.. |++++|+..|+++++++|+++.++..+|.++...|++++|+..|+
T Consensus 230 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 309 (368)
T 1fch_A 230 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 309 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999999999999843 999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCh------------HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 907 RAIAFKPDL------------QLLHLRAAFHDSMGDHLHTQRDCEAALCL 944 (967)
Q Consensus 907 kal~~~p~~------------~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 944 (967)
+++++.|+. .++..+|.++..+|++++|...++++++.
T Consensus 310 ~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 310 EALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 999988865 58999999999999999999999988765
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=2.2e-25 Score=250.44 Aligned_cols=300 Identities=13% Similarity=0.047 Sum_probs=253.4
Q ss_pred HHHHHhhcCChHHHHH-HHHHhHhhCCCC----chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHH
Q 002100 525 MYQERSLYCSGKEKMM-DLNTATELDPTL----SYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIA 598 (967)
Q Consensus 525 ~~~~~~~y~~~~~A~~-~~~~al~l~P~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~ 598 (967)
.+...+.| ++|+. .|++++++.|++ ...++.+|.++...|++++|+..|+++++.+| ++.++..+|.++..
T Consensus 34 ~~~~~~~~---~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 110 (368)
T 1fch_A 34 AHPWLSDY---DDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE 110 (368)
T ss_dssp ---------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHH---HHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444555 88998 999999998877 46689999999999999999999999999999 89999999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh
Q 002100 599 LEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS 678 (967)
Q Consensus 599 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~ 678 (967)
.|++++|+..|+++++++|++..++ ..++.++...+++++| +..+.++++.+|...
T Consensus 111 ~g~~~~A~~~~~~al~~~~~~~~~~------~~l~~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~ 166 (368)
T 1fch_A 111 NEQELLAISALRRCLELKPDNQTAL------MALAVSFTNESLQRQA------------------CEILRDWLRYTPAYA 166 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCHHHH------------------HHHHHHHHHTSTTTG
T ss_pred CcCHHHHHHHHHHHHhcCCCCHHHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCcCcH
Confidence 9999999999999999999998888 7788999999999999 899999999999887
Q ss_pred HHHH----------------HHHHHHHHhcCHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 679 LLRF----------------RQSLLLLRLNSQKAAMRSLRLARNYSTS--EHEKLVYEGWILYDTGHREEALAKAEESIS 740 (967)
Q Consensus 679 ~~~~----------------~~g~~~~~~g~~~~A~~~l~~al~~~p~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 740 (967)
..+. .++.++ ..|++++|+..|+++++.+|+ ++.++..+|.++...|++++|+..|++++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 167 HLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7665 456666 999999999999999999999 889999999999999999999999999999
Q ss_pred cccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC--cH
Q 002100 741 IQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK--HT 818 (967)
Q Consensus 741 ~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~ 818 (967)
++|+.. .+++++|.++...|++++|+.+|+++++.+ ..
T Consensus 246 ~~~~~~----------------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 285 (368)
T 1fch_A 246 VRPNDY----------------------------------------LLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 285 (368)
T ss_dssp HCTTCH----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hCcCCH----------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 988655 789999999999999999999999999844 45
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCH
Q 002100 819 RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKE 898 (967)
Q Consensus 819 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~ 898 (967)
.++..+|.++..+|++++|+..|+++++..|++... --...|....+|..+|.++...|++
T Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 286 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP-------------------RGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-------------------------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc-------------------cccccchhhHHHHHHHHHHHHhCCh
Confidence 689999999999999999999999999998864211 0112455678889999999999999
Q ss_pred HHHHHHHHHHHhc
Q 002100 899 AEAIAELSRAIAF 911 (967)
Q Consensus 899 ~eAi~~~~kal~~ 911 (967)
++|...+.++++.
T Consensus 347 ~~A~~~~~~~l~~ 359 (368)
T 1fch_A 347 DAYGAADARDLST 359 (368)
T ss_dssp GGHHHHHTTCHHH
T ss_pred HhHHHhHHHHHHH
Confidence 9999888877654
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.93 E-value=7.2e-23 Score=242.74 Aligned_cols=412 Identities=11% Similarity=-0.020 Sum_probs=288.9
Q ss_pred hhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchh--HHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHH
Q 002100 450 ATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIY--SLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQ 527 (967)
Q Consensus 450 ~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~--a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~ 527 (967)
...+|....+|..++.. ...|++++|...|+++++..|.. .+..++....+.|+.
T Consensus 6 l~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~---------------------- 62 (530)
T 2ooe_A 6 LEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNY---------------------- 62 (530)
T ss_dssp HHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH----------------------
T ss_pred hhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCH----------------------
Confidence 34567777888888884 77899999999999999998744 445555555555554
Q ss_pred HHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHH-HHHhcCcHHHHHH----HHHHHhc---cCC-ChhHHHHHHHHHHH
Q 002100 528 ERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAI-LLVEENKLAAAIT----EINRIIG---FKV-SPDCLELRAWISIA 598 (967)
Q Consensus 528 ~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~---~~p-~~~~~~~la~~~~~ 598 (967)
++|...|+++++.+| +...|...+. .....|++++|.+ .|++++. .+| +...|...+.+...
T Consensus 63 --------~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~ 133 (530)
T 2ooe_A 63 --------DKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKG 133 (530)
T ss_dssp --------HHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhc
Confidence 555556666666665 3445555543 2233455544443 5555543 233 45555555555444
Q ss_pred ---------hcCHHHHHHHHHHHHHhCCCchH--Hhhhhhhhh--------hHhhhHHHhhchhhHhhHHHHHhhhcccc
Q 002100 599 ---------LEDYDGALRDVRALLTLDPSYMM--FYGQLHGDN--------LVETLQPLVQQWSQADCWMQLYDRWSSVD 659 (967)
Q Consensus 599 ---------~g~~~~A~~~~~~al~l~p~~~~--~~~~~~~~~--------~~~~l~~~~~~~~~A~~~~~l~~~~~~~d 659 (967)
.|++++|...|+++++ .|.+.. .+.... .+ ....+....++|..|. .+|..
T Consensus 134 ~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~-~~e~~~~~~~~~~~l~~~~~~~~~A~---~~~~~----- 203 (530)
T 2ooe_A 134 VEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYN-KYEEGINIHLAKKMIEDRSRDYMNAR---RVAKE----- 203 (530)
T ss_dssp SCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHH-HHHHHHCHHHHHHHHHTTHHHHHHHH---HHHHH-----
T ss_pred CCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHH-HHHHhhchhHHHHHHHHhhHHHHHHH---HHHHH-----
Confidence 5667777777777776 454321 110000 00 0000111223344441 11110
Q ss_pred ccchHHHHHHHHhc-----CCCC-------hHHHHHHHHHHHHh------cC----HHHHHHHHHHHHhcCCchhHHHHH
Q 002100 660 DIGSLAVVHHMLAN-----DPGK-------SLLRFRQSLLLLRL------NS----QKAAMRSLRLARNYSTSEHEKLVY 717 (967)
Q Consensus 660 ~~~al~~~~~~l~~-----~p~~-------~~~~~~~g~~~~~~------g~----~~~A~~~l~~al~~~p~~~~a~~~ 717 (967)
+..+...++. .|.. ...|... +.... ++ ...|+..|++++...|.++++|+.
T Consensus 204 ----~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~--~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~ 277 (530)
T 2ooe_A 204 ----YETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY--IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYE 277 (530)
T ss_dssp ----HHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH--HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----HHHHHHHhccccccCCCCCChhHHHHHHHHHHH--HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 1111123332 2332 1223222 22222 22 247889999999999999999999
Q ss_pred HHHHHHH-------cCChH-------HHHHHHHHHHh-cccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCC
Q 002100 718 EGWILYD-------TGHRE-------EALAKAEESIS-IQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDG 782 (967)
Q Consensus 718 lg~~~~~-------~g~~~-------eA~~~~~~al~-~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~ 782 (967)
+|..+.. .|+++ +|+..|+++++ +.|++.
T Consensus 278 ~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~------------------------------------ 321 (530)
T 2ooe_A 278 AAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM------------------------------------ 321 (530)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH------------------------------------
T ss_pred HHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH------------------------------------
Confidence 9999986 79987 99999999997 788655
Q ss_pred CchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHH
Q 002100 783 LRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH---TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS 859 (967)
Q Consensus 783 ~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 859 (967)
.+|..+|.++...|++++|...|+++++..+ ..+|..++.++...|++++|.+.|+++++..|.....+...+
T Consensus 322 ----~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a 397 (530)
T 2ooe_A 322 ----LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA 397 (530)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 7899999999999999999999999999654 248999999999999999999999999999888777666544
Q ss_pred -----ccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hH----HHHHHHHHHHHcC
Q 002100 860 -----EYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQ----LLHLRAAFHDSMG 929 (967)
Q Consensus 860 -----~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~----~~~~~a~~~~~~g 929 (967)
..|+.++|...|+++++.+|+++.+|..++.++...|++++|...|+++++..|. +. ++.....+....|
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2489999999999999999999999999999999999999999999999998764 22 6777788888999
Q ss_pred ChHHHHHHHHHHHhcCCCch
Q 002100 930 DHLHTQRDCEAALCLDPNHT 949 (967)
Q Consensus 930 ~~~~A~~~~~~al~~~P~~~ 949 (967)
+.+.+...++++++..|++.
T Consensus 478 ~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 478 DLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp CHHHHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHHCchhc
Confidence 99999999999999999643
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.92 E-value=2.6e-24 Score=241.91 Aligned_cols=290 Identities=11% Similarity=0.052 Sum_probs=236.9
Q ss_pred HHHHHHHhHhhCCCCc----hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 538 KMMDLNTATELDPTLS----YPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 538 A~~~~~~al~l~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
+...+.+++...|.++ ..++.+|..+...|++++|+..|++++..+| ++.++..+|.+|...|++++|+..|+++
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 125 (365)
T 4eqf_A 46 TVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRC 125 (365)
T ss_dssp -------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455566666655554 4599999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHH--------
Q 002100 613 LTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQ-------- 684 (967)
Q Consensus 613 l~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~-------- 684 (967)
++++|++..++ ..++.++...+++++| +..+.++++.+|.....+..+
T Consensus 126 l~~~p~~~~~~------~~l~~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 181 (365)
T 4eqf_A 126 LELQPNNLKAL------MALAVSYTNTSHQQDA------------------CEALKNWIKQNPKYKYLVKNKKGSPGLTR 181 (365)
T ss_dssp HHHCTTCHHHH------HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCHHHHCC------------
T ss_pred HhcCCCCHHHH------HHHHHHHHccccHHHH------------------HHHHHHHHHhCccchHHHhhhccchHHHH
Confidence 99999998888 7789999999999999 899999999998876666554
Q ss_pred --HHHHHHhcCHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCC
Q 002100 685 --SLLLLRLNSQKAAMRSLRLARNYSTS--EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSL 760 (967)
Q Consensus 685 --g~~~~~~g~~~~A~~~l~~al~~~p~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~ 760 (967)
|.++...|++++|+..|+++++.+|+ ++.++..+|.++...|++++|+..|+++++++|++.
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------------- 247 (365)
T 4eqf_A 182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY-------------- 247 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--------------
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--------------
Confidence 89999999999999999999999999 899999999999999999999999999999999665
Q ss_pred CCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCHHHHH
Q 002100 761 NPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRKAAY 838 (967)
Q Consensus 761 ~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~ 838 (967)
.+++++|.+|...|++++|+.+|+++++. +...++..+|.++..+|++++|+
T Consensus 248 --------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 248 --------------------------SLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp --------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred --------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 78999999999999999999999999984 44569999999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002100 839 DEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAI 909 (967)
Q Consensus 839 ~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal 909 (967)
..|+++++..|+..... ..........+|..++.++...|+.+.|.....+.+
T Consensus 302 ~~~~~al~~~~~~~~~~------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQ------------------QVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHCC------------------------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHhCcccCCCc------------------ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 99999999998642110 000111246778888888888898888887766543
No 26
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=1.7e-24 Score=243.35 Aligned_cols=251 Identities=13% Similarity=0.110 Sum_probs=225.9
Q ss_pred HhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCchH
Q 002100 544 TATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALED-YDGALRDVRALLTLDPSYMM 621 (967)
Q Consensus 544 ~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~-~~~A~~~~~~al~l~p~~~~ 621 (967)
.++.++|++..+|..+|.++...|++++|+..|++++.++| +..+|+.+|.++..+|+ +++|+..|++++.++|++..
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~ 167 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ 167 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH
Confidence 46788899999999999999999999999999999999999 89999999999999997 99999999999999999999
Q ss_pred HhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHH
Q 002100 622 FYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSL 701 (967)
Q Consensus 622 ~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l 701 (967)
++ +.++.++...+++++| +..|+++++++|++..+|+.+|.++..+|++++|+..|
T Consensus 168 a~------~~~g~~~~~~g~~~eA------------------l~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~ 223 (382)
T 2h6f_A 168 VW------HHRRVLVEWLRDPSQE------------------LEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV 223 (382)
T ss_dssp HH------HHHHHHHHHHTCCTTH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred HH------HHHHHHHHHccCHHHH------------------HHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 99 8889999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHHHH-cCChHHH-----HHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHH
Q 002100 702 RLARNYSTSEHEKLVYEGWILYD-TGHREEA-----LAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEA 775 (967)
Q Consensus 702 ~~al~~~p~~~~a~~~lg~~~~~-~g~~~eA-----~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~ 775 (967)
+++++++|++..+|+++|.++.. .|..++| +..|++++.++|++.
T Consensus 224 ~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~----------------------------- 274 (382)
T 2h6f_A 224 DQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNE----------------------------- 274 (382)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCH-----------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCH-----------------------------
Confidence 99999999999999999999999 5665888 599999999999777
Q ss_pred hcCCCCCCchHHHHHHhHHHHHhcc--cHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhC---------CHHHHHHHHH
Q 002100 776 LRCPSDGLRKGQALNNLGSVYVDCE--KLDLAADCYMNALN--IKHTRAHQGLARVYHLKN---------QRKAAYDEMT 842 (967)
Q Consensus 776 ~~~~~~~~~~~~a~~~lg~~~~~~g--~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g---------~~~~A~~~~~ 842 (967)
.+|+++|.++...| ++++|++.++++ + ++...++..+|.+|..+| .+++|++.|+
T Consensus 275 -----------~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~ 342 (382)
T 2h6f_A 275 -----------SAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCE 342 (382)
T ss_dssp -----------HHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 79999999999988 799999999988 6 445568999999999875 2466777776
Q ss_pred HH-HHHccCCHHHHHHHH
Q 002100 843 KL-IEKARNNASAYEKRS 859 (967)
Q Consensus 843 ~a-l~~~p~~~~~~~~~~ 859 (967)
++ ++.+|.....|..++
T Consensus 343 ~l~~~~DP~r~~~w~~~~ 360 (382)
T 2h6f_A 343 ILAKEKDTIRKEYWRYIG 360 (382)
T ss_dssp HHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhCchhHHHHHHHH
Confidence 66 666666555555554
No 27
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.92 E-value=1.5e-25 Score=245.69 Aligned_cols=154 Identities=18% Similarity=0.229 Sum_probs=135.1
Q ss_pred ccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcC
Q 002100 239 RDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
++++...+.++++++.+|||+|+|+|++|+|||.|||++||||++||.++|.|+...+|+|++ +++++|+.+|+||||
T Consensus 158 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~--~~~~~f~~~L~~iYt 235 (312)
T 3hqi_A 158 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND--VEPEVFKEMMCFIYT 235 (312)
T ss_dssp CCCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECS--SCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecC--CCHHHHHHHHHhhcC
Confidence 445556677788889999999999999999999999999999999999999999999999987 999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhhcCCch
Q 002100 319 KMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNP 396 (967)
Q Consensus 319 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~l~~~ 396 (967)
|.+ .++.+++.+|+.+|++|++++|+..|+++|.+.++ .+|++.++.+|..|++..|++.|++||.+|+...+.++
T Consensus 236 ~~~-~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~-~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~ 311 (312)
T 3hqi_A 236 GKA-PNLDKMADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKTQAVDFINYHATDVLETS 311 (312)
T ss_dssp SCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-------
T ss_pred CCC-CChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCC
Confidence 999 78889999999999999999999999999999998 99999999999999999999999999999998766543
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.92 E-value=3e-24 Score=241.39 Aligned_cols=283 Identities=12% Similarity=0.054 Sum_probs=171.7
Q ss_pred HHHHHHhccCC-C----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhH
Q 002100 574 TEINRIIGFKV-S----PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCW 648 (967)
Q Consensus 574 ~~~~~al~~~p-~----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~ 648 (967)
..+.+++...+ + ...++.+|..+...|++++|+..|+++++.+|++..++ ..++.++...+++++|
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~lg~~~~~~g~~~~A--- 118 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAW------QFLGITQAENENEQAA--- 118 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCHHHH---
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHH------HHHHHHHHHCCCHHHH---
Confidence 44444444444 2 34577777777777777777777777777777666555 4445555555555555
Q ss_pred HHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCCh
Q 002100 649 MQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHR 728 (967)
Q Consensus 649 ~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~ 728 (967)
+..+.++++.+|.++.++..+|.+|...|++++|+..|+++++..|++...+..++
T Consensus 119 ---------------~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~--------- 174 (365)
T 4eqf_A 119 ---------------IVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK--------- 174 (365)
T ss_dssp ---------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--------------
T ss_pred ---------------HHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc---------
Confidence 55555555555555555555555555555555555555555555544444333320
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHH
Q 002100 729 EEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADC 808 (967)
Q Consensus 729 ~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~ 808 (967)
. ....+..+|.++...|++++|+.+
T Consensus 175 -------------------------~------------------------------~~~~~~~l~~~~~~~g~~~~A~~~ 199 (365)
T 4eqf_A 175 -------------------------G------------------------------SPGLTRRMSKSPVDSSVLEGVKEL 199 (365)
T ss_dssp ---------------------------------------------------------------------CCHHHHHHHHH
T ss_pred -------------------------c------------------------------chHHHHHHHHHHhhhhhHHHHHHH
Confidence 0 002344455555556666666666
Q ss_pred HHHHhccC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCC
Q 002100 809 YMNALNIK----HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPM 880 (967)
Q Consensus 809 ~~~Al~~~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~ 880 (967)
|+++++.+ ...++..+|.++..+|++++|+..|+++++..|+++.++..+|. .|++++|+..|+++++++|+
T Consensus 200 ~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 279 (365)
T 4eqf_A 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279 (365)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 66655532 23355566666666666666666666666666666666666653 26666666666666777778
Q ss_pred CchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-------------hHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 881 RTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-------------LQLLHLRAAFHDSMGDHLHTQRDCEAALCL 944 (967)
Q Consensus 881 ~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 944 (967)
++.++.++|.+|...|++++|+..|++++++.|+ ..++..++.++..+|+.+.|....++.++.
T Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~ 356 (365)
T 4eqf_A 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDV 356 (365)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGG
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHH
Confidence 8888999999999999999999999999998876 347889999999999999998887775544
No 29
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=5.1e-24 Score=239.44 Aligned_cols=251 Identities=14% Similarity=0.040 Sum_probs=229.9
Q ss_pred HHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcccchHHH
Q 002100 670 MLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGH-REEALAKAEESISIQRSFEAF 748 (967)
Q Consensus 670 ~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~-~~eA~~~~~~al~~~p~~~~~ 748 (967)
++..+|.+..++..+|.++...|++++|+..|+++++++|++..+|+++|.++..+|+ +++|+..|+++++++|++.
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~-- 166 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY-- 166 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH--
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH--
Confidence 4677888999999999999999999999999999999999999999999999999997 9999999999999999777
Q ss_pred HHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc--HHHHHHHHH
Q 002100 749 FLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH--TRAHQGLAR 826 (967)
Q Consensus 749 ~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--~~a~~~la~ 826 (967)
.+|+++|.++..+|++++|+.+|++++++++ ..+|.++|.
T Consensus 167 --------------------------------------~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~ 208 (382)
T 2h6f_A 167 --------------------------------------QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208 (382)
T ss_dssp --------------------------------------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred --------------------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHH
Confidence 8999999999999999999999999999554 559999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc-----CChHHH-----HHHHHHhhccCCCCchHHHHHHHHHHhCC
Q 002100 827 VYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY-----CDRDMA-----KSDLSMATQLDPMRTYPYRYRAAVLMDDH 896 (967)
Q Consensus 827 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-----~~~~~A-----~~~l~~al~l~p~~~~~~~~la~~~~~~g 896 (967)
++..+|++++|+..|+++|+.+|++..+|..+|.. +..++| +..|+++++++|++..+|.++|.++...|
T Consensus 209 ~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG 288 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999942 444777 58999999999999999999999999988
Q ss_pred --CHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcC--------C-hHHHHHHHHHH-HhcCCCchhHHHHHHHHHhh
Q 002100 897 --KEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMG--------D-HLHTQRDCEAA-LCLDPNHTDTLELYDKATER 961 (967)
Q Consensus 897 --~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g--------~-~~~A~~~~~~a-l~~~P~~~~~l~l~~r~~~~ 961 (967)
++++|++.+.++ +.+|+ ..++..+|.+|..+| + +++|+..|+++ ++++|.....+..+.+....
T Consensus 289 ~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 289 LSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp GGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 699999999998 88888 458999999999985 3 59999999999 99999999988766665543
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.91 E-value=3.8e-23 Score=227.55 Aligned_cols=267 Identities=16% Similarity=0.169 Sum_probs=235.2
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALED 601 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~ 601 (967)
|..+...+.| ++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+| +..++..+|.++...|+
T Consensus 28 a~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 28 GLSMLKLANL---AEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC
Confidence 4445555544 9999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCchHHhhhhhhh-------hhH-hh-hHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHh
Q 002100 602 YDGALRDVRALLTLDPSYMMFYGQLHGD-------NLV-ET-LQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLA 672 (967)
Q Consensus 602 ~~~A~~~~~~al~l~p~~~~~~~~~~~~-------~~~-~~-l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~ 672 (967)
+++|+..++++++.+|++...+...... ..+ +. ++...+++++| +..+.++++
T Consensus 105 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A------------------~~~~~~~~~ 166 (327)
T 3cv0_A 105 ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYREC------------------RTLLHAALE 166 (327)
T ss_dssp HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHH------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHH------------------HHHHHHHHh
Confidence 9999999999999999988776211000 000 33 56677788888 999999999
Q ss_pred cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Q 002100 673 NDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKA 752 (967)
Q Consensus 673 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 752 (967)
.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|+..
T Consensus 167 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------ 240 (327)
T 3cv0_A 167 MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV------ 240 (327)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------
T ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998655
Q ss_pred HHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--C------------cH
Q 002100 753 YALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI--K------------HT 818 (967)
Q Consensus 753 ~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~------------~~ 818 (967)
.++..+|.++...|++++|+.+|+++++. + ..
T Consensus 241 ----------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 286 (327)
T 3cv0_A 241 ----------------------------------RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATR 286 (327)
T ss_dssp ----------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHH
T ss_pred ----------------------------------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCH
Confidence 68899999999999999999999999984 3 34
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002100 819 RAHQGLARVYHLKNQRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 819 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 850 (967)
.++..+|.++..+|++++|...++++++..|+
T Consensus 287 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 287 SMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 58999999999999999999999988887663
No 31
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.91 E-value=1.1e-25 Score=217.27 Aligned_cols=137 Identities=20% Similarity=0.253 Sum_probs=102.9
Q ss_pred ccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcC
Q 002100 239 RDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
++++...+.++++++.+|||+|+|+|++|+|||.||+++|+||++||.++|.|+...+|++++ +++++|+.+|+|+||
T Consensus 9 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~--~~~~~~~~~l~~~Y~ 86 (145)
T 4eoz_A 9 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND--VEPEVFKEMMCFIYT 86 (145)
T ss_dssp CCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECS--SCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecC--CCHHHHHHHHHhhcc
Confidence 344556667778889999999999999999999999999999999999999999899999987 999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHH
Q 002100 319 KMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVA 379 (967)
Q Consensus 319 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~ 379 (967)
|++ .++.+++.+++.+|++|+++.|++.|+++|.+.++ .+||+.++.+|..|++++|++
T Consensus 87 ~~~-~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~-~~n~~~~l~~A~~~~~~~Lk~ 145 (145)
T 4eoz_A 87 GKA-PNLDKMADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKT 145 (145)
T ss_dssp SCC-TTGGGTHHHHHHHHHHTTCHHHHHHHHCC----------------------------
T ss_pred Ccc-CCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCHHHhcC
Confidence 999 79999999999999999999999999999999999 999999999999999999874
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=3.6e-21 Score=228.14 Aligned_cols=362 Identities=9% Similarity=-0.015 Sum_probs=273.6
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHH-HHHHhcCHHHHHH----H
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAW-ISIALEDYDGALR----D 608 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~-~~~~~g~~~~A~~----~ 608 (967)
+.++|...|+++++.+|++...|..++..+...|++++|+..|++++...|+.+.+..++. +....|++++|.+ .
T Consensus 27 ~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~ 106 (530)
T 2ooe_A 27 PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQA 106 (530)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 4489999999999999999999999999999999999999999999999998778888775 4456788887765 7
Q ss_pred HHHHHHh---CCCchHHhhhhhhhhhHhhhHH---------HhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCC
Q 002100 609 VRALLTL---DPSYMMFYGQLHGDNLVETLQP---------LVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPG 676 (967)
Q Consensus 609 ~~~al~l---~p~~~~~~~~~~~~~~~~~l~~---------~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~ 676 (967)
|++++.. +|+....|. ....+.. ..++++.| ...|+++++ .|.
T Consensus 107 ~~~al~~~g~~~~~~~~w~------~~~~~~~~~~~~~~~~~~~~~~~a------------------~~~y~~al~-~P~ 161 (530)
T 2ooe_A 107 YDFALDKIGMEIMSYQIWV------DYINFLKGVEAVGSYAENQRITAV------------------RRVYQRGCV-NPM 161 (530)
T ss_dssp HHHHHHHTTTSTTCHHHHH------HHHHHHHHSCCCSSTTHHHHHHHH------------------HHHHHHHTT-SCC
T ss_pred HHHHHHHCCCCcccHHHHH------HHHHHHhcCCCcccHHHHhHHHHH------------------HHHHHHHHh-chh
Confidence 7777764 455555552 1122222 14566666 888999998 565
Q ss_pred ChH--HHHHHHHH-------------HHHhcCHHHHHHHHHH------HHhc-----CCch-------hHHHHHHHHHHH
Q 002100 677 KSL--LRFRQSLL-------------LLRLNSQKAAMRSLRL------ARNY-----STSE-------HEKLVYEGWILY 723 (967)
Q Consensus 677 ~~~--~~~~~g~~-------------~~~~g~~~~A~~~l~~------al~~-----~p~~-------~~a~~~lg~~~~ 723 (967)
... .+...... ....+++..|...++. .++. .|.. ...|... +.+
T Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~--~~~ 239 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY--IQW 239 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH--HHH
T ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH--HHH
Confidence 432 22211111 1134567777766654 3332 2321 1223222 222
Q ss_pred Hc------CCh----HHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhH
Q 002100 724 DT------GHR----EEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLG 793 (967)
Q Consensus 724 ~~------g~~----~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg 793 (967)
.. ++. ++++..|++++..+|.+. .+|..+|
T Consensus 240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~----------------------------------------~~w~~~~ 279 (530)
T 2ooe_A 240 EKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP----------------------------------------DIWYEAA 279 (530)
T ss_dssp HHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCH----------------------------------------HHHHHHH
T ss_pred HHcCCccCCcchhHHHHHHHHHHHHHHhCCCCH----------------------------------------HHHHHHH
Confidence 22 222 366777888887777555 7889999
Q ss_pred HHHHh-------cccHH-------HHHHHHHHHhc---cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCH-HHH
Q 002100 794 SVYVD-------CEKLD-------LAADCYMNALN---IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNA-SAY 855 (967)
Q Consensus 794 ~~~~~-------~g~~~-------~A~~~~~~Al~---~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~ 855 (967)
..+.. .|+++ +|+..|++|++ ++...+|..+|.++...|++++|...|+++++..|.++ .+|
T Consensus 280 ~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 359 (530)
T 2ooe_A 280 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVY 359 (530)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHH
T ss_pred HHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHH
Confidence 88875 78887 99999999996 44556999999999999999999999999999999885 588
Q ss_pred HHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHH-HHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcC
Q 002100 856 EKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAV-LMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMG 929 (967)
Q Consensus 856 ~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~-~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g 929 (967)
...+.. ++.++|...|++|++..|.....+...+.+ +...|++++|...|+++++..|+ +.++..++.++...|
T Consensus 360 ~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g 439 (530)
T 2ooe_A 360 IQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN 439 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC
Confidence 888753 889999999999999999888777777765 34689999999999999999998 568999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCchh----HHHHHHHHHhhh
Q 002100 930 DHLHTQRDCEAALCLDPNHTD----TLELYDKATERV 962 (967)
Q Consensus 930 ~~~~A~~~~~~al~~~P~~~~----~l~l~~r~~~~~ 962 (967)
+.++|...|++++...|.+++ ++..+.+.+...
T Consensus 440 ~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 440 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp CHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred CHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999887765 666555555443
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.91 E-value=7.3e-23 Score=225.27 Aligned_cols=279 Identities=14% Similarity=0.066 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchh--HHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhc
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIY--SLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLY 532 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~--a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y 532 (967)
.....++.+|..++..|++++|+..|+++++.+|.. ++..++. ++...+.+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~---------------------------~~~~~~~~ 71 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGL---------------------------TQAENEKD 71 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH---------------------------HHHHTTCH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH---------------------------HHHHcCCH
Confidence 345568899999999999999999999999997743 3444444 44444444
Q ss_pred CChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHH--------------HH-HH
Q 002100 533 CSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELR--------------AW-IS 596 (967)
Q Consensus 533 ~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~l--------------a~-~~ 596 (967)
++|+..++++++++|++..++..+|.++...|++++|+..|++++..+| +...+..+ +. ++
T Consensus 72 ---~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (327)
T 3cv0_A 72 ---GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFF 148 (327)
T ss_dssp ---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCT
T ss_pred ---HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHH
Confidence 8999999999999999999999999999999999999999999999999 66666665 66 68
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCC
Q 002100 597 IALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPG 676 (967)
Q Consensus 597 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~ 676 (967)
...|++++|+..++++++.+|++...+ ..++.++...+++++| +..+.++++.+|.
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~la~~~~~~~~~~~A------------------~~~~~~~~~~~~~ 204 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMNPNDAQLH------ASLGVLYNLSNNYDSA------------------AANLRRAVELRPD 204 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHSTTCHHHH------HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTT
T ss_pred HHcccHHHHHHHHHHHHhhCCCCHHHH------HHHHHHHHHhccHHHH------------------HHHHHHHHHhCCC
Confidence 899999999999999999999998888 7789999999999999 9999999999999
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhh
Q 002100 677 KSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALA 756 (967)
Q Consensus 677 ~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la 756 (967)
++..+..+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+..+++++.+.|+...
T Consensus 205 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--------- 275 (327)
T 3cv0_A 205 DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTT--------- 275 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC---------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999885210
Q ss_pred hcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc
Q 002100 757 DSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI 815 (967)
Q Consensus 757 ~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~ 815 (967)
. .. .........++..+|.++...|++++|...++++++.
T Consensus 276 ----~-~~--------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 276 ----P-TG--------------EASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp ------------------------CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred ----c-cc--------------cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 0 00 0000013378999999999999999999999887763
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.91 E-value=3.6e-23 Score=221.78 Aligned_cols=248 Identities=15% Similarity=0.128 Sum_probs=220.9
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhh
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALAD 757 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~ 757 (967)
+..++..|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++ .|.+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~----------- 70 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNAT----------- 70 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTT-----------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCch-----------
Confidence 456788999999999999999999999999999999999999999999999999999999998 33221
Q ss_pred cCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCHH
Q 002100 758 SSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRK 835 (967)
Q Consensus 758 ~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~ 835 (967)
.....++..+|.++...|++++|+.+|+++++. +...++..+|.++..+|+++
T Consensus 71 -------------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 125 (272)
T 3u4t_A 71 -------------------------KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFP 125 (272)
T ss_dssp -------------------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH
T ss_pred -------------------------hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHH
Confidence 123467999999999999999999999999994 44569999999999999999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHH-cc---CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCC---HHHHHHHHHHH
Q 002100 836 AAYDEMTKLIEKARNNASAYEKRS-EY---CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHK---EAEAIAELSRA 908 (967)
Q Consensus 836 ~A~~~~~~al~~~p~~~~~~~~~~-~~---~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~---~~eAi~~~~ka 908 (967)
+|+..|+++++.+|++..++..+| .. +++++|+..|+++++++|++..++..+|.++...++ +++|+..|+++
T Consensus 126 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 999999999999999999999999 43 899999999999999999999999999999999998 99999999999
Q ss_pred HhcC---CCh------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 909 IAFK---PDL------QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 909 l~~~---p~~------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
++.. |++ .++..+|.+|..+|++++|+..|+++++++|+++.+.+.+.++....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 9876 542 47888999999999999999999999999999999999888877654
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.90 E-value=2.1e-22 Score=233.18 Aligned_cols=381 Identities=13% Similarity=0.055 Sum_probs=279.9
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHH
Q 002100 461 HQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMM 540 (967)
Q Consensus 461 ~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~ 540 (967)
..+|..+++.|++++|+.+|+++.+.++..+...++.++ ...+.+.+.++|+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y---------------------------~~~g~~~d~~~A~~ 59 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQ---------------------------VGTRDPAQIKQAEA 59 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------------------HccCCCCCHHHHHH
Confidence 457889999999999999999999887766666655544 33333334588899
Q ss_pred HHHHhHhhCCCCchhHHHHHHHHHhcC-----cHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 541 DLNTATELDPTLSYPYKYRAILLVEEN-----KLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 541 ~~~~al~l~P~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 615 (967)
.|+++++. ++.+++.+|.++...+ ++++|+..|+++++.. ++.+++.+|.+|...+..+++...++.....
T Consensus 60 ~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a 135 (452)
T 3e4b_A 60 TYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG-EGNTLIPLAMLYLQYPHSFPNVNAQQQISQW 135 (452)
T ss_dssp --------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT-CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHH
T ss_pred HHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 99999866 7788999999777766 8899999999998844 4558999999999888766554444333332
Q ss_pred -CCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhc--
Q 002100 616 -DPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLN-- 692 (967)
Q Consensus 616 -~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g-- 692 (967)
.+.++.+. +.++.++...+.++++. ..+...+..+...+|. +++.+|.+|...|
T Consensus 136 ~~~g~~~a~------~~Lg~~y~~~~~~~~~~--------------~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~ 192 (452)
T 3e4b_A 136 QAAGYPEAG------LAQVLLYRTQGTYDQHL--------------DDVERICKAALNTTDI---CYVELATVYQKKQQP 192 (452)
T ss_dssp HHHTCTTHH------HHHHHHHHHHTCGGGGH--------------HHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCH
T ss_pred HHCCCHHHH------HHHHHHHHcCCCcccCH--------------HHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCc
Confidence 23344555 67788898888887772 1123444555554444 8999999999999
Q ss_pred -CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHc----CChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHH
Q 002100 693 -SQKAAMRSLRLARNYSTSEHEKLVYEGWILYDT----GHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAY 767 (967)
Q Consensus 693 -~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~----g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~ 767 (967)
++++|+..|+++.+..|.....++.+|.+|... +++++|+.+|+++. |.+.
T Consensus 193 ~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~--------------------- 248 (452)
T 3e4b_A 193 EQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYP--------------------- 248 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST---------------------
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH---------------------
Confidence 999999999999999999998889999999765 79999999999988 5444
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHhHHH-H--HhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC-----CHHHHHH
Q 002100 768 VIQLLEEALRCPSDGLRKGQALNNLGSV-Y--VDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKN-----QRKAAYD 839 (967)
Q Consensus 768 a~~~le~~~~~~~~~~~~~~a~~~lg~~-~--~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g-----~~~~A~~ 839 (967)
.+++++|.+ + ...+++++|+.+|+++.+.++..++++||.+|. .| ++++|+.
T Consensus 249 -------------------~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 249 -------------------ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp -------------------HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred -------------------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 789999998 4 578999999999999999999999999999998 66 9999999
Q ss_pred HHHHHHHHccCCHHHHHHHHcc--------CChHHHHHHHHHhhccCCCCchHHHHHHHHHHh----CCCHHHHHHHHHH
Q 002100 840 EMTKLIEKARNNASAYEKRSEY--------CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMD----DHKEAEAIAELSR 907 (967)
Q Consensus 840 ~~~~al~~~p~~~~~~~~~~~~--------~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~----~g~~~eAi~~~~k 907 (967)
+|+++. +.++.+++.+|.. .++++|+..|+++.+ +.++.+.+++|.+|.. ..++.+|+.+|++
T Consensus 309 ~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 309 HFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 999999 8899999999842 389999999999987 4568899999999885 4689999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHc--CChHHHHHHHHHHHhcC
Q 002100 908 AIAFKPDLQLLHLRAAFHDSM--GDHLHTQRDCEAALCLD 945 (967)
Q Consensus 908 al~~~p~~~~~~~~a~~~~~~--g~~~~A~~~~~~al~~~ 945 (967)
+.+..+. .+...++.+...+ ++..+|....++.....
T Consensus 384 A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 384 AKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 9987653 3455555554433 35667777766655543
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.90 E-value=2.3e-22 Score=208.52 Aligned_cols=199 Identities=19% Similarity=0.135 Sum_probs=176.8
Q ss_pred CCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhh
Q 002100 550 PTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHG 628 (967)
Q Consensus 550 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~ 628 (967)
|+++.+++.+|.++...|++++|+..|+++++.+| ++.++..+|.++..+|++++|+..|+++++++|++..++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~----- 76 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGY----- 76 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH-----
Confidence 78899999999999999999999999999999999 999999999999999999999999999999999999998
Q ss_pred hhhHhhhHHHh-----------hchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHH
Q 002100 629 DNLVETLQPLV-----------QQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAA 697 (967)
Q Consensus 629 ~~~~~~l~~~~-----------~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A 697 (967)
..++.++... +++++| +..+.++++.+|+++.+++.+|.++..+|++++|
T Consensus 77 -~~lg~~~~~~~~~~~~~~~~~g~~~~A------------------~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 77 -MVLSEAYVALYRQAEDRERGKGYLEQA------------------LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp -HHHHHHHHHHHHTCSSHHHHHHHHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred -HHHHHHHHHhhhhhhhhcccccCHHHH------------------HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHH
Confidence 7889999999 999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhc
Q 002100 698 MRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALR 777 (967)
Q Consensus 698 ~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~ 777 (967)
+..|+++++.+ +++.++..+|.++...|++++|+..|+++++++|++.
T Consensus 138 ~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~------------------------------- 185 (217)
T 2pl2_A 138 EASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL------------------------------- 185 (217)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH-------------------------------
T ss_pred HHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-------------------------------
Confidence 99999999999 9999999999999999999999999999999999776
Q ss_pred CCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHh
Q 002100 778 CPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNAL 813 (967)
Q Consensus 778 ~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 813 (967)
.++.++|.++...|++++|+..|+++-
T Consensus 186 ---------~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 186 ---------DLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp ---------HHHHHHHHHHTC---------------
T ss_pred ---------HHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 789999999999999999999998764
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=2.9e-22 Score=214.72 Aligned_cols=248 Identities=14% Similarity=0.063 Sum_probs=208.8
Q ss_pred CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhh
Q 002100 552 LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDN 630 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 630 (967)
++..++.+|.+++..|++++|+..|+++++.+| ++.++..+|.++...|++++|+..++++++ .|+++.... .+..
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~--~~~~ 78 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKS--ADFE 78 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCH--HHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHH--HHHH
Confidence 345678889999999999999999999999999 788899999999999999999999999998 454444310 0116
Q ss_pred hHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 002100 631 LVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS 710 (967)
Q Consensus 631 ~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~ 710 (967)
.++.++...+++++| +..+.++++.+|.++.++..+|.++...|++++|+..|+++++.+|.
T Consensus 79 ~lg~~~~~~~~~~~A------------------~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 140 (272)
T 3u4t_A 79 YYGKILMKKGQDSLA------------------IQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT 140 (272)
T ss_dssp HHHHHHHHTTCHHHH------------------HHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC
T ss_pred HHHHHHHHcccHHHH------------------HHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC
Confidence 778888888888888 88899999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHH
Q 002100 711 EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALN 790 (967)
Q Consensus 711 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~ 790 (967)
++.++..+|...+..+++++|+..|+++++++|++. .++.
T Consensus 141 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~----------------------------------------~~~~ 180 (272)
T 3u4t_A 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY----------------------------------------IGYL 180 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----------------------------------------HHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccch----------------------------------------HHHH
Confidence 999999999555556799999999999999988655 6888
Q ss_pred HhHHHHHhccc---HHHHHHHHHHHhccC---cH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHH
Q 002100 791 NLGSVYVDCEK---LDLAADCYMNALNIK---HT-------RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEK 857 (967)
Q Consensus 791 ~lg~~~~~~g~---~~~A~~~~~~Al~~~---~~-------~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 857 (967)
.+|.++...++ +++|+..|+++++.. +. .++..+|.+|...|++++|++.|+++++.+|+++.++..
T Consensus 181 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 260 (272)
T 3u4t_A 181 WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDG 260 (272)
T ss_dssp HHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHH
Confidence 88999998888 888999999998732 22 478889999999999999999999999999999988877
Q ss_pred HHc
Q 002100 858 RSE 860 (967)
Q Consensus 858 ~~~ 860 (967)
++.
T Consensus 261 l~~ 263 (272)
T 3u4t_A 261 LKM 263 (272)
T ss_dssp HC-
T ss_pred hhh
Confidence 764
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.4e-22 Score=212.89 Aligned_cols=242 Identities=17% Similarity=0.155 Sum_probs=220.8
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhh
Q 002100 677 KSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALA 756 (967)
Q Consensus 677 ~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la 756 (967)
.+..+..+|.++...|++++|+..|+++++.+ .++.++..+|.++...|++++|+..++++++++|+..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------- 72 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR---------- 72 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc----------
Confidence 35678899999999999999999999999999 8899999999999999999999999999999888431
Q ss_pred hcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHH
Q 002100 757 DSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKA 836 (967)
Q Consensus 757 ~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~ 836 (967)
.+.+....++..+|.++...|++++|+.+|+++++..+. +.++...|++++
T Consensus 73 -----------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~~~~~ 123 (258)
T 3uq3_A 73 -----------------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT------ADILTKLRNAEK 123 (258)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------HHHHHHHHHHHH
T ss_pred -----------------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch------hHHHHHHhHHHH
Confidence 000112478999999999999999999999999996654 567888899999
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 002100 837 AYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFK 912 (967)
Q Consensus 837 A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~ 912 (967)
|+..+++++..+|+++.++..+|.. +++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++..
T Consensus 124 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999953 999999999999999999999999999999999999999999999999999
Q ss_pred CC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCchhHHHHHHHH
Q 002100 913 PD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLD------PNHTDTLELYDKA 958 (967)
Q Consensus 913 p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------P~~~~~l~l~~r~ 958 (967)
|+ ..++..+|.++..+|++++|+..|+++++++ |++.++...+.++
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 99 5689999999999999999999999999999 9999998888765
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.89 E-value=2.8e-21 Score=223.72 Aligned_cols=356 Identities=13% Similarity=-0.001 Sum_probs=268.8
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcH---HHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKL---AAAITEINRIIGFKVSPDCLELRAWISIAL 599 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~la~~~~~~ 599 (967)
+..+...+++ ++|+..|+++.+. +++.+++.+|.+|...|++ ++|+..|+++++. ++.+++.+|.++...
T Consensus 10 a~~~~~~g~~---~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDT---VTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHH--TCCTGGGTCC------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCH---HHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhC
Confidence 5566667766 9999999999775 5788999999999999999 9999999999977 788899999977666
Q ss_pred c-----CHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcC
Q 002100 600 E-----DYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAND 674 (967)
Q Consensus 600 g-----~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~ 674 (967)
+ ++++|+..|+++++..+ +.++ +.++.+|...+...++ ..++..+.++.+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~--~~A~------~~Lg~~y~~~~~~~~~---------------~~a~~~~~~a~~~- 138 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGE--GNTL------IPLAMLYLQYPHSFPN---------------VNAQQQISQWQAA- 138 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTC--SSCH------HHHHHHHHHCGGGCTT---------------CCHHHHHHHHHHH-
T ss_pred CCCCCcCHHHHHHHHHHHHHCCC--HHHH------HHHHHHHHhCCCCCCC---------------HHHHHHHHHHHHC-
Confidence 5 89999999999998544 3455 6678888876665554 4456677666543
Q ss_pred CCChHHHHHHHHHHHHhcCHH----HHHHHHHHHHhcCCchhHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcccchHH
Q 002100 675 PGKSLLRFRQSLLLLRLNSQK----AAMRSLRLARNYSTSEHEKLVYEGWILYDTG---HREEALAKAEESISIQRSFEA 747 (967)
Q Consensus 675 p~~~~~~~~~g~~~~~~g~~~----~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g---~~~eA~~~~~~al~~~p~~~~ 747 (967)
.++.+.+.+|.+|...+.++ .|...++.+...+|. +++.+|.+|...| ++++|+..|+++.+..+...
T Consensus 139 -g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a- 213 (452)
T 3e4b_A 139 -GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA- 213 (452)
T ss_dssp -TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH-
T ss_pred -CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH-
Confidence 45778999999999998554 444455555555554 9999999999999 99999999999998888544
Q ss_pred HHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc----ccHHHHHHHHHHHhccCcHHHHHH
Q 002100 748 FFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC----EKLDLAADCYMNALNIKHTRAHQG 823 (967)
Q Consensus 748 ~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~----g~~~~A~~~~~~Al~~~~~~a~~~ 823 (967)
..++++|.+|... +++++|+.+|+++. +++..++++
T Consensus 214 ---------------------------------------~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~ 253 (452)
T 3e4b_A 214 ---------------------------------------QRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVS 253 (452)
T ss_dssp ---------------------------------------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHH
Confidence 6678999999776 79999999999999 888999999
Q ss_pred HHHH-H--HHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc---C-----ChHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 002100 824 LARV-Y--HLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY---C-----DRDMAKSDLSMATQLDPMRTYPYRYRAAVL 892 (967)
Q Consensus 824 la~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~---~-----~~~~A~~~l~~al~l~p~~~~~~~~la~~~ 892 (967)
||.+ + ...+++++|+.+|+++.+. .++.+++.+|.. | ++++|+..|+++. |.++.+++++|.+|
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIY 328 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 9999 4 5789999999999999865 478898888843 4 9999999999999 89999999999999
Q ss_pred Hh----CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 893 MD----DHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDS----MGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 893 ~~----~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
.. ..++++|+.+|+++.+.. .+.+.+.+|.+|.. ..|+++|..+|++|.+.. +++....+..+...+
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g--~~~a~~~l~~l~~~~ 403 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARNG-QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD--TPEANDLATQLEAPL 403 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTTT-CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC--CHHHHHHHHHHHTTC
T ss_pred HCCCCCCcCHHHHHHHHHHHHhhC-hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhC
Confidence 87 459999999999999854 35688899999985 569999999999998864 455666666665443
No 40
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.89 E-value=2.4e-21 Score=210.35 Aligned_cols=260 Identities=12% Similarity=0.023 Sum_probs=224.8
Q ss_pred HHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHH
Q 002100 636 QPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS-LLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEK 714 (967)
Q Consensus 636 ~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~-~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a 714 (967)
....|+|.+| +..+++....+|.+. .....++.+|+.+|+++.|+..++. .+|....+
T Consensus 9 ~~~~g~y~~a------------------i~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a 67 (291)
T 3mkr_A 9 AFYIGSYQQC------------------INEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQA 67 (291)
T ss_dssp HHHTTCHHHH------------------HHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHH
T ss_pred HHHHHHHHHH------------------HHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHH
Confidence 4556777777 777777777777763 4667788999999999999987765 36667788
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhc--ccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHh
Q 002100 715 LVYEGWILYDTGHREEALAKAEESISI--QRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNL 792 (967)
Q Consensus 715 ~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~l 792 (967)
+..++..+...+++++|++.+++.+.. +|++. .+++.+
T Consensus 68 ~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~----------------------------------------~~~~~l 107 (291)
T 3mkr_A 68 VRMFAEYLASHSRRDAIVAELDREMSRSVDVTNT----------------------------------------TFLLMA 107 (291)
T ss_dssp HHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCH----------------------------------------HHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCH----------------------------------------HHHHHH
Confidence 888999999999999999999998865 47555 789999
Q ss_pred HHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHH-----c-cCChHH
Q 002100 793 GSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS-----E-YCDRDM 866 (967)
Q Consensus 793 g~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-----~-~~~~~~ 866 (967)
|.++...|++++|+..|++ ++...++..+|.++..+|++++|++.|+++++.+|++.......+ . .+++++
T Consensus 108 a~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~e 184 (291)
T 3mkr_A 108 ASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184 (291)
T ss_dssp HHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHH
T ss_pred HHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHH
Confidence 9999999999999999998 677789999999999999999999999999999999864433322 1 278999
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHH-HHHHHHHHHhc
Q 002100 867 AKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLH-TQRDCEAALCL 944 (967)
Q Consensus 867 A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~-A~~~~~~al~~ 944 (967)
|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++.+|+ ++++.++|.++..+|++++ +.+++++++++
T Consensus 185 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998 5699999999999999976 57899999999
Q ss_pred CCCchhHHHHHHHHH
Q 002100 945 DPNHTDTLELYDKAT 959 (967)
Q Consensus 945 ~P~~~~~l~l~~r~~ 959 (967)
+|+|+.+.++..+..
T Consensus 265 ~P~~~~~~d~~~~~~ 279 (291)
T 3mkr_A 265 HRSHPFIKEYRAKEN 279 (291)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHH
Confidence 999999998766543
No 41
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.88 E-value=3.5e-23 Score=192.22 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=100.2
Q ss_pred cccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHc
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSR 317 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y 317 (967)
+.+++...+.++++++.+|||+|+|+|++|+|||.||+++|+||++||.++|.|+...+|++++ +++++|+.+|+|+|
T Consensus 8 h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~--~~~~~f~~ll~~~Y 85 (120)
T 2if5_A 8 HSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDF--VSAEALTALMDFAY 85 (120)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCS--SCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCC--CCHHHHHHHHHHHc
Confidence 4455566677888899999999999999999999999999999999999999999999999977 99999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHH
Q 002100 318 TKMLDSFDPRLVLELLSFANRFCCEELKSACDSYL 352 (967)
Q Consensus 318 t~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l 352 (967)
||++ .++.+++.+++.+|++|+++.|++.|+++|
T Consensus 86 t~~~-~~~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 86 TATL-TVSTANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HSCC-CCCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 9999 899999999999999999999999999987
No 42
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.88 E-value=1e-22 Score=185.68 Aligned_cols=104 Identities=19% Similarity=0.364 Sum_probs=92.9
Q ss_pred ccCCCCcccEEEEEcC----eEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCC
Q 002100 249 CSTSDEDWDMSFCIGN----DEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSF 324 (967)
Q Consensus 249 ~~~~~~~~Dv~~~v~~----~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~ 324 (967)
+++++.+|||+|+|+| ++|+|||.||+++|+||++||.++|.|+. .+|++++ +++++|+.+|+|+|||++ .+
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~--~~~~~f~~~l~~iYt~~~-~~ 77 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPD--VEPAAFLILLKYMYSDEI-DL 77 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETT--SCHHHHHHHHHHHHHCCC-CC
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCC--CCHHHHHHHHHHHcCCCc-cC
Confidence 4567899999999988 99999999999999999999999999998 9999977 999999999999999999 89
Q ss_pred CHHHHHHHHHHhchhChHHHHHHHHHHHHhhC
Q 002100 325 DPRLVLELLSFANRFCCEELKSACDSYLASMV 356 (967)
Q Consensus 325 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~ 356 (967)
+.+++.+++.+|++|+++.|++.|+++|.+.+
T Consensus 78 ~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 78 EADTVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999998764
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.9e-21 Score=203.55 Aligned_cols=235 Identities=11% Similarity=0.075 Sum_probs=212.6
Q ss_pred CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-------hHHhh
Q 002100 552 LSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPSY-------MMFYG 624 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~-------~~~~~ 624 (967)
.+..+..+|.+++..|++++|+..|+++++.++++.++..+|.++...|++++|+..++++++++|++ ..++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~- 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF- 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH-
Confidence 45678999999999999999999999999988778999999999999999999999999999998876 3455
Q ss_pred hhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 625 QLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLA 704 (967)
Q Consensus 625 ~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~a 704 (967)
..++.++...+++++| +..+.++++.+|. +.++...|++++|+..++++
T Consensus 83 -----~~l~~~~~~~~~~~~A------------------~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~ 131 (258)
T 3uq3_A 83 -----ARIGNAYHKLGDLKKT------------------IEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAE 131 (258)
T ss_dssp -----HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHcccHHHH------------------HHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHH
Confidence 7789999999999999 8999999999887 56788889999999999999
Q ss_pred HhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCc
Q 002100 705 RNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLR 784 (967)
Q Consensus 705 l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~ 784 (967)
+..+|.++.++..+|.++...|++++|+..++++++.+|+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------------------------------- 173 (258)
T 3uq3_A 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA-------------------------------------- 173 (258)
T ss_dssp HHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--------------------------------------
T ss_pred HHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH--------------------------------------
Confidence 999999999999999999999999999999999999988655
Q ss_pred hHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc------cCCHHHHH
Q 002100 785 KGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKA------RNNASAYE 856 (967)
Q Consensus 785 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~ 856 (967)
.++.++|.++...|++++|+.+|+++++. +...++..+|.++..+|++++|+..|+++++.. |++..++.
T Consensus 174 --~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~ 251 (258)
T 3uq3_A 174 --RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQ 251 (258)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHH
Confidence 78999999999999999999999999984 445689999999999999999999999999999 66655554
Q ss_pred HH
Q 002100 857 KR 858 (967)
Q Consensus 857 ~~ 858 (967)
.+
T Consensus 252 ~l 253 (258)
T 3uq3_A 252 LY 253 (258)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.88 E-value=2e-21 Score=201.46 Aligned_cols=197 Identities=17% Similarity=0.142 Sum_probs=144.6
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 675 PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 675 p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
|.++..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-------- 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL-------- 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--------
Confidence 778889999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc-----------ccHHHHHHHHHHHhccC--cHHHH
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC-----------EKLDLAADCYMNALNIK--HTRAH 821 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~-----------g~~~~A~~~~~~Al~~~--~~~a~ 821 (967)
.++.++|.++... |++++|+..|+++++.+ ...++
T Consensus 74 --------------------------------~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 121 (217)
T 2pl2_A 74 --------------------------------GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121 (217)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred --------------------------------HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHH
Confidence 7899999999988 77777777777777633 34467
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHH
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEA 901 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA 901 (967)
..+|.++..+|++++|+..|+++++.+ + ++.++.++|.+|...|++++|
T Consensus 122 ~~lg~~~~~~g~~~~A~~~~~~al~~~-~------------------------------~~~~~~~la~~~~~~g~~~~A 170 (217)
T 2pl2_A 122 LQRGLVYALLGERDKAEASLKQALALE-D------------------------------TPEIRSALAELYLSMGRLDEA 170 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-C------------------------------CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcc-c------------------------------chHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777777766666655 4 445556666666666666666
Q ss_pred HHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 902 IAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAAL 942 (967)
Q Consensus 902 i~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al 942 (967)
+..|+++++.+|+ ..++..+|.++..+|++++|+..|+++-
T Consensus 171 ~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 171 LAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 6666666666666 3466666666666666666666666553
No 45
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=223.18 Aligned_cols=300 Identities=13% Similarity=0.097 Sum_probs=235.2
Q ss_pred CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCch
Q 002100 552 LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S----PDCLELRAWISIALEDYDGALRDVRALLTLD------PSYM 620 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~------p~~~ 620 (967)
....++.+|..+...|++++|+..|++++...| + ..++..+|.++...|++++|+..+++++.+. |...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 345677788888888888888888888888877 4 3577788888888888888888888887762 2222
Q ss_pred HHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCC------hHHHHHHHHHHHHhcC-
Q 002100 621 MFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGK------SLLRFRQSLLLLRLNS- 693 (967)
Q Consensus 621 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~------~~~~~~~g~~~~~~g~- 693 (967)
.++ ..++.++...+++++| +..+.++++..|.. ...+..+|.++...|+
T Consensus 88 ~~~------~~la~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 143 (406)
T 3sf4_A 88 KAS------GNLGNTLKVLGNFDEA------------------IVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 143 (406)
T ss_dssp HHH------HHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCc
Confidence 233 6677788888888888 67777777665543 3478889999999999
Q ss_pred -------------------HHHHHHHHHHHHhc------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHH
Q 002100 694 -------------------QKAAMRSLRLARNY------STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAF 748 (967)
Q Consensus 694 -------------------~~~A~~~l~~al~~------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 748 (967)
+++|+..+++++.. .|....++..+|.++...|++++|+..+++++++.+...
T Consensus 144 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-- 221 (406)
T 3sf4_A 144 FGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-- 221 (406)
T ss_dssp CC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT--
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC--
Confidence 99999999999876 444567899999999999999999999999998776322
Q ss_pred HHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc--------HHH
Q 002100 749 FLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH--------TRA 820 (967)
Q Consensus 749 ~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--------~~a 820 (967)
+......++.++|.+|...|++++|+.+|+++++..+ ..+
T Consensus 222 --------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 269 (406)
T 3sf4_A 222 --------------------------------DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 269 (406)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------------------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHH
Confidence 0112235889999999999999999999999997322 238
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHH
Q 002100 821 HQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAE 900 (967)
Q Consensus 821 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e 900 (967)
+..+|.++..+|++++|+..++++++..+... ..+....++..+|.+|...|++++
T Consensus 270 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~------------------------~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 270 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN------------------------DRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------------------CHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC------------------------CcHHHHHHHHHHHHHHHHcCCHHH
Confidence 88999999999999999999999998766321 011224577889999999999999
Q ss_pred HHHHHHHHHhcCCC-------hHHHHHHHHHHHHcCChHH
Q 002100 901 AIAELSRAIAFKPD-------LQLLHLRAAFHDSMGDHLH 933 (967)
Q Consensus 901 Ai~~~~kal~~~p~-------~~~~~~~a~~~~~~g~~~~ 933 (967)
|+..|++++++.+. ..++..+|.++..+|+...
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 99999999987433 2378889999999998744
No 46
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.87 E-value=1.4e-22 Score=190.20 Aligned_cols=114 Identities=13% Similarity=0.234 Sum_probs=105.0
Q ss_pred cccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEe-ccCCCCHHHHHHHHHhH
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNF-SQNGISVEAMRAAEEFS 316 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~-~~~~~~~~~~~~~l~~~ 316 (967)
+...+...+.++++++.+|||+|+|+|++|+|||+|||++|+||++||.++|.| ...+|+| ++ +++++|+.+|+|+
T Consensus 12 ~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~--~~~~~f~~ll~~~ 88 (127)
T 1r29_A 12 HASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPE--INPEGFNILLDFM 88 (127)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTT--SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCC--CCHHHHHHHHHHH
Confidence 344555667778889999999999999999999999999999999999999999 7789999 66 9999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhh
Q 002100 317 RTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASM 355 (967)
Q Consensus 317 Yt~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 355 (967)
|||++ .++.+++.+++.+|++|+++.|++.|+++|.+.
T Consensus 89 Ytg~~-~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 89 YTSRL-NLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp HHSCC-CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred cCCCc-CcCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999 899999999999999999999999999999753
No 47
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.86 E-value=1.6e-22 Score=193.49 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=98.9
Q ss_pred cccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCC--CccceEEeccCCCCHHHHHHHHHh
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIE--SRREKVNFSQNGISVEAMRAAEEF 315 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e--~~~~~i~~~~~~~~~~~~~~~l~~ 315 (967)
+...+...+.++++++.+|||+|+|+|++|+|||+|||++|+||++||.++|.| +...+|.|++ +++++|+.+|+|
T Consensus 30 h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~--v~~~~f~~lL~f 107 (144)
T 2ppi_A 30 HAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEG--ISVMVMREILDY 107 (144)
T ss_dssp HHHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCS--SCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCC--CCHHHHHHHHHH
Confidence 344555667788899999999999999999999999999999999999998876 6677999976 999999999999
Q ss_pred HcCCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHH
Q 002100 316 SRTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLA 353 (967)
Q Consensus 316 ~Yt~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~ 353 (967)
+|||++ .++.+++.+|+.+|++|+++.|++.|+++|.
T Consensus 108 iYtg~~-~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L~ 144 (144)
T 2ppi_A 108 IFSGQI-RLNEDTIQDVVQAADLLLLTDLKTLCCEFLE 144 (144)
T ss_dssp HTTSCC-CCCTTTHHHHHHHHHHTTCHHHHHHHHTTC-
T ss_pred HhCCCC-CCCHHHHHHHHHHHHHhCcHHHHHHHHHHhC
Confidence 999999 8999999999999999999999999998863
No 48
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.86 E-value=4.3e-21 Score=218.08 Aligned_cols=306 Identities=13% Similarity=0.030 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCch------hHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHH
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHI------YSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQE 528 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~------~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~ 528 (967)
..+.+++.+|..++..|+|++|+.+|+++++..|. .++..++.++...|++.+|...+++++......+
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----- 81 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG----- 81 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-----
Confidence 34667889999999999999999999999999663 3445566666666666555555544433211100
Q ss_pred HhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C------hhHHHHHHHHHHHhcC
Q 002100 529 RSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S------PDCLELRAWISIALED 601 (967)
Q Consensus 529 ~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~------~~~~~~la~~~~~~g~ 601 (967)
..|....++..+|.++...|++++|+..+++++.+.| . ..++..+|.+|...|+
T Consensus 82 -------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 82 -------------------DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 0234466788999999999999999999999998876 2 4589999999999999
Q ss_pred --------------------HHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhcccccc
Q 002100 602 --------------------YDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDI 661 (967)
Q Consensus 602 --------------------~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~ 661 (967)
+++|+..+++++.+.+..............++.++...+++++|
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A---------------- 206 (406)
T 3sf4_A 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA---------------- 206 (406)
T ss_dssp TCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHH----------------
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHH----------------
Confidence 99999999988876322111111111226677888888888888
Q ss_pred chHHHHHHHHhcCCCChH------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch------hHHHHHHHHHHHHcCChH
Q 002100 662 GSLAVVHHMLANDPGKSL------LRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE------HEKLVYEGWILYDTGHRE 729 (967)
Q Consensus 662 ~al~~~~~~l~~~p~~~~------~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~------~~a~~~lg~~~~~~g~~~ 729 (967)
+..+.++++..|.... .+..+|.++...|++++|+..+++++...|.. ..++..+|.++...|+++
T Consensus 207 --~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 284 (406)
T 3sf4_A 207 --VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 284 (406)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred --HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHH
Confidence 7777777766544333 77788888888888888888888888776554 567778888888888888
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHH
Q 002100 730 EALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCY 809 (967)
Q Consensus 730 eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~ 809 (967)
+|+..+++++++.+... +.+....++..+|.+|...|++++|+.+|
T Consensus 285 ~A~~~~~~a~~~~~~~~----------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 285 KAIDYHLKHLAIAQELN----------------------------------DRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHHHHHHHTT----------------------------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC----------------------------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888887655221 01122357778888888888888888888
Q ss_pred HHHhcc----Cc----HHHHHHHHHHHHHhCCHHH
Q 002100 810 MNALNI----KH----TRAHQGLARVYHLKNQRKA 836 (967)
Q Consensus 810 ~~Al~~----~~----~~a~~~la~~~~~~g~~~~ 836 (967)
+++++. +. ..++..+|.++...|+...
T Consensus 331 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 331 EKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 888873 11 2367778888888877643
No 49
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.86 E-value=1.7e-20 Score=203.54 Aligned_cols=271 Identities=11% Similarity=0.034 Sum_probs=203.0
Q ss_pred HHHHhcCcHHHHHHHHHHHhccCC-C-hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHH
Q 002100 561 ILLVEENKLAAAITEINRIIGFKV-S-PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPL 638 (967)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~al~~~p-~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~ 638 (967)
...+..|+|++|+..++++...+| + .++...++++|+.+|++++|+..++. .+|....++ ..++..+..
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~------~~la~~~~~ 77 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAV------RMFAEYLAS 77 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHH------HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHH------HHHHHHHcC
Confidence 345667888888888888877777 3 46777788888888888888877655 244444444 556667777
Q ss_pred hhchhhHhhHHHHHhhhccccccchHHHHHHHHhc--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHH
Q 002100 639 VQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN--DPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLV 716 (967)
Q Consensus 639 ~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~ 716 (967)
.+++++| +..+++++.. +|+++.+++.+|.++...|++++|+..|++ |.+.+++.
T Consensus 78 ~~~~~~A------------------~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~ 134 (291)
T 3mkr_A 78 HSRRDAI------------------VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMA 134 (291)
T ss_dssp STTHHHH------------------HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHH
T ss_pred CCcHHHH------------------HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHH
Confidence 7777777 7888887765 588888888888888888888888888877 77888888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHH
Q 002100 717 YEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVY 796 (967)
Q Consensus 717 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~ 796 (967)
.+|.++..+|++++|++.++++++.+|+.... ....+|. .++
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-----------------------------------~l~~a~~---~l~ 176 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQDQDEDATLT-----------------------------------QLATAWV---SLA 176 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------------------------------HHHHHHH---HHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHH-----------------------------------HHHHHHH---HHH
Confidence 88888888888888888888888888854300 0001121 233
Q ss_pred HhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc----cCChHH-HHH
Q 002100 797 VDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE----YCDRDM-AKS 869 (967)
Q Consensus 797 ~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~-A~~ 869 (967)
...|++++|+..|+++++ ++...++.++|.++..+|++++|+..|+++++.+|+++.++..++. .|+.++ +..
T Consensus 177 ~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~ 256 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNR 256 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 456888888888888887 4445588888888888888888888888888888888888888883 277755 567
Q ss_pred HHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHH
Q 002100 870 DLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAEL 905 (967)
Q Consensus 870 ~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~ 905 (967)
.++++++++|+++.+.. +..+.+.|++|...|
T Consensus 257 ~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 257 YLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 88888888888887643 456667788877766
No 50
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.86 E-value=6.6e-21 Score=217.56 Aligned_cols=289 Identities=17% Similarity=0.126 Sum_probs=225.7
Q ss_pred CCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-Ch----hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhh
Q 002100 551 TLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SP----DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQ 625 (967)
Q Consensus 551 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~----~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 625 (967)
.....++.+|..+...|++++|+..|++++...| ++ .++..+|.+|...|++++|+..|++++++....
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------ 119 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM------ 119 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc------
Confidence 3445666777777777788888888877777777 43 467777777777777777777777776532110
Q ss_pred hhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002100 626 LHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLAR 705 (967)
Q Consensus 626 ~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al 705 (967)
...|....++..+|.++...|++++|+..|++++
T Consensus 120 ----------------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 153 (411)
T 4a1s_A 120 ----------------------------------------------NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL 153 (411)
T ss_dssp ----------------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------------------------------------cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0023345677889999999999999999999999
Q ss_pred hc------CCchhHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCC
Q 002100 706 NY------STSEHEKLVYEGWILYDTGH-----------------REEALAKAEESISIQRSFEAFFLKAYALADSSLNP 762 (967)
Q Consensus 706 ~~------~p~~~~a~~~lg~~~~~~g~-----------------~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~ 762 (967)
+. .|....++..+|.++...|+ +++|+..+++++++.+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~---------------- 217 (411)
T 4a1s_A 154 TLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG---------------- 217 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT----------------
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC----------------
Confidence 88 56667899999999999999 7888888877775543111
Q ss_pred CchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH--------HHHHHHHHHHHHhCCH
Q 002100 763 ESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT--------RAHQGLARVYHLKNQR 834 (967)
Q Consensus 763 ~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~--------~a~~~la~~~~~~g~~ 834 (967)
..+....++.++|.+|...|++++|+.+|+++++..+. .++..+|.++..+|++
T Consensus 218 ------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (411)
T 4a1s_A 218 ------------------DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQF 279 (411)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCH
T ss_pred ------------------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCH
Confidence 11233468999999999999999999999999984322 2889999999999999
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 835 KAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 835 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
++|+..|+++++..+.... .+....++..+|.++...|++++|+.+|+++++..+.
T Consensus 280 ~~A~~~~~~al~~~~~~~~------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 280 EDAAEHYKRTLALAVELGE------------------------REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTC------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC------------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999987763210 0112457788999999999999999999999987554
Q ss_pred h-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch
Q 002100 915 L-------QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHT 949 (967)
Q Consensus 915 ~-------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~ 949 (967)
. .++..+|.+|..+|++++|+..|++++++.+...
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 1 3888899999999999999999999999987644
No 51
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.86 E-value=5.5e-21 Score=218.22 Aligned_cols=283 Identities=12% Similarity=0.033 Sum_probs=231.7
Q ss_pred cchhHHHHHhhcCChHHHHHHHHHhHhhCCCCc----hhHHHHHHHHHhcCcHHHHHHHHHHHhcc------CC-ChhHH
Q 002100 521 PVGWMYQERSLYCSGKEKMMDLNTATELDPTLS----YPYKYRAILLVEENKLAAAITEINRIIGF------KV-SPDCL 589 (967)
Q Consensus 521 ~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p-~~~~~ 589 (967)
..|..+...+.| ++|+..|+++++++|++. .++..+|.++...|++++|+..|++++.+ .| ...++
T Consensus 53 ~~g~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 53 LEGERLCNAGDC---RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHTTCH---HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCcH---HHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 456666666655 999999999999999986 58999999999999999999999999987 45 67899
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHH
Q 002100 590 ELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHH 669 (967)
Q Consensus 590 ~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~ 669 (967)
..+|.+|..+|++++|+..|++++++.+....
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------------------------------------ 161 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGD------------------------------------------------ 161 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC------------------------------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc------------------------------------------------
Confidence 99999999999999999999999875332110
Q ss_pred HHhcCCCChHHHHHHHHHHHHhcC-----------------HHHHHHHHHHHHhcC------CchhHHHHHHHHHHHHcC
Q 002100 670 MLANDPGKSLLRFRQSLLLLRLNS-----------------QKAAMRSLRLARNYS------TSEHEKLVYEGWILYDTG 726 (967)
Q Consensus 670 ~l~~~p~~~~~~~~~g~~~~~~g~-----------------~~~A~~~l~~al~~~------p~~~~a~~~lg~~~~~~g 726 (967)
.|.....+..+|.++...|+ +++|+..++++++.. +....++..+|.++...|
T Consensus 162 ----~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 237 (411)
T 4a1s_A 162 ----RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLG 237 (411)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred ----hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 11223456778888888888 999999999988764 334568999999999999
Q ss_pred ChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHH
Q 002100 727 HREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAA 806 (967)
Q Consensus 727 ~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~ 806 (967)
++++|+..+++++++.+... .......++.++|.+|...|++++|+
T Consensus 238 ~~~~A~~~~~~al~~~~~~~----------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (411)
T 4a1s_A 238 DFQAAIEHHQERLRIAREFG----------------------------------DRAAERRANSNLGNSHIFLGQFEDAA 283 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHT----------------------------------CHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcC----------------------------------CcHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999998877322 00112358899999999999999999
Q ss_pred HHHHHHhccCc--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccC
Q 002100 807 DCYMNALNIKH--------TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLD 878 (967)
Q Consensus 807 ~~~~~Al~~~~--------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~ 878 (967)
.+|+++++..+ ..++..+|.++..+|++++|+..++++++..+.. ...
T Consensus 284 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------------------~~~ 339 (411)
T 4a1s_A 284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL------------------------GDR 339 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------------TCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC------------------------CCh
Confidence 99999998433 3488999999999999999999999999876531 011
Q ss_pred CCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH
Q 002100 879 PMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ 916 (967)
Q Consensus 879 p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~ 916 (967)
+....++..+|.+|...|++++|+.+|++++++.+...
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 12345788899999999999999999999999987743
No 52
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.86 E-value=1.6e-22 Score=186.97 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=98.4
Q ss_pred ccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcC
Q 002100 239 RDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
...+...+.++++++.+|||+|+|+|++|+|||.|||++|+||++||.+++ ..+|+|++ +++++|+.+|+|+||
T Consensus 8 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~~--~~~~~f~~ll~~iYt 81 (119)
T 3b84_A 8 SVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLPA--GFAEIFGLLLDFFYT 81 (119)
T ss_dssp HHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEECG--GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeCC--CCHHHHHHHHHHHcC
Confidence 344455667778889999999999999999999999999999999999876 56899977 999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhh
Q 002100 319 KMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASM 355 (967)
Q Consensus 319 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 355 (967)
|++ .++.+++.+++.+|++|+++.|++.|+++|.+.
T Consensus 82 g~~-~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 82 GHL-ALTSGNRDQVLLAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp SCC-CCCTTTHHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred CCC-ccCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence 999 899999999999999999999999999998654
No 53
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.85 E-value=1.5e-22 Score=192.65 Aligned_cols=119 Identities=14% Similarity=0.185 Sum_probs=107.0
Q ss_pred cccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHc
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSR 317 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y 317 (967)
+...+...+.++++++.+|||+|+|+|++|+|||+|||++|+||++||.+++.|+ ..|.++ +++++++|+.+|+|+|
T Consensus 19 ~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~-~~v~~~~~~~lL~~~Y 95 (138)
T 2z8h_A 19 HSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLP-EEVTVKGFEPLIQFAY 95 (138)
T ss_dssp HHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECC-TTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeC-CCCCHHHHHHHHHHhc
Confidence 3445556677788889999999999999999999999999999999999998774 578885 2499999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhh
Q 002100 318 TKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIED 361 (967)
Q Consensus 318 t~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n 361 (967)
||++ .++.+++.+|+.+|++|+++.|++.|+++|.+.++ .+|
T Consensus 96 tg~~-~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~-~sn 137 (138)
T 2z8h_A 96 TAKL-ILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFL-DST 137 (138)
T ss_dssp HSCC-CCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCS-CCC
T ss_pred CCCc-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-ccc
Confidence 9999 89999999999999999999999999999999987 554
No 54
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=1.6e-17 Score=203.00 Aligned_cols=373 Identities=12% Similarity=0.011 Sum_probs=266.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhCc-----hhHHHHHHHHHHhcCChHHHHHHHHHHHh-ccCcchhHHHHHhhcCCh
Q 002100 462 QLGVVMLEREEYKDAQNWFKAAVEAGH-----IYSLVGVARTKFKRGHKYSAYKLMNSLIS-DYTPVGWMYQERSLYCSG 535 (967)
Q Consensus 462 ~lG~~~~~~g~y~~A~~~f~~al~~~~-----~~a~~~la~~~~~~g~~~~A~~~l~~~i~-~~~~~g~~~~~~~~y~~~ 535 (967)
.....|...|++.+|++.|++++-.+. ......+++...+. +.....+...++-. ..+..|.++...++|
T Consensus 990 ~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d~~eIA~Iai~lgly--- 1065 (1630)
T 1xi4_A 990 VTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIANIAISNELF--- 1065 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhccHHHHHHHHHhCCCH---
Confidence 466778899999999999999994321 23333355444443 33333333333322 234467777777777
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 615 (967)
++|...|+++- .........+...+++++|++.++++ ..+.+|+.+|..+...|++++|+..|.++
T Consensus 1066 EEAf~IYkKa~-------~~~~A~~VLie~i~nldrAiE~Aerv----n~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1066 EEAFAIFRKFD-------VNTSAVQVLIEHIGNLDRAYEFAERC----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHHHHcC-------CHHHHHHHHHHHHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 99999999872 11122333444778888888888765 24788889999999999999999999775
Q ss_pred CCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHH
Q 002100 616 DPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQK 695 (967)
Q Consensus 616 ~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~ 695 (967)
+++..+ ...+..+...++|++| +..+..+.+..+. +.+...+|.+|.++++++
T Consensus 1132 --dD~say------~eVa~~~~~lGkyEEA------------------IeyL~mArk~~~e-~~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A 1132 --DDPSSY------MEVVQAANTSGNWEEL------------------VKYLQMARKKARE-SYVETELIFALAKTNRLA 1184 (1630)
T ss_pred --CChHHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHhhccc-ccccHHHHHHHHhhcCHH
Confidence 666677 5568888888888888 8888888877643 333445888888888887
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHH
Q 002100 696 AAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEA 775 (967)
Q Consensus 696 ~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~ 775 (967)
+ +..| + ..++ ...+..+|..++..|+|++|...|.++-
T Consensus 1185 e-le~f---I-~~~n-~ad~~~iGd~le~eg~YeeA~~~Y~kA~------------------------------------ 1222 (1630)
T 1xi4_A 1185 E-LEEF---I-NGPN-NAHIQQVGDRCYDEKMYDAAKLLYNNVS------------------------------------ 1222 (1630)
T ss_pred H-HHHH---H-hCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhh------------------------------------
Confidence 4 4433 2 2333 4566678999999999999999888752
Q ss_pred hcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHH
Q 002100 776 LRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAY 855 (967)
Q Consensus 776 ~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 855 (967)
.|..+|.++..+|++++|++++++| +...+|...+.++...|++..|...... +..+|+ .+
T Consensus 1223 ------------ny~rLA~tLvkLge~q~AIEaarKA---~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~d---eL 1283 (1630)
T 1xi4_A 1223 ------------NFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD---EL 1283 (1630)
T ss_pred ------------HHHHHHHHHHHhCCHHHHHHHHHHh---CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHH---HH
Confidence 5677888888888899999888888 4457888888888888888888887764 444443 22
Q ss_pred HHHH----ccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHhcCCC------hHHHHHHHH
Q 002100 856 EKRS----EYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDD--HKEAEAIAELSRAIAFKPD------LQLLHLRAA 923 (967)
Q Consensus 856 ~~~~----~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~--g~~~eAi~~~~kal~~~p~------~~~~~~~a~ 923 (967)
..+. ..|.+++|+..+++++.++|.+...+..+|.+|.+- ++..++++.|...+.+.|- ...|..+..
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHH
Confidence 3333 238888899988888888888888888888777655 6788888888888777662 346777788
Q ss_pred HHHHcCChHHHHHHHHH
Q 002100 924 FHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 924 ~~~~~g~~~~A~~~~~~ 940 (967)
+|.+-|+++.|+..+-+
T Consensus 1364 LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1364 LYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHhcccHHHHHHHHHh
Confidence 88888888888844433
No 55
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.85 E-value=6.3e-22 Score=183.75 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=100.2
Q ss_pred ccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcC
Q 002100 239 RDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
...+...+.++++++.+|||+|+|+|++|+|||.|||++|+||++||.++ ..+|++++ +++++|+.+|+|+||
T Consensus 12 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~--~~~~~f~~ll~~~Yt 84 (121)
T 1buo_A 12 PTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDF--LSPKTFQQILEYAYT 84 (121)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECS--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeCC--CCHHHHHHHHHhhcC
Confidence 44555666778888999999999999999999999999999999999874 56799976 999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhC
Q 002100 319 KMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMV 356 (967)
Q Consensus 319 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~ 356 (967)
|++ .++++++.+++.+|++|+++.|++.|+++|.+.|
T Consensus 85 g~~-~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 85 ATL-QAKAEDLDDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp SCC-CCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCc-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 999 8999999999999999999999999999998754
No 56
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=1.5e-17 Score=203.19 Aligned_cols=415 Identities=10% Similarity=0.041 Sum_probs=301.2
Q ss_pred ccchHHHHHHHHHHHhhh--chHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHH
Q 002100 435 KSNTTVMLLERLVESATE--SWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLM 512 (967)
Q Consensus 435 ~~~~~~~ll~~l~~~~~~--~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l 512 (967)
....+.++++++.-.... +-.....+..++.+....++..+.+.-+++.+ .-.+|.++...|.+++|...|
T Consensus 1000 lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d-------~~eIA~Iai~lglyEEAf~IY 1072 (1630)
T 1xi4_A 1000 LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYD-------APDIANIAISNELFEEAFAIF 1072 (1630)
T ss_pred CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhcc-------HHHHHHHHHhCCCHHHHHHHH
Confidence 445556666665522110 11122222334444444445555554444322 223678888899999999999
Q ss_pred HHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHH
Q 002100 513 NSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELR 592 (967)
Q Consensus 513 ~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l 592 (967)
++.-.........+...+.| ++|++.++++ +.+.+|+.+|.++...|++++|+..|.++ .++..|..+
T Consensus 1073 kKa~~~~~A~~VLie~i~nl---drAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~eV 1140 (1630)
T 1xi4_A 1073 RKFDVNTSAVQVLIEHIGNL---DRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEV 1140 (1630)
T ss_pred HHcCCHHHHHHHHHHHHhhH---HHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHHHH
Confidence 99742222223333345544 7777777654 67899999999999999999999999875 578899999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHh
Q 002100 593 AWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLA 672 (967)
Q Consensus 593 a~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~ 672 (967)
|.++.+.|+|++|++.|..+.+..++... . ..++..|...++++. ++.| +
T Consensus 1141 a~~~~~lGkyEEAIeyL~mArk~~~e~~I-d------t~LafaYAKl~rlee-------------------le~f---I- 1190 (1630)
T 1xi4_A 1141 VQAANTSGNWEELVKYLQMARKKARESYV-E------TELIFALAKTNRLAE-------------------LEEF---I- 1190 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhcccccc-c------HHHHHHHHhhcCHHH-------------------HHHH---H-
Confidence 99999999999999999999988755311 1 224566666555542 3333 2
Q ss_pred cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Q 002100 673 NDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKA 752 (967)
Q Consensus 673 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 752 (967)
..+ +...+...|..+...|+|++|+..|.++ ..|..+|.++.++|++++|++.+.+|. ++
T Consensus 1191 ~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~--n~--------- 1250 (1630)
T 1xi4_A 1191 NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--ST--------- 1250 (1630)
T ss_pred hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC--CH---------
Confidence 233 3456668999999999999999999996 478899999999999999999999984 22
Q ss_pred HHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC
Q 002100 753 YALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKN 832 (967)
Q Consensus 753 ~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g 832 (967)
.+|.+.+.++.+.|+|..|..+... +. .+++.+..++..|...|
T Consensus 1251 ----------------------------------~aWkev~~acve~~Ef~LA~~cgl~-Ii-v~~deLeeli~yYe~~G 1294 (1630)
T 1xi4_A 1251 ----------------------------------RTWKEVCFACVDGKEFRLAQMCGLH-IV-VHADELEELINYYQDRG 1294 (1630)
T ss_pred ----------------------------------HHHHHHHHHHhhhhHHHHHHHHHHh-hh-cCHHHHHHHHHHHHHcC
Confidence 6888999999999999999998874 32 34555668999999999
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHc----c--CChHHHHHHHHHhhccCC-----CCchHHHHHHHHHHhCCCHHHH
Q 002100 833 QRKAAYDEMTKLIEKARNNASAYEKRSE----Y--CDRDMAKSDLSMATQLDP-----MRTYPYRYRAAVLMDDHKEAEA 901 (967)
Q Consensus 833 ~~~~A~~~~~~al~~~p~~~~~~~~~~~----~--~~~~~A~~~l~~al~l~p-----~~~~~~~~la~~~~~~g~~~eA 901 (967)
.+++|+..+++++.++|.+...+..++. | ++..+++..|...+.+.| .....|..+..+|.+-|+++.|
T Consensus 1295 ~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1295 YFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred CHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 9999999999999999999888877774 2 778899999999999888 7888999999999999999999
Q ss_pred HHH-------------HHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHH
Q 002100 902 IAE-------------LSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYD 956 (967)
Q Consensus 902 i~~-------------~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~ 956 (967)
+.. |...+....+++.++....+|. +....++.++..++.-.-++..+..++.
T Consensus 1375 ~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl--~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1375 IITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH--hhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 933 3333334444678887777777 5555666666666644444444444443
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.85 E-value=2.1e-19 Score=193.03 Aligned_cols=229 Identities=14% Similarity=0.098 Sum_probs=207.2
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccchHHHH
Q 002100 674 DPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYD----TGHREEALAKAEESISIQRSFEAFF 749 (967)
Q Consensus 674 ~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~ 749 (967)
+|.++.+++.+|.++...|++++|+..|+++++ |+++.+++.+|.++.. .+++++|+..|+++++.+ +.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~--- 74 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YS--- 74 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH---
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CH---
Confidence 477889999999999999999999999999999 7788999999999999 999999999999999664 22
Q ss_pred HHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHh----cccHHHHHHHHHHHhccCcHHHHHHHH
Q 002100 750 LKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVD----CEKLDLAADCYMNALNIKHTRAHQGLA 825 (967)
Q Consensus 750 ~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~~~~~~a~~~la 825 (967)
.+++++|.+|.. .+++++|+.+|+++++.++..++..+|
T Consensus 75 -------------------------------------~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 117 (273)
T 1ouv_A 75 -------------------------------------NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLG 117 (273)
T ss_dssp -------------------------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 689999999999 999999999999999999999999999
Q ss_pred HHHHH----hCCHHHHHHHHHHHHHHccCCHHHHHHHHc--------cCChHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 002100 826 RVYHL----KNQRKAAYDEMTKLIEKARNNASAYEKRSE--------YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLM 893 (967)
Q Consensus 826 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~--------~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~ 893 (967)
.+|.. .+++++|+..|+++++.. +..++..++. .+++++|+..|+++++.+ ++.++..+|.+|.
T Consensus 118 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 118 GIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYH 193 (273)
T ss_dssp HHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH
Confidence 99999 999999999999999976 5677777762 479999999999999874 5789999999999
Q ss_pred h----CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCchhH
Q 002100 894 D----DHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDS----MGDHLHTQRDCEAALCLDPNHTDT 951 (967)
Q Consensus 894 ~----~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~~ 951 (967)
. .+++++|+.+|+++++..| ..+++.+|.+|.. .+++++|+..|++++++.|++...
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 9 9999999999999999977 6789999999999 999999999999999999876543
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.85 E-value=3.7e-20 Score=203.68 Aligned_cols=274 Identities=17% Similarity=0.106 Sum_probs=210.7
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHH
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAV 666 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~ 666 (967)
..+...|..+...|++++|+..|+++++.+|+++...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------------------- 42 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTL------------------------------------------- 42 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHH-------------------------------------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHH-------------------------------------------
Confidence 3456667777777777777777777777766644322
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 667 VHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNY------STSEHEKLVYEGWILYDTGHREEALAKAEESIS 740 (967)
Q Consensus 667 ~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 740 (967)
..++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..++++++
T Consensus 43 -----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 111 (338)
T 3ro2_A 43 -----------SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 111 (338)
T ss_dssp -----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 123445566666677777777777776655 344567888999999999999999999999997
Q ss_pred cccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhccc-------------------
Q 002100 741 IQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEK------------------- 801 (967)
Q Consensus 741 ~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~------------------- 801 (967)
+.+... +......++..+|.++...|+
T Consensus 112 ~~~~~~----------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 112 ISRELN----------------------------------DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp HHHHTT----------------------------------CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred HHHHhc----------------------------------CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 766321 011223688899999999999
Q ss_pred -HHHHHHHHHHHhcc----C-c---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCC------HHHHHHHHcc----C
Q 002100 802 -LDLAADCYMNALNI----K-H---TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNN------ASAYEKRSEY----C 862 (967)
Q Consensus 802 -~~~A~~~~~~Al~~----~-~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~----~ 862 (967)
+++|+..|++++.. + + ..++..+|.++...|++++|+..++++++..+.. ..++..++.. +
T Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g 237 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 237 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC
Confidence 99999999998873 1 1 2378889999999999999999999999887643 2266666632 9
Q ss_pred ChHHHHHHHHHhhccCCCC------chHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHHcC
Q 002100 863 DRDMAKSDLSMATQLDPMR------TYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-------QLLHLRAAFHDSMG 929 (967)
Q Consensus 863 ~~~~A~~~l~~al~l~p~~------~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-------~~~~~~a~~~~~~g 929 (967)
++++|+..+++++++.|.. ..++..+|.++...|++++|+..++++++..+.. .++..+|.++..+|
T Consensus 238 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 317 (338)
T 3ro2_A 238 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 317 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 9999999999999887665 6788899999999999999999999999876541 27888999999999
Q ss_pred ChHHHHHHHHHHHhcCCCc
Q 002100 930 DHLHTQRDCEAALCLDPNH 948 (967)
Q Consensus 930 ~~~~A~~~~~~al~~~P~~ 948 (967)
++++|...+++++++.+..
T Consensus 318 ~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 318 NHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp CHHHHHHHHHHHHHC----
T ss_pred ChHHHHHHHHHHHHHHHhh
Confidence 9999999999999998764
No 59
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.85 E-value=6.6e-22 Score=182.27 Aligned_cols=110 Identities=19% Similarity=0.228 Sum_probs=98.1
Q ss_pred ccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcC
Q 002100 239 RDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
...+...+.++++++.+|||+|+|+|++|+|||.|||++|+||++||.++ ....|.|+.+++++++|+.+|+|+||
T Consensus 6 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt 81 (116)
T 2vpk_A 6 CEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYT 81 (116)
T ss_dssp HHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcC
Confidence 33445566777888999999999999999999999999999999999987 35678887224999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHH
Q 002100 319 KMLDSFDPRLVLELLSFANRFCCEELKSACDSYLA 353 (967)
Q Consensus 319 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~ 353 (967)
|++ .++.+++.+++.+|++|+++.|++.|+++|.
T Consensus 82 ~~~-~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 82 GTL-NLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp SCC-CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred CCc-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999 8999999999999999999999999999985
No 60
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.84 E-value=3.5e-22 Score=189.06 Aligned_cols=113 Identities=15% Similarity=0.092 Sum_probs=97.6
Q ss_pred cccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHc
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSR 317 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y 317 (967)
+...+...+.++++++.+|||+|+|+|++|+|||+|||++|+||++||.+++ ..+|+|++ +++++|+.+|+|||
T Consensus 8 h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~--~~~~~f~~lL~fiY 81 (135)
T 2yy9_A 8 HSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPA--GFAEIFGLLLDFFY 81 (135)
T ss_dssp HHHHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEECG--GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCC--CCHHHHHHHHHHHh
Confidence 3445556677788899999999999999999999999999999999999877 56799977 99999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCC
Q 002100 318 TKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVS 357 (967)
Q Consensus 318 t~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~ 357 (967)
||++ .++.+++.+|+.+|++|+++.|++.|+++|.+.+.
T Consensus 82 tg~~-~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~ 120 (135)
T 2yy9_A 82 TGHL-ALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSV 120 (135)
T ss_dssp HSCC-CCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC----
T ss_pred CCCC-CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc
Confidence 9999 89999999999999999999999999999988875
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.84 E-value=6.5e-20 Score=201.75 Aligned_cols=273 Identities=14% Similarity=0.053 Sum_probs=220.6
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCC----chhHHHHHHHHHhcCcHHHHHHHHHHHhcc------CC-ChhHHHH
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTL----SYPYKYRAILLVEENKLAAAITEINRIIGF------KV-SPDCLEL 591 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p-~~~~~~~ 591 (967)
|..+...+.| ++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++.. .| ...++..
T Consensus 12 g~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 12 GERLCKSGDC---RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHTTCH---HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhccH---HHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 4555555645 99999999999999988 467889999999999999999999999887 33 4678999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhc--------------------hhhHhhHHHH
Q 002100 592 RAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQ--------------------WSQADCWMQL 651 (967)
Q Consensus 592 la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~A~~~~~l 651 (967)
+|.++...|++++|+..+++++++.|..............++.++...++ +++|
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A------ 162 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA------ 162 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH------
Confidence 99999999999999999999999866543321112223678899999998 7777
Q ss_pred HhhhccccccchHHHHHHHHhc------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchh------HHHHHHH
Q 002100 652 YDRWSSVDDIGSLAVVHHMLAN------DPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEH------EKLVYEG 719 (967)
Q Consensus 652 ~~~~~~~d~~~al~~~~~~l~~------~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~------~a~~~lg 719 (967)
+..+.++++. .+.....+..+|.++...|++++|+..++++++..+... .++..+|
T Consensus 163 ------------~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 230 (338)
T 3ro2_A 163 ------------VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 230 (338)
T ss_dssp ------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 6666666554 334456788999999999999999999999998766543 3889999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc
Q 002100 720 WILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC 799 (967)
Q Consensus 720 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~ 799 (967)
.++...|++++|+..+++++.+.+... ..+....++..+|.++...
T Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~~~~~----------------------------------~~~~~~~~~~~la~~~~~~ 276 (338)
T 3ro2_A 231 NAYIFLGEFETASEYYKKTLLLARQLK----------------------------------DRAVEAQSCYSLGNTYTLL 276 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTT----------------------------------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhc----------------------------------chhHHHHHHHHHHHHHHHh
Confidence 999999999999999999997766321 0112236889999999999
Q ss_pred ccHHHHHHHHHHHhccCc--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002100 800 EKLDLAADCYMNALNIKH--------TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 800 g~~~~A~~~~~~Al~~~~--------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 850 (967)
|++++|+.+|+++++..+ ..++..+|.++..+|++++|...++++++..+.
T Consensus 277 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 277 QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 999999999999998322 237889999999999999999999999998765
No 62
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.84 E-value=4.2e-19 Score=190.68 Aligned_cols=233 Identities=12% Similarity=0.019 Sum_probs=206.1
Q ss_pred CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 549 DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIA----LEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 549 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
+|+++.+++.+|.++...|++++|+..|+++++ | ++.+++.+|.+|.. .+++++|+..|+++++.+ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 578889999999999999999999999999998 6 78899999999999 999999999999999885 56666
Q ss_pred hhhhhhhhHhhhHHH----hhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH----hcCHH
Q 002100 624 GQLHGDNLVETLQPL----VQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLR----LNSQK 695 (967)
Q Consensus 624 ~~~~~~~~~~~l~~~----~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~----~g~~~ 695 (967)
+.++.++.. .+++++| +..++++++.+ ++.+++.+|.+|.. .++++
T Consensus 78 ------~~lg~~~~~g~~~~~~~~~A------------------~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~ 131 (273)
T 1ouv_A 78 ------HLLGNLYYSGQGVSQNTNKA------------------LQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFK 131 (273)
T ss_dssp ------HHHHHHHHHTSSSCCCHHHH------------------HHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ------HHHHHHHhCCCCcccCHHHH------------------HHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHH
Confidence 778888888 8888888 88999998874 78899999999999 99999
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHH
Q 002100 696 AAMRSLRLARNYSTSEHEKLVYEGWILYD----TGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQL 771 (967)
Q Consensus 696 ~A~~~l~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~ 771 (967)
+|+..|+++++.. ++.++..+|.++.. .+++++|+..|+++++..+ .
T Consensus 132 ~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~------------------------- 182 (273)
T 1ouv_A 132 KAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD--S------------------------- 182 (273)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--H-------------------------
T ss_pred HHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--H-------------------------
Confidence 9999999999976 56788999999998 9999999999999986643 2
Q ss_pred HHHHhcCCCCCCchHHHHHHhHHHHHh----cccHHHHHHHHHHHhccCcHHHHHHHHHHHHH----hCCHHHHHHHHHH
Q 002100 772 LEEALRCPSDGLRKGQALNNLGSVYVD----CEKLDLAADCYMNALNIKHTRAHQGLARVYHL----KNQRKAAYDEMTK 843 (967)
Q Consensus 772 le~~~~~~~~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~----~g~~~~A~~~~~~ 843 (967)
.+++++|.+|.. .+++++|+.+|+++++.++..++..+|.+|.. .+++++|+++|++
T Consensus 183 ---------------~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 183 ---------------PGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp ---------------HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred ---------------HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 678899999999 99999999999999999998899999999999 9999999999999
Q ss_pred HHHHccCCHHHH
Q 002100 844 LIEKARNNASAY 855 (967)
Q Consensus 844 al~~~p~~~~~~ 855 (967)
+++..|+++..+
T Consensus 248 a~~~~~~~a~~~ 259 (273)
T 1ouv_A 248 GCKLGAKGACDI 259 (273)
T ss_dssp HHHHTCHHHHHH
T ss_pred HHHcCCHHHHHH
Confidence 999988644433
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.83 E-value=2.3e-19 Score=180.19 Aligned_cols=172 Identities=10% Similarity=0.099 Sum_probs=164.2
Q ss_pred CCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhh
Q 002100 551 TLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGD 629 (967)
Q Consensus 551 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 629 (967)
+.+.+|+.+|.++..+|++++|++.|+++++++| ++.++..+|.+|..+|++++|+..+.+++..+|++..++
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------ 76 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAY------ 76 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHH------
Confidence 4567899999999999999999999999999999 899999999999999999999999999999999999988
Q ss_pred hhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 002100 630 NLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYST 709 (967)
Q Consensus 630 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p 709 (967)
...+.++...++++.+ +..+.++++.+|.+..++..+|.++..+|++++|+..|+++++.+|
T Consensus 77 ~~~~~~~~~~~~~~~a------------------~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 77 YILGSANFMIDEKQAA------------------IDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138 (184)
T ss_dssp HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc
Confidence 7788899999999998 8999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 710 SEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 710 ~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
+++.++..+|.++..+|++++|+..|+++++++|+++
T Consensus 139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 9999999999999999999999999999999999765
No 64
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.83 E-value=8.7e-20 Score=195.40 Aligned_cols=232 Identities=16% Similarity=0.080 Sum_probs=171.3
Q ss_pred HHHHHHHHhcC----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 664 LAVVHHMLAND----PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 664 l~~~~~~l~~~----p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
+..+.++++.. |.++..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 104 (275)
T 1xnf_A 25 LARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 104 (275)
T ss_dssp HHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888888763 45567788888888888888888888888888888888888888888888888888888888888
Q ss_pred hcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH
Q 002100 740 SIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR 819 (967)
Q Consensus 740 ~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 819 (967)
+++|++. .++..+|.+|...|++++|+.+|+++++..+..
T Consensus 105 ~~~~~~~----------------------------------------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 105 ELDPTYN----------------------------------------YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp HHCTTCT----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hcCcccc----------------------------------------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 8877544 678888888888888888888888888744432
Q ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc---CChHHHHHHHHHhhccCCCC----chHHHHHHH
Q 002100 820 --AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY---CDRDMAKSDLSMATQLDPMR----TYPYRYRAA 890 (967)
Q Consensus 820 --a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~---~~~~~A~~~l~~al~l~p~~----~~~~~~la~ 890 (967)
....++ +....|++++|+..+++++...|++...+.....+ ++.++|+..++++++.+|.. +.++..+|.
T Consensus 145 ~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 223 (275)
T 1xnf_A 145 PFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGK 223 (275)
T ss_dssp HHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHH
Confidence 333333 44666888888888888888887766655544422 56677888888877776643 567777888
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHH
Q 002100 891 VLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDC 938 (967)
Q Consensus 891 ~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~ 938 (967)
++...|++++|+..|+++++.+|+.. ...+.++..+|++++|+..|
T Consensus 224 ~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 224 YYLSLGDLDSATALFKLAVANNVHNF--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCTTC--HHHHHHHHHHHHHHHC----
T ss_pred HHHHcCCHHHHHHHHHHHHhCCchhH--HHHHHHHHHHHHHHhhHHHH
Confidence 88888888888888888888777642 22366677777777777776
No 65
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.83 E-value=1.7e-21 Score=180.21 Aligned_cols=108 Identities=16% Similarity=0.237 Sum_probs=97.7
Q ss_pred cccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHc
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSR 317 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y 317 (967)
+...+...+.++++++.+|||+|+|+|++|+|||.||+++|+||++||.++ ..+|.+++ +++++|+.+|+|+|
T Consensus 10 h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~--~~~~~f~~ll~~~Y 82 (119)
T 2q81_A 10 HSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHLDI--SNAAGLGQVLEFMY 82 (119)
T ss_dssp HHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC-----CSGGGGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCC--CCHHHHHHHHHHHc
Confidence 344555667778888999999999999999999999999999999999863 45788876 99999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHH
Q 002100 318 TKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLA 353 (967)
Q Consensus 318 t~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~ 353 (967)
||++ .++.+++.+++.+|++|+++.|++.|+++|.
T Consensus 83 tg~~-~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 83 TAKL-SLSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HSCC-CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CCCC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999 8999999999999999999999999999984
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.83 E-value=2.7e-19 Score=179.66 Aligned_cols=177 Identities=19% Similarity=0.201 Sum_probs=163.6
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchH
Q 002100 585 SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSL 664 (967)
Q Consensus 585 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al 664 (967)
++.+|+.+|.+|..+|++++|+..|+++++++|++..++ ..++.++...+++++| +
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~la~~~~~~~~~~~a------------------~ 59 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETL------LKLGKTYMDIGLPNDA------------------I 59 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCHHHH------------------H
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHCCCHHHH------------------H
Confidence 567899999999999999999999999999999999998 7789999999999999 8
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccc
Q 002100 665 AVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRS 744 (967)
Q Consensus 665 ~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 744 (967)
..+.+++...|..+..+..+|.++...++++.|+..+.+++..+|++..++..+|.++..+|++++|+..|+++++++|+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~ 139 (184)
T 3vtx_A 60 ESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG 139 (184)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred hHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHH
Q 002100 745 FEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGL 824 (967)
Q Consensus 745 ~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~l 824 (967)
+. .+++++|.+|..+|++++|+.+|++|++++|..+.+.|
T Consensus 140 ~~----------------------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~~l 179 (184)
T 3vtx_A 140 FI----------------------------------------RAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYEL 179 (184)
T ss_dssp CH----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHHHCS
T ss_pred hh----------------------------------------hHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHHHHH
Confidence 66 78999999999999999999999999998887766655
Q ss_pred H
Q 002100 825 A 825 (967)
Q Consensus 825 a 825 (967)
|
T Consensus 180 a 180 (184)
T 3vtx_A 180 A 180 (184)
T ss_dssp C
T ss_pred H
Confidence 4
No 67
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.82 E-value=2.4e-19 Score=191.97 Aligned_cols=243 Identities=12% Similarity=0.050 Sum_probs=160.7
Q ss_pred HHHHHHHHHhHhhC----CCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHH
Q 002100 536 KEKMMDLNTATELD----PTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVR 610 (967)
Q Consensus 536 ~~A~~~~~~al~l~----P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~ 610 (967)
++|+..|+++++.. |.++.+++.+|.++...|++++|+..|++++..+| ++.++..+|.++...|++++|+..|+
T Consensus 22 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 101 (275)
T 1xnf_A 22 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 101 (275)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77777777777763 44566777777777777777777777777777777 67777777777777777777777777
Q ss_pred HHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 002100 611 ALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLR 690 (967)
Q Consensus 611 ~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~ 690 (967)
++++++|++..++ ..++.++...+++++| +..+.++++.+|.+.......+.. ..
T Consensus 102 ~al~~~~~~~~~~------~~la~~~~~~g~~~~A------------------~~~~~~a~~~~~~~~~~~~~~~~~-~~ 156 (275)
T 1xnf_A 102 SVLELDPTYNYAH------LNRGIALYYGGRDKLA------------------QDDLLAFYQDDPNDPFRSLWLYLA-EQ 156 (275)
T ss_dssp HHHHHCTTCTHHH------HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHH-HH
T ss_pred HHHhcCccccHHH------HHHHHHHHHhccHHHH------------------HHHHHHHHHhCCCChHHHHHHHHH-HH
Confidence 7777777777666 5667777777777777 677777777777766555444433 55
Q ss_pred hcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHH
Q 002100 691 LNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQ 770 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~ 770 (967)
.|++++|+..+++++...|.+...+. ++.++...++.++|+..+++++...|...
T Consensus 157 ~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------------ 211 (275)
T 1xnf_A 157 KLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLA------------------------ 211 (275)
T ss_dssp HHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH------------------------
T ss_pred hcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhccccccc------------------------
Confidence 57777777777777777666554433 55556666666777777777766555221
Q ss_pred HHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 002100 771 LLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEM 841 (967)
Q Consensus 771 ~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~ 841 (967)
+....++..+|.+|...|++++|+..|+++++.+|.. +...+.++...|++++|++.+
T Consensus 212 ------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 212 ------------EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT-CHHHHHHHHHHHHHHHC----
T ss_pred ------------ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh-HHHHHHHHHHHHHHHhhHHHH
Confidence 0112566677777777777777777777777755433 222355666667777666665
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.82 E-value=1.7e-19 Score=210.02 Aligned_cols=212 Identities=8% Similarity=-0.005 Sum_probs=201.2
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcH-HHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKL-AAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALL 613 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al 613 (967)
++++..++++....|+++.+++.+|.++...|++ ++|++.|+++++++| ++.++..+|.+|..+|++++|+..|++++
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999 999999999999999 89999999999999999999999999999
Q ss_pred HhCCCchHHhhhhhhhhhHhhhHHHh---------hchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHH
Q 002100 614 TLDPSYMMFYGQLHGDNLVETLQPLV---------QQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQ 684 (967)
Q Consensus 614 ~l~p~~~~~~~~~~~~~~~~~l~~~~---------~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~ 684 (967)
+++|+ ..++ ..++.++... +++++| +..++++++.+|.++.+++.+
T Consensus 165 ~~~p~-~~~~------~~lg~~~~~~~~~~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~~l 219 (474)
T 4abn_A 165 THCKN-KVSL------QNLSMVLRQLQTDSGDEHSRHVMDS------------------VRQAKLAVQMDVLDGRSWYIL 219 (474)
T ss_dssp TTCCC-HHHH------HHHHHHHTTCCCSCHHHHHHHHHHH------------------HHHHHHHHHHCTTCHHHHHHH
T ss_pred hhCCC-HHHH------HHHHHHHHHhccCChhhhhhhHHHH------------------HHHHHHHHHhCCCCHHHHHHH
Confidence 99999 5666 7788889888 999998 999999999999999999999
Q ss_pred HHHHHHh--------cCHHHHHHHHHHHHhcCC---chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Q 002100 685 SLLLLRL--------NSQKAAMRSLRLARNYST---SEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAY 753 (967)
Q Consensus 685 g~~~~~~--------g~~~~A~~~l~~al~~~p---~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 753 (967)
|.+|... |++++|+..|+++++.+| +++.+++++|.++...|++++|+..|+++++++|++.
T Consensus 220 g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~------- 292 (474)
T 4abn_A 220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP------- 292 (474)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------
Confidence 9999999 999999999999999999 9999999999999999999999999999999999776
Q ss_pred HhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHH
Q 002100 754 ALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNA 812 (967)
Q Consensus 754 ~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~A 812 (967)
.++.+++.++...|++++|+..+.+.
T Consensus 293 ---------------------------------~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 293 ---------------------------------EPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78999999999999999999877554
No 69
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.82 E-value=1.1e-18 Score=184.45 Aligned_cols=214 Identities=14% Similarity=0.043 Sum_probs=186.9
Q ss_pred hcCCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Q 002100 672 ANDPGK-SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFL 750 (967)
Q Consensus 672 ~~~p~~-~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 750 (967)
+.+|.. +..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|...
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---- 105 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA---- 105 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH----
Confidence 345655 678899999999999999999999999999999999999999999999999999999999998888555
Q ss_pred HHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc--cCc--HHHHHHHHH
Q 002100 751 KAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN--IKH--TRAHQGLAR 826 (967)
Q Consensus 751 ~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~~~--~~a~~~la~ 826 (967)
.++..+|.++...|++++|+.+|+++++ ..+ ..++..+|.
T Consensus 106 ------------------------------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 106 ------------------------------------RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp ------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred ------------------------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 6888999999999999999999999988 433 348888999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHH
Q 002100 827 VYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELS 906 (967)
Q Consensus 827 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~ 906 (967)
++...|++++|+..++++++..| .+..++..+|.++...|++++|+..++
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~ 199 (252)
T 2ho1_A 150 VSLQMKKPAQAKEYFEKSLRLNR------------------------------NQPSVALEMADLLYKEREYVPARQYYD 199 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCS------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCc------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999888888887776555 456677889999999999999999999
Q ss_pred HHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 002100 907 RAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELY 955 (967)
Q Consensus 907 kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~ 955 (967)
++++..|+ ...+..++.++...|++++|...++++++++|+++.+..++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 200 LFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999988 45888899999999999999999999999999999887654
No 70
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.82 E-value=3.4e-22 Score=186.31 Aligned_cols=112 Identities=14% Similarity=0.232 Sum_probs=97.8
Q ss_pred cccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHc
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSR 317 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y 317 (967)
+..++...+.++++++.+|||+|+|+|++|+|||.|||++|+||++||.+++.|+ .+|.++ +++++++|+.+|+|+|
T Consensus 12 ~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~-~~v~~~~f~~lL~~iY 88 (124)
T 2ihc_A 12 HSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLP-EEVTVKGFEPLIQFAY 88 (124)
T ss_dssp HHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECC-TTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeec-CCcCHHHHHHHHHHhc
Confidence 3445556677888889999999999999999999999999999999999998774 578885 2499999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHH
Q 002100 318 TKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLA 353 (967)
Q Consensus 318 t~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~ 353 (967)
||++ .++.+++.+++.+|++|+++.|++.|+++|.
T Consensus 89 tg~~-~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 89 TAKL-ILSKENVDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp HSEE-EEETTTHHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred CCCc-ccCHHHHHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 9999 8999999999999999999999999998874
No 71
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.82 E-value=4.9e-22 Score=185.82 Aligned_cols=111 Identities=19% Similarity=0.245 Sum_probs=99.9
Q ss_pred cccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHc
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSR 317 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y 317 (967)
+...+...+.++++++.+|||+|+|+|++|+|||.|||++|+||++||.+++.| ...|.+++ ++++++|+.+|+|+|
T Consensus 15 ~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~-~~~~~~f~~~l~~iY 91 (125)
T 3ohu_A 15 HCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPE-EVTARGFGPLLQFAY 91 (125)
T ss_dssp HHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCT-TCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCC-CCCHHHHHHHHHhHc
Confidence 344555667778888999999999999999999999999999999999999887 66788863 499999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHH
Q 002100 318 TKMLDSFDPRLVLELLSFANRFCCEELKSACDSYL 352 (967)
Q Consensus 318 t~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l 352 (967)
||++ .++.+++.+++.+|++|+++.|++.|+++|
T Consensus 92 tg~~-~~~~~~v~~ll~~A~~l~i~~L~~~C~~~L 125 (125)
T 3ohu_A 92 TAKL-LLSRENIREVIRCAEFLRMHNLEDSCFSFL 125 (125)
T ss_dssp TSEE-EECTTTHHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred CCce-EECHHHHHHHHHHHHHhCCHHHHHHHHHhC
Confidence 9999 899999999999999999999999998754
No 72
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.82 E-value=2.9e-19 Score=187.50 Aligned_cols=167 Identities=17% Similarity=0.080 Sum_probs=83.6
Q ss_pred chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhh
Q 002100 553 SYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNL 631 (967)
Q Consensus 553 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 631 (967)
+..++.+|..+...|++++|+..|++++..+| +..++..+|.++...|++++|+..++++++.+|++..++ ..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~ 96 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAY------YG 96 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHH------HH
Confidence 45566677777777777777777777777777 667777777777777777777777777776666655554 34
Q ss_pred HhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch
Q 002100 632 VETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE 711 (967)
Q Consensus 632 ~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~ 711 (967)
++.++...+++++| +..+.++++.+|.++..+..+|.++...|++++|+..++++++..|++
T Consensus 97 la~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 158 (243)
T 2q7f_A 97 AGNVYVVKEMYKEA------------------KDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158 (243)
T ss_dssp HHHHHHHTTCHHHH------------------HHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhccHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 44445554455444 444555555555444444444555555555555555555555444444
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 712 HEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 712 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
..++..+|.++...|++++|+..++++++.+|
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 190 (243)
T 2q7f_A 159 TEARFQFGMCLANEGMLDEALSQFAAVTEQDP 190 (243)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 44444444444444444444444444444444
No 73
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.82 E-value=1.2e-21 Score=184.07 Aligned_cols=113 Identities=17% Similarity=0.164 Sum_probs=94.0
Q ss_pred cccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHc
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSR 317 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y 317 (967)
+...+...+.++++++.+|||+|+|+|++|+|||.||+++|+||++||.++ ...+|.|++ ++++++|+.+|+|+|
T Consensus 16 ~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~-~~~~~~f~~ll~~iY 90 (129)
T 3ga1_A 16 FGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPA-AVQPQSFQQILSFCY 90 (129)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCT-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECC-CCCHHHHHHHHHHHh
Confidence 344455666777888999999999999999999999999999999999876 567899961 399999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhC
Q 002100 318 TKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMV 356 (967)
Q Consensus 318 t~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~ 356 (967)
||++ .++.+++.+++.+|++|+++.|++.|+++|.+..
T Consensus 91 tg~~-~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~~ 128 (129)
T 3ga1_A 91 TGRL-SMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKVS 128 (129)
T ss_dssp HSEE-ECCTTTHHHHHHHHHHTTBTTSSCC---------
T ss_pred CCcc-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 9999 8999999999999999999999999999998754
No 74
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.82 E-value=3e-18 Score=177.05 Aligned_cols=213 Identities=11% Similarity=-0.012 Sum_probs=187.3
Q ss_pred cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Q 002100 673 NDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKA 752 (967)
Q Consensus 673 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 752 (967)
..|.++..++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++..+|+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------ 76 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA------ 76 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh------
Confidence 45777888999999999999999999999999999999999999999999999999999999999998888555
Q ss_pred HHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc-ccHHHHHHHHHHHhc--cCc--HHHHHHHHHH
Q 002100 753 YALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC-EKLDLAADCYMNALN--IKH--TRAHQGLARV 827 (967)
Q Consensus 753 ~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~-g~~~~A~~~~~~Al~--~~~--~~a~~~la~~ 827 (967)
.++..+|.++... |++++|+.+|+++++ ..+ ..++..+|.+
T Consensus 77 ----------------------------------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 122 (225)
T 2vq2_A 77 ----------------------------------EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC 122 (225)
T ss_dssp ----------------------------------HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHH
Confidence 6888899999999 999999999999998 333 4588899999
Q ss_pred HHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHH
Q 002100 828 YHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSR 907 (967)
Q Consensus 828 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~k 907 (967)
+...|++++|+..++++++..| .++.++..+|.++...|++++|+..+++
T Consensus 123 ~~~~~~~~~A~~~~~~~~~~~~------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRSLAAQP------------------------------QFPPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST------------------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC------------------------------CCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999988888887776655 4556778899999999999999999999
Q ss_pred HHhcCC-C-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 002100 908 AIAFKP-D-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELY 955 (967)
Q Consensus 908 al~~~p-~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~ 955 (967)
+++..| + ...+..++.++...|++++|...++.+++.+|+++.+..++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 173 YQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999998 6 45778888999999999999999999999999999887765
No 75
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.81 E-value=7.1e-19 Score=184.49 Aligned_cols=200 Identities=16% Similarity=0.119 Sum_probs=179.7
Q ss_pred CcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHH
Q 002100 520 TPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIA 598 (967)
Q Consensus 520 ~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~ 598 (967)
...|..+...+.| ++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+| +..++..+|.++..
T Consensus 27 ~~~a~~~~~~~~~---~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 27 GQQMGRGSEFGDY---EKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCH---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 3456677777766 9999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh
Q 002100 599 LEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS 678 (967)
Q Consensus 599 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~ 678 (967)
.|++++|+..++++++.+|++...+ ..++.++...+++++| +..+.++++.+|.++
T Consensus 104 ~~~~~~A~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~ 159 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAGMENGDLF------YMLGTVLVKLEQPKLA------------------LPYLQRAVELNENDT 159 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCCSHHHH------HHHHHHHHHTSCHHHH------------------HHHHHHHHHHCTTCH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHhccHHHH------------------HHHHHHHHHhCCccH
Confidence 9999999999999999999998888 7789999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
..+..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..++++++++|++.
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 160 EARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999776
No 76
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.80 E-value=5e-18 Score=179.42 Aligned_cols=209 Identities=13% Similarity=0.009 Sum_probs=154.6
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHH
Q 002100 586 PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLA 665 (967)
Q Consensus 586 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~ 665 (967)
+.++..+|.++...|++++|+..|+++++.+|++..++ ..++.++...+++++| +.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------~~la~~~~~~~~~~~A------------------~~ 92 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAH------AALAVVFQTEMEPKLA------------------DE 92 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCHHHH------------------HH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHH------HHHHHHHHHcCCHHHH------------------HH
Confidence 45556666666666666666666666666666655555 4555556666666665 56
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 666 VVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARN--YSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 666 ~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
.+.++++.+|.+..++..+|.++...|++++|+..++++++ ..|.+..++..+|.++...|++++|+..++++++..|
T Consensus 93 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (252)
T 2ho1_A 93 EYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR 172 (252)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 66666666666666677777788888888888888888888 7777888888888888888888888888888888777
Q ss_pred chHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC--cHHHH
Q 002100 744 SFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK--HTRAH 821 (967)
Q Consensus 744 ~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~ 821 (967)
.+. .++..+|.++...|++++|+.+|+++++.. ...++
T Consensus 173 ~~~----------------------------------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 212 (252)
T 2ho1_A 173 NQP----------------------------------------SVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSL 212 (252)
T ss_dssp CCH----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHH
T ss_pred ccH----------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 544 677888888888888888888888888743 44578
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHH
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKR 858 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 858 (967)
..++.++...|++++|...++++++..|++..+...+
T Consensus 213 ~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 213 LLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 8888888888888888888888888888877765543
No 77
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=2.9e-18 Score=187.90 Aligned_cols=248 Identities=10% Similarity=-0.007 Sum_probs=166.1
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHh-------cCcH-------HHHHHHHHHHhc-cCC-ChhHHHHHHHHHHHh
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVE-------ENKL-------AAAITEINRIIG-FKV-SPDCLELRAWISIAL 599 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p-~~~~~~~la~~~~~~ 599 (967)
++|+..|+++++.+|+++.+|+.+|..+.. .|++ ++|+..|++++. ++| +..++..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 566666666666666666666666666553 2443 555555555555 455 455555555555555
Q ss_pred cCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChH
Q 002100 600 EDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSL 679 (967)
Q Consensus 600 g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~ 679 (967)
|++++|...|+++++++ |.++.
T Consensus 113 ~~~~~A~~~~~~al~~~----------------------------------------------------------p~~~~ 134 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIE----------------------------------------------------------DIDPT 134 (308)
T ss_dssp TCHHHHHHHHHHHHTSS----------------------------------------------------------SSCTH
T ss_pred CCHHHHHHHHHHHHhcc----------------------------------------------------------ccCcc
Confidence 55555555555555544 44443
Q ss_pred -HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH-cCChHHHHHHHHHHHhcccchHHHHHHHHHhhh
Q 002100 680 -LRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYD-TGHREEALAKAEESISIQRSFEAFFLKAYALAD 757 (967)
Q Consensus 680 -~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~ 757 (967)
+|..+|.++.+.|++++|+..|+++++..|.....+...+.+... .|++++|+..|+++++.+|++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~----------- 203 (308)
T 2ond_A 135 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP----------- 203 (308)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH-----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----------
Confidence 555666667777778888888888888777777766655555433 6888888888888888888555
Q ss_pred cCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc---C---cHHHHHHHHHHHHHh
Q 002100 758 SSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI---K---HTRAHQGLARVYHLK 831 (967)
Q Consensus 758 ~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~---~---~~~a~~~la~~~~~~ 831 (967)
.+|.++|.++...|++++|+..|+++++. . ....|..++..+...
T Consensus 204 -----------------------------~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~ 254 (308)
T 2ond_A 204 -----------------------------EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254 (308)
T ss_dssp -----------------------------HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 67788888888888888888888888873 2 234788888888888
Q ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHH
Q 002100 832 NQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRA 889 (967)
Q Consensus 832 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la 889 (967)
|+++.|...++++++..|++...... ....+..+.+.++|+++..+..+|
T Consensus 255 g~~~~a~~~~~~a~~~~p~~~~~~~~--------~~~~~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 255 GDLASILKVEKRRFTAFREEYEGKET--------ALLVDRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp SCHHHHHHHHHHHHHHTTTTTSSCHH--------HHHHTTTCBTTBCSSCHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHcccccccchH--------HHHHHHHHhcccCCCCHHHHHhcC
Confidence 99999999999999888864322111 111222366778888888877766
No 78
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.80 E-value=1.4e-17 Score=188.34 Aligned_cols=243 Identities=11% Similarity=0.027 Sum_probs=199.8
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHhccC---C----ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchH-Hhhhh
Q 002100 555 PYKYRAILLVEENKLAAAITEINRIIGFK---V----SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMM-FYGQL 626 (967)
Q Consensus 555 ~~~~la~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~~~ 626 (967)
.++.+|..+...|++++|+..|++++.+. + ...++..+|.+|..+|++++|+..+++++++.+.... .....
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 45669999999999999999999999872 2 4679999999999999999999999999998655432 11112
Q ss_pred hhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh------HHHHHHHHHHHHhcCHHHHHHH
Q 002100 627 HGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS------LLRFRQSLLLLRLNSQKAAMRS 700 (967)
Q Consensus 627 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~------~~~~~~g~~~~~~g~~~~A~~~ 700 (967)
.....+|.++...++|++| +..+.++++..+... .++.++|.+|..+|++++|+..
T Consensus 185 ~~~~~lg~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 246 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDA------------------ISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPY 246 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHH------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2337889999999999999 888888887755433 5788999999999999999999
Q ss_pred HHHHHh-----cC-CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHH
Q 002100 701 LRLARN-----YS-TSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEE 774 (967)
Q Consensus 701 l~~al~-----~~-p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~ 774 (967)
|+++++ .+ |..+.++..+|.++..+|++++|+..+++++++.+...
T Consensus 247 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------- 298 (383)
T 3ulq_A 247 FKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG---------------------------- 298 (383)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----------------------------
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----------------------------
Confidence 999999 56 88889999999999999999999999999998765211
Q ss_pred HhcCCCCCCchHHHHHHhHHHHHhccc---HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002100 775 ALRCPSDGLRKGQALNNLGSVYVDCEK---LDLAADCYMNALNI-KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 775 ~~~~~~~~~~~~~a~~~lg~~~~~~g~---~~~A~~~~~~Al~~-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 850 (967)
.+.....+..+|.+|...|+ +++|+..+++.-.. ....++..+|.+|..+|++++|...|+++++....
T Consensus 299 -------~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 299 -------DVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp -------CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred -------CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 00111336779999999999 88888888887332 22338889999999999999999999999987653
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.80 E-value=4.5e-18 Score=177.24 Aligned_cols=212 Identities=10% Similarity=0.034 Sum_probs=140.3
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Q 002100 675 PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYST-SEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAY 753 (967)
Q Consensus 675 p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 753 (967)
+.++..++.+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++++|++.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------- 76 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA------- 76 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH-------
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH-------
Confidence 34456666666666666666666666666666666 5566666666666666666666666666666666444
Q ss_pred HhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH---------HHHHHH
Q 002100 754 ALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT---------RAHQGL 824 (967)
Q Consensus 754 ~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~---------~a~~~l 824 (967)
.++..+|.+|..+|++++|+..|+++++..|. .++..+
T Consensus 77 ---------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 123 (228)
T 4i17_A 77 ---------------------------------NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKE 123 (228)
T ss_dssp ---------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 55666666666666666666666666653322 224444
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCC--CchHHHHHHHHHHhCCCHHHHH
Q 002100 825 ARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPM--RTYPYRYRAAVLMDDHKEAEAI 902 (967)
Q Consensus 825 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~--~~~~~~~la~~~~~~g~~~eAi 902 (967)
|.++..+ +++++|+..|+++++++|+ ++.++.++|.+|...| .
T Consensus 124 g~~~~~~------------------------------~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-----~ 168 (228)
T 4i17_A 124 GQKFQQA------------------------------GNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG-----A 168 (228)
T ss_dssp HHHHHHT------------------------------TCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-----H
T ss_pred hHHHHHh------------------------------ccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-----H
Confidence 4444444 4555555556666666777 7778888888886544 4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 903 AELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 903 ~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
..++++..+.+... ....+......+.+++|+..|+++++++|++++++.++.+++..+
T Consensus 169 ~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~~ 227 (228)
T 4i17_A 169 DVLRKATPLASSNK-EKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI 227 (228)
T ss_dssp HHHHHHGGGTTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence 45667777765532 223455566778899999999999999999999999999987654
No 80
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.80 E-value=1.7e-18 Score=195.84 Aligned_cols=309 Identities=9% Similarity=-0.033 Sum_probs=213.4
Q ss_pred HHHHHhcCcHHHHHHHHHHHhccCC----ChhHH--HH--HHHHHHHhcCHHHHH-----------HHHHHHHHhCCCch
Q 002100 560 AILLVEENKLAAAITEINRIIGFKV----SPDCL--EL--RAWISIALEDYDGAL-----------RDVRALLTLDPSYM 620 (967)
Q Consensus 560 a~~~~~~g~~~~A~~~~~~al~~~p----~~~~~--~~--la~~~~~~g~~~~A~-----------~~~~~al~l~p~~~ 620 (967)
....+..+++++|...++++...-+ +.+.+ +. ..+.....++++.+. +.++++- ..|...
T Consensus 19 w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~-~~~~~~ 97 (383)
T 3ulq_A 19 WYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEID-KKQARL 97 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHH-HHTHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHH-hcCCCc
Confidence 3445667777777777776644321 22222 21 222333344444444 4444432 222222
Q ss_pred HHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc---C---CCChHHHHHHHHHHHHhcCH
Q 002100 621 MFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN---D---PGKSLLRFRQSLLLLRLNSQ 694 (967)
Q Consensus 621 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~---~---p~~~~~~~~~g~~~~~~g~~ 694 (967)
......-..+..|..+...++|++| +..+.++++. . +..+.+++.+|.+|...|++
T Consensus 98 ~~~l~~~~~~~~g~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~ 159 (383)
T 3ulq_A 98 TGLLEYYFNFFRGMYELDQREYLSA------------------IKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQT 159 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHHHHHhcCHHHH------------------HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 2221100113467777777777777 7777777765 2 22456788999999999999
Q ss_pred HHHHHHHHHHHhcCC-------chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHH
Q 002100 695 KAAMRSLRLARNYST-------SEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAY 767 (967)
Q Consensus 695 ~~A~~~l~~al~~~p-------~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~ 767 (967)
++|+..++++++..+ ....++..+|.++..+|++++|+..|++++++.+...
T Consensus 160 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------- 218 (383)
T 3ulq_A 160 YFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--------------------- 218 (383)
T ss_dssp HHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC---------------------
Confidence 999999999998743 3356888999999999999999999999997766221
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc-----cC-c--HHHHHHHHHHHHHhCCHHHHHH
Q 002100 768 VIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN-----IK-H--TRAHQGLARVYHLKNQRKAAYD 839 (967)
Q Consensus 768 a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-----~~-~--~~a~~~la~~~~~~g~~~~A~~ 839 (967)
+.+..+.++.++|.+|..+|++++|+.+|+++++ .+ + ..++.++|.++..+|++++|+.
T Consensus 219 -------------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 285 (383)
T 3ulq_A 219 -------------QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHE 285 (383)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHH
Confidence 1123346889999999999999999999999998 23 2 3489999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCC---HHHHHHHHHHHHhcCCC-h
Q 002100 840 EMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHK---EAEAIAELSRAIAFKPD-L 915 (967)
Q Consensus 840 ~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~---~~eAi~~~~kal~~~p~-~ 915 (967)
.++++++..+.. -+|.....+..+|.++...|+ +++|+..+++. ...|. .
T Consensus 286 ~~~~al~~~~~~-------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~ 339 (383)
T 3ulq_A 286 YHSKGMAYSQKA-------------------------GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLE 339 (383)
T ss_dssp HHHHHHHHHHHH-------------------------TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHH
T ss_pred HHHHHHHHHHHc-------------------------CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHH
Confidence 999998875521 012222235568889999998 88888888776 22222 3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002100 916 QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPN 947 (967)
Q Consensus 916 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~ 947 (967)
.++..+|.+|..+|++++|+..|++++++...
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 47888999999999999999999999987543
No 81
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.80 E-value=1.7e-17 Score=171.45 Aligned_cols=211 Identities=15% Similarity=0.050 Sum_probs=136.1
Q ss_pred CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhh
Q 002100 549 DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLH 627 (967)
Q Consensus 549 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 627 (967)
+|+++.+++.+|.++...|++++|+..|++++..+| ++.++..+|.++...|++++|+..+++++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------- 72 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK----------- 72 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----------
Confidence 344455555555555555555555555555555555 45555555555555555555555555555444
Q ss_pred hhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHh-cCHHHHHHHHHHHHh
Q 002100 628 GDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRL-NSQKAAMRSLRLARN 706 (967)
Q Consensus 628 ~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~-g~~~~A~~~l~~al~ 706 (967)
|.+...+..+|.++... |++++|+..++++++
T Consensus 73 -----------------------------------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 73 -----------------------------------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp -----------------------------------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred -----------------------------------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 44444555566666666 777777777777776
Q ss_pred --cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCc
Q 002100 707 --YSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLR 784 (967)
Q Consensus 707 --~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~ 784 (967)
..|.+..++..+|.++...|++++|+..++++++..|++.
T Consensus 106 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------------------------------------- 147 (225)
T 2vq2_A 106 DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP-------------------------------------- 147 (225)
T ss_dssp STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--------------------------------------
T ss_pred CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc--------------------------------------
Confidence 5566667777777777777777777777777777666444
Q ss_pred hHHHHHHhHHHHHhcccHHHHHHHHHHHhc--c-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHH
Q 002100 785 KGQALNNLGSVYVDCEKLDLAADCYMNALN--I-KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEK 857 (967)
Q Consensus 785 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 857 (967)
.++..+|.++...|++++|+..|+++++ + ....++..++.++...|++++|...++.+++..|+++.+...
T Consensus 148 --~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 148 --PAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred --hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5667777777777777777777777776 3 444566677777777888888888887777777777666544
No 82
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.80 E-value=2.1e-20 Score=171.93 Aligned_cols=92 Identities=16% Similarity=0.148 Sum_probs=84.4
Q ss_pred CCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHHHHH
Q 002100 251 TSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLVL 330 (967)
Q Consensus 251 ~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ 330 (967)
.++.+|||+|+|+|++|+|||+|||++|+||++ ....|.+++ +++++|+.+|+|+|||++ .++.+++.
T Consensus 26 ~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~~--v~~~~f~~ll~fiYtg~~-~i~~~~v~ 93 (119)
T 3m5b_A 26 LRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGEG--ISPSTFAQLLNFVYGESV-ELQPGELR 93 (119)
T ss_dssp HTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCSS--CCHHHHHHHHHHHTTCCE-EECGGGHH
T ss_pred hcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeCC--CCHHHHHHHHHHHcCCCc-CcCHHHHH
Confidence 457899999999999999999999999999984 346788976 999999999999999999 89999999
Q ss_pred HHHHHhchhChHHHHHHHHHHHHh
Q 002100 331 ELLSFANRFCCEELKSACDSYLAS 354 (967)
Q Consensus 331 ~ll~~A~~~~~~~l~~~c~~~l~~ 354 (967)
+++.+|++|+++.|++.|++++.+
T Consensus 94 ~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 94 PLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhh
Confidence 999999999999999999998865
No 83
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.79 E-value=1.1e-18 Score=203.05 Aligned_cols=214 Identities=13% Similarity=0.118 Sum_probs=200.1
Q ss_pred cCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchh
Q 002100 566 ENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDY-DGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWS 643 (967)
Q Consensus 566 ~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~-~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~ 643 (967)
.+++++|+..++++....| +..+++.+|.++...|++ ++|+..|+++++++|++..++ ..++.++...++++
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~------~~lg~~~~~~g~~~ 154 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAW------NQLGEVYWKKGDVT 154 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHH------HHHHHHHHHcCCHH
Confidence 3457888999999999999 899999999999999999 999999999999999999999 88899999999999
Q ss_pred hHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHh---------cCHHHHHHHHHHHHhcCCchhHH
Q 002100 644 QADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRL---------NSQKAAMRSLRLARNYSTSEHEK 714 (967)
Q Consensus 644 ~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~---------g~~~~A~~~l~~al~~~p~~~~a 714 (967)
+| +..|+++++.+|+ ..++..+|.++... |++++|+..|+++++.+|+++.+
T Consensus 155 ~A------------------~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 215 (474)
T 4abn_A 155 SA------------------HTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215 (474)
T ss_dssp HH------------------HHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HH------------------HHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 99 9999999999999 79999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHHHhccc---chHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCC
Q 002100 715 LVYEGWILYDT--------GHREEALAKAEESISIQR---SFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGL 783 (967)
Q Consensus 715 ~~~lg~~~~~~--------g~~~eA~~~~~~al~~~p---~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~ 783 (967)
++.+|.++... |++++|+..|+++++++| ++.
T Consensus 216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------------------------------------- 258 (474)
T 4abn_A 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNP------------------------------------- 258 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCH-------------------------------------
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCH-------------------------------------
Confidence 99999999999 999999999999999999 555
Q ss_pred chHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002100 784 RKGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRKAAYDEMTKL 844 (967)
Q Consensus 784 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~a 844 (967)
.+++++|.+|...|++++|+.+|+++++. +...++..++.++..+|++++|++.+.+.
T Consensus 259 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 259 ---DLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 79999999999999999999999999984 44568999999999999999999877544
No 84
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.79 E-value=1e-19 Score=167.05 Aligned_cols=101 Identities=12% Similarity=0.111 Sum_probs=91.2
Q ss_pred ccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcC
Q 002100 239 RDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
...+...+.++++++.+|||+|+|+|++|+|||.|||++|+||++||.++ ..+|.+++ +++++|+.+|+|+||
T Consensus 15 ~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~~--~~~~~f~~~l~~~Yt 87 (116)
T 3fkc_A 15 SGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSF--IRAEIFAEILNYIYS 87 (116)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECS--SCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCC--CCHHHHHHHHHhhcC
Confidence 34455666777888999999999999999999999999999999999875 56899976 999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhchhChHHHHH
Q 002100 319 KMLDSFDPRLVLELLSFANRFCCEELKS 346 (967)
Q Consensus 319 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~ 346 (967)
|+++.++.+++.+++.+|++|+++.|++
T Consensus 88 g~~~~~~~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 88 SKIVRVRSDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp SCCCSCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred CCcCCCCHHHHHHHHHHHHHhCccccCc
Confidence 9996699999999999999999999974
No 85
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=1.1e-17 Score=183.30 Aligned_cols=217 Identities=13% Similarity=0.024 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHh-cccchHHHHHHHHHhhhcC
Q 002100 695 KAAMRSLRLARNYSTSEHEKLVYEGWILYD-------TGHR-------EEALAKAEESIS-IQRSFEAFFLKAYALADSS 759 (967)
Q Consensus 695 ~~A~~~l~~al~~~p~~~~a~~~lg~~~~~-------~g~~-------~eA~~~~~~al~-~~p~~~~~~~~~~~la~~~ 759 (967)
++|+..|++++..+|+++++|+.+|..+.. .|++ ++|+..|+++++ ++|++.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~------------- 99 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM------------- 99 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH-------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccH-------------
Confidence 688899999999999999999999988864 5886 999999999999 688666
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc--HH-HHHHHHHHHHHhCCHHH
Q 002100 760 LNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH--TR-AHQGLARVYHLKNQRKA 836 (967)
Q Consensus 760 ~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--~~-a~~~la~~~~~~g~~~~ 836 (967)
.+|.++|.++...|++++|+..|+++++..| .. +|..+|.++...|++++
T Consensus 100 ---------------------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 152 (308)
T 2ond_A 100 ---------------------------LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS 152 (308)
T ss_dssp ---------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHH
T ss_pred ---------------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHH
Confidence 7899999999999999999999999999554 44 89999999999999999
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHc-----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 002100 837 AYDEMTKLIEKARNNASAYEKRSE-----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAF 911 (967)
Q Consensus 837 A~~~~~~al~~~p~~~~~~~~~~~-----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~ 911 (967)
|...|+++++..|....+|...+. .|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.
T Consensus 153 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 153 GRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999998888877663 389999999999999999999999999999999999999999999999996
Q ss_pred ---CCC--hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhH
Q 002100 912 ---KPD--LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDT 951 (967)
Q Consensus 912 ---~p~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 951 (967)
.|+ ..++...+.++...|++++|...++++++.+|++.+.
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 443 3488888999999999999999999999999986654
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.78 E-value=2.7e-17 Score=171.25 Aligned_cols=81 Identities=9% Similarity=0.047 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchh-------HHHHHHHHHHHHcCChHHHHHHHH
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEH-------EKLVYEGWILYDTGHREEALAKAE 736 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~-------~a~~~lg~~~~~~g~~~eA~~~~~ 736 (967)
+..+.++++.+|.+..+++.+|.++..+|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..|+
T Consensus 62 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 141 (228)
T 4i17_A 62 ADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYK 141 (228)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHH
Confidence 3333444444444444444445555555555555555555555555544 345556666666666666666666
Q ss_pred HHHhcccc
Q 002100 737 ESISIQRS 744 (967)
Q Consensus 737 ~al~~~p~ 744 (967)
++++++|+
T Consensus 142 ~al~~~p~ 149 (228)
T 4i17_A 142 HATDVTSK 149 (228)
T ss_dssp HHTTSSCH
T ss_pred HHHhcCCC
Confidence 66666664
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.77 E-value=2.6e-18 Score=207.80 Aligned_cols=174 Identities=12% Similarity=0.035 Sum_probs=167.5
Q ss_pred hCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhh
Q 002100 548 LDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQL 626 (967)
Q Consensus 548 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 626 (967)
-.|+++.+|.++|.++.++|++++|++.|+++++++| +..++..+|.+|..+|++++|+..|+++++++|++..++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~--- 80 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY--- 80 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH---
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---
Confidence 4689999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred hhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002100 627 HGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARN 706 (967)
Q Consensus 627 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~ 706 (967)
.++|.++...+++++| +..|+++++++|++..+++++|.+|..+|++++|+..|+++++
T Consensus 81 ---~nLg~~l~~~g~~~~A------------------~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 81 ---SNMGNTLKEMQDVQGA------------------LQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp ---HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8899999999999999 9999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccch
Q 002100 707 YSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSF 745 (967)
Q Consensus 707 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 745 (967)
++|+++.++.++|.++..+|++++|++.+++++++.|+.
T Consensus 140 l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 140 LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred hCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 999999999999999999999999999999999887743
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.75 E-value=3.3e-17 Score=174.66 Aligned_cols=180 Identities=12% Similarity=0.026 Sum_probs=161.6
Q ss_pred HhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchH
Q 002100 546 TELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S---PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMM 621 (967)
Q Consensus 546 l~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 621 (967)
.+++|+++..++.+|..++..|++++|+..|++++...| + +.+++.+|.+|..+|++++|+..|+++++.+|+++.
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 456889999999999999999999999999999999999 6 889999999999999999999999999999987654
Q ss_pred HhhhhhhhhhHhhhHHH--------hhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH------------
Q 002100 622 FYGQLHGDNLVETLQPL--------VQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR------------ 681 (967)
Q Consensus 622 ~~~~~~~~~~~~~l~~~--------~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~------------ 681 (967)
... +.+.++.++.. .+++++| +..|+++++.+|+++...
T Consensus 88 ~~~---a~~~lg~~~~~~~~~~~~~~~~~~~A------------------~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~ 146 (261)
T 3qky_A 88 VPQ---AEYERAMCYYKLSPPYELDQTDTRKA------------------IEAFQLFIDRYPNHELVDDATQKIRELRAK 146 (261)
T ss_dssp HHH---HHHHHHHHHHHHCCCTTSCCHHHHHH------------------HHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHHHhcccccccchhHHHH------------------HHHHHHHHHHCcCchhHHHHHHHHHHHHHH
Confidence 321 12788999988 8999999 999999999999987766
Q ss_pred -----HHHHHHHHHhcCHHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHc----------CChHHHHHHHHHHHhccc
Q 002100 682 -----FRQSLLLLRLNSQKAAMRSLRLARNYSTS---EHEKLVYEGWILYDT----------GHREEALAKAEESISIQR 743 (967)
Q Consensus 682 -----~~~g~~~~~~g~~~~A~~~l~~al~~~p~---~~~a~~~lg~~~~~~----------g~~~eA~~~~~~al~~~p 743 (967)
+.+|.+|...|++++|+..|+++++..|+ .+++++.+|.++..+ |++++|+..|+++++.+|
T Consensus 147 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 147 LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 88899999999999999999999999998 677999999999977 899999999999999999
Q ss_pred chH
Q 002100 744 SFE 746 (967)
Q Consensus 744 ~~~ 746 (967)
++.
T Consensus 227 ~~~ 229 (261)
T 3qky_A 227 DSP 229 (261)
T ss_dssp TCT
T ss_pred CCh
Confidence 664
No 89
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=182.21 Aligned_cols=254 Identities=11% Similarity=0.038 Sum_probs=193.9
Q ss_pred hCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhcc--------CC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--
Q 002100 548 LDPTLSYPYKYRAILLVEENKLAAAITEINRIIGF--------KV-SPDCLELRAWISIALEDYDGALRDVRALLTLD-- 616 (967)
Q Consensus 548 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-- 616 (967)
.+|....++..+|.++...|++++|+..|++++++ .| ...++..+|.+|...|++++|+..+++++.+.
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35667788999999999999999999999999985 45 68899999999999999999999999999883
Q ss_pred ------CCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcC--------CCChHHHH
Q 002100 617 ------PSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAND--------PGKSLLRF 682 (967)
Q Consensus 617 ------p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~--------p~~~~~~~ 682 (967)
|....++ ..++.++...+++++| +..+.++++.. |....++.
T Consensus 102 ~~~~~~~~~~~~~------~~l~~~~~~~g~~~~A------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 102 TLGKDHPAVAATL------NNLAVLYGKRGKYKEA------------------EPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp HHCTTCHHHHHHH------HHHHHHHHTTTCHHHH------------------HHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhCCCChHHHHHH------HHHHHHHHHcCcHHHH------------------HHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 3334444 7789999999999999 77787777663 55667889
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 683 RQSLLLLRLNSQKAAMRSLRLARNY--------STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 683 ~~g~~~~~~g~~~~A~~~l~~al~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
.+|.++...|++++|+..|+++++. .|....++..+|.++...|++++|+..+++++++.+... +
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~- 230 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE------F- 230 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH------H-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc------C-
Confidence 9999999999999999999999998 777888999999999999999999999999998766321 0
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH--HHHHHHHHHHHHhC
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT--RAHQGLARVYHLKN 832 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~--~a~~~la~~~~~~g 832 (967)
... .+ ...........+..++..+...+.+.+|+..+++++...+. .++..+|.+|..+|
T Consensus 231 -~~~--~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g 292 (311)
T 3nf1_A 231 -GSV--DD---------------ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQG 292 (311)
T ss_dssp -C-----------------------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHT
T ss_pred -CCC--Cc---------------chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCC
Confidence 000 00 00000112245666677777888888899999998875544 48999999999999
Q ss_pred CHHHHHHHHHHHHHHccC
Q 002100 833 QRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 833 ~~~~A~~~~~~al~~~p~ 850 (967)
++++|++.|++++++.|+
T Consensus 293 ~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 293 KFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHhhc
Confidence 999999999999998874
No 90
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.75 E-value=1.5e-17 Score=201.18 Aligned_cols=171 Identities=15% Similarity=0.081 Sum_probs=163.8
Q ss_pred cCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccc
Q 002100 582 FKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDD 660 (967)
Q Consensus 582 ~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~ 660 (967)
..| +++++.++|.+|..+|++++|+..|+++++++|++..++ .++|.++...+++++|
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~------~nLg~~l~~~g~~~eA--------------- 62 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH------SNLASVLQQQGKLQEA--------------- 62 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHH------HHHHHHHHHTTCHHHH---------------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHcCCHHHH---------------
Confidence 457 789999999999999999999999999999999999999 8899999999999999
Q ss_pred cchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 661 IGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESIS 740 (967)
Q Consensus 661 ~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 740 (967)
+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++.+++.++|.+|..+|++++|+..|+++++
T Consensus 63 ---~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 63 ---LMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp ---HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC
Q 002100 741 IQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK 816 (967)
Q Consensus 741 ~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~ 816 (967)
++|++. .++.++|.++..+|++++|++.|++++++.
T Consensus 140 l~P~~~----------------------------------------~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 140 LKPDFP----------------------------------------DAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp HCSCCH----------------------------------------HHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred hCCCCh----------------------------------------HHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 999777 899999999999999999999999998743
No 91
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.74 E-value=2.4e-16 Score=170.02 Aligned_cols=223 Identities=13% Similarity=0.065 Sum_probs=186.5
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcC--cHHHHHHHHHHHhccCC-ChhHHHHHHHHH----HHh---cCHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEEN--KLAAAITEINRIIGFKV-SPDCLELRAWIS----IAL---EDYDGA 605 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p-~~~~~~~la~~~----~~~---g~~~~A 605 (967)
++|+..+.++|.++|++..+|..++.++...+ +++++++.+++++..+| +..++..++.+. ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 78999999999999999999999999999999 99999999999999999 999999999999 777 789999
Q ss_pred HHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchh--hHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHH
Q 002100 606 LRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWS--QADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFR 683 (967)
Q Consensus 606 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~--~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~ 683 (967)
+..+.++++.+|.+..++ ..++.+....+.|+ ++ +..+.++++.+|.+..+|..
T Consensus 130 L~~~~~~l~~~pkny~aW------~~R~~vl~~l~~~~~~~E------------------L~~~~~~i~~d~~N~sAW~~ 185 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVW------SYRKWLVDTFDLHNDAKE------------------LSFVDKVIDTDLKNNSAWSH 185 (306)
T ss_dssp HHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCTTCHHH------------------HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHH------HHHHHHHHHhcccChHHH------------------HHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999 67788888888887 66 99999999999999999999
Q ss_pred HHHHHHHhcC------HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHH-HHHHHHHhcccchHHHHHHHHHhh
Q 002100 684 QSLLLLRLNS------QKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEAL-AKAEESISIQRSFEAFFLKAYALA 756 (967)
Q Consensus 684 ~g~~~~~~g~------~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~-~~~~~al~~~p~~~~~~~~~~~la 756 (967)
++.++...+. +++++..+++++..+|++..+|.+++.++...|+..+++ ..++++++++.
T Consensus 186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~------------- 252 (306)
T 3dra_A 186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK------------- 252 (306)
T ss_dssp HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG-------------
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC-------------
Confidence 9999988887 899999999999999999999999999998888855533 45555554430
Q ss_pred hcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc-cCcHH
Q 002100 757 DSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN-IKHTR 819 (967)
Q Consensus 757 ~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-~~~~~ 819 (967)
..+....++..++.+|.+.|+.++|+++|+.+.+ .+|.+
T Consensus 253 ------------------------~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir 292 (306)
T 3dra_A 253 ------------------------DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIR 292 (306)
T ss_dssp ------------------------TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred ------------------------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHH
Confidence 0112225667777777777777777777777664 45544
No 92
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.74 E-value=2.6e-16 Score=177.66 Aligned_cols=232 Identities=12% Similarity=0.034 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Q 002100 680 LRFRQSLLLLRLNSQKAAMRSLRLARNYST------SEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAY 753 (967)
Q Consensus 680 ~~~~~g~~~~~~g~~~~A~~~l~~al~~~p------~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 753 (967)
.++.+|..+...|++++|+..|+++++..+ ..+.+++.+|.++...|++++|+..+++++++.+...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~------- 175 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP------- 175 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-------
Confidence 567889999999999999999999998742 3567899999999999999999999999998766322
Q ss_pred HhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc----Cc----HHHHHHHH
Q 002100 754 ALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI----KH----TRAHQGLA 825 (967)
Q Consensus 754 ~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~----~~----~~a~~~la 825 (967)
...+..+.+++++|.+|...|++++|+++|+++++. +. ..++.++|
T Consensus 176 --------------------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 229 (378)
T 3q15_A 176 --------------------------LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIA 229 (378)
T ss_dssp --------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------------------CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 001123478999999999999999999999999983 22 13889999
Q ss_pred HHHHHhCCHHHHHHHHHHHHH-----HccCCHHHHHHHHc----cCChHHHHHHHHHhhccCC-----CCchHHHHHHHH
Q 002100 826 RVYHLKNQRKAAYDEMTKLIE-----KARNNASAYEKRSE----YCDRDMAKSDLSMATQLDP-----MRTYPYRYRAAV 891 (967)
Q Consensus 826 ~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p-----~~~~~~~~la~~ 891 (967)
.+|..+|++++|+..++++++ .+|..+.++..+|. .|++++|+..+++++++.+ .....+..++.+
T Consensus 230 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~l 309 (378)
T 3q15_A 230 NSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAV 309 (378)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999 77777888888884 3999999999999999854 334456678888
Q ss_pred HHhCCC---HHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 892 LMDDHK---EAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 892 ~~~~g~---~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
+...++ +.+|+..+++. ...|. ...+..+|.+|..+|++++|+..|+++++..
T Consensus 310 y~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 310 YKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 888898 88888888873 22222 3477889999999999999999999998754
No 93
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.74 E-value=4.5e-16 Score=175.67 Aligned_cols=243 Identities=11% Similarity=0.035 Sum_probs=198.5
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-------ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchH-Hhhh
Q 002100 554 YPYKYRAILLVEENKLAAAITEINRIIGFKV-------SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMM-FYGQ 625 (967)
Q Consensus 554 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~~ 625 (967)
..++.+|..+...|++++|+..|++++.+.+ ...++..+|.+|..+|++++|+..+++++++.+.... ....
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 3578899999999999999999999998743 3568999999999999999999999999998654332 1111
Q ss_pred hhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCC------CChHHHHHHHHHHHHhcCHHHHHH
Q 002100 626 LHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDP------GKSLLRFRQSLLLLRLNSQKAAMR 699 (967)
Q Consensus 626 ~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p------~~~~~~~~~g~~~~~~g~~~~A~~ 699 (967)
......+|.++...++|++| +..+.++++..+ ....++.++|.+|..+|++++|+.
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~ 243 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKA------------------LPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE 243 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHH------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 22337889999999999999 788888877532 234578899999999999999999
Q ss_pred HHHHHHh-----cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHH
Q 002100 700 SLRLARN-----YSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEE 774 (967)
Q Consensus 700 ~l~~al~-----~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~ 774 (967)
.|+++++ .+|..+.++..+|.++..+|++++|+..+++++++.+...
T Consensus 244 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------- 295 (378)
T 3q15_A 244 HFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS---------------------------- 295 (378)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC----------------------------
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----------------------------
Confidence 9999999 8888899999999999999999999999999998765221
Q ss_pred HhcCCCCCCchHHHHHHhHHHHHhccc---HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 002100 775 ALRCPSDGLRKGQALNNLGSVYVDCEK---LDLAADCYMNALNI-KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKAR 849 (967)
Q Consensus 775 ~~~~~~~~~~~~~a~~~lg~~~~~~g~---~~~A~~~~~~Al~~-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 849 (967)
.+.....+..++.+|...++ +.+|+..+++.-.. ....++..+|.+|..+|++++|...|+++++...
T Consensus 296 -------~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 296 -------HKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp -------CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 11222356778888888888 88899888874332 2233788899999999999999999999998654
No 94
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=9.8e-18 Score=182.65 Aligned_cols=242 Identities=14% Similarity=0.032 Sum_probs=182.5
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccch
Q 002100 674 DPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNY--------STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSF 745 (967)
Q Consensus 674 ~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 745 (967)
+|.....+..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..+++++.+....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4667788999999999999999999999999984 67788899999999999999999999999999764211
Q ss_pred HHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC--------c
Q 002100 746 EAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK--------H 817 (967)
Q Consensus 746 ~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~--------~ 817 (967)
. ..+.+....++.++|.+|...|++++|+.+|+++++.. +
T Consensus 103 ~--------------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 103 L--------------------------------GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp H--------------------------------CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred h--------------------------------CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 0 00112334788899999999999999999999998742 2
Q ss_pred H--HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------ccCCHHHHHHHHcc----CChHHHHHHHHHhhcc------
Q 002100 818 T--RAHQGLARVYHLKNQRKAAYDEMTKLIEK--------ARNNASAYEKRSEY----CDRDMAKSDLSMATQL------ 877 (967)
Q Consensus 818 ~--~a~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l------ 877 (967)
. .++..+|.++...|++++|+..++++++. .|....++..++.. |++++|+..|+++++.
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 2 37888999999999999999999999988 56666677777742 8999999999998864
Q ss_pred ---CCCCchHHHHHHH------HHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002100 878 ---DPMRTYPYRYRAA------VLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPN 947 (967)
Q Consensus 878 ---~p~~~~~~~~la~------~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~ 947 (967)
++.....+...+. .+...+.+.+|+..+.+++...|. ..++..+|.+|..+|++++|+..|++++++.|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 3444444444443 344446677777788888877777 458999999999999999999999999999875
No 95
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.74 E-value=8.5e-17 Score=174.65 Aligned_cols=219 Identities=11% Similarity=-0.006 Sum_probs=173.8
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHH
Q 002100 693 SQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLL 772 (967)
Q Consensus 693 ~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~l 772 (967)
++++|+..|+++ |.++...|++++|+..|++++++.+...
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------- 71 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAG-------------------------- 71 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT--------------------------
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC--------------------------
Confidence 588999988887 6678889999999999999997765211
Q ss_pred HHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc--------HHHHHHHHHHHHHh-CCHHHHHHHHHH
Q 002100 773 EEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH--------TRAHQGLARVYHLK-NQRKAAYDEMTK 843 (967)
Q Consensus 773 e~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--------~~a~~~la~~~~~~-g~~~~A~~~~~~ 843 (967)
+.+..+.++.++|.+|..+|++++|+.+|++|+++.+ ..++.++|.+|..+ |++++|+..|++
T Consensus 72 --------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 72 --------NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 0112246889999999999999999999999998432 23788999999996 999999999999
Q ss_pred HHHHccCC------HHHHHHHHc----cCChHHHHHHHHHhhccCCCCch-------HHHHHHHHHHhCCCHHHHHHHHH
Q 002100 844 LIEKARNN------ASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTY-------PYRYRAAVLMDDHKEAEAIAELS 906 (967)
Q Consensus 844 al~~~p~~------~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~-------~~~~la~~~~~~g~~~eAi~~~~ 906 (967)
+++..|.. ..++..+|. .|++++|+..|++++++.|++.. ++.++|.++...|++++|+..|+
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99998864 456777774 39999999999999999988754 57889999999999999999999
Q ss_pred HHHhcCCChH------HHHHHHHHHH--HcCChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 002100 907 RAIAFKPDLQ------LLHLRAAFHD--SMGDHLHTQRDCEAALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 907 kal~~~p~~~------~~~~~a~~~~--~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~ 959 (967)
++++++|+.. .+..++..+. ..+++++|+..|++++.++|.+..++.-..+.-
T Consensus 224 ~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 224 EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp GGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 9999999832 3444556554 467899999999999999998776655444433
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.73 E-value=6.2e-17 Score=172.46 Aligned_cols=203 Identities=15% Similarity=0.087 Sum_probs=139.3
Q ss_pred cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchH
Q 002100 707 YSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKG 786 (967)
Q Consensus 707 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~ 786 (967)
..|.+++.++.+|..++..|++++|+..|+++++.+|++. ...
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-------------------------------------~~~ 52 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE-------------------------------------WAA 52 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST-------------------------------------THH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc-------------------------------------chH
Confidence 3455555666666666666666666666666665555331 112
Q ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHhccCc-----HHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHccCCHH
Q 002100 787 QALNNLGSVYVDCEKLDLAADCYMNALNIKH-----TRAHQGLARVYHL--------KNQRKAAYDEMTKLIEKARNNAS 853 (967)
Q Consensus 787 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~-----~~a~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~ 853 (967)
.+++.+|.+|...|++++|+..|+++++..| ..+++.+|.+++. +|++++|+..|+++++.+|++..
T Consensus 53 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 132 (261)
T 3qky_A 53 DAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL 132 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh
Confidence 4556666666666666666666666665322 2366667777777 88888888888888888887654
Q ss_pred HHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHc-
Q 002100 854 AYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL----QLLHLRAAFHDSM- 928 (967)
Q Consensus 854 ~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~----~~~~~~a~~~~~~- 928 (967)
+...+.. ...+.+.....++.+|.+|...|++++|+..|+++++..|+. .+++.+|.+|..+
T Consensus 133 ~~~a~~~-------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g 199 (261)
T 3qky_A 133 VDDATQK-------------IRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA 199 (261)
T ss_dssp HHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence 4433321 111112223447899999999999999999999999999982 4899999999987
Q ss_pred ---------CChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 002100 929 ---------GDHLHTQRDCEAALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 929 ---------g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~ 959 (967)
|++++|+..|+++++.+|+++.+......+.
T Consensus 200 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 239 (261)
T 3qky_A 200 EQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYT 239 (261)
T ss_dssp HTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred ccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 9999999999999999999976655444443
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.73 E-value=5.8e-17 Score=197.14 Aligned_cols=172 Identities=12% Similarity=0.011 Sum_probs=163.0
Q ss_pred hhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHh--------ccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 002100 547 ELDPTLSYPYKYRAILLVEENKLAAAITEINRII--------GFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDP 617 (967)
Q Consensus 547 ~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 617 (967)
.++|+++.+++..| ...|++++|++.|++++ +.+| +..+++.+|.++..+|++++|+..|+++++++|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 56899998888877 88999999999999999 8889 899999999999999999999999999999999
Q ss_pred CchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHH
Q 002100 618 SYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAA 697 (967)
Q Consensus 618 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A 697 (967)
++..++ +.++.++...+++++| +..|+++++.+|+++.+++.+|.++..+|++++
T Consensus 465 ~~~~a~------~~lg~~~~~~g~~~~A------------------~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~- 519 (681)
T 2pzi_A 465 WRWRLV------WYRAVAELLTGDYDSA------------------TKHFTEVLDTFPGELAPKLALAATAELAGNTDE- 519 (681)
T ss_dssp CCHHHH------HHHHHHHHHHTCHHHH------------------HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-
T ss_pred chHHHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-
Confidence 999999 8889999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 698 MRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 698 ~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
+..|+++++.+|++..+++++|.++..+|++++|+..|+++++++|++.
T Consensus 520 ~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 568 (681)
T 2pzi_A 520 HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFT 568 (681)
T ss_dssp TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccH
Confidence 9999999999999999999999999999999999999999999999776
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.72 E-value=3.5e-16 Score=168.72 Aligned_cols=229 Identities=11% Similarity=0.069 Sum_probs=203.4
Q ss_pred CcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhH----HHh
Q 002100 567 NKLAAAITEINRIIGFKV-SPDCLELRAWISIALE--DYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQ----PLV 639 (967)
Q Consensus 567 g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~----~~~ 639 (967)
...++|+..++++|.++| +..++..++.+...++ ++++++..+.+++..+|++..++ +.++.+. ...
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW------~~R~~iL~~~~~~l 120 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIW------NYRQLIIGQIMELN 120 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHH------HHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHH------HHHHHHHHHHHHhc
Confidence 344689999999999999 8999999999999999 99999999999999999999999 5555555 443
Q ss_pred ---hchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHH--HHHHHHHHHHhcCCchhHH
Q 002100 640 ---QQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQK--AAMRSLRLARNYSTSEHEK 714 (967)
Q Consensus 640 ---~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~--~A~~~l~~al~~~p~~~~a 714 (967)
++++++ +..+.++++.+|++..+|..++.++...+.++ +++..++++++.+|.+..+
T Consensus 121 ~~~~~~~~E------------------L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sA 182 (306)
T 3dra_A 121 NNDFDPYRE------------------FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSA 182 (306)
T ss_dssp TTCCCTHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHH
T ss_pred cccCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHH
Confidence 455555 99999999999999999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHHHcCC------hHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHH
Q 002100 715 LVYEGWILYDTGH------REEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQA 788 (967)
Q Consensus 715 ~~~lg~~~~~~g~------~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a 788 (967)
|.+.+.++...++ ++++++.+++++.++|++. .+
T Consensus 183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~----------------------------------------Sa 222 (306)
T 3dra_A 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNP----------------------------------------ST 222 (306)
T ss_dssp HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCH----------------------------------------HH
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCc----------------------------------------cH
Confidence 9999999999988 9999999999999999777 79
Q ss_pred HHHhHHHHHhcccHHH-HHHHHHHHhccC-----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HccCCHHHHHHHH
Q 002100 789 LNNLGSVYVDCEKLDL-AADCYMNALNIK-----HTRAHQGLARVYHLKNQRKAAYDEMTKLIE-KARNNASAYEKRS 859 (967)
Q Consensus 789 ~~~lg~~~~~~g~~~~-A~~~~~~Al~~~-----~~~a~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~~ 859 (967)
|+.++.++...|+..+ ...++.++++.+ ...++..+|.++.+.|+.++|++.|+.+++ .+|-....|..++
T Consensus 223 W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 223 WNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 9999999999888555 455777777644 567999999999999999999999999997 6898888877765
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.71 E-value=2.3e-16 Score=191.87 Aligned_cols=242 Identities=17% Similarity=0.073 Sum_probs=193.1
Q ss_pred hcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH--------hcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 672 ANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLAR--------NYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 672 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al--------~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
..+|.++..++..+ ...|++++|+..|++++ +.+|++.++++.+|.++..+|++++|+..|+++++++|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 46788888887766 78999999999999999 99999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC--cHHHH
Q 002100 744 SFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK--HTRAH 821 (967)
Q Consensus 744 ~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~ 821 (967)
++. .+++++|.+|...|++++|+..|+++++.+ ...++
T Consensus 465 ~~~----------------------------------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 504 (681)
T 2pzi_A 465 WRW----------------------------------------RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPK 504 (681)
T ss_dssp CCH----------------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred chH----------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 776 899999999999999999999999999955 45699
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCC
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHK 897 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~ 897 (967)
.++|.++..+|++++ +..|+++++.+|++..+|+.+|. .|++++|+..|+++++++|++..++.++|.++...++
T Consensus 505 ~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 505 LALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999 99999999999999999999994 3999999999999999999999999999999988666
Q ss_pred --------HHHHHHHHHHHHhcCCChHHHHHHHHH------HHHcCC----------------hHHHHHHHHHHHhcCCC
Q 002100 898 --------EAEAIAELSRAIAFKPDLQLLHLRAAF------HDSMGD----------------HLHTQRDCEAALCLDPN 947 (967)
Q Consensus 898 --------~~eAi~~~~kal~~~p~~~~~~~~a~~------~~~~g~----------------~~~A~~~~~~al~~~P~ 947 (967)
+++|+..+.+.....|.. ...++.+ ....++ ...+.+.|++.....|.
T Consensus 584 ~~~~~~~~~~~A~~~l~~~~~~~~~~--~~l~~~ll~~~l~~~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~ 661 (681)
T 2pzi_A 584 TSEVTEEQIRDAARRVEALPPTEPRV--LQIRALVLGGALDWLKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPT 661 (681)
T ss_dssp ---CCHHHHHHHHHHHHTSCTTSTTH--HHHHHHHHHHHHHHHTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCHHHHHHHHHHHhhCCCCcHHH--HHHHHHHHHHHHHHHHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCC
Confidence 444444333332223332 1111111 122221 14477788888888888
Q ss_pred chhHHHHHHHHH
Q 002100 948 HTDTLELYDKAT 959 (967)
Q Consensus 948 ~~~~l~l~~r~~ 959 (967)
..+-..+..+++
T Consensus 662 ~~~r~~lvd~a~ 673 (681)
T 2pzi_A 662 QRHRYTLVDMAN 673 (681)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHhc
Confidence 765444444443
No 100
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.71 E-value=1.5e-15 Score=170.93 Aligned_cols=311 Identities=11% Similarity=-0.058 Sum_probs=231.6
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C-h----hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhh
Q 002100 554 YPYKYRAILLVEENKLAAAITEINRIIGFKV-S-P----DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLH 627 (967)
Q Consensus 554 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~-~----~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 627 (967)
.++..+|.++...|++++|+..+++++...| . + .++..+|.++...|++++|+..+++++.+.|..........
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 4567788889999999999999999998877 2 2 26788899999999999999999999988665443332222
Q ss_pred hhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcC--------CCChHHHHHHHHHHHHhcCHHHHHH
Q 002100 628 GDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAND--------PGKSLLRFRQSLLLLRLNSQKAAMR 699 (967)
Q Consensus 628 ~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~--------p~~~~~~~~~g~~~~~~g~~~~A~~ 699 (967)
....++.++...|++++| +..+.++++.. |.....+..+|.++...|++++|+.
T Consensus 95 ~~~~la~~~~~~G~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTA------------------WETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 156 (373)
T ss_dssp HHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHH------------------HHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 336778888889999988 77777777653 3345577889999999999999999
Q ss_pred HHHHHHhcCCc-----hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHH
Q 002100 700 SLRLARNYSTS-----EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEE 774 (967)
Q Consensus 700 ~l~~al~~~p~-----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~ 774 (967)
.+++++...+. ...++..+|.++...|++++|+..+++++.+.+...
T Consensus 157 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~---------------------------- 208 (373)
T 1hz4_A 157 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK---------------------------- 208 (373)
T ss_dssp HHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC----------------------------
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC----------------------------
Confidence 99999988764 245788999999999999999999999987644211
Q ss_pred HhcCCCCCCc--hHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002100 775 ALRCPSDGLR--KGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT------RAHQGLARVYHLKNQRKAAYDEMTKLIE 846 (967)
Q Consensus 775 ~~~~~~~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~------~a~~~la~~~~~~g~~~~A~~~~~~al~ 846 (967)
.+. .......++.++...|++++|...+++++.+.+. ..+..+|.++...|++++|...++++++
T Consensus 209 -------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 209 -------YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 000 0011223456688999999999999999985432 2678899999999999999999999988
Q ss_pred HccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 002100 847 KARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHD 926 (967)
Q Consensus 847 ~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~ 926 (967)
..+... . .+....++..+|.++...|++++|...++++++..+... ....+.
T Consensus 282 ~~~~~~----------~--------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g----~~~~~~ 333 (373)
T 1hz4_A 282 NARSLR----------L--------------MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG----FISHFV 333 (373)
T ss_dssp HHHHTT----------C--------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC----CCHHHH
T ss_pred HHHhCc----------c--------------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc----HHHHHH
Confidence 655210 0 001123566788889999999999999999987654321 111222
Q ss_pred HcCChHHHHHHHHHHHhcCCC
Q 002100 927 SMGDHLHTQRDCEAALCLDPN 947 (967)
Q Consensus 927 ~~g~~~~A~~~~~~al~~~P~ 947 (967)
..| +.....+++.+...|-
T Consensus 334 ~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 334 IEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp TTH--HHHHHHHHHHHHTTCS
T ss_pred Hcc--HHHHHHHHHHHhCCCC
Confidence 233 5667777888888775
No 101
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.69 E-value=3e-15 Score=168.39 Aligned_cols=278 Identities=13% Similarity=0.019 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchh-------HHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHH
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIY-------SLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQ 527 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~-------a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~ 527 (967)
..+.++..+|.+++..|++++|+..+++++...+.. +...++.++...|++
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~---------------------- 69 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGEL---------------------- 69 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCH----------------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcH----------------------
Confidence 345677889999999999999999999999985421 223334444444444
Q ss_pred HHhhcCChHHHHHHHHHhHhhCCCCc------hhHHHHHHHHHhcCcHHHHHHHHHHHhccC--------C-ChhHHHHH
Q 002100 528 ERSLYCSGKEKMMDLNTATELDPTLS------YPYKYRAILLVEENKLAAAITEINRIIGFK--------V-SPDCLELR 592 (967)
Q Consensus 528 ~~~~y~~~~~A~~~~~~al~l~P~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p-~~~~~~~l 592 (967)
++|+..+++++++.|... .++..+|.++...|++++|+..+++++... | ...++..+
T Consensus 70 --------~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 141 (373)
T 1hz4_A 70 --------TRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 141 (373)
T ss_dssp --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHH
Confidence 556666666655544332 346789999999999999999999999865 3 34577889
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHh
Q 002100 593 AWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLA 672 (967)
Q Consensus 593 a~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~ 672 (967)
|.++...|++++|...+++++...|...... .......++.++...+++++| +..+.+++.
T Consensus 142 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A------------------~~~l~~a~~ 202 (373)
T 1hz4_A 142 AQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNA------------------RSQLNRLEN 202 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHH------------------HHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHH
Confidence 9999999999999999999999877542211 111236788899999999999 777877776
Q ss_pred cCC--CChHHHH-----HHHHHHHHhcCHHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 673 NDP--GKSLLRF-----RQSLLLLRLNSQKAAMRSLRLARNYSTSE----HEKLVYEGWILYDTGHREEALAKAEESISI 741 (967)
Q Consensus 673 ~~p--~~~~~~~-----~~g~~~~~~g~~~~A~~~l~~al~~~p~~----~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 741 (967)
..+ ..+..+. .++.++...|++++|...+++++...|.. ...+..+|.++...|++++|+..+++++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 203 LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 532 2211111 34455778888888888888888766543 234567788888888888888888888755
Q ss_pred ccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc
Q 002100 742 QRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI 815 (967)
Q Consensus 742 ~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~ 815 (967)
.+... .......++..+|.++...|++++|...|++++..
T Consensus 283 ~~~~~----------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 283 ARSLR----------------------------------LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHTT----------------------------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCc----------------------------------chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44111 00011135566677777777777777777777653
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.68 E-value=4.2e-16 Score=159.98 Aligned_cols=174 Identities=12% Similarity=0.023 Sum_probs=149.3
Q ss_pred HHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHH----------------HHHHHHHhCCHHHHHHHHHHHHHH
Q 002100 786 GQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQG----------------LARVYHLKNQRKAAYDEMTKLIEK 847 (967)
Q Consensus 786 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~----------------la~~~~~~g~~~~A~~~~~~al~~ 847 (967)
...+...|..+...|++++|+.+|+++++.+|.+ +++. +|.++..+|++++|+..|+++++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3577889999999999999999999999976654 7888 999999999999999999999999
Q ss_pred ccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCC--HHHHHHHHHHHHhcCCChHHHHHH
Q 002100 848 ARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHK--EAEAIAELSRAIAFKPDLQLLHLR 921 (967)
Q Consensus 848 ~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~--~~eAi~~~~kal~~~p~~~~~~~~ 921 (967)
+|++..++..+|.. |++++|+..|+++++++|+++.++.++|.+|...|+ ...+...+.+++...|...+++.+
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 163 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 99999999999953 999999999999999999999999999999987654 566778888887544444478889
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 002100 922 AAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATE 960 (967)
Q Consensus 922 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~ 960 (967)
|.++..+|++++|+..|++|++++|++. +...+.++.+
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i~~ 201 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKILR 201 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHHHHH
Confidence 9999999999999999999999999854 4455555543
No 103
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.68 E-value=4.3e-16 Score=169.08 Aligned_cols=218 Identities=11% Similarity=-0.037 Sum_probs=173.5
Q ss_pred hHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-------ChhHHHHHHHHHHHhcCHHHHHH
Q 002100 535 GKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-------SPDCLELRAWISIALEDYDGALR 607 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~la~~~~~~g~~~~A~~ 607 (967)
+++|+..|+++ |.+|...|++++|+..|++++.+.+ ...++..+|.+|..+|++++|+.
T Consensus 33 ~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 98 (292)
T 1qqe_A 33 FEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98 (292)
T ss_dssp HHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 38888888887 5678899999999999999998854 25689999999999999999999
Q ss_pred HHHHHHHhCCCchHHhhhhhhhhhHhhhHHHh-hchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCC------hHH
Q 002100 608 DVRALLTLDPSYMMFYGQLHGDNLVETLQPLV-QQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGK------SLL 680 (967)
Q Consensus 608 ~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~-~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~------~~~ 680 (967)
.|++++++.|..............++.++... +++++| +..|+++++..|.. ...
T Consensus 99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A------------------~~~~~~Al~~~~~~~~~~~~~~~ 160 (292)
T 1qqe_A 99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKA------------------IDCYELAGEWYAQDQSVALSNKC 160 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH------------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHH------------------HHHHHHHHHHHHhCCChHHHHHH
Confidence 99999999775432221112236788999995 999999 99999999988754 456
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhH-------HHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Q 002100 681 RFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHE-------KLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAY 753 (967)
Q Consensus 681 ~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~-------a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 753 (967)
+..+|.++..+|++++|+..|+++++..|++.. ++..+|.++..+|++++|+..|+++++++|++..
T Consensus 161 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~------ 234 (292)
T 1qqe_A 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD------ 234 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC------
Confidence 889999999999999999999999999987643 5788999999999999999999999999996550
Q ss_pred HhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHH--hcccHHHHHHHHHHHhccCcHH
Q 002100 754 ALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYV--DCEKLDLAADCYMNALNIKHTR 819 (967)
Q Consensus 754 ~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~--~~g~~~~A~~~~~~Al~~~~~~ 819 (967)
......+..++..+. ..+++++|+..|++++.+++..
T Consensus 235 -----------------------------~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 235 -----------------------------SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp --------------------------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred -----------------------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 011134455555554 5678999999999999888765
No 104
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.68 E-value=7.8e-17 Score=178.90 Aligned_cols=326 Identities=9% Similarity=0.011 Sum_probs=174.4
Q ss_pred hHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 535 GKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
.++|.+.+++. +.+.+|..+|.++...|++++|++.|.++ +++..+...+..+...|++++|+..++.+.+
T Consensus 19 ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 19 LDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 47888888877 33469999999999999999999999764 4677889999999999999999999998887
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCH
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQ 694 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~ 694 (967)
..++ +... ..+..+|...+++.++. ..+. .| +...+..+|..+...|.|
T Consensus 90 ~~~~-~~i~------~~Li~~Y~Klg~l~e~e------------------~f~~-----~p-n~~a~~~IGd~~~~~g~y 138 (449)
T 1b89_A 90 KARE-SYVE------TELIFALAKTNRLAELE------------------EFIN-----GP-NNAHIQQVGDRCYDEKMY 138 (449)
T ss_dssp --------------------------CHHHHT------------------TTTT-----CC-----------------CT
T ss_pred hCcc-chhH------HHHHHHHHHhCCHHHHH------------------HHHc-----CC-cHHHHHHHHHHHHHcCCH
Confidence 5433 3333 44567788888888872 2221 23 345899999999999999
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHH
Q 002100 695 KAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEE 774 (967)
Q Consensus 695 ~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~ 774 (967)
++|...|.++ ..+..+|.++.++|++++|++.++++. +|
T Consensus 139 eeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~------------------------------- 177 (449)
T 1b89_A 139 DAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--ST------------------------------- 177 (449)
T ss_dssp TTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CH-------------------------------
T ss_pred HHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC--Cc-------------------------------
Confidence 9999999976 478899999999999999999999983 33
Q ss_pred HhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHH
Q 002100 775 ALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASA 854 (967)
Q Consensus 775 ~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 854 (967)
..|..+..++...|+++.|..+..+ +.. +++-...+...|.+.|++++|+..+++++..++....+
T Consensus 178 ------------~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~-~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ 243 (449)
T 1b89_A 178 ------------RTWKEVCFACVDGKEFRLAQMCGLH-IVV-HADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 243 (449)
T ss_dssp ------------HHHHHHHHHHHHTTCHHHHHHTTTT-TTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHH
T ss_pred ------------hhHHHHHHHHHHcCcHHHHHHHHHH-HHh-CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHH
Confidence 6788889999999999999888775 333 33445568899999999999999999999999999999
Q ss_pred HHHHHcc------CChHHHHHHHHHhhccCC-----CCchHHHHHHHHHHhCCCHHHHHHHHHHHHh-------------
Q 002100 855 YEKRSEY------CDRDMAKSDLSMATQLDP-----MRTYPYRYRAAVLMDDHKEAEAIAELSRAIA------------- 910 (967)
Q Consensus 855 ~~~~~~~------~~~~~A~~~l~~al~l~p-----~~~~~~~~la~~~~~~g~~~eAi~~~~kal~------------- 910 (967)
+..++.. ++..+.+..|...+.+.| .....|..+..+|.+.++++.|+...-+...
T Consensus 244 ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~ 323 (449)
T 1b89_A 244 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT 323 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHh
Confidence 9999842 677888889998999988 8999999999999999999999875544322
Q ss_pred cCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 002100 911 FKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDK 957 (967)
Q Consensus 911 ~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r 957 (967)
.-.+.+.++....+|. +....++.++..++.-.-++..+..++.+
T Consensus 324 kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 324 KVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp HCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 2233567777666666 66777788888888555555566555544
No 105
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.68 E-value=1.3e-16 Score=177.11 Aligned_cols=334 Identities=13% Similarity=0.066 Sum_probs=189.0
Q ss_pred HHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHH
Q 002100 525 MYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDG 604 (967)
Q Consensus 525 ~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~ 604 (967)
.+...+.| ++|+..++.+.+..++ +.....++.+|.+.|++.++.+.++ .|+..++..+|..+...|.|++
T Consensus 70 ~ae~~g~~---EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 70 AANTSGNW---EELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp -------------------------------------------CHHHHTTTTT-----CC----------------CTTT
T ss_pred HHHhCCCH---HHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHHcCCHHH
Confidence 34444444 7777777777765333 5666777778888888888776664 3555688888888888888888
Q ss_pred HHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHH
Q 002100 605 ALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQ 684 (967)
Q Consensus 605 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~ 684 (967)
|+..|.++ ..+ ..++.++..+++|+.| ++.+.++ .++..|...
T Consensus 141 A~~~Y~~a--------~n~------~~LA~~L~~Lg~yq~A------------------Vea~~KA-----~~~~~Wk~v 183 (449)
T 1b89_A 141 AKLLYNNV--------SNF------GRLASTLVHLGEYQAA------------------VDGARKA-----NSTRTWKEV 183 (449)
T ss_dssp HHHHHHHT--------TCH------HHHHHHHHTTTCHHHH------------------HHHHHHH-----TCHHHHHHH
T ss_pred HHHHHHHh--------hhH------HHHHHHHHHhccHHHH------------------HHHHHHc-----CCchhHHHH
Confidence 88888766 123 4457778888888887 7777777 356777777
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCc
Q 002100 685 SLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPES 764 (967)
Q Consensus 685 g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~ 764 (967)
..+....|+++.|..+... +...|++ +..+...|.+.|++++|+..+++++.+++...
T Consensus 184 ~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~------------------ 241 (449)
T 1b89_A 184 CFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHM------------------ 241 (449)
T ss_dssp HHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCH------------------
T ss_pred HHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHH------------------
Confidence 8888888888888776654 3355544 44577788888999999999999988887554
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHH--hcccHHHHHHHHHHHhccCc-------HHHHHHHHHHHHHhCCHH
Q 002100 765 SAYVIQLLEEALRCPSDGLRKGQALNNLGSVYV--DCEKLDLAADCYMNALNIKH-------TRAHQGLARVYHLKNQRK 835 (967)
Q Consensus 765 ~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~--~~g~~~~A~~~~~~Al~~~~-------~~a~~~la~~~~~~g~~~ 835 (967)
.++..+|.+|. ..++..+.++.|...+.+.+ ...|..+..+|...++++
T Consensus 242 ----------------------~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 242 ----------------------GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp ----------------------HHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred ----------------------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 45666666654 45677788888877777544 236778888888888888
Q ss_pred HHHHHHHHHHHH------------ccCCHHHHHHHHcc--CChHHHHHHHHHhh--ccCCCCchHHHHHHHHHHhCCCHH
Q 002100 836 AAYDEMTKLIEK------------ARNNASAYEKRSEY--CDRDMAKSDLSMAT--QLDPMRTYPYRYRAAVLMDDHKEA 899 (967)
Q Consensus 836 ~A~~~~~~al~~------------~p~~~~~~~~~~~~--~~~~~A~~~l~~al--~l~p~~~~~~~~la~~~~~~g~~~ 899 (967)
.|...+-.-... .+.+.+.|+....+ ++...++.++..++ ++|++.. -..+.+.|+..
T Consensus 300 ~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~------v~~~~~~~~l~ 373 (449)
T 1b89_A 300 NAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRA------VNYFSKVKQLP 373 (449)
T ss_dssp HHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHH------HHHHHHTTCTT
T ss_pred HHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHHH------HHHHHHcCCcH
Confidence 888766543322 45567777766643 67777888888888 6666422 23456668877
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 002100 900 EAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATE 960 (967)
Q Consensus 900 eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~ 960 (967)
-...++..+...+ ...+-..+-.+|....|++.= +..++..- +-+.+.+-+|+++
T Consensus 374 l~~~yl~~v~~~n-~~~vnealn~l~ieeed~~~l----r~si~~~~-nfd~~~l~~~le~ 428 (449)
T 1b89_A 374 LVKPYLRSVQNHN-NKSVNESLNNLFITEEDYQAL----RTSIDAYD-NFDNISLAQRLEK 428 (449)
T ss_dssp TTHHHHHHHHTTC-CHHHHHHHHHHHHHTTCHHHH----HHHHHHCC-CSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh-HHHHHHHHHHHHHhhhhHHHH----HHHHHHhc-CcCHHHHHHHHhc
Confidence 7777776655443 233444556778888898753 44444433 3344555666554
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.67 E-value=7.1e-16 Score=158.28 Aligned_cols=185 Identities=14% Similarity=0.031 Sum_probs=140.2
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchH
Q 002100 585 SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSL 664 (967)
Q Consensus 585 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al 664 (967)
+.+.++.+|..+...|++++|+..|+++++.+|++..++. ..+.. .. .
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------~~~~~--------~~------------------~ 50 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYY------WTNVD--------KN------------------S 50 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHH------HHHSC--------TT------------------S
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHH------Hhhhc--------ch------------------h
Confidence 3556778888888888888888888888888888877662 11100 00 0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccc
Q 002100 665 AVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRS 744 (967)
Q Consensus 665 ~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 744 (967)
. ..+.+.+.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+
T Consensus 51 ~----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 120 (208)
T 3urz_A 51 E----------ISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120 (208)
T ss_dssp H----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred h----------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 0 012345668888888888888888888888888888888888888888888888888888888888887
Q ss_pred hHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhccc--HHHHHHHHHHHhccCcHH-HH
Q 002100 745 FEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEK--LDLAADCYMNALNIKHTR-AH 821 (967)
Q Consensus 745 ~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~--~~~A~~~~~~Al~~~~~~-a~ 821 (967)
+. .+++++|.+|...++ .+.+...|++++.+.+.. ++
T Consensus 121 ~~----------------------------------------~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 160 (208)
T 3urz_A 121 NL----------------------------------------AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYAR 160 (208)
T ss_dssp CH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHH
T ss_pred CH----------------------------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHH
Confidence 66 788888888876654 456777888887766554 77
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCC
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNN 851 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 851 (967)
+.+|.++...|++++|+..|+++++.+|+.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 788888888888888888888888888864
No 107
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.67 E-value=6.1e-13 Score=158.99 Aligned_cols=442 Identities=10% Similarity=-0.029 Sum_probs=279.6
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchh--HHHHHHHHHHhcCC---hHHHHHHHHHHHhcc
Q 002100 445 RLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIY--SLVGVARTKFKRGH---KYSAYKLMNSLISDY 519 (967)
Q Consensus 445 ~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~--a~~~la~~~~~~g~---~~~A~~~l~~~i~~~ 519 (967)
.+.+....+|.+...|..+.......++++.|...|++++...|.. .|...+....+.|+ ...+..+|++++...
T Consensus 54 ~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~ 133 (679)
T 4e6h_A 54 KLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKE 133 (679)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhc
Confidence 3444555677788889889888888999999999999999998843 34444555566677 788888888888877
Q ss_pred C--cchhHHHHHh----hcCCh----HHH----HHHHHHhHhh----CCCCchhHHHHHHHHH---------hcCcHHHH
Q 002100 520 T--PVGWMYQERS----LYCSG----KEK----MMDLNTATEL----DPTLSYPYKYRAILLV---------EENKLAAA 572 (967)
Q Consensus 520 ~--~~g~~~~~~~----~y~~~----~~A----~~~~~~al~l----~P~~~~~~~~la~~~~---------~~g~~~~A 572 (967)
+ +...+....- ..++. +++ .+.|+.|+.. +|.....|........ .+++++.+
T Consensus 134 ~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~ 213 (679)
T 4e6h_A 134 LGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYI 213 (679)
T ss_dssp SCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHH
Confidence 2 2222211111 11111 223 3566666653 4544445544433322 23456677
Q ss_pred HHHHHHHhccCC--ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHH
Q 002100 573 ITEINRIIGFKV--SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQ 650 (967)
Q Consensus 573 ~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~ 650 (967)
...|++++.+ | +.+-++..-..+...-+...|... +.....+|+.|..+..
T Consensus 214 R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~--------------------------~~e~~~~y~~Ar~~~~ 266 (679)
T 4e6h_A 214 RKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRH--------------------------IGELSAQYMNARSLYQ 266 (679)
T ss_dssp HHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHH--------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHH--------------------------HHHhhHHHHHHHHHHH
Confidence 7777777754 4 222111111111100000001110 1111122332311111
Q ss_pred HHhhh-ccccccchHHHHHHH-----HhcCCC----C-hHHHHHHHHHHHHhcC---------HHHHHHHHHHHHhcCCc
Q 002100 651 LYDRW-SSVDDIGSLAVVHHM-----LANDPG----K-SLLRFRQSLLLLRLNS---------QKAAMRSLRLARNYSTS 710 (967)
Q Consensus 651 l~~~~-~~~d~~~al~~~~~~-----l~~~p~----~-~~~~~~~g~~~~~~g~---------~~~A~~~l~~al~~~p~ 710 (967)
..... ...+. . +... ...-|. . ..+..-...+-+...+ .+.....|++++...|.
T Consensus 267 e~~~~~~~l~r--~---~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~ 341 (679)
T 4e6h_A 267 DWLNITKGLKR--N---LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF 341 (679)
T ss_dssp HHHHHTTTCCC--C---CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhHhh--c---cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC
Confidence 00000 00000 0 0000 000010 0 0011111111111111 23456688899999999
Q ss_pred hhHHHHHHHHHHHHcCChHHHH-HHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHH
Q 002100 711 EHEKLVYEGWILYDTGHREEAL-AKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQAL 789 (967)
Q Consensus 711 ~~~a~~~lg~~~~~~g~~~eA~-~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~ 789 (967)
+++.|+..+..+...|+.++|. ..|++|+...|... ..+
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~----------------------------------------~Lw 381 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA----------------------------------------VLA 381 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH----------------------------------------HHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH----------------------------------------HHH
Confidence 9999999999888889888886 99999988877544 566
Q ss_pred HHhHHHHHhcccHHHHHHHHHHHhccC-----------c-------------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002100 790 NNLGSVYVDCEKLDLAADCYMNALNIK-----------H-------------TRAHQGLARVYHLKNQRKAAYDEMTKLI 845 (967)
Q Consensus 790 ~~lg~~~~~~g~~~~A~~~~~~Al~~~-----------~-------------~~a~~~la~~~~~~g~~~~A~~~~~~al 845 (967)
..++......|++++|.+.|+++++.- | ..+|...++.....|+.+.|...|.+++
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777788888888889998888888621 1 2368888888888999999999999999
Q ss_pred HH-ccCCHHHHHHHHcc-----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---h-
Q 002100 846 EK-ARNNASAYEKRSEY-----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD---L- 915 (967)
Q Consensus 846 ~~-~p~~~~~~~~~~~~-----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~---~- 915 (967)
+. .+....+|...+.. ++.+.|...|+.+++..|+++..+...+......|+.+.|...|++++...|+ .
T Consensus 462 ~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~ 541 (679)
T 4e6h_A 462 RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 541 (679)
T ss_dssp HTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred HhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 98 44456666655522 45899999999999999999999988898888899999999999999999884 2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 002100 916 QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKA 958 (967)
Q Consensus 916 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~ 958 (967)
..+.....+-...|+.+.+.+.++++++..|+++.+.-+..|-
T Consensus 542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 542 MIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHh
Confidence 3677778888899999999999999999999998776665553
No 108
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.66 E-value=9.3e-16 Score=164.09 Aligned_cols=229 Identities=15% Similarity=0.078 Sum_probs=162.2
Q ss_pred hHHHHHHHHh-------cC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHcC
Q 002100 663 SLAVVHHMLA-------ND-PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNY--------STSEHEKLVYEGWILYDTG 726 (967)
Q Consensus 663 al~~~~~~l~-------~~-p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~--------~p~~~~a~~~lg~~~~~~g 726 (967)
|+..++++++ .+ |....++..+|.++...|++++|+..++++++. .|....++..+|.++...|
T Consensus 20 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 99 (283)
T 3edt_B 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99 (283)
T ss_dssp HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc
Confidence 3566665555 23 667788999999999999999999999999977 4677889999999999999
Q ss_pred ChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHH
Q 002100 727 HREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAA 806 (967)
Q Consensus 727 ~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~ 806 (967)
++++|+..+++++.+..... ..+.+....++.++|.+|...|++++|+
T Consensus 100 ~~~~A~~~~~~al~~~~~~~--------------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~ 147 (283)
T 3edt_B 100 KYKEAEPLCKRALEIREKVL--------------------------------GKFHPDVAKQLNNLALLCQNQGKAEEVE 147 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHH--------------------------------CTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHc--------------------------------CCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999997642110 0111234478999999999999999999
Q ss_pred HHHHHHhcc--------CcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhc
Q 002100 807 DCYMNALNI--------KHT--RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQ 876 (967)
Q Consensus 807 ~~~~~Al~~--------~~~--~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~ 876 (967)
.+|+++++. .+. .++..+|.++..+|++++|+..++++++..+.. ....
T Consensus 148 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---------------------~~~~ 206 (283)
T 3edt_B 148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK---------------------EFGS 206 (283)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---------------------HSSS
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---------------------cCCC
Confidence 999999985 333 388999999999999999999999999875531 0112
Q ss_pred cCCCCchHHHHHHHHHHhCCC------HHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 877 LDPMRTYPYRYRAAVLMDDHK------EAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCL 944 (967)
Q Consensus 877 l~p~~~~~~~~la~~~~~~g~------~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 944 (967)
..+.....+..++..+...+. +.++...++......|. ..++..+|.+|..+|++++|+..|++++++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 207 VNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 234444555555554444332 33444444433333333 236666777777777777777777777654
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.66 E-value=1.7e-15 Score=157.44 Aligned_cols=209 Identities=11% Similarity=0.048 Sum_probs=159.9
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE---HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
+..++.+|..+...|++++|+..|+++++..|.+ ..+++.+|.+++..|++++|+..|+++++.+|++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~-------- 75 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP-------- 75 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC--------
Confidence 5678889999999999999999999999998876 47899999999999999999999999999999554
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCH
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQR 834 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~ 834 (967)
....+++.+|.++...+.. .+ ..+..++.++..+|++
T Consensus 76 -----------------------------~~~~a~~~~g~~~~~~~~~-----~~---------~~~~~~~~~~~~~~~~ 112 (225)
T 2yhc_A 76 -----------------------------NIDYVMYMRGLTNMALDDS-----AL---------QGFFGVDRSDRDPQQA 112 (225)
T ss_dssp -----------------------------THHHHHHHHHHHHHHHHC----------------------------CCHHH
T ss_pred -----------------------------cHHHHHHHHHHHHHhhhhh-----hh---------hhhhccchhhcCcHHH
Confidence 2235778888888766532 11 1234566677778889
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 835 KAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 835 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
++|+..|+++++.+|++..++..+........ ........+|.+|.+.|++++|+..|+++++..|+
T Consensus 113 ~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~-------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 113 RAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD-------------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD 179 (225)
T ss_dssp HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence 99999999999998887665543332111111 11223467899999999999999999999999998
Q ss_pred h----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchh
Q 002100 915 L----QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTD 950 (967)
Q Consensus 915 ~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~ 950 (967)
. +++..+|.++.++|++++|+..++++....|++.+
T Consensus 180 ~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 180 TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 3 48999999999999999999999999999998754
No 110
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.66 E-value=2.2e-15 Score=149.91 Aligned_cols=170 Identities=15% Similarity=0.158 Sum_probs=161.4
Q ss_pred chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhh
Q 002100 553 SYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNL 631 (967)
Q Consensus 553 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 631 (967)
...+..+|.++...|++++|+..+++++...| ++.++..+|.++...|++++|+..++++++.+|++...+ ..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~ 81 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVA------TV 81 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH------HH
Confidence 46788899999999999999999999999999 899999999999999999999999999999999998888 77
Q ss_pred HhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch
Q 002100 632 VETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE 711 (967)
Q Consensus 632 ~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~ 711 (967)
++.++...+++++| +..+.++++.+|.++..+..+|.++...|++++|+..++++++..|.+
T Consensus 82 ~a~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 82 LGLTYVQVQKYDLA------------------VPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHHHHHHHTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhcCHHHH------------------HHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 88999999999999 899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 712 HEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 712 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
+.++..+|.++...|++++|+..++++++++|++.
T Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 99999999999999999999999999999988554
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.65 E-value=3e-16 Score=151.86 Aligned_cols=143 Identities=10% Similarity=0.028 Sum_probs=70.6
Q ss_pred HHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHH
Q 002100 560 AILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPL 638 (967)
Q Consensus 560 a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~ 638 (967)
|.++...|++++|+..+++++..+| ++..++.+|.+|...|+|++|+..|+++++++|++..++ ..++.++..
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~------~~lg~~~~~ 77 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAH------RFLGLLYEL 77 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHH
Confidence 4444444444555555555444444 444444445555555555555555555555555544444 444444444
Q ss_pred hhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHH-HHHHHhcCCchhHHHHH
Q 002100 639 VQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRS-LRLARNYSTSEHEKLVY 717 (967)
Q Consensus 639 ~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~-l~~al~~~p~~~~a~~~ 717 (967)
.+++++| +..|+++++.+|+++.+++.+|.++...|++++|... ++++++++|+++.++..
T Consensus 78 ~~~~~~A------------------~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l 139 (150)
T 4ga2_A 78 EENTDKA------------------VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKL 139 (150)
T ss_dssp TTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHH
T ss_pred cCchHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 4444444 4444455555555555555555555555555444433 35555555555555555
Q ss_pred HHHHHHHcC
Q 002100 718 EGWILYDTG 726 (967)
Q Consensus 718 lg~~~~~~g 726 (967)
++.++...|
T Consensus 140 ~~~ll~~~G 148 (150)
T 4ga2_A 140 KEQLLDCEG 148 (150)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHHhC
Confidence 555555544
No 112
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.65 E-value=1.5e-15 Score=151.13 Aligned_cols=169 Identities=14% Similarity=0.082 Sum_probs=156.9
Q ss_pred chHHHHHHhHHHHHhcccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc
Q 002100 784 RKGQALNNLGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY 861 (967)
Q Consensus 784 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 861 (967)
.....+..+|.++...|++++|+..|+++++.. ...++..+|.++...|++++|+..++++++..|++..++..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 345788999999999999999999999999854 456899999999999999999999999999999999999998853
Q ss_pred ----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHH
Q 002100 862 ----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQR 936 (967)
Q Consensus 862 ----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~ 936 (967)
+++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..|+ ..++..+|.++..+|++++|+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 4689999999999999999999
Q ss_pred HHHHHHhcCCCchhHH
Q 002100 937 DCEAALCLDPNHTDTL 952 (967)
Q Consensus 937 ~~~~al~~~P~~~~~l 952 (967)
.++++++++|++....
T Consensus 166 ~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 166 HFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHCCCGGG
T ss_pred HHHHHHHcCCCchhhH
Confidence 9999999999887543
No 113
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.64 E-value=5.7e-16 Score=149.91 Aligned_cols=147 Identities=17% Similarity=0.075 Sum_probs=132.1
Q ss_pred cchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHh
Q 002100 521 PVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIAL 599 (967)
Q Consensus 521 ~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~ 599 (967)
++|.++..++.+ ++|++.+++++..+|+++.+++.+|.+|+..|+|++|++.|+++++++| ++.++..+|.+|..+
T Consensus 2 ~LG~~~~~~~~~---e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 2 PLGSMRRSKADV---ERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp -----CCCHHHH---HHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HhHHHHHHcChH---HHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 356777777766 9999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChH
Q 002100 600 EDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSL 679 (967)
Q Consensus 600 g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~ 679 (967)
|++++|+..|+++++++|+++.++ ..++.++...+++++| +...++++++++|+++.
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~------~~la~~~~~~~~~~~a-----------------a~~~~~~al~l~P~~~~ 135 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLV------LKIAELLCKNDVTDGR-----------------AKYWVERAAKLFPGSPA 135 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHHCSSSSH-----------------HHHHHHHHHHHSTTCHH
T ss_pred CchHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHcCChHHH-----------------HHHHHHHHHHhCcCCHH
Confidence 999999999999999999999999 7889999999999887 13446899999999999
Q ss_pred HHHHHHHHHHHhcC
Q 002100 680 LRFRQSLLLLRLNS 693 (967)
Q Consensus 680 ~~~~~g~~~~~~g~ 693 (967)
++..++.++...|+
T Consensus 136 ~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 136 VYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999888775
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.62 E-value=1.4e-14 Score=150.55 Aligned_cols=173 Identities=9% Similarity=-0.047 Sum_probs=145.1
Q ss_pred CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhh
Q 002100 552 LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S---PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLH 627 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 627 (967)
.+..++.+|..++..|++++|+..|++++...| + ..+++.+|.+|..+|++++|+..|+++++.+|++..+..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~--- 79 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY--- 79 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH---
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHH---
Confidence 346788889999999999999999999998888 3 468899999999999999999999999999998875321
Q ss_pred hhhhHhhhHHH------------------hhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH--------
Q 002100 628 GDNLVETLQPL------------------VQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR-------- 681 (967)
Q Consensus 628 ~~~~~~~l~~~------------------~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~-------- 681 (967)
+.+.++.++.. .+++++| +..|+++++.+|+.+.+.
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A------------------~~~~~~~l~~~P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAA------------------FSDFSKLVRGYPNSQYTTDATKRLVF 141 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHH------------------HHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHH------------------HHHHHHHHHHCcCChhHHHHHHHHHH
Confidence 11566666655 3455555 999999999999987654
Q ss_pred ---------HHHHHHHHHhcCHHHHHHHHHHHHhcCCchh---HHHHHHHHHHHHcCChHHHHHHHHHHHhcccch
Q 002100 682 ---------FRQSLLLLRLNSQKAAMRSLRLARNYSTSEH---EKLVYEGWILYDTGHREEALAKAEESISIQRSF 745 (967)
Q Consensus 682 ---------~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~---~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 745 (967)
+.+|.+|...|++++|+..|+++++..|+++ +++..+|.++..+|++++|+..++++....|+.
T Consensus 142 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 142 LKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 5788999999999999999999999999875 789999999999999999999999999888843
No 115
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.61 E-value=5.4e-14 Score=152.36 Aligned_cols=187 Identities=13% Similarity=0.153 Sum_probs=166.7
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCc----------HHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC--H
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENK----------LAAAITEINRIIGFKV-SPDCLELRAWISIALED--Y 602 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~--~ 602 (967)
++|+..+.+++.++|++..+|..++.++...++ +++++..++.++..+| +..++..++++....++ +
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 689999999999999999999999999988876 7899999999999999 99999999999999994 8
Q ss_pred HHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhc-hhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH
Q 002100 603 DGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQ-WSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR 681 (967)
Q Consensus 603 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~-~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~ 681 (967)
++++..+.++++.+|.|..++ ..++.+....+. ++++ ++.+.++++.+|.+..+|
T Consensus 127 ~~EL~~~~k~l~~dprNy~AW------~~R~~vl~~l~~~~~ee------------------l~~~~~~I~~~p~N~SAW 182 (331)
T 3dss_A 127 ARELELCARFLEADERNFHCW------DYRRFVAAQAAVAPAEE------------------LAFTDSLITRNFSNYSSW 182 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCCHHHH------------------HHHHHHHHHHCSCCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHhCcCHHHH------------------HHHHHHHHHHCCCCHHHH
Confidence 999999999999999999999 666777777776 4566 999999999999999999
Q ss_pred HHHHHHHHHh--------------cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHc-----------CChHHHHHHHH
Q 002100 682 FRQSLLLLRL--------------NSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDT-----------GHREEALAKAE 736 (967)
Q Consensus 682 ~~~g~~~~~~--------------g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~-----------g~~~eA~~~~~ 736 (967)
..++.++... +.+++++..+.+++..+|++..+|+++..++... +.++++++.++
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ 262 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 9999999887 6689999999999999999999998887777665 35677788888
Q ss_pred HHHhcccchH
Q 002100 737 ESISIQRSFE 746 (967)
Q Consensus 737 ~al~~~p~~~ 746 (967)
+++++.|++.
T Consensus 263 elle~~pd~~ 272 (331)
T 3dss_A 263 ELQELEPENK 272 (331)
T ss_dssp HHHHHCTTCH
T ss_pred HHHhhCcccc
Confidence 8887777553
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.61 E-value=5.4e-15 Score=147.16 Aligned_cols=167 Identities=13% Similarity=0.032 Sum_probs=143.3
Q ss_pred CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhh
Q 002100 549 DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLH 627 (967)
Q Consensus 549 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 627 (967)
+|.....++.+|..+...|++++|+..|+++++.+| ++.+++.+|.++...|++++|+..+++++..+| ++...
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~---- 76 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYK---- 76 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHH----
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHH----
Confidence 466677899999999999999999999999999999 899999999999999999999999999999999 66554
Q ss_pred hhhhHhhhHH-HhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002100 628 GDNLVETLQP-LVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARN 706 (967)
Q Consensus 628 ~~~~~~~l~~-~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~ 706 (967)
...+.+.. ...... +++..++++++.+|+++.+++.+|.++...|++++|+..|+++++
T Consensus 77 --~~~~~~~~~~~~~~~------------------~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 77 --SLIAKLELHQQAAES------------------PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK 136 (176)
T ss_dssp --HHHHHHHHHHHHTSC------------------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHhhcccc------------------hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 22232211 111111 248999999999999999999999999999999999999999999
Q ss_pred cCCch--hHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 707 YSTSE--HEKLVYEGWILYDTGHREEALAKAEESIS 740 (967)
Q Consensus 707 ~~p~~--~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 740 (967)
.+|+. ..++..+|.++...|+.++|+..|++++.
T Consensus 137 ~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 137 VNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99986 56999999999999999999999999884
No 117
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.60 E-value=8.5e-15 Score=156.54 Aligned_cols=226 Identities=12% Similarity=0.027 Sum_probs=154.4
Q ss_pred CcHHHHHHHHHHHhc-------cC-C-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCchHHhhhhhhh
Q 002100 567 NKLAAAITEINRIIG-------FK-V-SPDCLELRAWISIALEDYDGALRDVRALLTLD--------PSYMMFYGQLHGD 629 (967)
Q Consensus 567 g~~~~A~~~~~~al~-------~~-p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~~~~~ 629 (967)
|++++|+..|++++. .+ | ...++..+|.++...|++++|+..|++++++. |....++
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------ 88 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATL------ 88 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH------
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHH------
Confidence 444444444444443 34 4 67789999999999999999999999999873 3334444
Q ss_pred hhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc--------CCCChHHHHHHHHHHHHhcCHHHHHHHH
Q 002100 630 NLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN--------DPGKSLLRFRQSLLLLRLNSQKAAMRSL 701 (967)
Q Consensus 630 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~--------~p~~~~~~~~~g~~~~~~g~~~~A~~~l 701 (967)
..++.++...+++++| +..+.++++. +|....++..+|.++...|++++|+..+
T Consensus 89 ~~l~~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 150 (283)
T 3edt_B 89 NNLAVLYGKRGKYKEA------------------EPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYY 150 (283)
T ss_dssp HHHHHHHHTTTCHHHH------------------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHH------------------HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7788999999999999 7778877776 4677789999999999999999999999
Q ss_pred HHHHhc--------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHH
Q 002100 702 RLARNY--------STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLE 773 (967)
Q Consensus 702 ~~al~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le 773 (967)
+++++. .|....++..+|.++...|++++|+..+++++++.+... ..
T Consensus 151 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--------~~----------------- 205 (283)
T 3edt_B 151 RRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE--------FG----------------- 205 (283)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH--------SS-----------------
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--------CC-----------------
Confidence 999998 777889999999999999999999999999998765321 00
Q ss_pred HHhcCCCCCCchHHHHHHhHHHHHhc------ccHHHHHHHHHHHhccCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002100 774 EALRCPSDGLRKGQALNNLGSVYVDC------EKLDLAADCYMNALNIKHT--RAHQGLARVYHLKNQRKAAYDEMTKLI 845 (967)
Q Consensus 774 ~~~~~~~~~~~~~~a~~~lg~~~~~~------g~~~~A~~~~~~Al~~~~~--~a~~~la~~~~~~g~~~~A~~~~~~al 845 (967)
...+.....+..++..+... ..+.++...++......+. .++..+|.+|..+|++++|+..|++++
T Consensus 206 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 206 ------SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp ------SCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------CcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00111112333333333332 2344444444443332222 266667777777777777777777766
Q ss_pred HH
Q 002100 846 EK 847 (967)
Q Consensus 846 ~~ 847 (967)
+.
T Consensus 280 ~~ 281 (283)
T 3edt_B 280 RN 281 (283)
T ss_dssp TT
T ss_pred Hh
Confidence 53
No 118
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.60 E-value=5.7e-13 Score=144.31 Aligned_cols=237 Identities=14% Similarity=0.107 Sum_probs=184.8
Q ss_pred hhcCChH-HHHHHHHHHHHhCchhHHHH--HHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHH
Q 002100 468 LEREEYK-DAQNWFKAAVEAGHIYSLVG--VARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNT 544 (967)
Q Consensus 468 ~~~g~y~-~A~~~f~~al~~~~~~a~~~--la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~ 544 (967)
.+.|+|. +|+.++++++.++|....+. -..+....+.. ..+ -.....+ ++++..++.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~-------------~~~----~~~~~~l---~~EL~~~~~ 99 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETE-------------KSP----EESAALV---KAELGFLES 99 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH-------------SCH----HHHHHHH---HHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhccc-------------ccc----hhhhHHH---HHHHHHHHH
Confidence 3567776 89999999999999554443 22222111100 000 0011224 899999999
Q ss_pred hHhhCCCCchhHHHHHHHHHhcCc--HHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCch
Q 002100 545 ATELDPTLSYPYKYRAILLVEENK--LAAAITEINRIIGFKV-SPDCLELRAWISIALED-YDGALRDVRALLTLDPSYM 620 (967)
Q Consensus 545 al~l~P~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~-~~~A~~~~~~al~l~p~~~ 620 (967)
++..+|++..+|..++.++...++ +++++..++++++.+| +..++..++.+....|. ++++++.+.++++.+|.|.
T Consensus 100 ~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~ 179 (331)
T 3dss_A 100 CLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 179 (331)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCH
T ss_pred HHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCH
Confidence 999999999999999999999994 9999999999999999 99999999999999999 6999999999999999999
Q ss_pred HHhhhhhhhhhHhhhHHHh--------------hchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHH
Q 002100 621 MFYGQLHGDNLVETLQPLV--------------QQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSL 686 (967)
Q Consensus 621 ~~~~~~~~~~~~~~l~~~~--------------~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~ 686 (967)
.++ ..++.+.... +.++++ +..+.+++..+|.+..+|+.+..
T Consensus 180 SAW------~~R~~ll~~l~~~~~~~~~~~~~~~~~~eE------------------le~~~~ai~~~P~d~SaW~Y~r~ 235 (331)
T 3dss_A 180 SSW------HYRSCLLPQLHPQPDSGPQGRLPENVLLKE------------------LELVQNAFFTDPNDQSAWFYHRW 235 (331)
T ss_dssp HHH------HHHHHHHHHHSCCC------CCCHHHHHHH------------------HHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHH------HHHHHHHHHhhhccccccccccchHHHHHH------------------HHHHHHHHHhCCCCHHHHHHHHH
Confidence 999 5556666555 334444 99999999999999999975555
Q ss_pred HHHHh-----------cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH---HcCChHHHHHHHHHHHhcccchHHH
Q 002100 687 LLLRL-----------NSQKAAMRSLRLARNYSTSEHEKLVYEGWILY---DTGHREEALAKAEESISIQRSFEAF 748 (967)
Q Consensus 687 ~~~~~-----------g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~---~~g~~~eA~~~~~~al~~~p~~~~~ 748 (967)
++... +.+++++..++++++..|++.-.+..++.+.. ..|..++....+.+.+++||....+
T Consensus 236 ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~ 311 (331)
T 3dss_A 236 LLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 311 (331)
T ss_dssp HHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhH
Confidence 55544 56899999999999999998544444433322 3578889999999999999965533
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.58 E-value=2.7e-14 Score=154.33 Aligned_cols=168 Identities=13% Similarity=0.040 Sum_probs=154.7
Q ss_pred CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhh
Q 002100 549 DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLH 627 (967)
Q Consensus 549 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 627 (967)
-|.+..+++.+|..+...|++++|+..|++++..+| ++.+++.+|.++...|++++|+..+++++..+|+.....
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~---- 188 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQG---- 188 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHH----
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHH----
Confidence 489999999999999999999999999999999999 899999999999999999999999999999999765444
Q ss_pred hhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 002100 628 GDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNY 707 (967)
Q Consensus 628 ~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~ 707 (967)
...+..+...++.+.| +..++++++.+|+++.+++.+|.++...|++++|+..|+++++.
T Consensus 189 --~~~~~~l~~~~~~~~a------------------~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 189 --LVAQIELLXQAADTPE------------------IQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp --HHHHHHHHHHHTSCHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHhhcccCcc------------------HHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 4445556666666666 89999999999999999999999999999999999999999999
Q ss_pred CCch--hHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 708 STSE--HEKLVYEGWILYDTGHREEALAKAEESIS 740 (967)
Q Consensus 708 ~p~~--~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 740 (967)
+|++ ..++..++.++...|+.++|+..|++++.
T Consensus 249 ~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 249 DLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9998 88999999999999999999999999884
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.58 E-value=1.9e-13 Score=148.55 Aligned_cols=244 Identities=14% Similarity=0.118 Sum_probs=187.4
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcC-cHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHh-c-CHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEEN-KLAAAITEINRIIGFKV-SPDCLELRAWISIAL-E-DYDGALRDVRA 611 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~-g-~~~~A~~~~~~ 611 (967)
++|+..++++|.++|++..+|..++.++...+ .++++++.+++++..+| +..++..++++.... + ++++++..+.+
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 78999999999999999999999999999999 59999999999999999 999999999999998 8 99999999999
Q ss_pred HHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 002100 612 LLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRL 691 (967)
Q Consensus 612 al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~ 691 (967)
+++.+|.+..++ ..++.+....+.++.+. ...+ ..+++.+.++++.+|.+..+|..++.++...
T Consensus 151 ~L~~dpkNy~AW------~~R~wvl~~l~~~~~~~-----~~~~-----~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 151 SLLPDPKNYHTW------AYLHWLYSHFSTLGRIS-----EAQW-----GSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HTSSCTTCHHHH------HHHHHHHHHHHHTTCCC-----HHHH-----HHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred HHHhCCCCHHHH------HHHHHHHHHhccccccc-----hhhH-----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 999999999999 66777777777777110 0000 0139999999999999999999999999998
Q ss_pred cC-------HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHH----HHHHHHHHHhcccchHHHHHHHHHhhhcCC
Q 002100 692 NS-------QKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREE----ALAKAEESISIQRSFEAFFLKAYALADSSL 760 (967)
Q Consensus 692 g~-------~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~e----A~~~~~~al~~~p~~~~~~~~~~~la~~~~ 760 (967)
+. +++++..+++++..+|++..+|.++..++...|+... +.--+ -+..+++..+
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------------- 279 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPY-TASKLNPDIE-------------- 279 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGG-TC----------------------
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccc-ccccccccch--------------
Confidence 87 7999999999999999999999999999988776410 00000 0000011100
Q ss_pred CCCchHHHHHHHHHHhcCCC------CCCchHHHHHHhHHHHHhcccHHHHHHHHHHHh-ccCcHH
Q 002100 761 NPESSAYVIQLLEEALRCPS------DGLRKGQALNNLGSVYVDCEKLDLAADCYMNAL-NIKHTR 819 (967)
Q Consensus 761 ~~~~~~~a~~~le~~~~~~~------~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al-~~~~~~ 819 (967)
.+.+.+.+... .......++..++.+|.+.|+.++|+++|+... +.++.+
T Consensus 280 ---------~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir 336 (349)
T 3q7a_A 280 ---------TVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMR 336 (349)
T ss_dssp ---------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred ---------hHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHH
Confidence 01111111111 113455677788888888888888888888876 456554
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.57 E-value=8.4e-14 Score=151.39 Aligned_cols=241 Identities=13% Similarity=0.064 Sum_probs=193.9
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCchHHhhhhhhhhh
Q 002100 554 YPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE-DYDGALRDVRALLTLDPSYMMFYGQLHGDNL 631 (967)
Q Consensus 554 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 631 (967)
.++.++..+....+..++|++.+++++.++| +..++..++.+...++ .+++++..+.+++..+|++..++ +.
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW------~h 128 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVW------HH 128 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHH------HH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHH------HH
Confidence 3444555556666777899999999999999 9999999999999999 59999999999999999999999 66
Q ss_pred HhhhHHHh-h-chhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHH--------HHHHHH
Q 002100 632 VETLQPLV-Q-QWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQK--------AAMRSL 701 (967)
Q Consensus 632 ~~~l~~~~-~-~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~--------~A~~~l 701 (967)
++.+.... + +++++ +..+.++++.+|.+..+|..++.++...+.++ +++..+
T Consensus 129 R~wlL~~l~~~~~~~E------------------L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~ 190 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSE------------------IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWC 190 (349)
T ss_dssp HHHHHHHHCCSCCHHH------------------HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHH
Confidence 67777766 5 66666 99999999999999999999999999999888 999999
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHcCC-------hHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHH
Q 002100 702 RLARNYSTSEHEKLVYEGWILYDTGH-------REEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEE 774 (967)
Q Consensus 702 ~~al~~~p~~~~a~~~lg~~~~~~g~-------~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~ 774 (967)
+++++.+|.+..+|.+++.++...++ ++++++.+++++.++|++.
T Consensus 191 ~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~---------------------------- 242 (349)
T 3q7a_A 191 NEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNV---------------------------- 242 (349)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCH----------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCH----------------------------
Confidence 99999999999999999999999987 7999999999999999877
Q ss_pred HhcCCCCCCchHHHHHHhHHHHHhcccH--------------------HHHHHHHHHHhc--------cCcHHHHHHHHH
Q 002100 775 ALRCPSDGLRKGQALNNLGSVYVDCEKL--------------------DLAADCYMNALN--------IKHTRAHQGLAR 826 (967)
Q Consensus 775 ~~~~~~~~~~~~~a~~~lg~~~~~~g~~--------------------~~A~~~~~~Al~--------~~~~~a~~~la~ 826 (967)
.+|+.+..++...|.. .+-.+.....+. +....++.-||.
T Consensus 243 ------------SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d 310 (349)
T 3q7a_A 243 ------------SAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLAD 310 (349)
T ss_dssp ------------HHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHH
Confidence 5666655555554432 122222222222 234458999999
Q ss_pred HHHHhCCHHHHHHHHHHHH-HHccCCHHHHHHH
Q 002100 827 VYHLKNQRKAAYDEMTKLI-EKARNNASAYEKR 858 (967)
Q Consensus 827 ~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~ 858 (967)
+|...|+.++|.+.++.+. +.+|-....|..+
T Consensus 311 ~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 311 SFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 9999999999999999886 4466544444433
No 122
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.55 E-value=1.8e-14 Score=143.35 Aligned_cols=156 Identities=10% Similarity=-0.023 Sum_probs=140.1
Q ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc---
Q 002100 787 QALNNLGSVYVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY--- 861 (967)
Q Consensus 787 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~--- 861 (967)
..+..+|..+...|++++|+..|+++++ +++..++..+|.++...|++++|+..++++++..| ++..+...+..
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH 85 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence 4678889999999999999999999998 55667999999999999999999999999999999 77766554421
Q ss_pred --CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHcCChHHHHH
Q 002100 862 --CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL---QLLHLRAAFHDSMGDHLHTQR 936 (967)
Q Consensus 862 --~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~---~~~~~~a~~~~~~g~~~~A~~ 936 (967)
.+..+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++ .++..+|.++..+|+.++|+.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 234458999999999999999999999999999999999999999999999973 489999999999999999999
Q ss_pred HHHHHHh
Q 002100 937 DCEAALC 943 (967)
Q Consensus 937 ~~~~al~ 943 (967)
.|+++|.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999975
No 123
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.54 E-value=5.4e-11 Score=142.17 Aligned_cols=424 Identities=10% Similarity=-0.012 Sum_probs=257.5
Q ss_pred ChHHHHHHHHHHHHhCchh--HHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhhC
Q 002100 472 EYKDAQNWFKAAVEAGHIY--SLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATELD 549 (967)
Q Consensus 472 ~y~~A~~~f~~al~~~~~~--a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~ 549 (967)
...+-+..|++++..+|.. .+..++..... .+ +.+.+...|++++...
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~---------------------------~~---~~~~aR~vyEraL~~f 96 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVS---------------------------LK---QWKQVYETFDKLHDRF 96 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHH---------------------------TT---CHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHh---------------------------cC---cHHHHHHHHHHHHHHC
Confidence 3556677889999998844 34433332211 12 3378888999999999
Q ss_pred CCCchhHHHHHHHHHhcCc---HHHHHHHHHHHhccC---CChhHHHHHHHHHHHhcCH----HHH----HHHHHHHHHh
Q 002100 550 PTLSYPYKYRAILLVEENK---LAAAITEINRIIGFK---VSPDCLELRAWISIALEDY----DGA----LRDVRALLTL 615 (967)
Q Consensus 550 P~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~----~~A----~~~~~~al~l 615 (967)
|.....|...+......++ ++.+...|++++... |+.+.|..........++. +++ ...|+.++..
T Consensus 97 P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~ 176 (679)
T 4e6h_A 97 PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK 176 (679)
T ss_dssp TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999998 6788777776666555553 333 4677777764
Q ss_pred ----CCCchHHhhhhhhhhhHhh----hHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChH--HHHHHH
Q 002100 616 ----DPSYMMFYGQLHGDNLVET----LQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSL--LRFRQS 685 (967)
Q Consensus 616 ----~p~~~~~~~~~~~~~~~~~----l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~--~~~~~g 685 (967)
+|+....|..... +.... -....++.+.+ -..|.+++.. |.... +|....
T Consensus 177 vG~~d~~s~~iW~~Yi~-f~~~~~~~~~~eeq~~~~~~------------------R~iy~raL~i-P~~~~~~~w~~Y~ 236 (679)
T 4e6h_A 177 CAIFEPKSIQFWNEYLH-FLEHWKPVNKFEEQQRVQYI------------------RKLYKTLLCQ-PMDCLESMWQRYT 236 (679)
T ss_dssp TTTTCSSCHHHHHHHHH-HHHTCCCCSHHHHHHHHHHH------------------HHHHHHHTTS-CCSSHHHHHHHHH
T ss_pred hCcccccchHHHHHHHH-HHHhccccCcHHHHhHHHHH------------------HHHHHHHHhC-ccHHHHHHHHHHH
Confidence 6666666632100 00000 00111222233 4556666643 33211 110000
Q ss_pred -------------HHHHHhcCHHHHHHHHHHHHh------c-CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccch
Q 002100 686 -------------LLLLRLNSQKAAMRSLRLARN------Y-STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSF 745 (967)
Q Consensus 686 -------------~~~~~~g~~~~A~~~l~~al~------~-~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 745 (967)
.+--...+|..|...++..-. . .|....... ...+=.........+..+.+.+..
T Consensus 237 ~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~-~~~~p~~~~~~~~ql~lW~~yi~f---- 311 (679)
T 4e6h_A 237 QWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT-ESNLPKPNEYDVQQLLIWLEWIRW---- 311 (679)
T ss_dssp HHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC-TTTSCCTTCCCHHHHHHHHHHHHH----
T ss_pred HHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch-hccCCCCchhHHHHHHHHHHHHHH----
Confidence 000111233333333322110 0 010000000 000000000000111111111100
Q ss_pred HHHHHHHHHhhhcCC-CCC---chHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHH-HHHHHHhccC--cH
Q 002100 746 EAFFLKAYALADSSL-NPE---SSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAA-DCYMNALNIK--HT 818 (967)
Q Consensus 746 ~~~~~~~~~la~~~~-~~~---~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~-~~~~~Al~~~--~~ 818 (967)
-.... ..+ ...++..++++++.... .....|...+......|+.++|. ..|++|+... ..
T Consensus 312 ----------Ek~~~~~l~~~~~~~Rv~~~Ye~aL~~~p---~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~ 378 (679)
T 4e6h_A 312 ----------ESDNKLELSDDLHKARMTYVYMQAAQHVC---FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA 378 (679)
T ss_dssp ----------HHTCTTCCCHHHHHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH
T ss_pred ----------HHhCCccccchhhHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH
Confidence 00000 000 01223334444443322 23488999999999999999997 9999999844 44
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----------cC-----------CHHHHHHHHcc----CChHHHHHHHH
Q 002100 819 RAHQGLARVYHLKNQRKAAYDEMTKLIEKA-----------RN-----------NASAYEKRSEY----CDRDMAKSDLS 872 (967)
Q Consensus 819 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~-----------p~-----------~~~~~~~~~~~----~~~~~A~~~l~ 872 (967)
..+..++......|+++.|.+.|+++++.. |. ...+|.....+ ++.+.|...|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 578889999999999999999999999863 32 23355555533 78899999999
Q ss_pred Hhhcc-CCCCchHHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--
Q 002100 873 MATQL-DPMRTYPYRYRAAVLMDDH-KEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPN-- 947 (967)
Q Consensus 873 ~al~l-~p~~~~~~~~la~~~~~~g-~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-- 947 (967)
+|++. .+.....|...|.+..+.+ +++.|.+.|+++++..|+. ..+...+.+....|+.+.|...|++|+...|+
T Consensus 459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 99988 4455677777777777765 4999999999999999984 46667888889999999999999999999983
Q ss_pred -chhHHHHHHHHHhhhh
Q 002100 948 -HTDTLELYDKATERVN 963 (967)
Q Consensus 948 -~~~~l~l~~r~~~~~~ 963 (967)
...++..+.+.+...+
T Consensus 539 ~~~~lw~~~~~fE~~~G 555 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVG 555 (679)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 5667777777766554
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.54 E-value=2.4e-14 Score=133.79 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=105.5
Q ss_pred HhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHH
Q 002100 544 TATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMF 622 (967)
Q Consensus 544 ~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 622 (967)
++..++|+.+.++..+|..++..|+|++|++.|+++++++| ++.++..+|.+|..+|++++|+..|+++++++|++..+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34567888889999999999999999999999999999999 89999999999999999999999999999999999988
Q ss_pred hhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHH
Q 002100 623 YGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLL 687 (967)
Q Consensus 623 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~ 687 (967)
+ +.+|.++...+++++| +..|+++++++|++..++..++.+
T Consensus 84 ~------~~lg~~~~~~~~~~~A------------------~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 84 Y------IRKAACLVAMREWSKA------------------QRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp H------HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred H------HHHHHHHHHCCCHHHH------------------HHHHHHHHHHCcCCHHHHHHHHHh
Confidence 8 7889999999999998 889999999999988888777665
No 125
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.53 E-value=1e-13 Score=149.90 Aligned_cols=169 Identities=15% Similarity=0.091 Sum_probs=157.4
Q ss_pred C-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccc
Q 002100 584 V-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIG 662 (967)
Q Consensus 584 p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~ 662 (967)
| +.+.++.+|..+...|++++|+..|+++++.+|++..++ +.++.++...+++++|
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~------~~la~~~~~~g~~~~A----------------- 170 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIG------LLLAETLIALNRSEDA----------------- 170 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHH------HHHHHHHHHTTCHHHH-----------------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHH------HHHHHHHHHCCCHHHH-----------------
Confidence 7 788999999999999999999999999999999999998 8889999999999999
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 002100 663 SLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQ 742 (967)
Q Consensus 663 al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 742 (967)
+..+++++..+|+........+..+...++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+
T Consensus 171 -~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 171 -EAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp -HHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -HHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 8999999999998777777888889999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc
Q 002100 743 RSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN 814 (967)
Q Consensus 743 p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 814 (967)
|++. ...++.++|.++...|+.++|+..|++++.
T Consensus 250 p~~~--------------------------------------~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 250 LTAA--------------------------------------DGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp TTGG--------------------------------------GGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccc--------------------------------------cchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9652 127899999999999999999999999874
No 126
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.52 E-value=3.4e-13 Score=138.60 Aligned_cols=169 Identities=12% Similarity=-0.013 Sum_probs=151.1
Q ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHccCCHHHHHHHHcc-
Q 002100 787 QALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKN----QRKAAYDEMTKLIEKARNNASAYEKRSEY- 861 (967)
Q Consensus 787 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~~~~~- 861 (967)
.+++++|.+|...+++++|+.+|+++++.++..+++.||.+|.. + ++++|+.+|+++++ +.++.+++.+|..
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y 95 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVL 95 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999998 7 99999999999965 5788999998832
Q ss_pred -------CChHHHHHHHHHhhccCC--CCchHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 002100 862 -------CDRDMAKSDLSMATQLDP--MRTYPYRYRAAVLMD----DHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSM 928 (967)
Q Consensus 862 -------~~~~~A~~~l~~al~l~p--~~~~~~~~la~~~~~----~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~ 928 (967)
+++++|+..|+++++..| .++.+++++|.+|.. .+++++|+.+|+++++..+++.+++.+|.+|...
T Consensus 96 ~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g 175 (212)
T 3rjv_A 96 VNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQG 175 (212)
T ss_dssp TCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHC
T ss_pred HcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcC
Confidence 689999999999999988 458999999999999 8999999999999999955567899999999864
Q ss_pred -C-----ChHHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 002100 929 -G-----DHLHTQRDCEAALCLDPNHTDTLELYDKATE 960 (967)
Q Consensus 929 -g-----~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~ 960 (967)
| |+++|+.+|+++.+. ++++....+.++++
T Consensus 176 ~gg~~~~d~~~A~~~~~~A~~~--g~~~A~~~l~~l~~ 211 (212)
T 3rjv_A 176 EKGFIEPNKQKALHWLNVSCLE--GFDTGCEEFDRISK 211 (212)
T ss_dssp BTTTBCCCHHHHHHHHHHHHHH--TCHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHhhc
Confidence 3 999999999999987 56677777777653
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.52 E-value=8.6e-14 Score=130.02 Aligned_cols=121 Identities=16% Similarity=0.084 Sum_probs=108.9
Q ss_pred HHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhc
Q 002100 578 RIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWS 656 (967)
Q Consensus 578 ~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~ 656 (967)
++..++| ..+++..+|..|+..|+|++|+..|+++++++|++..++ ..++.++..++++++|
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~~~~~~~~~~~~~~A----------- 66 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILY------SNRAACLTKLMEFQRA----------- 66 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCHHHH-----------
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------HHHhhHHHhhccHHHH-----------
Confidence 4556888 788999999999999999999999999999999999988 7889999999999999
Q ss_pred cccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 002100 657 SVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWIL 722 (967)
Q Consensus 657 ~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~ 722 (967)
+..+.++++.+|.++.+++.+|.++..+|++++|+..|+++++++|++.+++..++.++
T Consensus 67 -------~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 67 -------LDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp -------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred -------HHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999988888764
No 128
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.52 E-value=1.3e-13 Score=150.59 Aligned_cols=147 Identities=14% Similarity=0.023 Sum_probs=87.1
Q ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHhcc----Cc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCC------H
Q 002100 787 QALNNLGSVYVDCEKLDLAADCYMNALNI----KH----TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNN------A 852 (967)
Q Consensus 787 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~~----~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 852 (967)
.++.++|.+|..+|++++|+.+|++++++ +. ..++.++|.+|.. |++++|+..|+++++..|.. .
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 45666666666666666666666666652 11 1255566666666 66666666666666665532 2
Q ss_pred HHHHHHHc----cCChHHHHHHHHHhhccCCCC------chHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh----H--
Q 002100 853 SAYEKRSE----YCDRDMAKSDLSMATQLDPMR------TYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL----Q-- 916 (967)
Q Consensus 853 ~~~~~~~~----~~~~~~A~~~l~~al~l~p~~------~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~----~-- 916 (967)
.++..+|. .+++++|+..|++++++.|.+ ..++..+|.++...|++++|+..|++++ ..|.. .
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~ 234 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCA 234 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHH
Confidence 33444442 155555555555555554433 2356777888888888888888888888 87762 1
Q ss_pred HHHHHHHHHHHcCChHHHHH
Q 002100 917 LLHLRAAFHDSMGDHLHTQR 936 (967)
Q Consensus 917 ~~~~~a~~~~~~g~~~~A~~ 936 (967)
.+..++..+ ..|+.+.+..
T Consensus 235 ~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 235 ALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHH-HhcCHHHHHH
Confidence 344445544 4566554444
No 129
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.51 E-value=2.7e-13 Score=148.04 Aligned_cols=205 Identities=12% Similarity=0.012 Sum_probs=120.3
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHh-cCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVE-ENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
++|...++++.+..+.. ++. .+++++|+..|+++ |.+|...|++++|+..|.++++
T Consensus 8 ~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~al~ 64 (307)
T 2ifu_A 8 SEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA-------------AVAFKNAKQLEQAKDAYLQEAE 64 (307)
T ss_dssp HHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666655532 111 35666666666654 4566666777777777777666
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCC------ChHHHHHHHHHH
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPG------KSLLRFRQSLLL 688 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~------~~~~~~~~g~~~ 688 (967)
+.+..............++.++...++|++| +..|++++++.+. ....+..+|.+|
T Consensus 65 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A------------------~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~ 126 (307)
T 2ifu_A 65 AHANNRSLFHAAKAFEQAGMMLKDLQRMPEA------------------VQYIEKASVMYVENGTPDTAAMALDRAGKLM 126 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGG------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCCHHHH------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 6443211111111113444555555555555 5555555444221 123556677777
Q ss_pred HHhcCHHHHHHHHHHHHhcCCch------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCC
Q 002100 689 LRLNSQKAAMRSLRLARNYSTSE------HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNP 762 (967)
Q Consensus 689 ~~~g~~~~A~~~l~~al~~~p~~------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~ 762 (967)
.. |++++|+..|++++++.|.. ..++.++|.++..+|++++|+..|++++.+.|+..
T Consensus 127 ~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------------- 189 (307)
T 2ifu_A 127 EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME---------------- 189 (307)
T ss_dssp TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------------
T ss_pred Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----------------
Confidence 77 77777777777777765542 45677777777777777777777777776665322
Q ss_pred CchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc
Q 002100 763 ESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH 817 (967)
Q Consensus 763 ~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~ 817 (967)
..+....++.++|.++..+|++++|+.+|++++ ..+
T Consensus 190 ------------------~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 190 ------------------NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred ------------------ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 000112466677777777777777777777777 544
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.49 E-value=4.8e-14 Score=135.94 Aligned_cols=115 Identities=8% Similarity=-0.014 Sum_probs=92.9
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccch
Q 002100 666 VVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSF 745 (967)
Q Consensus 666 ~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 745 (967)
.+.++++.+|++...++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 35567778888888888888888888888888888888888888888888888888888888888888888888888865
Q ss_pred HHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHH
Q 002100 746 EAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRA 820 (967)
Q Consensus 746 ~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a 820 (967)
. .+++++|.+|..+|++++|+.+|+++++..+...
T Consensus 104 ~----------------------------------------~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 104 Y----------------------------------------TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp C----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred c----------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 5 6788888888888888888888888888655443
No 131
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.49 E-value=3.2e-13 Score=161.06 Aligned_cols=162 Identities=12% Similarity=0.031 Sum_probs=138.7
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
+.++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+| +..++..+|.+|..+|++++|+..|+++
T Consensus 4 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 83 (568)
T 2vsy_A 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQA 83 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 448999999999999999999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHh-
Q 002100 613 LTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRL- 691 (967)
Q Consensus 613 l~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~- 691 (967)
++++|++..++ ..++.++...+++++| +..++++++.+|.+..++..+|.++..+
T Consensus 84 l~~~p~~~~~~------~~la~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 84 SDAAPEHPGIA------LWLGHALEDAGQAEAA------------------AAAYTRAHQLLPEEPYITAQLLNWRRRLC 139 (568)
T ss_dssp HHHCTTCHHHH------HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 99999999888 7889999999999999 9999999999999999999999999999
Q ss_pred --cCHHHHHHHHHHHHhcCCchhHHHHHHH
Q 002100 692 --NSQKAAMRSLRLARNYSTSEHEKLVYEG 719 (967)
Q Consensus 692 --g~~~~A~~~l~~al~~~p~~~~a~~~lg 719 (967)
|++++|+..++++++.+|+....+..++
T Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 140 DWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred ccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999999999999999999888887776
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.47 E-value=6e-15 Score=163.33 Aligned_cols=180 Identities=9% Similarity=-0.004 Sum_probs=160.7
Q ss_pred HHHHHHHHH----hHhhCCCCchhHHHHHHHHH------------hcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHH
Q 002100 536 KEKMMDLNT----ATELDPTLSYPYKYRAILLV------------EENKLAAAITEINRIIGFKV-SPDCLELRAWISIA 598 (967)
Q Consensus 536 ~~A~~~~~~----al~l~P~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~ 598 (967)
++|+..++. ++.+.|.. +|..+|.... .++++++|+..+++++..+| ...++..+|.++..
T Consensus 82 e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~ 159 (336)
T 1p5q_A 82 ERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFK 159 (336)
T ss_dssp HHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888 88888886 4555554432 56788889999999888888 88999999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCc---------------hHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccch
Q 002100 599 LEDYDGALRDVRALLTLDPSY---------------MMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGS 663 (967)
Q Consensus 599 ~g~~~~A~~~~~~al~l~p~~---------------~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~a 663 (967)
.|++++|+..|++++.++|++ ..++ .+++.++...++|++|
T Consensus 160 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~------~nla~~~~~~g~~~~A------------------ 215 (336)
T 1p5q_A 160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH------LNLAMCHLKLQAFSAA------------------ 215 (336)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHH------HHHHHHHHHTTCHHHH------------------
T ss_pred CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHH------HHHHHHHHHcCCHHHH------------------
Confidence 999999999999999999998 3555 7889999999999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHH-HHHHHHHHhc
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEA-LAKAEESISI 741 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA-~~~~~~al~~ 741 (967)
+..+.++++.+|.++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|++.+..
T Consensus 216 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 216 IESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 5567777644
No 133
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.47 E-value=1.2e-12 Score=134.59 Aligned_cols=187 Identities=16% Similarity=0.047 Sum_probs=124.7
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhc----CHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALE----DYDGALRDVRA 611 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g----~~~~A~~~~~~ 611 (967)
.+|+..|+++.+. .++.+++.+|.+|...+++++|+..|+++++.. ++.+++.+|.+|.. + ++++|+..|++
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 3455556666553 455566666666666666666666666655421 45555555555555 4 55555555555
Q ss_pred HHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH-
Q 002100 612 LLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLR- 690 (967)
Q Consensus 612 al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~- 690 (967)
+++ +.++.+++.+|.+|..
T Consensus 79 A~~------------------------------------------------------------~g~~~a~~~Lg~~y~~g 98 (212)
T 3rjv_A 79 AVE------------------------------------------------------------AGSKSGEIVLARVLVNR 98 (212)
T ss_dssp HHH------------------------------------------------------------TTCHHHHHHHHHHHTCG
T ss_pred HHH------------------------------------------------------------CCCHHHHHHHHHHHHcC
Confidence 432 2344455556666655
Q ss_pred ---hcCHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCC
Q 002100 691 ---LNSQKAAMRSLRLARNYST--SEHEKLVYEGWILYD----TGHREEALAKAEESISIQRSFEAFFLKAYALADSSLN 761 (967)
Q Consensus 691 ---~g~~~~A~~~l~~al~~~p--~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~ 761 (967)
.+++++|+..|+++.+..| .++.+++.+|.+|.. .+++++|+.+|+++++. +.+.
T Consensus 99 ~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~--------------- 162 (212)
T 3rjv_A 99 QAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTG--------------- 162 (212)
T ss_dssp GGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTT---------------
T ss_pred CCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCH---------------
Confidence 6788888888888888887 457888888888888 78888888888888876 3222
Q ss_pred CCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc-c-----cHHHHHHHHHHHhccCcHHHHHHHHHH
Q 002100 762 PESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC-E-----KLDLAADCYMNALNIKHTRAHQGLARV 827 (967)
Q Consensus 762 ~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~-g-----~~~~A~~~~~~Al~~~~~~a~~~la~~ 827 (967)
.+++++|.+|... | ++++|+.+|++|.+.++..+...++.+
T Consensus 163 -------------------------~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~l 209 (212)
T 3rjv_A 163 -------------------------YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRI 209 (212)
T ss_dssp -------------------------HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5778888888754 2 788899999888888887776666654
No 134
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.47 E-value=4.5e-13 Score=159.78 Aligned_cols=157 Identities=10% Similarity=-0.031 Sum_probs=133.7
Q ss_pred cCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhh
Q 002100 566 ENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQ 644 (967)
Q Consensus 566 ~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~ 644 (967)
.|++++|++.|+++++.+| +..++..+|.++...|++++|+..|+++++++|++..++ ..++.++...+++++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV------ARLGRVRWTQQRHAE 75 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHH------HHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHCCCHHH
Confidence 4789999999999999999 899999999999999999999999999999999999988 788999999999999
Q ss_pred HhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 002100 645 ADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYD 724 (967)
Q Consensus 645 A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~ 724 (967)
| +..++++++.+|.+...++.+|.++...|++++|+..|+++++.+|++..++..+|.++..
T Consensus 76 A------------------~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 137 (568)
T 2vsy_A 76 A------------------AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR 137 (568)
T ss_dssp H------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred H------------------HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred c---CChHHHHHHHHHHHhcccchH
Q 002100 725 T---GHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 725 ~---g~~~eA~~~~~~al~~~p~~~ 746 (967)
+ |++++|+..++++++.+|+..
T Consensus 138 ~~~~g~~~~A~~~~~~al~~~p~~~ 162 (568)
T 2vsy_A 138 LCDWRALDVLSAQVRAAVAQGVGAV 162 (568)
T ss_dssp TTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred hhccccHHHHHHHHHHHHhcCCccc
Confidence 9 999999999999999999653
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.45 E-value=1e-12 Score=138.25 Aligned_cols=211 Identities=9% Similarity=-0.080 Sum_probs=166.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhh-hhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHH
Q 002100 591 LRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHG-DNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHH 669 (967)
Q Consensus 591 ~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~-~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~ 669 (967)
..|.-+ ..+++..|.+.|.+++.++|+...+|....+ --.-+.+.....+..++ +..+.+
T Consensus 12 ~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a------------------~~~~~~ 72 (282)
T 4f3v_A 12 ESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRN------------------FGQLSG 72 (282)
T ss_dssp HHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGG------------------TTHHHH
T ss_pred HHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHH------------------HHHHHH
Confidence 334444 4789999999999999999999999832100 00004455555555555 677788
Q ss_pred HHhcCCCChH---------------------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCCh
Q 002100 670 MLANDPGKSL---------------------LRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHR 728 (967)
Q Consensus 670 ~l~~~p~~~~---------------------~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~ 728 (967)
.+++.|.... ++...+.++...|+|++|.+.|+.++...|++. +.+.+|.++++.+++
T Consensus 73 ~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~ 151 (282)
T 4f3v_A 73 SVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERW 151 (282)
T ss_dssp TTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCH
T ss_pred HhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCH
Confidence 8887775433 334477889999999999999999999999998 999999999999999
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHH
Q 002100 729 EEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADC 808 (967)
Q Consensus 729 ~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~ 808 (967)
++|+..|+++....+.. ....+++++|.++..+|++++|+.+
T Consensus 152 ~dA~~~l~~a~~~~d~~--------------------------------------~~~~a~~~LG~al~~LG~~~eAl~~ 193 (282)
T 4f3v_A 152 TDVIDQVKSAGKWPDKF--------------------------------------LAGAAGVAHGVAAANLALFTEAERR 193 (282)
T ss_dssp HHHHHHHTTGGGCSCHH--------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhccCCcc--------------------------------------cHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999777543211 0125899999999999999999999
Q ss_pred HHHHhccC-----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc
Q 002100 809 YMNALNIK-----HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE 860 (967)
Q Consensus 809 ~~~Al~~~-----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 860 (967)
|++++.-. ...+++.+|.++..+|+.++|...|++++..+|+ ..++..+..
T Consensus 194 l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 194 LTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 99998633 3358999999999999999999999999999999 888777763
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.45 E-value=2.6e-13 Score=146.13 Aligned_cols=153 Identities=11% Similarity=-0.004 Sum_probs=88.7
Q ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHhccCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCH-----HHHHHHH
Q 002100 787 QALNNLGSVYVDCEKLDLAADCYMNALNIKH--TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNA-----SAYEKRS 859 (967)
Q Consensus 787 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~~ 859 (967)
.+++++|.+|...|++++|+..|+++++.++ ..+++.+|.++..+|++++|+..|+++++.+|++. .++...
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~- 117 (281)
T 2c2l_A 39 VYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL- 117 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-
Confidence 4455555555555555555555555555322 23555555555555555555555555555555431 111111
Q ss_pred ccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHc-CChHHHHHH
Q 002100 860 EYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ-LLHLRAAFHDSM-GDHLHTQRD 937 (967)
Q Consensus 860 ~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~-~~~~~a~~~~~~-g~~~~A~~~ 937 (967)
...++...........|.+..+...++.++ .|++++|++.++++++.+|+.. ....++.++... +.+++|.+.
T Consensus 118 ---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~ 192 (281)
T 2c2l_A 118 ---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDEL 192 (281)
T ss_dssp ---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 111222223333445677777777777655 5889999999999999988854 444455555555 678888888
Q ss_pred HHHHHhcC
Q 002100 938 CEAALCLD 945 (967)
Q Consensus 938 ~~~al~~~ 945 (967)
|+++.+..
T Consensus 193 f~~a~~~~ 200 (281)
T 2c2l_A 193 FSQVDEKR 200 (281)
T ss_dssp HHHSSCTT
T ss_pred HHhhhccc
Confidence 88887643
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.45 E-value=1.1e-13 Score=133.51 Aligned_cols=114 Identities=11% Similarity=-0.070 Sum_probs=68.2
Q ss_pred HHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHH
Q 002100 574 TEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLY 652 (967)
Q Consensus 574 ~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~ 652 (967)
..++++++++| ++++++.+|.++...|++++|+..|++++.++|+++.+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~------------------------------ 72 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY------------------------------ 72 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH------------------------------
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------------------------------
Confidence 34455555566 55566666666666666666666666655555555544
Q ss_pred hhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHH
Q 002100 653 DRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEAL 732 (967)
Q Consensus 653 ~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~ 732 (967)
|+.+|.++..+|++++|+..|+++++++|+++.+++++|.+|..+|++++|+
T Consensus 73 ----------------------------~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~ 124 (151)
T 3gyz_A 73 ----------------------------IMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAK 124 (151)
T ss_dssp ----------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHH
T ss_pred ----------------------------HHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 4555555555666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhcccch
Q 002100 733 AKAEESISIQRSF 745 (967)
Q Consensus 733 ~~~~~al~~~p~~ 745 (967)
..|++++++.|+.
T Consensus 125 ~~~~~al~l~~~~ 137 (151)
T 3gyz_A 125 ECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHCCCH
T ss_pred HHHHHHHHhCCCH
Confidence 6666666666543
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=8.8e-14 Score=164.18 Aligned_cols=185 Identities=12% Similarity=0.149 Sum_probs=170.5
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCc----------HHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc--CH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENK----------LAAAITEINRIIGFKV-SPDCLELRAWISIALE--DY 602 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g--~~ 602 (967)
++|+..++++++++|++..+|..++.++...++ +++|++.+++++..+| +..+|..++++....+ ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 789999999999999999999999999999998 9999999999999999 9999999999999999 77
Q ss_pred HHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhh-chhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH
Q 002100 603 DGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQ-QWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR 681 (967)
Q Consensus 603 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~-~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~ 681 (967)
++|++.+.++++++|.+..+| ..++.+....+ .++++ ++.+.++++.+|.+..+|
T Consensus 126 ~~el~~~~k~l~~d~~N~~aW------~~R~~~l~~l~~~~~~e------------------l~~~~~~I~~~p~n~saW 181 (567)
T 1dce_A 126 ARELELCARFLEADERNFHCW------DYRRFVAAQAAVAPAEE------------------LAFTDSLITRNFSNYSSW 181 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTCCCHHHH------------------HHHHHTTTTTTCCCHHHH
T ss_pred HHHHHHHHHHHhhccccccHH------HHHHHHHHHcCCChHHH------------------HHHHHHHHHHCCCCccHH
Confidence 999999999999999999999 66777877777 66666 999999999999999999
Q ss_pred HHHHHHHHHh--------------cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHH------------HHHHH
Q 002100 682 FRQSLLLLRL--------------NSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREE------------ALAKA 735 (967)
Q Consensus 682 ~~~g~~~~~~--------------g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~e------------A~~~~ 735 (967)
..++.++..+ +.+++|++.+.+++..+|++..+|+++++++...+++++ |+..|
T Consensus 182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f 261 (567)
T 1dce_A 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCF 261 (567)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEe
Confidence 9999999885 678999999999999999999999999999999998776 56667
Q ss_pred HHHHhcccc
Q 002100 736 EESISIQRS 744 (967)
Q Consensus 736 ~~al~~~p~ 744 (967)
.+++.++|.
T Consensus 262 ~~~i~~~~~ 270 (567)
T 1dce_A 262 SRPLTVGSR 270 (567)
T ss_dssp EEEECTTBT
T ss_pred ccceecccc
Confidence 777777763
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.44 E-value=2.8e-13 Score=145.83 Aligned_cols=96 Identities=17% Similarity=0.198 Sum_probs=57.3
Q ss_pred chhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc
Q 002100 522 VGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE 600 (967)
Q Consensus 522 ~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g 600 (967)
.|..+...+.| ++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++| +..+++.+|.+|..+|
T Consensus 10 ~g~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 10 QGNRLFVGRKY---PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp HHHHHHHTTCH---HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCH---HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34444444444 6666666666666666666666666666666666666666666666666 5566666666666666
Q ss_pred CHHHHHHHHHHHHHhCCCch
Q 002100 601 DYDGALRDVRALLTLDPSYM 620 (967)
Q Consensus 601 ~~~~A~~~~~~al~l~p~~~ 620 (967)
++++|+..|+++++++|++.
T Consensus 87 ~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 87 SYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCccch
Confidence 66666666666666655543
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.43 E-value=5.5e-14 Score=155.58 Aligned_cols=145 Identities=11% Similarity=0.099 Sum_probs=130.8
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---------------hHHHHHHHHHHHHcCCh
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE---------------HEKLVYEGWILYDTGHR 728 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~---------------~~a~~~lg~~~~~~g~~ 728 (967)
+..+.++++.+|.....+..+|.++...|++++|+..|+++++..|++ ..++.++|.++..+|++
T Consensus 133 ~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~ 212 (336)
T 1p5q_A 133 KESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 212 (336)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred cchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 666777777788889999999999999999999999999999999998 58999999999999999
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHH
Q 002100 729 EEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADC 808 (967)
Q Consensus 729 ~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~ 808 (967)
++|+..|+++++++|++. .+++++|.+|..+|++++|+.+
T Consensus 213 ~~A~~~~~~al~~~p~~~----------------------------------------~a~~~lg~~~~~~g~~~~A~~~ 252 (336)
T 1p5q_A 213 SAAIESCNKALELDSNNE----------------------------------------KGLSRRGEAHLAVNDFELARAD 252 (336)
T ss_dssp HHHHHHHHHHHHHCTTCH----------------------------------------HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcH----------------------------------------HHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999766 7999999999999999999999
Q ss_pred HHHHhccC--cHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHc
Q 002100 809 YMNALNIK--HTRAHQGLARVYHLKNQRKAA-YDEMTKLIEKA 848 (967)
Q Consensus 809 ~~~Al~~~--~~~a~~~la~~~~~~g~~~~A-~~~~~~al~~~ 848 (967)
|+++++.+ ...++..++.++..+|++++| ...|++++...
T Consensus 253 ~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 253 FQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999854 456999999999999999998 55777776643
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.43 E-value=2e-13 Score=143.63 Aligned_cols=186 Identities=12% Similarity=0.039 Sum_probs=164.8
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHH-------HHHHHhcCcHHHHHHHHHHHhccCC-Ch-------------------
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYR-------AILLVEENKLAAAITEINRIIGFKV-SP------------------- 586 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p-~~------------------- 586 (967)
+...|...|.++++++|+...+|..+ +.++...++..+++..+.+.+++.| ..
T Consensus 21 d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~ 100 (282)
T 4f3v_A 21 SEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTS 100 (282)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSS
T ss_pred CHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCC
Confidence 66999999999999999999999999 8999999999999999999999877 22
Q ss_pred --hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchH
Q 002100 587 --DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSL 664 (967)
Q Consensus 587 --~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al 664 (967)
++...++.++...|+|++|.+.|..++...|++. .. +.++.++...++|++| +
T Consensus 101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~------~~~a~l~~~~~r~~dA------------------~ 155 (282)
T 4f3v_A 101 PLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VA------WMKAVVYGAAERWTDV------------------I 155 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HH------HHHHHHHHHTTCHHHH------------------H
T ss_pred HhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HH------HHHHHHHHHcCCHHHH------------------H
Confidence 3445688999999999999999999999999877 65 8889999999999999 7
Q ss_pred HHHHHHHhcC-CCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Cc-hhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 665 AVVHHMLAND-PGK-SLLRFRQSLLLLRLNSQKAAMRSLRLARNYS--TS-EHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 665 ~~~~~~l~~~-p~~-~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~--p~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
..+.++.... |.. ..+++.+|.++..+|++++|+..|++++... |. ..++++++|.++..+|+.++|...|++++
T Consensus 156 ~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 156 DQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777666542 211 3588999999999999999999999998654 65 67899999999999999999999999999
Q ss_pred hcccc
Q 002100 740 SIQRS 744 (967)
Q Consensus 740 ~~~p~ 744 (967)
..+|+
T Consensus 236 a~~P~ 240 (282)
T 4f3v_A 236 TTHPE 240 (282)
T ss_dssp HHSCC
T ss_pred hcCCc
Confidence 99997
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.42 E-value=2.7e-13 Score=130.56 Aligned_cols=127 Identities=14% Similarity=-0.023 Sum_probs=95.8
Q ss_pred HHHHHHhccCcHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchH
Q 002100 807 DCYMNALNIKHTR--AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYP 884 (967)
Q Consensus 807 ~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~ 884 (967)
..|+++++.++.. +++.+|.++...|++++|+..|+++++ ++|+++.+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------------------~~p~~~~~ 57 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV------------------------------LDHYDSRF 57 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------HCTTCHHH
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH------------------------------cCcccHHH
Confidence 3456666655443 566666666666666666666555554 55566777
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 002100 885 YRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVN 963 (967)
Q Consensus 885 ~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~ 963 (967)
|..+|.++...|++++|+..|+++++++|+ +.+++.+|.++..+|++++|+..|+++++++|++++...+..+++...+
T Consensus 58 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 137 (148)
T 2vgx_A 58 FLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE 137 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence 888888899999999999999999999888 4688889999999999999999999999998888777666666655443
No 143
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.40 E-value=7.7e-13 Score=127.80 Aligned_cols=106 Identities=17% Similarity=0.189 Sum_probs=87.7
Q ss_pred EEEEE-cCeEEEehhHHHhccCHHHHHhhcC-CCC-CCccceEEeccCCCCHHHHHHHHHhHcCCC--------------
Q 002100 258 MSFCI-GNDEIRCVRYKIASLSRPFRTMLYG-GFI-ESRREKVNFSQNGISVEAMRAAEEFSRTKM-------------- 320 (967)
Q Consensus 258 v~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~-~~~-e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~-------------- 320 (967)
|+|+. +|+.|.+||.+ |++|+||++||.+ ++. |+....|.|++ |+..+|+.|++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~--V~~~iL~kViey~~~h~~~~~~~~~~~~~~~ 79 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPN--VNAAILKKVIQWCTHHKDDPPPPEDDENKEK 79 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTT--SCHHHHHHHHHHHHHTTTCCC----------
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCC--ccHHHHHHHHHHHHHcCcCCCCccccccccc
Confidence 77765 89999999999 8999999999998 777 77778999976 99999999999999988
Q ss_pred ------------CCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCC--ChhhHHHHHH
Q 002100 321 ------------LDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVS--DIEDAVMLIE 367 (967)
Q Consensus 321 ------------~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~--~~~n~~~~~~ 367 (967)
+ .++.+++.+|+.+|++++++.|.+.|.++++..+. +++.+-.++.
T Consensus 80 ~~~~i~~wD~~F~-~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~ 139 (159)
T 2ast_A 80 RTDDIPVWDQEFL-KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN 139 (159)
T ss_dssp -CCCCCHHHHHHT-CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTT
T ss_pred chhhhhHHHHHHH-cCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 6 68899999999999999999999999999988886 2444444433
No 144
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.40 E-value=1.7e-13 Score=130.58 Aligned_cols=129 Identities=12% Similarity=0.058 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCH
Q 002100 819 RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKE 898 (967)
Q Consensus 819 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~ 898 (967)
+.+.++|..++..|++++|+..|+++|+.+|+++.. .++...|.+..+|.++|.++.+.|++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~------------------~a~~~~~~~a~a~~n~g~al~~Lgr~ 73 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE------------------EAFDHAGFDAFCHAGLAEALAGLRSF 73 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT------------------SCCCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch------------------hhhhhccchHHHHHHHHHHHHHCCCH
Confidence 367788889999999999999999999999874321 12233344556999999999999999
Q ss_pred HHHHHHHHHHHhc-------CCCh-HHH----HHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhhhc
Q 002100 899 AEAIAELSRAIAF-------KPDL-QLL----HLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVNEQ 965 (967)
Q Consensus 899 ~eAi~~~~kal~~-------~p~~-~~~----~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~~~ 965 (967)
++|+..|+++|++ +|+. .+| +++|.++..+|++++|+..|+++++++|++..+..-+.++++.++.+
T Consensus 74 ~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~ 152 (159)
T 2hr2_A 74 DEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDR 152 (159)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999 9995 588 99999999999999999999999999999988877777777666543
No 145
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.39 E-value=9.7e-12 Score=132.49 Aligned_cols=244 Identities=9% Similarity=-0.013 Sum_probs=185.1
Q ss_pred HHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHh
Q 002100 466 VMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTA 545 (967)
Q Consensus 466 ~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~a 545 (967)
-.|-.|+|..++....+.-..++......+.|++..+|++... . .-.+...+......|.. ..|+..+++.
T Consensus 22 n~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~-~~~~~~~a~~~la~~~~-~~a~~~l~~l 92 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ-------D-PTSKLGKVLDLYVQFLD-TKNIEELENL 92 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC-------C-SSSTTHHHHHHHHHHHT-TTCCHHHHHT
T ss_pred HHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC-------C-CCCHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence 4567899999998544322224466777788999999987531 1 11122222333333322 3388899999
Q ss_pred HhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC---ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----
Q 002100 546 TELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV---SPDCLELRAWISIALEDYDGALRDVRALLTLDPS---- 618 (967)
Q Consensus 546 l~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~---- 618 (967)
++..+....++..+|.++...|++++|++.+.+.+..+| +.+++...+.+++.+|+.+.|.+.+++..+.+|+
T Consensus 93 ~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~ 172 (310)
T 3mv2_B 93 LKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSG 172 (310)
T ss_dssp TTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccccc
Confidence 887766677788999999999999999999999999986 6889999999999999999999999999999994
Q ss_pred -chHHhhhhhhhhhHhhhHHHhh--chhhHhhHHHHHhhhccccccchHHHHHHHHhcCCC--ChHHHHHHHHHHHHhcC
Q 002100 619 -YMMFYGQLHGDNLVETLQPLVQ--QWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPG--KSLLRFRQSLLLLRLNS 693 (967)
Q Consensus 619 -~~~~~~~~~~~~~~~~l~~~~~--~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~--~~~~~~~~g~~~~~~g~ 693 (967)
+..... ..-+.+....+ ++.+| +..|+++.+..|. .+..+++ ++..+|+
T Consensus 173 ~d~~l~~-----Laea~v~l~~g~~~~q~A------------------~~~f~El~~~~p~~~~~~lLln---~~~~~g~ 226 (310)
T 3mv2_B 173 DNEMILN-----LAESYIKFATNKETATSN------------------FYYYEELSQTFPTWKTQLGLLN---LHLQQRN 226 (310)
T ss_dssp HHHHHHH-----HHHHHHHHHHTCSTTTHH------------------HHHHHHHHTTSCSHHHHHHHHH---HHHHHTC
T ss_pred chHHHHH-----HHHHHHHHHhCCccHHHH------------------HHHHHHHHHhCCCcccHHHHHH---HHHHcCC
Confidence 222220 12232333333 55555 9999999888887 3344444 8999999
Q ss_pred HHHHHHHHHHHHhc----------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 694 QKAAMRSLRLARNY----------STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 694 ~~~A~~~l~~al~~----------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
+++|...++.+++. +|++++++.++..+...+|+ +|.++++++.+.+|+++
T Consensus 227 ~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 227 IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 99999999988776 48899999999999999998 89999999999999887
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.37 E-value=1e-12 Score=125.52 Aligned_cols=127 Identities=13% Similarity=0.003 Sum_probs=96.1
Q ss_pred HHHHHHhccCcHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchH
Q 002100 807 DCYMNALNIKHTR--AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYP 884 (967)
Q Consensus 807 ~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~ 884 (967)
..|+++++.+|.. +++.+|.+++..|++++|+..|+++++ .+|+++.+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------------------~~p~~~~~ 54 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM------------------------------LDHYDARY 54 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------HCTTCHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH------------------------------hCCccHHH
Confidence 3455555554443 566666666666666666666555554 55667777
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 002100 885 YRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVN 963 (967)
Q Consensus 885 ~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~ 963 (967)
|..+|.++...|++++|+..|+++++++|+ +.+++.+|.++..+|++++|+..|+++++++|++++...+..++....+
T Consensus 55 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 134 (142)
T 2xcb_A 55 FLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE 134 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 888999999999999999999999999998 4688899999999999999999999999999988887777776665543
No 147
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.37 E-value=9.1e-12 Score=127.42 Aligned_cols=128 Identities=20% Similarity=0.157 Sum_probs=101.6
Q ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----C
Q 002100 787 QALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----C 862 (967)
Q Consensus 787 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~ 862 (967)
..++++|.++...|++++|+..|++++.+ ...++..+|.++...|++++|+..|+++++.+|++..++..+|.. +
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 56789999999999999999999999855 456999999999999999999999999999888877777776632 6
Q ss_pred ChHHHHHHHHHhhccCCCCc----------------hHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 002100 863 DRDMAKSDLSMATQLDPMRT----------------YPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL 915 (967)
Q Consensus 863 ~~~~A~~~l~~al~l~p~~~----------------~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~ 915 (967)
++++|+..|++++++.|.+. .++.++|.++...|++++|+..|+++++..|+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 77777777777777666655 666666777777777777777777777666664
No 148
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.35 E-value=2e-11 Score=113.68 Aligned_cols=131 Identities=23% Similarity=0.258 Sum_probs=93.2
Q ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChH
Q 002100 788 ALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRD 865 (967)
Q Consensus 788 a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 865 (967)
+++.+|.++...|++++|+..|+++++. +...++..+|.++...|++++|+..++++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--------------------- 61 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA--------------------- 61 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHH---------------------
Confidence 4555555555555555555555555542 22335555555555555555555555544
Q ss_pred HHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 866 MAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCL 944 (967)
Q Consensus 866 ~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 944 (967)
++.+|.+..++..+|.++...|++++|+..++++++..|. ..++..+|.++...|++++|...++++++.
T Consensus 62 ---------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 62 ---------LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp ---------HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ---------HHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 4455566677788889999999999999999999998887 458888999999999999999999999998
Q ss_pred CCCc
Q 002100 945 DPNH 948 (967)
Q Consensus 945 ~P~~ 948 (967)
+|++
T Consensus 133 ~~~~ 136 (136)
T 2fo7_A 133 DPRS 136 (136)
T ss_dssp STTC
T ss_pred CCCC
Confidence 8863
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.35 E-value=2.2e-12 Score=124.10 Aligned_cols=83 Identities=11% Similarity=-0.042 Sum_probs=41.2
Q ss_pred HHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 002100 541 DLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSY 619 (967)
Q Consensus 541 ~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 619 (967)
.|+++++++|++..+++.+|.+++..|++++|+..|++++..+| ++.+++.+|.++..+|++++|+..|++++.++|++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 34444555555555555555555555555555555555555555 44455555555555555555555555444444444
Q ss_pred hHHh
Q 002100 620 MMFY 623 (967)
Q Consensus 620 ~~~~ 623 (967)
+.++
T Consensus 89 ~~~~ 92 (148)
T 2vgx_A 89 PRFP 92 (148)
T ss_dssp THHH
T ss_pred chHH
Confidence 4433
No 150
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.35 E-value=9.5e-13 Score=155.35 Aligned_cols=189 Identities=12% Similarity=0.092 Sum_probs=169.9
Q ss_pred hcCc-HHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC----------HHHHHHHHHHHHHhCCCchHHhhhhhhhhhH
Q 002100 565 EENK-LAAAITEINRIIGFKV-SPDCLELRAWISIALED----------YDGALRDVRALLTLDPSYMMFYGQLHGDNLV 632 (967)
Q Consensus 565 ~~g~-~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 632 (967)
..+. .++|++.+++++.++| +..+|..++.++..+++ +++|++.+.++++.+|++..+| +.+
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW------~hR 113 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTW------HHR 113 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH------HHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHH------HHH
Confidence 3344 4688999999999999 89999999999999998 9999999999999999999999 777
Q ss_pred hhhHHHhh--chhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCC
Q 002100 633 ETLQPLVQ--QWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLN-SQKAAMRSLRLARNYST 709 (967)
Q Consensus 633 ~~l~~~~~--~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~l~~al~~~p 709 (967)
+.+....+ +|+++ +..+.++++.+|.+..+|..++.++...+ .++++++.+.++++.+|
T Consensus 114 ~w~l~~l~~~~~~~e------------------l~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p 175 (567)
T 1dce_A 114 CWLLSRLPEPNWARE------------------LELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 175 (567)
T ss_dssp HHHHHTCSSCCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred HHHHHHcccccHHHH------------------HHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC
Confidence 88888888 56777 99999999999999999999999999999 99999999999999999
Q ss_pred chhHHHHHHHHHHHHc--------------CChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHH
Q 002100 710 SEHEKLVYEGWILYDT--------------GHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEA 775 (967)
Q Consensus 710 ~~~~a~~~lg~~~~~~--------------g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~ 775 (967)
++..+|.+++.++... +.+++|++.+.+++.++|++.
T Consensus 176 ~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~----------------------------- 226 (567)
T 1dce_A 176 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ----------------------------- 226 (567)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCS-----------------------------
T ss_pred CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCc-----------------------------
Confidence 9999999999999885 567999999999999999776
Q ss_pred hcCCCCCCchHHHHHHhHHHHHhcccHHH------------HHHHHHHHhccCc
Q 002100 776 LRCPSDGLRKGQALNNLGSVYVDCEKLDL------------AADCYMNALNIKH 817 (967)
Q Consensus 776 ~~~~~~~~~~~~a~~~lg~~~~~~g~~~~------------A~~~~~~Al~~~~ 817 (967)
.+|+.++.++...+++++ |+.+|.+++.+++
T Consensus 227 -----------saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~ 269 (567)
T 1dce_A 227 -----------SAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGS 269 (567)
T ss_dssp -----------HHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTB
T ss_pred -----------cHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccc
Confidence 789999999988888766 6666777776554
No 151
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.35 E-value=2.3e-11 Score=113.30 Aligned_cols=133 Identities=15% Similarity=0.147 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHH
Q 002100 588 CLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVV 667 (967)
Q Consensus 588 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~ 667 (967)
+++.+|.++...|++++|+..++++++.+|++...+ ..++.++...+++++| +..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~~A------------------~~~~ 58 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW------YNLGNAYYKQGDYDEA------------------IEYY 58 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHHTCHHHH------------------HHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHH------HHHHHHHHHhcCHHHH------------------HHHH
Confidence 344555555555555555555555555555554444 3445555555555555 5555
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccc
Q 002100 668 HHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRS 744 (967)
Q Consensus 668 ~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 744 (967)
.++++..|..+..++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++..+|+
T Consensus 59 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 59 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 55555556666666667777778888888888888888888888888888888888888888888888888877763
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.34 E-value=2.4e-12 Score=122.82 Aligned_cols=118 Identities=10% Similarity=-0.094 Sum_probs=78.2
Q ss_pred HHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002100 540 MDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPS 618 (967)
Q Consensus 540 ~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 618 (967)
..|+++++++|++..+++.+|..++..|++++|+..|++++..+| ++.+++.+|.++..+|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 356667777777777777777777777777777777777777777 6777777777777777777777777777777777
Q ss_pred chHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH
Q 002100 619 YMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR 681 (967)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~ 681 (967)
++.++ +.++.++...+++++| +..|+++++.+|.++...
T Consensus 85 ~~~~~------~~lg~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 85 EPRFP------FHAAECHLQLGDLDGA------------------ESGFYSARALAAAQPAHE 123 (142)
T ss_dssp CTHHH------HHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHTCGGGH
T ss_pred CcHHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCCcchH
Confidence 66666 5556666666666665 555666665555554443
No 153
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.34 E-value=3.3e-11 Score=123.24 Aligned_cols=132 Identities=11% Similarity=0.112 Sum_probs=101.1
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhh
Q 002100 555 PYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVET 634 (967)
Q Consensus 555 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 634 (967)
.++.+|..+...|++++|+..|++++ +|++.++..+|.+|...|++++|+..|++++.++|++..++ ..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~lg~ 79 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAY------FQRGM 79 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHH------HHHHH
Confidence 35667777777777777777777774 44667777777777777777777777777777777777666 66677
Q ss_pred hHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh----------------HHHHHHHHHHHHhcCHHHHH
Q 002100 635 LQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS----------------LLRFRQSLLLLRLNSQKAAM 698 (967)
Q Consensus 635 l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~----------------~~~~~~g~~~~~~g~~~~A~ 698 (967)
++...+++++| +..+.++++..|.+. .+++.+|.++...|++++|+
T Consensus 80 ~~~~~~~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 141 (213)
T 1hh8_A 80 LYYQTEKYDLA------------------IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141 (213)
T ss_dssp HHHHTTCHHHH------------------HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHH------------------HHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence 77777777777 777777777666655 78888999999999999999
Q ss_pred HHHHHHHhcCCchh
Q 002100 699 RSLRLARNYSTSEH 712 (967)
Q Consensus 699 ~~l~~al~~~p~~~ 712 (967)
..|+++++.+|++.
T Consensus 142 ~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 142 EQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHTTCCSGG
T ss_pred HHHHHHHHcCcccc
Confidence 99999999888763
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.32 E-value=8.7e-12 Score=115.99 Aligned_cols=113 Identities=23% Similarity=0.239 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHH
Q 002100 820 AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEA 899 (967)
Q Consensus 820 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~ 899 (967)
.+..+|..++..|++++|+..|+++++ ++|+++.++.++|.++...|+++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~------------------------------~~p~~~~~~~~~a~~~~~~~~~~ 55 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIK------------------------------RAPEDARGYSNRAAALAKLMSFP 55 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH------------------------------hCCCChHHHHHHHHHHHHhcCHH
Confidence 556666666666666666666555554 55566788899999999999999
Q ss_pred HHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCchhHHHHHHHHHhhh
Q 002100 900 EAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLD------PNHTDTLELYDKATERV 962 (967)
Q Consensus 900 eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------P~~~~~l~l~~r~~~~~ 962 (967)
+|+..|+++++++|+ ..+++.+|.++..+|++++|+..|+++++++ |+++.+...+.++.+++
T Consensus 56 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 56 EAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 999999999999999 4599999999999999999999999999999 99999999998887654
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.31 E-value=4.8e-11 Score=129.15 Aligned_cols=103 Identities=15% Similarity=0.060 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHH---hcCCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLAR---NYSTSE----HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFL 750 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al---~~~p~~----~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 750 (967)
..++..+|.+|...|++++|+..|++++ +..|++ ..+++++|.+|..+|++++|+..+++++++.++..
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~---- 230 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN---- 230 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC----
Confidence 3467889999999999999999999999 445553 26899999999999999999999999997764211
Q ss_pred HHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHH-HHHHHHHhc
Q 002100 751 KAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLA-ADCYMNALN 814 (967)
Q Consensus 751 ~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A-~~~~~~Al~ 814 (967)
.....+.+++++|.+|...|++++| ..+|++|+.
T Consensus 231 ------------------------------~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 231 ------------------------------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp ------------------------------BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ------------------------------cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1223457899999999999999999 788999886
No 156
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.30 E-value=9.7e-12 Score=123.33 Aligned_cols=135 Identities=11% Similarity=0.119 Sum_probs=97.2
Q ss_pred HHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHH
Q 002100 796 YVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSM 873 (967)
Q Consensus 796 ~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~ 873 (967)
+...|++++|+..|+++++ ++...++..+|.++...|++++|+..|+++++.+|
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p------------------------ 75 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG------------------------ 75 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC------------------------
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------------------
Confidence 4556677777777777766 33445677777777777777766666666665555
Q ss_pred hhccCCCCchHHHHHHHH-HHhCCCH--HHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch
Q 002100 874 ATQLDPMRTYPYRYRAAV-LMDDHKE--AEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHT 949 (967)
Q Consensus 874 al~l~p~~~~~~~~la~~-~~~~g~~--~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~ 949 (967)
+++.++..+|.+ +...|++ ++|+..|+++++.+|+ ..+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 76 ------~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 76 ------ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp ------SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred ------CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 555667777877 7788888 8999999999988888 45888889999999999999999999999998887
Q ss_pred hHHHHHHHHHh
Q 002100 950 DTLELYDKATE 960 (967)
Q Consensus 950 ~~l~l~~r~~~ 960 (967)
....++..+..
T Consensus 150 ~~~~~~~~i~~ 160 (177)
T 2e2e_A 150 NRTQLVESINM 160 (177)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 76666555554
No 157
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.29 E-value=2.5e-13 Score=156.94 Aligned_cols=147 Identities=8% Similarity=0.015 Sum_probs=121.6
Q ss_pred hcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---------------hHHhhhhhh
Q 002100 565 EENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSY---------------MMFYGQLHG 628 (967)
Q Consensus 565 ~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~---------------~~~~~~~~~ 628 (967)
..+++++|+..|++++..+| ...++..+|.+++..|+|++|+..|+++++++|++ ..++
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~----- 320 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF----- 320 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHH-----
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHH-----
Confidence 44566667777766666666 67777777777777778888887788777777776 3455
Q ss_pred hhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 002100 629 DNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYS 708 (967)
Q Consensus 629 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~ 708 (967)
.+++.++..+++|++| +..+.++++.+|.+..+++++|.+|..+|++++|+..|+++++++
T Consensus 321 -~nla~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 321 -LNLAMCYLKLREYTKA------------------VECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp -HHHHHHHHHTTCHHHH------------------HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHhcCHHHH------------------HHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 7889999999999999 999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHH
Q 002100 709 TSEHEKLVYEGWILYDTGHREEALAKA 735 (967)
Q Consensus 709 p~~~~a~~~lg~~~~~~g~~~eA~~~~ 735 (967)
|++..++..++.++...+++++|.+..
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~~~~ 408 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERDRRI 408 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887543
No 158
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.28 E-value=5.2e-11 Score=128.88 Aligned_cols=176 Identities=11% Similarity=0.089 Sum_probs=142.1
Q ss_pred CCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-Ch------hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHH
Q 002100 550 PTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SP------DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMF 622 (967)
Q Consensus 550 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~------~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 622 (967)
|.....+...+..+...|+|++|++.+.++++..+ .. ..++.+|.++...|++++|+..+++++...+.....
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 33445567788899999999999999999998877 32 356778899999999999999999999876554322
Q ss_pred hhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHH---hcCCCCh----HHHHHHHHHHHHhcCHH
Q 002100 623 YGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHML---ANDPGKS----LLRFRQSLLLLRLNSQK 695 (967)
Q Consensus 623 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l---~~~p~~~----~~~~~~g~~~~~~g~~~ 695 (967)
+........+|.++...++|++| +..+.+++ +..|.+. .+++++|.+|..+|+++
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A------------------~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~ 213 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKG------------------IDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYE 213 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHH
Confidence 21122337889999999999999 88888888 4555543 58899999999999999
Q ss_pred HHHHHHHHHHhcCCc------hhHHHHHHHHHHHHcCChHHH-HHHHHHHHhccc
Q 002100 696 AAMRSLRLARNYSTS------EHEKLVYEGWILYDTGHREEA-LAKAEESISIQR 743 (967)
Q Consensus 696 ~A~~~l~~al~~~p~------~~~a~~~lg~~~~~~g~~~eA-~~~~~~al~~~p 743 (967)
+|+..++++++..++ ...+++++|.++..+|++++| ..++++++.+..
T Consensus 214 ~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 214 ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 999999999987643 267899999999999999999 888999996654
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.27 E-value=3.7e-11 Score=112.15 Aligned_cols=110 Identities=15% Similarity=0.156 Sum_probs=81.6
Q ss_pred HHHHHHhHHHHHhcccHHHHHHHHHHHhccCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCC
Q 002100 786 GQALNNLGSVYVDCEKLDLAADCYMNALNIKH--TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCD 863 (967)
Q Consensus 786 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 863 (967)
+.++.++|.+++..|+|++|+.+|++|++++| ..++.++|.+|..+|++++|++.++++++++|++...+..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~----- 82 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI----- 82 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH-----
Confidence 46788899999999999999999999988544 45888899999999999999999988888887533222211
Q ss_pred hHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHH
Q 002100 864 RDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLL 918 (967)
Q Consensus 864 ~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~ 918 (967)
..++.++|.++...|++++|++.|+++++..|+++..
T Consensus 83 ------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~ 119 (127)
T 4gcn_A 83 ------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELV 119 (127)
T ss_dssp ------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHH
T ss_pred ------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHH
Confidence 2345667777777777777777777777776665543
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.26 E-value=2.9e-11 Score=112.86 Aligned_cols=107 Identities=12% Similarity=0.117 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhh
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALAD 757 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~ 757 (967)
+..+..+|..+++.|+|++|+..|+++++++|+++.++.++|.+|..+|++++|+..++++++++|+..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~----------- 76 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR----------- 76 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc-----------
Confidence 456788999999999999999999999999999999999999999999999999999999999998543
Q ss_pred cCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc
Q 002100 758 SSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH 817 (967)
Q Consensus 758 ~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~ 817 (967)
......+.++.++|.++..+|++++|+++|+++++..+
T Consensus 77 ----------------------~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 77 ----------------------ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred ----------------------hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 01112346788899999999999999999999887443
No 161
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.26 E-value=3.9e-11 Score=117.16 Aligned_cols=125 Identities=16% Similarity=0.070 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHc--------cCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHH
Q 002100 820 AHQGLARVYHLKNQRKAAYDEMTKLIEKA--------RNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAV 891 (967)
Q Consensus 820 a~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~ 891 (967)
.+..+|..++..|++++|+..|+++++.. |.+.. ....+|.+..++.++|.+
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~nla~~ 72 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPE--------------------WVELDRKNIPLYANMSQC 72 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHH--------------------HHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHH--------------------HHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666652 22111 123457778899999999
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch-hHHHHHHHHHhhhhh
Q 002100 892 LMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHT-DTLELYDKATERVNE 964 (967)
Q Consensus 892 ~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~-~~l~l~~r~~~~~~~ 964 (967)
|.+.|++++|+..++++++++|+ ..+++.+|.+|..+|++++|+.+|+++++++|+++ .+...+.++.....+
T Consensus 73 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 73 YLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 46999999999999999999999999999999999 777777777766543
No 162
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.25 E-value=1.8e-10 Score=122.71 Aligned_cols=186 Identities=10% Similarity=0.056 Sum_probs=120.8
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYST--SEHEKLVYEGWILYDTGHREEALAKAEESISI 741 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p--~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 741 (967)
+..+++.++..+.....++.+|.++...|++++|++.+.+.+..+| ++.+++...+.++..+|+.+.|.+.+++..+.
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5666666655544455556677777777777777777777777665 66677777777777777777777777777666
Q ss_pred ccc-----hHHHH--HHHH-HhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHh
Q 002100 742 QRS-----FEAFF--LKAY-ALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNAL 813 (967)
Q Consensus 742 ~p~-----~~~~~--~~~~-~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 813 (967)
+|+ ..... ..+| .++. ..++...+..+++++....++ +.....+++ ++..+|++++|...++.++
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~---g~~~~q~A~~~f~El~~~~p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFAT---NKETATSNFYYYEELSQTFPT-WKTQLGLLN---LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH---TCSTTTHHHHHHHHHHTTSCS-HHHHHHHHH---HHHHHTCHHHHHHHHHHHH
T ss_pred CccccccchHHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhCCC-cccHHHHHH---HHHHcCCHHHHHHHHHHHH
Confidence 662 22111 1111 1111 123455566666666544332 112233444 7889999999999998776
Q ss_pred c------------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHH
Q 002100 814 N------------IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKR 858 (967)
Q Consensus 814 ~------------~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 858 (967)
+ ++++.++.+++.+...+|+ +|.++++++.+.+|+++.+.-..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~ 293 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ 293 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence 6 3455688888888888887 88899999999999888775443
No 163
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.25 E-value=1.2e-10 Score=126.10 Aligned_cols=172 Identities=15% Similarity=0.110 Sum_probs=124.3
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHhccCC-Chh------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhh
Q 002100 557 KYRAILLVEENKLAAAITEINRIIGFKV-SPD------CLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGD 629 (967)
Q Consensus 557 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~------~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 629 (967)
...+..+...|++++|+..+++++...+ .+. .+..+|.++...+++++|+..|++++.+.+.....+.
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~----- 153 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ----- 153 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH-----
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH-----
Confidence 3445666677777777777777776555 322 2334666666666777777777777665554322110
Q ss_pred hhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh---
Q 002100 630 NLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARN--- 706 (967)
Q Consensus 630 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~--- 706 (967)
...++..+|.+|..+|++++|+..|+++++
T Consensus 154 -----------------------------------------------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 186 (293)
T 3u3w_A 154 -----------------------------------------------NLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 023577889999999999999999999994
Q ss_pred ----cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCC
Q 002100 707 ----YSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDG 782 (967)
Q Consensus 707 ----~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~ 782 (967)
..+....+++++|.+|..+|++++|+..+++++++.+... ..
T Consensus 187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~----------------------------------~~ 232 (293)
T 3u3w_A 187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN----------------------------------SM 232 (293)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------------------------------BC
T ss_pred hcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC----------------------------------cH
Confidence 2233456889999999999999999999999998776321 12
Q ss_pred CchHHHHHHhHHHHHhccc-HHHHHHHHHHHhc
Q 002100 783 LRKGQALNNLGSVYVDCEK-LDLAADCYMNALN 814 (967)
Q Consensus 783 ~~~~~a~~~lg~~~~~~g~-~~~A~~~~~~Al~ 814 (967)
...+.+++++|.+|..+|+ +++|+.+|++|+.
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 2345789999999999994 6999999999886
No 164
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.24 E-value=2e-11 Score=120.97 Aligned_cols=87 Identities=9% Similarity=0.098 Sum_probs=43.3
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHH-HHHhcCH--HHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWI-SIALEDY--DGALRDVRA 611 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~-~~~~g~~--~~A~~~~~~ 611 (967)
++|+..++++++.+|+++.+++.+|.++...|++++|+..|++++..+| ++.++..+|.+ +...|++ ++|+..+++
T Consensus 27 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~ 106 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK 106 (177)
T ss_dssp CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 4555555555555555555555555555555555555555555555555 44445555554 4444444 444444444
Q ss_pred HHHhCCCchHH
Q 002100 612 LLTLDPSYMMF 622 (967)
Q Consensus 612 al~l~p~~~~~ 622 (967)
++..+|++..+
T Consensus 107 al~~~p~~~~~ 117 (177)
T 2e2e_A 107 ALALDSNEITA 117 (177)
T ss_dssp HHHHCTTCHHH
T ss_pred HHHhCCCcHHH
Confidence 44444444333
No 165
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.24 E-value=1.1e-10 Score=113.57 Aligned_cols=132 Identities=17% Similarity=0.152 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHH
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAV 666 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~ 666 (967)
..+..+|.++...|++++|+..|++++..+|++..++ ..++.++...++|++| +..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------~~~a~~~~~~~~~~~A------------------~~~ 69 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYY------GNRSLAYLRTECYGYA------------------LGD 69 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH------HHHHHHHHHTTCHHHH------------------HHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH------HHHHHHHHHcCCHHHH------------------HHH
Confidence 3455556666666666666666666666666655555 4555556666666665 566
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHH--HHHHHcCChHHHHHHHHHHHhcc
Q 002100 667 VHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEG--WILYDTGHREEALAKAEESISIQ 742 (967)
Q Consensus 667 ~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg--~~~~~~g~~~eA~~~~~~al~~~ 742 (967)
+.++++.+|.++..++.+|.++...|++++|+..|+++++.+|++..++..++ ..+...|++++|+..++++..+.
T Consensus 70 ~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 70 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 66666666666667777788888888888888888888888888877774444 44777888888888888776443
No 166
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.24 E-value=9e-11 Score=109.04 Aligned_cols=112 Identities=14% Similarity=0.108 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHH
Q 002100 588 CLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVV 667 (967)
Q Consensus 588 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~ 667 (967)
.+..+|..+...|++++|+..|+++++++|++..++ ..++.++...++|++| +..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~------~~~a~~~~~~~~~~~A------------------~~~~ 61 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGY------SNRAAALAKLMSFPEA------------------IADC 61 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCHHHH------------------HHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH------HHHHHHHHHhcCHHHH------------------HHHH
Confidence 344444444444444444444444444444444444 3344444444444444 4444
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------CchhHHHHHHHHHHH
Q 002100 668 HHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYS------TSEHEKLVYEGWILY 723 (967)
Q Consensus 668 ~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~------p~~~~a~~~lg~~~~ 723 (967)
.++++.+|.++.+++.+|.++..+|++++|+..|+++++.+ |++..++..++.+..
T Consensus 62 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 62 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 44444444445555556666666666666666666666666 666666665555543
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.23 E-value=8.3e-12 Score=126.49 Aligned_cols=156 Identities=8% Similarity=-0.088 Sum_probs=113.0
Q ss_pred HHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCch----------------HH
Q 002100 560 AILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYM----------------MF 622 (967)
Q Consensus 560 a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~----------------~~ 622 (967)
+......+++++|.+.++......+ ....+..+|..+...|+|++|+..|++++.+.|+++ .+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 4444555666666666655444444 566777788888888888888888888888777766 44
Q ss_pred hhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHH
Q 002100 623 YGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLR 702 (967)
Q Consensus 623 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~ 702 (967)
+ ..++.++...++|++| +..+.++++.+|.++.+++.+|.++..+|++++|+..|+
T Consensus 91 ~------~~la~~~~~~~~~~~A------------------~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 91 N------LNLATCYNKNKDYPKA------------------IDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp H------HHHHHHHHHTTCHHHH------------------HHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred H------HHHHHHHHHhcCHHHH------------------HHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4 6778888899999988 899999999999999999999999999999999999999
Q ss_pred HHHhcCCchhHHHHHHHHHHHHcCChHHHH-HHHHHHH
Q 002100 703 LARNYSTSEHEKLVYEGWILYDTGHREEAL-AKAEESI 739 (967)
Q Consensus 703 ~al~~~p~~~~a~~~lg~~~~~~g~~~eA~-~~~~~al 739 (967)
++++.+|++..++..++.++...++.+++. ..+.+.+
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999888888777 4444444
No 168
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.23 E-value=9.1e-11 Score=126.92 Aligned_cols=159 Identities=11% Similarity=-0.021 Sum_probs=129.9
Q ss_pred ChHHHHHHHHHhHhhCCCCch------hHHHHHHHHHhcCcHHHHHHHHHHHhccCC---C----hhHHHHHHHHHHHhc
Q 002100 534 SGKEKMMDLNTATELDPTLSY------PYKYRAILLVEENKLAAAITEINRIIGFKV---S----PDCLELRAWISIALE 600 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~----~~~~~~la~~~~~~g 600 (967)
++++|+..++++++..+..+. .+..+|.++...+++++|+..|++++...+ + ..++..+|.+|..+|
T Consensus 90 ~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 169 (293)
T 3u3w_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG 169 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC
Confidence 559999999999998876654 334588999999999999999999998654 2 347999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHH
Q 002100 601 DYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLL 680 (967)
Q Consensus 601 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~ 680 (967)
++++|+..|+++++.....+. ..+....+
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~---------------------------------------------------~~~~~~~~ 198 (293)
T 3u3w_A 170 YLKKGIDLFEQILKQLEALHD---------------------------------------------------NEEFDVKV 198 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSSC---------------------------------------------------CHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccc---------------------------------------------------chhHHHHH
Confidence 999999999999864211000 01223457
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCch------hHHHHHHHHHHHHcCC-hHHHHHHHHHHHhccc
Q 002100 681 RFRQSLLLLRLNSQKAAMRSLRLARNYSTSE------HEKLVYEGWILYDTGH-REEALAKAEESISIQR 743 (967)
Q Consensus 681 ~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~------~~a~~~lg~~~~~~g~-~~eA~~~~~~al~~~p 743 (967)
++++|.+|..+|++++|+..++++++..+.. +.+++.+|.++..+|+ +++|+..|++|+.+..
T Consensus 199 ~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999876443 7889999999999995 6999999999997654
No 169
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.23 E-value=1.3e-10 Score=117.43 Aligned_cols=169 Identities=15% Similarity=0.095 Sum_probs=127.8
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHH
Q 002100 688 LLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAY 767 (967)
Q Consensus 688 ~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~ 767 (967)
++..|++++|.+.++......+....++..+|.++...|++++|+..+++++.+.....
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------- 60 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--------------------- 60 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC---------------------
Confidence 35679999999966666554447788999999999999999999999999997543111
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc------Cc---HHHHHHHHHHHHHhCCHHHHH
Q 002100 768 VIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI------KH---TRAHQGLARVYHLKNQRKAAY 838 (967)
Q Consensus 768 a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~------~~---~~a~~~la~~~~~~g~~~~A~ 838 (967)
..+....++.++|.+|...|++++|+.+|+++++. ++ ..++.++|.++..+|++++|+
T Consensus 61 -------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 127 (203)
T 3gw4_A 61 -------------DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGAR 127 (203)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred -------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 11233478999999999999999999999999984 32 127889999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 839 DEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 839 ~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
..++++++..+..... .....++..+|.++...|++++|+..+++++++...
T Consensus 128 ~~~~~al~~~~~~~~~------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 128 QEYEKSLVYAQQADDQ------------------------VAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHTTCH------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccch------------------------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 9999998764421000 011344678899999999999999999998876443
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.22 E-value=1e-11 Score=143.46 Aligned_cols=142 Identities=14% Similarity=0.108 Sum_probs=130.2
Q ss_pred hHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C---------------hhHHHHHHHHHHH
Q 002100 535 GKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S---------------PDCLELRAWISIA 598 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~---------------~~~~~~la~~~~~ 598 (967)
+++|+..|+++++.+|+.+.++..+|..++..|+|++|+..|++++.++| + ..++.++|.+|..
T Consensus 250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 329 (457)
T 1kt0_A 250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK 329 (457)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888999999999999999999999999999999999999999999 5 5899999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh
Q 002100 599 LEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS 678 (967)
Q Consensus 599 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~ 678 (967)
+|+|++|+..|+++++++|++..++ +.++.++..+++|++| +..|.++++++|.+.
T Consensus 330 ~g~~~~A~~~~~~al~~~p~~~~a~------~~~g~a~~~~g~~~~A------------------~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSANEKGL------YRRGEAQLLMNEFESA------------------KGDFEKVLEVNPQNK 385 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHH------HHHHHHHHHTTCHHHH------------------HHHHHHHHTTC----
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHH------HHHHHHHHHccCHHHH------------------HHHHHHHHHhCCCCH
Confidence 9999999999999999999999998 8889999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHH
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRS 700 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~ 700 (967)
.++..++.++..++++++|.+.
T Consensus 386 ~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 386 AARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988864
No 171
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.21 E-value=1.8e-10 Score=112.18 Aligned_cols=131 Identities=15% Similarity=0.128 Sum_probs=107.4
Q ss_pred chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhh
Q 002100 553 SYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNL 631 (967)
Q Consensus 553 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 631 (967)
+..++.+|.+++..|++++|+..|++++..+| ++.++..+|.++...|++++|+..++++++.+|++..++ ..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------~~ 86 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY------YR 86 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH------HH
Confidence 35677888888888888888888888888888 788888888888888888888888888888888888777 67
Q ss_pred HhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHH--HHHHHHHHhcCHHHHHHHHHHHHhc
Q 002100 632 VETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRF--RQSLLLLRLNSQKAAMRSLRLARNY 707 (967)
Q Consensus 632 ~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~--~~g~~~~~~g~~~~A~~~l~~al~~ 707 (967)
++.++...+++++| +..+.++++.+|.+...+. .++..+...|++++|+..++++...
T Consensus 87 ~a~~~~~~~~~~~A------------------~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 87 RAASNMALGKFRAA------------------LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHTTCHHHH------------------HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 78888888888888 8888888888888877774 4444577889999999988876543
No 172
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.20 E-value=7.1e-11 Score=115.53 Aligned_cols=114 Identities=14% Similarity=0.089 Sum_probs=80.5
Q ss_pred CCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhh
Q 002100 550 PTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHG 628 (967)
Q Consensus 550 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~ 628 (967)
+..+..++.+|.+++..|+|++|+..|++++.++| ++.++..+|.+|..+|++++|+..|+++++++|++..++
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----- 82 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAW----- 82 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH-----
Confidence 44456677777777777777777777777777777 677777777777777777777777777777777777666
Q ss_pred hhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHH
Q 002100 629 DNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLL 687 (967)
Q Consensus 629 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~ 687 (967)
+.++.++...+++++| +..|.++++.+|++...++.++..
T Consensus 83 -~~lg~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 83 -SRLGLARFDMADYKGA------------------KEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp -HHHHHHHHHTTCHHHH------------------HHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred -HHHHHHHHHccCHHHH------------------HHHHHHHHHhCCCchHHHHHHHHH
Confidence 6667777777777777 677777777777766655554444
No 173
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.20 E-value=2.1e-11 Score=123.45 Aligned_cols=139 Identities=14% Similarity=0.108 Sum_probs=114.8
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-Ch----------------hHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SP----------------DCLELRAWISIA 598 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~----------------~~~~~la~~~~~ 598 (967)
+++.+.+....+..+..+..+..+|..++..|+|++|+..|++++...| ++ .++..+|.++..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 100 (198)
T 2fbn_A 21 GAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK 100 (198)
T ss_dssp -CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555566677788889999999999999999999998888 55 788889999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh
Q 002100 599 LEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS 678 (967)
Q Consensus 599 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~ 678 (967)
+|++++|+..++++++++|++..++ +.++.++...+++++| +..+.++++.+|.+.
T Consensus 101 ~~~~~~A~~~~~~al~~~p~~~~~~------~~lg~~~~~~~~~~~A------------------~~~~~~al~~~p~~~ 156 (198)
T 2fbn_A 101 NKDYPKAIDHASKVLKIDKNNVKAL------YKLGVANMYFGFLEEA------------------KENLYKAASLNPNNL 156 (198)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHH------HHHHHHHHHHTCHHHH------------------HHHHHHHHHHSTTCH
T ss_pred hcCHHHHHHHHHHHHHhCcccHHHH------HHHHHHHHHcccHHHH------------------HHHHHHHHHHCCCcH
Confidence 9999999999999999999888888 7788889999999888 888999999999998
Q ss_pred HHHHHHHHHHHHhcCHHHHH
Q 002100 679 LLRFRQSLLLLRLNSQKAAM 698 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~ 698 (967)
.++..++.++...++..++.
T Consensus 157 ~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 157 DIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888777766
No 174
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.19 E-value=3.4e-11 Score=105.49 Aligned_cols=81 Identities=27% Similarity=0.385 Sum_probs=66.1
Q ss_pred EEEEE-cCeEEEehhHHHhccCHHHHHhhcC--CCCCCccceEEeccCCCCHHHHHHHHHhHc-----C---CCCC--CC
Q 002100 258 MSFCI-GNDEIRCVRYKIASLSRPFRTMLYG--GFIESRREKVNFSQNGISVEAMRAAEEFSR-----T---KMLD--SF 324 (967)
Q Consensus 258 v~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~--~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y-----t---~~~~--~~ 324 (967)
|+++. +|++|.+||.+ |++|++|++||.+ .+.|+....|.|++ |++.+++.+++|+| + +.++ ++
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~--V~~~iL~kViey~~~h~~~~~~~~~i~~~~i 80 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFRE--IPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 80 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTT--SCHHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCC--CCHHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence 56654 89999999999 9999999999987 78888889999976 99999999999999 5 6663 38
Q ss_pred CHHHHHHHHHHhchhCh
Q 002100 325 DPRLVLELLSFANRFCC 341 (967)
Q Consensus 325 ~~~~~~~ll~~A~~~~~ 341 (967)
+++++.+|+.+|++++|
T Consensus 81 ~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 81 APEIALELLMAANFLDC 97 (97)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhhhCC
Confidence 89999999999999875
No 175
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.19 E-value=1.8e-10 Score=107.33 Aligned_cols=118 Identities=13% Similarity=0.055 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHH
Q 002100 586 PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLA 665 (967)
Q Consensus 586 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~ 665 (967)
..++..+|.++...|++++|+..|++++..+|++..++ ..++.++...+++++| +.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------~~la~~~~~~~~~~~A------------------~~ 71 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLY------SNRAACYTKLLEFQLA------------------LK 71 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHH------HHHHHHHTTTTCHHHH------------------HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH------HHHHHHHHHhccHHHH------------------HH
Confidence 34455555555555555555555555555555544444 4444445555555554 45
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCC
Q 002100 666 VVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGH 727 (967)
Q Consensus 666 ~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~ 727 (967)
.+.++++.+|.++..++.+|.++...|++++|+..|+++++.+|++..++..++.++..+|+
T Consensus 72 ~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 72 DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 55555555555555666677777777777777777777777777777777777777776653
No 176
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.18 E-value=1.5e-10 Score=107.96 Aligned_cols=121 Identities=15% Similarity=0.173 Sum_probs=101.3
Q ss_pred CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhh
Q 002100 549 DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLH 627 (967)
Q Consensus 549 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 627 (967)
.|....+++.+|.++...|++++|+..|++++..+| +..++..+|.++...|++++|+..++++++.+|++..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---- 87 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGY---- 87 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHH----
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHH----
Confidence 355667888888888888888888888888888888 788888888888888888888888888888888888777
Q ss_pred hhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcC
Q 002100 628 GDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNS 693 (967)
Q Consensus 628 ~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~ 693 (967)
..++.++...+++++| +..+.++++.+|.+..++..++.++..+|+
T Consensus 88 --~~la~~~~~~~~~~~A------------------~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 88 --TRKAAALEAMKDYTKA------------------MDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp --HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHhhHHHH------------------HHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 6778888888888888 888888888888888888888888877653
No 177
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.18 E-value=1.9e-10 Score=106.49 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHH
Q 002100 586 PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLA 665 (967)
Q Consensus 586 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~ 665 (967)
+..+..+|.++...|++++|+..|++++..+|++..++ ..++.++...+++++| +.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~~A------------------~~ 67 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYF------CNRAAAYSKLGNYAGA------------------VQ 67 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCHHHH------------------HH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHH------HHHHHHHHHhhchHHH------------------HH
Confidence 34445555555555555555555555555555544444 4444455555555555 45
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCCh
Q 002100 666 VVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHR 728 (967)
Q Consensus 666 ~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~ 728 (967)
.+.++++.+|.++..++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 68 DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 555555555555556666677777777777777777777777777777777777777776664
No 178
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.17 E-value=1.1e-10 Score=108.31 Aligned_cols=123 Identities=19% Similarity=0.219 Sum_probs=100.7
Q ss_pred hCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhh
Q 002100 548 LDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQL 626 (967)
Q Consensus 548 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 626 (967)
.+|.+...++.+|..+...|++++|+..|++++...| ++.++..+|.++...|++++|+..+++++..+|++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--- 83 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY--- 83 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH---
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHH---
Confidence 3455667788888888888888888888888888888 788888888888888888888888888888888887777
Q ss_pred hhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCH
Q 002100 627 HGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQ 694 (967)
Q Consensus 627 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~ 694 (967)
..++.++...+++++| +..+.++++.+|.++.++..++.++...|++
T Consensus 84 ---~~~~~~~~~~~~~~~A------------------~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 84 ---GRMGLALSSLNKHVEA------------------VAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp ---HHHHHHHHHTTCHHHH------------------HHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHhCCHHHH------------------HHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 6778888888888888 7888888888888888888888888877764
No 179
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.17 E-value=2.1e-10 Score=112.15 Aligned_cols=115 Identities=15% Similarity=0.095 Sum_probs=103.5
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchH
Q 002100 585 SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSL 664 (967)
Q Consensus 585 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al 664 (967)
+...++.+|.++...|+|++|+..|+++++++|++..++ ..++.++...++|++| +
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~l~~~~~~~g~~~~A------------------~ 65 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYL------SNRAAAYSASGQHEKA------------------A 65 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH------HHHHHHHHHTTCHHHH------------------H
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHH------HHHHHHHHHccCHHHH------------------H
Confidence 577899999999999999999999999999999998888 7888999999999999 8
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 002100 665 AVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILY 723 (967)
Q Consensus 665 ~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~ 723 (967)
..+.++++.+|.++.+++.+|.++..+|++++|+..|+++++++|++..+++..+....
T Consensus 66 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 66 EDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887777665443
No 180
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.17 E-value=1e-10 Score=111.47 Aligned_cols=102 Identities=14% Similarity=0.051 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-------hhH-----HHHHHHHHHHHcCChHHHHHHHHHHHhc----
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS-------EHE-----KLVYEGWILYDTGHREEALAKAEESISI---- 741 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~-------~~~-----a~~~lg~~~~~~g~~~eA~~~~~~al~~---- 741 (967)
...+..+|..+...|+|++|+..|+++++.+|+ +.. +|.++|.++..+|++++|+..|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 356788999999999999999999999999999 443 9999999999999999999999999998
Q ss_pred ---ccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHH----HHhHHHHHhcccHHHHHHHHHHHhc
Q 002100 742 ---QRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQAL----NNLGSVYVDCEKLDLAADCYMNALN 814 (967)
Q Consensus 742 ---~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~----~~lg~~~~~~g~~~~A~~~~~~Al~ 814 (967)
+|++. .+| +++|.++..+|++++|+.+|+++++
T Consensus 91 ~e~~pd~~----------------------------------------~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEG----------------------------------------KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHH----------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchH----------------------------------------HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88665 666 8889998888888888888888888
Q ss_pred cCcHH
Q 002100 815 IKHTR 819 (967)
Q Consensus 815 ~~~~~ 819 (967)
++|.+
T Consensus 131 l~p~d 135 (159)
T 2hr2_A 131 MIEER 135 (159)
T ss_dssp HHHHC
T ss_pred cCCCc
Confidence 66543
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.16 E-value=3.8e-10 Score=129.07 Aligned_cols=211 Identities=9% Similarity=-0.022 Sum_probs=163.6
Q ss_pred chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-Ch-----------------hHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 553 SYPYKYRAILLVEENKLAAAITEINRIIGFKV-SP-----------------DCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 553 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
|.+....|..+...|+|++|++.|.++++..| .. .++..+|.+|...|++++|++.+.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566778888899999999999999998877 21 3588999999999999999999999998
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc------CCCChHHHHHHHHHH
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN------DPGKSLLRFRQSLLL 688 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~------~p~~~~~~~~~g~~~ 688 (967)
..+..............++.++...+++++| +..+.+++.. .+....++..+|.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a------------------~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 145 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQ------------------IFVCEKSIEFAKREKRVFLKHSLSIKLATLH 145 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHH------------------HHHHHHHHHHHHHSSCCSSHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHH------------------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 8666544432222224556666666777777 6666665543 233456788999999
Q ss_pred HHhcCHHHHHHHHHHHHhc------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCC
Q 002100 689 LRLNSQKAAMRSLRLARNY------STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNP 762 (967)
Q Consensus 689 ~~~g~~~~A~~~l~~al~~------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~ 762 (967)
...|+|.+|+..+++++.. .+...+++..+|.++...|++++|...+++++.+.+...
T Consensus 146 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---------------- 209 (434)
T 4b4t_Q 146 YQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY---------------- 209 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----------------
T ss_pred HHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC----------------
Confidence 9999999999999998765 345578899999999999999999999999997665211
Q ss_pred CchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc
Q 002100 763 ESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN 814 (967)
Q Consensus 763 ~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 814 (967)
......+..+..+|.++...++|++|..+|.++++
T Consensus 210 -----------------~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 210 -----------------CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred -----------------CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 00112346788899999999999999999999987
No 182
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.16 E-value=3.4e-10 Score=129.49 Aligned_cols=210 Identities=11% Similarity=0.003 Sum_probs=167.7
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchh-----------------HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEH-----------------EKLVYEGWILYDTGHREEALAKAEESIS 740 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~-----------------~a~~~lg~~~~~~g~~~eA~~~~~~al~ 740 (967)
|......|.-+...|+|++|++.|.++++..|... .++..+|.+|...|++++|+..+++++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44566778889999999999999999999887643 3588999999999999999999999987
Q ss_pred cccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC----
Q 002100 741 IQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK---- 816 (967)
Q Consensus 741 ~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~---- 816 (967)
..+... .......+...+|.++...|++++|+.++++++...
T Consensus 84 ~~~~~~----------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 129 (434)
T 4b4t_Q 84 YMMQFA----------------------------------KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK 129 (434)
T ss_dssp HHHTSC----------------------------------HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHcc----------------------------------chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC
Confidence 665322 000111456778999999999999999999998721
Q ss_pred ----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 002100 817 ----HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVL 892 (967)
Q Consensus 817 ----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~ 892 (967)
...++..+|.+|...|++++|...+++++..... ..-.|....++..++.+|
T Consensus 130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~ 185 (434)
T 4b4t_Q 130 RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK------------------------LDDKPSLVDVHLLESKVY 185 (434)
T ss_dssp CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT------------------------SSCSTHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh------------------------cccchhHHHHHHHHHHHH
Confidence 2348889999999999999999999998875432 111234456788899999
Q ss_pred HhCCCHHHHHHHHHHHHhcCCC---h-----HHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 893 MDDHKEAEAIAELSRAIAFKPD---L-----QLLHLRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 893 ~~~g~~~eAi~~~~kal~~~p~---~-----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
...|++++|...+++++...+. + ..+...|.++...+++++|..+|.++++..
T Consensus 186 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 186 HKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 9999999999999999876432 1 266778999999999999999999998653
No 183
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.16 E-value=1.6e-10 Score=108.86 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=83.5
Q ss_pred CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 862 CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~ 940 (967)
+++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+ ..+++.+|.++..+|++++|+..|++
T Consensus 23 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 23 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444444444555556667788889999999999999999999999999998 45899999999999999999999999
Q ss_pred HHhcCCC-----chhHHHHHHHHHhhh
Q 002100 941 ALCLDPN-----HTDTLELYDKATERV 962 (967)
Q Consensus 941 al~~~P~-----~~~~l~l~~r~~~~~ 962 (967)
+++++|+ +..+...+.++..+.
T Consensus 103 a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 103 AYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 788888888877664
No 184
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.15 E-value=1.8e-10 Score=106.38 Aligned_cols=99 Identities=10% Similarity=0.003 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcC
Q 002100 680 LRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSS 759 (967)
Q Consensus 680 ~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~ 759 (967)
.++.+|..+.+.|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~------------- 85 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI------------- 85 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------------
Confidence 4678899999999999999999999999999999999999999999999999999999999999766
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH
Q 002100 760 LNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT 818 (967)
Q Consensus 760 ~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~ 818 (967)
.++.++|.+|...|++++|+..|+++++.+|.
T Consensus 86 ---------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 86 ---------------------------AVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ---------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 78899999999999999999999999886654
No 185
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.15 E-value=6.9e-10 Score=112.07 Aligned_cols=144 Identities=18% Similarity=0.144 Sum_probs=119.8
Q ss_pred CC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHh------cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 674 DP-GKSLLRFRQSLLLLRLNSQKAAMRSLRLARN------YSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 674 ~p-~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~------~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
+| ....++..+|.++...|++++|+..+++++. ..|....++..+|.++...|++++|+..+++++++.....
T Consensus 21 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 100 (203)
T 3gw4_A 21 HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP 100 (203)
T ss_dssp STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 44 6678899999999999999999999999998 5566678899999999999999999999999997633100
Q ss_pred HHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc----CcH----
Q 002100 747 AFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI----KHT---- 818 (967)
Q Consensus 747 ~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~----~~~---- 818 (967)
........++.++|.++...|++++|+.+|+++++. +..
T Consensus 101 ---------------------------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 101 ---------------------------------EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------------------------ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 000123468899999999999999999999999972 222
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002100 819 RAHQGLARVYHLKNQRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 819 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 850 (967)
.++..+|.++..+|++++|+..++++++....
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 26789999999999999999999999987653
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.13 E-value=1.2e-10 Score=113.58 Aligned_cols=114 Identities=18% Similarity=0.080 Sum_probs=92.7
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhh------------------CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATEL------------------DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV 584 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l------------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 584 (967)
|..+...+.| ++|+..|.+++++ +|.+..+|.++|.++..+|++++|+..+++++.++|
T Consensus 18 G~~~~~~~~~---~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 94 (162)
T 3rkv_A 18 GNELFVQKDY---KEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94 (162)
T ss_dssp HHHHHHTTCH---HHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHcCCH---HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence 4555555544 6666666666666 677889999999999999999999999999999999
Q ss_pred -ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCch-HHhhhhhhhhhHhhhHHHhhchhhH
Q 002100 585 -SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYM-MFYGQLHGDNLVETLQPLVQQWSQA 645 (967)
Q Consensus 585 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~~~~~~~~~~l~~~~~~~~~A 645 (967)
++.+++.+|.+|..+|++++|+..|+++++++|++. .+. ..+..+....+++.+.
T Consensus 95 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~------~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 95 TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVA------REMKIVTERRAEKKAD 151 (162)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHH------HHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHH------HHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999998 444 3445555555444443
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.13 E-value=6.9e-11 Score=130.68 Aligned_cols=157 Identities=8% Similarity=-0.067 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcC
Q 002100 454 WQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYC 533 (967)
Q Consensus 454 ~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~ 533 (967)
+..+..++.+|..++..|+|++|+.+|++++...|.... +...|+..++...+. ...+.++|.++..++.|
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~------~~~~~~~~~~~~~l~--~~~~~nla~~~~~~g~~- 246 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM------FQLYGKYQDMALAVK--NPCHLNIAACLIKLKRY- 246 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH------HTCCHHHHHHHHHHH--THHHHHHHHHHHTTTCC-
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh------hhhcccHHHHHHHHH--HHHHHHHHHHHHHcCCH-
Confidence 345677899999999999999999999999999886542 112233333333222 12456678888888877
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHH-HHHhcCHHHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWI-SIALEDYDGALRDVRA 611 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~-~~~~g~~~~A~~~~~~ 611 (967)
++|+..|+++++++|++..+|+++|.+|..+|++++|+..|++++.++| +..++..++.+ ....+..+++...|.+
T Consensus 247 --~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~ 324 (338)
T 2if4_A 247 --DEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKG 324 (338)
T ss_dssp --HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------
T ss_pred --HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 88999999988 4456778889999999
Q ss_pred HHHhCCCchH
Q 002100 612 LLTLDPSYMM 621 (967)
Q Consensus 612 al~l~p~~~~ 621 (967)
++...|++..
T Consensus 325 ~l~~~p~~~~ 334 (338)
T 2if4_A 325 IFKGKDEGGA 334 (338)
T ss_dssp ----------
T ss_pred hhCCCCCCCC
Confidence 9999998654
No 188
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.12 E-value=1.7e-10 Score=106.65 Aligned_cols=96 Identities=17% Similarity=0.159 Sum_probs=83.8
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALED 601 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~ 601 (967)
|..+...+.+ ++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++| ++.++..+|.++...|+
T Consensus 24 g~~~~~~g~~---~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 24 GLSMLKLANL---AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHTTCH---HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCH---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 4555566655 9999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCchH
Q 002100 602 YDGALRDVRALLTLDPSYMM 621 (967)
Q Consensus 602 ~~~A~~~~~~al~l~p~~~~ 621 (967)
+++|+..|+++++++|++..
T Consensus 101 ~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999998653
No 189
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.12 E-value=1e-09 Score=101.95 Aligned_cols=117 Identities=9% Similarity=-0.034 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHH
Q 002100 820 AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEA 899 (967)
Q Consensus 820 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~ 899 (967)
+++.+|.+++..|++++|+..|+++++..|++ |....+++.+|.++...|+++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------------------~~~~~~~~~lg~~~~~~~~~~ 56 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNG---------------------------VYTPNALYWLGESYYATRNFQ 56 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS---------------------------TTHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---------------------------cccHHHHHHHHHHHHHhccHH
Confidence 35667777777777777777777776665531 111268889999999999999
Q ss_pred HHHHHHHHHHhcCCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 002100 900 EAIAELSRAIAFKPDL----QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVN 963 (967)
Q Consensus 900 eAi~~~~kal~~~p~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~ 963 (967)
+|+..|+++++..|+. .+++.+|.++..+|++++|+..|++++..+|+++.+.....++.....
T Consensus 57 ~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 57 LAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 9999999999999984 479999999999999999999999999999999998888887776544
No 190
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.11 E-value=3.8e-10 Score=106.15 Aligned_cols=92 Identities=18% Similarity=0.125 Sum_probs=53.2
Q ss_pred hCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhh
Q 002100 548 LDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQL 626 (967)
Q Consensus 548 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 626 (967)
.+|.++..++.+|.+++..|++++|+..|++++..+| ++.++..+|.++..+|++++|+..++++++++|++..++
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--- 80 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH--- 80 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH---
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHH---
Confidence 3455556666666666666666666666666666666 566666666666666666666666666666655555444
Q ss_pred hhhhhHhhhHHHhhchhhH
Q 002100 627 HGDNLVETLQPLVQQWSQA 645 (967)
Q Consensus 627 ~~~~~~~~l~~~~~~~~~A 645 (967)
+.++.++...+++++|
T Consensus 81 ---~~l~~~~~~~~~~~~A 96 (137)
T 3q49_B 81 ---FFLGQCQLEMESYDEA 96 (137)
T ss_dssp ---HHHHHHHHHTTCHHHH
T ss_pred ---HHHHHHHHHHhhHHHH
Confidence 3444444444444444
No 191
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.11 E-value=1.4e-09 Score=98.49 Aligned_cols=112 Identities=16% Similarity=0.135 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCH
Q 002100 819 RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKE 898 (967)
Q Consensus 819 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~ 898 (967)
..+..+|.++...|++++|+..|+++++. +|.++.++..+|.++...|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------------------~~~~~~~~~~~a~~~~~~~~~ 54 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL------------------------------DPHNHVLYSNRSAAYAKKGDY 54 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH------------------------------CCCcHHHHHHHHHHHHhhccH
Confidence 35666677777777776666666666554 445567778888888889999
Q ss_pred HHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 002100 899 AEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATE 960 (967)
Q Consensus 899 ~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~ 960 (967)
++|+..++++++..|+ ..++..+|.++..+|++++|+..++++++.+|+++.+...+.++..
T Consensus 55 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 55 QKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 9999999999998887 5588889999999999999999999999999999888888777754
No 192
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.10 E-value=3e-08 Score=115.07 Aligned_cols=211 Identities=12% Similarity=-0.016 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHH
Q 002100 695 KAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEE 774 (967)
Q Consensus 695 ~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~ 774 (967)
+.....|++++...|..+..|...+..+...|+.++|...|++++.. |....... +|.... ..+ .....+..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~-~y~~~~---e~~---~~~~~l~~ 267 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL-YYGLVM---DEE---AVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH-HHHHHT---TCT---HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH-HHHhhc---chh---HHHHHHHH
Confidence 44566888888888888888888888888888888888888888888 75442211 111110 000 00000000
Q ss_pred HhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHH
Q 002100 775 ALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN-IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNAS 853 (967)
Q Consensus 775 ~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 853 (967)
.... ...+.+ .... ..+..+|...+......++.+.|...|.++ ...+....
T Consensus 268 ~~~~---------------------~~~~~~-----~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~ 320 (493)
T 2uy1_A 268 KYSM---------------------GEAESA-----EKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPH 320 (493)
T ss_dssp HTC------------------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHH
T ss_pred HHHh---------------------hccchh-----hhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChH
Confidence 0000 000000 0000 111235566666666666677777777777 32222344
Q ss_pred HHHHHHcc-----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 002100 854 AYEKRSEY-----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSM 928 (967)
Q Consensus 854 ~~~~~~~~-----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~ 928 (967)
.|...+.. ++.+.|...|+.+++..|+.+..+...+......|+.+.|...|+++.+ ....+.....+-...
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k---~~~lw~~~~~fE~~~ 397 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK---TSRMWDSMIEYEFMV 397 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC---BHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHC
Confidence 44444421 3577777777777777777776666667777777888888888888721 234555556666677
Q ss_pred CChHHHHHHHHHHHh
Q 002100 929 GDHLHTQRDCEAALC 943 (967)
Q Consensus 929 g~~~~A~~~~~~al~ 943 (967)
|+.+.+...+++++.
T Consensus 398 G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 398 GSMELFRELVDQKMD 412 (493)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888887887774
No 193
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.10 E-value=1.2e-09 Score=100.11 Aligned_cols=120 Identities=13% Similarity=0.107 Sum_probs=98.3
Q ss_pred CCCC-chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhh
Q 002100 549 DPTL-SYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQL 626 (967)
Q Consensus 549 ~P~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 626 (967)
+|.. ..+++.+|.++...|++++|++.|++++...| +..++..+|.++...|++++|+..+++++..+|++...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--- 80 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW--- 80 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH---
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHH---
Confidence 4544 67788888888889999999999999888888 788888889999889999999999999888888887777
Q ss_pred hhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhc
Q 002100 627 HGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLN 692 (967)
Q Consensus 627 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g 692 (967)
..++.++...+++++| +..+.++++.+|.++..+..++.++...|
T Consensus 81 ---~~la~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 81 ---YNLGNAYYKQGDYDEA------------------IEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp ---HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHhcCHHHH------------------HHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 6778888888888888 88888888888888888888877776543
No 194
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.09 E-value=4.9e-11 Score=138.25 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchh--HHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhh
Q 002100 454 WQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIY--SLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSL 531 (967)
Q Consensus 454 ~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~--a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~ 531 (967)
++.+.+++.+|..++..|+|++|+.+|++|++++|.. ++..+| .++..+++
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg---------------------------~~~~~~g~ 55 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRS---------------------------LAYLRTEC 55 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH---------------------------HHHHHTTC
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHH---------------------------HHHHHhcC
Confidence 3456678889999999999999999999999998854 344444 44555554
Q ss_pred cCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHH--HHHhcCHHHHHHH
Q 002100 532 YCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWI--SIALEDYDGALRD 608 (967)
Q Consensus 532 y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~--~~~~g~~~~A~~~ 608 (967)
| ++|+..|+++++++|+++.+++.+|.+|..+|++++|++.|+++++++| +..++..++.+ +..+|++++|++.
T Consensus 56 ~---~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~ 132 (477)
T 1wao_1 56 Y---GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 132 (477)
T ss_dssp H---HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC---
T ss_pred H---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4 9999999999999999999999999999999999999999999999999 88889889888 8899999999999
Q ss_pred HH-----------HHHHhCCCchHHh
Q 002100 609 VR-----------ALLTLDPSYMMFY 623 (967)
Q Consensus 609 ~~-----------~al~l~p~~~~~~ 623 (967)
++ +++.++|++...+
T Consensus 133 ~~~~~~~~~~~~~~al~~~~~~~~~~ 158 (477)
T 1wao_1 133 DEHKRSVVDSLDIESMTIEDEYSGPK 158 (477)
T ss_dssp ---CCSTTTCCTTSSCCCCTTCCSCC
T ss_pred ccccchhHhhhhhhhccccccccccc
Confidence 99 8888888765554
No 195
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.08 E-value=1.5e-09 Score=99.34 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=108.1
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHH
Q 002100 586 PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLA 665 (967)
Q Consensus 586 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~ 665 (967)
..+++.+|.++...|++++|+..|++++..+|++...+ ..++.++...+++++| +.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~la~~~~~~~~~~~A------------------~~ 64 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW------YNLGNAYYKQGDYDEA------------------IE 64 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCHHHH------------------HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHH------HHHHHHHHHhCCHHHH------------------HH
Confidence 67899999999999999999999999999999988877 7778899999999999 89
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcC
Q 002100 666 VVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTG 726 (967)
Q Consensus 666 ~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g 726 (967)
.+.++++.+|.++..++.+|.++...|++++|+..++++++.+|+++.++..++.++...|
T Consensus 65 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 65 YYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999887654
No 196
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=9.6e-10 Score=104.56 Aligned_cols=113 Identities=18% Similarity=0.127 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCC---chHHHHHHHHHHhC
Q 002100 819 RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMR---TYPYRYRAAVLMDD 895 (967)
Q Consensus 819 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~---~~~~~~la~~~~~~ 895 (967)
..+..+|..++..|++++|+..|+++++ .+|++ ..++..+|.++...
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~------------------------------~~~~~~~~~~~~~~~a~~~~~~ 78 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG------------------------------LDATPQDQAVLHRNRAACHLKL 78 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT------------------------------SCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------------------HcccchHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666555555 44444 67888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhh
Q 002100 896 HKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATER 961 (967)
Q Consensus 896 g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~ 961 (967)
|++++|+..++++++..|+ ..+++.+|.++..+|++++|+..|+++++++|++..+...+.++.++
T Consensus 79 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 79 EDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp TCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred ccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 9999999999999999998 56899999999999999999999999999999999999998888654
No 197
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.07 E-value=6.9e-10 Score=99.70 Aligned_cols=104 Identities=13% Similarity=0.033 Sum_probs=94.7
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccc--hHHHHHH
Q 002100 674 DPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRS--FEAFFLK 751 (967)
Q Consensus 674 ~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~ 751 (967)
+|.++..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|+ ..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----- 76 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK----- 76 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH-----
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH-----
Confidence 68888899999999999999999999999999999999999999999999999999999999999998885 44
Q ss_pred HHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc-ccHHHHHHHHHHHhccCc
Q 002100 752 AYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC-EKLDLAADCYMNALNIKH 817 (967)
Q Consensus 752 ~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~-g~~~~A~~~~~~Al~~~~ 817 (967)
.++.++|.++... |++++|++++++++...+
T Consensus 77 -----------------------------------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 77 -----------------------------------DVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp -----------------------------------HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred -----------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 7889999999999 999999999999988544
No 198
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.07 E-value=1.3e-09 Score=104.96 Aligned_cols=139 Identities=18% Similarity=0.102 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchh------HHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEH------EKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLK 751 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~------~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 751 (967)
..++..+|.++...|++++|+..++++++..+... .++..+|.++...|++++|+..+++++++.+...
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----- 83 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK----- 83 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-----
Confidence 45778899999999999999999999998866543 4788999999999999999999999997765321
Q ss_pred HHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc----Cc----HHHHHH
Q 002100 752 AYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI----KH----TRAHQG 823 (967)
Q Consensus 752 ~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~----~~----~~a~~~ 823 (967)
+.+....++.++|.++...|++++|+.+|+++++. +. ..++..
T Consensus 84 -----------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 134 (164)
T 3ro3_A 84 -----------------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 134 (164)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------------------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHH
Confidence 11122468899999999999999999999999973 11 237889
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002100 824 LARVYHLKNQRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 824 la~~~~~~g~~~~A~~~~~~al~~~p~ 850 (967)
+|.++..+|++++|++.++++++....
T Consensus 135 la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 135 LGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987664
No 199
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.06 E-value=1.8e-10 Score=105.63 Aligned_cols=98 Identities=10% Similarity=-0.086 Sum_probs=87.6
Q ss_pred CChHHHHHHHHHhhcc---CCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHH
Q 002100 862 CDRDMAKSDLSMATQL---DPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRD 937 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l---~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~ 937 (967)
|++++|+..|++++++ +|+++.++..+|.+|...|++++|+..|+++++.+|+ ..+++.+|.++..+|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 6788999999999999 6889999999999999999999999999999999999 56999999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHH
Q 002100 938 CEAALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 938 ~~~al~~~P~~~~~l~l~~r~~ 959 (967)
++++++..|+++++......+.
T Consensus 84 ~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 84 LLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp HHHHHHHHCCCHHHHHTHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHH
Confidence 9999999999998876555444
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.06 E-value=2.6e-10 Score=108.37 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=74.2
Q ss_pred CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCH----------HHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcC-
Q 002100 862 CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKE----------AEAIAELSRAIAFKPD-LQLLHLRAAFHDSMG- 929 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~----------~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g- 929 (967)
+.+++|+..++++++++|+++.+|.++|.++...+++ ++|+..|+++++++|+ .++++++|.+|..+|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 3466777777777777777777777777777777654 5888888888888887 458888888887774
Q ss_pred ----------ChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 002100 930 ----------DHLHTQRDCEAALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 930 ----------~~~~A~~~~~~al~~~P~~~~~l~l~~r~~ 959 (967)
++++|+..|++|++++|++......+..+.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 788888888888888888876666555444
No 201
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.06 E-value=1.6e-10 Score=133.91 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=109.0
Q ss_pred ccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHH
Q 002100 518 DYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWIS 596 (967)
Q Consensus 518 ~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~ 596 (967)
.+...|..+...++| ++|+..|+++++++|++..++..+|.++..+|++++|++.|+++++++| ++.+++.+|.+|
T Consensus 8 ~~~~lg~~~~~~g~~---~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 8 ELKTQANDYFKAKDY---ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp TSSSSSSSTTTTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCH---HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 455667778878866 9999999999999999999999999999999999999999999999999 899999999999
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhh--HHHhhchhhH
Q 002100 597 IALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETL--QPLVQQWSQA 645 (967)
Q Consensus 597 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l--~~~~~~~~~A 645 (967)
..+|++++|+..|+++++++|++..++ ..++.+ +...+++++|
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~------~~l~~~~~~~~~g~~~~A 129 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAK------MKYQECNKIVKQKAFERA 129 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHH------HHHHHHHHHHHHHHHCCC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888 555666 7777888888
No 202
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.05 E-value=2.9e-09 Score=96.42 Aligned_cols=110 Identities=15% Similarity=0.067 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHH
Q 002100 588 CLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVV 667 (967)
Q Consensus 588 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~ 667 (967)
.+..+|.++...|++++|+..|++++..+|++..++ ..++.++...+++++| +..+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~~A------------------~~~~ 61 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLY------SNRSAAYAKKGDYQKA------------------YEDG 61 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHHTCHHHH------------------HHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHH------HHHHHHHHhhccHHHH------------------HHHH
Confidence 344444444444444444444444444444444443 3334444444444444 4444
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 002100 668 HHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWI 721 (967)
Q Consensus 668 ~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~ 721 (967)
.++++.+|.++..++.+|.++...|++++|+..++++++.+|+++.++..++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 62 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 444444444455555556666666666666666666666666666666555554
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.05 E-value=5.2e-10 Score=106.26 Aligned_cols=88 Identities=11% Similarity=0.102 Sum_probs=83.5
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcH----------HHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc----
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKL----------AAAITEINRIIGFKV-SPDCLELRAWISIALE---- 600 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g---- 600 (967)
++|+..++++++++|+++.+|+++|.++...+++ ++|+..|+++++++| +.++++.+|.+|..+|
T Consensus 19 eeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P 98 (158)
T 1zu2_A 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTP 98 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCc
Confidence 9999999999999999999999999999999875 599999999999999 8999999999999885
Q ss_pred -------CHHHHHHHHHHHHHhCCCchHHh
Q 002100 601 -------DYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 601 -------~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
++++|+..|+++++++|++..+.
T Consensus 99 ~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~ 128 (158)
T 1zu2_A 99 DETEAKHNFDLATQFFQQAVDEQPDNTHYL 128 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred chhhhhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 89999999999999999987666
No 204
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.04 E-value=1.5e-10 Score=127.89 Aligned_cols=135 Identities=14% Similarity=0.116 Sum_probs=62.0
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchh-----------------HHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 676 GKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEH-----------------EKLVYEGWILYDTGHREEALAKAEES 738 (967)
Q Consensus 676 ~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~-----------------~a~~~lg~~~~~~g~~~eA~~~~~~a 738 (967)
.....++.+|..+...|++++|+..|++++...|++. .+++++|.++..+|++++|+..|+++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455677888888888888888888888888888765 24555555555555555555555555
Q ss_pred HhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH
Q 002100 739 ISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT 818 (967)
Q Consensus 739 l~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~ 818 (967)
++++|++. .+++++|.+|..+|++++|+.+|++++++++.
T Consensus 257 l~~~p~~~----------------------------------------~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 257 LTEEEKNP----------------------------------------KALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp HHHCTTCH----------------------------------------HHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred HHhCCCCH----------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 55555333 45555555555555555555555555543332
Q ss_pred --HHHHHHHHH-HHHhCCHHHHHHHHHHHHHHccC
Q 002100 819 --RAHQGLARV-YHLKNQRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 819 --~a~~~la~~-~~~~g~~~~A~~~~~~al~~~p~ 850 (967)
.++..++.+ ....++.+++...|.+++...|+
T Consensus 297 ~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 297 DKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp -----------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 244444444 22333444444445544444443
No 205
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.5e-09 Score=103.25 Aligned_cols=118 Identities=13% Similarity=0.101 Sum_probs=104.5
Q ss_pred hhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHH
Q 002100 547 ELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S---PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMF 622 (967)
Q Consensus 547 ~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 622 (967)
..+|.....++.+|..++..|++++|+..|++++..+| + ..++..+|.+|...|++++|+..+++++..+|++..+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 45677888999999999999999999999999999999 4 7899999999999999999999999999999999888
Q ss_pred hhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHH
Q 002100 623 YGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLL 688 (967)
Q Consensus 623 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~ 688 (967)
+ +.++.++...+++++| +..+.++++.+|.+..++..++.+.
T Consensus 102 ~------~~~a~~~~~~~~~~~A------------------~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 102 L------YRRSQALEKLGRLDQA------------------VLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp H------HHHHHHHHHHTCHHHH------------------HHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred H------HHHHHHHHHcCCHHHH------------------HHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 8 7788999999999999 8899999999999888777666553
No 206
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.02 E-value=1.1e-09 Score=98.23 Aligned_cols=107 Identities=8% Similarity=0.051 Sum_probs=97.1
Q ss_pred hCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--chHHhh
Q 002100 548 LDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPS--YMMFYG 624 (967)
Q Consensus 548 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~ 624 (967)
++|++..+++.+|.++...|++++|+..|++++..+| +..++..+|.++...|++++|+..++++++.+|+ +...+
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~- 79 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVW- 79 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHH-
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHH-
Confidence 4688899999999999999999999999999999999 8899999999999999999999999999999999 88877
Q ss_pred hhhhhhhHhhhHHHh-hchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh
Q 002100 625 QLHGDNLVETLQPLV-QQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS 678 (967)
Q Consensus 625 ~~~~~~~~~~l~~~~-~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~ 678 (967)
..++.++... +++++| +..+.+++...|..+
T Consensus 80 -----~~l~~~~~~~~~~~~~A------------------~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 80 -----AAKADALRYIEGKEVEA------------------EIAEARAKLEHHHHH 111 (112)
T ss_dssp -----HHHHHHHTTCSSCSHHH------------------HHHHHHHGGGCCCCC
T ss_pred -----HHHHHHHHHHhCCHHHH------------------HHHHHHHhhcccCCC
Confidence 7788999999 999999 889999998888753
No 207
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.00 E-value=9.1e-10 Score=103.58 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=83.8
Q ss_pred EEEEE-cCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCC----------------
Q 002100 258 MSFCI-GNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKM---------------- 320 (967)
Q Consensus 258 v~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~---------------- 320 (967)
|+|+. +|+.|.+||.+ |.+|++|++||.+.- ...|.|+. |+..+++.|++|+|+..
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl~~--V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 76 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPLPN--VNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 76 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEECTT--CCHHHHHHHHHHHHHHTTCC-------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC----CCceecCC--cCHHHHHHHHHHHHHhccCCCccccccccccch
Confidence 77776 89999999998 899999999997531 45799976 99999999999999866
Q ss_pred ----------CCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHH
Q 002100 321 ----------LDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVM 364 (967)
Q Consensus 321 ----------~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~ 364 (967)
+ .++.+++.+|+.+|+++++..|.+.|.++++..+. -.+...
T Consensus 77 ~~i~~wD~~F~-~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ik-gkt~ee 128 (141)
T 1fs1_B 77 DDIPVWDQEFL-KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIK-GKTPEE 128 (141)
T ss_dssp ----HHHHHHT-CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-TCCHHH
T ss_pred hhhhHHHHHHH-hCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-CCCHHH
Confidence 4 57888999999999999999999999999999887 444443
No 208
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.00 E-value=1.5e-09 Score=100.48 Aligned_cols=122 Identities=13% Similarity=0.170 Sum_probs=100.8
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhh
Q 002100 677 KSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALA 756 (967)
Q Consensus 677 ~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la 756 (967)
.+..++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---------- 72 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR---------- 72 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST----------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc----------
Confidence 4567889999999999999999999999999999999999999999999999999999999998887431
Q ss_pred hcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc-HHHHHHHHHHHHHh
Q 002100 757 DSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH-TRAHQGLARVYHLK 831 (967)
Q Consensus 757 ~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~-~~a~~~la~~~~~~ 831 (967)
...+....+++++|.++...|++++|+.+|+++++..+ ......++.+....
T Consensus 73 -----------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 73 -----------------------EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKIL 125 (131)
T ss_dssp -----------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred -----------------------hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 00001136888999999999999999999999988544 34666666665544
No 209
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.00 E-value=8.7e-10 Score=106.18 Aligned_cols=141 Identities=16% Similarity=0.065 Sum_probs=115.9
Q ss_pred chHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH--------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHH
Q 002100 784 RKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT--------RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAY 855 (967)
Q Consensus 784 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~--------~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 855 (967)
..+.++..+|.++...|++++|+.+|+++++..+. .++..+|.++..+|++++|+..++++++..+...
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--- 83 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK--- 83 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---
Confidence 34578999999999999999999999999983221 3788999999999999999999999998765311
Q ss_pred HHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHc
Q 002100 856 EKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-------LQLLHLRAAFHDSM 928 (967)
Q Consensus 856 ~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-------~~~~~~~a~~~~~~ 928 (967)
..+....++.++|.++...|++++|+..++++++..+. ..++..+|.++..+
T Consensus 84 ---------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 142 (164)
T 3ro3_A 84 ---------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 142 (164)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc
Confidence 00112456788999999999999999999999976322 23788899999999
Q ss_pred CChHHHHHHHHHHHhcCCCc
Q 002100 929 GDHLHTQRDCEAALCLDPNH 948 (967)
Q Consensus 929 g~~~~A~~~~~~al~~~P~~ 948 (967)
|++++|+..+++++++....
T Consensus 143 g~~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 143 GNHDQAMHFAEKHLEISREV 162 (164)
T ss_dssp TCHHHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999876543
No 210
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.99 E-value=1.5e-09 Score=100.45 Aligned_cols=117 Identities=15% Similarity=0.038 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCH
Q 002100 819 RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKE 898 (967)
Q Consensus 819 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~ 898 (967)
.++..+|.++...|++++|+..|+++++.. |.++.++..+|.++...|++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------------------~~~~~~~~~la~~~~~~~~~ 54 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD------------------------------PTNMTYITNQAAVYFEKGDY 54 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------------------------------CccHHHHHHHHHHHHHhccH
Confidence 356777777777777777777776666654 45566778888899999999
Q ss_pred HHHHHHHHHHHhcCCC--------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhhhcC
Q 002100 899 AEAIAELSRAIAFKPD--------LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVNEQQ 966 (967)
Q Consensus 899 ~eAi~~~~kal~~~p~--------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~~~~ 966 (967)
++|+..|+++++..|+ ..+++.+|.++..+|++++|+..|+++++++| ++.+...+.++....++.+
T Consensus 55 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 129 (131)
T 1elr_A 55 NKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQE 129 (131)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence 9999999999888664 34788899999999999999999999999988 5778888888877766543
No 211
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.99 E-value=5.1e-09 Score=97.15 Aligned_cols=66 Identities=14% Similarity=0.017 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-Ch---hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 002100 554 YPYKYRAILLVEENKLAAAITEINRIIGFKV-SP---DCLELRAWISIALEDYDGALRDVRALLTLDPSY 619 (967)
Q Consensus 554 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~---~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 619 (967)
.+++.+|.+++..|++++|+..|++++..+| ++ .+++.+|.++...|++++|+..|++++..+|++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 3456666666666666666666666666666 44 466666666666666666666666666666654
No 212
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.98 E-value=5e-10 Score=102.61 Aligned_cols=90 Identities=8% Similarity=-0.059 Sum_probs=85.0
Q ss_pred ChHHHHHHHHHhHhh---CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHH
Q 002100 534 SGKEKMMDLNTATEL---DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDV 609 (967)
Q Consensus 534 ~~~~A~~~~~~al~l---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~ 609 (967)
++++|+..|++++++ +|++..+++.+|.++...|++++|+..|+++++.+| ++.+++.+|.++..+|++++|+..+
T Consensus 5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 84 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELL 84 (117)
T ss_dssp --CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 348999999999999 699999999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHhCCCchHHh
Q 002100 610 RALLTLDPSYMMFY 623 (967)
Q Consensus 610 ~~al~l~p~~~~~~ 623 (967)
++++...|+++...
T Consensus 85 ~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 85 LKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHCCCHHHH
T ss_pred HHHHHhCCCcHHHH
Confidence 99999999988766
No 213
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.98 E-value=4.8e-07 Score=104.87 Aligned_cols=208 Identities=9% Similarity=-0.026 Sum_probs=146.3
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
...|++++...|..+.+|+..+..+.+.|+.+.|...|++++.. |.+...+...+... +.++. +++..+..-
T Consensus 199 ~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~----e~~~~---~~~l~~~~~ 270 (493)
T 2uy1_A 199 HFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM----DEEAV---YGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT----TCTHH---HHHHHHHTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc----chhHH---HHHHHHHHH
Confidence 57899999999999999999999999999999999999999999 99876665444331 11111 222211100
Q ss_pred chHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC-cHHHHH
Q 002100 744 SFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK-HTRAHQ 822 (967)
Q Consensus 744 ~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~-~~~a~~ 822 (967)
+... ... . ..........|...+......++.+.|...|++|..+. ....+.
T Consensus 271 -----------~~~~--~~~---~-----------~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i 323 (493)
T 2uy1_A 271 -----------MGEA--ESA---E-----------KVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFI 323 (493)
T ss_dssp -------------------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHH
T ss_pred -----------hhcc--chh---h-----------hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHH
Confidence 0000 000 0 00001122567777777778889999999999992232 223666
Q ss_pred HHHHHHHHhC-CHHHHHHHHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCC
Q 002100 823 GLARVYHLKN-QRKAAYDEMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHK 897 (967)
Q Consensus 823 ~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~ 897 (967)
..|.+.+..+ +.+.|...|+.+++..|+.+..+..... .++.+.|...|+++. .....|......-...|+
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 6677766666 6999999999999999998877665553 388999999999983 355666666666667799
Q ss_pred HHHHHHHHHHHHh
Q 002100 898 EAEAIAELSRAIA 910 (967)
Q Consensus 898 ~~eAi~~~~kal~ 910 (967)
.+.+.+.++++++
T Consensus 400 ~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 400 MELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998885
No 214
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.95 E-value=3.4e-09 Score=118.39 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhc
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIG 581 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~ 581 (967)
+..+|..++..|+|++|+..|+++++
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~ 251 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLR 251 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44555555555555555555555554
No 215
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.93 E-value=4e-09 Score=117.75 Aligned_cols=123 Identities=12% Similarity=0.129 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHH----------------hCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHH
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLT----------------LDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQ 650 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~----------------l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~ 650 (967)
..+..+|..+...|+|++|+..|+++++ ++|.+..++ .+++.++...++|++|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~------~nla~~~~~~g~~~~A----- 292 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCV------LNIGACKLKMSDWQGA----- 292 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHH------HHHHHHHHHTTCHHHH-----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHH------HHHHHHHHhccCHHHH-----
Confidence 4578899999999999999999999998 444444444 5566666677777666
Q ss_pred HHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHH
Q 002100 651 LYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREE 730 (967)
Q Consensus 651 l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~e 730 (967)
+..+.++++.+|.++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...+++++
T Consensus 293 -------------~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 293 -------------VDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp -------------HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777777777777777777777777777777777777777777666666665
Q ss_pred HHH
Q 002100 731 ALA 733 (967)
Q Consensus 731 A~~ 733 (967)
+.+
T Consensus 360 a~k 362 (370)
T 1ihg_A 360 KEK 362 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 216
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.86 E-value=5.8e-10 Score=107.39 Aligned_cols=107 Identities=13% Similarity=0.145 Sum_probs=57.8
Q ss_pred cEEEEE-cCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCC-------------
Q 002100 257 DMSFCI-GNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLD------------- 322 (967)
Q Consensus 257 Dv~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~------------- 322 (967)
-|+|+. +|+.|.+||.+ |.+|++|++||.+.. ....|.|+. |+..+++.|++|+|+..-.
T Consensus 5 ~v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~~--V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~ 78 (160)
T 2p1m_A 5 KIVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLPN--VTSKILAKVIEYCKRHVEAAASKAEAVEGAAT 78 (160)
T ss_dssp ---CCC---------CHH-HHTCTTTC---------------CCTT--SCHHHHHHHHHC--------------------
T ss_pred EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCCc--CcHHHHHHHHHHHHHcccCCCccccccccccc
Confidence 367764 89999999998 899999999998653 234788865 9999999999999987621
Q ss_pred -------------CCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCC--ChhhHHHHHHHH
Q 002100 323 -------------SFDPRLVLELLSFANRFCCEELKSACDSYLASMVS--DIEDAVMLIEYG 369 (967)
Q Consensus 323 -------------~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~--~~~n~~~~~~~A 369 (967)
.++.+++.+|+.+|++++|..|.++|.++++..+. +++.+..++.+.
T Consensus 79 ~~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~ 140 (160)
T 2p1m_A 79 SDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIK 140 (160)
T ss_dssp ----------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCC
T ss_pred ccchhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCC
Confidence 46778899999999999999999999999999984 256655555443
No 217
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.84 E-value=1.3e-08 Score=92.53 Aligned_cols=85 Identities=12% Similarity=0.090 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 865 DMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALC 943 (967)
Q Consensus 865 ~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 943 (967)
+.|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+ ..+++.+|.++..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999998 46899999999999999999999999999
Q ss_pred cCCCch
Q 002100 944 LDPNHT 949 (967)
Q Consensus 944 ~~P~~~ 949 (967)
++|++.
T Consensus 82 ~~~~~~ 87 (115)
T 2kat_A 82 AAQSRG 87 (115)
T ss_dssp HHHHHT
T ss_pred hccccc
Confidence 998643
No 218
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.79 E-value=1.4e-08 Score=92.34 Aligned_cols=87 Identities=11% Similarity=-0.036 Sum_probs=81.9
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+| +..+++.+|.+|..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred hCCCchHH
Q 002100 615 LDPSYMMF 622 (967)
Q Consensus 615 l~p~~~~~ 622 (967)
++|+....
T Consensus 82 ~~~~~~~~ 89 (115)
T 2kat_A 82 AAQSRGDQ 89 (115)
T ss_dssp HHHHHTCH
T ss_pred hccccccH
Confidence 98865433
No 219
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.69 E-value=1e-08 Score=92.12 Aligned_cols=100 Identities=8% Similarity=-0.005 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhh
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALAD 757 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~ 757 (967)
...++.+|.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..++++++++|++...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------- 74 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV--------- 74 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHH---------
Confidence 56788999999999999999999999999999999999999999999999999999999999999965200
Q ss_pred cCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHH
Q 002100 758 SSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMN 811 (967)
Q Consensus 758 ~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 811 (967)
.....++..+|.++...|++++|+..|++
T Consensus 75 -------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 75 -------------------------AIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 00126788888888888888777666543
No 220
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.66 E-value=1.5e-07 Score=108.15 Aligned_cols=134 Identities=11% Similarity=-0.075 Sum_probs=110.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHh
Q 002100 684 QSLLLLRLNSQKAAMRSLRLARNY--------STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYAL 755 (967)
Q Consensus 684 ~g~~~~~~g~~~~A~~~l~~al~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~l 755 (967)
.+..+..+|+|++|+..+++++++ +|.....+.++|.+|..+|++++|+.++++++++...
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~----------- 383 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMK----------- 383 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-----------
Confidence 344566789999999999999875 3444567899999999999999999999999965431
Q ss_pred hhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc-------cCcHH---HHHHHH
Q 002100 756 ADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN-------IKHTR---AHQGLA 825 (967)
Q Consensus 756 a~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-------~~~~~---a~~~la 825 (967)
....++|..+..+++||.+|..+|++++|+..|++|++ ++|+. ....++
T Consensus 384 ---------------------~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~ 442 (490)
T 3n71_A 384 ---------------------LYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRM 442 (490)
T ss_dssp ---------------------HSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred ---------------------HcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 12345567778999999999999999999999999987 45654 677899
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHcc
Q 002100 826 RVYHLKNQRKAAYDEMTKLIEKAR 849 (967)
Q Consensus 826 ~~~~~~g~~~~A~~~~~~al~~~p 849 (967)
.++..++.+++|...|.++.+..-
T Consensus 443 ~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 443 QTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999877553
No 221
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.64 E-value=7.6e-08 Score=86.28 Aligned_cols=88 Identities=16% Similarity=0.074 Sum_probs=77.0
Q ss_pred CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------hHHhh
Q 002100 552 LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSY------MMFYG 624 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~ 624 (967)
.+.+++.+|.+++..|++++|++.|++++..+| ++.++..+|.++..+|++++|+..|+++++++|++ ..++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~- 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ- 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH-
Confidence 346788999999999999999999999999999 89999999999999999999999999999999998 4444
Q ss_pred hhhhhhhHhhhHHHhhchhhH
Q 002100 625 QLHGDNLVETLQPLVQQWSQA 645 (967)
Q Consensus 625 ~~~~~~~~~~l~~~~~~~~~A 645 (967)
+.++.++...++++.|
T Consensus 82 -----~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 82 -----YRLELAQGAVGSVQIP 97 (111)
T ss_dssp -----HHHHHHHHHHHCCCCC
T ss_pred -----HHHHHHHHHHHhHhhh
Confidence 6677788887777776
No 222
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.63 E-value=3.1e-07 Score=86.60 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=91.1
Q ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHH
Q 002100 692 NSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQL 771 (967)
Q Consensus 692 g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~ 771 (967)
+++++|+..|+++.+.... .+. +|.+|...+..++|+.+|+++.+... .
T Consensus 9 ~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~--~------------------------- 57 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACELNS--G------------------------- 57 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHTTC--H-------------------------
T ss_pred cCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcCCC--H-------------------------
Confidence 5678888888888887643 344 88888888888888888888885522 2
Q ss_pred HHHHhcCCCCCCchHHHHHHhHHHHHh----cccHHHHHHHHHHHhccCcHHHHHHHHHHHHH----hCCHHHHHHHHHH
Q 002100 772 LEEALRCPSDGLRKGQALNNLGSVYVD----CEKLDLAADCYMNALNIKHTRAHQGLARVYHL----KNQRKAAYDEMTK 843 (967)
Q Consensus 772 le~~~~~~~~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~----~g~~~~A~~~~~~ 843 (967)
.+++++|.+|.. .+++++|+.+|++|.+.+++.+.++||.+|.. .+++++|+.+|++
T Consensus 58 ---------------~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 122 (138)
T 1klx_A 58 ---------------NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122 (138)
T ss_dssp ---------------HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 688888998888 78999999999999988888899999999988 8889999999988
Q ss_pred HHHHc
Q 002100 844 LIEKA 848 (967)
Q Consensus 844 al~~~ 848 (967)
+.+..
T Consensus 123 Aa~~g 127 (138)
T 1klx_A 123 ACRLG 127 (138)
T ss_dssp HHHTT
T ss_pred HHHCC
Confidence 88763
No 223
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.62 E-value=5.4e-08 Score=86.13 Aligned_cols=74 Identities=9% Similarity=0.103 Sum_probs=65.9
Q ss_pred cCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchh
Q 002100 877 LDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTD 950 (967)
Q Consensus 877 l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~ 950 (967)
.+|+++.+++.+|.+|...|++++|+..|+++++.+|+ ..++..+|.+|..+|++++|+..|++++++.|++.+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 47899999999999999999999999999999999998 569999999999999999999999999999876443
No 224
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.61 E-value=1.7e-07 Score=80.59 Aligned_cols=71 Identities=11% Similarity=0.143 Sum_probs=67.1
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 676 GKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 676 ~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
..+..++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++++|++.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 77 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999666
No 225
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.61 E-value=8e-08 Score=85.00 Aligned_cols=76 Identities=9% Similarity=-0.021 Sum_probs=68.8
Q ss_pred hCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 548 LDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 548 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
.+|+++.+++.+|.+++..|++++|+..|+++++.+| ++.+++.+|.+|..+|++++|+..|++++++.|+.....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 78 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK 78 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence 4799999999999999999999999999999999999 899999999999999999999999999999977655444
No 226
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.57 E-value=2e-07 Score=80.07 Aligned_cols=82 Identities=12% Similarity=0.071 Sum_probs=73.5
Q ss_pred CCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhh
Q 002100 551 TLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGD 629 (967)
Q Consensus 551 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 629 (967)
....+++.+|.++...|++++|+..|++++..+| ++.++..+|.++...|++++|+..|+++++++|++..++
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~------ 80 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK------ 80 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHH------
Confidence 4567889999999999999999999999999999 899999999999999999999999999999999998887
Q ss_pred hhHhhhHHH
Q 002100 630 NLVETLQPL 638 (967)
Q Consensus 630 ~~~~~l~~~ 638 (967)
..++.++..
T Consensus 81 ~~l~~~~~~ 89 (91)
T 1na3_A 81 QNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555543
No 227
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.56 E-value=3.2e-07 Score=105.50 Aligned_cols=137 Identities=9% Similarity=-0.048 Sum_probs=106.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHH
Q 002100 717 YEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVY 796 (967)
Q Consensus 717 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~ 796 (967)
..+..+..+|+|++|+..+++++++.... ...+++..+..++++|.+|
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~--------------------------------lg~~Hp~~a~~~~nLa~~y 361 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPV--------------------------------FADTNLYVLRLLSIASEVL 361 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTT--------------------------------BCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHh--------------------------------cCCCCHHHHHHHHHHHHHH
Confidence 34456778999999999999999654311 1223455668999999999
Q ss_pred HhcccHHHHHHHHHHHhc-------cCcHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHH
Q 002100 797 VDCEKLDLAADCYMNALN-------IKHTR---AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDM 866 (967)
Q Consensus 797 ~~~g~~~~A~~~~~~Al~-------~~~~~---a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 866 (967)
..+|+|++|+.+|+++++ .+|+. .+.+||.+|..+|++++|...|++++++..
T Consensus 362 ~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~----------------- 424 (490)
T 3n71_A 362 SYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL----------------- 424 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----------------
Confidence 999999999999999987 45554 799999999999999999999999987532
Q ss_pred HHHHHHHhhccCCCC---chHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002100 867 AKSDLSMATQLDPMR---TYPYRYRAAVLMDDHKEAEAIAELSRAIA 910 (967)
Q Consensus 867 A~~~l~~al~l~p~~---~~~~~~la~~~~~~g~~~eAi~~~~kal~ 910 (967)
+. +-|++ .....+++.++.+++++++|...|.++.+
T Consensus 425 ------~~--lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 425 ------VT--HGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp ------HH--TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HH--hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 23333 34456788888888889999888888765
No 228
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.56 E-value=6.2e-07 Score=84.51 Aligned_cols=116 Identities=10% Similarity=-0.014 Sum_probs=100.2
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH----cCChHHHHHHHHHH
Q 002100 663 SLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYD----TGHREEALAKAEES 738 (967)
Q Consensus 663 al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~a 738 (967)
|+..|+++.+....... +|.+|...+..++|+..|+++.+. .++.+++++|.+|.. .+++++|+.+|+++
T Consensus 14 A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 87 (138)
T 1klx_A 14 AIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKA 87 (138)
T ss_dssp HHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 38999999988744433 999999999999999999999987 678999999999999 89999999999999
Q ss_pred HhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHh----cccHHHHHHHHHHHhc
Q 002100 739 ISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVD----CEKLDLAADCYMNALN 814 (967)
Q Consensus 739 l~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~ 814 (967)
.+.. +. .+++++|.+|.. .+++++|+.+|++|.+
T Consensus 88 a~~g--~~----------------------------------------~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 88 CGLN--DQ----------------------------------------DGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHTT--CH----------------------------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HcCC--CH----------------------------------------HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 8652 22 689999999999 8999999999999999
Q ss_pred cCcHHHHHHHHH
Q 002100 815 IKHTRAHQGLAR 826 (967)
Q Consensus 815 ~~~~~a~~~la~ 826 (967)
.++..+...|+.
T Consensus 126 ~g~~~A~~~l~~ 137 (138)
T 1klx_A 126 LGSEDACGILNN 137 (138)
T ss_dssp TTCHHHHHHC--
T ss_pred CCCHHHHHHHhh
Confidence 999888777654
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.55 E-value=3.5e-07 Score=85.75 Aligned_cols=101 Identities=9% Similarity=0.010 Sum_probs=90.8
Q ss_pred hHHHHHHHHHhhccCCCCchHHHHHHHHHHhCC---CHHHHHHHHHHHHhcC-CC--hHHHHHHHHHHHHcCChHHHHHH
Q 002100 864 RDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDH---KEAEAIAELSRAIAFK-PD--LQLLHLRAAFHDSMGDHLHTQRD 937 (967)
Q Consensus 864 ~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g---~~~eAi~~~~kal~~~-p~--~~~~~~~a~~~~~~g~~~~A~~~ 937 (967)
...+...|.+.++.+|.+..+.+++|+++.+.. +.++++..++..++.+ |+ .+++|++|..|.++|+|++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 355667788888888999999999999999998 6779999999999998 73 46999999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHhhhhh
Q 002100 938 CEAALCLDPNHTDTLELYDKATERVNE 964 (967)
Q Consensus 938 ~~~al~~~P~~~~~l~l~~r~~~~~~~ 964 (967)
++++|+++|+|.++..+...+++++++
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888753
No 230
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.50 E-value=3.1e-06 Score=91.66 Aligned_cols=77 Identities=12% Similarity=0.079 Sum_probs=70.5
Q ss_pred HHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHH
Q 002100 670 MLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEA 747 (967)
Q Consensus 670 ~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~ 747 (967)
++..+|..+.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|+..|++|+.++|....
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 34677999999999999999999999999999999999986 678889999999999999999999999999997763
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.48 E-value=1.5e-06 Score=90.13 Aligned_cols=102 Identities=12% Similarity=-0.009 Sum_probs=86.9
Q ss_pred HccCCHHHHHHHHcc---------------CChHHHHHHHHHhhccCCC--CchHHHHHHHHHHhC-----CCHHHHHHH
Q 002100 847 KARNNASAYEKRSEY---------------CDRDMAKSDLSMATQLDPM--RTYPYRYRAAVLMDD-----HKEAEAIAE 904 (967)
Q Consensus 847 ~~p~~~~~~~~~~~~---------------~~~~~A~~~l~~al~l~p~--~~~~~~~la~~~~~~-----g~~~eAi~~ 904 (967)
.+|+++.+++..+.. .....|...+++|+++||+ +..+|..+|.+|... |+.++|.+.
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 456667666665510 3457899999999999999 677999999999995 999999999
Q ss_pred HHHHHhcCCC--hHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCc
Q 002100 905 LSRAIAFKPD--LQLLHLRAAFHDS-MGDHLHTQRDCEAALCLDPNH 948 (967)
Q Consensus 905 ~~kal~~~p~--~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~P~~ 948 (967)
|++|++++|+ ..+++..|..+.. +|++++|.+.+++|+..+|..
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 9999999995 5689999999988 599999999999999998884
No 232
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.47 E-value=2.6e-06 Score=92.27 Aligned_cols=76 Identities=13% Similarity=0.081 Sum_probs=70.2
Q ss_pred hhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch
Q 002100 874 ATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHT 949 (967)
Q Consensus 874 al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~ 949 (967)
++..+|.++.++..+|.++...|++++|+..+++|++++|+...+..+|.++...|++++|+..|++|+.++|..+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 4577899999999999989888999999999999999998876888899999999999999999999999999886
No 233
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.47 E-value=3.8e-07 Score=79.63 Aligned_cols=81 Identities=19% Similarity=0.322 Sum_probs=69.5
Q ss_pred cEEEEE-cCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCC-----------CC--
Q 002100 257 DMSFCI-GNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKM-----------LD-- 322 (967)
Q Consensus 257 Dv~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~-----------~~-- 322 (967)
-|+++. +|+.|.++|.+ |.+|..++.||.+++ |+....|.|+. |+..+++.|++|+|... ++
T Consensus 5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp~--V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w 80 (99)
T 1hv2_A 5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELKQ--FDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF 80 (99)
T ss_dssp EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEETT--SCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCC
T ss_pred EEEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecCC--cCHHHHHHHHHHHHHhcccCCCccccccCCCc
Confidence 477776 99999999997 899999999999877 66667899976 99999999999998632 22
Q ss_pred CCCHHHHHHHHHHhchhCh
Q 002100 323 SFDPRLVLELLSFANRFCC 341 (967)
Q Consensus 323 ~~~~~~~~~ll~~A~~~~~ 341 (967)
.++.+.+.+|+.+|++++|
T Consensus 81 ~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 81 EIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp CCCHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 6789999999999999875
No 234
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.43 E-value=3.3e-07 Score=80.43 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCC-Chh-HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKV-SPD-CLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~-~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
.+.+|..+...|++++|+..|+++++.+| ++. +++.+|.+|..+|++++|+..|+++++++|++..++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 35678888888999999999999998888 778 888899999999999999999999999988887766
No 235
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.38 E-value=3e-07 Score=79.83 Aligned_cols=81 Identities=27% Similarity=0.395 Sum_probs=63.9
Q ss_pred EEEEE-cCeEEEehhHHHhccCHHHHHhhcC--CCCCCccceEEeccCCCCHHHHHHHHHhHcCCC--------CC--CC
Q 002100 258 MSFCI-GNDEIRCVRYKIASLSRPFRTMLYG--GFIESRREKVNFSQNGISVEAMRAAEEFSRTKM--------LD--SF 324 (967)
Q Consensus 258 v~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~--~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~--------~~--~~ 324 (967)
|+++. +|+.|.+||.+ |.+|.+|+.||.+ .+.|+....|.|+. |+..+++.|++|+|... ++ .+
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~--V~~~iL~kVieyc~~h~~~~~~~~~i~~w~v 79 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFRE--IPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 79 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSS--CCHHHHHHHHHHHHHHHHHHSCCSCCCCCCC
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCC--CCHHHHHHHHHHHHHccccCCCcccCCCccc
Confidence 56665 99999999997 8999999999985 34677778899976 99999999999998532 22 57
Q ss_pred CHHHHHHHHHHhchhCh
Q 002100 325 DPRLVLELLSFANRFCC 341 (967)
Q Consensus 325 ~~~~~~~ll~~A~~~~~ 341 (967)
+.+.+.+|+.+|++++|
T Consensus 80 d~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 80 APEIALELLMAANFLDC 96 (96)
T ss_dssp CTTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 88999999999999875
No 236
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.35 E-value=2e-06 Score=83.13 Aligned_cols=98 Identities=13% Similarity=0.127 Sum_probs=76.7
Q ss_pred cEEEEE-cCeEEEehhHHHhccCHHHHHhhcCCCC----CCccceEEeccCCCCHHHHHHHHHhHcCCCC----------
Q 002100 257 DMSFCI-GNDEIRCVRYKIASLSRPFRTMLYGGFI----ESRREKVNFSQNGISVEAMRAAEEFSRTKML---------- 321 (967)
Q Consensus 257 Dv~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~~~~----e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~---------- 321 (967)
-|+|+. +|+.|.+++.+ |.+|..++.|+.+.-. +.....|.|+. |+..+++.|++|++...-
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~Iplpn--V~s~iL~kVieyc~~h~~~~~~~~~~~~ 84 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPN--VRSSVLQKVIEWAEHHRDSNFPDEDDDD 84 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTT--CCHHHHHHHHHHHHHTTTCCCCC-----
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCC--CCHHHHHHHHHHHHHcccCCCccccccc
Confidence 567765 89999999997 7899999999975322 23346899976 999999999999975431
Q ss_pred -------C-------CCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCC
Q 002100 322 -------D-------SFDPRLVLELLSFANRFCCEELKSACDSYLASMVS 357 (967)
Q Consensus 322 -------~-------~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~ 357 (967)
+ .++.+.+.+|+.+|++++|..|.+.|.+.++..+.
T Consensus 85 ~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ik 134 (169)
T 3v7d_A 85 SRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR 134 (169)
T ss_dssp ---CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHc
Confidence 0 46678889999999999999999999888877775
No 237
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.34 E-value=2.6e-06 Score=73.81 Aligned_cols=83 Identities=17% Similarity=0.091 Sum_probs=70.9
Q ss_pred CCCCchHHHHHHHHHHhCCC---HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHH
Q 002100 878 DPMRTYPYRYRAAVLMDDHK---EAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLE 953 (967)
Q Consensus 878 ~p~~~~~~~~la~~~~~~g~---~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~ 953 (967)
+|+++..+..+|.+++..++ .++|...++++++.+|+. .++..+|..++..|+|++|+..|+++++.+|.+++.-.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~ 81 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVT 81 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence 68899999999999976655 799999999999999994 59999999999999999999999999999999766555
Q ss_pred HHHHHHh
Q 002100 954 LYDKATE 960 (967)
Q Consensus 954 l~~r~~~ 960 (967)
+...+..
T Consensus 82 i~~~I~~ 88 (93)
T 3bee_A 82 IIESINK 88 (93)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 238
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.33 E-value=2.1e-06 Score=75.17 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=39.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCC-hH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHH
Q 002100 887 YRAAVLMDDHKEAEAIAELSRAIAFKPD-LQ-LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTL 952 (967)
Q Consensus 887 ~la~~~~~~g~~~eAi~~~~kal~~~p~-~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l 952 (967)
.+|.++...|++++|+..|+++++.+|+ .. +++.+|.++..+|++++|+..|+++++++|++..+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4555555566666666666666666555 34 555566666666666666666666666666655554
No 239
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.27 E-value=3.4e-05 Score=79.94 Aligned_cols=107 Identities=12% Similarity=-0.068 Sum_probs=81.4
Q ss_pred hcCCCChHHHHHHHHHHHH-----------hcCHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHc-----CChHHHHH
Q 002100 672 ANDPGKSLLRFRQSLLLLR-----------LNSQKAAMRSLRLARNYSTS--EHEKLVYEGWILYDT-----GHREEALA 733 (967)
Q Consensus 672 ~~~p~~~~~~~~~g~~~~~-----------~g~~~~A~~~l~~al~~~p~--~~~a~~~lg~~~~~~-----g~~~eA~~ 733 (967)
+.+|.+...++-.|..+.. ++....|...++++++++|+ +..++..+|.+|... |+.++|.+
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 3456666555544444432 23467888899999999999 566899999999885 99999999
Q ss_pred HHHHHHhcccch-HHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHh-cccHHHHHHHHHH
Q 002100 734 KAEESISIQRSF-EAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVD-CEKLDLAADCYMN 811 (967)
Q Consensus 734 ~~~~al~~~p~~-~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~-~g~~~~A~~~~~~ 811 (967)
+|+++++++|+. . ..++..|..+.. .+++++|..++++
T Consensus 226 ~ferAL~LnP~~~i----------------------------------------d~~v~YA~~l~~~~gd~~~a~~~L~k 265 (301)
T 3u64_A 226 AFEHLTRYCSAHDP----------------------------------------DHHITYADALCIPLNNRAGFDEALDR 265 (301)
T ss_dssp HHHHHHHHCCTTCS----------------------------------------HHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCc----------------------------------------hHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999953 3 677778888877 4889999999999
Q ss_pred HhccCcH
Q 002100 812 ALNIKHT 818 (967)
Q Consensus 812 Al~~~~~ 818 (967)
++..++.
T Consensus 266 AL~a~p~ 272 (301)
T 3u64_A 266 ALAIDPE 272 (301)
T ss_dssp HHHCCGG
T ss_pred HHcCCCC
Confidence 9985443
No 240
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.25 E-value=3.8e-06 Score=74.59 Aligned_cols=94 Identities=7% Similarity=-0.017 Sum_probs=76.1
Q ss_pred cEEEEEcCeEEEehhHHHhccC-HHHHHhhcCCCC----CCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHH-HHH
Q 002100 257 DMSFCIGNDEIRCVRYKIASLS-RPFRTMLYGGFI----ESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPR-LVL 330 (967)
Q Consensus 257 Dv~~~v~~~~~~~hr~vLa~~S-~~F~~~~~~~~~----e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~ 330 (967)
-|+|.|||+.|...+..|+... .+|..||.+... .....++-|. -+|..|+.||+|+.||.+ .++.+ ...
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fiD---Rdp~~F~~IL~~lr~g~l-~~p~~~~~~ 82 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLID---RDPTYFGPVLNYLRHGKL-VINKDLAEE 82 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEEC---SCHHHHHHHHHHHHHSCC-CCCTTSCHH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEec---CChHHHHHHHHHhCCCee-CCCCCCCHH
Confidence 4788999999999999998775 478999987531 1234567663 799999999999999999 44433 347
Q ss_pred HHHHHhchhChHHHHHHHHHHHHh
Q 002100 331 ELLSFANRFCCEELKSACDSYLAS 354 (967)
Q Consensus 331 ~ll~~A~~~~~~~l~~~c~~~l~~ 354 (967)
.++.-|++|+|+.|++.|.+.|.+
T Consensus 83 ~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 83 GVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhc
Confidence 889999999999999999998864
No 241
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.24 E-value=5.1e-07 Score=80.22 Aligned_cols=86 Identities=12% Similarity=0.023 Sum_probs=69.4
Q ss_pred HhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhhcCC--------chhHhhhhccchHHHHHHhhcchHHHHHHH
Q 002100 353 ASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQ--------NPNVMRIFCSAEARERLAMVGHASFVLYYF 424 (967)
Q Consensus 353 ~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~l~--------~~~~~~ll~s~~~~~r~~~~~~e~~~l~~~ 424 (967)
.+.++ ++||+.++.+|+.|+++.|.+.|.+||.+||..... .+.+..+|+++ +.++..+|.++
T Consensus 5 ~~~L~-~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~sd--------v~~E~~vf~av 75 (105)
T 2eqx_A 5 SSGVQ-VGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISDG--------VPCSQNPTEAI 75 (105)
T ss_dssp CCCCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHHTC--------EETTSCHHHHH
T ss_pred hccCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHcCC--------CCCHHHHHHHH
Confidence 35677 999999999999999999999999999999995444 44445555553 45778899999
Q ss_pred HHHhccCcccccchHHHHHHHHH
Q 002100 425 LSQIGMEEDMKSNTTVMLLERLV 447 (967)
Q Consensus 425 l~~l~~~~~~~~~~~~~ll~~l~ 447 (967)
+.|+..+++.|.....++++++.
T Consensus 76 ~~Wv~~d~~~R~~~~~~Ll~~VR 98 (105)
T 2eqx_A 76 EAWINFNKEEREAFAESLRTSLK 98 (105)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCHHHHHHHHHHHHHHHH
Confidence 99999988777777777776643
No 242
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.21 E-value=5e-06 Score=93.98 Aligned_cols=99 Identities=7% Similarity=-0.018 Sum_probs=79.5
Q ss_pred CChHHHHHHHHHhhc-----cCCCC---chHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCC-h---HHHHHHHHH
Q 002100 862 CDRDMAKSDLSMATQ-----LDPMR---TYPYRYRAAVLMDDHKEAEAIAELSRAIAF-----KPD-L---QLLHLRAAF 924 (967)
Q Consensus 862 ~~~~~A~~~l~~al~-----l~p~~---~~~~~~la~~~~~~g~~~eAi~~~~kal~~-----~p~-~---~~~~~~a~~ 924 (967)
|++++|+..++++++ +.|++ ...+.++|.+|..+|+|++|+.++++++++ .|+ + ..+.++|.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 455555555555554 34444 456889999999999999999999999975 344 2 288999999
Q ss_pred HHHcCChHHHHHHHHHHHhc-----CCCchhHHHHHHHHHh
Q 002100 925 HDSMGDHLHTQRDCEAALCL-----DPNHTDTLELYDKATE 960 (967)
Q Consensus 925 ~~~~g~~~~A~~~~~~al~~-----~P~~~~~l~l~~r~~~ 960 (967)
|..+|++++|+..|++|+++ .|+|+.+.++.+.+++
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIES 432 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHC
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHhc
Confidence 99999999999999999875 6999999999888764
No 243
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.20 E-value=8.3e-06 Score=76.45 Aligned_cols=88 Identities=17% Similarity=0.122 Sum_probs=82.0
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcC---cHHHHHHHHHHHhccC-C--ChhHHHHHHHHHHHhcCHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEEN---KLAAAITEINRIIGFK-V--SPDCLELRAWISIALEDYDGALRDV 609 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p--~~~~~~~la~~~~~~g~~~~A~~~~ 609 (967)
..+...|.+.++.+|.+..+.+++|.++...+ ++++++..++.+++.+ | ..++++.+|..|+++|+|++|.+.+
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 56777888888889999999999999999988 7779999999999999 7 5899999999999999999999999
Q ss_pred HHHHHhCCCchHHh
Q 002100 610 RALLTLDPSYMMFY 623 (967)
Q Consensus 610 ~~al~l~p~~~~~~ 623 (967)
+++|+.+|++..+.
T Consensus 95 ~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 95 RGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHCTTCHHHH
T ss_pred HHHHhcCCCCHHHH
Confidence 99999999999887
No 244
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.14 E-value=5.4e-06 Score=71.80 Aligned_cols=73 Identities=12% Similarity=0.041 Sum_probs=67.6
Q ss_pred CCCCchhHHHHHHHHHhcCc---HHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchH
Q 002100 549 DPTLSYPYKYRAILLVEENK---LAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMM 621 (967)
Q Consensus 549 ~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 621 (967)
+|+++..+..+|.+++..++ .++|...++++++.+| ++.+++.+|..++..|+|++|+..|+++++.+|..+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 68999999999999987666 7999999999999999 9999999999999999999999999999999998433
No 245
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.12 E-value=1.7e-05 Score=71.44 Aligned_cols=100 Identities=9% Similarity=0.025 Sum_probs=87.3
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHH---HHHHHHHHHhcC-CC--hHHHHHHHHHHHHcCChHHHHHHH
Q 002100 865 DMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAE---AIAELSRAIAFK-PD--LQLLHLRAAFHDSMGDHLHTQRDC 938 (967)
Q Consensus 865 ~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e---Ai~~~~kal~~~-p~--~~~~~~~a~~~~~~g~~~~A~~~~ 938 (967)
..+...|......++....+.+++|+++.+..+..+ +|..++..+... |. -+.++.+|..+.++|+|++|++.+
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 445566777777778888999999999999987776 999999999887 53 358999999999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHhhhhh
Q 002100 939 EAALCLDPNHTDTLELYDKATERVNE 964 (967)
Q Consensus 939 ~~al~~~P~~~~~l~l~~r~~~~~~~ 964 (967)
+.+|+..|+|.++..+..-+++++.+
T Consensus 98 ~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 98 RGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988753
No 246
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.03 E-value=2.6e-05 Score=88.26 Aligned_cols=111 Identities=14% Similarity=0.005 Sum_probs=87.6
Q ss_pred HHHhcCHHHHHHHHHHHHhcC-----Cc---hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcC
Q 002100 688 LLRLNSQKAAMRSLRLARNYS-----TS---EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSS 759 (967)
Q Consensus 688 ~~~~g~~~~A~~~l~~al~~~-----p~---~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~ 759 (967)
+..+|+|++|+..++++++.. |+ ....+.++|.+|..+|++++|+.++++++++...
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~--------------- 361 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRI--------------- 361 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---------------
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH---------------
Confidence 556889999999999999752 33 3567889999999999999999999999965431
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc-------cCcHH---HHHHHHHHHH
Q 002100 760 LNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN-------IKHTR---AHQGLARVYH 829 (967)
Q Consensus 760 ~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-------~~~~~---a~~~la~~~~ 829 (967)
.....+|..+..++++|.+|..+|++++|+..|++|++ ++|+. ++.+|+.+..
T Consensus 362 -----------------~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 362 -----------------FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp -----------------HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred -----------------HcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 12345567778999999999999999999999999987 45554 4455655554
Q ss_pred H
Q 002100 830 L 830 (967)
Q Consensus 830 ~ 830 (967)
.
T Consensus 425 e 425 (429)
T 3qwp_A 425 N 425 (429)
T ss_dssp H
T ss_pred H
Confidence 3
No 247
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.03 E-value=2.2e-05 Score=69.66 Aligned_cols=79 Identities=14% Similarity=-0.025 Sum_probs=67.2
Q ss_pred chHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------CC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHH
Q 002100 882 TYPYRYRAAVLMDDHKEAEAIAELSRAIAFK-------PD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLE 953 (967)
Q Consensus 882 ~~~~~~la~~~~~~g~~~eAi~~~~kal~~~-------p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~ 953 (967)
+.-.+.+|..+++.++|..|+.+|++|++.. +. ..++..+|.++.++|++++|+..+++++.++|+++.++.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4456789999999999999999999999863 12 358999999999999999999999999999999998865
Q ss_pred HHHHHHh
Q 002100 954 LYDKATE 960 (967)
Q Consensus 954 l~~r~~~ 960 (967)
-+.-++.
T Consensus 85 n~~~~~~ 91 (104)
T 2v5f_A 85 NLKYFEY 91 (104)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 5544443
No 248
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.02 E-value=1.9e-05 Score=89.12 Aligned_cols=94 Identities=14% Similarity=0.038 Sum_probs=77.7
Q ss_pred HHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccH
Q 002100 723 YDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKL 802 (967)
Q Consensus 723 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~ 802 (967)
...|+|++|+..+++++++.... ...+++..+..++++|.+|..+|+|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~--------------------------------lg~~Hp~~a~~~~nLa~~y~~~g~~ 356 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSV--------------------------------FEDSNVYMLHMMYQAMGVCLYMQDW 356 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTT--------------------------------BCTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred hhccCHHHHHHHHHHHHHHhhCc--------------------------------cChhchHHHHHHHHHHHHHHhhcCH
Confidence 35689999999999999654311 1223445668999999999999999
Q ss_pred HHHHHHHHHHhc-------cCcHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 002100 803 DLAADCYMNALN-------IKHTR---AHQGLARVYHLKNQRKAAYDEMTKLIEKA 848 (967)
Q Consensus 803 ~~A~~~~~~Al~-------~~~~~---a~~~la~~~~~~g~~~~A~~~~~~al~~~ 848 (967)
++|+.+|+++++ .+|++ .+.+||.+|..+|++++|+..|++++++.
T Consensus 357 ~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 357 EGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 999999999987 45555 79999999999999999999999998853
No 249
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.99 E-value=8.5e-06 Score=72.56 Aligned_cols=82 Identities=27% Similarity=0.367 Sum_probs=63.9
Q ss_pred cEEEE-EcCeEEEehhHHHhccCHHHHHhhcC--CCCCCccceEEeccCCCCHHHHHHHHHhHcCCC--------CC--C
Q 002100 257 DMSFC-IGNDEIRCVRYKIASLSRPFRTMLYG--GFIESRREKVNFSQNGISVEAMRAAEEFSRTKM--------LD--S 323 (967)
Q Consensus 257 Dv~~~-v~~~~~~~hr~vLa~~S~~F~~~~~~--~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~--------~~--~ 323 (967)
-|+|+ .+|+.|.+++. +|..|..++.|+.+ .+.|+....|.|+. |+..+++.|++|++... ++ .
T Consensus 18 ~v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~Iplpn--V~s~iL~kVieyc~~h~~~~~~~~~i~~w~ 94 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNFRE--IPSHVLSKVCMYFTYKVRYTNSSTEIPEFP 94 (112)
T ss_dssp EEEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEECSS--CCHHHHHHHHHHHHHHHHHSSCSSCCCCCC
T ss_pred EEEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeCCC--CCHHHHHHHHHHHHHhhhccCCcCCCCCcc
Confidence 47776 49999999999 57899999999985 45666667899976 99999999999997422 22 6
Q ss_pred CCHHHHHHHHHHhchhCh
Q 002100 324 FDPRLVLELLSFANRFCC 341 (967)
Q Consensus 324 ~~~~~~~~ll~~A~~~~~ 341 (967)
++.+.+.+|+.+|++++|
T Consensus 95 vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 95 IAPEIALELLMAANFLDC 112 (112)
T ss_dssp CCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCc
Confidence 889999999999999875
No 250
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.88 E-value=6.2e-05 Score=85.14 Aligned_cols=96 Identities=13% Similarity=0.016 Sum_probs=79.2
Q ss_pred HHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc
Q 002100 720 WILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC 799 (967)
Q Consensus 720 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~ 799 (967)
.-+..+|++++|+..+++++++.... ....++.....++++|.+|..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~--------------------------------lg~~h~~~~~~~~~L~~~y~~~ 342 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSER--------------------------------LPDINIYQLKVLDCAMDACINL 342 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCC--------------------------------CCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCc--------------------------------CCccchHHHHHHHHHHHHHHhh
Confidence 34567899999999999999765411 1223445568899999999999
Q ss_pred ccHHHHHHHHHHHhc-------cCcHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002100 800 EKLDLAADCYMNALN-------IKHTR---AHQGLARVYHLKNQRKAAYDEMTKLIEK 847 (967)
Q Consensus 800 g~~~~A~~~~~~Al~-------~~~~~---a~~~la~~~~~~g~~~~A~~~~~~al~~ 847 (967)
|+|++|+.+++++++ .+|+. .+.+||.+|..+|++++|+..|++++++
T Consensus 343 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 343 GLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999987 44554 7999999999999999999999999875
No 251
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.75 E-value=0.00015 Score=64.22 Aligned_cols=73 Identities=15% Similarity=0.009 Sum_probs=64.6
Q ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHhcc---------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHH
Q 002100 787 QALNNLGSVYVDCEKLDLAADCYMNALNI---------KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEK 857 (967)
Q Consensus 787 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~~---------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 857 (967)
.-.+.+|..++..++|..|+.+|++|++. ....++..||.+++++|+++.|+..++++++..|++..+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 56788999999999999999999999982 123589999999999999999999999999999999888766
Q ss_pred HH
Q 002100 858 RS 859 (967)
Q Consensus 858 ~~ 859 (967)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 252
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.62 E-value=0.00047 Score=62.11 Aligned_cols=88 Identities=17% Similarity=0.089 Sum_probs=79.7
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHH---HHHHHHHHhccC-C--ChhHHHHHHHHHHHhcCHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAA---AITEINRIIGFK-V--SPDCLELRAWISIALEDYDGALRDV 609 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p--~~~~~~~la~~~~~~g~~~~A~~~~ 609 (967)
..+...|.+.+..++....+.+.+|.++....+... +|..++.++..+ | .-++++.+|..++++|+|++|...+
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 566677888888888889999999999999887766 999999999988 6 6789999999999999999999999
Q ss_pred HHHHHhCCCchHHh
Q 002100 610 RALLTLDPSYMMFY 623 (967)
Q Consensus 610 ~~al~l~p~~~~~~ 623 (967)
+.+|+.+|+|..+.
T Consensus 98 ~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 98 RGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHCTTCHHHH
T ss_pred HHHHHhCCCCHHHH
Confidence 99999999999887
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.61 E-value=0.00047 Score=62.98 Aligned_cols=86 Identities=10% Similarity=0.021 Sum_probs=77.0
Q ss_pred CCCchHHHHHHHHHHhCCC---HHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHH
Q 002100 879 PMRTYPYRYRAAVLMDDHK---EAEAIAELSRAIAFKPD--LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLE 953 (967)
Q Consensus 879 p~~~~~~~~la~~~~~~g~---~~eAi~~~~kal~~~p~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~ 953 (967)
.-...+.+++|+++.+..+ ..++|..++..+...|. -+.++.+|..+.++|+|++|+++.+.+|+..|+|.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 5567889999999999865 45799999999998886 359999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhh
Q 002100 954 LYDKATERVNE 964 (967)
Q Consensus 954 l~~r~~~~~~~ 964 (967)
+...+++++.+
T Consensus 116 Lk~~Ie~~i~k 126 (144)
T 1y8m_A 116 LKSMVEDKIQK 126 (144)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988753
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.58 E-value=0.00033 Score=63.17 Aligned_cols=84 Identities=11% Similarity=0.023 Sum_probs=75.6
Q ss_pred CchHHHHHHHHHHhCCC---HHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 002100 881 RTYPYRYRAAVLMDDHK---EAEAIAELSRAIAFKPD--LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELY 955 (967)
Q Consensus 881 ~~~~~~~la~~~~~~g~---~~eAi~~~~kal~~~p~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~ 955 (967)
.+.+.+++|+++.+..+ ..++|..++..+...|. -+.++.+|..+.++|+|++|+++.+.+|+..|+|.++..+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 56888999999999865 45799999999998885 35899999999999999999999999999999999999999
Q ss_pred HHHHhhhhh
Q 002100 956 DKATERVNE 964 (967)
Q Consensus 956 ~r~~~~~~~ 964 (967)
..+++++.+
T Consensus 119 ~~Ie~ki~k 127 (134)
T 3o48_A 119 SMVEDKIQK 127 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998763
No 255
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=97.38 E-value=0.00026 Score=69.01 Aligned_cols=95 Identities=7% Similarity=-0.022 Sum_probs=74.5
Q ss_pred cEEEEEcCeEEEehhHHHhccC-HHHHHhhcCCC--C--CCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHH-HHH
Q 002100 257 DMSFCIGNDEIRCVRYKIASLS-RPFRTMLYGGF--I--ESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPR-LVL 330 (967)
Q Consensus 257 Dv~~~v~~~~~~~hr~vLa~~S-~~F~~~~~~~~--~--e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~ 330 (967)
=|+|.|||..|...+..|.... .+|..||.+.. . .....++-|. -+|..|+.||+|+.+|.+ .++++ ...
T Consensus 13 ~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFID---RDP~~F~~ILnyLRtG~L-~lP~~~~~~ 88 (202)
T 3drx_A 13 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLID---RDPTYFGPVLNYLRHGKL-VINKDLAEE 88 (202)
T ss_dssp EEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEEC---SCSTTHHHHHHHHHHSCC-CCCTTSCHH
T ss_pred EEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEec---CChHHHHHHHHHhcCCcc-CCCCCCCHH
Confidence 4778899999999999998764 37899998652 1 1134567674 699999999999999999 44433 236
Q ss_pred HHHHHhchhChHHHHHHHHHHHHhh
Q 002100 331 ELLSFANRFCCEELKSACDSYLASM 355 (967)
Q Consensus 331 ~ll~~A~~~~~~~l~~~c~~~l~~~ 355 (967)
.++.-|++|+|+.|++.|...|.+.
T Consensus 89 ~l~eEA~FygL~~Lv~~l~~~i~er 113 (202)
T 3drx_A 89 GVLEEAEFYNITSLIKLVKDKIRER 113 (202)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 7899999999999999999988644
No 256
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.95 E-value=0.03 Score=64.50 Aligned_cols=161 Identities=12% Similarity=0.044 Sum_probs=120.2
Q ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhcc--CcH-HHHHHHHHHHHHhC---------CHHHHHHHHHHHHHHcc-CCHHH
Q 002100 788 ALNNLGSVYVDCEKLDLAADCYMNALNI--KHT-RAHQGLARVYHLKN---------QRKAAYDEMTKLIEKAR-NNASA 854 (967)
Q Consensus 788 a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~-~a~~~la~~~~~~g---------~~~~A~~~~~~al~~~p-~~~~~ 854 (967)
.++.+-..+.+.|+.++|++.|++..+. .+. ..+..|-.++...+ ..+.|.+.|++..+..- .+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3555557788999999999999998873 333 25555555554433 36889999988776542 24555
Q ss_pred HHHHH----ccCChHHHHHHHHHhhcc--CCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHH
Q 002100 855 YEKRS----EYCDRDMAKSDLSMATQL--DPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAF--KPDLQLLHLRAAFHD 926 (967)
Q Consensus 855 ~~~~~----~~~~~~~A~~~l~~al~l--~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~--~p~~~~~~~~a~~~~ 926 (967)
|..+- ..|+.++|...|++..+. .| +...|..+-..|.+.|+.++|.+.|++..+. .|+...|..+-..+.
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 54443 348999999999987764 34 4667888888999999999999999998864 566678888999999
Q ss_pred HcCChHHHHHHHHHHHhc--CCCch
Q 002100 927 SMGDHLHTQRDCEAALCL--DPNHT 949 (967)
Q Consensus 927 ~~g~~~~A~~~~~~al~~--~P~~~ 949 (967)
+.|+.++|.+.+++..+. .|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHH
Confidence 999999999999988654 46543
No 257
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.92 E-value=0.0089 Score=54.94 Aligned_cols=120 Identities=13% Similarity=-0.017 Sum_probs=76.7
Q ss_pred HhccCcHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHH
Q 002100 812 ALNIKHTRAHQGLARVYHLKNQR------KAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPY 885 (967)
Q Consensus 812 Al~~~~~~a~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~ 885 (967)
.+.+++.+.|........+.|+. +.-++.|++++..-|... -.......+.|
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k----------------------~~~wrrYI~LW 64 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK----------------------YGQNESFARIQ 64 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG----------------------GTTCHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc----------------------cccHHHHHHHH
Confidence 44566666777777777777777 666677777777666310 00011123344
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHH
Q 002100 886 RYRAAVLMDDHKEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLEL 954 (967)
Q Consensus 886 ~~la~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l 954 (967)
...|. +...++.++|...|+.+++..... .++...|.+-.++|+..+|.+.+.+|+.+.|...++++.
T Consensus 65 IrYA~-~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 65 VRFAE-LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HHHHH-HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred HHHHH-HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 44553 345577778888888877765553 377777778888888888888888888888877777664
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.81 E-value=0.0056 Score=57.59 Aligned_cols=136 Identities=12% Similarity=0.025 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchh---------HHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHH
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEH---------EKLVYEGWILYDTGHREEALAKAEESISIQRSFEAF 748 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~---------~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 748 (967)
.+.++.....++..+.|+.|+.....++....+++ ++++++|.+++..++|..|...|++++.....-...
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 35667777888899999999998888766543333 478999999999999999999999998654411100
Q ss_pred HHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc-cCcHHHHHHHHHH
Q 002100 749 FLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN-IKHTRAHQGLARV 827 (967)
Q Consensus 749 ~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-~~~~~a~~~la~~ 827 (967)
- ... .. .. .+.......+.....+..+.++.+|.+.+++++|+..++..-. ...+.....||++
T Consensus 100 ~-s~~----~~---------~~-~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakL 164 (167)
T 3ffl_A 100 S-KVR----PS---------TG-NSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANL 164 (167)
T ss_dssp --------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHH
T ss_pred C-Ccc----cc---------cc-ccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHH
Confidence 0 000 00 00 0000000001233456778899999999999999998876533 3444566677776
Q ss_pred H
Q 002100 828 Y 828 (967)
Q Consensus 828 ~ 828 (967)
|
T Consensus 165 y 165 (167)
T 3ffl_A 165 Y 165 (167)
T ss_dssp C
T ss_pred h
Confidence 5
No 259
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.49 E-value=0.064 Score=61.67 Aligned_cols=153 Identities=9% Similarity=0.033 Sum_probs=109.9
Q ss_pred HHHhhcCChHHHHHHHHHHHHhC--c-hhHHHHHHHHHHhcC---------ChHHHHHHHHHHHhc-c-Cc------chh
Q 002100 465 VVMLEREEYKDAQNWFKAAVEAG--H-IYSLVGVARTKFKRG---------HKYSAYKLMNSLISD-Y-TP------VGW 524 (967)
Q Consensus 465 ~~~~~~g~y~~A~~~f~~al~~~--~-~~a~~~la~~~~~~g---------~~~~A~~~l~~~i~~-~-~~------~g~ 524 (967)
..+.+.|++++|++.|++..+.+ | ......+-.++.+.+ ....|.+++.+.... . |+ +-.
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~ 113 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGAR 113 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 56678999999999999998874 2 333333333443333 246788888887662 1 22 223
Q ss_pred HHHHHhhcCChHHHHHHHHHhHhhC-CCCchhHHHHHHHHHhcCcHHHHHHHHHHHhcc--CCChhHHHHHHHHHHHhcC
Q 002100 525 MYQERSLYCSGKEKMMDLNTATELD-PTLSYPYKYRAILLVEENKLAAAITEINRIIGF--KVSPDCLELRAWISIALED 601 (967)
Q Consensus 525 ~~~~~~~y~~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~la~~~~~~g~ 601 (967)
.|...+ +.++|+..|++..+.. +-+...|..+-..|.+.|+.++|.+.|++..+. .|+...|..+-..|.+.|+
T Consensus 114 ~~~~~g---~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~ 190 (501)
T 4g26_A 114 LAVAKD---DPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN 190 (501)
T ss_dssp HHHHHT---CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhcC---CHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC
Confidence 344444 5599999999887652 225667888888899999999999999987754 5588899999999999999
Q ss_pred HHHHHHHHHHHHHh--CCCch
Q 002100 602 YDGALRDVRALLTL--DPSYM 620 (967)
Q Consensus 602 ~~~A~~~~~~al~l--~p~~~ 620 (967)
.++|.+.+++.-+. .|+..
T Consensus 191 ~d~A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 191 ADKVYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp HHHHHHHHHHHHHHTSSBCHH
T ss_pred HHHHHHHHHHHHHhCCCcCHH
Confidence 99999999887664 45533
No 260
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.43 E-value=0.024 Score=52.13 Aligned_cols=116 Identities=11% Similarity=0.032 Sum_probs=86.8
Q ss_pred cCCchhHHHHHHHHHHHHcCCh------HHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCC
Q 002100 707 YSTSEHEKLVYEGWILYDTGHR------EEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPS 780 (967)
Q Consensus 707 ~~p~~~~a~~~lg~~~~~~g~~------~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~ 780 (967)
..|++++.|......+.+.|+. ++-+..|++|+..-|-.. ..
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k--------------------------------~~ 55 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK--------------------------------YG 55 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG--------------------------------GT
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc--------------------------------cc
Confidence 5788999999988888888998 888889999987666111 00
Q ss_pred CCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHH
Q 002100 781 DGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAY 855 (967)
Q Consensus 781 ~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 855 (967)
........|...+.. ...++.++|.+.|+.+++. ....+|...|....++|+...|.+.+.+++...|.....+
T Consensus 56 ~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 56 QNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp TCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred cHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 111223455555544 5669999999999999874 2234888899999999999999999999999999765543
No 261
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.34 E-value=0.034 Score=50.77 Aligned_cols=74 Identities=15% Similarity=0.069 Sum_probs=66.6
Q ss_pred CCCchhHHHHHHHHHhcCcH---HHHHHHHHHHhccCC--ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 550 PTLSYPYKYRAILLVEENKL---AAAITEINRIIGFKV--SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 550 P~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
.-...+.++.|.++....+. .+++..++..+...| .-++++.+|.-++++|+|++|.++.+.+|+.+|+|..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 45678899999999988754 579999999999888 578999999999999999999999999999999998887
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.22 E-value=0.8 Score=50.18 Aligned_cols=99 Identities=15% Similarity=0.010 Sum_probs=73.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHH
Q 002100 717 YEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVY 796 (967)
Q Consensus 717 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~ 796 (967)
.+|.+|+..|+|.+|.+.+.+...--.. ..+.....+.+..-..+|
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~----------------------------------~dd~~~llev~lle~~~~ 149 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKK----------------------------------LDDKNLLVEVQLLESKTY 149 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTT----------------------------------SSCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhc----------------------------------cccchhHHHHHHHHHHHH
Confidence 7899999999999999999887732210 001112235667778889
Q ss_pred HhcccHHHHHHHHHHHhc----c-CcHH----HHHHHHHHHH-HhCCHHHHHHHHHHHHHHcc
Q 002100 797 VDCEKLDLAADCYMNALN----I-KHTR----AHQGLARVYH-LKNQRKAAYDEMTKLIEKAR 849 (967)
Q Consensus 797 ~~~g~~~~A~~~~~~Al~----~-~~~~----a~~~la~~~~-~~g~~~~A~~~~~~al~~~p 849 (967)
...+++.++...|.+|.. + .|+. ....-|..+. ..++|..|...|-.+++...
T Consensus 150 ~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 150 HALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 999999999999999876 2 3332 4555777888 89999999999988876543
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.17 E-value=0.03 Score=52.67 Aligned_cols=130 Identities=12% Similarity=-0.081 Sum_probs=72.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhC---ch--------hHHHHHHHHHHhcCChHHHHHHHHHHHhccCcch---h
Q 002100 459 AFHQLGVVMLEREEYKDAQNWFKAAVEAG---HI--------YSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVG---W 524 (967)
Q Consensus 459 a~~~lG~~~~~~g~y~~A~~~f~~al~~~---~~--------~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g---~ 524 (967)
+++.-...++..+.|+.|+-....++... +. .+...+|.+++.+|++..|...|++++....... .
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44445555666666666666666655541 11 1445566666666666666666666555221110 0
Q ss_pred HHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 002100 525 MYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWIS 596 (967)
Q Consensus 525 ~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~ 596 (967)
.....+. .........+ +.+.+..+..|.||.+.+++++|+..++.+-...-++.....+|.+|
T Consensus 102 ~~~~~~~-------~ss~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGN-------SASTPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp ----------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred ccccccc-------cCCCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 0000000 0000001111 34557888999999999999999999876544444788888888876
No 264
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.02 E-value=0.04 Score=49.67 Aligned_cols=72 Identities=15% Similarity=0.068 Sum_probs=64.6
Q ss_pred CchhHHHHHHHHHhcCcH---HHHHHHHHHHhccCC--ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 552 LSYPYKYRAILLVEENKL---AAAITEINRIIGFKV--SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
.+.+-++.|.++....+. .+++..++.++..+| .-++++.+|..++++|+|++|.+..+.+|+..|+|..+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 457788999988887654 579999999999888 588999999999999999999999999999999999887
No 265
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.83 E-value=4 Score=47.63 Aligned_cols=137 Identities=9% Similarity=-0.099 Sum_probs=90.0
Q ss_pred HHhcccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHH
Q 002100 796 YVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSM 873 (967)
Q Consensus 796 ~~~~g~~~~A~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~ 873 (967)
.+..++++.|...|++.-.. ......+.+|+++..+|+.++|...|.++.. +.+-..+.....+|.... . .
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~~fYg~lAa~~Lg~~~~-~---~- 367 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QRGFYPMVAAQRIGEEYE-L---K- 367 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSHHHHHHHHHTTCCCC-C---C-
T ss_pred HHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCChHHHHHHHHcCCCCC-C---C-
Confidence 34669999999999876552 3455889999999999999999999999975 333333222223322100 0 0
Q ss_pred hhccCCCCc-----hHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 874 ATQLDPMRT-----YPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 874 al~l~p~~~-----~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~ 940 (967)
.....+... ..-..++..+...|....|...+..++... ++.-...++.+....|.+..++....+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~-~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 368 IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK-SKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 001111111 133567788899999999999999887653 344445677788888888877765543
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.48 E-value=0.49 Score=51.90 Aligned_cols=165 Identities=13% Similarity=0.034 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChH
Q 002100 457 QLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGK 536 (967)
Q Consensus 457 a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~ 536 (967)
-.+.+.||..|...|++++-.+.+...... ...... .++.+..+.+++.+....... +
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~k----------ak~~k~v~~l~~~~~~~~~~~---------~ 76 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPF---LSSISK----------AKAAKLVRSLVDMFLDMDAGT---------G 76 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTG---GGGSCH----------HHHHHHHHHHHHHHTTSCCCH---------H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---HHHhch----------HHHHHHHHHHHHHHhcCCCcH---------H
Confidence 357889999999999999999888765443 222221 134556666666554332221 1
Q ss_pred HHHHHHHHhHhhCCCCchhH------HHHHHHHHhcCcHHHHHHHHHHHhcc----C-C--ChhHHHHHHHHHHHhcCHH
Q 002100 537 EKMMDLNTATELDPTLSYPY------KYRAILLVEENKLAAAITEINRIIGF----K-V--SPDCLELRAWISIALEDYD 603 (967)
Q Consensus 537 ~A~~~~~~al~l~P~~~~~~------~~la~~~~~~g~~~~A~~~~~~al~~----~-p--~~~~~~~la~~~~~~g~~~ 603 (967)
.-+....++++-.-+.-..| ..+|..|+..|+|.+|++.+.++... + + -.+.+..-..+|..++++.
T Consensus 77 ~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~ 156 (394)
T 3txn_A 77 IEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLP 156 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHH
Confidence 11222222222111111122 27899999999999999999888763 2 2 3668888899999999999
Q ss_pred HHHHHHHHHHHhC---CCchHHhhhhhhhhhHhhhHH-HhhchhhH
Q 002100 604 GALRDVRALLTLD---PSYMMFYGQLHGDNLVETLQP-LVQQWSQA 645 (967)
Q Consensus 604 ~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~l~~-~~~~~~~A 645 (967)
++...|.++.+.. +-++...+.+. ..-|.++. ..++|.+|
T Consensus 157 k~k~~l~~a~~~~~ai~~~p~i~a~i~--~~~Gi~~l~~~rdyk~A 200 (394)
T 3txn_A 157 KARAALTSARTTANAIYCPPKVQGALD--LQSGILHAADERDFKTA 200 (394)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHH--HHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHhhhccCCCCHHHHHHHH--HHhhHHHHHhccCHHHH
Confidence 9999999987663 12333333222 45577777 78889888
No 267
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=95.47 E-value=0.015 Score=52.51 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=66.4
Q ss_pred cEEEEEcCeEEEehhHHHhccCHHHHHhhcCC----CCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHH-HHHH
Q 002100 257 DMSFCIGNDEIRCVRYKIASLSRPFRTMLYGG----FIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPR-LVLE 331 (967)
Q Consensus 257 Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~----~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~~ 331 (967)
=|+|.|||..|..-+..|..... .||... +......++-|. =+|..|+.||.|+.+|.+ .++++ .+..
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~FiD---Rdp~~F~~ILnflR~G~l-~~p~~~~~~~ 86 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFFD---RDPEVFRCVLNFYRTGKL-HYPRYECISA 86 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEEC---SCHHHHHHHHHHHHHSCB-CCCTTSCHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEEc---CChHHHHHHHHHHhcCCC-CCCCCcCHHH
Confidence 47889999999999999975422 234321 112234567775 599999999999999999 45443 4788
Q ss_pred HHHHhchhChHHH--HHHHHHHHHhh
Q 002100 332 LLSFANRFCCEEL--KSACDSYLASM 355 (967)
Q Consensus 332 ll~~A~~~~~~~l--~~~c~~~l~~~ 355 (967)
++.-|++|+|+.+ ...|...+.+.
T Consensus 87 l~~Ea~fy~i~~l~l~~cC~~~~~~~ 112 (124)
T 1s1g_A 87 YDDELAFYGILPEIIGDCCYEEYKDR 112 (124)
T ss_dssp HHHHHHHTTCCGGGBCHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 9999999999987 35555555443
No 268
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=95.26 E-value=0.0042 Score=55.36 Aligned_cols=96 Identities=6% Similarity=0.036 Sum_probs=69.4
Q ss_pred cEEEEEcCeEEEehhHHHhccCH-HHHHhhcCCC-CCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHH-HHHHHH
Q 002100 257 DMSFCIGNDEIRCVRYKIASLSR-PFRTMLYGGF-IESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPR-LVLELL 333 (967)
Q Consensus 257 Dv~~~v~~~~~~~hr~vLa~~S~-~F~~~~~~~~-~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~~ll 333 (967)
=|+|.|||..|...+..|..... .|..||.+.. ......++-|. -+|..|+.||.|+.+|++ .++++ .+..++
T Consensus 6 ~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~FiD---Rdp~~F~~ILnylR~G~l-~~p~~~~~~~~~ 81 (115)
T 3kvt_A 6 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFD---RHPGVFAQIINYYRSGKL-HYPTDVCGPLFE 81 (115)
T ss_dssp EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEEC---SCTTTHHHHHHHHHHSCB-CCCSSSCHHHHH
T ss_pred EEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEEe---cChHHHHHHHHHhcCCCC-CCCCcccHHHHH
Confidence 37889999999999999986633 4566665432 12345577774 599999999999999999 44432 457889
Q ss_pred HHhchhChHHHH--HHHHHHHHhhC
Q 002100 334 SFANRFCCEELK--SACDSYLASMV 356 (967)
Q Consensus 334 ~~A~~~~~~~l~--~~c~~~l~~~~ 356 (967)
.-|++|+|+... .-|...+.+.-
T Consensus 82 ~Ea~fy~i~~~~l~~CC~~~~~~~~ 106 (115)
T 3kvt_A 82 EELEFWGLDSNQVEPCCWMTYTAHR 106 (115)
T ss_dssp HHHHHHTCCGGGBCGGGSHHHHSCC
T ss_pred HHHHHhCCChHHHHHHHHHHHHhcc
Confidence 999999998763 23555555443
No 269
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=94.78 E-value=0.016 Score=50.12 Aligned_cols=84 Identities=7% Similarity=-0.041 Sum_probs=60.0
Q ss_pred EEEEEcCeEEEehhHHHhccCH-HHHHhhcC-CCCCCccceEEeccCCCCHHHHHHHHHhHcC-CCCCCCCH-HHHHHHH
Q 002100 258 MSFCIGNDEIRCVRYKIASLSR-PFRTMLYG-GFIESRREKVNFSQNGISVEAMRAAEEFSRT-KMLDSFDP-RLVLELL 333 (967)
Q Consensus 258 v~~~v~~~~~~~hr~vLa~~S~-~F~~~~~~-~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt-~~~~~~~~-~~~~~ll 333 (967)
|+|.|||..|...+..|...-. .+..|+.. ........++-|. -+|..|+.||.|+.| |++ .+++ ..+..++
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFiD---Rdp~~F~~ILnflR~~G~l-~~p~~~~~~~~~ 78 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFD---RNRPSFDAILYFYQSGGRL-RRPVNVPLDVFS 78 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEEC---SCSTTHHHHHHHHHTTSCC-CCCTTSCHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEEc---CChHHHHHHHHHHhcCCcc-cCCCCCCHHHHH
Confidence 7889999999999999965421 23333321 1112245577774 599999999999999 898 4433 2467889
Q ss_pred HHhchhChHHHH
Q 002100 334 SFANRFCCEELK 345 (967)
Q Consensus 334 ~~A~~~~~~~l~ 345 (967)
.-|++|+|+.+.
T Consensus 79 ~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 79 EEIKFYELGENA 90 (100)
T ss_dssp HHHHHTTCCHHH
T ss_pred HHHHHcCCCHHH
Confidence 999999998753
No 270
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=94.65 E-value=0.013 Score=51.26 Aligned_cols=88 Identities=13% Similarity=0.139 Sum_probs=63.2
Q ss_pred EEEEEcCeEEEehhHHHhccCHHHHHhhcCC----CCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHH-HHHHH
Q 002100 258 MSFCIGNDEIRCVRYKIASLSRPFRTMLYGG----FIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPR-LVLEL 332 (967)
Q Consensus 258 v~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~----~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~~l 332 (967)
|+|.|||..|...+..|..... .||... +......++-|. =+|..|+.||.|+.||.+ .++++ .+..+
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~FiD---Rdp~~F~~ILnflR~g~l-~~p~~~~~~~l 74 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFFD---RDPDIFRHILNFYRTGKL-HYPRHECISAY 74 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEEC---SCTTTHHHHHHHHHHSCB-CCCTTSCHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEEe---CCcHHHHHHHHHHhcCCC-CCCCCcCHHHH
Confidence 7899999999999999976432 233321 111234567775 599999999999999999 44433 47889
Q ss_pred HHHhchhChHHH--HHHHHHHH
Q 002100 333 LSFANRFCCEEL--KSACDSYL 352 (967)
Q Consensus 333 l~~A~~~~~~~l--~~~c~~~l 352 (967)
+.-|++|+|+.+ ...|....
T Consensus 75 ~~Ea~fy~i~~l~~~~cc~~~~ 96 (105)
T 1nn7_A 75 DEELAFFGLIPEIIGDCCYEEY 96 (105)
T ss_dssp HHHHHHHTCCSCCBCHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999986 33454444
No 271
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=94.57 E-value=0.023 Score=52.40 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=65.8
Q ss_pred cEEEEEcCeEEEehhHHHhccCHHHHHhhcCC----CCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHH-HHHH
Q 002100 257 DMSFCIGNDEIRCVRYKIASLSRPFRTMLYGG----FIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPR-LVLE 331 (967)
Q Consensus 257 Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~----~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~~ 331 (967)
=|+|.|||..|...+..|.... ..||... +......++-|. =++..|+.||+|+.+|.+ .++++ .+..
T Consensus 36 ~V~LNVGG~~F~T~~~TL~~~P---~S~L~~~~~~~~~~~~~g~yFiD---Rdp~~F~~ILnflR~G~l-~~p~~~~~~~ 108 (140)
T 2nz0_B 36 LIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFFD---RDPEVFRCVLNFYRTGKL-HYPRYECISA 108 (140)
T ss_dssp EEEEEETTEEEEEEHHHHHTCT---TSTTTSGGGGGSEETTTTEEEEC---SCHHHHHHHHHHHHHSSB-CCCTTSCHHH
T ss_pred EEEEEECCEEEEeeHHHHhcCC---CeeecccCCcccccCCCCeEEEe---CCcHHHHHHHHHHhcCCc-CCCCCcCHHH
Confidence 4888999999999999997542 2344331 111234567775 599999999999999999 44433 4788
Q ss_pred HHHHhchhChHHH--HHHHHHHHHhh
Q 002100 332 LLSFANRFCCEEL--KSACDSYLASM 355 (967)
Q Consensus 332 ll~~A~~~~~~~l--~~~c~~~l~~~ 355 (967)
++.-|++|+|+.+ ...|...+...
T Consensus 109 l~eEa~fy~i~~l~l~~CC~~~~~~~ 134 (140)
T 2nz0_B 109 YDDELAFYGILPEIIGDCCYEEYKDR 134 (140)
T ss_dssp HHHHHHHHTCCGGGBCTTTHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 9999999999987 33455544443
No 272
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.18 E-value=11 Score=43.91 Aligned_cols=118 Identities=10% Similarity=-0.089 Sum_probs=60.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCCHHH-HHH---HH--cc--CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCC
Q 002100 825 ARVYHLKNQRKAAYDEMTKLIEKARNNASA-YEK---RS--EY--CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDH 896 (967)
Q Consensus 825 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~---~~--~~--~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g 896 (967)
+.......+.+.|...+.......+-+... ... .+ .. +...++...+.+.....+++ .....++...++.|
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~r~Alr~~ 299 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLIERRVRMALGTG 299 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCCh-HHHHHHHHHHHHCC
Confidence 333344446666766666554433222211 111 11 11 22445555555544333322 22333333344557
Q ss_pred CHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 897 KEAEAIAELSRAIAFKP-DLQLLHLRAAFHDSMGDHLHTQRDCEAALC 943 (967)
Q Consensus 897 ~~~eAi~~~~kal~~~p-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 943 (967)
+++.|...|++.-.... .....+.+|.++..+|+.++|...|+++..
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777777765533221 234667777777777777777777777764
No 273
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.18 E-value=2.4 Score=51.53 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=27.2
Q ss_pred HhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002100 797 VDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKL 844 (967)
Q Consensus 797 ~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 844 (967)
...|++++|.+.. ..++....|..+|..+.+.++++.|...|.++
T Consensus 663 l~~~~~~~A~~~~---~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLL---TDESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHH---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHH---HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4556666665553 33455556666666666666666666666654
No 274
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.86 E-value=0.21 Score=59.53 Aligned_cols=60 Identities=15% Similarity=0.013 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEES 738 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~a 738 (967)
.++..++..++..|+++-|+.+-++++...|.+...|+.|+.+|..+|+++.|+-.+...
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 456667888899999999999999999999999999999999999999999999877654
No 275
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.29 E-value=1.2 Score=52.90 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 555 PYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 555 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
.+...+..+...|+|+-|++.-++++...| +...|+.|+.+|..+|+|+.|+-.++..
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 455567788889999999999999999999 8999999999999999999999776554
No 276
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=91.69 E-value=0.023 Score=54.19 Aligned_cols=7 Identities=43% Similarity=0.553 Sum_probs=2.6
Q ss_pred CCCCCCC
Q 002100 58 GSSVGEK 64 (967)
Q Consensus 58 ~~~~~~~ 64 (967)
||.||.+
T Consensus 192 ~~~~~~~ 198 (215)
T 2l6f_A 192 GGSGGSG 198 (215)
Confidence 3333333
No 277
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.31 E-value=4.9 Score=48.71 Aligned_cols=100 Identities=20% Similarity=0.045 Sum_probs=58.3
Q ss_pred HHHHhcCcHHHHHH-HHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHh
Q 002100 561 ILLVEENKLAAAIT-EINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLV 639 (967)
Q Consensus 561 ~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~ 639 (967)
......+++++|.+ .+ ..-|+...+...+..+...|.+++|+...+ +| ... -.+....
T Consensus 607 ~~~~~~~~~~~a~~~~l----~~i~~~~~~~~~~~~l~~~~~~~~a~~~~~-----~~---~~~---------f~~~l~~ 665 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVL----PNVEGKDSLTKIARFLEGQEYYEEALNISP-----DQ---DQK---------FELALKV 665 (814)
T ss_dssp HHHHHTTCHHHHHHHTG----GGCCCHHHHHHHHHHHHHTTCHHHHHHHCC-----CH---HHH---------HHHHHHH
T ss_pred hHHHHhCCHHHHHHHHH----hcCCchHHHHHHHHHHHhCCChHHheecCC-----Cc---chh---------eehhhhc
Confidence 34456788888865 33 111112233566667777888888776442 11 111 1234556
Q ss_pred hchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 640 QQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLA 704 (967)
Q Consensus 640 ~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~a 704 (967)
++++.| ++.. ...+++..|..+|..+.+.++++.|+++|.++
T Consensus 666 ~~~~~A------------------~~~~-----~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 666 GQLTLA------------------RDLL-----TDESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHH------------------HHHH-----TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHH------------------HHHH-----HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 667776 2221 22345677788888888888888888887765
No 278
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.29 E-value=13 Score=39.31 Aligned_cols=48 Identities=13% Similarity=0.193 Sum_probs=29.9
Q ss_pred cchHHHHHHHHHHHhhhc-----hHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 002100 436 SNTTVMLLERLVESATES-----WQKQLAFHQLGVVMLEREEYKDAQNWFKAA 483 (967)
Q Consensus 436 ~~~~~~ll~~l~~~~~~~-----~~~a~a~~~lG~~~~~~g~y~~A~~~f~~a 483 (967)
++...+.+.++.+..... .+....+.-+..-|.++++|++|++.+...
T Consensus 9 ~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~G 61 (336)
T 3lpz_A 9 SNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASV 61 (336)
T ss_dssp -CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 344555666665554432 233344555677788999999999975543
No 279
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.85 E-value=2.3 Score=43.33 Aligned_cols=63 Identities=14% Similarity=0.039 Sum_probs=56.9
Q ss_pred HHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 561 ILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
..+++.|+.++|++.+...++.+| +......+..++.-.|+|+.|...++.+.+++|+.....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 346778999999999999999999 999999999999999999999999999999999866544
No 280
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.71 E-value=19 Score=40.14 Aligned_cols=102 Identities=12% Similarity=-0.108 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHh
Q 002100 713 EKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNL 792 (967)
Q Consensus 713 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~l 792 (967)
.....++.++...|++.+|...+.....--- .. .+...+...+...
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~----------------~~------------------~~~~~kve~~l~q 183 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETY----------------GS------------------MEMSEKIQFILEQ 183 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC----------------SS------------------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHH----------------hc------------------ccHHHHHHHHHHH
Confidence 3446789999999999999998887651100 00 0111233566777
Q ss_pred HHHHHhcccHHHHHHHHHHHhc-----cCcHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 002100 793 GSVYVDCEKLDLAADCYMNALN-----IKHTR----AHQGLARVYHLKNQRKAAYDEMTKLIEKA 848 (967)
Q Consensus 793 g~~~~~~g~~~~A~~~~~~Al~-----~~~~~----a~~~la~~~~~~g~~~~A~~~~~~al~~~ 848 (967)
..+|...+++.+|...++++.. ..++. .+...|.++...++|.+|...|..+.+..
T Consensus 184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 184 MELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 8889999999999999998743 23332 56778999999999999999999888753
No 281
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=91.66 E-value=8.6 Score=35.87 Aligned_cols=69 Identities=20% Similarity=0.160 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----------------CCchhHH-HHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNY-----------------STSEHEK-LVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~-----------------~p~~~~a-~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
....+..+.+|...++|..|+.+++..++- +|.+-+. +..+|.++.+.|+.+||+.++..+.
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 445556778888888888888888888832 2334333 4568999999999999999999999
Q ss_pred hcccchH
Q 002100 740 SIQRSFE 746 (967)
Q Consensus 740 ~~~p~~~ 746 (967)
..+|-+.
T Consensus 142 ~~~~lf~ 148 (242)
T 3kae_A 142 GKSFLFS 148 (242)
T ss_dssp HHCCCHH
T ss_pred CCccccc
Confidence 9988554
No 282
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.52 E-value=1.1 Score=45.66 Aligned_cols=60 Identities=18% Similarity=-0.001 Sum_probs=54.8
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 687 LLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 687 ~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
-+++.|+.++|+..++..++.+|.+......+..++.-.|+++.|.+.++.+.+++|+..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 356788999999999999999999999999999999999999999999999999999665
No 283
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.00 E-value=22 Score=39.54 Aligned_cols=103 Identities=9% Similarity=-0.096 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCc--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNY----STS--EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKA 752 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~----~p~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 752 (967)
.+...++.+|...|++.+|...+...... .+. -.+.+.....++...+++..|...+.++....-
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~--------- 208 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF--------- 208 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhc---------
Confidence 34567899999999999999999887532 111 245677788999999999999999988642100
Q ss_pred HHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc
Q 002100 753 YALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN 814 (967)
Q Consensus 753 ~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 814 (967)
............+...|.++...++|.+|-.+|..+..
T Consensus 209 ------------------------~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 209 ------------------------KNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp ------------------------HSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ------------------------ccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 00001112335677789999999999999999998876
No 284
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=89.89 E-value=13 Score=34.79 Aligned_cols=115 Identities=11% Similarity=0.051 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHH
Q 002100 820 AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEA 899 (967)
Q Consensus 820 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~ 899 (967)
.+..+|.+..+.|+.++|+..+.......|-...+-+..-+- +.. ...|..+... .+.--.+...+.
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN-~vp---------~~~d~~~i~~---~~~~~i~~~y~~ 182 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLEN-KVP---------QKRDKENVRQ---TGRRGIEEEYVS 182 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTT-CCC---------CCC--------------CHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhc-CCC---------cccchHHHHh---hhhccchhhhhh
Confidence 566788899999999999999988888777433222111100 000 0000001000 000000000000
Q ss_pred HHH--------HHHHHHHhcCCChH--HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002100 900 EAI--------AELSRAIAFKPDLQ--LLHLRAAFHDSMGDHLHTQRDCEAALCLDPN 947 (967)
Q Consensus 900 eAi--------~~~~kal~~~p~~~--~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~ 947 (967)
..+ ...++-.+.-|... .....|..|+.+|-.++..+.|...-..+|.
T Consensus 183 d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 183 DSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 000 23344455567754 3334677888899999999999998888885
No 285
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=89.36 E-value=13 Score=35.27 Aligned_cols=55 Identities=15% Similarity=0.047 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 677 KSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 677 ~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
++...|. +.+..|+++.|.+..+.. ++...|..+|......|+++-|..+|.++-
T Consensus 7 D~~~rF~---LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 7 DPHIRFD---LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp CHHHHHH---HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred ChHHHHH---HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3445553 345789999999987665 456789999999999999999999998865
No 286
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.09 E-value=55 Score=39.80 Aligned_cols=218 Identities=13% Similarity=-0.021 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHH-HHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCC-------CCc
Q 002100 714 KLVYEGWILYDTGHREEALAKAEESISIQ-RSFEA-FFLKAYALADSSLNPESSAYVIQLLEEALRCPSD-------GLR 784 (967)
Q Consensus 714 a~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~-~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~-------~~~ 784 (967)
+...+|.++ .|+.++++..+.+.+... .+... .-...+.++-...... ..+..+|...+..... ...
T Consensus 378 A~aSLGlIh--~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~i 453 (963)
T 4ady_A 378 ATASLGVIH--KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVL 453 (963)
T ss_dssp HHHHHHHHT--SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHH
T ss_pred HHHHhhhhc--cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHH
Confidence 344455544 477778888887766421 11111 1122223332222211 2355655555543320 111
Q ss_pred hHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHH--HHHHH
Q 002100 785 KGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT----RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNAS--AYEKR 858 (967)
Q Consensus 785 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~----~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~ 858 (967)
...+-..||.+|.-.++ +++.+.+...+..+.. .+-+.+|.++.-.|+.+.....++.+.+...+... +-..+
T Consensus 454 r~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgL 532 (963)
T 4ady_A 454 LHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGL 532 (963)
T ss_dssp HHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 12245577777776665 4566666666653332 25566777777778876666666655543222111 11222
Q ss_pred H--ccCChHHHHHHHHHhhccCCCCchHHH----HHHHHHHhCCCHHHHHH-HHHHHHhcCCChHH--HHHHHHHHHHcC
Q 002100 859 S--EYCDRDMAKSDLSMATQLDPMRTYPYR----YRAAVLMDDHKEAEAIA-ELSRAIAFKPDLQL--LHLRAAFHDSMG 929 (967)
Q Consensus 859 ~--~~~~~~~A~~~l~~al~l~p~~~~~~~----~la~~~~~~g~~~eAi~-~~~kal~~~p~~~~--~~~~a~~~~~~g 929 (967)
| .+|+.+.+....+..... .++...+ .+|..|...|+. .|++ .+..+. .+++..+ .-.+|......|
T Consensus 533 Gll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~-~aIq~LL~~~~-~d~~d~VRraAViaLGlI~~g 608 (963)
T 4ady_A 533 ALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNN-SAVKRLLHVAV-SDSNDDVRRAAVIALGFVLLR 608 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCH-HHHHHHHHHHH-HCSCHHHHHHHHHHHHHHTSS
T ss_pred HhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHhc-cCCcHHHHHHHHHHHHhhccC
Confidence 3 236666555555544432 2222222 345566677885 5555 444444 3444321 122333344456
Q ss_pred ChHHHHHHHHH
Q 002100 930 DHLHTQRDCEA 940 (967)
Q Consensus 930 ~~~~A~~~~~~ 940 (967)
+.+.+.+.++.
T Consensus 609 ~~e~v~rlv~~ 619 (963)
T 4ady_A 609 DYTTVPRIVQL 619 (963)
T ss_dssp SCSSHHHHTTT
T ss_pred CHHHHHHHHHH
Confidence 65544444443
No 287
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.97 E-value=6.1 Score=43.35 Aligned_cols=59 Identities=8% Similarity=-0.056 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 681 RFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 681 ~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
...++..+...|++.+|+..++.++..+|-+-..+..+-.+++..|+..+|++.|++.-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34567778899999999999999999999999999999999999999999999998764
No 288
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.13 E-value=7.7 Score=42.49 Aligned_cols=59 Identities=14% Similarity=-0.020 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
...++..+...|++.+|+..+.+++..+| +..++..+-.++...|+..+|++.|+++-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567788889999999999999999999 888899999999999999999998877643
No 289
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.83 E-value=7.5 Score=49.33 Aligned_cols=140 Identities=14% Similarity=0.012 Sum_probs=89.2
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCchHHhhhhhhhhhHh
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLD-PSYMMFYGQLHGDNLVE 633 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~ 633 (967)
...+...+...+.++-|.+. +...| ++..-+.+|.+++..|++++|...|+++-.-- .+.....
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~---------- 880 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA---------- 880 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCS----------
T ss_pred HHHHHHHHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhh----------
Confidence 34455667777777766543 23344 56666899999999999999999998864321 1110000
Q ss_pred hhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHh---cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 002100 634 TLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLA---NDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS 710 (967)
Q Consensus 634 ~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~---~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~ 710 (967)
. +........ .....+..|+....++.+.+.++.+++..+.|++..+.
T Consensus 881 ~-----------------------------~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~ 931 (1139)
T 4fhn_B 881 V-----------------------------LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKET 931 (1139)
T ss_dssp S-----------------------------HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCS
T ss_pred h-----------------------------hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccC
Confidence 0 111111111 12233456677777888889999999999888876543
Q ss_pred hh-----HHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 711 EH-----EKLVYEGWILYDTGHREEALAKAEES 738 (967)
Q Consensus 711 ~~-----~a~~~lg~~~~~~g~~~eA~~~~~~a 738 (967)
+. ..|.++=..+...|+|++|...+...
T Consensus 932 ~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 932 DDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 32 24566667788889999998777544
No 290
>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL capsid, single-stranded DNA, icosahedral virus; HET: DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB: 1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A 1c8e_A 1c8f_A 1c8g_A
Probab=85.48 E-value=0.21 Score=53.99 Aligned_cols=7 Identities=14% Similarity=0.463 Sum_probs=2.9
Q ss_pred hhHhhhh
Q 002100 183 AAWLRFE 189 (967)
Q Consensus 183 ~~w~~~~ 189 (967)
++|-+..
T Consensus 124 ~DWQ~Li 130 (584)
T 4dpv_Z 124 GDWQLIV 130 (584)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 291
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.13 E-value=2.6 Score=46.99 Aligned_cols=93 Identities=8% Similarity=-0.011 Sum_probs=70.7
Q ss_pred CCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC----ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCchHHhh
Q 002100 551 TLSYPYKYRAILLVEENKLAAAITEINRIIGFKV----SPDCLELRAWISIALEDYDGALRDVRALLTL--DPSYMMFYG 624 (967)
Q Consensus 551 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~ 624 (967)
.-..++..+|..|.+.|++++|.+.|.++..... ..+.+....++++..+|+..+...+.++-.. ...++....
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 3456889999999999999999999999887544 3678889999999999999999999998765 222233332
Q ss_pred hhhhhhhHhhhHHHhhchhhH
Q 002100 625 QLHGDNLVETLQPLVQQWSQA 645 (967)
Q Consensus 625 ~~~~~~~~~~l~~~~~~~~~A 645 (967)
++. ...|+++...++|..|
T Consensus 209 ~lk--~~~gl~~l~~r~f~~A 227 (429)
T 4b4t_R 209 RYK--TYYGIHCLAVRNFKEA 227 (429)
T ss_dssp HHH--HHHHHGGGGTSCHHHH
T ss_pred HHH--HHHHHHHHHhChHHHH
Confidence 221 3446666677778777
No 292
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.92 E-value=1.8 Score=48.75 Aligned_cols=141 Identities=14% Similarity=0.110 Sum_probs=65.1
Q ss_pred HHHHhcCHHHHHHHHHHHHh-----------cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHh
Q 002100 687 LLLRLNSQKAAMRSLRLARN-----------YSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYAL 755 (967)
Q Consensus 687 ~~~~~g~~~~A~~~l~~al~-----------~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~l 755 (967)
.++..+++++|..+-...+. +++=.+..|++++.++...|+..+..........+.|. ++.++..
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~----Ll~~~rt 220 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRST----MMKFLKI 220 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTH----HHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHH----HHHHHHH
Confidence 34567888888876654441 13334567888888888888777665555555544441 1222222
Q ss_pred hhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc---H----HHHHHHHHHH
Q 002100 756 ADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH---T----RAHQGLARVY 828 (967)
Q Consensus 756 a~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~---~----~a~~~la~~~ 828 (967)
+-... +....+..++.+-..|...+.|++|.....++.-+.+ . ..++.+|+++
T Consensus 221 a~lr~--------------------D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~ 280 (523)
T 4b4t_S 221 ASLKH--------------------DNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKIN 280 (523)
T ss_dssp CCSCS--------------------SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHH
T ss_pred Hhccc--------------------CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHH
Confidence 22211 2223445677788899999999999999999976432 1 2677799999
Q ss_pred HHhCCHHHHHHHHHHHHHHccCC
Q 002100 829 HLKNQRKAAYDEMTKLIEKARNN 851 (967)
Q Consensus 829 ~~~g~~~~A~~~~~~al~~~p~~ 851 (967)
..+++|.+|.+.+..|+...|.+
T Consensus 281 a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 281 AIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHhccHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999988753
No 293
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=83.63 E-value=4 Score=46.16 Aligned_cols=67 Identities=13% Similarity=0.019 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 680 LRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 680 ~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
....+|.+......+..|...|.+|....|++...+..+|.+....|+.-+|+-+|.+++....-++
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~ 220 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP 220 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCCh
Confidence 3445677777777788888888888888888888888888888888888888888888876554343
No 294
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=81.40 E-value=15 Score=34.87 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=29.3
Q ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHH
Q 002100 787 QALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKA 836 (967)
Q Consensus 787 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~ 836 (967)
..|..+|......|+++-|+.+|.++-..+ .+..+|.-.|+.+.
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~------~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQTQHSFD------KLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCHH------HHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhCCHH------HHHHHHHHhCCHHH
Confidence 578888888888888888888887765432 23334444555443
No 295
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=80.60 E-value=6.2 Score=44.64 Aligned_cols=66 Identities=23% Similarity=0.128 Sum_probs=51.1
Q ss_pred CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CChHHHHHHHHHHHH
Q 002100 862 CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFK-PDLQLLHLRAAFHDS 927 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~-p~~~~~~~~a~~~~~ 927 (967)
.....|...|.+|..+.|++..++..+|.+....|+.-+|+-+|-+++... |-+.+..++..++.+
T Consensus 166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 567888888888888888888888888888888888888888888888654 334566666665543
No 296
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.27 E-value=2.8 Score=46.75 Aligned_cols=61 Identities=7% Similarity=-0.019 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---chhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYST---SEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p---~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
..+..+|..|.+.|++++|.+.|.++..... +-.+.+.....++...+++..+...+.++.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3556677777777777777777777665432 234555666666666777777777666664
No 297
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=75.83 E-value=16 Score=46.43 Aligned_cols=138 Identities=9% Similarity=-0.061 Sum_probs=89.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCC
Q 002100 684 QSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPE 763 (967)
Q Consensus 684 ~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~ 763 (967)
+...+...+.++.|... ....|.++...+.+|.++...|++++|..+|+++..--. .......
T Consensus 818 l~~~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~-------------~~~~l~~ 880 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLY-------------SHTSQFA 880 (1139)
T ss_dssp HHHHHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCT-------------TCCCSCS
T ss_pred HHHHHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhc-------------ccchhhh
Confidence 44456667777666553 344566666778999999999999999999998742111 0000001
Q ss_pred chHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc---cCcH----HHHHHHHHHHHHhCCHHH
Q 002100 764 SSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN---IKHT----RAHQGLARVYHLKNQRKA 836 (967)
Q Consensus 764 ~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~---~~~~----~a~~~la~~~~~~g~~~~ 836 (967)
.... +................|..+..++.+.+.++.+++.-+.|++ .+.. ..|.++=..+...++|++
T Consensus 881 ~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 881 VLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred hhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 1111 1112222222233445677788888999999999999999987 2222 256677778889999999
Q ss_pred HHHHHH
Q 002100 837 AYDEMT 842 (967)
Q Consensus 837 A~~~~~ 842 (967)
|+..+.
T Consensus 957 Ay~aL~ 962 (1139)
T 4fhn_B 957 AHVALM 962 (1139)
T ss_dssp GGHHHH
T ss_pred HHHHHH
Confidence 988775
No 298
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=75.25 E-value=2.4 Score=36.78 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=30.0
Q ss_pred CCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhh
Q 002100 356 VSDIEDAVMLIEYGLEEAAYLLVAACLQVLLREL 389 (967)
Q Consensus 356 ~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~ 389 (967)
++ .+|+..++..|+.++++.|++.|.+|+.+++
T Consensus 77 ~~-~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 77 LE-ADTVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 44 7899999999999999999999999998764
No 299
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=75.01 E-value=6 Score=31.46 Aligned_cols=39 Identities=10% Similarity=0.019 Sum_probs=32.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 002100 920 LRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKA 958 (967)
Q Consensus 920 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~ 958 (967)
.+|..+...|++++|...|-+|+...|+..+++..|++.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~t 60 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQT 60 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 478888888888888888888888888888888888764
No 300
>3n44_F E1 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG; 2.35A {Chikungunya virus} PDB: 3n41_F* 3n42_F* 3n43_F* 2xfc_A
Probab=71.28 E-value=0.83 Score=47.49 Aligned_cols=6 Identities=50% Similarity=1.530 Sum_probs=2.2
Q ss_pred HHHHhh
Q 002100 150 CAIFRG 155 (967)
Q Consensus 150 ~~~~~~ 155 (967)
|.||-|
T Consensus 100 CkVftG 105 (473)
T 3n44_F 100 CKVFTG 105 (473)
T ss_dssp EEEEES
T ss_pred ceEecc
Confidence 333333
No 301
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.01 E-value=3.2 Score=35.93 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCC
Q 002100 323 SFDPRLVLELLSFANRFCCEELKSACDSYLASMVS 357 (967)
Q Consensus 323 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~ 357 (967)
.+++++...++.+|+.|+++.|++.|.+++.....
T Consensus 7 ~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~ 41 (105)
T 2eqx_A 7 GVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLA 41 (105)
T ss_dssp CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999987754
No 302
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.61 E-value=11 Score=42.27 Aligned_cols=137 Identities=9% Similarity=0.003 Sum_probs=56.0
Q ss_pred HHHhcccHHHHHHHHHHHhc---cC---c-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc
Q 002100 795 VYVDCEKLDLAADCYMNALN---IK---H-------TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY 861 (967)
Q Consensus 795 ~~~~~g~~~~A~~~~~~Al~---~~---~-------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 861 (967)
.+...+++++|.++-...+. +. . ...|+..++++...|+...........+++-|.
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~----------- 213 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRST----------- 213 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTH-----------
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHH-----------
Confidence 35677889998888776652 11 1 125666666666666655544433333332221
Q ss_pred CChHHHHHHHHHhh-ccCCCC-chHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-----hH---HHHHHHHHHHHcCCh
Q 002100 862 CDRDMAKSDLSMAT-QLDPMR-TYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-----LQ---LLHLRAAFHDSMGDH 931 (967)
Q Consensus 862 ~~~~~A~~~l~~al-~l~p~~-~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-----~~---~~~~~a~~~~~~g~~ 931 (967)
-+..++.|. ..|+.. +..+..+-..|...+.|++|.....++. .|. .+ .++..|.++..+++|
T Consensus 214 -----Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y 286 (523)
T 4b4t_S 214 -----MMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDY 286 (523)
T ss_dssp -----HHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred -----HHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccH
Confidence 111222222 223321 2344456667888888888988888884 332 12 566678889999999
Q ss_pred HHHHHHHHHHHhcCCCch
Q 002100 932 LHTQRDCEAALCLDPNHT 949 (967)
Q Consensus 932 ~~A~~~~~~al~~~P~~~ 949 (967)
.+|.+.+..|+...|.+.
T Consensus 287 ~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 287 STANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHhCCcch
Confidence 999999999988887654
No 303
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=66.97 E-value=35 Score=41.86 Aligned_cols=58 Identities=9% Similarity=-0.219 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHh-----cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 681 RFRQSLLLLRLNSQKAAMRSLRLARN-----YSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 681 ~~~~g~~~~~~g~~~~A~~~l~~al~-----~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
+..+-..|.+.|+.++|...|....+ ..| +...|..+-..|.+.|+.++|.+.|++..
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~ 192 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVK 192 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44455555666666666666644322 123 24455556666666666666666666554
No 304
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=65.16 E-value=1.4e+02 Score=31.22 Aligned_cols=46 Identities=9% Similarity=0.215 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhc--hHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 002100 439 TVMLLERLVESATES--WQKQLAFHQLGVVMLEREEYKDAQNWFKAAV 484 (967)
Q Consensus 439 ~~~ll~~l~~~~~~~--~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al 484 (967)
..+.+.++.+..... .+....+.-+..-|.++++|++|++.+....
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga 60 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGA 60 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 445555555554432 3444455667777888999999999865443
No 305
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=64.66 E-value=58 Score=39.93 Aligned_cols=101 Identities=12% Similarity=0.010 Sum_probs=72.7
Q ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHhc-----cC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc
Q 002100 787 QALNNLGSVYVDCEKLDLAADCYMNALN-----IK-HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE 860 (967)
Q Consensus 787 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~-----~~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 860 (967)
..|+.+-..|.+.|+.++|...|....+ .. ....|..|-..+.+.|+.++|.+.|++..+..
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G------------ 195 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG------------ 195 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------------
Confidence 4677788888889999999998866432 22 23377778888888888888888888776532
Q ss_pred cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCChH
Q 002100 861 YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHK-EAEAIAELSRAIAFKPDLQ 916 (967)
Q Consensus 861 ~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~-~~eAi~~~~kal~~~p~~~ 916 (967)
+.| +...|..+-..+.+.|+ .++|.+.|++..+..-.++
T Consensus 196 ----------------~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD 235 (1134)
T 3spa_A 196 ----------------LTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235 (1134)
T ss_dssp ----------------CCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSH
T ss_pred ----------------CCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCC
Confidence 233 35566666667888887 4788889988887654443
No 306
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=63.18 E-value=4.7 Score=46.01 Aligned_cols=85 Identities=8% Similarity=-0.015 Sum_probs=58.0
Q ss_pred cEEEEEcCeEEEehhHHHhccCHH-HHHhhcC-CCCCCccceEEeccCCCCHHHHHHHHHhHcC-CCCCCCCHH-HHHHH
Q 002100 257 DMSFCIGNDEIRCVRYKIASLSRP-FRTMLYG-GFIESRREKVNFSQNGISVEAMRAAEEFSRT-KMLDSFDPR-LVLEL 332 (967)
Q Consensus 257 Dv~~~v~~~~~~~hr~vLa~~S~~-F~~~~~~-~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt-~~~~~~~~~-~~~~l 332 (967)
=|+|-|||..|...+..|...-.- +-.|+.. .+-....+++-|. =+|..|+.+|.|+.| |++ ..+++ .+..+
T Consensus 53 ~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~D---R~~~~F~~IL~~~r~~g~l-~~p~~~~~~~~ 128 (514)
T 2r9r_B 53 RVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFD---RNRPSFDAILYYYQSGGRL-RRPVNVPLDIF 128 (514)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEEC---SCHHHHHHHHHHHHHTSCC-CCCTTSCHHHH
T ss_pred EEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEEc---CChHHHHHHHHHHhcCCcc-ccCCcccHHHH
Confidence 377889999999999999643211 1111111 1112345577774 599999999999999 998 44433 35567
Q ss_pred HHHhchhChHHHH
Q 002100 333 LSFANRFCCEELK 345 (967)
Q Consensus 333 l~~A~~~~~~~l~ 345 (967)
+.=|++|+++.+.
T Consensus 129 ~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 129 SEEIRFYELGEEA 141 (514)
T ss_dssp HHHHHHTTCCHHH
T ss_pred HHHHHhcCCCHHH
Confidence 8889999997653
No 307
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=60.52 E-value=9.7 Score=31.94 Aligned_cols=37 Identities=11% Similarity=0.029 Sum_probs=25.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 002100 921 RAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDK 957 (967)
Q Consensus 921 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r 957 (967)
+|..+...|+++.|+.+|-+|+...|+..+++..|++
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~q~ 62 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ 62 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5666666777777777777777777776666666655
No 308
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=59.03 E-value=3.7 Score=37.49 Aligned_cols=35 Identities=11% Similarity=0.007 Sum_probs=31.6
Q ss_pred CCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhh
Q 002100 356 VSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPC 391 (967)
Q Consensus 356 ~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~ 391 (967)
++ .+|+..++..|..++++.|++.|.+|+.+++..
T Consensus 101 i~-~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~ 135 (138)
T 2z8h_A 101 LS-KDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLD 135 (138)
T ss_dssp CC-TTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSC
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 44 789999999999999999999999999988753
No 309
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=59.00 E-value=4 Score=37.08 Aligned_cols=35 Identities=9% Similarity=-0.058 Sum_probs=28.1
Q ss_pred CCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhh
Q 002100 356 VSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPC 391 (967)
Q Consensus 356 ~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~ 391 (967)
++ .+|+..++..|+.++++.|++.|.+|+.+++..
T Consensus 87 i~-~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~ 121 (135)
T 2yy9_A 87 LT-SGNRDQVLLAAKELRVPEAVELCQSFQPQTSVG 121 (135)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHCCC-----
T ss_pred CC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccC
Confidence 44 789999999999999999999999999988873
No 310
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=58.93 E-value=7.5 Score=34.68 Aligned_cols=30 Identities=7% Similarity=0.115 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHhChHHHHHHHHHHHhhh
Q 002100 359 IEDAVMLIEYGLEEAAYLLVAACLQVLLRE 388 (967)
Q Consensus 359 ~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~ 388 (967)
.+|+..++..|..++++.|++.|.+|+.++
T Consensus 97 ~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 97 EGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp TTTHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 689999999999999999999999999764
No 311
>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein synthesis, native chemical ligation; 0.98A {Synthetic} PDB: 3boi_A 3bog_A* 3bog_C*
Probab=55.86 E-value=31 Score=25.63 Aligned_cols=12 Identities=42% Similarity=0.495 Sum_probs=4.8
Q ss_pred CCCCCcccccCC
Q 002100 21 GCKGTQVFAINP 32 (967)
Q Consensus 21 ~~~~~~~~~~~~ 32 (967)
+|-.+--.+.+.
T Consensus 12 gcpgtagaagsv 23 (81)
T 2pne_A 12 GCPGTAGAAGSV 23 (81)
T ss_dssp BSSCCCCCCCCC
T ss_pred CCCccccccccc
Confidence 454443333333
No 312
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=55.14 E-value=8.9 Score=33.55 Aligned_cols=28 Identities=7% Similarity=-0.128 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHHHhChHHHHHHHHHHHh
Q 002100 359 IEDAVMLIEYGLEEAAYLLVAACLQVLL 386 (967)
Q Consensus 359 ~~n~~~~~~~A~~~~~~~L~~~c~~~i~ 386 (967)
.+|+..++..|..++++.|++.|.+|+.
T Consensus 88 ~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 88 SWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp TTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 6899999999999999999999999985
No 313
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=53.76 E-value=23 Score=33.04 Aligned_cols=78 Identities=8% Similarity=0.061 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHhchhCh---------------HHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhh
Q 002100 323 SFDPRLVLELLSFANRFCC---------------EELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLR 387 (967)
Q Consensus 323 ~~~~~~~~~ll~~A~~~~~---------------~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~ 387 (967)
.++...+..++..+....- ..+..-..+|+ .++ .+++..++..|...+.+.|.+.|.+|+..
T Consensus 48 ~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~--~id-~~~l~eLl~AAnyL~I~~Lld~~c~~va~ 124 (159)
T 2ast_A 48 NVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFL--KVD-QGTLFELILAANYLDIKGLLDVTCKTVAN 124 (159)
T ss_dssp TSCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHT--CSC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHH--cCC-HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5677777777777765441 11223333445 377 89999999999999999999999999988
Q ss_pred hhhhcCCchhHhhhhcc
Q 002100 388 ELPCSMQNPNVMRIFCS 404 (967)
Q Consensus 388 ~~~~~l~~~~~~~ll~s 404 (967)
.+.. .+.+++.++|.-
T Consensus 125 ~i~g-kt~eeir~~f~I 140 (159)
T 2ast_A 125 MIKG-KTPEEIRKTFNI 140 (159)
T ss_dssp HHSS-CCHHHHHHHTTC
T ss_pred HHcC-CCHHHHHHHcCC
Confidence 7764 455667777664
No 314
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=53.20 E-value=44 Score=30.37 Aligned_cols=94 Identities=7% Similarity=0.036 Sum_probs=63.7
Q ss_pred HHHHHHHHhHcCCCCC--CCCHHHHHHHHHHhchhCh---------------HHHHHHHHHHHHhhCCChhhHHHHHHHH
Q 002100 307 EAMRAAEEFSRTKMLD--SFDPRLVLELLSFANRFCC---------------EELKSACDSYLASMVSDIEDAVMLIEYG 369 (967)
Q Consensus 307 ~~~~~~l~~~Yt~~~~--~~~~~~~~~ll~~A~~~~~---------------~~l~~~c~~~l~~~~~~~~n~~~~~~~A 369 (967)
..++.+++-.-.+.++ .++...+..++..+.+..- ..+.+--.+|+ .++ .+++..++..|
T Consensus 25 ~~ik~ml~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~--~vd-~~~l~eLi~AA 101 (141)
T 1fs1_B 25 VTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFL--KVD-QGTLFELILAA 101 (141)
T ss_dssp HHHHHHHHHTCCSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHT--CSC-HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHH--hCC-HHHHHHHHHHH
Confidence 4567777643122332 6788888888888866551 12222233444 377 89999999999
Q ss_pred HHhChHHHHHHHHHHHhhhhhhcCCchhHhhhhcc
Q 002100 370 LEEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCS 404 (967)
Q Consensus 370 ~~~~~~~L~~~c~~~i~~~~~~~l~~~~~~~ll~s 404 (967)
...+.+.|.+.|.+++...+.. .+.+++.++|.-
T Consensus 102 nyL~I~~Lldl~c~~vA~~ikg-kt~eeiR~~f~I 135 (141)
T 1fs1_B 102 NYLDIKGLLDVTCKTVANMIKG-KTPEEIRKTFNI 135 (141)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTT-CCHHHHHHHTC-
T ss_pred HHHhhhHHHHHHHHHHHHHHcC-CCHHHHHHHcCC
Confidence 9999999999999999888765 555666666653
No 315
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=52.86 E-value=2.3e+02 Score=29.85 Aligned_cols=39 Identities=10% Similarity=0.173 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhccCC--ChhHHHHHHHHHHHhcCHHHHHHHH
Q 002100 570 AAAITEINRIIGFKV--SPDCLELRAWISIALEDYDGALRDV 609 (967)
Q Consensus 570 ~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~ 609 (967)
.+|+..-.+ ....| +++.+..+|..|.+.+++.+|..+|
T Consensus 119 ~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 119 KEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 345554444 33445 8999999999999999999999887
No 316
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=52.79 E-value=14 Score=32.64 Aligned_cols=30 Identities=23% Similarity=0.111 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHhChHHHHHHHHHHHhhh
Q 002100 359 IEDAVMLIEYGLEEAAYLLVAACLQVLLRE 388 (967)
Q Consensus 359 ~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~ 388 (967)
.+|+..++..|+.++++.|++.|.+|+.+.
T Consensus 91 ~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 120 (121)
T 1buo_A 91 AEDLDDLLYAAEILEIEYLEEQCLKMLETI 120 (121)
T ss_dssp GGGHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 789999999999999999999999998753
No 317
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=52.71 E-value=11 Score=33.18 Aligned_cols=28 Identities=11% Similarity=0.035 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHhChHHHHHHHHHHHh
Q 002100 359 IEDAVMLIEYGLEEAAYLLVAACLQVLL 386 (967)
Q Consensus 359 ~~n~~~~~~~A~~~~~~~L~~~c~~~i~ 386 (967)
.+|+..++..|+.++++.|++.|.+|+.
T Consensus 90 ~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 90 PENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp TTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 6899999999999999999999999985
No 318
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=52.46 E-value=6.6 Score=34.68 Aligned_cols=30 Identities=10% Similarity=-0.033 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHhChHHHHHHHHHHHhhh
Q 002100 359 IEDAVMLIEYGLEEAAYLLVAACLQVLLRE 388 (967)
Q Consensus 359 ~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~ 388 (967)
.+|+..++..|+.++++.|++.|.+|+.++
T Consensus 88 ~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 88 SGNRDQVLLAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp TTTHHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence 689999999999999999999999998765
No 319
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=50.97 E-value=71 Score=28.84 Aligned_cols=61 Identities=16% Similarity=-0.045 Sum_probs=49.0
Q ss_pred HHHHHH-HHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 002100 556 YKYRAI-LLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLD 616 (967)
Q Consensus 556 ~~~la~-~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 616 (967)
|..+|. .+..+|+-++--+.+...+...+ +++.+..+|..|.+.|+..+|.+.+.+|-+..
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 444444 56778888888888888777666 99999999999999999999999999987653
No 320
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=48.29 E-value=16 Score=32.03 Aligned_cols=27 Identities=7% Similarity=0.048 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHHhChHHHHHHHHHHH
Q 002100 359 IEDAVMLIEYGLEEAAYLLVAACLQVL 385 (967)
Q Consensus 359 ~~n~~~~~~~A~~~~~~~L~~~c~~~i 385 (967)
.+|+..++..|..++++.|++.|.+|+
T Consensus 93 ~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 93 TANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp GGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 789999999999999999999999987
No 321
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=47.41 E-value=2.6e+02 Score=29.03 Aligned_cols=18 Identities=11% Similarity=0.045 Sum_probs=11.9
Q ss_pred HHHhcccHHHHHHHHHHH
Q 002100 795 VYVDCEKLDLAADCYMNA 812 (967)
Q Consensus 795 ~~~~~g~~~~A~~~~~~A 812 (967)
.|...++...|...|...
T Consensus 197 ~yL~l~n~~~A~~~~~~f 214 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIF 214 (312)
T ss_dssp HHHHTTBHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHH
Confidence 455677777777776544
No 322
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=45.85 E-value=12 Score=35.22 Aligned_cols=35 Identities=14% Similarity=0.272 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCC
Q 002100 323 SFDPRLVLELLSFANRFCCEELKSACDSYLASMVS 357 (967)
Q Consensus 323 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~ 357 (967)
.++.+++.+++.+|++|+++.|++.|.+++..+..
T Consensus 131 ~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~ 165 (172)
T 3htm_A 131 NLSVENAAEILILADLHSADQLKTQAVDFINYHAT 165 (172)
T ss_dssp TCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred hCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 35778999999999999999999999999998865
No 323
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=45.53 E-value=0.014 Score=64.29 Aligned_cols=263 Identities=14% Similarity=0.019 Sum_probs=146.8
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchH
Q 002100 585 SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSL 664 (967)
Q Consensus 585 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al 664 (967)
.++.|..+|..++..+...+|++.|-++ .+|.+.... -.+....++|+. +
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eV---------i~~A~~~~~~ed-------------------L 102 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEV---------VQAANTSGNWEE-------------------L 102 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHH---------HHHTTTSSCCTT-------------------H
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHH---------HHHHHhCCCHHH-------------------H
Confidence 4677888888888888888888777443 233322111 122223333333 2
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccc
Q 002100 665 AVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRS 744 (967)
Q Consensus 665 ~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 744 (967)
--|-++.+..-..+.+-..+..+|.+.++..+-...+ ..|+.+ -....|.=++..|.|+.|.-.|...-
T Consensus 103 v~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl-----~~~N~A-~iq~VGDrcf~e~lYeAAKilys~is----- 171 (624)
T 3lvg_A 103 VKYLQMARKKARESYVETELIFALAKTNRLAELEEFI-----NGPNNA-HIQQVGDRCYDEKMYDAAKLLYNNVS----- 171 (624)
T ss_dssp HHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTT-----SCCSSS-CTHHHHHHHHHSCCSTTSSTTGGGSC-----
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHH-----cCCCcc-cHHHHHHHHHHccCHHHHHHHHHhCc-----
Confidence 2333333333444445555566666666544322211 123322 24457888888888887766554321
Q ss_pred hHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHH
Q 002100 745 FEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGL 824 (967)
Q Consensus 745 ~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~l 824 (967)
-|..|+.++..+|+|..|+++-++|- .+..|-..
T Consensus 172 -------------------------------------------N~akLAstLV~L~~yq~AVdaArKAn---s~ktWKeV 205 (624)
T 3lvg_A 172 -------------------------------------------NFGRLASTLVHLGEYQAAVDGARKAN---STRTWKEV 205 (624)
T ss_dssp -------------------------------------------CCTTTSSSSSSCSGGGSSTTTTTTCC---SSCSHHHH
T ss_pred -------------------------------------------cHHHHHHHHHHHHHHHHHHHHHHhcC---ChhHHHHH
Confidence 23456778888888888887766554 33445555
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHH
Q 002100 825 ARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAE 904 (967)
Q Consensus 825 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~ 904 (967)
..+....+++.-|.-.--.+|-......+.....-..|-+++-+..++.++.+...+...+..+|.+|.+= +.++=++.
T Consensus 206 ~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEH 284 (624)
T 3lvg_A 206 CFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREH 284 (624)
T ss_dssp THHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHH
T ss_pred HHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHH
Confidence 56666666666554443333322111111111111127788888889999888888888888888777653 55555555
Q ss_pred HHHHHhc--CCC-------hHHHHHHHHHHHHcCChHHHH
Q 002100 905 LSRAIAF--KPD-------LQLLHLRAAFHDSMGDHLHTQ 935 (967)
Q Consensus 905 ~~kal~~--~p~-------~~~~~~~a~~~~~~g~~~~A~ 935 (967)
++--... -|+ ...|..+-.+|.+-.+|+.|.
T Consensus 285 lklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 285 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 4432211 122 124556667777777887664
No 324
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=42.66 E-value=2.8e+02 Score=27.92 Aligned_cols=59 Identities=12% Similarity=0.198 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC--ChhHHHHHHHHHHH-hcCHHHHHHHHHHH
Q 002100 554 YPYKYRAILLVEENKLAAAITEINRIIGFKV--SPDCLELRAWISIA-LEDYDGALRDVRAL 612 (967)
Q Consensus 554 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~-~g~~~~A~~~~~~a 612 (967)
.-+.++|.+..+.++|++.++..+++++.++ +.+-..++...|-+ .|....+.+.+...
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissi 93 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSI 93 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHH
Confidence 4567788999999999999999999999888 67777777777754 35555555555443
No 325
>3nwm_A Peptide/beta-2microglobulin/MHC class I H-2KD CHI protein; peptide-MHC complex, immunoglobulin fold system; 2.70A {Synthetic}
Probab=38.19 E-value=8.4 Score=42.85 Aligned_cols=6 Identities=17% Similarity=0.578 Sum_probs=2.5
Q ss_pred eEEEeh
Q 002100 265 DEIRCV 270 (967)
Q Consensus 265 ~~~~~h 270 (967)
..+.||
T Consensus 400 ~~ytC~ 405 (443)
T 3nwm_A 400 QNYTCH 405 (443)
T ss_dssp TSEEEE
T ss_pred CEEEEE
Confidence 344443
No 326
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=37.39 E-value=2.3e+02 Score=25.57 Aligned_cols=57 Identities=14% Similarity=-0.017 Sum_probs=45.2
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 002100 686 LLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQ 742 (967)
Q Consensus 686 ~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 742 (967)
..+..+|+-++-.+.+...+...+-.++.++.+|.+|.+.|+..+|.+.+.+|-+..
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 345667888887777777667777779999999999999999999999999887543
No 327
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=36.86 E-value=3.2e+02 Score=27.02 Aligned_cols=60 Identities=10% Similarity=-0.028 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC--ChhHHHHHHHHHHH-hcCHHHHHHHHHHHH
Q 002100 554 YPYKYRAILLVEENKLAAAITEINRIIGFKV--SPDCLELRAWISIA-LEDYDGALRDVRALL 613 (967)
Q Consensus 554 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~-~g~~~~A~~~~~~al 613 (967)
.-+.++|.+..+.++|++.++...++++.++ +.+-..++...|-+ .|....+.+.+....
T Consensus 9 e~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissie 71 (236)
T 3iqu_A 9 ASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIE 71 (236)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 3467788999999999999999999999888 77777777777754 355556666554443
No 328
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=36.63 E-value=46 Score=27.16 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEA 486 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~ 486 (967)
+++..+...|.-.-..|+|++|+.+|..+++.
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555666777778889999999999988874
No 329
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=36.23 E-value=23 Score=31.18 Aligned_cols=51 Identities=18% Similarity=0.119 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhh
Q 002100 323 SFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLR 387 (967)
Q Consensus 323 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~ 387 (967)
.++++.+..++.+.--=.+ .++ .+|+..++..|+.++++.|++.|.+++..
T Consensus 67 ~v~~~~f~~ll~fiYtg~~-------------~i~-~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 67 GISPSTFAQLLNFVYGESV-------------ELQ-PGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp SCCHHHHHHHHHHHTTCCE-------------EEC-GGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHcCCCc-------------CcC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 5677777766665432122 245 78999999999999999999999988653
No 330
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=36.16 E-value=15 Score=33.63 Aligned_cols=27 Identities=11% Similarity=-0.007 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHHhChHHHHHHHHHHH
Q 002100 359 IEDAVMLIEYGLEEAAYLLVAACLQVL 385 (967)
Q Consensus 359 ~~n~~~~~~~A~~~~~~~L~~~c~~~i 385 (967)
.+|+..++..|..++++.|++.|.+|+
T Consensus 117 ~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 117 EDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp TTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 789999999999999999999998875
No 331
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=35.94 E-value=3.4e+02 Score=27.05 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHhccCC--ChhHHHHHHHHHHH-hcCHHHHHHHHHHHH
Q 002100 555 PYKYRAILLVEENKLAAAITEINRIIGFKV--SPDCLELRAWISIA-LEDYDGALRDVRALL 613 (967)
Q Consensus 555 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~-~g~~~~A~~~~~~al 613 (967)
-+.++|.+..+.++|++.++..+++++.++ +.+-..++...|-+ .|....+.+.+..+.
T Consensus 6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissie 67 (248)
T 3uzd_A 6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIE 67 (248)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 456788999999999999999999999888 67777777777754 355555655554443
No 332
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=35.37 E-value=16 Score=33.20 Aligned_cols=32 Identities=22% Similarity=0.063 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHhChHHHHHHHHHHHhhhhh
Q 002100 359 IEDAVMLIEYGLEEAAYLLVAACLQVLLRELP 390 (967)
Q Consensus 359 ~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~ 390 (967)
.+++..++..|+.++++.|++.|.+|+.+++.
T Consensus 93 ~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~ 124 (145)
T 4eoz_A 93 DKMADDLLAAADKYALERLKVMCEDALCSNLS 124 (145)
T ss_dssp GGTHHHHHHHHHHTTCHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC
Confidence 68999999999999999999999999987664
No 333
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=34.55 E-value=21 Score=37.45 Aligned_cols=35 Identities=14% Similarity=0.272 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCC
Q 002100 323 SFDPRLVLELLSFANRFCCEELKSACDSYLASMVS 357 (967)
Q Consensus 323 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~ 357 (967)
.++.+++..++.+|++|+++.|++.|.+++...+.
T Consensus 271 ~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~ 305 (312)
T 3hqi_A 271 NLSVENAAEILILADLHSADQLKTQAVDFINYHAT 305 (312)
T ss_dssp TCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 35677999999999999999999999999998765
No 334
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=33.81 E-value=69 Score=25.35 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=27.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCChH
Q 002100 887 YRAAVLMDDHKEAEAIAELSRAIAFKPDLQ 916 (967)
Q Consensus 887 ~la~~~~~~g~~~eAi~~~~kal~~~p~~~ 916 (967)
.+|..+...|++++|+..|-+|+...|++.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 488899999999999999999999999975
No 335
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=32.94 E-value=56 Score=26.59 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 002100 456 KQLAFHQLGVVMLEREEYKDAQNWFKAAVEA 486 (967)
Q Consensus 456 ~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~ 486 (967)
++..+...|.-.-..|+|++|+.+|..+++.
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4445566667777889999999999888864
No 336
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=32.65 E-value=1.9e+02 Score=31.00 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=32.7
Q ss_pred HHHHHHHHHHh-------CchhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 002100 476 AQNWFKAAVEA-------GHIYSLVGVARTKFKRGHKYSAYKLMNSLIS 517 (967)
Q Consensus 476 A~~~f~~al~~-------~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~ 517 (967)
++..|.+|+.. .|.|...+++..+++.+++.+|+..+..+-.
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 55666666654 5688899999999999999999998776544
No 337
>3p0s_A Capsid protein VP; icosahedral virus capsid, virus-like particle, capsid protei barrel; 3.10A {Bombyx mori densovirus 1}
Probab=31.73 E-value=18 Score=36.55 Aligned_cols=7 Identities=29% Similarity=0.524 Sum_probs=2.9
Q ss_pred ccchhHH
Q 002100 141 EKSGVYL 147 (967)
Q Consensus 141 ~~~~~~~ 147 (967)
||-.+|+
T Consensus 105 ErllMY~ 111 (494)
T 3p0s_A 105 ERLLMYV 111 (494)
T ss_dssp TBGGGTS
T ss_pred HHHhhhh
Confidence 3444444
No 338
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=30.29 E-value=72 Score=26.35 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 002100 457 QLAFHQLGVVMLEREEYKDAQNWFKAAVEA 486 (967)
Q Consensus 457 a~a~~~lG~~~~~~g~y~~A~~~f~~al~~ 486 (967)
+..+-..+..++..|+|++||++.++|...
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 445556788899999999999999988753
No 339
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=30.17 E-value=4.7e+02 Score=27.18 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc
Q 002100 682 FRQSLLLLRLNSQKAAMRSLRLARNY 707 (967)
Q Consensus 682 ~~~g~~~~~~g~~~~A~~~l~~al~~ 707 (967)
...|.-+...|++++|+..|+.++..
T Consensus 118 Lk~gyk~~t~gKf~eAl~~Fr~iL~~ 143 (325)
T 3mv2_A 118 MNEGYKNFKLNKPDIAIECFREAIYR 143 (325)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34577778889999999988887653
No 340
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.84 E-value=2.8e+02 Score=25.70 Aligned_cols=78 Identities=14% Similarity=0.007 Sum_probs=54.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCh--H-----HHH---HHHHHHHHcCChHHHHHHHHHHHhc---CCC---ch
Q 002100 886 RYRAAVLMDDHKEAEAIAELSRAIAFKPDL--Q-----LLH---LRAAFHDSMGDHLHTQRDCEAALCL---DPN---HT 949 (967)
Q Consensus 886 ~~la~~~~~~g~~~eAi~~~~kal~~~p~~--~-----~~~---~~a~~~~~~g~~~~A~~~~~~al~~---~P~---~~ 949 (967)
+..+..++..|+|=+|=+.++.+....+.. + .+. .-|..+...||...|...+++++.. .|. -.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~~~~GI 115 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPNDYYGV 115 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCTTGGGB
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCccCCc
Confidence 456778888899999999999999876553 2 222 2345667789999999999999763 232 23
Q ss_pred hHHHHHHHHHhhhh
Q 002100 950 DTLELYDKATERVN 963 (967)
Q Consensus 950 ~~l~l~~r~~~~~~ 963 (967)
++..+...+++...
T Consensus 116 Dv~~L~~~~~~~l~ 129 (161)
T 2ijq_A 116 DLLDVRTTVTNALS 129 (161)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh
Confidence 55555665555443
No 341
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.32 E-value=4.2e+02 Score=32.45 Aligned_cols=109 Identities=9% Similarity=-0.058 Sum_probs=67.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-ccchHHHHHHHHHhhhcCCCC
Q 002100 684 QSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISI-QRSFEAFFLKAYALADSSLNP 762 (967)
Q Consensus 684 ~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~~~~la~~~~~~ 762 (967)
+...+...+.++-|.. .+..-|.++-.-+.+|.++...|++++|...|++|-.- .... ...
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~--------------~~~ 877 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHT--------------SQF 877 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSC--------------CSC
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCc--------------ccc
Confidence 4555667778776544 45666777777789999999999999999999987521 1100 000
Q ss_pred CchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc
Q 002100 763 ESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN 814 (967)
Q Consensus 763 ~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 814 (967)
........++.. ..........|.....++...+-++-+++..+.|+.
T Consensus 878 ~~~~~~~~ll~~----~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 878 AVLREFQEIAEK----YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp GGGHHHHHHHHH----TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhhhhhccCc----ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 000111112111 111122234667777888888888888888888886
No 342
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=29.05 E-value=8.5 Score=34.48 Aligned_cols=32 Identities=9% Similarity=0.047 Sum_probs=22.4
Q ss_pred CCChhhHHHHHHHHHHhChHHHHHHHHHHHhhh
Q 002100 356 VSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRE 388 (967)
Q Consensus 356 ~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~ 388 (967)
++ .+|+..++..|..++++.|++.|.+|+.+.
T Consensus 96 i~-~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 96 MN-VGDQDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp CC-TTTHHHHHHHHHHTTBTTSSCC--------
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 45 789999999999999999999999998765
No 343
>3dza_A Uncharacterized putative membrane protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=28.62 E-value=3e+02 Score=26.13 Aligned_cols=60 Identities=8% Similarity=-0.129 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHh-------ccCC--ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 555 PYKYRAILLVEENKLAAAITEINRII-------GFKV--SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 555 ~~~~la~~~~~~g~~~~A~~~~~~al-------~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
.....+.-+++.|+...|++.++-+= ..-| ...-...+|..++..|+|.+|-..++.+..
T Consensus 110 aAI~~AN~~Lk~Gd~~~A~~~LklAgvdv~~~~allPL~qT~~~V~~A~~ll~~gk~yeAn~aLk~Aed 178 (191)
T 3dza_A 110 SAIQSANEKLAKGDQKGAIDTLRLAGIGVIENQYLMPLNQTRKAVAQSQELLKAGKYYEANLVLKGAEE 178 (191)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTCEEEEEEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCCchhhhhhhCChHhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 34567888999999999999998762 2335 456778889999999999999999888865
No 344
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=28.35 E-value=54 Score=27.09 Aligned_cols=27 Identities=30% Similarity=0.181 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002100 883 YPYRYRAAVLMDDHKEAEAIAELSRAI 909 (967)
Q Consensus 883 ~~~~~la~~~~~~g~~~eAi~~~~kal 909 (967)
..+..+|..+.+.|+|++||++.+++.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 345568888999999999988776664
No 345
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=28.29 E-value=2.5e+02 Score=27.10 Aligned_cols=67 Identities=9% Similarity=-0.049 Sum_probs=48.6
Q ss_pred CCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc--c--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 002100 782 GLRKGQALNNLGSVYVDCEKLDLAADCYMNALN--I--KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKAR 849 (967)
Q Consensus 782 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 849 (967)
+++....|...+... ..++..++.+.|.-... + .....|...|..+...|++.+|.+.|+..|+..-
T Consensus 76 D~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 76 DPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp CHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 344455666666543 34446788888877665 3 3445788899999999999999999999998653
No 346
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=27.81 E-value=4.8e+02 Score=26.21 Aligned_cols=58 Identities=9% Similarity=0.022 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHhccC--C--ChhHHHHHHHHHHHh-cCHHHHHHHHHH
Q 002100 554 YPYKYRAILLVEENKLAAAITEINRIIGFK--V--SPDCLELRAWISIAL-EDYDGALRDVRA 611 (967)
Q Consensus 554 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p--~~~~~~~la~~~~~~-g~~~~A~~~~~~ 611 (967)
.-+.++|.+..+.++|++.+..+.++++.+ + +.+-..++...|-+. |....+.+.+..
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiiss 71 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISS 71 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 345678888999999999999999999987 6 677667776666442 444555555444
No 347
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=27.51 E-value=1.3e+02 Score=31.67 Aligned_cols=78 Identities=23% Similarity=0.174 Sum_probs=53.5
Q ss_pred HHHHHHHHHhCC---HHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhcc-----CCCCchHHHHHHHHHH
Q 002100 822 QGLARVYHLKNQ---RKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQL-----DPMRTYPYRYRAAVLM 893 (967)
Q Consensus 822 ~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l-----~p~~~~~~~~la~~~~ 893 (967)
..|-.+++..|. |.-|+-.+-.+-+..|.. ....++..|.+|+.. ...+.++|.++|..++
T Consensus 239 q~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~-----------gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~y 307 (472)
T 3re2_A 239 QELLWLLYDMGHIKTYPMAIANLGDLEEISPTP-----------GRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYY 307 (472)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCT-----------TSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHHhcCCCC-----------CCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhh
Confidence 445556665553 555666666666666642 233356666666553 4567899999999999
Q ss_pred hCCCHHHHHHHHHHHHh
Q 002100 894 DDHKEAEAIAELSRAIA 910 (967)
Q Consensus 894 ~~g~~~eAi~~~~kal~ 910 (967)
+.+++.+|+..+..+-.
T Consensus 308 R~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 308 RKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHH
Confidence 99999999999887754
No 348
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=27.20 E-value=4.9e+02 Score=26.13 Aligned_cols=58 Identities=9% Similarity=0.032 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHhccC---C--ChhHHHHHHHHHHHh-cCHHHHHHHHHH
Q 002100 554 YPYKYRAILLVEENKLAAAITEINRIIGFK---V--SPDCLELRAWISIAL-EDYDGALRDVRA 611 (967)
Q Consensus 554 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p--~~~~~~~la~~~~~~-g~~~~A~~~~~~ 611 (967)
.-+.++|.+..+.++|++.++...++++.+ + +.+-..++...|-+. |....+.+.+..
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiiss 92 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIISS 92 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345678888899999999999999999987 6 677777777777543 444445544443
No 349
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=26.70 E-value=1.4e+02 Score=29.00 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCch
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHI 489 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~ 489 (967)
+...-+|.+|..++.+++|.+|.+.|..|+...|.
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 44556789999999999999999999999998663
No 350
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.41 E-value=6.6e+02 Score=30.65 Aligned_cols=113 Identities=15% Similarity=0.055 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCchHHhhhhhhhhhHhh
Q 002100 557 KYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTL-DPSYMMFYGQLHGDNLVET 634 (967)
Q Consensus 557 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~~~~~~~~~~~~ 634 (967)
..+...+...+.++-|.+ .+..-| ++-.-+.+|.+|+..|++++|...|+++-.- ........
T Consensus 814 ~~l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~----------- 878 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA----------- 878 (950)
T ss_dssp HHHHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCG-----------
T ss_pred HHHHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCccccc-----------
Confidence 345666777888876543 445556 6666689999999999999999999887422 11110000
Q ss_pred hHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 002100 635 LQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYST 709 (967)
Q Consensus 635 l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p 709 (967)
.... ...+-...+.......+|.....++-..+-++-++...+.|++...
T Consensus 879 ~~~~-------------------------~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~ 928 (950)
T 4gq2_M 879 VLRE-------------------------FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE 928 (950)
T ss_dssp GGHH-------------------------HHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred chhh-------------------------hhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Confidence 0000 0000001111111223677778888888999999999999987543
No 351
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=26.37 E-value=1.4e+02 Score=24.12 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=9.6
Q ss_pred HHHHHcCChHHHHHHHHHHH
Q 002100 923 AFHDSMGDHLHTQRDCEAAL 942 (967)
Q Consensus 923 ~~~~~~g~~~~A~~~~~~al 942 (967)
.-..+.|++++|+..|..++
T Consensus 27 ve~D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 27 VKADKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHH
Confidence 33344555555555544443
No 352
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=26.22 E-value=3e+02 Score=26.47 Aligned_cols=32 Identities=16% Similarity=-0.050 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 883 YPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 883 ~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
..|...|..+...|++.+|.+.|+..++....
T Consensus 116 lfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 116 LFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 33333444444444444444444444444433
No 353
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=26.21 E-value=15 Score=33.42 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=10.0
Q ss_pred CCcccEEEEE---cCeEEEeh
Q 002100 253 DEDWDMSFCI---GNDEIRCV 270 (967)
Q Consensus 253 ~~~~Dv~~~v---~~~~~~~h 270 (967)
++...|+|.. +.-.|+||
T Consensus 104 Get~~v~f~~~~pG~y~f~C~ 124 (139)
T 2aan_A 104 NETVEVTFTAPAAGTYLYICT 124 (139)
T ss_dssp TCEEEEEEECCSSEEEEEECC
T ss_pred CCEEEEEEECCCCeEEEEEcC
Confidence 3445666663 44456665
No 354
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=25.50 E-value=87 Score=26.08 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 002100 456 KQLAFHQLGVVMLEREEYKDAQNWFKAAVEA 486 (967)
Q Consensus 456 ~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~ 486 (967)
.+..+...|.-.-..|+|++|+.+|..+++.
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444555666677788999999999888874
No 355
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=25.06 E-value=46 Score=33.60 Aligned_cols=34 Identities=9% Similarity=-0.015 Sum_probs=30.1
Q ss_pred CCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhh
Q 002100 356 VSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELP 390 (967)
Q Consensus 356 ~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~ 390 (967)
++ .+|+..++..|..++++.|++.|.+|+.+++.
T Consensus 99 i~-~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~ 132 (256)
T 3hve_A 99 LN-EDTIQDVVQAADLLLLTDLKTLCCEFLEGCIA 132 (256)
T ss_dssp CC--CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCC
T ss_pred cc-HhHHHHHHHHHHHHChHHHHHHHHHHHHhhCC
Confidence 44 78999999999999999999999999998764
No 356
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=25.03 E-value=59 Score=26.14 Aligned_cols=27 Identities=11% Similarity=0.178 Sum_probs=22.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHh
Q 002100 460 FHQLGVVMLEREEYKDAQNWFKAAVEA 486 (967)
Q Consensus 460 ~~~lG~~~~~~g~y~~A~~~f~~al~~ 486 (967)
...+|+-|...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 345777788889999999999999875
No 357
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=25.01 E-value=5.1e+02 Score=25.56 Aligned_cols=57 Identities=12% Similarity=0.199 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHhccCC--ChhHHHHHHHHHHHh-cCHHHHHHHHHH
Q 002100 555 PYKYRAILLVEENKLAAAITEINRIIGFKV--SPDCLELRAWISIAL-EDYDGALRDVRA 611 (967)
Q Consensus 555 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~-g~~~~A~~~~~~ 611 (967)
-+.++|.+..+.++|++.++...++++.++ +.+-..++...|-+. |....+.+.+..
T Consensus 7 ~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiiss 66 (234)
T 2br9_A 7 DLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISS 66 (234)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 456788889999999999999999999887 677777777776543 444444444433
No 358
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=24.88 E-value=4e+02 Score=24.33 Aligned_cols=77 Identities=13% Similarity=0.025 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCC------CCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc--c--CcHHHHHHHHHHHHHhCCHHHH
Q 002100 768 VIQLLEEALRCPS------DGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN--I--KHTRAHQGLARVYHLKNQRKAA 837 (967)
Q Consensus 768 a~~~le~~~~~~~------~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~--~~~~a~~~la~~~~~~g~~~~A 837 (967)
...+|++..+... ++++....|...+... +++.+.|.-... + .....|..-|..+...|++.+|
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A 120 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHA 120 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 5556666654433 2344445555555432 337777877766 3 3445788899999999999999
Q ss_pred HHHHHHHHHHccC
Q 002100 838 YDEMTKLIEKARN 850 (967)
Q Consensus 838 ~~~~~~al~~~p~ 850 (967)
.+.|+..|+..-.
T Consensus 121 ~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 121 SAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTCB
T ss_pred HHHHHHHHHcCCc
Confidence 9999999986543
No 359
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=24.24 E-value=1.8e+02 Score=23.56 Aligned_cols=16 Identities=19% Similarity=0.084 Sum_probs=6.6
Q ss_pred HHcCChHHHHHHHHHH
Q 002100 926 DSMGDHLHTQRDCEAA 941 (967)
Q Consensus 926 ~~~g~~~~A~~~~~~a 941 (967)
.+.|++++|+..|..+
T Consensus 22 D~~g~y~eAl~lY~~a 37 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKA 37 (83)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 3344444444444333
No 360
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=24.07 E-value=4.7e+02 Score=30.38 Aligned_cols=20 Identities=0% Similarity=0.104 Sum_probs=12.6
Q ss_pred HhcCcHHHHHHHHHHHhccCC
Q 002100 564 VEENKLAAAITEINRIIGFKV 584 (967)
Q Consensus 564 ~~~g~~~~A~~~~~~al~~~p 584 (967)
+..|+|++|++.+++ +.+-|
T Consensus 549 ~~~g~~~~AL~~i~~-L~llP 568 (661)
T 2qx5_A 549 YFNKQWQETLSQMEL-LDLLP 568 (661)
T ss_dssp HHTTCHHHHHHHHHH-TSCSC
T ss_pred HHcCCHHHHHHHHHh-CCCCC
Confidence 566777777766666 34555
No 361
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=24.06 E-value=59 Score=30.25 Aligned_cols=78 Identities=10% Similarity=0.103 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHhchhChHH----------------HHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHh
Q 002100 323 SFDPRLVLELLSFANRFCCEE----------------LKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLL 386 (967)
Q Consensus 323 ~~~~~~~~~ll~~A~~~~~~~----------------l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~ 386 (967)
.++...+..++..+.+..-.. +..--.+|+. ++ .+++..++..|...+.+.|.+.|.+++.
T Consensus 46 ~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~--vd-~~~l~eLi~AAnyL~I~~Lldl~c~~vA 122 (160)
T 2p1m_A 46 NVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMK--ID-QATLFELILAANYLNIKNLLDLTCQTVA 122 (160)
T ss_dssp TSCHHHHHHHHHC---------------------------------------------CHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHc--CC-HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 677778888888776654221 1111122332 66 8899999999999999999999999998
Q ss_pred hhhhhcCCchhHhhhhcc
Q 002100 387 RELPCSMQNPNVMRIFCS 404 (967)
Q Consensus 387 ~~~~~~l~~~~~~~ll~s 404 (967)
..+.. .+.+++.++|.-
T Consensus 123 ~~ikg-kt~eeir~~f~I 139 (160)
T 2p1m_A 123 DMIKG-KTPEEIRTTFNI 139 (160)
T ss_dssp HTTTT-CCHHHHHHHTTC
T ss_pred HHHcC-CCHHHHHHHcCC
Confidence 87764 556667777664
No 362
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=23.99 E-value=4.2e+02 Score=24.21 Aligned_cols=93 Identities=13% Similarity=0.035 Sum_probs=53.9
Q ss_pred HHHHHHHHHhccCcccccchHHHHHHHHHHHhh------hchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHh--Cchh
Q 002100 419 FVLYYFLSQIGMEEDMKSNTTVMLLERLVESAT------ESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEA--GHIY 490 (967)
Q Consensus 419 ~~l~~~l~~l~~~~~~~~~~~~~ll~~l~~~~~------~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~--~~~~ 490 (967)
..+..++.|+.............+|++..+... +++.-...|...+.. .+++.+.|+..... +...
T Consensus 27 ~~w~~YI~W~e~~~P~g~~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~------~~dp~~if~~L~~~~IG~~~ 100 (152)
T 4a1g_A 27 GEWERYIQWVEENFPENKEYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY------NSDLHQFFEFLYNHGIGTLS 100 (152)
T ss_dssp HHHHHHHHHHHTTCSSCTHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT------BSCHHHHHHHHHTTTTTTTB
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh------cCCHHHHHHHHHHCCCcHHH
Confidence 466778888875443333345566666655432 344444444444332 34478888877765 4444
Q ss_pred HHHH--HHHHHHhcCChHHHHHHHHHHHh
Q 002100 491 SLVG--VARTKFKRGHKYSAYKLMNSLIS 517 (967)
Q Consensus 491 a~~~--la~~~~~~g~~~~A~~~l~~~i~ 517 (967)
+..+ .|..+...|++.+|..+|+..++
T Consensus 101 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 101 SPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444 45556667777777777776666
No 363
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=23.61 E-value=2.4e+02 Score=29.76 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=17.5
Q ss_pred CCchhHHHHHHHHHhcCcHHHHHHHHHHH
Q 002100 551 TLSYPYKYRAILLVEENKLAAAITEINRI 579 (967)
Q Consensus 551 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 579 (967)
...++|.++|-.+++.+++.+|+..+..+
T Consensus 294 ~HvYPYtylgGy~yR~~~~reAl~~WA~A 322 (472)
T 3re2_A 294 HHIYPYTYLGGYYYRKKKYYEAIASWVDA 322 (472)
T ss_dssp CCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCccchhhhhhhhhhcchHHHHHHHHHHH
Confidence 34556666666666666666666655444
No 364
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=23.59 E-value=53 Score=33.69 Aligned_cols=32 Identities=16% Similarity=0.093 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHHhChHHHHHHHHHHHhhhhh
Q 002100 359 IEDAVMLIEYGLEEAAYLLVAACLQVLLRELP 390 (967)
Q Consensus 359 ~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~ 390 (967)
.+|+..++..|..++++.|++.|.+|+.+++.
T Consensus 109 ~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~ 140 (279)
T 3i3n_A 109 TGSVHEVLELADRFLLIRLKEFCGEFLKKKLH 140 (279)
T ss_dssp TTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCC
Confidence 68999999999999999999999999998764
No 365
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=23.52 E-value=1e+02 Score=25.06 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 002100 456 KQLAFHQLGVVMLEREEYKDAQNWFKAAVEA 486 (967)
Q Consensus 456 ~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~ 486 (967)
++..+...|.-.-..|+|++|+.+|..+++.
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444455555666779999999999988874
No 366
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=22.79 E-value=1e+02 Score=25.21 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 002100 459 AFHQLGVVMLEREEYKDAQNWFKAAVEA 486 (967)
Q Consensus 459 a~~~lG~~~~~~g~y~~A~~~f~~al~~ 486 (967)
.+...|.-.-..|+|++|+.+|..+++.
T Consensus 18 ~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 18 TVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555566789999999999988864
No 367
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.45 E-value=4.6e+02 Score=24.18 Aligned_cols=59 Identities=14% Similarity=0.045 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHhccCCCh--h-------HH-HHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 557 KYRAILLVEENKLAAAITEINRIIGFKVSP--D-------CL-ELRAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 557 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~-------~~-~~la~~~~~~g~~~~A~~~~~~al~l 615 (967)
+..|..+++.|+|-+|-+.++.+-...+.+ + +. ...|..+...|+...|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456788889999999999999998876622 2 22 33344567789999999999999874
No 368
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=22.27 E-value=9.5e+02 Score=27.76 Aligned_cols=31 Identities=23% Similarity=0.031 Sum_probs=22.5
Q ss_pred HHHHHHHHH--HHcCChHHHHHHHHHHHhcCCCc
Q 002100 917 LLHLRAAFH--DSMGDHLHTQRDCEAALCLDPNH 948 (967)
Q Consensus 917 ~~~~~a~~~--~~~g~~~~A~~~~~~al~~~P~~ 948 (967)
.+..+..++ ...|++++|++.+++ +.+-|.+
T Consensus 538 lLl~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 538 LLLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 344444444 889999999999998 5677877
No 369
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=22.02 E-value=2.5e+02 Score=30.14 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=17.6
Q ss_pred CCchhHHHHHHHHHhcCcHHHHHHHHHHH
Q 002100 551 TLSYPYKYRAILLVEENKLAAAITEINRI 579 (967)
Q Consensus 551 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 579 (967)
...++|.++|-.+++.+++.+|+..+..+
T Consensus 316 ~HvYPYtYlgGy~yR~~~~reAl~~WA~A 344 (550)
T 3u84_A 316 EHIYPYMYLAGYHCRNRNVREALQAWADT 344 (550)
T ss_dssp CCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCccceeecchhhhhcchHHHHHHHHHHH
Confidence 34566666666666666666666655444
No 370
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=21.25 E-value=1e+02 Score=26.98 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 002100 457 QLAFHQLGVVMLEREEYKDAQNWFKAAVEA 486 (967)
Q Consensus 457 a~a~~~lG~~~~~~g~y~~A~~~f~~al~~ 486 (967)
+..+...|.-.-..|+|++|+.+|..+++.
T Consensus 18 Ai~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 18 AIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 334444555556678999999999888874
No 371
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=21.16 E-value=2.1e+02 Score=23.75 Aligned_cols=73 Identities=18% Similarity=0.034 Sum_probs=50.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCChH-----HHH--HHHHHHHHcCChHHHHHHHHHHHh-c--CCC---chhHHH
Q 002100 887 YRAAVLMDDHKEAEAIAELSRAIAFKPDLQ-----LLH--LRAAFHDSMGDHLHTQRDCEAALC-L--DPN---HTDTLE 953 (967)
Q Consensus 887 ~la~~~~~~g~~~eAi~~~~kal~~~p~~~-----~~~--~~a~~~~~~g~~~~A~~~~~~al~-~--~P~---~~~~l~ 953 (967)
..|..++..|+|=+|=+.++.+....|+++ .+. .-|..+...||. |...+++++. + .|. ..++-.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~~~~~gidv~~ 83 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLPCPLMGLDWRS 83 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCCSSBTTBCHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCCCccCCcCHHH
Confidence 456778888999999999999998887643 222 234556678888 9999999976 2 233 245555
Q ss_pred HHHHHHhh
Q 002100 954 LYDKATER 961 (967)
Q Consensus 954 l~~r~~~~ 961 (967)
+...+++.
T Consensus 84 L~~~~~~~ 91 (94)
T 2cwy_A 84 LLQEARRR 91 (94)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
Done!