Query 002101
Match_columns 967
No_of_seqs 634 out of 5112
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 16:32:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.2E-61 4.8E-66 604.9 42.9 455 370-883 156-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 8.3E-56 1.8E-60 554.6 41.1 520 253-884 69-589 (968)
3 KOG4194 Membrane glycoprotein 100.0 4.9E-40 1.1E-44 343.2 6.5 378 452-886 78-459 (873)
4 KOG4194 Membrane glycoprotein 100.0 7.5E-38 1.6E-42 326.9 3.7 373 428-858 79-455 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 7.7E-39 1.7E-43 320.1 -13.3 476 225-855 45-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1.4E-37 3E-42 311.1 -12.7 475 198-831 45-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 9.3E-34 2E-38 312.8 -6.9 395 255-706 23-420 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.9E-32 6.3E-37 301.1 -4.1 419 200-706 23-443 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 7.7E-32 1.7E-36 283.5 -1.3 384 355-851 9-395 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 3.3E-32 7.2E-37 286.2 -5.1 365 408-859 12-379 (1255)
11 KOG4237 Extracellular matrix p 99.9 8.1E-27 1.8E-31 234.2 -2.3 134 426-561 66-200 (498)
12 PLN03210 Resistant to P. syrin 99.9 9.9E-23 2.1E-27 255.1 27.0 339 423-829 554-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 5.4E-26 1.2E-30 228.3 -3.7 409 432-852 51-498 (498)
14 PLN03210 Resistant to P. syrin 99.9 4.4E-22 9.6E-27 249.3 27.0 342 443-853 549-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.8 8.4E-21 1.8E-25 219.1 16.8 264 453-838 202-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 3.7E-20 8E-25 213.9 17.5 268 427-817 201-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.6E-18 3.5E-23 202.0 11.0 119 452-586 178-296 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 6.3E-18 1.4E-22 197.2 13.3 244 430-706 181-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.3E-18 2.9E-23 190.0 -0.3 66 641-706 161-234 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 8.7E-19 1.9E-23 191.5 -1.9 239 547-854 49-319 (319)
21 KOG0617 Ras suppressor protein 99.6 9E-18 2E-22 149.7 -5.0 185 615-859 28-216 (264)
22 KOG0617 Ras suppressor protein 99.6 4E-17 8.6E-22 145.6 -4.8 167 641-866 29-196 (264)
23 PLN03150 hypothetical protein; 99.5 1.7E-14 3.6E-19 168.6 10.6 118 771-888 419-538 (623)
24 KOG1909 Ran GTPase-activating 99.3 4.4E-13 9.6E-18 134.5 -1.0 258 18-314 26-310 (382)
25 PLN03150 hypothetical protein; 99.2 2.6E-11 5.6E-16 142.0 11.7 114 694-860 419-533 (623)
26 KOG1909 Ran GTPase-activating 99.1 1.9E-11 4.1E-16 122.9 2.0 153 16-169 52-234 (382)
27 COG4886 Leucine-rich repeat (L 99.1 2E-10 4.4E-15 129.0 8.8 198 577-860 97-295 (394)
28 KOG0532 Leucine-rich repeat (L 99.1 3.7E-12 7.9E-17 135.5 -5.2 176 619-857 74-249 (722)
29 KOG3207 Beta-tubulin folding c 99.1 5E-11 1.1E-15 123.2 2.9 88 224-315 245-339 (505)
30 KOG0532 Leucine-rich repeat (L 99.1 8.5E-12 1.8E-16 132.7 -3.4 175 425-610 73-247 (722)
31 PF14580 LRR_9: Leucine-rich r 99.1 8.8E-11 1.9E-15 111.6 3.6 131 18-156 15-148 (175)
32 COG4886 Leucine-rich repeat (L 99.0 5.7E-10 1.2E-14 125.4 8.5 182 427-618 116-298 (394)
33 KOG1259 Nischarin, modulator o 99.0 9.2E-11 2E-15 114.8 1.5 129 644-831 283-412 (490)
34 KOG3207 Beta-tubulin folding c 99.0 8.7E-11 1.9E-15 121.5 1.1 185 401-610 119-314 (505)
35 KOG1259 Nischarin, modulator o 98.9 3E-10 6.5E-15 111.3 0.5 133 547-709 282-415 (490)
36 PF14580 LRR_9: Leucine-rich r 98.9 1.4E-09 3.1E-14 103.3 5.1 122 6-131 26-149 (175)
37 KOG2120 SCF ubiquitin ligase, 98.9 1.5E-10 3.3E-15 113.5 -2.2 209 23-264 137-349 (419)
38 KOG0531 Protein phosphatase 1, 98.8 5.7E-10 1.2E-14 125.2 -0.1 248 524-860 71-323 (414)
39 PF13855 LRR_8: Leucine rich r 98.8 3.2E-09 6.9E-14 82.8 3.2 60 771-830 2-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.7 6.9E-09 1.5E-13 80.9 3.0 61 794-854 1-61 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.7 2.6E-08 5.6E-13 119.2 7.2 130 22-156 545-676 (889)
42 KOG0531 Protein phosphatase 1, 98.7 2.4E-09 5.3E-14 120.2 -1.8 219 546-855 69-290 (414)
43 KOG4658 Apoptotic ATPase [Sign 98.7 1.9E-08 4.1E-13 120.3 5.7 150 453-606 524-677 (889)
44 KOG2120 SCF ubiquitin ligase, 98.5 6.5E-09 1.4E-13 102.2 -2.7 210 22-263 159-373 (419)
45 KOG4341 F-box protein containi 98.5 1.4E-08 3E-13 105.0 -2.0 290 22-315 138-439 (483)
46 COG5238 RNA1 Ran GTPase-activa 98.3 1.3E-07 2.8E-12 92.1 0.4 259 18-315 26-316 (388)
47 KOG1859 Leucine-rich repeat pr 98.3 3.1E-08 6.8E-13 108.8 -5.6 127 670-856 165-293 (1096)
48 KOG2982 Uncharacterized conser 98.2 5.5E-07 1.2E-11 89.0 3.0 219 41-293 40-265 (418)
49 KOG4579 Leucine-rich repeat (L 98.2 5.1E-08 1.1E-12 84.8 -3.7 88 771-861 78-165 (177)
50 KOG4341 F-box protein containi 98.2 5.8E-08 1.3E-12 100.5 -4.2 289 46-339 138-438 (483)
51 KOG2982 Uncharacterized conser 98.2 4.3E-07 9.3E-12 89.7 1.9 226 25-261 48-287 (418)
52 KOG1859 Leucine-rich repeat pr 98.2 9.8E-08 2.1E-12 105.1 -4.4 194 426-632 83-291 (1096)
53 KOG3665 ZYG-1-like serine/thre 98.1 3.5E-06 7.7E-11 98.5 5.0 154 22-179 122-281 (699)
54 KOG3665 ZYG-1-like serine/thre 98.0 2.6E-06 5.6E-11 99.6 2.0 59 94-157 146-204 (699)
55 KOG4579 Leucine-rich repeat (L 97.9 7.9E-07 1.7E-11 77.6 -3.6 83 477-562 54-136 (177)
56 COG5238 RNA1 Ran GTPase-activa 97.8 3.1E-05 6.8E-10 75.8 5.6 164 1-165 37-231 (388)
57 KOG1644 U2-associated snRNP A' 97.8 4.6E-05 9.9E-10 71.7 5.7 128 24-158 21-150 (233)
58 PF12799 LRR_4: Leucine Rich r 97.7 2.6E-05 5.6E-10 55.3 2.6 36 795-831 2-37 (44)
59 PF12799 LRR_4: Leucine Rich r 97.7 2.9E-05 6.3E-10 55.0 2.9 37 771-808 2-38 (44)
60 PRK15386 type III secretion pr 97.7 8.5E-05 1.8E-09 79.8 7.7 32 794-828 156-187 (426)
61 KOG1644 U2-associated snRNP A' 97.7 5.2E-05 1.1E-09 71.3 5.1 109 23-134 43-152 (233)
62 PF13306 LRR_5: Leucine rich r 97.4 0.00026 5.7E-09 65.2 5.5 121 472-599 8-128 (129)
63 PF13306 LRR_5: Leucine rich r 97.4 0.00031 6.8E-09 64.6 6.0 124 446-576 6-129 (129)
64 PRK15386 type III secretion pr 97.4 0.00057 1.2E-08 73.6 8.5 54 500-559 51-104 (426)
65 KOG2739 Leucine-rich acidic nu 97.2 0.00019 4.1E-09 70.9 2.3 111 42-157 39-152 (260)
66 KOG1947 Leucine rich repeat pr 97.0 0.00026 5.6E-09 82.3 1.3 117 44-161 186-308 (482)
67 KOG2739 Leucine-rich acidic nu 96.6 0.0013 2.9E-08 65.1 2.5 85 253-340 43-129 (260)
68 KOG2123 Uncharacterized conser 96.3 0.00033 7.2E-09 69.2 -3.2 103 45-154 18-123 (388)
69 KOG2123 Uncharacterized conser 96.2 0.00027 5.8E-09 69.8 -4.5 105 19-128 16-123 (388)
70 KOG1947 Leucine rich repeat pr 96.1 0.0009 2E-08 77.8 -2.1 62 451-512 242-306 (482)
71 PF00560 LRR_1: Leucine Rich R 94.8 0.01 2.2E-07 34.8 0.4 12 796-807 2-13 (22)
72 PF00560 LRR_1: Leucine Rich R 94.7 0.013 2.9E-07 34.3 0.8 18 820-838 2-19 (22)
73 KOG4308 LRR-containing protein 94.1 0.0014 3.1E-08 73.6 -7.8 198 73-290 89-303 (478)
74 KOG4308 LRR-containing protein 92.6 0.0054 1.2E-07 69.0 -6.4 36 24-59 89-128 (478)
75 KOG3864 Uncharacterized conser 91.7 0.033 7.2E-07 53.1 -1.2 82 23-105 102-185 (221)
76 smart00370 LRR Leucine-rich re 90.3 0.3 6.5E-06 29.9 2.5 23 45-68 1-23 (26)
77 smart00369 LRR_TYP Leucine-ric 90.3 0.3 6.5E-06 29.9 2.5 23 45-68 1-23 (26)
78 PF13504 LRR_7: Leucine rich r 89.6 0.24 5.1E-06 26.9 1.4 13 477-489 2-14 (17)
79 smart00369 LRR_TYP Leucine-ric 88.9 0.31 6.7E-06 29.9 1.8 14 795-808 3-16 (26)
80 smart00370 LRR Leucine-rich re 88.9 0.31 6.7E-06 29.9 1.8 14 795-808 3-16 (26)
81 KOG0473 Leucine-rich repeat pr 88.9 0.012 2.7E-07 56.8 -6.6 87 17-108 37-123 (326)
82 KOG0473 Leucine-rich repeat pr 85.6 0.026 5.5E-07 54.8 -6.6 82 771-855 43-124 (326)
83 KOG3864 Uncharacterized conser 84.9 0.21 4.5E-06 47.9 -0.9 82 73-157 103-185 (221)
84 PF13516 LRR_6: Leucine Rich r 79.2 1.1 2.4E-05 26.7 1.2 20 148-167 2-21 (24)
85 smart00365 LRR_SD22 Leucine-ri 66.6 5.3 0.00011 24.5 1.9 16 71-86 2-17 (26)
86 KOG4242 Predicted myosin-I-bin 60.8 42 0.00092 37.1 8.6 61 477-537 215-280 (553)
87 smart00364 LRR_BAC Leucine-ric 60.4 6.2 0.00013 24.1 1.4 13 819-831 3-15 (26)
88 PF08693 SKG6: Transmembrane a 58.6 3.5 7.6E-05 28.1 0.2 9 931-939 30-38 (40)
89 smart00368 LRR_RI Leucine rich 54.4 12 0.00026 23.3 2.1 22 148-169 2-23 (28)
90 PF15102 TMEM154: TMEM154 prot 50.3 10 0.00022 34.5 1.7 22 918-939 66-87 (146)
91 PF01102 Glycophorin_A: Glycop 43.8 12 0.00026 33.2 1.2 26 914-939 67-93 (122)
92 smart00367 LRR_CC Leucine-rich 40.7 26 0.00056 21.3 2.0 11 148-158 2-12 (26)
93 TIGR00864 PCC polycystin catio 40.2 17 0.00036 49.3 2.1 34 800-833 1-34 (2740)
94 PHA03099 epidermal growth fact 38.2 15 0.00033 32.2 1.0 32 917-948 106-137 (139)
95 KOG3763 mRNA export factor TAP 38.1 28 0.00061 39.2 3.2 15 452-466 270-284 (585)
96 TIGR00864 PCC polycystin catio 34.4 28 0.00062 47.3 2.9 32 776-807 1-32 (2740)
97 PF07204 Orthoreo_P10: Orthore 30.3 22 0.00048 29.3 0.6 29 910-938 41-69 (98)
98 PF02009 Rifin_STEVOR: Rifin/s 29.5 37 0.00081 35.7 2.3 13 927-939 271-283 (299)
99 KOG3763 mRNA export factor TAP 24.3 48 0.001 37.5 2.1 39 94-132 216-254 (585)
100 PF04478 Mid2: Mid2 like cell 24.2 18 0.00039 33.2 -1.0 7 913-919 51-57 (154)
101 KOG4242 Predicted myosin-I-bin 22.4 5.1E+02 0.011 29.2 9.1 161 2-165 195-371 (553)
102 PTZ00046 rifin; Provisional 21.4 58 0.0012 34.9 1.9 16 927-942 330-345 (358)
103 TIGR01477 RIFIN variant surfac 20.7 61 0.0013 34.6 1.9 15 927-941 325-339 (353)
104 PF08114 PMP1_2: ATPase proteo 20.6 77 0.0017 21.7 1.6 8 933-940 29-36 (43)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-61 Score=604.95 Aligned_cols=455 Identities=36% Similarity=0.547 Sum_probs=408.6
Q ss_pred cChhccCCCCccEEEccCCcCcccCchHHhhcCCCCcEEEccCCcccCcCCCCcCCCCCccEEEecCCcCCcCCChhhhh
Q 002101 370 FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD 449 (967)
Q Consensus 370 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 449 (967)
+|..++.+++|+.|++++|.+.+.+|..+ +++++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+..
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 34455666777778888887777777765 67888888888888888888888888889999999999988888877665
Q ss_pred cCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccc
Q 002101 450 ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 529 (967)
Q Consensus 450 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 529 (967)
+++|++|++++|.+++.+|..++++++|++|++++|++++.+|..+.. +++|++|++++|.+.+.+|..+..+++|++
T Consensus 235 -l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 235 -LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEI 312 (968)
T ss_pred -CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh-ccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence 789999999999998888989999999999999999998888877654 889999999999998888888889999999
Q ss_pred eeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcC
Q 002101 530 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI 609 (967)
Q Consensus 530 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 609 (967)
|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++.+.+|..++.+++|+.|++++|++
T Consensus 313 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l 392 (968)
T PLN00113 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392 (968)
T ss_pred EECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEe
Confidence 99999999988888889999999999999999988999899999999999999999888899999999999999999999
Q ss_pred CcCCCCCcC-CCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChh
Q 002101 610 SGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ 688 (967)
Q Consensus 610 ~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 688 (967)
.+.+|..+. +++|+.|++++|.+.+.+|. .|..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..
T Consensus 393 ~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~ 471 (968)
T PLN00113 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPS-EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS 471 (968)
T ss_pred cccCCHHHhCCCCCCEEECcCCEeeeECCh-hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc
Confidence 988887665 78999999999999888887 8899999999999999999999999999999999999999999888876
Q ss_pred ccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhh
Q 002101 689 LCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRV 768 (967)
Q Consensus 689 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (967)
+ ..++|+.|++++|++++.+|..+..+
T Consensus 472 ~-~~~~L~~L~ls~n~l~~~~~~~~~~l---------------------------------------------------- 498 (968)
T PLN00113 472 F-GSKRLENLDLSRNQFSGAVPRKLGSL---------------------------------------------------- 498 (968)
T ss_pred c-ccccceEEECcCCccCCccChhhhhh----------------------------------------------------
Confidence 6 46899999999999999988877653
Q ss_pred hcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEe
Q 002101 769 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI 848 (967)
Q Consensus 769 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ 848 (967)
+.|++|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..|+.+++|+.|||++|+++|.+|..+..+++|++++
T Consensus 499 -~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ 577 (968)
T PLN00113 499 -SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN 577 (968)
T ss_pred -hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe
Confidence 3899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCccCCCCCcccccccCcccccCCcCCCCCC
Q 002101 849 VAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 883 (967)
Q Consensus 849 ls~N~l~~~~p~~~~~~~~~~~~~~~~n~~lc~~~ 883 (967)
+++|+++|.+|.. +++.++...++.|||.+|+.+
T Consensus 578 ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 578 ISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence 9999999999985 789999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.3e-56 Score=554.65 Aligned_cols=520 Identities=32% Similarity=0.504 Sum_probs=477.5
Q ss_pred CCCcEEEccCCccccccCchhccCCCCcEEecccCcccCCCCcccccCCCCCcEEEcccCCCCCCCCcccccCCCCccEE
Q 002101 253 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF 332 (967)
Q Consensus 253 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 332 (967)
.+++.|+|++|.+.+..+..|..+++|++|++++|+++|.+|...+.++++|++|++++|++.+.++.
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~------------ 136 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR------------ 136 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc------------
Confidence 46889999999999888888999999999999999998888886666889999999998888754432
Q ss_pred eccCCcccccccccCCCCCccceeEEEccCCCCCCCCcChhccCCCCccEEEccCCcCcccCchHHhhcCCCCcEEEccC
Q 002101 333 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN 412 (967)
Q Consensus 333 ~ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 412 (967)
+.+++|++|++++|.+.+.+|..+ +++++|++|++++
T Consensus 137 ------------------------------------------~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~ 173 (968)
T PLN00113 137 ------------------------------------------GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGG 173 (968)
T ss_pred ------------------------------------------cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECcc
Confidence 123457777778888888888875 7999999999999
Q ss_pred CcccCcCCCCcCCCCCccEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCcc
Q 002101 413 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI 492 (967)
Q Consensus 413 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i 492 (967)
|.+.+..+..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..++++++|++|++++|.+++.+
T Consensus 174 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 252 (968)
T PLN00113 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252 (968)
T ss_pred CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecccc
Confidence 9999999999999999999999999999888887765 789999999999999999999999999999999999999888
Q ss_pred chhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCC
Q 002101 493 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 572 (967)
Q Consensus 493 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 572 (967)
|..+. .+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+..+
T Consensus 253 p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 331 (968)
T PLN00113 253 PSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331 (968)
T ss_pred ChhHh-CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC
Confidence 88765 59999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcC-CCcccEEEccCCcCcccCCcccccCCCCCcEEE
Q 002101 573 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLD 651 (967)
Q Consensus 573 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 651 (967)
++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+. ..+|+.|++++|.+.+.+|. .+..+++|+.|+
T Consensus 332 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~~~L~~L~ 410 (968)
T PLN00113 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK-SLGACRSLRRVR 410 (968)
T ss_pred CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH-HHhCCCCCCEEE
Confidence 9999999999999999999999999999999999999998888765 78999999999999999887 889999999999
Q ss_pred CcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCC
Q 002101 652 LSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKP 731 (967)
Q Consensus 652 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (967)
+++|++++..|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++.+.+|..+..
T Consensus 411 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~---------------- 474 (968)
T PLN00113 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS---------------- 474 (968)
T ss_pred CcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc----------------
Confidence 9999999999999999999999999999999999999999999999999999999888765532
Q ss_pred cccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCc
Q 002101 732 FKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP 811 (967)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 811 (967)
++|+.||+++|++++.+|..|..+++|+.|+|++|.+++.+|
T Consensus 475 --------------------------------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 516 (968)
T PLN00113 475 --------------------------------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516 (968)
T ss_pred --------------------------------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC
Confidence 279999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCCCcccccccCcccccCCcCCCCCCC
Q 002101 812 LTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL 884 (967)
Q Consensus 812 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~~n~~lc~~~l 884 (967)
..+..+++|++|+|++|.+++.+|..+..+++|+.|++++|+++|.+|..+..+..+....+.+|+..+..|.
T Consensus 517 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 9999999999999999999999999999999999999999999999998878888888999999998876653
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-40 Score=343.16 Aligned_cols=378 Identities=25% Similarity=0.288 Sum_probs=274.7
Q ss_pred CCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCcccccee
Q 002101 452 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLL 531 (967)
Q Consensus 452 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 531 (967)
+.-++|++++|.+....+..|.++++|+++++.+|.++ .||..... ..+++.|+|.+|.|+.+-.+.+..++.|+.||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 34556777777777666666777777777777777776 66664432 44577777777777766666667777777777
Q ss_pred ccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCc
Q 002101 532 LEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG 611 (967)
Q Consensus 532 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 611 (967)
|+.|.|+.+-...|..-.++++|+|++|+|+..-...|.++.+|..|.|+.|+++...+..|.++++|+.|+|..|++..
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 77777765544566666677777777777776666677777777777777777776666677777777777777777653
Q ss_pred CCCCCc-CCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhcc
Q 002101 612 SLPSCF-YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 690 (967)
Q Consensus 612 ~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 690 (967)
.--..| .+++|+.|.|..|.+. .+.++.|..+.++++|+|..|++...-..|+-++++|+.|+|++|.|....++...
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 322222 2667777777777765 45666888888888888888888877778888888888888888888877788888
Q ss_pred CCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhc
Q 002101 691 RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS 770 (967)
Q Consensus 691 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 770 (967)
..++|++|+|++|+++...+..|..+ .
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L-----------------------------------------------------~ 341 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVL-----------------------------------------------------S 341 (873)
T ss_pred hcccceeEeccccccccCChhHHHHH-----------------------------------------------------H
Confidence 88888888888888887777766553 3
Q ss_pred ccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcc---cccCCCCCCEEECcCCcCcccCCccccCCCcCCeE
Q 002101 771 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL---TFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIF 847 (967)
Q Consensus 771 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 847 (967)
.|++|+|++|.+.......|..+++|++|||++|.++..+.+ .|..|++|+.|+|.+|++..+-..+|..+..|+.|
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccccee
Confidence 778888888888766666788888888888888888877654 47778888888888888875555678888888888
Q ss_pred ecCCCcCccCCCCCcccccccCcccccCCcCCCCCCCCC
Q 002101 848 IVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPI 886 (967)
Q Consensus 848 ~ls~N~l~~~~p~~~~~~~~~~~~~~~~n~~lc~~~l~~ 886 (967)
|+.+|.+-..-|..|.++ .+....+..-.++|+|.+.|
T Consensus 422 dL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~W 459 (873)
T KOG4194|consen 422 DLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKW 459 (873)
T ss_pred cCCCCcceeecccccccc-hhhhhhhcccceEEeccHHH
Confidence 888888777666666555 56666666667788887654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.5e-38 Score=326.87 Aligned_cols=373 Identities=27% Similarity=0.306 Sum_probs=264.2
Q ss_pred CccEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEE
Q 002101 428 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLS 507 (967)
Q Consensus 428 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~ 507 (967)
..+.|++++|.+. .+....+..+|+|+.+++.+|.++ .+|...+...+|+.|+|.+|.|+ ++.......++.|+.||
T Consensus 79 ~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLD 155 (873)
T ss_pred ceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhh
Confidence 3445666666666 455455555667777777777666 55555455555777777777766 55555445566677777
Q ss_pred cccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCcccc
Q 002101 508 LSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG 587 (967)
Q Consensus 508 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 587 (967)
|+.|.|+.+....|..-.++++|+|++|+|+...-..|..+.+|.+|.|+.|+++...+..|.+++.|+.|+|..|+|..
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 77777765555555555667777777777766666666666777777777777765555566667777777777776654
Q ss_pred CCCccccCCCCCCEEeCcCCcCCcCCCCCcC-CCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhh
Q 002101 588 PIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWID 666 (967)
Q Consensus 588 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 666 (967)
.---.|.++++|+.|.+..|.++..-...|. +.+++.|+|..|++. ....+++.+++.|+.|+||+|.|..+-++..+
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhh
Confidence 4345666777777777777776654444444 667777777777765 34445777888888888888888877777777
Q ss_pred CCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchh
Q 002101 667 GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVE 746 (967)
Q Consensus 667 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (967)
.+++|+.|+|++|+|+...+..|..+..|+.|.|++|++..+-...|..
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~------------------------------- 363 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG------------------------------- 363 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH-------------------------------
Confidence 7888888888888888777888888888888888888877555555544
Q ss_pred hhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcc---cccCCCCCCEEECcCccccccCcccccCCCCCCEE
Q 002101 747 KKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP---QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESL 823 (967)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 823 (967)
+.+|++|||++|.+++.+.+ .|.++++|+.|+|.+|++..+...+|..+..||.|
T Consensus 364 ----------------------lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 364 ----------------------LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred ----------------------hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccccee
Confidence 33788888888888876554 37788888888888888887777788888888888
Q ss_pred ECcCCcCcccCCccccCCCcCCeEecCCCcCccCC
Q 002101 824 DLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI 858 (967)
Q Consensus 824 ~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~ 858 (967)
||.+|.|..+-|.+|..+ .|+.|-+..-.+-|.+
T Consensus 422 dL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 422 DLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred cCCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence 888888888888888888 7888877766665544
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=7.7e-39 Score=320.11 Aligned_cols=476 Identities=27% Similarity=0.388 Sum_probs=274.0
Q ss_pred CcccEEecCCCCCCCCCCcccccCCCCCCCCcEEEccCCccccccCchhccCCCCcEEecccCcccCCCCcccccCCCCC
Q 002101 225 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 304 (967)
Q Consensus 225 ~~L~~L~L~~~~l~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L 304 (967)
..++.+.++.|.+.. +. ..+.++..|.+|++++|++. ..|++++.+..++.++.++|+++ .+|+ .++.+.+|
T Consensus 45 v~l~~lils~N~l~~----l~-~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l 116 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV----LR-EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISL 116 (565)
T ss_pred cchhhhhhccCchhh----cc-HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhh
Confidence 345666666666543 11 24555666666666666665 34556666666666666666665 6665 55666666
Q ss_pred cEEEcccCCCCCCCCcccccCCCCccEEeccCCcccccccccCCCCCccceeEEEccCCCCCCCCcChhccCCCCccEEE
Q 002101 305 EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAE 384 (967)
Q Consensus 305 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~ 384 (967)
..++.++|.+..
T Consensus 117 ~~l~~s~n~~~e-------------------------------------------------------------------- 128 (565)
T KOG0472|consen 117 VKLDCSSNELKE-------------------------------------------------------------------- 128 (565)
T ss_pred hhhhccccceee--------------------------------------------------------------------
Confidence 666665554431
Q ss_pred ccCCcCcccCchHHhhcCCCCcEEEccCCcccCcCCCCcCCCCCccEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCC
Q 002101 385 LSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 464 (967)
Q Consensus 385 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 464 (967)
+|+.+ +.+..++.++..+|++.. .|..+..+.++..+++.+|.+. ..|..... +..|+.++...|.+
T Consensus 129 ---------l~~~i-~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 129 ---------LPDSI-GRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLL 195 (565)
T ss_pred ---------cCchH-HHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhh
Confidence 11121 344455555555565553 2333445555555566665555 33433333 44555555555555
Q ss_pred CCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCcc
Q 002101 465 DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS 544 (967)
Q Consensus 465 ~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 544 (967)
+ .+|..++.+.+|+.|++..|++. .+|. |.+|..|++++++.|++.-...+....++++.+||+.+|++. ..|..
T Consensus 196 ~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde 270 (565)
T KOG0472|consen 196 E-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDE 270 (565)
T ss_pred h-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchH
Confidence 4 44555555555555555555555 5552 233555555555555555222222335555555555555555 44555
Q ss_pred CcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccC-----CCCCCE----EeCcCC--------
Q 002101 545 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR-----LDSLQI----LDISDN-------- 607 (967)
Q Consensus 545 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~----L~L~~n-------- 607 (967)
+..+.+|++||+|+|.++ ..|..++++ +|+.|.+.+|.+..+-.+-+.+ ++.|+. =.++..
T Consensus 271 ~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~ 348 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAM 348 (565)
T ss_pred HHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccC
Confidence 555555555555555555 344445555 5555555555443111100000 000100 000000
Q ss_pred -cCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCC--CCCcEEECcCccCCCCcchhhhCCCCCCE-EEcCCCcCcc
Q 002101 608 -NISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC--SSLVTLDLSYNYLNGSIPDWIDGLSQLSH-LNLAHNNLEG 683 (967)
Q Consensus 608 -~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~ 683 (967)
...+..|......+.+.|++++-+++ .+|+..|..- .-.+..++++|++. .+|..+..+..+.+ +.+++|.+ +
T Consensus 349 t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-s 425 (565)
T KOG0472|consen 349 TLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-S 425 (565)
T ss_pred CCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-c
Confidence 00011222222445666666666654 4555444433 23667788888877 66766666655544 44444444 4
Q ss_pred cCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccc
Q 002101 684 EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA 763 (967)
Q Consensus 684 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (967)
.+|..++.+++|..|+|++|.+.. +|..++.
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~------------------------------------------------ 456 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLND-LPEEMGS------------------------------------------------ 456 (565)
T ss_pred cchHHHHhhhcceeeecccchhhh-cchhhhh------------------------------------------------
Confidence 778888888888888888886653 3433333
Q ss_pred cchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCc
Q 002101 764 YQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNT 843 (967)
Q Consensus 764 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 843 (967)
+..|+.||+|.|.+. .+|..+..+..|+.+-.++|++....|+.+++|.+|..|||.+|.+. .+|+.+.++++
T Consensus 457 -----lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmtn 529 (565)
T KOG0472|consen 457 -----LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTN 529 (565)
T ss_pred -----hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccc
Confidence 225888888888887 78888777778888888888888777777888888888888888887 78888888888
Q ss_pred CCeEecCCCcCc
Q 002101 844 LAIFIVAYNNLS 855 (967)
Q Consensus 844 L~~l~ls~N~l~ 855 (967)
|+.|++++|++.
T Consensus 530 L~hLeL~gNpfr 541 (565)
T KOG0472|consen 530 LRHLELDGNPFR 541 (565)
T ss_pred eeEEEecCCccC
Confidence 888888888888
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.4e-37 Score=311.14 Aligned_cols=475 Identities=25% Similarity=0.340 Sum_probs=296.5
Q ss_pred cccceecccccccccccchhhhhhcccCcccEEecCCCCCCCCCCcccccCCCCCCCCcEEEccCCccccccCchhccCC
Q 002101 198 KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTT 277 (967)
Q Consensus 198 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 277 (967)
..+..+.+ +.+.+.... ..+.. +..+++|+++.|.+.. .|+ +++.+..++.++.++|++. .+|..++.+.
T Consensus 45 v~l~~lil--s~N~l~~l~-~dl~n-L~~l~vl~~~~n~l~~----lp~-aig~l~~l~~l~vs~n~ls-~lp~~i~s~~ 114 (565)
T KOG0472|consen 45 VDLQKLIL--SHNDLEVLR-EDLKN-LACLTVLNVHDNKLSQ----LPA-AIGELEALKSLNVSHNKLS-ELPEQIGSLI 114 (565)
T ss_pred cchhhhhh--ccCchhhcc-Hhhhc-ccceeEEEeccchhhh----CCH-HHHHHHHHHHhhcccchHh-hccHHHhhhh
Confidence 35777788 555544333 33444 8889999999999874 554 7888999999999999998 6788999999
Q ss_pred CCcEEecccCcccCCCCcccccCCCCCcEEEcccCCCCCCCCcccccCCCCccEEeccCCcccccccccCCCCCccceeE
Q 002101 278 SLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKS 357 (967)
Q Consensus 278 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~ 357 (967)
+|++++.++|.+. ++|+ .++.+..|+.++..+|++..
T Consensus 115 ~l~~l~~s~n~~~-el~~-~i~~~~~l~dl~~~~N~i~s----------------------------------------- 151 (565)
T KOG0472|consen 115 SLVKLDCSSNELK-ELPD-SIGRLLDLEDLDATNNQISS----------------------------------------- 151 (565)
T ss_pred hhhhhhcccccee-ecCc-hHHHHhhhhhhhcccccccc-----------------------------------------
Confidence 9999999999998 7887 78888899999888887652
Q ss_pred EEccCCCCCCCCcChhccCCCCccEEEccCCcCcccCchHHhhcCCCCcEEEccCCcccCcCCCCcCCCCCccEEEecCC
Q 002101 358 LSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNN 437 (967)
Q Consensus 358 L~Ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 437 (967)
.|+.+.++.++..+++.++++...-|... +++.|++++..+|.+. ..|..++.+.+|..|++.+|
T Consensus 152 ------------lp~~~~~~~~l~~l~~~~n~l~~l~~~~i--~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 152 ------------LPEDMVNLSKLSKLDLEGNKLKALPENHI--AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRN 216 (565)
T ss_pred ------------CchHHHHHHHHHHhhccccchhhCCHHHH--HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhc
Confidence 23444555566677777776654433332 3555555555555443 23334444555555555555
Q ss_pred cCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccc
Q 002101 438 NFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI 517 (967)
Q Consensus 438 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 517 (967)
++. .+| .|.++..|+++.++.|++. .+|......++++.+||+..|++. ..
T Consensus 217 ki~-~lP--------------------------ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~ 267 (565)
T KOG0472|consen 217 KIR-FLP--------------------------EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EV 267 (565)
T ss_pred ccc-cCC--------------------------CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cC
Confidence 544 333 3444444444444444444 444444444444444444444444 34
Q ss_pred cccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCC---CCCEEE-------CC---CCc
Q 002101 518 FSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLK---GLQHIV-------MP---KNH 584 (967)
Q Consensus 518 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~-------l~---~n~ 584 (967)
|+.+.-+.+|++||+++|.++ .+|..++++ .|+.|-+.+|++..+ -..+-+.. -|++|. ++ +..
T Consensus 268 Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~ 344 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGT 344 (565)
T ss_pred chHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCcccc
Confidence 444444444444444444444 334444444 444444444444211 00000000 000000 00 000
Q ss_pred cc-cC-CCc---cccCCCCCCEEeCcCCcCCcCCCCCcCCC---cccEEEccCCcCcccCCcccccCCCCCc-EEECcCc
Q 002101 585 LE-GP-IPV---EFCRLDSLQILDISDNNISGSLPSCFYPL---SIKQVHLSKNMLHGQLKEGTFFNCSSLV-TLDLSYN 655 (967)
Q Consensus 585 l~-~~-~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~~---~L~~L~l~~n~~~~~~~~~~~~~~~~L~-~L~L~~n 655 (967)
-+ .. .+. ....+.+.+.|++++-+++....+.|... -....+++.|++. ++|. .+..++.++ .+++++|
T Consensus 345 e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk-~L~~lkelvT~l~lsnn 422 (565)
T KOG0472|consen 345 ETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPK-RLVELKELVTDLVLSNN 422 (565)
T ss_pred cccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhh-hhHHHHHHHHHHHhhcC
Confidence 00 00 011 11234455666666666653322333322 2556666666664 4554 333343333 4566666
Q ss_pred cCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccc
Q 002101 656 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTS 735 (967)
Q Consensus 656 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (967)
.+. .+|..++.+++|..|+|++|.+. .+|..++.+..|+.||++.|+|. ..|.+....
T Consensus 423 ~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~l------------------- 480 (565)
T KOG0472|consen 423 KIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYEL------------------- 480 (565)
T ss_pred ccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhH-------------------
Confidence 665 78888999999999999999998 78999999999999999999876 344444331
Q ss_pred cccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCccccc
Q 002101 736 FSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS 815 (967)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 815 (967)
..++.+-.++|++....|+.+.++.+|..|||.+|.+. .+|..++
T Consensus 481 ----------------------------------q~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lg 525 (565)
T KOG0472|consen 481 ----------------------------------QTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILG 525 (565)
T ss_pred ----------------------------------HHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhc
Confidence 24566666779998777777999999999999999998 7888999
Q ss_pred CCCCCCEEECcCCcCc
Q 002101 816 NLRHIESLDLSYNKLS 831 (967)
Q Consensus 816 ~l~~L~~L~Ls~N~l~ 831 (967)
++++|++|++++|+++
T Consensus 526 nmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 526 NMTNLRHLELDGNPFR 541 (565)
T ss_pred cccceeEEEecCCccC
Confidence 9999999999999997
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=9.3e-34 Score=312.81 Aligned_cols=395 Identities=27% Similarity=0.329 Sum_probs=170.5
Q ss_pred CcEEEccCCccccccCchhccCCCCcEEecccCcccCCCCcccccCCCCCcEEEcccCCCCCCCCcccccCCCCccEEec
Q 002101 255 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDA 334 (967)
Q Consensus 255 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l 334 (967)
++.|+++.|.+....-+...+..+|+.||+++|++. ..|. .+..+.+|+.|.++.|-+.. .+ ....++.+|+++.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~n~i~~-vp-~s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSRNYIRS-VP-SSCSNMRNLQYLNL 98 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhcccchhhHhh-Cc-hhhhhhhcchhhee
Confidence 444555554433222222333334555555555544 4444 44455555555555554431 12 23334444444444
Q ss_pred cCCcccccccccCCCCCccceeEEEccCCCCCCCCcChhccCCCCccEEEccCCcCcccCchHHhhcCCCCcEEEccCCc
Q 002101 335 KNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDS 414 (967)
Q Consensus 335 s~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 414 (967)
.+|.+.. .|..+..+++|++|+++.|.+. .+|..+ ..++.++.+..++|.
T Consensus 99 ~~n~l~~----------------------------lP~~~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt~~~~~~~s~N~ 148 (1081)
T KOG0618|consen 99 KNNRLQS----------------------------LPASISELKNLQYLDLSFNHFG-PIPLVI-EVLTAEEELAASNNE 148 (1081)
T ss_pred ccchhhc----------------------------CchhHHhhhcccccccchhccC-CCchhH-HhhhHHHHHhhhcch
Confidence 4444332 2233333444444444444432 233322 234444444444441
Q ss_pred ccCcCCCCcCCCCCccEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccch
Q 002101 415 LAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPD 494 (967)
Q Consensus 415 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~ 494 (967)
...... . ..++.+++..|.+.+.++.++.. +.. .+++.+|.+. -..+..+.+|+.|....|++. .+..
T Consensus 149 ~~~~lg----~-~~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~~ 216 (1081)
T KOG0618|consen 149 KIQRLG----Q-TSIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELEI 216 (1081)
T ss_pred hhhhhc----c-ccchhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-eEEe
Confidence 111110 0 11444444445444444433322 111 3555555544 112334445555555555544 2211
Q ss_pred hHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCC
Q 002101 495 HLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG 574 (967)
Q Consensus 495 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 574 (967)
..++++.|+.++|.+....+. ..-.+|++++++.|+++ .+|.++..+.+|+.++..+|.+. .+|..+...++
T Consensus 217 ----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~ 288 (1081)
T KOG0618|consen 217 ----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITS 288 (1081)
T ss_pred ----cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhh
Confidence 134555555555555422211 11234555555555555 33455555555555555555553 44444555555
Q ss_pred CCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcC---CCcccEEEccCCcCcccCCcccccCCCCCcEEE
Q 002101 575 LQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY---PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLD 651 (967)
Q Consensus 575 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 651 (967)
|+.|.+..|.+. -+|....+.++|+.|||..|++. .+|..+. ..++..++.+.|++. ..|...=...+.|+.|.
T Consensus 289 L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~Ly 365 (1081)
T KOG0618|consen 289 LVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELY 365 (1081)
T ss_pred HHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHH
Confidence 555555555554 34444444555555555555554 2222111 112333333333332 11111112234455555
Q ss_pred CcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCc
Q 002101 652 LSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 706 (967)
Q Consensus 652 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 706 (967)
+.+|.++...-..+.++.+|+.|+|++|++.......+.++..|+.|+||+|+++
T Consensus 366 lanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 366 LANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred HhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh
Confidence 5555555444444455555555555555554333333444555555555555544
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=2.9e-32 Score=301.06 Aligned_cols=419 Identities=27% Similarity=0.351 Sum_probs=241.0
Q ss_pred cceecccccccccccchhhhhhcccCcccEEecCCCCCCCCCCcccccCCCCCCCCcEEEccCCccccccCchhccCCCC
Q 002101 200 LEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSL 279 (967)
Q Consensus 200 L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 279 (967)
+..|++ ..|.+...-.+.+.+ .-+|+.|++++|.+.. .| ..+..+++|+.|+++.|.+. ..|....++.+|
T Consensus 23 ~~~ln~--~~N~~l~~pl~~~~~-~v~L~~l~lsnn~~~~----fp-~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l 93 (1081)
T KOG0618|consen 23 LQILNL--RRNSLLSRPLEFVEK-RVKLKSLDLSNNQISS----FP-IQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNL 93 (1081)
T ss_pred HHhhhc--cccccccCchHHhhh-eeeeEEeecccccccc----CC-chhhhHHHHhhcccchhhHh-hCchhhhhhhcc
Confidence 566666 444332211233333 5568888888888764 33 25667788888888888776 456777788888
Q ss_pred cEEecccCcccCCCCcccccCCCCCcEEEcccCCCCCCCCcccccCCCCccEEeccCCcccccccccCCCCCccceeEEE
Q 002101 280 RILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLS 359 (967)
Q Consensus 280 ~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~ 359 (967)
+++.|.+|++. .+|. .+..+.+|++|++++|++. .+|. .+..+..+..++.++|..
T Consensus 94 ~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~-------------------- 149 (1081)
T KOG0618|consen 94 QYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNNEK-------------------- 149 (1081)
T ss_pred hhheeccchhh-cCch-hHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcchh--------------------
Confidence 88888888876 7777 7888888888888888876 2332 223334444444444410
Q ss_pred ccCCCCCCCCcChhccCCCCccEEEccCCcCcccCchHHhhcCCCCcEEEccCCcccCcCCCCcCCCCCccEEEecCCcC
Q 002101 360 LSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNF 439 (967)
Q Consensus 360 Ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 439 (967)
...++ . ..++.+++..+.+.+.++... ..++. .|+|+.|.+. ......+.+|+.+....|++
T Consensus 150 -------~~~lg----~-~~ik~~~l~~n~l~~~~~~~i-~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~l 211 (1081)
T KOG0618|consen 150 -------IQRLG----Q-TSIKKLDLRLNVLGGSFLIDI-YNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQL 211 (1081)
T ss_pred -------hhhhc----c-ccchhhhhhhhhcccchhcch-hhhhe--eeecccchhh---hhhhhhccchhhhhhhhccc
Confidence 00000 0 114555666666666665443 23333 4777777765 23344566677777776666
Q ss_pred CcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccc
Q 002101 440 QGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFS 519 (967)
Q Consensus 440 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 519 (967)
.. +.. .-++++.|+.++|.++...+.. --.+|+++++++|+++ .+|.++. .+.+|+.++..+|.+. .+|.
T Consensus 212 s~-l~~----~g~~l~~L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~-~~~nle~l~~n~N~l~-~lp~ 281 (1081)
T KOG0618|consen 212 SE-LEI----SGPSLTALYADHNPLTTLDVHP--VPLNLQYLDISHNNLS-NLPEWIG-ACANLEALNANHNRLV-ALPL 281 (1081)
T ss_pred ce-EEe----cCcchheeeeccCcceeecccc--ccccceeeecchhhhh-cchHHHH-hcccceEecccchhHH-hhHH
Confidence 52 111 1257777777777776332221 2346777777777777 6774444 3777777777777774 5666
Q ss_pred cccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccc-cCCC-CCCEEECCCCccccCCCccccCCC
Q 002101 520 RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWL-GNLK-GLQHIVMPKNHLEGPIPVEFCRLD 597 (967)
Q Consensus 520 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~-~L~~L~l~~n~l~~~~~~~~~~l~ 597 (967)
.+....+|+.|+...|.+. .+|....+.++|++|+|..|++. ..|+.+ .-.. .|+.|..+.|.+.......=....
T Consensus 282 ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~ 359 (1081)
T KOG0618|consen 282 RISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHA 359 (1081)
T ss_pred HHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhH
Confidence 6666777777777777776 45555666677777777777765 344322 2222 244455555544322111111233
Q ss_pred CCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcC
Q 002101 598 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 677 (967)
Q Consensus 598 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 677 (967)
.|+.|++.+|.++...-+ .+.+.++|+.|+|++|++.......+.+++.|+.|+|+
T Consensus 360 -----------------------~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LS 415 (1081)
T KOG0618|consen 360 -----------------------ALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLS 415 (1081)
T ss_pred -----------------------HHHHHHHhcCcccccchh-hhccccceeeeeecccccccCCHHHHhchHHhHHHhcc
Confidence 444445555544444333 45555556666666665553333444555556666666
Q ss_pred CCcCcccCChhccCCCCCCEEECCCCcCc
Q 002101 678 HNNLEGEVPIQLCRLNQLQLLDLSDNNLH 706 (967)
Q Consensus 678 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 706 (967)
+|+++ .+|..+..++.|++|...+|.+.
T Consensus 416 GNkL~-~Lp~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 416 GNKLT-TLPDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred cchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence 66655 45555555555555555555543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=7.7e-32 Score=283.48 Aligned_cols=384 Identities=27% Similarity=0.365 Sum_probs=241.2
Q ss_pred eeEEEccCCCCCCCCcChhccCCCCccEEEccCCcCcccCchHHhhcCCCCcEEEccCCcccCcCCCCcCCCCCccEEEe
Q 002101 355 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDV 434 (967)
Q Consensus 355 L~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 434 (967)
.+..++++|....+.+|.....++.++.|.+.+.++. .+|..+ +.+.+|++|.+++|++... ...+..++.|+.+.+
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIV 85 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhh
Confidence 5566666776666788888888888898888887754 677775 6788888888888887643 344566777777777
Q ss_pred cCCcCCc-CCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccc
Q 002101 435 SNNNFQG-HIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSL 513 (967)
Q Consensus 435 ~~n~l~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l 513 (967)
..|++.. -||..++. +..|..|+|++|+++ ..|..+..-+++-+|+||+|+|. +||..+|.+++.|-+|||++|++
T Consensus 86 R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchh
Confidence 7777642 36777765 667777777777777 66666777777777777777776 77777777677777777777777
Q ss_pred cccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCC-CCCCccccCCCCCCEEECCCCccccCCCcc
Q 002101 514 KGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS-GKIPRWLGNLKGLQHIVMPKNHLEGPIPVE 592 (967)
Q Consensus 514 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 592 (967)
. ..|.....+..|++|+|++|.+.-.--..+..+++|++|.+++.+-+ ..+|..+..+.+|..+|++.|.+. ..|++
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 6 44555566666666666666654222223334445555555544322 124444444444444444444443 34444
Q ss_pred ccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCC
Q 002101 593 FCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS 672 (967)
Q Consensus 593 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 672 (967)
+-++++|+.|+||+|.+ + .+.-..+...+|+
T Consensus 241 ly~l~~LrrLNLS~N~i------------------------------------------------t-eL~~~~~~W~~lE 271 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKI------------------------------------------------T-ELNMTEGEWENLE 271 (1255)
T ss_pred HhhhhhhheeccCcCce------------------------------------------------e-eeeccHHHHhhhh
Confidence 44444444444444444 3 1122223334455
Q ss_pred EEEcCCCcCcccCChhccCCCCCCEEECCCCcCcc-cCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhhe
Q 002101 673 HLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHG-LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILE 751 (967)
Q Consensus 673 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (967)
+|+|+.|+++ ..|++++.++.|+.|...+|+++- -+|..++.
T Consensus 272 tLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK------------------------------------ 314 (1255)
T KOG0444|consen 272 TLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK------------------------------------ 314 (1255)
T ss_pred hhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhh------------------------------------
Confidence 5555555555 455555555555555555555431 12333322
Q ss_pred eeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCc
Q 002101 752 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 831 (967)
Q Consensus 752 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 831 (967)
+..|+.+..++|++. ..|+.+..+..|+.|.|++|++- ..|+++.-++.|+.||+..|.-.
T Consensus 315 -----------------L~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 315 -----------------LIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred -----------------hhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 235666667777776 78888999999999999999987 67888888999999999999766
Q ss_pred ccCCccccCCCcCCeEecCC
Q 002101 832 GKIPRQLVDLNTLAIFIVAY 851 (967)
Q Consensus 832 ~~~p~~l~~l~~L~~l~ls~ 851 (967)
...|..-..-++++..++..
T Consensus 376 VMPPKP~da~~~lefYNIDF 395 (1255)
T KOG0444|consen 376 VMPPKPNDARKKLEFYNIDF 395 (1255)
T ss_pred cCCCCcchhhhcceeeecce
Confidence 44443222335666655543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.3e-32 Score=286.20 Aligned_cols=365 Identities=23% Similarity=0.325 Sum_probs=256.4
Q ss_pred EEccCCccc-CcCCCCcCCCCCccEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCC
Q 002101 408 LYLVNDSLA-GPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 486 (967)
Q Consensus 408 L~L~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 486 (967)
+++++|.++ +..|.....+++++.|.+...++. .+|.++.. +.+|++|.+++|++. .+-+.+..++.|+.+++.+|
T Consensus 12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDN 88 (1255)
T ss_pred ccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhcc
Confidence 344444444 223333445556666666666665 56666655 566777777777666 33445566666777777776
Q ss_pred cCCC-ccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCC
Q 002101 487 KLTG-EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 565 (967)
Q Consensus 487 ~l~~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 565 (967)
++.. -||..+|. +..|+.|||++|++. ..|..+....++-+|+|++|+|.++...-|.+++.|-.||||+|++. ..
T Consensus 89 ~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~L 165 (1255)
T KOG0444|consen 89 NLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-ML 165 (1255)
T ss_pred ccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hc
Confidence 6642 36666664 666666777766666 45566666666666666666666332234456666666666666665 45
Q ss_pred CccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCC
Q 002101 566 PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCS 645 (967)
Q Consensus 566 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 645 (967)
|..+..+..|++|+|++|.+....-..+-.+++|+.|.+++.+-+ ...+|. ++..+.
T Consensus 166 PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT----------------------l~N~Pt-sld~l~ 222 (1255)
T KOG0444|consen 166 PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT----------------------LDNIPT-SLDDLH 222 (1255)
T ss_pred CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch----------------------hhcCCC-chhhhh
Confidence 555666666666666666554322223334445555555544332 124555 778889
Q ss_pred CCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCC
Q 002101 646 SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNN 725 (967)
Q Consensus 646 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 725 (967)
+|..+|+|.|.+. ..|+.+-.+++|+.|+|++|+|+ ...-......+|++|++|.|+++ ..|+++-.
T Consensus 223 NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK---------- 289 (1255)
T KOG0444|consen 223 NLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK---------- 289 (1255)
T ss_pred hhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh----------
Confidence 9999999999998 88999999999999999999998 45555667789999999999987 44555544
Q ss_pred CCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCC-CcccccCCCCCCEEECcCc
Q 002101 726 SSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH-IPPQIGNLTRIQTLNLSHN 804 (967)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N 804 (967)
++.|+.|.+.+|+++-+ +|..++.+..|+++..++|
T Consensus 290 -------------------------------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 290 -------------------------------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN 326 (1255)
T ss_pred -------------------------------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc
Confidence 44789999999998744 8999999999999999999
Q ss_pred cccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCC
Q 002101 805 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 859 (967)
Q Consensus 805 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 859 (967)
.+. ..|+.+..+..|+.|.|++|++. .+|+++.-++-|+.||+..|+=-.-.|
T Consensus 327 ~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 327 KLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 998 88999999999999999999998 899999999999999999997333333
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=8.1e-27 Score=234.20 Aligned_cols=134 Identities=22% Similarity=0.205 Sum_probs=114.8
Q ss_pred CCCccEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccC-CcCCCccchhHhhcCCCCc
Q 002101 426 HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN-NKLTGEIPDHLAMCCVNLE 504 (967)
Q Consensus 426 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~i~~~~~~~l~~L~ 504 (967)
.+..+.++|..|+|+ .+|...|..+++|+.|+|++|.|+.+-|++|.++++|..|.+.+ |+|+ .+|+..|.++..++
T Consensus 66 P~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 66 PPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQ 143 (498)
T ss_pred CCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHH
Confidence 456678888888888 78888888889999999999999988899999998888776666 8888 89999999899999
Q ss_pred EEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcC
Q 002101 505 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL 561 (967)
Q Consensus 505 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 561 (967)
.|.+.-|++.....+.|..+++|..|.+.+|.+..+-..+|..+.+++++.+..|.+
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence 999999999888888899999999999999998855555888888999998888874
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=9.9e-23 Score=255.15 Aligned_cols=339 Identities=22% Similarity=0.259 Sum_probs=210.6
Q ss_pred cCCCCCccEEEecCCc------CCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhH
Q 002101 423 IHSHKRLRFLDVSNNN------FQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHL 496 (967)
Q Consensus 423 ~~~~~~L~~L~l~~n~------l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~ 496 (967)
|..+++|+.|.+..+. +...+|..+....++|+.|.+.++.+. .+|..| ...+|++|++++|++. .++..+
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~ 630 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV 630 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc
Confidence 4445555555554332 112234433332345666666666655 445444 3456666666666665 555443
Q ss_pred hhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCC
Q 002101 497 AMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQ 576 (967)
Q Consensus 497 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 576 (967)
. .+++|+.|+++++...+.+|. +..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+
T Consensus 631 ~-~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~ 707 (1153)
T PLN03210 631 H-SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY 707 (1153)
T ss_pred c-cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence 2 366666666666544334442 5556666666666666555666666666666666666665444555544 566666
Q ss_pred EEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcc------cCCcccccCCCCCcEE
Q 002101 577 HIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG------QLKEGTFFNCSSLVTL 650 (967)
Q Consensus 577 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~------~~~~~~~~~~~~L~~L 650 (967)
.|++++|...+..|.. .++|+.|++++|.+. .+|..+.+++|++|.+.++.... .++...+..+++|+.|
T Consensus 708 ~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L 783 (1153)
T PLN03210 708 RLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL 783 (1153)
T ss_pred EEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchhe
Confidence 6666666443344432 345666677766654 45555555666666665532210 1111123345788888
Q ss_pred ECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCC
Q 002101 651 DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDK 730 (967)
Q Consensus 651 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (967)
+|++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..
T Consensus 784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~------------------ 844 (1153)
T PLN03210 784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI------------------ 844 (1153)
T ss_pred eCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc------------------
Confidence 888887777788888888888888888876555677655 6888888888887543332221
Q ss_pred CcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccC
Q 002101 731 PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI 810 (967)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 810 (967)
.++++.|+|++|.++ .+|..+..+++|+.|+|++|+--..+
T Consensus 845 --------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 845 --------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred --------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCcc
Confidence 236888888888887 67888888888888888885433457
Q ss_pred cccccCCCCCCEEECcCCc
Q 002101 811 PLTFSNLRHIESLDLSYNK 829 (967)
Q Consensus 811 p~~~~~l~~L~~L~Ls~N~ 829 (967)
|..+..+++|+.+++++|.
T Consensus 886 ~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 886 SLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CcccccccCCCeeecCCCc
Confidence 7778888888888888885
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=5.4e-26 Score=228.34 Aligned_cols=409 Identities=22% Similarity=0.233 Sum_probs=274.9
Q ss_pred EEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEccc-
Q 002101 432 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN- 510 (967)
Q Consensus 432 L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~- 510 (967)
++-++-.++ ++|.++ .+....++|..|.|+.+.+.+|+.+++|+.|||++|.|+ .|....|.+++++..|-+.+
T Consensus 51 VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred EEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcC
Confidence 344444455 677665 358899999999999888899999999999999999999 88888888999988887777
Q ss_pred ccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccc----
Q 002101 511 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE---- 586 (967)
Q Consensus 511 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---- 586 (967)
|+|+......|.++..|+.|.+.-|++.-..+..|..++++..|.+.+|.+..+.-..|..+..++.+.+..|.+.
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 8999888889999999999999999999888889999999999999999998444448889999999999888732
Q ss_pred --------cCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCC--cccEEEccCCcCcccCCcccccCCCCCcEEECcCcc
Q 002101 587 --------GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL--SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 656 (967)
Q Consensus 587 --------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~ 656 (967)
...|..++...-..-..+.+.++...-+..|... ++.+-..+.+...+..|...|..+++|+.|+|++|+
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 2223344444444444444555543333333322 222223334445566777789999999999999999
Q ss_pred CCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCC-----
Q 002101 657 LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKP----- 731 (967)
Q Consensus 657 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~----- 731 (967)
++++-+.||.+...++.|.|..|++.......|.++..|++|+|.+|+|+...|..|........++....+...
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA 365 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence 999999999999999999999999987777789999999999999999999999998876644444433322111
Q ss_pred -cccccccCC--------CCCchhhhhheeeeee---ccccccc---cch---hhhccc-ceEECCCCcccCCCcccccC
Q 002101 732 -FKTSFSISG--------PQGSVEKKILEIFEFT---TKNIAYA---YQG---RVLSLL-AGLDLSCNKLVGHIPPQIGN 792 (967)
Q Consensus 732 -~~~~~~~~~--------~~~~~~~~~~~~~~~~---~~~~~~~---~~~---~~l~~L-~~L~Ls~n~l~~~~p~~~~~ 792 (967)
+..++.... .++.+.......+.+. ..+-+.. ... ...+-+ +..--|+..+. .+|..+.
T Consensus 366 wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP- 443 (498)
T KOG4237|consen 366 WLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP- 443 (498)
T ss_pred HHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC-
Confidence 111111111 1122111111111111 0000000 000 000011 11112222222 3333332
Q ss_pred CCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCC
Q 002101 793 LTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 852 (967)
Q Consensus 793 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 852 (967)
..-.+|++.+|.++ .+|.. .+.+| .+|+|+|+++..--..|.+++.|.+|-+|+|
T Consensus 444 -~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 444 -VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred -chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 23456777777777 44544 45666 7777777777666667777777777777765
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=4.4e-22 Score=249.29 Aligned_cols=342 Identities=21% Similarity=0.258 Sum_probs=274.2
Q ss_pred CChhhhhcCCCCcEEECcCCCC------CCCCcccccCC-CCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccc
Q 002101 443 IPVEIGDILPSLVYFNISMNAL------DGSIPSSFGNV-IFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG 515 (967)
Q Consensus 443 ~~~~~~~~~~~L~~L~l~~n~l------~~~~~~~~~~l-~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~ 515 (967)
+....+..+++|+.|.+..+.. ...+|..|..+ .+|+.|++.++.+. .+|..+ .+.+|+.|++.+|.+.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-
Confidence 4556666789999999976642 33466667666 46999999999997 888876 3789999999999987
Q ss_pred cccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccC
Q 002101 516 HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 595 (967)
Q Consensus 516 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 595 (967)
.++..+..+++|+.|+++++...+.+|. +..+++|++|++++|.....+|..++++++|+.|++++|...+.+|..+ +
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 5677788899999999999876667774 7889999999999998777899999999999999999986555667655 7
Q ss_pred CCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCC-------CCcchhhhCC
Q 002101 596 LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN-------GSIPDWIDGL 668 (967)
Q Consensus 596 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~~~~~~~l 668 (967)
+++|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|. .+ .+++|+.|++.++... ...+..+...
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~-~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPS-NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccc-cc-cccccccccccccchhhccccccccchhhhhcc
Confidence 899999999999877666653 468999999999875 5564 22 5788898988875422 1222233445
Q ss_pred CCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhh
Q 002101 669 SQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKK 748 (967)
Q Consensus 669 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (967)
++|+.|++++|...+.+|..++++++|+.|++++|...+.+|... +
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~--------------------------------- 823 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N--------------------------------- 823 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C---------------------------------
Confidence 789999999998888899999999999999999986555555433 1
Q ss_pred hheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCC
Q 002101 749 ILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 828 (967)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 828 (967)
+++|+.|++++|.....+|.. .++|+.|+|++|.++ .+|..+..+++|+.|++++|
T Consensus 824 --------------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 824 --------------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred --------------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence 348999999998766566654 368999999999998 67889999999999999996
Q ss_pred cCcccCCccccCCCcCCeEecCCCc
Q 002101 829 KLSGKIPRQLVDLNTLAIFIVAYNN 853 (967)
Q Consensus 829 ~l~~~~p~~l~~l~~L~~l~ls~N~ 853 (967)
+-...+|..+..+++|+.+++++|.
T Consensus 880 ~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 880 NNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCcCccCcccccccCCCeeecCCCc
Confidence 5555788888999999999999985
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=8.4e-21 Score=219.11 Aligned_cols=264 Identities=27% Similarity=0.336 Sum_probs=131.2
Q ss_pred CCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceec
Q 002101 453 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 532 (967)
Q Consensus 453 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 532 (967)
.-..|+++.+.++ .+|..+. ++|+.|++++|+++ .+|.. +++|++|++++|+++. +|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l----p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLTS-LPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC----CCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence 4556777777776 4555553 36777777777776 56542 4566666666666653 2321 245555555
Q ss_pred cCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcC
Q 002101 533 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS 612 (967)
Q Consensus 533 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 612 (967)
++|.+. .+|.. ..+|+.|++++|+++ .+|.. .++|+.|++++|++.+. |..
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~L-p~l-------------------- 320 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASL-PAL-------------------- 320 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCccccC-CCC--------------------
Confidence 555554 22221 133445555555554 22321 23444444444444421 211
Q ss_pred CCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCC
Q 002101 613 LPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL 692 (967)
Q Consensus 613 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 692 (967)
+.+|+.|++++|.+. .+|. ...+|+.|+|++|++++ +|.. ..+|+.|++++|++.+ +|.. .
T Consensus 321 ------p~~L~~L~Ls~N~L~-~LP~----lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~ 381 (788)
T PRK15387 321 ------PSELCKLWAYNNQLT-SLPT----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---P 381 (788)
T ss_pred ------cccccccccccCccc-cccc----cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---c
Confidence 122333333333332 1221 01356666666666653 3322 2345556666666652 4432 2
Q ss_pred CCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhccc
Q 002101 693 NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 772 (967)
Q Consensus 693 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 772 (967)
.+|+.|++++|++++. |.. .+.|
T Consensus 382 ~~L~~LdLs~N~Lt~L-P~l--------------------------------------------------------~s~L 404 (788)
T PRK15387 382 SGLKELIVSGNRLTSL-PVL--------------------------------------------------------PSEL 404 (788)
T ss_pred cccceEEecCCcccCC-CCc--------------------------------------------------------ccCC
Confidence 3456666666655532 111 1145
Q ss_pred ceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccc
Q 002101 773 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL 838 (967)
Q Consensus 773 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 838 (967)
+.|++++|.+++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..|..+
T Consensus 405 ~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 405 KELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 556666666653 4432 234555666666665 455555566666666666666665555544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=3.7e-20 Score=213.86 Aligned_cols=268 Identities=27% Similarity=0.332 Sum_probs=201.3
Q ss_pred CCccEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEE
Q 002101 427 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL 506 (967)
Q Consensus 427 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L 506 (967)
..-..|+++.+.++ .+|..+. ++|+.|++.+|.++. +|. ..++|++|++++|+++ .+|.. .++|+.|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----cccccee
Confidence 34568999999998 7888764 489999999999994 554 2588999999999999 78753 5789999
Q ss_pred EcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccc
Q 002101 507 SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 586 (967)
Q Consensus 507 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 586 (967)
++++|.+.. +|.. ..+|+.|++++|+++ .+|. ..++|+.|++++|++++ +|... .+|+.|++++|+++
T Consensus 268 ~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 268 SIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLT 335 (788)
T ss_pred eccCCchhh-hhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCCc---ccccccccccCccc
Confidence 999999884 4432 357899999999998 4554 24689999999999985 55432 46888999999987
Q ss_pred cCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhh
Q 002101 587 GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWID 666 (967)
Q Consensus 587 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 666 (967)
+ +|.. ..+|+.|++++|++++ +|.. .++|+.|++++|.+.+ +|..
T Consensus 336 ~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---------------------------p~~L~~L~Ls~N~L~~-LP~l-- 380 (788)
T PRK15387 336 S-LPTL---PSGLQELSVSDNQLAS-LPTL---------------------------PSELYKLWAYNNRLTS-LPAL-- 380 (788)
T ss_pred c-cccc---ccccceEecCCCccCC-CCCC---------------------------Ccccceehhhcccccc-Cccc--
Confidence 5 4431 2478888888888873 3321 1345566667776663 4432
Q ss_pred CCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchh
Q 002101 667 GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVE 746 (967)
Q Consensus 667 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (967)
..+|+.|++++|++++ +|.. .++|+.|++++|+++++ |...
T Consensus 381 -~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssI-P~l~--------------------------------- 421 (788)
T PRK15387 381 -PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSL-PMLP--------------------------------- 421 (788)
T ss_pred -ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCC-Ccch---------------------------------
Confidence 2467788888888874 4432 35788899999988753 3211
Q ss_pred hhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCC
Q 002101 747 KKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 817 (967)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 817 (967)
..|+.|++++|+++ .+|..+.++++|+.|+|++|.+++..|..+..+
T Consensus 422 -----------------------~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 422 -----------------------SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred -----------------------hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 15778999999998 689899999999999999999999888877444
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=1.6e-18 Score=202.03 Aligned_cols=119 Identities=25% Similarity=0.361 Sum_probs=71.8
Q ss_pred CCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCcccccee
Q 002101 452 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLL 531 (967)
Q Consensus 452 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 531 (967)
.+...|+++++.++ .+|..+. +.|+.|++++|+++ .+|..++ .+|++|++++|+++. +|..+. ++|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEE
Confidence 35677888888777 4555442 46788888888887 6776653 477777777777763 344332 3566666
Q ss_pred ccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccc
Q 002101 532 LEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 586 (967)
Q Consensus 532 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 586 (967)
+++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence 6666665 4444432 35666666666655 3444332 35555555555554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=6.3e-18 Score=197.15 Aligned_cols=244 Identities=25% Similarity=0.363 Sum_probs=117.4
Q ss_pred cEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcc
Q 002101 430 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS 509 (967)
Q Consensus 430 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~ 509 (967)
+.|+++++.++ .+|..+. +.++.|++++|.++ .+|..+. ++|++|++++|+++ .+|..+ ..+|+.|+++
T Consensus 181 ~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~Ls 249 (754)
T PRK15370 181 TELRLKILGLT-TIPACIP---EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL---PDTIQEMELS 249 (754)
T ss_pred eEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh---hccccEEECc
Confidence 34444444444 3443321 34555555555555 2333222 34555555555555 455433 2345555555
Q ss_pred cccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCC
Q 002101 510 NNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI 589 (967)
Q Consensus 510 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 589 (967)
+|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++. +
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence 55555 3333332 34556666666555 3444332 356666666666652 343332 356666666666653 3
Q ss_pred CccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCC
Q 002101 590 PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLS 669 (967)
Q Consensus 590 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 669 (967)
|..+ .++|+.|++++|.+++ +|..+ +++|+.|++++|++. .+|. .+ .++|+.|+|++|+++ .+|..+. .
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l-~~sL~~L~Ls~N~L~-~LP~-~l--p~~L~~LdLs~N~Lt-~LP~~l~--~ 388 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTS-LPASL-PPELQVLDVSKNQIT-VLPE-TL--PPTITTLDVSRNALT-NLPENLP--A 388 (754)
T ss_pred Cccc--cccceeccccCCcccc-CChhh-cCcccEEECCCCCCC-cCCh-hh--cCCcCEEECCCCcCC-CCCHhHH--H
Confidence 3222 2456666666666553 33221 234444444444443 2332 11 245666666666665 2343332 2
Q ss_pred CCCEEEcCCCcCcccCChh----ccCCCCCCEEECCCCcCc
Q 002101 670 QLSHLNLAHNNLEGEVPIQ----LCRLNQLQLLDLSDNNLH 706 (967)
Q Consensus 670 ~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~ 706 (967)
+|+.|++++|++. .+|.. +..++.+..|++.+|+++
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 4555666666655 33332 223355556666666554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=1.3e-18 Score=190.02 Aligned_cols=66 Identities=29% Similarity=0.403 Sum_probs=33.3
Q ss_pred ccCCCCCcEEECcCccCCCC----cchhhhCCCCCCEEEcCCCcCcccC----ChhccCCCCCCEEECCCCcCc
Q 002101 641 FFNCSSLVTLDLSYNYLNGS----IPDWIDGLSQLSHLNLAHNNLEGEV----PIQLCRLNQLQLLDLSDNNLH 706 (967)
Q Consensus 641 ~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~ 706 (967)
+..+++|+.|++++|.+++. ++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|+++
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 34445566666666655532 1222334456666666666554221 223444555666666666544
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=8.7e-19 Score=191.51 Aligned_cols=239 Identities=25% Similarity=0.258 Sum_probs=133.6
Q ss_pred CCCCCcEEECcCCcCCC------CCCccccCCCCCCEEECCCCccccCCCccccCCCC---CCEEeCcCCcCCcCCCCCc
Q 002101 547 KCSSLKGLYLNNNNLSG------KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS---LQILDISDNNISGSLPSCF 617 (967)
Q Consensus 547 ~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~~~~~~~ 617 (967)
..+.+++++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..+.. |+.|++++|++.+...
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~--- 125 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL--- 125 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH---
Confidence 34445555555544431 12233444556666666665554433333333333 6666666665542100
Q ss_pred CCCcccEEEccCCcCcccCCcccccCC-CCCcEEECcCccCCCC----cchhhhCCCCCCEEEcCCCcCccc----CChh
Q 002101 618 YPLSIKQVHLSKNMLHGQLKEGTFFNC-SSLVTLDLSYNYLNGS----IPDWIDGLSQLSHLNLAHNNLEGE----VPIQ 688 (967)
Q Consensus 618 ~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~ 688 (967)
..+.. .+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+++. ++..
T Consensus 126 ----------------~~l~~-~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 126 ----------------RLLAK-GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred ----------------HHHHH-HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 01111 33444 7788888888887743 334566677888888888888743 2334
Q ss_pred ccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhh
Q 002101 689 LCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRV 768 (967)
Q Consensus 689 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (967)
+..+++|++|++++|.+++.....+.... ..
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~-------------------------------------------------~~ 219 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETL-------------------------------------------------AS 219 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHh-------------------------------------------------cc
Confidence 55667888888888877643222211100 11
Q ss_pred hcccceEECCCCcccCCCccccc-----CCCCCCEEECcCccccc----cCcccccCCCCCCEEECcCCcCccc----CC
Q 002101 769 LSLLAGLDLSCNKLVGHIPPQIG-----NLTRIQTLNLSHNNLTG----TIPLTFSNLRHIESLDLSYNKLSGK----IP 835 (967)
Q Consensus 769 l~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p 835 (967)
++.|++|++++|.+++.....+. ..+.|+.|++++|.++. .++..+..+++|+.+|+++|.++.. ..
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence 34677888888877653222221 23677788888777762 2334555567777777777777743 33
Q ss_pred ccccCC-CcCCeEecCCCcC
Q 002101 836 RQLVDL-NTLAIFIVAYNNL 854 (967)
Q Consensus 836 ~~l~~l-~~L~~l~ls~N~l 854 (967)
..+... +.++.+++.+|++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 300 ESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHhhcCCchhhcccCCCCC
Confidence 344444 5667777766653
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=9e-18 Score=149.65 Aligned_cols=185 Identities=29% Similarity=0.454 Sum_probs=141.3
Q ss_pred CCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCC
Q 002101 615 SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQ 694 (967)
Q Consensus 615 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 694 (967)
..|.+..++.|.+++|+++ .+|+ .++.+.+|+.|++++|++. ..|..++.+++|+.|+++-|++. ..|..|+.+|.
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA 103 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence 3334445555555555554 3344 5778889999999999998 67888999999999999999987 78999999999
Q ss_pred CCEEECCCCcCccc-CCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccc
Q 002101 695 LQLLDLSDNNLHGL-IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 773 (967)
Q Consensus 695 L~~L~Ls~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 773 (967)
|++|||++|++... .|.-|.. ++.|+
T Consensus 104 levldltynnl~e~~lpgnff~-----------------------------------------------------m~tlr 130 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFY-----------------------------------------------------MTTLR 130 (264)
T ss_pred hhhhhccccccccccCCcchhH-----------------------------------------------------HHHHH
Confidence 99999999987643 3443332 34788
Q ss_pred eEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCC---cCCeEecC
Q 002101 774 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN---TLAIFIVA 850 (967)
Q Consensus 774 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~l~ls 850 (967)
.|+|+.|.+. .+|..++.+++|+.|.+..|.+- ..|..++.++.|++|++.+|+++ .+|+.++.+. +=+++.+.
T Consensus 131 alyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E 207 (264)
T KOG0617|consen 131 ALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRME 207 (264)
T ss_pred HHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhh
Confidence 8899999998 78888999999999999999988 67889999999999999999998 6776766653 22445556
Q ss_pred CCcCccCCC
Q 002101 851 YNNLSGKIP 859 (967)
Q Consensus 851 ~N~l~~~~p 859 (967)
+|++..+|.
T Consensus 208 ~NPwv~pIa 216 (264)
T KOG0617|consen 208 ENPWVNPIA 216 (264)
T ss_pred hCCCCChHH
Confidence 666655554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=4e-17 Score=145.59 Aligned_cols=167 Identities=31% Similarity=0.494 Sum_probs=148.1
Q ss_pred ccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCccccccccc
Q 002101 641 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE 720 (967)
Q Consensus 641 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 720 (967)
+.++...+.|.||+|+++ .+|..+..+.+|+.|++.+|+++ ..|..++.++.|++|+++.|++. ..|..|+.+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~---- 101 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF---- 101 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC----
Confidence 556778899999999999 56777999999999999999998 78999999999999999999886 567777764
Q ss_pred ccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccC-CCcccccCCCCCCEE
Q 002101 721 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLTRIQTL 799 (967)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L 799 (967)
+.|+.|||..|++.. ..|..|..++.|+.|
T Consensus 102 -------------------------------------------------p~levldltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 102 -------------------------------------------------PALEVLDLTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred -------------------------------------------------chhhhhhccccccccccCCcchhHHHHHHHH
Confidence 379999999999974 478889999999999
Q ss_pred ECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCCCccccc
Q 002101 800 NLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFA 866 (967)
Q Consensus 800 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~ 866 (967)
+|++|.+. .+|..++++++|+.|.+..|.+. ..|..+..++.|+.|.+.+|.++...|+ .+++.
T Consensus 133 yl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~ 196 (264)
T KOG0617|consen 133 YLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLD 196 (264)
T ss_pred HhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhh
Confidence 99999998 78889999999999999999998 8999999999999999999999977766 34443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.53 E-value=1.7e-14 Score=168.61 Aligned_cols=118 Identities=36% Similarity=0.628 Sum_probs=106.6
Q ss_pred ccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecC
Q 002101 771 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 850 (967)
Q Consensus 771 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 850 (967)
.++.|+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCccCCCCCccc-ccccCcccccCCcCCCCCCCC-CCC
Q 002101 851 YNNLSGKIPEWTAQ-FATFNKSSYDGNPFLCGLPLP-ICR 888 (967)
Q Consensus 851 ~N~l~~~~p~~~~~-~~~~~~~~~~~n~~lc~~~l~-~c~ 888 (967)
+|+++|.+|..+.. +.......+.+|+++|+.|.. .|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999986543 234456688999999997643 664
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.27 E-value=4.4e-13 Score=134.52 Aligned_cols=258 Identities=22% Similarity=0.290 Sum_probs=143.5
Q ss_pred hhcCCCccEEECCCCccCcc----chhhhcCCCCCCEEECCCCcCCCCCChhhhcCCCCCCEEEcCCCCCCccccccCcc
Q 002101 18 LSRLSKLKKLDLRGNLCNNS----ILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYR 93 (967)
Q Consensus 18 l~~l~~L~~L~Ls~~~~~~~----~~~~l~~l~~L~~L~L~~~~i~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 93 (967)
+-.+..+++++||+|.+... +.+.+.+.+.|+.-++++-.. |.....+...|. .| . ..+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ft-GR~~~Ei~e~L~---~l----------~--~aL~ 89 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFT-GRLKDEIPEALK---ML----------S--KALL 89 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhc-CCcHHHHHHHHH---HH----------H--HHHh
Confidence 44567788888888877642 445566677777777776532 222211111111 00 1 2345
Q ss_pred CCCCccEEECCCCCCCCC--chhhhhcCCCCcccEEeccCCcccccccc-----------chhhcCCCCCcEEEcCCCCC
Q 002101 94 GLRKLKSLDLSGVGIRDG--NKLLQSMGSFPSLNTLHLESNNFTATLTT-----------TQELHNFTNLEYLTLDDSSL 160 (967)
Q Consensus 94 ~l~~L~~L~L~~~~l~~~--~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-----------~~~l~~l~~L~~L~L~~~~~ 160 (967)
.+++|++|+||+|-+... ..+.+.++.+++|++|+|.+|.+...... ......-++|+++..+.|.+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 555666666666655211 12233456667777777777766432210 11234456777777777766
Q ss_pred chhhhhhhhcccccchhhcccCcccccccCCCCCCCccccceecccccccccccc-h-hhhhhcccCcccEEecCCCCCC
Q 002101 161 HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTS-F-LQIIGESMPSLKYLSLSGSTLG 238 (967)
Q Consensus 161 ~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~-~~~~~~~l~~L~~L~L~~~~l~ 238 (967)
.......++. .+...+.|+.+.+..++....|. . ...+. .+++|+.|||.+|.++
T Consensus 170 en~ga~~~A~----------------------~~~~~~~leevr~~qN~I~~eG~~al~eal~-~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 170 ENGGATALAE----------------------AFQSHPTLEEVRLSQNGIRPEGVTALAEALE-HCPHLEVLDLRDNTFT 226 (382)
T ss_pred ccccHHHHHH----------------------HHHhccccceEEEecccccCchhHHHHHHHH-hCCcceeeecccchhh
Confidence 5443332222 23444566666664444444443 1 22333 3788888888888877
Q ss_pred CCCCcccccCCCCCCCCcEEEccCCccccccCchh-----ccCCCCcEEecccCcccCC---CCcccccCCCCCcEEEcc
Q 002101 239 TNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCL-----ANTTSLRILDVSFNQLTGS---ISSSPLVHLTSIEELRLS 310 (967)
Q Consensus 239 ~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~---i~~~~~~~l~~L~~L~L~ 310 (967)
.........+++.+++|+.|++++|.+......+| ...++|+.|.+.+|.++-. +-...+...+.|+.|+|+
T Consensus 227 ~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 227 LEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN 306 (382)
T ss_pred hHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence 65444445567777888888888887766544333 2356777777777766511 111123445666777777
Q ss_pred cCCC
Q 002101 311 NNHF 314 (967)
Q Consensus 311 ~n~l 314 (967)
+|++
T Consensus 307 gN~l 310 (382)
T KOG1909|consen 307 GNRL 310 (382)
T ss_pred cccc
Confidence 7766
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.24 E-value=2.6e-11 Score=141.99 Aligned_cols=114 Identities=32% Similarity=0.515 Sum_probs=101.9
Q ss_pred CCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccc
Q 002101 694 QLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 773 (967)
Q Consensus 694 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 773 (967)
.++.|+|++|.+.|.+|..+..++ +|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~-----------------------------------------------------~L~ 445 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLR-----------------------------------------------------HLQ 445 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCC-----------------------------------------------------CCC
Confidence 367889999999888887776643 899
Q ss_pred eEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCC-CcCCeEecCCC
Q 002101 774 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL-NTLAIFIVAYN 852 (967)
Q Consensus 774 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~l~ls~N 852 (967)
.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|+.++.+++|+.|||++|+++|.+|..+... ..+..+++++|
T Consensus 446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988764 56788999999
Q ss_pred cCccCCCC
Q 002101 853 NLSGKIPE 860 (967)
Q Consensus 853 ~l~~~~p~ 860 (967)
+..|.+|.
T Consensus 526 ~~lc~~p~ 533 (623)
T PLN03150 526 AGLCGIPG 533 (623)
T ss_pred ccccCCCC
Confidence 87776554
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.12 E-value=1.9e-11 Score=122.95 Aligned_cols=153 Identities=20% Similarity=0.260 Sum_probs=106.9
Q ss_pred hhhhcCCCccEEECCCCccCcc----ch-------hhhcCCCCCCEEECCCCcCCCCCC---hhhhcCCCCCCEEEcCCC
Q 002101 16 ERLSRLSKLKKLDLRGNLCNNS----IL-------SSVARLSSLTSLHLSHNILQGSID---AKEFDSLSNLEELDINDN 81 (967)
Q Consensus 16 ~~l~~l~~L~~L~Ls~~~~~~~----~~-------~~l~~l~~L~~L~L~~~~i~~~i~---~~~~~~l~~L~~L~Ls~n 81 (967)
+.+.+.+.||..++|+- ++|. +| +++-..++|++||||+|.+...-+ .+.++.++.|++|.|++|
T Consensus 52 ~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 52 KVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred HHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence 45888899999999986 3432 33 356677899999999998873322 234678899999999999
Q ss_pred CCCccccc------------cCccCCCCccEEECCCCCCCCCc--hhhhhcCCCCcccEEeccCCcccccc--ccchhhc
Q 002101 82 EIDNVEVS------------RGYRGLRKLKSLDLSGVGIRDGN--KLLQSMGSFPSLNTLHLESNNFTATL--TTTQELH 145 (967)
Q Consensus 82 ~i~~~~~~------------~~~~~l~~L~~L~L~~~~l~~~~--~~~~~l~~l~~L~~L~L~~n~~~~~~--~~~~~l~ 145 (967)
.+...... .....-++||++...+|++.+.+ .+...+...+.|+.+.++.|.+...- .....+.
T Consensus 131 Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~ 210 (382)
T KOG1909|consen 131 GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALE 210 (382)
T ss_pred CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHH
Confidence 87643221 22455678888888888886544 33455777788888888888774321 1234677
Q ss_pred CCCCCcEEEcCCCCCchhhhhhhh
Q 002101 146 NFTNLEYLTLDDSSLHISLLQSIG 169 (967)
Q Consensus 146 ~l~~L~~L~L~~~~~~~~~~~~l~ 169 (967)
.+++|++|++++|-++......++
T Consensus 211 ~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 211 HCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred hCCcceeeecccchhhhHHHHHHH
Confidence 788888888888877655444433
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=2e-10 Score=129.02 Aligned_cols=198 Identities=35% Similarity=0.506 Sum_probs=116.1
Q ss_pred EEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCC-CCCcEEECcCc
Q 002101 577 HIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC-SSLVTLDLSYN 655 (967)
Q Consensus 577 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~L~~n 655 (967)
.+++..|.+.. ....+...+.++.|++.+|.++...+ ..... ++|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~i~~-------------------------~~~~~~~nL~~L~l~~N 150 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITDIPP-------------------------LIGLLKSNLKELDLSDN 150 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccccCcc-------------------------ccccchhhccccccccc
Confidence 45555555532 22233344556666666666653222 22223 26666666666
Q ss_pred cCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccc
Q 002101 656 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTS 735 (967)
Q Consensus 656 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (967)
++. .+|..+..+++|+.|++++|++. .+|...+..++|+.|++++|++..+.+.. .
T Consensus 151 ~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~--------------------- 206 (394)
T COG4886 151 KIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEI-E--------------------- 206 (394)
T ss_pred chh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhh-h---------------------
Confidence 666 44455666677777777777776 44544446667777777777665433211 0
Q ss_pred cccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCccccc
Q 002101 736 FSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS 815 (967)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 815 (967)
.+..|+++++++|.+. .++..+..+..+..|.+++|++.. .+..++
T Consensus 207 --------------------------------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~ 252 (394)
T COG4886 207 --------------------------------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIG 252 (394)
T ss_pred --------------------------------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhc
Confidence 0124666777777433 355566677777777777777663 356666
Q ss_pred CCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccCCCC
Q 002101 816 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 860 (967)
Q Consensus 816 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 860 (967)
.+++++.|++++|.++. ++. +..+.+++.+++++|.++...|.
T Consensus 253 ~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 253 NLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccccceeccccccccc-ccc-ccccCccCEEeccCccccccchh
Confidence 67777777777777763 333 66667777777777777665554
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.08 E-value=3.7e-12 Score=135.48 Aligned_cols=176 Identities=33% Similarity=0.482 Sum_probs=146.1
Q ss_pred CCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEE
Q 002101 619 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLL 698 (967)
Q Consensus 619 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 698 (967)
+..-...+++.|++. .+|. .+..+..|+.+.|+.|.+. .+|..+.++..|.+++|+.|++. ..|..++.++ |+.|
T Consensus 74 ltdt~~aDlsrNR~~-elp~-~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPE-EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCch-HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 445566788888885 5565 5677788888889999888 77888999999999999999988 7788888775 8899
Q ss_pred ECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECC
Q 002101 699 DLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 778 (967)
Q Consensus 699 ~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 778 (967)
-+++|+++.. |..++. ...|..||.+
T Consensus 149 i~sNNkl~~l-p~~ig~-----------------------------------------------------~~tl~~ld~s 174 (722)
T KOG0532|consen 149 IVSNNKLTSL-PEEIGL-----------------------------------------------------LPTLAHLDVS 174 (722)
T ss_pred EEecCccccC-Cccccc-----------------------------------------------------chhHHHhhhh
Confidence 9999988743 333332 3478899999
Q ss_pred CCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCccC
Q 002101 779 CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGK 857 (967)
Q Consensus 779 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~ 857 (967)
.|.+. .+|..++++.+|+.|++..|++.. .|+.+..|+ |..||+|.|+++ .||..|..|..|++|-|.+|+|..+
T Consensus 175 ~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 175 KNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 99998 788899999999999999999995 556666665 899999999999 8999999999999999999999953
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=5e-11 Score=123.24 Aligned_cols=88 Identities=22% Similarity=0.263 Sum_probs=49.2
Q ss_pred cCcccEEecCCCCCCCCCCcccccCCCCCCCCcEEEccCCccccc-cCch-----hccCCCCcEEecccCcccCCCCc-c
Q 002101 224 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGS-LPWC-----LANTTSLRILDVSFNQLTGSISS-S 296 (967)
Q Consensus 224 l~~L~~L~L~~~~l~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~-----l~~l~~L~~L~L~~n~l~~~i~~-~ 296 (967)
+..|+.|||++|++.... .-...+.++.|+.|+++.|++... .|.. ...+++|++|++..|++. .++. .
T Consensus 245 ~~~L~~LdLs~N~li~~~---~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~ 320 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFD---QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLN 320 (505)
T ss_pred hhHHhhccccCCcccccc---cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccc
Confidence 446777777777665411 112455677777777777766543 2222 244567777777777663 2221 1
Q ss_pred cccCCCCCcEEEcccCCCC
Q 002101 297 PLVHLTSIEELRLSNNHFR 315 (967)
Q Consensus 297 ~~~~l~~L~~L~L~~n~l~ 315 (967)
.+..+++|+.|.+..|.+.
T Consensus 321 ~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 321 HLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhccchhhhhhccccccc
Confidence 2344556666666666655
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=8.5e-12 Score=132.75 Aligned_cols=175 Identities=30% Similarity=0.449 Sum_probs=148.8
Q ss_pred CCCCccEEEecCCcCCcCCChhhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCc
Q 002101 425 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE 504 (967)
Q Consensus 425 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~ 504 (967)
.+.--...|++.|.+. ++|..+.. |..|+.+.+..|.+. .+|.++.++..|++|||+.|+++ .+|..++. --|+
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~--lpLk 146 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD--LPLK 146 (722)
T ss_pred cccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc--Ccce
Confidence 3444557889999987 78888776 668899999999988 78888999999999999999998 88888863 4599
Q ss_pred EEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCc
Q 002101 505 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 584 (967)
Q Consensus 505 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 584 (967)
.|.+++|+++ .+|..++...+|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+. .-.|..||++.|+
T Consensus 147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNk 222 (722)
T KOG0532|consen 147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNK 222 (722)
T ss_pred eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCc
Confidence 9999999998 67788888899999999999988 66778889999999999999988 6777777 4468899999999
Q ss_pred cccCCCccccCCCCCCEEeCcCCcCC
Q 002101 585 LEGPIPVEFCRLDSLQILDISDNNIS 610 (967)
Q Consensus 585 l~~~~~~~~~~l~~L~~L~L~~n~l~ 610 (967)
+. .+|..|.+|+.|++|-|.+|.+.
T Consensus 223 is-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 223 IS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ee-ecchhhhhhhhheeeeeccCCCC
Confidence 97 78999999999999999999987
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=8.8e-11 Score=111.62 Aligned_cols=131 Identities=29% Similarity=0.455 Sum_probs=49.0
Q ss_pred hhcCCCccEEECCCCccCccchhhhc-CCCCCCEEECCCCcCCCCCChhhhcCCCCCCEEEcCCCCCCccccccCc-cCC
Q 002101 18 LSRLSKLKKLDLRGNLCNNSILSSVA-RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY-RGL 95 (967)
Q Consensus 18 l~~l~~L~~L~Ls~~~~~~~~~~~l~-~l~~L~~L~L~~~~i~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~l 95 (967)
.-+..++++|+|.+|.|.. .+.++ .+.+|+.|++++|.|. .++ .+..+++|++|++++|.|+++.. .+ ..+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~i~~--~l~~~l 87 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISSISE--GLDKNL 87 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S-CH--HHHHH-
T ss_pred ccccccccccccccccccc--ccchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCcccc--chHHhC
Confidence 3444567888888888765 34565 5778888888888888 454 36778888888888888887652 33 357
Q ss_pred CCccEEECCCCCCCCCchhhhhcCCCCcccEEeccCCccccccccc-hhhcCCCCCcEEEcC
Q 002101 96 RKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTT-QELHNFTNLEYLTLD 156 (967)
Q Consensus 96 ~~L~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~-~~l~~l~~L~~L~L~ 156 (967)
++|++|++++|++.+... ...++.+++|++|+|.+|.+....... ..+..+|+|+.||-.
T Consensus 88 p~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TT--EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 888888888888754333 455677888888888888876543211 246677888887744
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.01 E-value=5.7e-10 Score=125.38 Aligned_cols=182 Identities=36% Similarity=0.494 Sum_probs=126.3
Q ss_pred CCccEEEecCCcCCcCCChhhhhcC-CCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcE
Q 002101 427 KRLRFLDVSNNNFQGHIPVEIGDIL-PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF 505 (967)
Q Consensus 427 ~~L~~L~l~~n~l~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~ 505 (967)
+.++.+++.+|.++ .++..... . ++|+.|++++|.+. .+|..++.+++|+.|++++|+++ .+|.... ..++|+.
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~ 190 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNN 190 (394)
T ss_pred cceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhh-hhhhhhh
Confidence 55667777777766 45554443 3 27777788877777 44456677788888888888887 6666543 2677888
Q ss_pred EEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCcc
Q 002101 506 LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 585 (967)
Q Consensus 506 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 585 (967)
|++++|++. .+|........|++|.+++|.+. ..+..+.++..+..+.+.+|++. ..+..++.++++++|++++|++
T Consensus 191 L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 191 LDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred eeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccc
Confidence 888888877 44444444556888888888543 34556677777888888888776 3466777788888888888888
Q ss_pred ccCCCccccCCCCCCEEeCcCCcCCcCCCCCcC
Q 002101 586 EGPIPVEFCRLDSLQILDISDNNISGSLPSCFY 618 (967)
Q Consensus 586 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 618 (967)
+.... +..+.+++.|++++|.+....|....
T Consensus 268 ~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 268 SSISS--LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred ccccc--ccccCccCEEeccCccccccchhhhc
Confidence 74433 77788888888888888766555443
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.00 E-value=9.2e-11 Score=114.83 Aligned_cols=129 Identities=31% Similarity=0.334 Sum_probs=75.2
Q ss_pred CCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccC
Q 002101 644 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN 723 (967)
Q Consensus 644 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 723 (967)
...|+++|||+|.|+ .+.+.+.-.|.++.|+++.|.+... +.+..+++|+.||||+|.++......
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh----------- 348 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWH----------- 348 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhH-----------
Confidence 356777777777776 4455566667777777777777622 23666777777777777655322100
Q ss_pred CCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcC
Q 002101 724 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH 803 (967)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 803 (967)
..+.+.+.|.|++|.+. .-..++.+-+|..||+++
T Consensus 349 -------------------------------------------~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 349 -------------------------------------------LKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSS 383 (490)
T ss_pred -------------------------------------------hhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccc
Confidence 11335666666666664 223455566666666666
Q ss_pred ccccccCc-ccccCCCCCCEEECcCCcCc
Q 002101 804 NNLTGTIP-LTFSNLRHIESLDLSYNKLS 831 (967)
Q Consensus 804 N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~ 831 (967)
|+|..... ..+++++.|+.+.|.+|+++
T Consensus 384 N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 384 NQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred cchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 66653221 34555555555555555555
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=8.7e-11 Score=121.48 Aligned_cols=185 Identities=28% Similarity=0.310 Sum_probs=80.7
Q ss_pred cCCCCcEEEccCCcccCcCC-CCcCCCCCccEEEecCCcCCcCCC-hhhhhcCCCCcEEECcCCCCCCCCcccccCCCCC
Q 002101 401 NNTKLEFLYLVNDSLAGPFR-LPIHSHKRLRFLDVSNNNFQGHIP-VEIGDILPSLVYFNISMNALDGSIPSSFGNVIFL 478 (967)
Q Consensus 401 ~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 478 (967)
++.+|+++.|.++.+..... .....+++++.||+++|-+....+ ..+...+|+|+.|+++.|.+..-
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~----------- 187 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF----------- 187 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC-----------
Confidence 45556666666555543222 223345555566666555542211 12233455555555555554421
Q ss_pred CEEEccCCcCCCccchhHhhcCCCCcEEEccccccccc-ccccccCCccccceeccCccccccCCccCcCCCCCcEEECc
Q 002101 479 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH-IFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN 557 (967)
Q Consensus 479 ~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 557 (967)
........+++|+.|.++.|.++.. +......+|+|+.|+|.+|...........-+..|++|||+
T Consensus 188 -------------~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 188 -------------ISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS 254 (505)
T ss_pred -------------ccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence 1111111234444444444444321 11122334455555555543211211222233445555555
Q ss_pred CCcCCCCCC--ccccCCCCCCEEECCCCccccCC-Ccc-----ccCCCCCCEEeCcCCcCC
Q 002101 558 NNNLSGKIP--RWLGNLKGLQHIVMPKNHLEGPI-PVE-----FCRLDSLQILDISDNNIS 610 (967)
Q Consensus 558 ~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~-----~~~l~~L~~L~L~~n~l~ 610 (967)
+|++.. .+ ...+.++.|+.|.++.+.+..+- |+. ...+++|++|++..|++.
T Consensus 255 ~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 255 NNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred CCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 555542 22 23344555555555555544321 111 234556666666666654
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=3e-10 Score=111.33 Aligned_cols=133 Identities=24% Similarity=0.333 Sum_probs=86.8
Q ss_pred CCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEEE
Q 002101 547 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVH 626 (967)
Q Consensus 547 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ 626 (967)
....|+++||++|.|+ .+.++..-.+.++.|+++.|.+... ..++.+++|+.||||+|.++...
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~------------- 345 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECV------------- 345 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhh-------------
Confidence 3456777777777776 4555556667777777777777532 33667777777777777765221
Q ss_pred ccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccC-ChhccCCCCCCEEECCCCcC
Q 002101 627 LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV-PIQLCRLNQLQLLDLSDNNL 705 (967)
Q Consensus 627 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l 705 (967)
++-..+.+.+.|.|++|.+... ..+..+-+|..||+++|+|.... ...++++|.|+++.|.+|++
T Consensus 346 ------------Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 346 ------------GWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ------------hhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 1223445666677777766532 34566677778888888776332 34577888888888888887
Q ss_pred cccC
Q 002101 706 HGLI 709 (967)
Q Consensus 706 ~~~~ 709 (967)
.+.+
T Consensus 412 ~~~v 415 (490)
T KOG1259|consen 412 AGSV 415 (490)
T ss_pred cccc
Confidence 7553
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=1.4e-09 Score=103.35 Aligned_cols=122 Identities=29% Similarity=0.397 Sum_probs=59.2
Q ss_pred ccccccccchhhhh-cCCCccEEECCCCccCccchhhhcCCCCCCEEECCCCcCCCCCChhhhcCCCCCCEEEcCCCCCC
Q 002101 6 IDNLVVPQGLERLS-RLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 84 (967)
Q Consensus 6 ~~~~~~~~~l~~l~-~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~i~~~~~~~l~~L~~L~Ls~n~i~ 84 (967)
+.|-.++. ++.+. .+.+|+.|||++|.+.. .+.+..+++|++|++++|+|+ .++......+++|++|++++|+|.
T Consensus 26 L~~n~I~~-Ie~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 26 LRGNQIST-IENLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp -----------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---
T ss_pred cccccccc-ccchhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCC
Confidence 33434442 23454 57899999999999986 356888999999999999999 676544457999999999999998
Q ss_pred ccccccCccCCCCccEEECCCCCCCCCchhhh-hcCCCCcccEEeccC
Q 002101 85 NVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLES 131 (967)
Q Consensus 85 ~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~ 131 (967)
+...-..++.+++|++|++.+|.+.+...... .+..+|+|+.||-..
T Consensus 102 ~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 102 DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 87644568899999999999999865444332 367899999999544
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.5e-10 Score=113.48 Aligned_cols=209 Identities=22% Similarity=0.253 Sum_probs=128.9
Q ss_pred CccEEECCCCccCccchhhhcCCC--CCCEEECCCCcCCCCCChhhhcC-CCCCCEEEcCCCCCCccccccCccCCCCcc
Q 002101 23 KLKKLDLRGNLCNNSILSSVARLS--SLTSLHLSHNILQGSIDAKEFDS-LSNLEELDINDNEIDNVEVSRGYRGLRKLK 99 (967)
Q Consensus 23 ~L~~L~Ls~~~~~~~~~~~l~~l~--~L~~L~L~~~~i~~~i~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~ 99 (967)
.-+.+|+.+-.+. |..++++. ....+.+....+.+.--.+.|.- =+.||+||||...|+.......+..|.+|+
T Consensus 137 lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk 213 (419)
T KOG2120|consen 137 LWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLK 213 (419)
T ss_pred ceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhh
Confidence 3467788876655 55666553 44445555443332100111111 235999999999988766545688999999
Q ss_pred EEECCCCCCCCCchhhhhcCCCCcccEEeccCCccccccccchhhcCCCCCcEEEcCCCCCchhhhhhh-hcccccchhh
Q 002101 100 SLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSI-GSIFPSLKNL 178 (967)
Q Consensus 100 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l-~~~~~~l~~l 178 (967)
.|.+.++++ ++.+...++.-.+|+.|+|+.+.-.+.....--+.+++.|..|++++|.+.......+ ...
T Consensus 214 ~lSlEg~~L--dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi------- 284 (419)
T KOG2120|consen 214 NLSLEGLRL--DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI------- 284 (419)
T ss_pred hcccccccc--CcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh-------
Confidence 999999999 7788888999999999999988654433233367889999999999998765432221 111
Q ss_pred cccCcccccccCCCCCCCccccceecccccccccccchhhhhhcccCcccEEecCCCCCCCCCCcccccCCCCCCCCcEE
Q 002101 179 SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQEL 258 (967)
Q Consensus 179 ~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~i~~~~~~~l~~L~~L 258 (967)
-++|+.|++++..-.+-..-...+.+.+|+|.+|||++|..-.. ... ..|.+++.|++|
T Consensus 285 ------------------se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~-~~~~kf~~L~~l 343 (419)
T KOG2120|consen 285 ------------------SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCF-QEFFKFNYLQHL 343 (419)
T ss_pred ------------------chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHH-HHHHhcchheee
Confidence 13455566632222222222233334477777777777653221 222 245566666666
Q ss_pred EccCCc
Q 002101 259 YIDNND 264 (967)
Q Consensus 259 ~L~~n~ 264 (967)
.++.|.
T Consensus 344 SlsRCY 349 (419)
T KOG2120|consen 344 SLSRCY 349 (419)
T ss_pred ehhhhc
Confidence 666664
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.83 E-value=5.7e-10 Score=125.21 Aligned_cols=248 Identities=28% Similarity=0.278 Sum_probs=138.9
Q ss_pred CccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEe
Q 002101 524 LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILD 603 (967)
Q Consensus 524 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 603 (967)
+..++.+.+..|.+.. +-..+..+++|+.|++.+|++.. +...+..+++|++|++++|.|+... .+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence 3344444455554442 12234555566666666666652 2222455566666666666665332 233444566666
Q ss_pred CcCCcCCcCCCCCcCCCcccEEEccCCcCcccCCcccccCCCCCcEEECcCccCCCCcc-hhhhCCCCCCEEEcCCCcCc
Q 002101 604 ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLE 682 (967)
Q Consensus 604 L~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 682 (967)
+++|.+... . .+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus 147 l~~N~i~~~------------------------~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 147 LSGNLISDI------------------------S--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred eccCcchhc------------------------c--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 666665421 1 23345667777777777664433 2 456677777777777765
Q ss_pred ccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeecccccc
Q 002101 683 GEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 762 (967)
Q Consensus 683 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (967)
.. ..+..+..+..+++..|.++..-+.....
T Consensus 200 ~i--~~~~~~~~l~~~~l~~n~i~~~~~l~~~~----------------------------------------------- 230 (414)
T KOG0531|consen 200 EI--EGLDLLKKLVLLSLLDNKISKLEGLNELV----------------------------------------------- 230 (414)
T ss_pred cc--cchHHHHHHHHhhcccccceeccCcccch-----------------------------------------------
Confidence 22 23444445555566666665332211000
Q ss_pred ccchhhhcccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCccc---CCcc-c
Q 002101 763 AYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK---IPRQ-L 838 (967)
Q Consensus 763 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~-l 838 (967)
...|+.+++++|.+. ..+..+..+..+..|++++|++... ..+.....+..+..+.|.+... .... .
T Consensus 231 ------~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (414)
T KOG0531|consen 231 ------MLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYIT 301 (414)
T ss_pred ------hHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccc
Confidence 002677777888777 3445677777888888888877743 3345556677777777776521 2221 4
Q ss_pred cCCCcCCeEecCCCcCccCCCC
Q 002101 839 VDLNTLAIFIVAYNNLSGKIPE 860 (967)
Q Consensus 839 ~~l~~L~~l~ls~N~l~~~~p~ 860 (967)
.....+....+.+|+.....+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 302 SAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred cccccccccccccCcccccccc
Confidence 5567777778888877765553
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=3.2e-09 Score=82.79 Aligned_cols=60 Identities=50% Similarity=0.630 Sum_probs=44.4
Q ss_pred ccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcC
Q 002101 771 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 830 (967)
Q Consensus 771 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 830 (967)
+|++|++++|+++...+..|.++++|++|++++|.++...|++|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 567777777777765556677777777777777777777777777777777777777764
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.72 E-value=6.9e-09 Score=80.91 Aligned_cols=61 Identities=39% Similarity=0.572 Sum_probs=57.8
Q ss_pred CCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcC
Q 002101 794 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL 854 (967)
Q Consensus 794 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 854 (967)
++|++|++++|+++...++.|..+++|++|++++|+++...|..|..+++|+++++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999988889999999999999999999988889999999999999999985
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.67 E-value=2.6e-08 Score=119.21 Aligned_cols=130 Identities=26% Similarity=0.284 Sum_probs=79.8
Q ss_pred CCccEEECCCCc--cCccchhhhcCCCCCCEEECCCCcCCCCCChhhhcCCCCCCEEEcCCCCCCccccccCccCCCCcc
Q 002101 22 SKLKKLDLRGNL--CNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLK 99 (967)
Q Consensus 22 ~~L~~L~Ls~~~--~~~~~~~~l~~l~~L~~L~L~~~~i~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~ 99 (967)
+.|++|=+.+|. +.....+.|..++.|++|||++|.-.+.+|..+ ++|-+||+|+|+++.+...+ ..++++++|.
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP--~~l~~Lk~L~ 621 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLP--SGLGNLKKLI 621 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccc--hHHHHHHhhh
Confidence 356666666664 333334456677777777777766544566554 77777777777777777554 4777777777
Q ss_pred EEECCCCCCCCCchhhhhcCCCCcccEEeccCCccccccccchhhcCCCCCcEEEcC
Q 002101 100 SLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLD 156 (967)
Q Consensus 100 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~ 156 (967)
+|++..+.. ...++.....+++|++|.+..............+.++.+|+.+...
T Consensus 622 ~Lnl~~~~~--l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 622 YLNLEVTGR--LESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred eeccccccc--cccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 777776654 2222344455777777777665533333223345555555555553
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.66 E-value=2.4e-09 Score=120.18 Aligned_cols=219 Identities=29% Similarity=0.310 Sum_probs=149.9
Q ss_pred cCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCCCCCcCCCcccEE
Q 002101 546 SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQV 625 (967)
Q Consensus 546 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L 625 (967)
..+..++.+++..|.+.. +-..++.+++|+.|++.+|++..+. ..+..+++|++|++++|.|+...
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~------------ 134 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE------------ 134 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheecccccccccc------------
Confidence 345567777777887763 3344667788888888888876432 22566777888888887776321
Q ss_pred EccCCcCcccCCcccccCCCCCcEEECcCccCCCCcchhhhCCCCCCEEEcCCCcCcccCC-hhccCCCCCCEEECCCCc
Q 002101 626 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNN 704 (967)
Q Consensus 626 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~ 704 (967)
.+..++.|+.|++++|.++.. ..+..+++|+.+++++|++...-+ . ...+.+++.+++.+|.
T Consensus 135 --------------~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 135 --------------GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred --------------chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCc
Confidence 345566688999999998743 456668889999999999885444 2 5678888889999988
Q ss_pred CcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhhheeeeeeccccccccchhhhcccceEECCCCcccC
Q 002101 705 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG 784 (967)
Q Consensus 705 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 784 (967)
+........ +..+..+++..|.++.
T Consensus 198 i~~i~~~~~-------------------------------------------------------~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 198 IREIEGLDL-------------------------------------------------------LKKLVLLSLLDNKISK 222 (414)
T ss_pred hhcccchHH-------------------------------------------------------HHHHHHhhccccccee
Confidence 764322111 1134455788888874
Q ss_pred CCcccccCCCC--CCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecCCCcCc
Q 002101 785 HIPPQIGNLTR--IQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 855 (967)
Q Consensus 785 ~~p~~~~~l~~--L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 855 (967)
.-+ +..+.. |+.+++++|++. ..+..+..+..+..||+++|+++..- .+.....+..+....|++.
T Consensus 223 ~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 223 LEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred ccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence 322 333343 899999999998 44467778889999999999887432 2345566677777777765
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.66 E-value=1.9e-08 Score=120.30 Aligned_cols=150 Identities=27% Similarity=0.270 Sum_probs=92.7
Q ss_pred CCcEEECcCCCCCCCCcccccCCCCCCEEEccCCc--CCCccchhHhhcCCCCcEEEcccccccccccccccCCccccce
Q 002101 453 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK--LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 530 (967)
Q Consensus 453 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 530 (967)
..+...+.+|.+. .++... .++.|++|-+..|. +. .++..+|..++.|++|||++|.-.+..|..++.+-+|++|
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred heeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 4555555555554 223222 23357777776665 44 6666666667777777777766666677777777777777
Q ss_pred eccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCCEEECCCCc--cccCCCccccCCCCCCEEeCcC
Q 002101 531 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH--LEGPIPVEFCRLDSLQILDISD 606 (967)
Q Consensus 531 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~L~~ 606 (967)
++++..+. .+|..+.++..|.+|++..+.....+|.....+.+|++|.+..-. ........+.++.+|+.+....
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 77777776 667777777777777777766555556666667777777765543 1222233344555555555433
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=6.5e-09 Score=102.22 Aligned_cols=210 Identities=20% Similarity=0.149 Sum_probs=141.8
Q ss_pred CCccEEECCCCccCcc-chhhhcCC-CCCCEEECCCCcCCCCCChhhhcCCCCCCEEEcCCCCCCccccccCccCCCCcc
Q 002101 22 SKLKKLDLRGNLCNNS-ILSSVARL-SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLK 99 (967)
Q Consensus 22 ~~L~~L~Ls~~~~~~~-~~~~l~~l-~~L~~L~L~~~~i~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~ 99 (967)
+.+.++.+.+...... +.+.+.-+ ++|++|||+...|+..--...++.++.|+-|.|-++.+.+-.. ..+++-.+|+
T Consensus 159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~ 237 (419)
T KOG2120|consen 159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLV 237 (419)
T ss_pred CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccce
Confidence 4677777776544433 33333333 4799999999988844344567889999999999999887665 5788999999
Q ss_pred EEECCCCCCCCCchhhhhcCCCCcccEEeccCCccccccccchhhcC-CCCCcEEEcCCCCC--chhhhhhhhcccccch
Q 002101 100 SLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHN-FTNLEYLTLDDSSL--HISLLQSIGSIFPSLK 176 (967)
Q Consensus 100 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~-l~~L~~L~L~~~~~--~~~~~~~l~~~~~~l~ 176 (967)
.|+++.++-.+..+.--.+.+++.|+.|+|++|...... ....+.. =++|+.|+++++.- .......
T Consensus 238 ~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t--------- 307 (419)
T KOG2120|consen 238 RLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLST--------- 307 (419)
T ss_pred eeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHH---------
Confidence 999998865444455556889999999999999887654 2222222 25788888888631 1111111
Q ss_pred hhcccCcccccccCCCCCCCccccceecccccccccccchhhhhhcccCcccEEecCCCCCCCCCCcccccCCCCCCCCc
Q 002101 177 NLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQ 256 (967)
Q Consensus 177 ~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~i~~~~~~~l~~L~ 256 (967)
-.+.+++|.+|||+ .+..+.......+.+ ++.|++|.++.|...... .+ -.+...|.|.
T Consensus 308 ----------------L~~rcp~l~~LDLS-D~v~l~~~~~~~~~k-f~~L~~lSlsRCY~i~p~-~~--~~l~s~psl~ 366 (419)
T KOG2120|consen 308 ----------------LVRRCPNLVHLDLS-DSVMLKNDCFQEFFK-FNYLQHLSLSRCYDIIPE-TL--LELNSKPSLV 366 (419)
T ss_pred ----------------HHHhCCceeeeccc-cccccCchHHHHHHh-cchheeeehhhhcCCChH-He--eeeccCcceE
Confidence 12457888999995 233455555566666 999999999999843200 11 1345667788
Q ss_pred EEEccCC
Q 002101 257 ELYIDNN 263 (967)
Q Consensus 257 ~L~L~~n 263 (967)
+|++.++
T Consensus 367 yLdv~g~ 373 (419)
T KOG2120|consen 367 YLDVFGC 373 (419)
T ss_pred EEEeccc
Confidence 8877766
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.48 E-value=1.4e-08 Score=104.97 Aligned_cols=290 Identities=19% Similarity=0.129 Sum_probs=169.9
Q ss_pred CCccEEECCCCccCc--cchhhhcCCCCCCEEECCCCcCCCCC-ChhhhcCCCCCCEEEcCCC-CCCccccccCccCCCC
Q 002101 22 SKLKKLDLRGNLCNN--SILSSVARLSSLTSLHLSHNILQGSI-DAKEFDSLSNLEELDINDN-EIDNVEVSRGYRGLRK 97 (967)
Q Consensus 22 ~~L~~L~Ls~~~~~~--~~~~~l~~l~~L~~L~L~~~~i~~~i-~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~ 97 (967)
..++.|.+.++.=.+ ..-..-.+++++++|++.+|....+. -...-..+++|++|+|..| .+++......-..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 367788888774322 12234456788888888888633121 1222356888888888874 5555544223467888
Q ss_pred ccEEECCCCCCCCCchhhhhcCCCCcccEEeccCCccccccccchhhcCCCCCcEEEcCCCC-Cchhhhhhhhcccccch
Q 002101 98 LKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSS-LHISLLQSIGSIFPSLK 176 (967)
Q Consensus 98 L~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~l~~~~~~l~ 176 (967)
|++|+++.|.-.....+-....++..++.+.+.+|.-.+.......-..++.+.++++..|. +++.....+......++
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 88888888865333444455666777777776666433321111122334555566655553 35555555566666666
Q ss_pred hhcccCcccccccC-CCCCCCccccceecccccccc-cccchhhhhhcccCcccEEecCCCCCCCCCCcccccCCCCCCC
Q 002101 177 NLSMSGCEVNGVLS-GQGFPHFKSLEHLDMRFARIA-LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 254 (967)
Q Consensus 177 ~l~~~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~-~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~i~~~~~~~l~~ 254 (967)
.+..+++....... ..--.+..+|+.+.+ ..+. ++..-...++..+++|+.+++.++...... .+ ...-.+++.
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l--~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-tL-~sls~~C~~ 373 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLEL--SGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-TL-ASLSRNCPR 373 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEec--cccchhhhhhhhhhhcCChhhhhhcccccceehhh-hH-hhhccCCch
Confidence 66666664422111 111235677888887 4444 444444556666888888888888754311 11 112236778
Q ss_pred CcEEEccCCcccccc-----CchhccCCCCcEEecccCcccCCCCcccccCCCCCcEEEcccCCCC
Q 002101 255 LQELYIDNNDLRGSL-----PWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 315 (967)
Q Consensus 255 L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 315 (967)
|+.+.+++|...... ...-..+..|+.+.|+++.....-.-..+..++.|+.+++.+++-.
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 888888888543221 1222356788888888887542222224667788888888877643
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.31 E-value=1.3e-07 Score=92.05 Aligned_cols=259 Identities=18% Similarity=0.195 Sum_probs=140.7
Q ss_pred hhcCCCccEEECCCCccCccc----hhhhcCCCCCCEEECCCCcCCCCCChhhhcCCCCCCEEEcCCCCCCccccccCcc
Q 002101 18 LSRLSKLKKLDLRGNLCNNSI----LSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYR 93 (967)
Q Consensus 18 l~~l~~L~~L~Ls~~~~~~~~----~~~l~~l~~L~~L~L~~~~i~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 93 (967)
+..+..++.+|||+|-|...- ...+.+-.+|+.-++++-... ..-.....++.-| . ..+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftg-r~kde~~~~L~~L-------------l--~aLl 89 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTG-RDKDELYSNLVML-------------L--KALL 89 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhc-ccHHHHHHHHHHH-------------H--HHHh
Confidence 445667777777777766433 333444566666666655332 2221111111100 1 2455
Q ss_pred CCCCccEEECCCCCCCC--CchhhhhcCCCCcccEEeccCCcccccccc--c---------hhhcCCCCCcEEEcCCCCC
Q 002101 94 GLRKLKSLDLSGVGIRD--GNKLLQSMGSFPSLNTLHLESNNFTATLTT--T---------QELHNFTNLEYLTLDDSSL 160 (967)
Q Consensus 94 ~l~~L~~L~L~~~~l~~--~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~--~---------~~l~~l~~L~~L~L~~~~~ 160 (967)
+|++|+..+||+|-+.. ...+.+.++.-+.|++|.+++|.+-.+... . ....+-|.|++.....|++
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 66666666666665521 112234456667777777777766433210 0 0133457777777777765
Q ss_pred chhhhhhhhcccccchhhcccCcccccccCCCCCCCccccceecccccccccccch---hhhhhcccCcccEEecCCCCC
Q 002101 161 HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSF---LQIIGESMPSLKYLSLSGSTL 237 (967)
Q Consensus 161 ~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~---~~~~~~~l~~L~~L~L~~~~l 237 (967)
........+ ..+.....|+.+.+..++..-.|.. ...+.. +.+|+.||+..|.+
T Consensus 170 engs~~~~a----------------------~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlqDNtf 226 (388)
T COG5238 170 ENGSKELSA----------------------ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTF 226 (388)
T ss_pred ccCcHHHHH----------------------HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHH-hCcceeeeccccch
Confidence 322111111 0122224555666632333222211 112222 78899999999998
Q ss_pred CCCCCcccccCCCCCCCCcEEEccCCccccccCch----hc--cCCCCcEEecccCcccCCCCcc------cccCCCCCc
Q 002101 238 GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWC----LA--NTTSLRILDVSFNQLTGSISSS------PLVHLTSIE 305 (967)
Q Consensus 238 ~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~----l~--~l~~L~~L~L~~n~l~~~i~~~------~~~~l~~L~ 305 (967)
+..++.+...+++..+.|+.|.+.+|-++...... |. ..++|..|-..+|.+.+.+-.. .=.++|-|.
T Consensus 227 t~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~ 306 (388)
T COG5238 227 TLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLV 306 (388)
T ss_pred hhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHH
Confidence 87777777778888888999999999877554332 22 3467788888887665432221 113455666
Q ss_pred EEEcccCCCC
Q 002101 306 ELRLSNNHFR 315 (967)
Q Consensus 306 ~L~L~~n~l~ 315 (967)
.|.+.+|++.
T Consensus 307 ~le~ngNr~~ 316 (388)
T COG5238 307 DLERNGNRIK 316 (388)
T ss_pred HHHHccCcch
Confidence 6666666655
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.27 E-value=3.1e-08 Score=108.83 Aligned_cols=127 Identities=34% Similarity=0.394 Sum_probs=83.0
Q ss_pred CCCEEEcCCCcCcccCChhccCCCCCCEEECCCCcCcccCCCcccccccccccCCCCCCCCCcccccccCCCCCchhhhh
Q 002101 670 QLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI 749 (967)
Q Consensus 670 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (967)
.|.+.+.+.|.+. ....++.-++.|+.|||++|+++... .+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~L------------------------------------ 205 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NL------------------------------------ 205 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HH------------------------------------
Confidence 4666667777766 44456666777777777777765321 11
Q ss_pred heeeeeeccccccccchhhhcccceEECCCCcccCCCcc-cccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCC
Q 002101 750 LEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP-QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 828 (967)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 828 (967)
..++.|+.|||+.|.+. .+|. ....++ |+.|+|++|.++.. ..+.++++|+.||+++|
T Consensus 206 -----------------r~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 206 -----------------RRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYN 264 (1096)
T ss_pred -----------------Hhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHh
Confidence 12456777777777777 3443 233444 88888888888744 45677888888888888
Q ss_pred cCcccCC-ccccCCCcCCeEecCCCcCcc
Q 002101 829 KLSGKIP-RQLVDLNTLAIFIVAYNNLSG 856 (967)
Q Consensus 829 ~l~~~~p-~~l~~l~~L~~l~ls~N~l~~ 856 (967)
-|++--. ..+..+.+|..|+|.+|++.|
T Consensus 265 ll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 265 LLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 7765322 234556778888888888876
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=5.5e-07 Score=88.96 Aligned_cols=219 Identities=22% Similarity=0.283 Sum_probs=118.2
Q ss_pred hhcCCCCCCEEECCCCcCCCCCChhhh-cCCCCCCEEEcCCCCCCccccc-cCccCCCCccEEECCCCCCCCCchhhhhc
Q 002101 41 SVARLSSLTSLHLSHNILQGSIDAKEF-DSLSNLEELDINDNEIDNVEVS-RGYRGLRKLKSLDLSGVGIRDGNKLLQSM 118 (967)
Q Consensus 41 ~l~~l~~L~~L~L~~~~i~~~i~~~~~-~~l~~L~~L~Ls~n~i~~~~~~-~~~~~l~~L~~L~L~~~~l~~~~~~~~~l 118 (967)
.+.....+..|.+.++.|...-+...| ...+.++.|||.+|.|++.+-. ..+.+++.|++|+++.|.+. ..+ ..+
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~--s~I-~~l 116 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS--SDI-KSL 116 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC--Ccc-ccC
Confidence 334444555666667766533222223 3466777788888877765421 12567777888888777762 221 112
Q ss_pred -CCCCcccEEeccCCccccccccchhhcCCCCCcEEEcCCCCCchhhhhhhhcccccchhhccc-CcccccccCCCCCCC
Q 002101 119 -GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMS-GCEVNGVLSGQGFPH 196 (967)
Q Consensus 119 -~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~l~~l~~~-~~~~~~~~~~~~l~~ 196 (967)
....+|+.|.|.+..+.-.. ....+..+|.+++|.++.|+.. .+.+. +|... .
T Consensus 117 p~p~~nl~~lVLNgT~L~w~~-~~s~l~~lP~vtelHmS~N~~r---------------q~n~Dd~c~e~---------~ 171 (418)
T KOG2982|consen 117 PLPLKNLRVLVLNGTGLSWTQ-STSSLDDLPKVTELHMSDNSLR---------------QLNLDDNCIED---------W 171 (418)
T ss_pred cccccceEEEEEcCCCCChhh-hhhhhhcchhhhhhhhccchhh---------------hhccccccccc---------c
Confidence 34457777777766653211 2235566777777777776432 11111 11110 0
Q ss_pred ccccceeccccccccccc--chhhhhhcccCcccEEecCCCCCCCCCCcccccCCCCCCCCcEEEccCCcccccc-Cchh
Q 002101 197 FKSLEHLDMRFARIALNT--SFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSL-PWCL 273 (967)
Q Consensus 197 l~~L~~L~L~~~~~~~~~--~~~~~~~~~l~~L~~L~L~~~~l~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l 273 (967)
-+.+++++. .+|...- ..+. +.+.+|++..+-+..|.+.. .-.......++.+.-|+|+.++|..-. -..+
T Consensus 172 s~~v~tlh~--~~c~~~~w~~~~~-l~r~Fpnv~sv~v~e~PlK~---~s~ek~se~~p~~~~LnL~~~~idswasvD~L 245 (418)
T KOG2982|consen 172 STEVLTLHQ--LPCLEQLWLNKNK-LSRIFPNVNSVFVCEGPLKT---ESSEKGSEPFPSLSCLNLGANNIDSWASVDAL 245 (418)
T ss_pred chhhhhhhc--CCcHHHHHHHHHh-HHhhcccchheeeecCcccc---hhhcccCCCCCcchhhhhcccccccHHHHHHH
Confidence 112333333 2222110 1111 22237788888888887765 222345566777777888877765321 2346
Q ss_pred ccCCCCcEEecccCcccCCC
Q 002101 274 ANTTSLRILDVSFNQLTGSI 293 (967)
Q Consensus 274 ~~l~~L~~L~L~~n~l~~~i 293 (967)
.++++|+.|.++++.++..+
T Consensus 246 n~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 246 NGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred cCCchhheeeccCCcccccc
Confidence 67777777777777766433
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.24 E-value=5.1e-08 Score=84.79 Aligned_cols=88 Identities=20% Similarity=0.305 Sum_probs=57.2
Q ss_pred ccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecC
Q 002101 771 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 850 (967)
Q Consensus 771 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 850 (967)
..+.|+|++|.|+ .+|.++..++.|+.|+++.|.+. ..|..+..+.++..||..+|.+. ++|..+.--+.....++.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lg 154 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLG 154 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhc
Confidence 4566777777776 56777777777777777777777 55666666777777777777766 555544333334444556
Q ss_pred CCcCccCCCCC
Q 002101 851 YNNLSGKIPEW 861 (967)
Q Consensus 851 ~N~l~~~~p~~ 861 (967)
++++.+..|..
T Consensus 155 nepl~~~~~~k 165 (177)
T KOG4579|consen 155 NEPLGDETKKK 165 (177)
T ss_pred CCcccccCccc
Confidence 66666666553
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.23 E-value=5.8e-08 Score=100.47 Aligned_cols=289 Identities=20% Similarity=0.151 Sum_probs=185.9
Q ss_pred CCCCEEECCCCcCCCCCChh-hhcCCCCCCEEEcCCCC-CCccccccCccCCCCccEEECCCCCCCCCchhhhhcCCCCc
Q 002101 46 SSLTSLHLSHNILQGSIDAK-EFDSLSNLEELDINDNE-IDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPS 123 (967)
Q Consensus 46 ~~L~~L~L~~~~i~~~i~~~-~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~l~~l~~ 123 (967)
..|+.|.+++++-.+.-+.. .-.+++++++|++.+|. +++......-..+++|++|++..|..-+...+......+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 68999999999865433332 23689999999999985 34333211235789999999998643212232334567999
Q ss_pred ccEEeccCCccccccccchhhcCCCCCcEEEcCCCCC-chhhhhhhhcccccchhhcccCcccccccC-CCCCCCccccc
Q 002101 124 LNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL-HISLLQSIGSIFPSLKNLSMSGCEVNGVLS-GQGFPHFKSLE 201 (967)
Q Consensus 124 L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~-~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~-~~~l~~l~~L~ 201 (967)
|++|++++|.-........-..+++.++.+.+++|.= ..+....++.-...+..+++..|...+... ...-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 9999999987543332334567888899998887632 122222233333334444444553222111 11223567889
Q ss_pred eecccccccccccchhhhhhcccCcccEEecCCCC-CCCCCCcccccCC-CCCCCCcEEEccCCccccc--cCchhccCC
Q 002101 202 HLDMRFARIALNTSFLQIIGESMPSLKYLSLSGST-LGTNSSRILDQGL-CPLAHLQELYIDNNDLRGS--LPWCLANTT 277 (967)
Q Consensus 202 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~~~~~i~~~~~-~~l~~L~~L~L~~n~l~~~--~~~~l~~l~ 277 (967)
+++.+ +...........+++++++|+.+.+++|+ ++.... ..+ .+.++|+.+++.++..... +...-.+++
T Consensus 298 ~l~~s-~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f----t~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 298 VLCYS-SCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF----TMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhccc-CCCCCchHHHHHHhcCCCceEEEeccccchhhhhhh----hhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 99884 33345556666777789999999999997 332111 112 3668899999999965422 222234789
Q ss_pred CCcEEecccCcccCCC----CcccccCCCCCcEEEcccCCCCCCCCcccccCCCCccEEeccCCcc
Q 002101 278 SLRILDVSFNQLTGSI----SSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI 339 (967)
Q Consensus 278 ~L~~L~L~~n~l~~~i----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ls~n~l 339 (967)
.|+.|.+++|.....- -...-..+..|+.+.+++++...+.....+..++.|+.+++-.+.-
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 9999999999643111 0112245678999999999988676777788888999988876653
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=4.3e-07 Score=89.70 Aligned_cols=226 Identities=19% Similarity=0.269 Sum_probs=143.4
Q ss_pred cEEECCCCccCccc-hhhhc-CCCCCCEEECCCCcCCC--CCChhhhcCCCCCCEEEcCCCCCCccccccCc-cCCCCcc
Q 002101 25 KKLDLRGNLCNNSI-LSSVA-RLSSLTSLHLSHNILQG--SIDAKEFDSLSNLEELDINDNEIDNVEVSRGY-RGLRKLK 99 (967)
Q Consensus 25 ~~L~Ls~~~~~~~~-~~~l~-~l~~L~~L~L~~~~i~~--~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~l~~L~ 99 (967)
..|-+.++.|.... ...|+ ..++++.|||.+|.|+. +|. .++.+++.|++|+|++|++...+ ..+ ..+.+|+
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~-~ile~lP~l~~LNls~N~L~s~I--~~lp~p~~nl~ 124 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIG-AILEQLPALTTLNLSCNSLSSDI--KSLPLPLKNLR 124 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHH-HHHhcCccceEeeccCCcCCCcc--ccCcccccceE
Confidence 34555566555332 22333 46889999999998873 122 34578999999999999887655 344 4677899
Q ss_pred EEECCCCCCCCCchh-hhhcCCCCcccEEeccCCccccccccchhhcC-CCCCcEEEcCCCCCch-hhhhhhhcccccch
Q 002101 100 SLDLSGVGIRDGNKL-LQSMGSFPSLNTLHLESNNFTATLTTTQELHN-FTNLEYLTLDDSSLHI-SLLQSIGSIFPSLK 176 (967)
Q Consensus 100 ~L~L~~~~l~~~~~~-~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~-l~~L~~L~L~~~~~~~-~~~~~l~~~~~~l~ 176 (967)
+|-|.+..+ ..+- -..+..+|.+++|.++.|++............ -+.+++|....|...- .....+++.++++.
T Consensus 125 ~lVLNgT~L--~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 125 VLVLNGTGL--SWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred EEEEcCCCC--ChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 999988877 3332 33467789999999998855332211122222 2356666666554321 11123455666777
Q ss_pred hhcccCcccccccCCCCCCCccccceecccccccccccchh-hhhhcccCcccEEecCCCCCCCCCCcccc-----cCCC
Q 002101 177 NLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFL-QIIGESMPSLKYLSLSGSTLGTNSSRILD-----QGLC 250 (967)
Q Consensus 177 ~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~l~~~~~~i~~-----~~~~ 250 (967)
......|.......+.....++.+.-|+| +.+.+...-. +.+.+ +++|..|.++.+.+.. .+.. --++
T Consensus 203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL--~~~~idswasvD~Ln~-f~~l~dlRv~~~Pl~d---~l~~~err~llIa 276 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPFPSLSCLNL--GANNIDSWASVDALNG-FPQLVDLRVSENPLSD---PLRGGERRFLLIA 276 (418)
T ss_pred heeeecCcccchhhcccCCCCCcchhhhh--cccccccHHHHHHHcC-CchhheeeccCCcccc---cccCCcceEEEEe
Confidence 66666776666666667788888888888 5555544322 33444 9999999999998765 2211 1246
Q ss_pred CCCCCcEEEcc
Q 002101 251 PLAHLQELYID 261 (967)
Q Consensus 251 ~l~~L~~L~L~ 261 (967)
.+++++.|+=+
T Consensus 277 RL~~v~vLNGs 287 (418)
T KOG2982|consen 277 RLTKVQVLNGS 287 (418)
T ss_pred eccceEEecCc
Confidence 78888888755
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.17 E-value=9.8e-08 Score=105.07 Aligned_cols=194 Identities=25% Similarity=0.218 Sum_probs=112.4
Q ss_pred CCCccEEEecCCcCCcCC-ChhhhhcCCCCcEEECcCCCCCCCCcccccCC-CCCCEEEccCCcCC----------Cccc
Q 002101 426 HKRLRFLDVSNNNFQGHI-PVEIGDILPSLVYFNISMNALDGSIPSSFGNV-IFLQFLDLSNNKLT----------GEIP 493 (967)
Q Consensus 426 ~~~L~~L~l~~n~l~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~----------~~i~ 493 (967)
+++++.+.+-.-.-.+.. |-.++. +.+|++|.+.++.+.. ...+..+ ..|++|-- +|.+. |.+.
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifp-F~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ 158 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFP-FRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDIS 158 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceecc-ccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccc
Confidence 344555554433322222 445554 6788999998888763 1111111 22333321 12211 1111
Q ss_pred hhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCc-cccCC
Q 002101 494 DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR-WLGNL 572 (967)
Q Consensus 494 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l 572 (967)
.... ...|.+.+.++|.+. ....++.-++.|+.|+|++|+++..- .+..|+.|++|||++|.+. .+|. ....+
T Consensus 159 ns~~--Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc 232 (1096)
T KOG1859|consen 159 NSPV--WNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC 232 (1096)
T ss_pred cchh--hhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh
Confidence 1110 235677777777776 44556666778888888888877442 6777888888888888876 3443 22334
Q ss_pred CCCCEEECCCCccccCCCccccCCCCCCEEeCcCCcCCcCC--CCCcCCCcccEEEccCCcC
Q 002101 573 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSL--PSCFYPLSIKQVHLSKNML 632 (967)
Q Consensus 573 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~L~~L~l~~n~~ 632 (967)
. |+.|.+++|.++. -..+.++.+|+.||+++|-+.+.- ...+.+..|+.|.|.+|.+
T Consensus 233 ~-L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 233 K-LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred h-heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 4 8888888887753 234667788888888888776432 1222356677777777765
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.05 E-value=3.5e-06 Score=98.50 Aligned_cols=154 Identities=20% Similarity=0.306 Sum_probs=112.2
Q ss_pred CCccEEECCCCcc-Cccchhhhc-CCCCCCEEECCCCcCCCCCChhhhcCCCCCCEEEcCCCCCCccccccCccCCCCcc
Q 002101 22 SKLKKLDLRGNLC-NNSILSSVA-RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLK 99 (967)
Q Consensus 22 ~~L~~L~Ls~~~~-~~~~~~~l~-~l~~L~~L~L~~~~i~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~ 99 (967)
.+|++||+++... ...-+..++ .||+|++|.+++-.+..+=-.....++++|..||+|+++++... .+++|++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~---GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS---GISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH---HHhccccHH
Confidence 5789999998643 223345555 48999999999987763222345689999999999999998874 689999999
Q ss_pred EEECCCCCCCCCchhhhhcCCCCcccEEeccCCccccccccc----hhhcCCCCCcEEEcCCCCCchhhhhhhhcccccc
Q 002101 100 SLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTT----QELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSL 175 (967)
Q Consensus 100 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~----~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~l 175 (967)
.|.+.+-.+.+. .-...+-++++|+.||+|........... +.-..+|+|+.||.+++.+.....+.+-...+++
T Consensus 199 ~L~mrnLe~e~~-~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 199 VLSMRNLEFESY-QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HHhccCCCCCch-hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 999998887532 33445778999999999987665443111 1234589999999999988877776666555544
Q ss_pred hhhc
Q 002101 176 KNLS 179 (967)
Q Consensus 176 ~~l~ 179 (967)
+...
T Consensus 278 ~~i~ 281 (699)
T KOG3665|consen 278 QQIA 281 (699)
T ss_pred hhhh
Confidence 4443
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.97 E-value=2.6e-06 Score=99.61 Aligned_cols=59 Identities=27% Similarity=0.462 Sum_probs=27.3
Q ss_pred CCCCccEEECCCCCCCCCchhhhhcCCCCcccEEeccCCccccccccchhhcCCCCCcEEEcCC
Q 002101 94 GLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD 157 (967)
Q Consensus 94 ~l~~L~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~ 157 (967)
.+|.|++|.+++-.+. ...+.....++|+|..||+++++++.. ..++.+++|++|.+.+
T Consensus 146 ~LPsL~sL~i~~~~~~-~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFD-NDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKNLQVLSMRN 204 (699)
T ss_pred hCcccceEEecCceec-chhHHHHhhccCccceeecCCCCccCc----HHHhccccHHHHhccC
Confidence 4455555555544332 222333444455555555555544433 3444455555544443
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.86 E-value=7.9e-07 Score=77.56 Aligned_cols=83 Identities=22% Similarity=0.247 Sum_probs=41.6
Q ss_pred CCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEEC
Q 002101 477 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL 556 (967)
Q Consensus 477 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 556 (967)
.|+..+|++|.+. .+|..+....+.++.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|+.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 3444455555555 555555444445555555555555 34444555555555555555554 33444444445555555
Q ss_pred cCCcCC
Q 002101 557 NNNNLS 562 (967)
Q Consensus 557 ~~n~l~ 562 (967)
.+|.+.
T Consensus 131 ~~na~~ 136 (177)
T KOG4579|consen 131 PENARA 136 (177)
T ss_pred CCCccc
Confidence 554443
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.80 E-value=3.1e-05 Score=75.83 Aligned_cols=164 Identities=17% Similarity=0.255 Sum_probs=109.1
Q ss_pred CCCCCccccccccchhhhhcCCCccEEECCCCccCcc-----------chhhhcCCCCCCEEECCCCcCCCCCCh---hh
Q 002101 1 MSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNS-----------ILSSVARLSSLTSLHLSHNILQGSIDA---KE 66 (967)
Q Consensus 1 l~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~~~~~-----------~~~~l~~l~~L~~L~L~~~~i~~~i~~---~~ 66 (967)
||+|.|...-.......+++-++|+..++++-- +|. +.+++-+|++|+..+||+|.+....|+ +.
T Consensus 37 LSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~ 115 (388)
T COG5238 37 LSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDL 115 (388)
T ss_pred ccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHH
Confidence 577777543333455568888999999999863 322 235777899999999999998855553 34
Q ss_pred hcCCCCCCEEEcCCCCCCccccc------------cCccCCCCccEEECCCCCCCCCchh--hhhcCCCCcccEEeccCC
Q 002101 67 FDSLSNLEELDINDNEIDNVEVS------------RGYRGLRKLKSLDLSGVGIRDGNKL--LQSMGSFPSLNTLHLESN 132 (967)
Q Consensus 67 ~~~l~~L~~L~Ls~n~i~~~~~~------------~~~~~l~~L~~L~L~~~~l~~~~~~--~~~l~~l~~L~~L~L~~n 132 (967)
++.-+.|.||.+++|.+-.+... .....-|.|++.....|++...... ...+..-..|+++.+..|
T Consensus 116 is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qN 195 (388)
T COG5238 116 ISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQN 195 (388)
T ss_pred HhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeec
Confidence 67889999999999986533210 1244667888888888887533211 122444467888888888
Q ss_pred ccccccc---cchhhcCCCCCcEEEcCCCCCchhhh
Q 002101 133 NFTATLT---TTQELHNFTNLEYLTLDDSSLHISLL 165 (967)
Q Consensus 133 ~~~~~~~---~~~~l~~l~~L~~L~L~~~~~~~~~~ 165 (967)
.+...-. ....+..+.+|+.|++.+|.++-...
T Consensus 196 gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS 231 (388)
T COG5238 196 GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS 231 (388)
T ss_pred CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH
Confidence 7753210 01234556788888888887765443
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.75 E-value=4.6e-05 Score=71.71 Aligned_cols=128 Identities=25% Similarity=0.334 Sum_probs=91.7
Q ss_pred ccEEECCCCccCccchhhhcC-CCCCCEEECCCCcCCCCCChhhhcCCCCCCEEEcCCCCCCccccccCccCCCCccEEE
Q 002101 24 LKKLDLRGNLCNNSILSSVAR-LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLD 102 (967)
Q Consensus 24 L~~L~Ls~~~~~~~~~~~l~~-l~~L~~L~L~~~~i~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ 102 (967)
=+.+||.+..+.. .+.++. +.+...+||++|.+. .++ .|..+++|.+|.|++|.|+.+.+ .--..+++|+.|.
T Consensus 21 e~e~~LR~lkip~--ienlg~~~d~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~ 94 (233)
T KOG1644|consen 21 ERELDLRGLKIPV--IENLGATLDQFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLI 94 (233)
T ss_pred ccccccccccccc--hhhccccccccceecccccchh-hcc--cCCCccccceEEecCCcceeecc-chhhhccccceEE
Confidence 4666777655432 222332 356778999999887 333 47889999999999999998886 3445677899999
Q ss_pred CCCCCCCCCchhhhhcCCCCcccEEeccCCccccccccch-hhcCCCCCcEEEcCCC
Q 002101 103 LSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQ-ELHNFTNLEYLTLDDS 158 (967)
Q Consensus 103 L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~l~~l~~L~~L~L~~~ 158 (967)
|.+|++...+. ...+..+|+|++|.+-+|.+..-..... .+..+|+|+.||...-
T Consensus 95 LtnNsi~~l~d-l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 95 LTNNSIQELGD-LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCcchhhhhh-cchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 99988753332 3447788999999999998875543222 5778999999998864
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=2.6e-05 Score=55.30 Aligned_cols=36 Identities=42% Similarity=0.700 Sum_probs=18.5
Q ss_pred CCCEEECcCccccccCcccccCCCCCCEEECcCCcCc
Q 002101 795 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 831 (967)
Q Consensus 795 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 831 (967)
+|++|++++|+|+. +|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 45555555555553 3334555555555555555555
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=2.9e-05 Score=55.03 Aligned_cols=37 Identities=43% Similarity=0.742 Sum_probs=21.9
Q ss_pred ccceEECCCCcccCCCcccccCCCCCCEEECcCccccc
Q 002101 771 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG 808 (967)
Q Consensus 771 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 808 (967)
+|++|++++|+|+ .+|..++++++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 4666666666666 345456666666666666666663
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=8.5e-05 Score=79.84 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=18.1
Q ss_pred CCCCEEECcCccccccCcccccCCCCCCEEECcCC
Q 002101 794 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 828 (967)
Q Consensus 794 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 828 (967)
++|+.|++++|... ..|..+. .+|+.|+++.|
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 45666666666654 2333333 46666666665
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.69 E-value=5.2e-05 Score=71.32 Aligned_cols=109 Identities=25% Similarity=0.305 Sum_probs=89.5
Q ss_pred CccEEECCCCccCccchhhhcCCCCCCEEECCCCcCCCCCChhhhcCCCCCCEEEcCCCCCCccccccCccCCCCccEEE
Q 002101 23 KLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLD 102 (967)
Q Consensus 23 ~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ 102 (967)
....+||++|.+.. .+.|..+++|..|.+..|+|+ .|.+..-..+++|..|.|++|+|....--..+..|++|++|.
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 55788999998765 456888999999999999999 788888778899999999999998776445688999999999
Q ss_pred CCCCCCCCCchhh-hhcCCCCcccEEeccCCcc
Q 002101 103 LSGVGIRDGNKLL-QSMGSFPSLNTLHLESNNF 134 (967)
Q Consensus 103 L~~~~l~~~~~~~-~~l~~l~~L~~L~L~~n~~ 134 (967)
+-+|..+.....- ..+..+|+|+.||......
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 9999875433322 2367899999999887644
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.37 E-value=0.00026 Score=65.18 Aligned_cols=121 Identities=18% Similarity=0.258 Sum_probs=36.4
Q ss_pred ccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCC
Q 002101 472 FGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSL 551 (967)
Q Consensus 472 ~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 551 (967)
|.++++|+.+.+.. .+. .++...|..+++|+.+.+..+ +.......|.++++++.+.+.+ .+.......|..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 33444444444432 232 344444444444444444332 3323333344443444444433 2221222334444455
Q ss_pred cEEECcCCcCCCCCCccccCCCCCCEEECCCCccccCCCccccCCCCC
Q 002101 552 KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 599 (967)
Q Consensus 552 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 599 (967)
+.+++..+ +.......|.++ .++.+.+.. .+..+....|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 55554433 222233344444 555555443 2222334444444443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.37 E-value=0.00031 Score=64.65 Aligned_cols=124 Identities=22% Similarity=0.230 Sum_probs=54.0
Q ss_pred hhhhcCCCCcEEECcCCCCCCCCcccccCCCCCCEEEccCCcCCCccchhHhhcCCCCcEEEcccccccccccccccCCc
Q 002101 446 EIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR 525 (967)
Q Consensus 446 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 525 (967)
..+..+++|+.+.+.. .+..+...+|.++++|+.+.+.++ +. .++...|..+++++.+.+.. .+.......|..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccc
Confidence 3333445555555553 344344455666666666666654 44 56666666666667776654 44334445566667
Q ss_pred cccceeccCccccccCCccCcCCCCCcEEECcCCcCCCCCCccccCCCCCC
Q 002101 526 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQ 576 (967)
Q Consensus 526 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 576 (967)
+|+.+++..+ +...-...|.++ .|+.+.+.. .+..+....|.++++|+
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 7777777654 443444566666 777777765 33334455666666553
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.37 E-value=0.00057 Score=73.62 Aligned_cols=54 Identities=13% Similarity=0.144 Sum_probs=29.7
Q ss_pred CCCCcEEEcccccccccccccccCCccccceeccCccccccCCccCcCCCCCcEEECcCC
Q 002101 500 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNN 559 (967)
Q Consensus 500 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 559 (967)
+.+++.|++++|.++. +|. -.++|+.|.+++|.-...+|..+. ++|++|++++|
T Consensus 51 ~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 5677777777776653 231 123466666666443334454332 35666666665
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.18 E-value=0.00019 Score=70.91 Aligned_cols=111 Identities=23% Similarity=0.270 Sum_probs=65.2
Q ss_pred hcCCCCCCEEECCCCcCCCCCChhhhcCCCCCCEEEcCCCC--CCccccccCccCCCCccEEECCCCCCCCCchhhhhcC
Q 002101 42 VARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNE--IDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMG 119 (967)
Q Consensus 42 l~~l~~L~~L~L~~~~i~~~i~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~l~ 119 (967)
.-.+..|+.|++.++.++ .+ .-|-.|++|+.|.+|.|. +..... .....+++|++|+++.|++.. -.-...+.
T Consensus 39 ~d~~~~le~ls~~n~glt-t~--~~~P~Lp~LkkL~lsdn~~~~~~~l~-vl~e~~P~l~~l~ls~Nki~~-lstl~pl~ 113 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLT-TL--TNFPKLPKLKKLELSDNYRRVSGGLE-VLAEKAPNLKVLNLSGNKIKD-LSTLRPLK 113 (260)
T ss_pred cccccchhhhhhhcccee-ec--ccCCCcchhhhhcccCCcccccccce-ehhhhCCceeEEeecCCcccc-ccccchhh
Confidence 334566666666666665 22 224566777788887773 332221 234455788888888877743 22233456
Q ss_pred CCCcccEEeccCCccccccccch-hhcCCCCCcEEEcCC
Q 002101 120 SFPSLNTLHLESNNFTATLTTTQ-ELHNFTNLEYLTLDD 157 (967)
Q Consensus 120 ~l~~L~~L~L~~n~~~~~~~~~~-~l~~l~~L~~L~L~~ 157 (967)
.+.+|..|++.+|.......... .+.-+++|++|+-..
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 66777778887777655322222 455577887776544
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.98 E-value=0.00026 Score=82.31 Aligned_cols=117 Identities=26% Similarity=0.154 Sum_probs=65.8
Q ss_pred CCCCCCEEECCCCcCCCCCC-hhhhcCCCCCCEEEcCCC-CCCcccc---ccCccCCCCccEEECCCCC-CCCCchhhhh
Q 002101 44 RLSSLTSLHLSHNILQGSID-AKEFDSLSNLEELDINDN-EIDNVEV---SRGYRGLRKLKSLDLSGVG-IRDGNKLLQS 117 (967)
Q Consensus 44 ~l~~L~~L~L~~~~i~~~i~-~~~~~~l~~L~~L~Ls~n-~i~~~~~---~~~~~~l~~L~~L~L~~~~-l~~~~~~~~~ 117 (967)
.++.|+.|.+.++.-..... ......+++|+.|+++++ ......+ ......+++|+.|+++.+. ++ +..+...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-d~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-DIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC-chhHHHH
Confidence 36777777777775332211 233467777888887763 1111111 1234566777888887776 42 2232222
Q ss_pred cCCCCcccEEeccCCccccccccchhhcCCCCCcEEEcCCCCCc
Q 002101 118 MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLH 161 (967)
Q Consensus 118 l~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 161 (967)
...+++|++|.+.+|.-.+..........++.|++|++++|...
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 33377888888776663222223334556777888888877653
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.56 E-value=0.0013 Score=65.05 Aligned_cols=85 Identities=24% Similarity=0.271 Sum_probs=43.8
Q ss_pred CCCcEEEccCCccccccCchhccCCCCcEEecccC--cccCCCCcccccCCCCCcEEEcccCCCCCCCCcccccCCCCcc
Q 002101 253 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFN--QLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLK 330 (967)
Q Consensus 253 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n--~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 330 (967)
..|+.|++.+..++.. ..|..+++|++|.++.| .+.+.++. ....+++|++|++++|++....+...+..+.+|.
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3444455555444422 22445556666666666 44444443 3344466666666666665433444455555566
Q ss_pred EEeccCCccc
Q 002101 331 IFDAKNNEIN 340 (967)
Q Consensus 331 ~L~ls~n~l~ 340 (967)
.|++..|..+
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 6666555443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.00033 Score=69.16 Aligned_cols=103 Identities=24% Similarity=0.266 Sum_probs=61.8
Q ss_pred CCCCCEEECCCCcCCCCCChhhhcCCCCCCEEEcCCCCCCccccccCccCCCCccEEECCCCCCCCCchhhhhcCCCCcc
Q 002101 45 LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSL 124 (967)
Q Consensus 45 l~~L~~L~L~~~~i~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~l~~l~~L 124 (967)
+.+.+.|+.-+|.+. + .++...++.|++|.||-|.|++..+ +..|++|+.|+|..|.|.+. .-..-+.++++|
T Consensus 18 l~~vkKLNcwg~~L~-D--Isic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sl-dEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-D--ISICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESL-DELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCcc-H--HHHHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccH-HHHHHHhcCchh
Confidence 445566666666666 2 3334666777777777777766653 66777777777777766432 223346667777
Q ss_pred cEEeccCCcccccccc---chhhcCCCCCcEEE
Q 002101 125 NTLHLESNNFTATLTT---TQELHNFTNLEYLT 154 (967)
Q Consensus 125 ~~L~L~~n~~~~~~~~---~~~l~~l~~L~~L~ 154 (967)
+.|-|..|.-.+.... ...+.-+|+|++||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777766655443311 12456667777665
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.00027 Score=69.79 Aligned_cols=105 Identities=24% Similarity=0.300 Sum_probs=80.4
Q ss_pred hcCCCccEEECCCCccCccchhhhcCCCCCCEEECCCCcCCCCCChhhhcCCCCCCEEEcCCCCCCccccccCccCCCCc
Q 002101 19 SRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKL 98 (967)
Q Consensus 19 ~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L 98 (967)
+++.+++.|++=+++++.. .-..+++.|++|.||-|.|+ .+. .|..|++|+.|.|..|.|.++....-+.++++|
T Consensus 16 sdl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred hHHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 4556788889988887752 33457899999999999998 444 379999999999999999887643457899999
Q ss_pred cEEECCCCCCCC-Cchh--hhhcCCCCcccEEe
Q 002101 99 KSLDLSGVGIRD-GNKL--LQSMGSFPSLNTLH 128 (967)
Q Consensus 99 ~~L~L~~~~l~~-~~~~--~~~l~~l~~L~~L~ 128 (967)
+.|.|..|.-.. .+.- ...+..+|+|+.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999886521 1111 12377889999987
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.06 E-value=0.0009 Score=77.77 Aligned_cols=62 Identities=27% Similarity=0.188 Sum_probs=27.1
Q ss_pred CCCCcEEECcCCC-CCCCCcccccC-CCCCCEEEccCCc-CCCccchhHhhcCCCCcEEEccccc
Q 002101 451 LPSLVYFNISMNA-LDGSIPSSFGN-VIFLQFLDLSNNK-LTGEIPDHLAMCCVNLEFLSLSNNS 512 (967)
Q Consensus 451 ~~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~L~~n~-l~~~i~~~~~~~l~~L~~L~L~~n~ 512 (967)
+++|+.++++++. ++...-..+.. +++|++|.+.++. +++.--..+...++.|++|+++.+.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3455555555554 33222222221 4455555544444 3322222333445555555555543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.78 E-value=0.01 Score=34.79 Aligned_cols=12 Identities=58% Similarity=0.769 Sum_probs=5.5
Q ss_pred CCEEECcCcccc
Q 002101 796 IQTLNLSHNNLT 807 (967)
Q Consensus 796 L~~L~Ls~N~l~ 807 (967)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.72 E-value=0.013 Score=34.32 Aligned_cols=18 Identities=50% Similarity=0.726 Sum_probs=8.9
Q ss_pred CCEEECcCCcCcccCCccc
Q 002101 820 IESLDLSYNKLSGKIPRQL 838 (967)
Q Consensus 820 L~~L~Ls~N~l~~~~p~~l 838 (967)
|++|||++|+++ .+|.++
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 444443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.14 E-value=0.0014 Score=73.63 Aligned_cols=198 Identities=26% Similarity=0.262 Sum_probs=93.0
Q ss_pred CCEEEcCCCCCCccccc---cCccCCCCccEEECCCCCCCCCc--hhhhhcCCC-CcccEEeccCCccccccc--cchhh
Q 002101 73 LEELDINDNEIDNVEVS---RGYRGLRKLKSLDLSGVGIRDGN--KLLQSMGSF-PSLNTLHLESNNFTATLT--TTQEL 144 (967)
Q Consensus 73 L~~L~Ls~n~i~~~~~~---~~~~~l~~L~~L~L~~~~l~~~~--~~~~~l~~l-~~L~~L~L~~n~~~~~~~--~~~~l 144 (967)
+.+|.|.+|.+...... ..+..+..|..|++++|.+.+.+ .+...+... ..|++|++..|.+..... ....+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 45555555555443221 22445555555555555553111 111222222 445555555555543321 12344
Q ss_pred cCCCCCcEEEcCCCCCchhhhhhhhcccccchhhcccCcccccccCCCCCCCccccceecccccccccccchhhhhhc--
Q 002101 145 HNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE-- 222 (967)
Q Consensus 145 ~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~-- 222 (967)
.....++.+++..|.+.......+...... .+....++++|++ .++.++...+..+..
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~------------------~~~~~~~le~L~L--~~~~~t~~~c~~l~~~l 228 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALES------------------AASPLSSLETLKL--SRCGVTSSSCALLDEVL 228 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhh------------------hhcccccHHHHhh--hhcCcChHHHHHHHHHH
Confidence 445566666666665542222111110000 1223445555555 444433333322211
Q ss_pred -ccCc-ccEEecCCCCCCCCCCcccccCCCCC-CCCcEEEccCCccccccC----chhccCCCCcEEecccCccc
Q 002101 223 -SMPS-LKYLSLSGSTLGTNSSRILDQGLCPL-AHLQELYIDNNDLRGSLP----WCLANTTSLRILDVSFNQLT 290 (967)
Q Consensus 223 -~l~~-L~~L~L~~~~l~~~~~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~ 290 (967)
..++ +..+++..|.+.+.........+... +.+++++++.|.++.... ..+..+++++.+.++.|.+.
T Consensus 229 ~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 229 ASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 1233 55577777766542111111233334 567788888887766433 44556778888888888765
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.57 E-value=0.0054 Score=69.05 Aligned_cols=36 Identities=31% Similarity=0.301 Sum_probs=16.0
Q ss_pred ccEEECCCCccCccc----hhhhcCCCCCCEEECCCCcCC
Q 002101 24 LKKLDLRGNLCNNSI----LSSVARLSSLTSLHLSHNILQ 59 (967)
Q Consensus 24 L~~L~Ls~~~~~~~~----~~~l~~l~~L~~L~L~~~~i~ 59 (967)
+..|+|.+|.+.... ..++....+|..|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 444455555444321 223334445555555555444
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.72 E-value=0.033 Score=53.10 Aligned_cols=82 Identities=20% Similarity=0.228 Sum_probs=49.0
Q ss_pred CccEEECCCCccCccchhhhcCCCCCCEEECCCCcCCCCCChhhh-cCCCCCCEEEcCCC-CCCccccccCccCCCCccE
Q 002101 23 KLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEF-DSLSNLEELDINDN-EIDNVEVSRGYRGLRKLKS 100 (967)
Q Consensus 23 ~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~i~~~~~-~~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~L~~ 100 (967)
.++.+|=+++.|.....+.+.+++.++.|.+.+|.-.+.--.+.+ +-.++|+.|+|++| +|++... ..+.++++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-HHHHHhhhhHH
Confidence 467788888887777677778888888888887763322111111 13456677777655 3444443 34555555555
Q ss_pred EECCC
Q 002101 101 LDLSG 105 (967)
Q Consensus 101 L~L~~ 105 (967)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 55554
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.28 E-value=0.3 Score=29.93 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=15.2
Q ss_pred CCCCCEEECCCCcCCCCCChhhhc
Q 002101 45 LSSLTSLHLSHNILQGSIDAKEFD 68 (967)
Q Consensus 45 l~~L~~L~L~~~~i~~~i~~~~~~ 68 (967)
+++|++|+|++|++. .+|..+|+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 356777777777777 56666654
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.28 E-value=0.3 Score=29.93 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=15.2
Q ss_pred CCCCCEEECCCCcCCCCCChhhhc
Q 002101 45 LSSLTSLHLSHNILQGSIDAKEFD 68 (967)
Q Consensus 45 l~~L~~L~L~~~~i~~~i~~~~~~ 68 (967)
+++|++|+|++|++. .+|..+|+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 356777777777777 56666654
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.64 E-value=0.24 Score=26.86 Aligned_cols=13 Identities=69% Similarity=0.818 Sum_probs=5.3
Q ss_pred CCCEEEccCCcCC
Q 002101 477 FLQFLDLSNNKLT 489 (967)
Q Consensus 477 ~L~~L~L~~n~l~ 489 (967)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.91 E-value=0.31 Score=29.85 Aligned_cols=14 Identities=36% Similarity=0.679 Sum_probs=6.3
Q ss_pred CCCEEECcCccccc
Q 002101 795 RIQTLNLSHNNLTG 808 (967)
Q Consensus 795 ~L~~L~Ls~N~l~~ 808 (967)
+|+.|+|++|+|+.
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00369 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 34444444444443
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.91 E-value=0.31 Score=29.85 Aligned_cols=14 Identities=36% Similarity=0.679 Sum_probs=6.3
Q ss_pred CCCEEECcCccccc
Q 002101 795 RIQTLNLSHNNLTG 808 (967)
Q Consensus 795 ~L~~L~Ls~N~l~~ 808 (967)
+|+.|+|++|+|+.
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00370 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 34444444444443
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.85 E-value=0.012 Score=56.82 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=67.4
Q ss_pred hhhcCCCccEEECCCCccCccchhhhcCCCCCCEEECCCCcCCCCCChhhhcCCCCCCEEEcCCCCCCccccccCccCCC
Q 002101 17 RLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLR 96 (967)
Q Consensus 17 ~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~ 96 (967)
.+..++.++.||++.|++-. +-..|+.++.|.+||++.|.+. ..|.++ +.+..++++++..|+..... .+++..+
T Consensus 37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~-~q~~e~~~~~~~~n~~~~~p--~s~~k~~ 111 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDA-KQQRETVNAASHKNNHSQQP--KSQKKEP 111 (326)
T ss_pred hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhH-HHHHHHHHHHhhccchhhCC--ccccccC
Confidence 35677888999999887653 3445677788888999988887 556554 88888888888888877665 5788888
Q ss_pred CccEEECCCCCC
Q 002101 97 KLKSLDLSGVGI 108 (967)
Q Consensus 97 ~L~~L~L~~~~l 108 (967)
.++++++..+.+
T Consensus 112 ~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 112 HPKKNEQKKTEF 123 (326)
T ss_pred CcchhhhccCcc
Confidence 888888888776
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.56 E-value=0.026 Score=54.77 Aligned_cols=82 Identities=23% Similarity=0.223 Sum_probs=67.0
Q ss_pred ccceEECCCCcccCCCcccccCCCCCCEEECcCccccccCcccccCCCCCCEEECcCCcCcccCCccccCCCcCCeEecC
Q 002101 771 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 850 (967)
Q Consensus 771 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 850 (967)
..+.||++.|.+. .....|.-++.|..|+++.|.+. ..|..++++..++.+++..|..+ ..|.++...+.+++++.-
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 5678888888887 45566778888888888888887 67888888888888888888887 778888888888888888
Q ss_pred CCcCc
Q 002101 851 YNNLS 855 (967)
Q Consensus 851 ~N~l~ 855 (967)
.|++.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 88754
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.94 E-value=0.21 Score=47.92 Aligned_cols=82 Identities=30% Similarity=0.340 Sum_probs=52.9
Q ss_pred CCEEEcCCCCCCccccccCccCCCCccEEECCCCCCCCCchhhhhcCC-CCcccEEeccCCccccccccchhhcCCCCCc
Q 002101 73 LEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGS-FPSLNTLHLESNNFTATLTTTQELHNFTNLE 151 (967)
Q Consensus 73 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~ 151 (967)
++.+|=+++.|...+. ..+.+++.++.|.+.+|.-.++.. .+.++. .++||.|++++|.-.+.. ....+..+++|+
T Consensus 103 IeaVDAsds~I~~eGl-e~L~~l~~i~~l~l~~ck~~dD~~-L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGL-EHLRDLRSIKSLSLANCKYFDDWC-LERLGGLAPSLQDLDLSGCPRITDG-GLACLLKLKNLR 179 (221)
T ss_pred EEEEecCCchHHHHHH-HHHhccchhhhheeccccchhhHH-HHHhcccccchheeeccCCCeechh-HHHHHHHhhhhH
Confidence 6667777777776665 567777788888887776543322 233433 578888888877644332 234566777777
Q ss_pred EEEcCC
Q 002101 152 YLTLDD 157 (967)
Q Consensus 152 ~L~L~~ 157 (967)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 777765
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=79.15 E-value=1.1 Score=26.70 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=10.4
Q ss_pred CCCcEEEcCCCCCchhhhhh
Q 002101 148 TNLEYLTLDDSSLHISLLQS 167 (967)
Q Consensus 148 ~~L~~L~L~~~~~~~~~~~~ 167 (967)
++|++|++++|.+++.....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45666666666665554443
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.63 E-value=5.3 Score=24.51 Aligned_cols=16 Identities=50% Similarity=0.900 Sum_probs=8.9
Q ss_pred CCCCEEEcCCCCCCcc
Q 002101 71 SNLEELDINDNEIDNV 86 (967)
Q Consensus 71 ~~L~~L~Ls~n~i~~~ 86 (967)
++|++|+|+.|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4556666666655433
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=60.83 E-value=42 Score=37.09 Aligned_cols=61 Identities=25% Similarity=0.130 Sum_probs=29.6
Q ss_pred CCCEEEccCCcCCCccchhHhhcC--CCCcEEEcccccccc---cccccccCCccccceeccCccc
Q 002101 477 FLQFLDLSNNKLTGEIPDHLAMCC--VNLEFLSLSNNSLKG---HIFSRIFSLRNLRWLLLEGNHF 537 (967)
Q Consensus 477 ~L~~L~L~~n~l~~~i~~~~~~~l--~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l 537 (967)
.+.+++++.|.....+|..+.... .-++.++.+...+.- ..+-.+..-++++..+++.|..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 456677777766666665433211 224455554443321 1122233345666666666554
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=60.37 E-value=6.2 Score=24.15 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=7.1
Q ss_pred CCCEEECcCCcCc
Q 002101 819 HIESLDLSYNKLS 831 (967)
Q Consensus 819 ~L~~L~Ls~N~l~ 831 (967)
+|+.|+.++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555554
No 88
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=58.63 E-value=3.5 Score=28.09 Aligned_cols=9 Identities=22% Similarity=0.608 Sum_probs=4.0
Q ss_pred hhccchhhh
Q 002101 931 LYVNPYWRR 939 (967)
Q Consensus 931 ~~~~~~~~~ 939 (967)
++++.||||
T Consensus 30 ~~l~~~~rR 38 (40)
T PF08693_consen 30 AFLFFWYRR 38 (40)
T ss_pred HHhheEEec
Confidence 334444554
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=54.39 E-value=12 Score=23.32 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=14.3
Q ss_pred CCCcEEEcCCCCCchhhhhhhh
Q 002101 148 TNLEYLTLDDSSLHISLLQSIG 169 (967)
Q Consensus 148 ~~L~~L~L~~~~~~~~~~~~l~ 169 (967)
++|++|+|++|.+.......+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 4677777777777665554443
No 90
>PF15102 TMEM154: TMEM154 protein family
Probab=50.30 E-value=10 Score=34.54 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=10.9
Q ss_pred hHHHHHHHhhhhhhhccchhhh
Q 002101 918 ISYVIVIFGIVVVLYVNPYWRR 939 (967)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~ 939 (967)
+.+++++++++++++++||||.
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHHHheeEEeeccc
Confidence 4444444444444555555655
No 91
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=43.80 E-value=12 Score=33.19 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=10.3
Q ss_pred ehhhhHHHHHHHhhhhhh-hccchhhh
Q 002101 914 ITFTISYVIVIFGIVVVL-YVNPYWRR 939 (967)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~-~~~~~~~~ 939 (967)
+++++|+++|++++++++ |+.||.|+
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444433333 33343333
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=40.67 E-value=26 Score=21.28 Aligned_cols=11 Identities=36% Similarity=0.434 Sum_probs=6.1
Q ss_pred CCCcEEEcCCC
Q 002101 148 TNLEYLTLDDS 158 (967)
Q Consensus 148 ~~L~~L~L~~~ 158 (967)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555555
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=40.17 E-value=17 Score=49.33 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=25.0
Q ss_pred ECcCccccccCcccccCCCCCCEEECcCCcCccc
Q 002101 800 NLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 833 (967)
Q Consensus 800 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 833 (967)
||++|+|+.+.+..|..+++|+.|+|++|++.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 5777777777777777777777777777777653
No 94
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=38.21 E-value=15 Score=32.17 Aligned_cols=32 Identities=25% Similarity=0.220 Sum_probs=20.6
Q ss_pred hhHHHHHHHhhhhhhhccchhhhhHHHHHHHH
Q 002101 917 TISYVIVIFGIVVVLYVNPYWRRRWLYLVEMW 948 (967)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (967)
.+++.+++.+..+..++++|.|++++-+-|++
T Consensus 106 il~il~~i~is~~~~~~yr~~r~~~~~~~~~~ 137 (139)
T PHA03099 106 IVLVLVGIIITCCLLSVYRFTRRTKLPLQDMV 137 (139)
T ss_pred HHHHHHHHHHHHHHHhhheeeecccCchhhcc
Confidence 34444555555666778888888887665543
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=38.06 E-value=28 Score=39.24 Aligned_cols=15 Identities=20% Similarity=0.016 Sum_probs=8.5
Q ss_pred CCCcEEECcCCCCCC
Q 002101 452 PSLVYFNISMNALDG 466 (967)
Q Consensus 452 ~~L~~L~l~~n~l~~ 466 (967)
..|++|-+.+|.+..
T Consensus 270 l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 270 LPLEELVLEGNPLCT 284 (585)
T ss_pred CCHHHeeecCCcccc
Confidence 355666666666543
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=34.37 E-value=28 Score=47.29 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=18.1
Q ss_pred ECCCCcccCCCcccccCCCCCCEEECcCcccc
Q 002101 776 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT 807 (967)
Q Consensus 776 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 807 (967)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 45566665444445555666666666665554
No 97
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=30.31 E-value=22 Score=29.29 Aligned_cols=29 Identities=7% Similarity=0.084 Sum_probs=17.0
Q ss_pred ceeeehhhhHHHHHHHhhhhhhhccchhh
Q 002101 910 DSFFITFTISYVIVIFGIVVVLYVNPYWR 938 (967)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (967)
.|.+++.+.|++++++++.++.+.+.+|+
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 45566666666666666555555555554
No 98
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=29.48 E-value=37 Score=35.70 Aligned_cols=13 Identities=38% Similarity=0.797 Sum_probs=6.3
Q ss_pred hhhhhhccchhhh
Q 002101 927 IVVVLYVNPYWRR 939 (967)
Q Consensus 927 ~~~~~~~~~~~~~ 939 (967)
|++++|+..|+||
T Consensus 271 IMvIIYLILRYRR 283 (299)
T PF02009_consen 271 IMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555444555
No 99
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=24.26 E-value=48 Score=37.51 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=20.4
Q ss_pred CCCCccEEECCCCCCCCCchhhhhcCCCCcccEEeccCC
Q 002101 94 GLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESN 132 (967)
Q Consensus 94 ~l~~L~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n 132 (967)
+.+.+..+.|++|++.....+...-...|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 344555555666655443333333334566666666666
No 100
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=24.15 E-value=18 Score=33.23 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=2.9
Q ss_pred eehhhhH
Q 002101 913 FITFTIS 919 (967)
Q Consensus 913 ~~~~~~~ 919 (967)
++++++|
T Consensus 51 VIGvVVG 57 (154)
T PF04478_consen 51 VIGVVVG 57 (154)
T ss_pred EEEEEec
Confidence 3444443
No 101
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=22.45 E-value=5.1e+02 Score=29.20 Aligned_cols=161 Identities=13% Similarity=-0.011 Sum_probs=84.5
Q ss_pred CCCCccccccccchhhhhcCCCccEEECCCCccCccchhhhcCC---CCCCEEECCCCcCCCC--CChhhhcCCCCCCEE
Q 002101 2 SGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARL---SSLTSLHLSHNILQGS--IDAKEFDSLSNLEEL 76 (967)
Q Consensus 2 ~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l---~~L~~L~L~~~~i~~~--i~~~~~~~l~~L~~L 76 (967)
+.|+++...+-+.+. =..-..+.++||+.|.....+|..+..+ .-++.++.+...+.-+ ..+-.++.-+.|++.
T Consensus 195 r~c~lsskfis~l~~-qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~ 273 (553)
T KOG4242|consen 195 RVCELSSKFISKLLI-QSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFG 273 (553)
T ss_pred hhhhhhhhHHHHhhh-hhccccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchh
Confidence 445555555443321 1122468899999998776666544332 4678888888877622 233344667789999
Q ss_pred EcCCCCCCccccc-------cCccCCCCccEEECCCCCCCCCc--hhhhhcCCC--CcccEEeccCCccccccccchhhc
Q 002101 77 DINDNEIDNVEVS-------RGYRGLRKLKSLDLSGVGIRDGN--KLLQSMGSF--PSLNTLHLESNNFTATLTTTQELH 145 (967)
Q Consensus 77 ~Ls~n~i~~~~~~-------~~~~~l~~L~~L~L~~~~l~~~~--~~~~~l~~l--~~L~~L~L~~n~~~~~~~~~~~l~ 145 (967)
+++.|........ +.|..=.++ +|++..++..+.. .+.-.+..- +.=-++++..|...+.. ..++-.
T Consensus 274 kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~-vleaci 351 (553)
T KOG4242|consen 274 KLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAE-VLEACI 351 (553)
T ss_pred hhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccc-hhhccc
Confidence 9988876422110 124555567 7777766542111 111111110 11123455555554332 111112
Q ss_pred CCCCCcEEEcCCCCCchhhh
Q 002101 146 NFTNLEYLTLDDSSLHISLL 165 (967)
Q Consensus 146 ~l~~L~~L~L~~~~~~~~~~ 165 (967)
+=..+++|.+.+|...+...
T Consensus 352 ~g~R~q~l~~rdnnldgeg~ 371 (553)
T KOG4242|consen 352 FGQRVQVLLQRDNNLDGEGG 371 (553)
T ss_pred cceeeeEeeccccccccccc
Confidence 22347788888777655543
No 102
>PTZ00046 rifin; Provisional
Probab=21.36 E-value=58 Score=34.93 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=9.2
Q ss_pred hhhhhhccchhhhhHH
Q 002101 927 IVVVLYVNPYWRRRWL 942 (967)
Q Consensus 927 ~~~~~~~~~~~~~~~~ 942 (967)
|++++|+..|+||++-
T Consensus 330 IMvIIYLILRYRRKKK 345 (358)
T PTZ00046 330 IMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHhhhcch
Confidence 4555666666666533
No 103
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=20.75 E-value=61 Score=34.62 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=8.9
Q ss_pred hhhhhhccchhhhhH
Q 002101 927 IVVVLYVNPYWRRRW 941 (967)
Q Consensus 927 ~~~~~~~~~~~~~~~ 941 (967)
|++++|+..|+||++
T Consensus 325 IMvIIYLILRYRRKK 339 (353)
T TIGR01477 325 IMVIIYLILRYRRKK 339 (353)
T ss_pred HHHHHHHHHHhhhcc
Confidence 455566666666653
No 104
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=20.55 E-value=77 Score=21.68 Aligned_cols=8 Identities=25% Similarity=0.771 Sum_probs=3.6
Q ss_pred ccchhhhh
Q 002101 933 VNPYWRRR 940 (967)
Q Consensus 933 ~~~~~~~~ 940 (967)
.+|+|..+
T Consensus 29 iYRKw~aR 36 (43)
T PF08114_consen 29 IYRKWQAR 36 (43)
T ss_pred HHHHHHHH
Confidence 33555443
Done!