Query 002103
Match_columns 966
No_of_seqs 131 out of 172
Neff 3.0
Searched_HMMs 46136
Date Thu Mar 28 16:34:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00395 SLH: S-layer homology 98.9 1.6E-09 3.5E-14 85.6 4.1 44 516-570 1-45 (45)
2 PF00395 SLH: S-layer homology 97.6 5.1E-05 1.1E-09 60.2 3.9 44 594-643 1-45 (45)
3 PF08317 Spc7: Spc7 kinetochor 96.4 0.28 6.2E-06 53.8 19.5 166 630-822 123-290 (325)
4 KOG0018 Structural maintenance 96.2 1.5 3.2E-05 55.4 25.6 254 683-956 226-515 (1141)
5 KOG1029 Endocytic adaptor prot 96.1 1 2.2E-05 55.2 23.0 87 709-797 399-500 (1118)
6 TIGR03185 DNA_S_dndD DNA sulfu 96.1 4.6 9.9E-05 48.3 32.4 88 698-785 229-316 (650)
7 smart00787 Spc7 Spc7 kinetocho 95.2 0.71 1.5E-05 51.2 16.3 165 630-822 118-285 (312)
8 KOG1029 Endocytic adaptor prot 95.1 6.2 0.00013 48.9 24.2 85 694-800 363-450 (1118)
9 KOG0994 Extracellular matrix g 94.7 13 0.00028 48.0 26.1 94 733-826 1463-1578(1758)
10 PF09726 Macoilin: Transmembra 94.6 6.4 0.00014 48.3 23.4 135 654-792 422-575 (697)
11 COG4942 Membrane-bound metallo 94.4 9.2 0.0002 44.6 22.8 109 703-818 147-255 (420)
12 PF12128 DUF3584: Protein of u 94.4 22 0.00048 45.9 33.0 190 683-881 716-919 (1201)
13 PF09726 Macoilin: Transmembra 94.1 10 0.00022 46.7 23.5 89 743-831 462-575 (697)
14 PRK00106 hypothetical protein; 94.1 6.8 0.00015 46.8 21.5 37 791-828 179-217 (535)
15 PRK00106 hypothetical protein; 93.8 7.5 0.00016 46.4 21.2 56 700-755 98-153 (535)
16 PRK12704 phosphodiesterase; Pr 93.6 11 0.00023 44.8 22.0 39 789-828 162-202 (520)
17 PF12072 DUF3552: Domain of un 93.6 5.9 0.00013 41.2 17.8 88 661-752 44-131 (201)
18 COG1196 Smc Chromosome segrega 92.6 28 0.00061 44.7 25.0 21 471-491 111-131 (1163)
19 KOG0161 Myosin class II heavy 92.2 60 0.0013 44.5 30.4 88 736-826 1243-1330(1930)
20 TIGR03319 YmdA_YtgF conserved 92.2 19 0.00042 42.7 21.4 96 729-828 99-196 (514)
21 PRK11637 AmiB activator; Provi 91.5 30 0.00064 39.5 24.1 43 728-770 174-216 (428)
22 PF10186 Atg14: UV radiation r 91.3 18 0.00039 38.0 18.1 33 845-877 178-211 (302)
23 PRK12704 phosphodiesterase; Pr 91.0 25 0.00053 41.9 20.6 56 698-753 81-136 (520)
24 TIGR02169 SMC_prok_A chromosom 90.9 50 0.0011 41.0 34.8 16 475-490 113-128 (1164)
25 TIGR03319 YmdA_YtgF conserved 90.5 29 0.00064 41.2 20.7 83 698-784 75-167 (514)
26 PF05667 DUF812: Protein of un 90.5 50 0.0011 40.2 28.4 32 768-799 393-424 (594)
27 KOG0980 Actin-binding protein 90.3 61 0.0013 41.2 23.5 267 660-965 424-702 (980)
28 KOG4673 Transcription factor T 90.1 59 0.0013 40.6 27.7 71 694-768 390-469 (961)
29 KOG0933 Structural maintenance 90.1 70 0.0015 41.4 30.9 71 859-929 960-1036(1174)
30 KOG4302 Microtubule-associated 90.1 46 0.001 41.1 22.1 255 675-961 37-325 (660)
31 PTZ00121 MAEBL; Provisional 90.0 42 0.00091 44.7 22.2 34 638-671 1087-1120(2084)
32 TIGR02168 SMC_prok_B chromosom 89.8 60 0.0013 40.1 34.8 12 929-940 968-979 (1179)
33 KOG0995 Centromere-associated 89.3 61 0.0013 39.5 30.4 65 687-751 289-370 (581)
34 TIGR00606 rad50 rad50. This fa 88.5 94 0.002 40.7 29.9 13 106-118 43-55 (1311)
35 TIGR01069 mutS2 MutS2 family p 88.4 4.2 9.2E-05 50.1 12.3 57 708-764 499-555 (771)
36 PF10186 Atg14: UV radiation r 87.8 38 0.00082 35.6 17.3 9 815-823 145-153 (302)
37 PTZ00121 MAEBL; Provisional 87.4 92 0.002 41.9 22.7 22 44-66 291-312 (2084)
38 KOG0579 Ste20-like serine/thre 87.3 26 0.00056 43.5 17.3 76 687-762 836-948 (1187)
39 PF05701 WEMBL: Weak chloropla 87.3 72 0.0016 37.9 22.6 114 676-789 248-364 (522)
40 PF00769 ERM: Ezrin/radixin/mo 87.1 33 0.00072 37.1 16.7 74 724-797 32-106 (246)
41 PRK11637 AmiB activator; Provi 86.9 64 0.0014 36.9 26.0 13 654-666 44-56 (428)
42 KOG0996 Structural maintenance 86.4 1.2E+02 0.0027 39.8 28.2 58 772-829 436-493 (1293)
43 PLN03188 kinesin-12 family pro 86.3 51 0.0011 43.3 20.0 120 670-792 1104-1252(1320)
44 KOG0612 Rho-associated, coiled 86.2 99 0.0021 40.7 22.1 105 689-796 498-615 (1317)
45 PF00038 Filament: Intermediat 86.2 53 0.0012 35.4 19.1 119 678-802 181-305 (312)
46 PRK02224 chromosome segregatio 86.2 95 0.0021 38.3 30.9 12 948-959 468-479 (880)
47 COG1579 Zn-ribbon protein, pos 86.1 57 0.0012 35.8 17.7 60 743-802 91-150 (239)
48 KOG3850 Predicted membrane pro 85.8 41 0.00089 39.3 17.2 57 649-708 259-315 (455)
49 PHA02562 46 endonuclease subun 85.8 76 0.0016 36.8 23.0 12 480-491 111-122 (562)
50 KOG2685 Cystoskeletal protein 85.8 35 0.00076 40.0 16.7 145 629-785 21-194 (421)
51 KOG0976 Rho/Rac1-interacting s 84.5 1.3E+02 0.0028 38.4 26.4 211 721-937 376-632 (1265)
52 TIGR00634 recN DNA repair prot 84.5 43 0.00093 39.7 17.4 148 652-803 211-373 (563)
53 PRK00409 recombination and DNA 84.5 21 0.00047 44.2 15.5 12 744-755 569-580 (782)
54 KOG0161 Myosin class II heavy 84.2 1.9E+02 0.0041 40.0 35.4 101 660-764 860-962 (1930)
55 KOG0977 Nuclear envelope prote 84.0 76 0.0016 38.6 18.9 28 768-795 203-234 (546)
56 PTZ00266 NIMA-related protein 83.7 14 0.0003 47.4 13.6 38 630-668 409-446 (1021)
57 PF07888 CALCOCO1: Calcium bin 83.3 1.2E+02 0.0026 37.0 23.8 25 535-571 97-121 (546)
58 PF12072 DUF3552: Domain of un 82.8 65 0.0014 33.7 20.5 57 731-787 89-145 (201)
59 PF04156 IncA: IncA protein; 82.8 48 0.0011 33.4 14.7 29 691-719 94-122 (191)
60 PRK12705 hypothetical protein; 82.5 1.2E+02 0.0026 36.5 20.0 14 829-842 227-240 (508)
61 COG1196 Smc Chromosome segrega 82.0 1.7E+02 0.0037 38.0 33.8 17 557-573 112-128 (1163)
62 PF08317 Spc7: Spc7 kinetochor 81.1 80 0.0017 35.2 16.9 96 684-782 137-243 (325)
63 PRK09039 hypothetical protein; 80.7 1.1E+02 0.0023 34.8 20.8 50 754-803 122-171 (343)
64 PRK04863 mukB cell division pr 80.5 1.5E+02 0.0032 40.1 21.3 43 477-543 146-188 (1486)
65 KOG0976 Rho/Rac1-interacting s 79.8 1.9E+02 0.0041 37.1 27.3 111 683-797 272-396 (1265)
66 PF10174 Cast: RIM-binding pro 79.4 1.1E+02 0.0024 38.6 18.8 169 655-829 1-204 (775)
67 KOG4286 Dystrophin-like protei 79.3 1.8E+02 0.0039 36.9 20.0 188 698-921 91-293 (966)
68 PF10473 CENP-F_leu_zip: Leuci 79.2 78 0.0017 32.3 14.6 11 655-665 8-18 (140)
69 KOG0018 Structural maintenance 79.0 63 0.0014 41.8 16.6 84 743-828 418-501 (1141)
70 PRK00409 recombination and DNA 79.0 14 0.00031 45.7 11.3 58 700-764 503-560 (782)
71 TIGR01069 mutS2 MutS2 family p 78.9 37 0.00081 42.2 14.7 47 711-757 530-577 (771)
72 PRK03918 chromosome segregatio 78.6 1.7E+02 0.0038 35.9 30.8 36 751-786 306-341 (880)
73 PRK11281 hypothetical protein; 78.4 2.3E+02 0.005 37.3 23.1 27 803-829 229-255 (1113)
74 PF09738 DUF2051: Double stran 77.9 44 0.00096 37.6 13.7 81 771-859 121-201 (302)
75 COG4372 Uncharacterized protei 77.9 1.6E+02 0.0034 35.0 20.1 81 683-768 80-160 (499)
76 TIGR03185 DNA_S_dndD DNA sulfu 77.5 1.8E+02 0.0038 35.4 27.1 97 678-783 183-279 (650)
77 TIGR02680 conserved hypothetic 76.7 2.7E+02 0.0058 37.1 29.5 14 475-488 139-152 (1353)
78 KOG0996 Structural maintenance 76.6 2.7E+02 0.0058 37.0 29.6 80 740-822 453-532 (1293)
79 PRK09039 hypothetical protein; 75.6 1.5E+02 0.0033 33.7 20.1 23 648-671 44-66 (343)
80 PF10168 Nup88: Nuclear pore c 75.6 76 0.0017 39.5 15.9 33 640-677 535-568 (717)
81 PF09730 BicD: Microtubule-ass 75.1 1.4E+02 0.0031 37.4 17.9 112 699-810 34-148 (717)
82 KOG0979 Structural maintenance 75.0 99 0.0022 40.0 16.7 144 652-798 176-333 (1072)
83 PF10146 zf-C4H2: Zinc finger- 74.6 64 0.0014 35.0 13.3 47 694-741 3-49 (230)
84 PF14362 DUF4407: Domain of un 74.3 1.4E+02 0.003 32.6 16.9 32 689-720 132-163 (301)
85 PHA02562 46 endonuclease subun 74.3 1.8E+02 0.0038 33.9 25.1 11 818-828 272-282 (562)
86 KOG4403 Cell surface glycoprot 73.9 1.2E+02 0.0026 36.3 16.0 35 788-822 341-375 (575)
87 PF05565 Sipho_Gp157: Siphovir 73.6 41 0.00089 34.1 11.1 79 743-828 3-81 (162)
88 PTZ00266 NIMA-related protein 73.2 45 0.00098 43.0 13.6 16 862-877 663-678 (1021)
89 TIGR01843 type_I_hlyD type I s 72.2 1.6E+02 0.0035 32.4 20.6 26 768-793 202-227 (423)
90 PRK12705 hypothetical protein; 72.1 1.1E+02 0.0024 36.8 15.7 61 750-815 100-160 (508)
91 KOG1899 LAR transmembrane tyro 72.0 1.1E+02 0.0024 38.0 15.5 13 652-664 106-118 (861)
92 TIGR02169 SMC_prok_A chromosom 71.8 2.7E+02 0.0059 34.9 36.4 16 557-572 110-125 (1164)
93 PF10211 Ax_dynein_light: Axon 71.8 1.4E+02 0.0029 31.4 14.8 18 674-691 81-98 (189)
94 TIGR00634 recN DNA repair prot 71.5 2E+02 0.0043 34.4 17.6 28 691-718 211-238 (563)
95 KOG1103 Predicted coiled-coil 70.9 2.2E+02 0.0047 33.5 16.8 167 658-840 119-308 (561)
96 smart00787 Spc7 Spc7 kinetocho 70.9 1.9E+02 0.0041 32.7 18.8 157 673-835 123-292 (312)
97 PF10267 Tmemb_cc2: Predicted 70.9 1.7E+02 0.0036 34.4 16.3 56 652-710 214-269 (395)
98 PF05262 Borrelia_P83: Borreli 70.8 2.2E+02 0.0047 34.4 17.5 41 524-575 75-115 (489)
99 PF03962 Mnd1: Mnd1 family; I 70.3 51 0.0011 34.4 11.1 81 710-808 87-167 (188)
100 KOG0979 Structural maintenance 69.8 3.5E+02 0.0077 35.4 24.3 62 712-778 673-734 (1072)
101 PRK10884 SH3 domain-containing 69.8 43 0.00094 35.7 10.7 24 698-721 92-115 (206)
102 KOG0977 Nuclear envelope prote 69.6 1.1E+02 0.0023 37.3 14.9 97 684-787 84-180 (546)
103 PRK03918 chromosome segregatio 68.8 2.9E+02 0.0063 34.1 35.4 18 701-718 202-219 (880)
104 PF02601 Exonuc_VII_L: Exonucl 68.4 1.9E+02 0.0041 31.7 17.1 32 683-714 156-187 (319)
105 PRK04863 mukB cell division pr 67.9 4.5E+02 0.0097 35.8 27.2 55 766-824 373-427 (1486)
106 PF04111 APG6: Autophagy prote 67.4 41 0.00088 37.7 10.3 31 712-742 52-82 (314)
107 PF09731 Mitofilin: Mitochondr 67.4 2.7E+02 0.0058 33.1 20.6 116 683-801 320-441 (582)
108 PF14643 DUF4455: Domain of un 67.0 2.6E+02 0.0057 32.9 23.5 272 689-964 11-321 (473)
109 COG1579 Zn-ribbon protein, pos 66.9 2.1E+02 0.0045 31.6 22.1 66 729-801 87-156 (239)
110 PRK02292 V-type ATP synthase s 64.9 1.7E+02 0.0036 29.9 15.4 52 722-778 61-112 (188)
111 PF10498 IFT57: Intra-flagella 64.2 1.6E+02 0.0035 33.9 14.4 43 688-730 216-258 (359)
112 KOG0982 Centrosomal protein Nu 63.7 3.3E+02 0.0071 32.8 18.2 20 635-654 245-264 (502)
113 PF12128 DUF3584: Protein of u 63.7 4.6E+02 0.01 34.5 35.4 18 559-576 218-235 (1201)
114 PF05957 DUF883: Bacterial pro 63.4 37 0.00079 31.2 7.6 47 867-913 8-54 (94)
115 KOG0995 Centromere-associated 63.3 3.7E+02 0.008 33.3 31.7 127 704-837 274-400 (581)
116 KOG4661 Hsp27-ERE-TATA-binding 63.1 30 0.00065 42.1 8.7 36 731-770 653-688 (940)
117 KOG2391 Vacuolar sorting prote 62.8 26 0.00056 40.3 7.8 42 716-757 217-258 (365)
118 PLN03188 kinesin-12 family pro 62.7 5.2E+02 0.011 34.8 27.1 99 773-904 1069-1169(1320)
119 PF10168 Nup88: Nuclear pore c 62.7 3.5E+02 0.0076 34.0 17.8 36 745-781 611-647 (717)
120 KOG4809 Rab6 GTPase-interactin 62.6 2.5E+02 0.0054 34.7 15.8 142 676-825 420-567 (654)
121 KOG0982 Centrosomal protein Nu 62.6 3.4E+02 0.0074 32.7 21.7 36 769-804 356-391 (502)
122 PF05262 Borrelia_P83: Borreli 62.5 3.5E+02 0.0076 32.8 17.3 24 597-620 120-143 (489)
123 KOG0971 Microtubule-associated 60.2 5.2E+02 0.011 33.9 26.8 40 762-801 389-428 (1243)
124 PRK10361 DNA recombination pro 59.8 3.8E+02 0.0083 32.3 23.6 49 896-945 171-222 (475)
125 PF07246 Phlebovirus_NSM: Phle 57.0 1.1E+02 0.0024 34.3 11.1 39 783-821 198-236 (264)
126 COG4942 Membrane-bound metallo 56.8 4.1E+02 0.0089 31.7 23.9 62 753-814 169-244 (420)
127 KOG2129 Uncharacterized conser 56.7 32 0.00069 40.6 7.3 64 781-863 184-247 (552)
128 PRK06569 F0F1 ATP synthase sub 56.6 87 0.0019 32.4 9.6 50 703-754 66-116 (155)
129 KOG2129 Uncharacterized conser 56.5 3.4E+02 0.0073 32.7 15.2 61 733-793 259-319 (552)
130 TIGR00606 rad50 rad50. This fa 56.0 6.2E+02 0.014 33.6 34.7 24 736-759 794-817 (1311)
131 TIGR03545 conserved hypothetic 55.2 66 0.0014 38.9 9.9 52 730-781 208-259 (555)
132 COG2433 Uncharacterized conser 54.3 1.3E+02 0.0028 37.3 11.9 33 764-796 476-508 (652)
133 PRK04778 septation ring format 54.2 4.7E+02 0.01 31.6 32.0 108 677-785 282-399 (569)
134 PF01991 vATP-synt_E: ATP synt 54.2 2.4E+02 0.0052 28.2 14.9 80 678-761 13-92 (198)
135 TIGR03007 pepcterm_ChnLen poly 54.1 4.1E+02 0.0088 30.8 21.9 38 743-780 256-293 (498)
136 TIGR03545 conserved hypothetic 53.7 1.4E+02 0.003 36.3 12.1 61 740-800 190-250 (555)
137 KOG4691 Uncharacterized conser 53.6 1.3E+02 0.0028 32.7 10.6 45 653-702 80-131 (227)
138 KOG0239 Kinesin (KAR3 subfamil 53.5 5.5E+02 0.012 32.2 18.0 69 751-822 244-312 (670)
139 PRK00247 putative inner membra 53.3 1.2E+02 0.0025 36.0 11.1 59 770-828 321-381 (429)
140 smart00502 BBC B-Box C-termina 53.1 1.8E+02 0.0039 26.5 10.7 79 860-938 13-91 (127)
141 PF00521 DNA_topoisoIV: DNA gy 52.9 3.4E+02 0.0074 31.6 14.7 50 752-808 375-424 (426)
142 KOG0241 Kinesin-like protein [ 52.8 1E+02 0.0022 40.0 11.0 77 742-838 365-445 (1714)
143 PF05911 DUF869: Plant protein 52.7 6.1E+02 0.013 32.4 18.0 23 859-881 253-275 (769)
144 PF07464 ApoLp-III: Apolipopho 52.6 86 0.0019 32.3 8.9 102 860-961 37-145 (155)
145 PF00038 Filament: Intermediat 52.3 3.4E+02 0.0074 29.4 26.5 70 684-753 46-115 (312)
146 PF07926 TPR_MLP1_2: TPR/MLP1/ 51.7 2.5E+02 0.0053 27.6 17.2 81 707-787 39-119 (132)
147 PF09731 Mitofilin: Mitochondr 51.7 4.9E+02 0.011 31.1 23.2 33 867-899 469-507 (582)
148 PRK10361 DNA recombination pro 51.3 5.2E+02 0.011 31.3 19.9 42 769-810 147-188 (475)
149 PF10146 zf-C4H2: Zinc finger- 50.5 3.7E+02 0.0081 29.4 14.9 88 721-826 12-99 (230)
150 cd07671 F-BAR_PSTPIP1 The F-BA 50.5 2.5E+02 0.0055 30.5 12.4 96 724-830 22-118 (242)
151 PF14362 DUF4407: Domain of un 49.7 3.8E+02 0.0083 29.3 14.3 18 783-800 196-213 (301)
152 PF07780 Spb1_C: Spb1 C-termin 49.6 1E+02 0.0022 33.6 9.2 94 590-712 64-164 (215)
153 PF02841 GBP_C: Guanylate-bind 49.5 2.2E+02 0.0049 31.2 12.1 15 479-493 36-50 (297)
154 PF05701 WEMBL: Weak chloropla 49.5 5.4E+02 0.012 30.9 32.3 158 636-804 156-330 (522)
155 PF15642 Tox-ODYAM1: Toxin in 49.1 99 0.0021 35.1 9.2 77 677-759 89-166 (385)
156 KOG0243 Kinesin-like protein [ 49.1 7.8E+02 0.017 32.6 25.8 24 883-906 625-648 (1041)
157 PF14992 TMCO5: TMCO5 family 48.8 2.8E+02 0.0061 31.4 12.7 92 715-806 54-153 (280)
158 KOG0249 LAR-interacting protei 48.3 5E+02 0.011 33.3 15.4 56 745-800 195-250 (916)
159 KOG2412 Nuclear-export-signal 47.9 5.8E+02 0.013 31.6 15.7 71 734-805 183-256 (591)
160 PF04576 Zein-binding: Zein-bi 47.6 2.7E+02 0.0059 27.1 10.7 40 752-793 55-94 (94)
161 PF00769 ERM: Ezrin/radixin/mo 47.2 4.1E+02 0.009 29.0 15.0 74 708-798 45-118 (246)
162 KOG0288 WD40 repeat protein Ti 46.8 3.3E+02 0.0072 32.6 13.2 88 651-743 28-116 (459)
163 PF08647 BRE1: BRE1 E3 ubiquit 46.2 2.6E+02 0.0057 26.4 12.7 75 656-732 2-80 (96)
164 TIGR02231 conserved hypothetic 45.8 1.2E+02 0.0026 35.6 10.0 39 771-809 129-167 (525)
165 COG0419 SbcC ATPase involved i 45.6 7.5E+02 0.016 31.5 32.7 33 741-773 277-309 (908)
166 PF10473 CENP-F_leu_zip: Leuci 45.4 3.6E+02 0.0077 27.7 16.6 95 693-791 11-105 (140)
167 KOG0999 Microtubule-associated 45.4 7.1E+02 0.015 31.2 22.3 78 699-779 107-190 (772)
168 PLN03229 acetyl-coenzyme A car 45.1 3.9E+02 0.0085 34.0 14.2 20 768-787 648-667 (762)
169 PF04478 Mid2: Mid2 like cell 45.1 7.1 0.00015 40.2 0.0 17 90-106 48-64 (154)
170 PF03962 Mnd1: Mnd1 family; I 44.7 3.2E+02 0.007 28.7 11.8 48 774-828 108-155 (188)
171 KOG2010 Double stranded RNA bi 44.2 2.3E+02 0.0049 33.1 11.2 87 748-841 122-219 (405)
172 KOG0250 DNA repair protein RAD 43.3 9.5E+02 0.02 32.0 24.0 180 650-829 255-443 (1074)
173 PF07352 Phage_Mu_Gam: Bacteri 42.5 1.2E+02 0.0027 30.2 8.1 98 772-876 6-103 (149)
174 KOG0612 Rho-associated, coiled 42.4 1E+03 0.022 32.2 24.5 46 713-758 511-556 (1317)
175 cd07649 F-BAR_GAS7 The F-BAR ( 42.1 4.8E+02 0.01 28.3 19.9 41 660-701 65-105 (233)
176 PF15290 Syntaphilin: Golgi-lo 41.7 89 0.0019 35.4 7.5 62 757-825 63-124 (305)
177 KOG0964 Structural maintenance 40.3 1E+03 0.023 31.6 26.5 128 660-788 665-804 (1200)
178 KOG2751 Beclin-like protein [S 40.1 5.4E+02 0.012 31.0 13.6 24 633-656 104-127 (447)
179 KOG1854 Mitochondrial inner me 40.1 6.4E+02 0.014 31.7 14.7 15 704-718 379-393 (657)
180 PF13870 DUF4201: Domain of un 39.9 3.9E+02 0.0085 27.2 11.3 48 708-755 44-91 (177)
181 TIGR01843 type_I_hlyD type I s 39.7 5.6E+02 0.012 28.3 21.3 11 655-665 86-96 (423)
182 KOG4429 Uncharacterized conser 39.7 4E+02 0.0087 30.8 12.1 26 688-713 50-81 (421)
183 PF11932 DUF3450: Protein of u 39.7 5.1E+02 0.011 27.8 16.0 114 666-780 24-142 (251)
184 PRK03963 V-type ATP synthase s 39.4 4.4E+02 0.0095 27.0 16.0 68 703-776 44-111 (198)
185 KOG0978 E3 ubiquitin ligase in 39.2 9.2E+02 0.02 30.7 23.3 100 700-803 459-558 (698)
186 PF10481 CENP-F_N: Cenp-F N-te 39.1 3.4E+02 0.0074 31.0 11.4 66 734-799 63-132 (307)
187 KOG4403 Cell surface glycoprot 38.9 3.2E+02 0.007 33.0 11.6 62 854-918 354-422 (575)
188 COG2433 Uncharacterized conser 38.7 4.3E+02 0.0092 33.1 12.9 61 473-571 269-329 (652)
189 PF06637 PV-1: PV-1 protein (P 38.5 4.1E+02 0.0089 31.6 12.3 67 730-800 321-387 (442)
190 PF06637 PV-1: PV-1 protein (P 38.5 5.6E+02 0.012 30.6 13.3 44 703-746 321-364 (442)
191 KOG0163 Myosin class VI heavy 38.4 6.5E+02 0.014 32.6 14.5 61 703-768 900-960 (1259)
192 cd07683 F-BAR_srGAP1 The F-BAR 38.4 6.2E+02 0.014 28.5 14.7 119 683-803 21-147 (253)
193 COG1318 Predicted transcriptio 37.7 2E+02 0.0044 30.8 9.0 100 633-742 38-155 (182)
194 PF08614 ATG16: Autophagy prot 37.6 2.1E+02 0.0045 29.7 9.1 18 798-815 155-172 (194)
195 TIGR02680 conserved hypothetic 37.4 1.2E+03 0.026 31.5 32.6 13 560-572 139-151 (1353)
196 PF08826 DMPK_coil: DMPK coile 37.2 3.1E+02 0.0067 24.7 8.8 56 661-720 5-60 (61)
197 cd07651 F-BAR_PombeCdc15_like 37.0 5.3E+02 0.012 27.3 19.8 140 662-825 67-206 (236)
198 KOG2891 Surface glycoprotein [ 36.9 7.2E+02 0.016 28.7 16.9 54 766-823 390-443 (445)
199 PRK10884 SH3 domain-containing 36.9 1.8E+02 0.0038 31.2 8.6 13 709-721 96-108 (206)
200 KOG2264 Exostosin EXT1L [Signa 36.8 1.6E+02 0.0034 36.5 9.0 27 769-795 114-140 (907)
201 KOG1103 Predicted coiled-coil 36.0 1.9E+02 0.0041 33.9 9.1 50 676-725 209-264 (561)
202 PF06428 Sec2p: GDP/GTP exchan 35.8 87 0.0019 30.3 5.6 61 693-753 2-66 (100)
203 PF07888 CALCOCO1: Calcium bin 35.7 9.4E+02 0.02 29.8 30.1 40 683-723 170-209 (546)
204 KOG2391 Vacuolar sorting prote 35.7 1.2E+02 0.0025 35.3 7.4 11 798-808 268-278 (365)
205 PF05335 DUF745: Protein of un 35.0 5.9E+02 0.013 27.2 12.7 93 734-826 60-152 (188)
206 PF12777 MT: Microtubule-bindi 34.8 2.5E+02 0.0055 31.6 9.9 56 737-792 25-80 (344)
207 PF04094 DUF390: Protein of un 34.7 3.2E+02 0.0069 34.7 11.2 78 728-815 393-485 (828)
208 COG4575 ElaB Uncharacterized c 34.7 1.2E+02 0.0026 29.9 6.4 63 889-951 11-73 (104)
209 PF15070 GOLGA2L5: Putative go 34.3 1E+03 0.022 29.7 19.9 15 882-896 406-420 (617)
210 PF07096 DUF1358: Protein of u 34.2 18 0.00038 36.3 0.8 44 78-122 13-56 (124)
211 KOG0163 Myosin class VI heavy 34.1 1E+03 0.022 31.1 15.1 35 344-378 531-569 (1259)
212 PF00816 Histone_HNS: H-NS his 33.8 40 0.00086 30.9 3.0 53 806-858 12-81 (93)
213 PRK11519 tyrosine kinase; Prov 33.3 1E+03 0.023 29.5 17.2 17 630-646 233-249 (719)
214 COG0419 SbcC ATPase involved i 32.9 1.1E+03 0.025 29.9 32.6 60 768-828 276-335 (908)
215 KOG3612 PHD Zn-finger protein 32.8 3.6E+02 0.0078 33.3 11.0 61 682-758 438-499 (588)
216 COG1340 Uncharacterized archae 32.7 8.1E+02 0.018 28.1 21.8 125 648-793 105-238 (294)
217 KOG1265 Phospholipase C [Lipid 32.7 4.4E+02 0.0095 34.5 12.0 42 692-733 1114-1155(1189)
218 KOG0971 Microtubule-associated 32.6 1.3E+03 0.029 30.6 21.3 25 769-793 325-349 (1243)
219 KOG0239 Kinesin (KAR3 subfamil 32.3 1.1E+03 0.024 29.6 16.8 22 883-904 416-437 (670)
220 TIGR01005 eps_transp_fam exopo 32.3 1.1E+03 0.023 29.3 19.2 136 653-793 240-400 (754)
221 PF00210 Ferritin: Ferritin-li 31.9 4.1E+02 0.0088 24.4 10.1 130 771-910 1-140 (142)
222 PF07111 HCR: Alpha helical co 31.8 1.2E+03 0.026 29.8 20.3 100 646-754 129-231 (739)
223 cd00187 TOP4c DNA Topoisomeras 31.8 7.7E+02 0.017 29.4 13.4 49 753-802 390-438 (445)
224 PRK10404 hypothetical protein; 31.6 2.2E+02 0.0048 27.5 7.6 58 855-912 3-60 (101)
225 KOG1854 Mitochondrial inner me 31.4 1.1E+03 0.023 29.9 14.7 21 855-875 586-606 (657)
226 PRK10869 recombination and rep 31.2 1E+03 0.022 28.9 16.9 85 691-775 207-302 (553)
227 KOG3540 Beta amyloid precursor 31.0 4.5E+02 0.0098 32.2 11.3 30 776-805 381-410 (615)
228 KOG0962 DNA repair protein RAD 30.9 1.5E+03 0.033 30.8 17.2 124 684-811 303-440 (1294)
229 PF03148 Tektin: Tektin family 30.7 8.9E+02 0.019 28.0 23.7 84 842-931 194-277 (384)
230 PRK15396 murein lipoprotein; P 30.7 1.8E+02 0.0039 27.2 6.6 44 770-817 26-69 (78)
231 PF09537 DUF2383: Domain of un 30.4 2E+02 0.0044 26.6 7.0 98 860-965 7-106 (111)
232 PTZ00491 major vault protein; 30.1 4.9E+02 0.011 33.6 12.0 34 706-740 745-778 (850)
233 KOG4661 Hsp27-ERE-TATA-binding 30.0 5.6E+02 0.012 32.1 11.9 25 119-148 82-106 (940)
234 KOG0994 Extracellular matrix g 29.8 1.6E+03 0.035 30.7 30.6 99 701-802 1470-1575(1758)
235 PF13945 NST1: Salt tolerance 29.7 1.8E+02 0.004 31.1 7.3 69 684-757 105-175 (190)
236 KOG3809 Microtubule-binding pr 29.7 6.9E+02 0.015 30.4 12.3 67 709-775 510-580 (583)
237 PF10191 COG7: Golgi complex c 29.6 3.4E+02 0.0074 34.1 10.7 114 839-958 4-125 (766)
238 cd07653 F-BAR_CIP4-like The F- 29.6 6.9E+02 0.015 26.4 16.6 27 684-710 22-48 (251)
239 PF04728 LPP: Lipoprotein leuc 29.4 2.4E+02 0.0053 25.2 6.8 44 770-817 4-47 (56)
240 TIGR01000 bacteriocin_acc bact 29.3 9.6E+02 0.021 27.9 21.0 16 653-668 107-122 (457)
241 PF03938 OmpH: Outer membrane 29.2 5.5E+02 0.012 25.1 13.2 51 743-795 52-102 (158)
242 TIGR01000 bacteriocin_acc bact 28.9 9.7E+02 0.021 27.9 24.1 35 630-668 74-108 (457)
243 PRK10404 hypothetical protein; 28.9 5.4E+02 0.012 24.9 10.4 52 867-918 8-59 (101)
244 PF03999 MAP65_ASE1: Microtubu 28.5 7.6E+02 0.016 30.2 13.0 91 648-743 262-362 (619)
245 KOG0240 Kinesin (SMY1 subfamil 28.3 1.3E+03 0.028 29.0 18.5 30 735-764 436-465 (607)
246 PRK05689 fliJ flagellar biosyn 28.2 5.8E+02 0.012 25.0 16.2 74 727-800 23-102 (147)
247 PF08703 PLC-beta_C: PLC-beta 28.0 4.8E+02 0.01 28.0 9.9 45 692-736 91-135 (185)
248 KOG1772 Vacuolar H+-ATPase V1 27.9 5.8E+02 0.012 25.6 9.7 51 708-760 37-87 (108)
249 PF03961 DUF342: Protein of un 27.8 4.3E+02 0.0093 30.8 10.5 37 721-757 372-408 (451)
250 PLN02372 violaxanthin de-epoxi 27.7 6.1E+02 0.013 30.5 11.5 77 659-752 363-443 (455)
251 PF12126 DUF3583: Protein of u 27.7 7.9E+02 0.017 28.5 12.0 50 748-803 60-121 (324)
252 PF07798 DUF1640: Protein of u 27.6 6.9E+02 0.015 25.7 16.7 20 762-781 109-128 (177)
253 KOG2896 UV radiation resistanc 26.7 1.1E+03 0.025 27.9 13.7 103 724-826 52-170 (377)
254 smart00434 TOP4c DNA Topoisome 26.4 4.5E+02 0.0097 31.2 10.4 45 751-796 398-442 (445)
255 PRK01156 chromosome segregatio 26.4 1.4E+03 0.03 28.8 20.9 148 679-829 589-740 (895)
256 PRK13182 racA polar chromosome 26.1 3.7E+02 0.008 28.3 8.7 86 683-771 40-148 (175)
257 TIGR01061 parC_Gpos DNA topois 26.1 9.4E+02 0.02 30.5 13.5 57 751-808 410-466 (738)
258 PRK06800 fliH flagellar assemb 25.9 4.9E+02 0.011 28.5 9.5 44 776-829 55-98 (228)
259 PF12325 TMF_TATA_bd: TATA ele 25.9 6.8E+02 0.015 25.0 11.3 37 721-757 48-84 (120)
260 TIGR00293 prefoldin, archaeal 25.7 6E+02 0.013 24.3 9.8 26 850-875 71-96 (126)
261 KOG2398 Predicted proline-seri 25.5 1.4E+03 0.03 28.6 17.2 196 684-915 9-204 (611)
262 PF01102 Glycophorin_A: Glycop 25.5 23 0.00051 35.2 0.0 34 96-132 68-101 (122)
263 KOG0963 Transcription factor/C 25.0 1.5E+03 0.032 28.7 17.6 136 657-808 174-318 (629)
264 cd07652 F-BAR_Rgd1 The F-BAR ( 24.9 8.9E+02 0.019 26.1 14.3 43 783-828 93-135 (234)
265 PF06717 DUF1202: Protein of u 24.9 9.1E+02 0.02 27.9 11.8 33 777-809 273-305 (308)
266 TIGR00570 cdk7 CDK-activating 24.9 1.1E+03 0.024 27.2 13.6 22 649-670 112-133 (309)
267 PF05667 DUF812: Protein of un 24.7 1.4E+03 0.031 28.4 18.8 31 456-486 71-103 (594)
268 PF05917 DUF874: Helicobacter 24.7 4.1E+02 0.009 30.7 9.2 44 756-799 170-213 (398)
269 COG3264 Small-conductance mech 24.3 6.7E+02 0.015 32.4 11.8 18 815-832 202-219 (835)
270 COG4877 Uncharacterized protei 23.9 75 0.0016 28.7 2.8 34 792-825 11-45 (63)
271 PF05010 TACC: Transforming ac 23.9 9.6E+02 0.021 26.1 19.2 51 745-802 115-169 (207)
272 PRK10807 paraquat-inducible pr 23.9 5.2E+02 0.011 31.4 10.5 78 857-944 413-491 (547)
273 KOG0517 Beta-spectrin [Cytoske 23.8 2.4E+03 0.052 30.7 28.1 208 653-900 1312-1548(2473)
274 PF04624 Dec-1: Dec-1 repeat; 23.8 82 0.0018 24.5 2.6 14 803-816 9-22 (27)
275 PRK05560 DNA gyrase subunit A; 23.5 1.2E+03 0.026 29.8 13.7 53 751-804 413-465 (805)
276 TIGR03007 pepcterm_ChnLen poly 23.5 1.2E+03 0.026 27.1 15.9 27 777-803 349-375 (498)
277 PHA02940 hypothetical protein; 23.4 4E+02 0.0088 30.2 8.7 88 743-833 9-96 (315)
278 KOG4572 Predicted DNA-binding 23.2 1.8E+03 0.04 29.1 15.2 72 686-757 962-1043(1424)
279 PF03980 Nnf1: Nnf1 ; InterPr 23.1 6.4E+02 0.014 23.8 12.5 45 681-726 6-50 (109)
280 PF09304 Cortex-I_coil: Cortex 23.1 7.7E+02 0.017 24.7 11.0 27 738-764 55-81 (107)
281 PF06098 Radial_spoke_3: Radia 23.0 1.1E+03 0.023 27.0 12.0 70 690-771 124-193 (291)
282 COG4768 Uncharacterized protei 23.0 6.7E+02 0.014 26.1 9.4 43 855-898 43-85 (139)
283 PF05622 HOOK: HOOK protein; 22.8 28 0.00061 42.4 0.0 16 654-669 456-471 (713)
284 TIGR03752 conj_TIGR03752 integ 22.7 5.3E+02 0.012 31.3 10.0 75 655-760 71-145 (472)
285 PRK14011 prefoldin subunit alp 22.6 8.5E+02 0.018 25.0 12.6 127 769-910 3-133 (144)
286 PF05837 CENP-H: Centromere pr 22.6 5.9E+02 0.013 24.5 8.7 30 783-812 58-99 (106)
287 PF13851 GAS: Growth-arrest sp 22.4 9.5E+02 0.021 25.5 15.0 59 692-750 34-95 (201)
288 KOG3759 Uncharacterized RUN do 22.4 3.5E+02 0.0075 33.0 8.4 114 659-779 66-194 (621)
289 cd08779 Death_PIDD Death Domai 22.3 1E+02 0.0022 28.5 3.4 33 794-826 41-76 (86)
290 PTZ00421 coronin; Provisional 22.1 1.3E+02 0.0029 35.5 5.2 33 768-801 452-484 (493)
291 cd02684 MIT_2 MIT: domain cont 22.1 4.2E+02 0.0091 24.1 7.2 55 862-918 2-68 (75)
292 COG1510 Predicted transcriptio 21.9 3.4E+02 0.0075 29.0 7.5 38 629-670 34-73 (177)
293 PF07111 HCR: Alpha helical co 21.9 1.8E+03 0.038 28.5 31.5 174 710-911 137-331 (739)
294 cd07658 F-BAR_NOSTRIN The F-BA 21.9 1E+03 0.022 25.7 20.7 30 678-708 85-115 (239)
295 COG1322 Predicted nuclease of 21.9 1.4E+03 0.031 27.4 18.8 112 703-826 95-211 (448)
296 COG4372 Uncharacterized protei 21.8 1.5E+03 0.032 27.5 23.8 88 698-785 122-212 (499)
297 KOG4466 Component of histone d 21.6 1.3E+03 0.028 26.7 13.2 93 686-793 29-122 (291)
298 KOG4010 Coiled-coil protein TP 21.5 2.8E+02 0.0061 30.1 6.8 60 633-692 26-99 (208)
299 PRK10132 hypothetical protein; 21.3 4.6E+02 0.01 25.7 7.8 69 888-957 14-82 (108)
300 PRK10930 FtsH protease regulat 21.2 6.4E+02 0.014 29.8 10.3 16 671-686 290-305 (419)
301 PRK10780 periplasmic chaperone 21.2 8.7E+02 0.019 24.6 13.0 32 703-734 47-78 (165)
302 KOG2264 Exostosin EXT1L [Signa 21.2 3.3E+02 0.0071 34.0 8.0 62 768-839 99-160 (907)
303 PF00901 Orbi_VP5: Orbivirus o 21.1 1.6E+03 0.035 27.7 13.6 108 691-800 97-207 (508)
304 PRK01558 V-type ATP synthase s 20.9 9.9E+02 0.021 25.1 13.7 38 821-863 139-176 (198)
305 PF04568 IATP: Mitochondrial A 20.8 1.5E+02 0.0033 28.8 4.4 15 738-752 69-83 (100)
306 PF13747 DUF4164: Domain of un 20.7 5.5E+02 0.012 24.3 7.9 56 769-825 15-70 (89)
307 PRK14472 F0F1 ATP synthase sub 20.7 9.1E+02 0.02 24.6 16.8 38 742-779 130-171 (175)
308 PHA02592 52 DNA topisomerase I 20.7 9.6E+02 0.021 28.7 11.6 49 751-808 385-433 (439)
309 KOG2751 Beclin-like protein [S 20.7 1.5E+03 0.032 27.5 12.9 15 830-844 273-287 (447)
310 PF02841 GBP_C: Guanylate-bind 20.5 1.2E+03 0.025 25.8 16.2 14 478-491 4-17 (297)
No 1
>PF00395 SLH: S-layer homology domain; InterPro: IPR001119 S-layers are paracrystalline mono-layered assemblies of (glyco)proteins which coat the surface of bacteria [, ]. Several S-layer proteins and some other cell wall proteins contain one or more copies of a domain of about 50-60 residues, which has been called SLH (for S-layer homology). Although it was originally proposed that SLH domains bind to peptidoglycan, it is now evident that pyruvylated secondary cell wall polymers (SCWPs), which are either teichoic acids, teichuronic acids, lipoteichoic acids or lipoglycans, serve as the anchoring structures for SLH motifs in the Gram-positive cell wall [, ]. However, the study of S-layer protein SbpA of Bacillus sphaericus revealed that SLH motifs are not sufficient for specific binding to SCWPs. Thus, the molecular basis explaining SLH affinity and specificity of interaction with cell wall polymers are not completely elucidated [].; PDB: 3PYW_A.
Probab=98.88 E-value=1.6e-09 Score=85.56 Aligned_cols=44 Identities=27% Similarity=0.430 Sum_probs=31.6
Q ss_pred CccCCCCCCCCh-HHHHHHHHcCCcccCcccccCCCCCCCCCccCCCCcCcHHHHH
Q 002103 516 AFDDITPEDPDF-SSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLV 570 (966)
Q Consensus 516 aF~DVppsDPDF-~yIQaAAEAGII~GkLSG~~~~s~ddG~~tFrPD~PITRQELA 570 (966)
.|+||+..+|+| .+|+.|++.|||.|+.+ ++|+|+++|||+|||
T Consensus 1 ~F~Dv~~~~~~~a~~i~~~~~~gi~~G~~~-----------~~f~P~~~iTR~e~A 45 (45)
T PF00395_consen 1 PFKDVPSISWAYAEAIQWLYQLGIISGYSD-----------GTFNPNDPITRAEAA 45 (45)
T ss_dssp -BTTB-TTSSSTTHHHHHHHHTTSS---TT-----------S---TTSB-BHHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHcCCcccCCC-----------CeECCCCCcCHHHhC
Confidence 499999999965 99999999999999853 379999999999986
No 2
>PF00395 SLH: S-layer homology domain; InterPro: IPR001119 S-layers are paracrystalline mono-layered assemblies of (glyco)proteins which coat the surface of bacteria [, ]. Several S-layer proteins and some other cell wall proteins contain one or more copies of a domain of about 50-60 residues, which has been called SLH (for S-layer homology). Although it was originally proposed that SLH domains bind to peptidoglycan, it is now evident that pyruvylated secondary cell wall polymers (SCWPs), which are either teichoic acids, teichuronic acids, lipoteichoic acids or lipoglycans, serve as the anchoring structures for SLH motifs in the Gram-positive cell wall [, ]. However, the study of S-layer protein SbpA of Bacillus sphaericus revealed that SLH motifs are not sufficient for specific binding to SCWPs. Thus, the molecular basis explaining SLH affinity and specificity of interaction with cell wall polymers are not completely elucidated [].; PDB: 3PYW_A.
Probab=97.65 E-value=5.1e-05 Score=60.16 Aligned_cols=44 Identities=34% Similarity=0.392 Sum_probs=27.3
Q ss_pred cccccCCCCc-ccHHHHHHHHhcccccceecccCCCCccCCCCCCcHHHHH
Q 002103 594 GFIDIDKINP-DAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAA 643 (966)
Q Consensus 594 gF~D~dkI~~-~A~~AV~aDL~aGDqgIIr~vFG~T~~FQPnKPVTRAEAA 643 (966)
.|.|+..+++ |+ .+|...+.. |||.+. ..+.|+|++++||+|+|
T Consensus 1 ~F~Dv~~~~~~~a-~~i~~~~~~---gi~~G~--~~~~f~P~~~iTR~e~A 45 (45)
T PF00395_consen 1 PFKDVPSISWAYA-EAIQWLYQL---GIISGY--SDGTFNPNDPITRAEAA 45 (45)
T ss_dssp -BTTB-TTSSSTT-HHHHHHHHT---TSS-----TTS---TTSB-BHHHHH
T ss_pred CCCCCCCCcHHHH-HHHHHHHHc---CCcccC--CCCeECCCCCcCHHHhC
Confidence 3899999988 66 777655443 577553 25679999999999997
No 3
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.43 E-value=0.28 Score=53.83 Aligned_cols=166 Identities=24% Similarity=0.255 Sum_probs=102.1
Q ss_pred ccCCCCCCcHHHHHHHHH--hccchhhHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002103 630 LFQPDKPVTNAQAAVALA--IGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKM 707 (966)
Q Consensus 630 ~FQPnKPVTRAEAAAaL~--~G~~~e~v~eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~ 707 (966)
.|+=-|..+|.+|-.+.| +-.+-+++.+.|.+--..=..+.+.. . +.+..=.+....+...
T Consensus 123 q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L------~-----------~~~~~l~~~~~~l~~~ 185 (325)
T PF08317_consen 123 QFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKL------D-----------KQLEQLDELLPKLRER 185 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-----------HHHHHHHHHHHHHHHH
Confidence 466667778888877765 77777777777654332221111111 0 0001111122223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHH
Q 002103 708 AEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIAR 787 (966)
Q Consensus 708 ~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~ 787 (966)
+.....|+.+++....+ .=.|-.+.|..||.|+.++-..|...|-++..=+..++.+..+++.-.+.+.+
T Consensus 186 ~~~L~~e~~~Lk~~~~e----------~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~ 255 (325)
T PF08317_consen 186 KAELEEELENLKQLVEE----------IESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQE 255 (325)
T ss_pred HHHHHHHHHHHHHHHhh----------hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444432221 12377788888888888888888877777777777777777777666666666
Q ss_pred HhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002103 788 LQYELEVERKALSMARAWAEDEAKRAREQAKALEG 822 (966)
Q Consensus 788 ~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEe 822 (966)
++.++..=.+-+.--|.|-..|..+-+++-+.||.
T Consensus 256 l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 256 LLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 66666554555556789999999999999999997
No 4
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.22 E-value=1.5 Score=55.40 Aligned_cols=254 Identities=20% Similarity=0.246 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcce
Q 002103 683 EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKV 762 (966)
Q Consensus 683 ~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kv 762 (966)
+.+| +-..++++....-+-.++.-....-.+++..+ ++....+++-+.++.. +......|-+ ...|..=++
T Consensus 226 E~~i-~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k----~e~~ki~re~~~~Dk~---i~~ke~~l~e-rp~li~~ke 296 (1141)
T KOG0018|consen 226 EACI-EKANDELSRLNAEIPKLKERMDKKEREIRVRK----KERGKIRRELQKVDKK---ISEKEEKLAE-RPELIKVKE 296 (1141)
T ss_pred hhhH-hhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHhh-hhHHhhcch
Confidence 3444 24445555555444444444433333333333 4445566666666543 2333334444 456788888
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHhHHHHHHHHHH-HH---HHHHHHhhHHhhcCcEEE
Q 002103 763 EISYEKERINMLRKEAENENQEIARLQYELEVER---KALSMARAWAEDEAKRARE-QA---KALEGARDRWERQGIKVV 835 (966)
Q Consensus 763 ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ek---kAL~maR~WaEdEA~r~~e-~A---~vLEea~~rW~~~gikv~ 835 (966)
.+...+.+|.+..++++.........+.+++..+ +|+.-++.-.|+|-++.+. +- ..++.+.+-+.
T Consensus 297 ~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~------- 369 (1141)
T KOG0018|consen 297 NASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYE------- 369 (1141)
T ss_pred hhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHH-------
Confidence 9999999999999999999999999998877654 4555555555555433221 11 01111111111
Q ss_pred EcCCccccccc-------cchhhhcccccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002103 836 VDKDLREESDA-------AVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASK 908 (966)
Q Consensus 836 vd~~~~~~~~~-------~~~w~~~~~~~~~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~ 908 (966)
.|.+++.. ..-----+++-.++.+.+|-..|-.+++.+...| .++..-++.+..+|-++...+.+....
T Consensus 370 ---rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sv-er~~~~~~~L~~~i~s~~~~~~e~~~d 445 (1141)
T KOG0018|consen 370 ---RLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESV-ERLDKRRNKLAAKITSLSRSYEELKHD 445 (1141)
T ss_pred ---HHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 12222221 1111223445566666777777777887777766 344444444555555444444333332
Q ss_pred HhhHH---------------------HHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccch-hhhhhhhhh
Q 002103 909 ASMRA---------------------AELKDATILKAKGSVQELQQSTAEFRSNLTEGAK-RVAGDCREG 956 (966)
Q Consensus 909 ~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-r~~~~c~~g 956 (966)
...-. +.+.|+++-...++=+...+.+.+.=-...-|.+ ||.|.|+--
T Consensus 446 ~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~eave~lKr~fPgv~GrviDLc~pt 515 (1141)
T KOG0018|consen 446 LDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHEGSRRSRKQEAVEALKRLFPGVYGRVIDLCQPT 515 (1141)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHhCCCccchhhhccccc
Confidence 22111 3344444444444444444444454455566777 899999753
No 5
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=1 Score=55.22 Aligned_cols=87 Identities=26% Similarity=0.344 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHH
Q 002103 709 EEARQELERLRA---------------EREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINM 773 (966)
Q Consensus 709 eea~~eLe~~r~---------------ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~k 773 (966)
|.|+.|||+.|. .||+|-+.++|+|- ..=.+.|.-|...+....++|.--|+.|-.-|..|+.
T Consensus 399 Eaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~--~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~ 476 (1118)
T KOG1029|consen 399 EAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKK--KQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEE 476 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHH
Confidence 456667766553 23444444444442 2333456666666777777777788888888888888
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 002103 774 LRKEAENENQEIARLQYELEVERK 797 (966)
Q Consensus 774 L~~~~e~~~q~i~~~k~~LE~Ekk 797 (966)
+.+.++...-+|.+||..|.-=-+
T Consensus 477 ~~~q~e~~isei~qlqarikE~q~ 500 (1118)
T KOG1029|consen 477 VTKQRELMISEIDQLQARIKELQE 500 (1118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777777654333
No 6
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.11 E-value=4.6 Score=48.30 Aligned_cols=88 Identities=19% Similarity=0.294 Sum_probs=72.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHH
Q 002103 698 REKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKE 777 (966)
Q Consensus 698 r~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~ 777 (966)
.++...+++.++++..++++++.+....-..++.+|..++.++..|..-+.+....+-.++++..=...=..-|++++..
T Consensus 229 ~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q 308 (650)
T TIGR03185 229 AQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQ 308 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHHH
Confidence 34566677777777888888888888888899999999999999999999999999999999998777777888888888
Q ss_pred HHHHHHHH
Q 002103 778 AENENQEI 785 (966)
Q Consensus 778 ~e~~~q~i 785 (966)
++.+++..
T Consensus 309 ~~~e~~~~ 316 (650)
T TIGR03185 309 LQKEEQSQ 316 (650)
T ss_pred HHHHHHHH
Confidence 88776433
No 7
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.22 E-value=0.71 Score=51.21 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=101.6
Q ss_pred ccCCCCCCcHHHHHHHHH--hccchhhHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002103 630 LFQPDKPVTNAQAAVALA--IGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKM 707 (966)
Q Consensus 630 ~FQPnKPVTRAEAAAaL~--~G~~~e~v~eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~ 707 (966)
.|+=-|.-+|.+|-.+.| |-..-+++-+.|.+-=.. |..+.......+.+
T Consensus 118 Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~----------------------------l~~D~~~L~~~~~~ 169 (312)
T smart00787 118 QFQLVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEG----------------------------LKEDYKLLMKELEL 169 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHH
Confidence 577788889999988876 666667777666542211 11122222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHH
Q 002103 708 AEEARQELERLRAEREVDKIALMKERAAI-ESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIA 786 (966)
Q Consensus 708 ~eea~~eLe~~r~ere~e~~~llKerAa~-e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~ 786 (966)
+..++.+|.+....=..+...|.+....| .|--..|..||.++.++.+.+...+-++..=++.++++...++...+...
T Consensus 170 l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~ 249 (312)
T smart00787 170 LNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKS 249 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333 45677888888888888887777776666666666666666666666655
Q ss_pred HHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002103 787 RLQYELEVERKALSMARAWAEDEAKRAREQAKALEG 822 (966)
Q Consensus 787 ~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEe 822 (966)
+++.++-.-.+=+-.-|.|-..|+.+=+++-+.||.
T Consensus 250 e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 250 ELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 555555444444445689999999999999999987
No 8
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=6.2 Score=48.93 Aligned_cols=85 Identities=29% Similarity=0.350 Sum_probs=54.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHH
Q 002103 694 LSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINM 773 (966)
Q Consensus 694 l~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~k 773 (966)
...||++..++||.+|. ..|||+.|.|.++ |++-++|+-++.|-+-|. +--|+-|++.
T Consensus 363 qEqErk~qlElekqLer-QReiE~qrEEerk------keie~rEaar~ElEkqRq---------------lewErar~qe 420 (1118)
T KOG1029|consen 363 QEQERKAQLELEKQLER-QREIERQREEERK------KEIERREAAREELEKQRQ---------------LEWERARRQE 420 (1118)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 34577777788887755 4467777664433 344445555555444432 2357888899
Q ss_pred HHHHHHHHHHHHHHHhH---HHHHHHHHHH
Q 002103 774 LRKEAENENQEIARLQY---ELEVERKALS 800 (966)
Q Consensus 774 L~~~~e~~~q~i~~~k~---~LE~EkkAL~ 800 (966)
|+.+.+.+++.|..++. .|+.|-++|.
T Consensus 421 m~~Qk~reqe~iv~~nak~~ql~~eletLn 450 (1118)
T KOG1029|consen 421 MLNQKNREQEWIVYLNAKKKQLQQELETLN 450 (1118)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888877543 4566666653
No 9
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.68 E-value=13 Score=48.00 Aligned_cols=94 Identities=24% Similarity=0.316 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH----------HHhhhc--ceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002103 733 RAAIESEMEILSKLRREVEEQL----------ESLMSN--KVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 800 (966)
Q Consensus 733 rAa~e~e~q~L~~Lr~EVde~~----------q~L~s~--kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ 800 (966)
|-.|+.-+++|.+|-.+|-+.| +.||.+ .+++..+-+.|+.|-.+|...-..|.++..+|-.=|--+.
T Consensus 1463 ~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ 1542 (1758)
T KOG0994|consen 1463 RSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIA 1542 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHH
Confidence 3346777888888888876544 444443 4677788889999999998888777776666543332222
Q ss_pred ----------HHHHhHHHHHHHHHHHHHHHHHHhhH
Q 002103 801 ----------MARAWAEDEAKRAREQAKALEGARDR 826 (966)
Q Consensus 801 ----------maR~WaEdEA~r~~e~A~vLEea~~r 826 (966)
-+|+||||+-..+..--.+||+|-+-
T Consensus 1543 ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~A 1578 (1758)
T KOG0994|consen 1543 RAENLQSEAERARSRAEDVKGQAEDVVEALEEADVA 1578 (1758)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 24677777777776666777776543
No 10
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.62 E-value=6.4 Score=48.26 Aligned_cols=135 Identities=20% Similarity=0.297 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHH-HhhHHHHhhHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 002103 654 AVNEELQRIEAES-AAENAVSEHSALVAEVE--KEINESFEKELSMEREKIDVVEKMAEEARQELERLR---AEREVDKI 727 (966)
Q Consensus 654 ~v~eEL~RlEAE~-~a~~av~~~~~l~~~~~--~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r---~ere~e~~ 727 (966)
-+..||.||.+|- .+|+.+.+ |-.++. ---.+....+|..=|..-+.+|.-+.++..-.+..| ..=|+-+.
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~E---LRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~ 498 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQE---LRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA 498 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHH---HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888884 33433322 111100 000123333444444444444444444443333333 23345555
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHh----hhcceehhhHHH---------HHHHHHHHHHHHHHHHHHHhHHH
Q 002103 728 ALMKERAAIESEMEILSKLRREVEEQLESL----MSNKVEISYEKE---------RINMLRKEAENENQEIARLQYEL 792 (966)
Q Consensus 728 ~llKerAa~e~e~q~L~~Lr~EVde~~q~L----~s~kvei~~Ek~---------~l~kL~~~~e~~~q~i~~~k~~L 792 (966)
+..+-|+.+|.|-....+-|.+-++...+= .+.|. -..|.. .+.+|+.|+..+.+.+..++.++
T Consensus 499 eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~-e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 499 EERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQ-ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665555544433321 11111 222222 25566666666666555554444
No 11
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.41 E-value=9.2 Score=44.62 Aligned_cols=109 Identities=22% Similarity=0.172 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHH
Q 002103 703 VVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENEN 782 (966)
Q Consensus 703 ~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~ 782 (966)
..-.+|.+...++.+....-.+....|-..|+.|+.|++.|..+..|..++.++|.....| =+..+.+|.++++.++
T Consensus 147 R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E---~kk~~~~l~~~l~~~q 223 (420)
T COG4942 147 RLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEE---RKKTLAQLNSELSADQ 223 (420)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3445666777777777777778888888999999999999999999999999988765432 2445566666776666
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002103 783 QEIARLQYELEVERKALSMARAWAEDEAKRAREQAK 818 (966)
Q Consensus 783 q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~ 818 (966)
+.+..|+ +...+|.-.=+=+|.+|.++||.+.
T Consensus 224 ~~l~eL~----~~~~~L~~~Ias~e~~aA~~re~~a 255 (420)
T COG4942 224 KKLEELR----ANESRLKNEIASAEAAAAKAREAAA 255 (420)
T ss_pred HHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655444 3334444333334444444444443
No 12
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.37 E-value=22 Score=45.86 Aligned_cols=190 Identities=20% Similarity=0.238 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcce
Q 002103 683 EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKV 762 (966)
Q Consensus 683 ~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kv 762 (966)
+.+.++.|......-..++..+.+..+.+..+.+..+.+-+++...=|+++-.=...-+-|..=-..++..++.....+-
T Consensus 716 ~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~ 795 (1201)
T PF12128_consen 716 RNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRA 795 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45666777766666667777777777777777776666666666655555532211111111111222223333333332
Q ss_pred ehh-hHH-------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHh
Q 002103 763 EIS-YEK-------------ERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWE 828 (966)
Q Consensus 763 ei~-~Ek-------------~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~rW~ 828 (966)
.|. |++ .+..+|..++..-.+++.+++..|+.-++.+.-.|.=.+.+.+...++..-|++-.++=+
T Consensus 796 ~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~ 875 (1201)
T PF12128_consen 796 EVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLR 875 (1201)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 111 123334444444455555556666666666666666666666666666666666555433
Q ss_pred hcCcEEEEcCCccccccccchhhhcccccchHHHHHhHHHHHHHHHHhhhhcc
Q 002103 829 RQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVS 881 (966)
Q Consensus 829 ~~gikv~vd~~~~~~~~~~~~w~~~~~~~~~~~~~~ra~~l~~klk~m~~~~~ 881 (966)
....++ .++ ...|....-...+.+.+...++++..++.+..+++
T Consensus 876 ~~~~~l---~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 919 (1201)
T PF12128_consen 876 DLLEKL---AEL------SEPPNAEDAEGSVDERLRDLEDLLQRRKRLREELK 919 (1201)
T ss_pred HHHhhh---hhc------CCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 111 12233333347788888888888888887777776
No 13
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.13 E-value=10 Score=46.66 Aligned_cols=89 Identities=29% Similarity=0.296 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------------------------
Q 002103 743 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKA------------------------ 798 (966)
Q Consensus 743 L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkA------------------------ 798 (966)
|..||.|.|++--+|..-.-.--.||+.|+-|.+.+..++..-..+...|..||+|
T Consensus 462 L~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e 541 (697)
T PF09726_consen 462 LSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAE 541 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHH
Confidence 44444444443333333333334455555555555555555555555555555544
Q ss_pred -HHHHHHhHHHHHHHHHHHHHHHHHHhhHHhhcC
Q 002103 799 -LSMARAWAEDEAKRAREQAKALEGARDRWERQG 831 (966)
Q Consensus 799 -L~maR~WaEdEA~r~~e~A~vLEea~~rW~~~g 831 (966)
+..-|.=.|.|.++-|..-+..||.-+.|+..+
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455667777777777777888888887755
No 14
>PRK00106 hypothetical protein; Provisional
Probab=94.07 E-value=6.8 Score=46.76 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH-HHHH-HHHHHHHhhHHh
Q 002103 791 ELEVERKALSMARAWAEDEAKR-AREQ-AKALEGARDRWE 828 (966)
Q Consensus 791 ~LE~EkkAL~maR~WaEdEA~r-~~e~-A~vLEea~~rW~ 828 (966)
+-|+..++-.++|.. |+||+. +... -++|-.|-+|..
T Consensus 179 ~~~~~~~~~~~i~~~-e~~a~~~a~~~a~~ii~~aiqr~a 217 (535)
T PRK00106 179 ENKLTHEIATRIREA-EREVKDRSDKMAKDLLAQAMQRLA 217 (535)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334555566666654 333332 2222 246777777743
No 15
>PRK00106 hypothetical protein; Provisional
Probab=93.81 E-value=7.5 Score=46.44 Aligned_cols=56 Identities=14% Similarity=0.212 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002103 700 KIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLE 755 (966)
Q Consensus 700 ~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q 755 (966)
+...-|+.+..-...|++-...=++....|-+.+..++.+.+.|..++.++++..+
T Consensus 98 rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~ 153 (535)
T PRK00106 98 ELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEE 153 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333443333333333333333333333344444444444444444444444433
No 16
>PRK12704 phosphodiesterase; Provisional
Probab=93.62 E-value=11 Score=44.77 Aligned_cols=39 Identities=28% Similarity=0.339 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHH-HHHH-HHHHHHHhhHHh
Q 002103 789 QYELEVERKALSMARAWAEDEAKR-AREQ-AKALEGARDRWE 828 (966)
Q Consensus 789 k~~LE~EkkAL~maR~WaEdEA~r-~~e~-A~vLEea~~rW~ 828 (966)
+-+-|+.+++-.|.|. .|+||+. +... -++|-.|-+|..
T Consensus 162 ~~~~~~~~~~~~~~~~-~~~~~~~~a~~~a~~i~~~a~qr~a 202 (520)
T PRK12704 162 KVEEEARHEAAVLIKE-IEEEAKEEADKKAKEILAQAIQRCA 202 (520)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444556667777776 3445443 2222 346777888743
No 17
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=93.60 E-value=5.9 Score=41.18 Aligned_cols=88 Identities=25% Similarity=0.334 Sum_probs=41.1
Q ss_pred HHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 002103 661 RIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEM 740 (966)
Q Consensus 661 RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~ 740 (966)
+.||++.-..+...--+- ...+++-++.++...|......|+-+..--..|++....=++....|-+.+..+..++
T Consensus 44 ~~eAe~~~ke~~~eakee----~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~ 119 (201)
T PF12072_consen 44 EREAEAIKKEAELEAKEE----AQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRK 119 (201)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666555554431111 1234445556665555555555555544444444444433333334444444444444
Q ss_pred HHHHHHHHHHHH
Q 002103 741 EILSKLRREVEE 752 (966)
Q Consensus 741 q~L~~Lr~EVde 752 (966)
+.|-.++.+++.
T Consensus 120 ~~l~~~~~e~~~ 131 (201)
T PF12072_consen 120 EELEEREEELEE 131 (201)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.56 E-value=28 Score=44.71 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=16.0
Q ss_pred CccCCCCCccHHHHHHHHHHh
Q 002103 471 ADVKPGDLCIRREYARWLVSA 491 (966)
Q Consensus 471 g~F~PnepITRaEFARWLVrA 491 (966)
.+|==+..|+..++-..|..+
T Consensus 111 ~Y~INg~~~~~~dI~~l~~~~ 131 (1163)
T COG1196 111 EYYINGEKVRLKDIQDLLADS 131 (1163)
T ss_pred EEEECCcEeeHHHHHHHHHhc
Confidence 356667889999988887665
No 19
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.22 E-value=60 Score=44.46 Aligned_cols=88 Identities=20% Similarity=0.256 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002103 736 IESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRARE 815 (966)
Q Consensus 736 ~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e 815 (966)
+|.+...|..-=.+++.+...|+..+...+.|-..+.+.+.+.+.+...+++.++.++.+.+=| +.=+++|.|+...
T Consensus 1243 ~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~---k~qle~e~r~k~~ 1319 (1930)
T KOG0161|consen 1243 LEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEEL---KRQLEEETREKSA 1319 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3333333333334455555667888999999999999999999999999999999999886655 8889999999999
Q ss_pred HHHHHHHHhhH
Q 002103 816 QAKALEGARDR 826 (966)
Q Consensus 816 ~A~vLEea~~r 826 (966)
.+..|-.+.+-
T Consensus 1320 l~~~l~~l~~e 1330 (1930)
T KOG0161|consen 1320 LENALRQLEHE 1330 (1930)
T ss_pred HHHHHHHHHHH
Confidence 88888776654
No 20
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=92.21 E-value=19 Score=42.69 Aligned_cols=96 Identities=29% Similarity=0.327 Sum_probs=42.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHH
Q 002103 729 LMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAED 808 (966)
Q Consensus 729 llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEd 808 (966)
|-+.+..++.+.+.|.....+++++.+.+.....+...+-+++..|. ..+-.+.+--+-+-++..++-.|.|-. |+
T Consensus 99 Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt---~~eak~~l~~~~~~~~~~~~~~~~~~~-~~ 174 (514)
T TIGR03319 99 LDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLT---QEEAKEILLEEVEEEARHEAAKLIKEI-EE 174 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 33334445555555555555555554444332222222222222221 122222223334445566667777654 33
Q ss_pred HHHH-HHHH-HHHHHHHhhHHh
Q 002103 809 EAKR-AREQ-AKALEGARDRWE 828 (966)
Q Consensus 809 EA~r-~~e~-A~vLEea~~rW~ 828 (966)
||+. +... -++|-.|-+|..
T Consensus 175 ~~~~~a~~~a~~i~~~aiqr~a 196 (514)
T TIGR03319 175 EAKEEADKKAKEILATAIQRYA 196 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3332 2222 356778888843
No 21
>PRK11637 AmiB activator; Provisional
Probab=91.54 E-value=30 Score=39.54 Aligned_cols=43 Identities=9% Similarity=0.170 Sum_probs=19.3
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHH
Q 002103 728 ALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKER 770 (966)
Q Consensus 728 ~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~ 770 (966)
.|-+.|..++.+++.|..-+.++..++..+...+.++..++..
T Consensus 174 ~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e 216 (428)
T PRK11637 174 ELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNE 216 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444
No 22
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.32 E-value=18 Score=38.00 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=16.5
Q ss_pred cccchhhhcccccch-HHHHHhHHHHHHHHHHhh
Q 002103 845 DAAVMWVNAGKQFSV-DQTVSRAQSLVDKLKAMA 877 (966)
Q Consensus 845 ~~~~~w~~~~~~~~~-~~~~~ra~~l~~klk~m~ 877 (966)
..|+.+.|...-... +..|.-|=..+-.|=.|.
T Consensus 178 I~~~~lp~~~~~~~~~~~~isaALgyvahlv~ll 211 (302)
T PF10186_consen 178 ICGLPLPNSRDFNSLPDEEISAALGYVAHLVSLL 211 (302)
T ss_pred ecCcccCCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 457666665433332 355666644444444333
No 23
>PRK12704 phosphodiesterase; Provisional
Probab=90.96 E-value=25 Score=41.91 Aligned_cols=56 Identities=25% Similarity=0.284 Sum_probs=24.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 002103 698 REKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQ 753 (966)
Q Consensus 698 r~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~ 753 (966)
+.+...-|+.+..-...|++....-++....|-+.+..++.+.+.|..++.+++++
T Consensus 81 e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~ 136 (520)
T PRK12704 81 RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEEL 136 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445444444444444444333333344444444444444444444444433
No 24
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=90.90 E-value=50 Score=41.02 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=9.9
Q ss_pred CCCCccHHHHHHHHHH
Q 002103 475 PGDLCIRREYARWLVS 490 (966)
Q Consensus 475 PnepITRaEFARWLVr 490 (966)
-+.+||+.++...|-.
T Consensus 113 n~~~~~~~~~~~~l~~ 128 (1164)
T TIGR02169 113 NGQRVRLSEIHDFLAA 128 (1164)
T ss_pred CCccccHHHHHHHHHH
Confidence 4567777777665433
No 25
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=90.54 E-value=29 Score=41.23 Aligned_cols=83 Identities=19% Similarity=0.332 Sum_probs=39.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-------HHHHhhhcceehhhHHHH
Q 002103 698 REKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEE-------QLESLMSNKVEISYEKER 770 (966)
Q Consensus 698 r~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde-------~~q~L~s~kvei~~Ek~~ 770 (966)
+.+...-|+.+..-...|++-...=++....|-+.+..++.+.+.|-.+..|.++ .|++++. ++.|+-+
T Consensus 75 e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~----lt~~eak 150 (514)
T TIGR03319 75 RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISG----LTQEEAK 150 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHHH
Confidence 4444444555544444455444443344444445555555555555555555444 4555543 3334333
Q ss_pred ---HHHHHHHHHHHHHH
Q 002103 771 ---INMLRKEAENENQE 784 (966)
Q Consensus 771 ---l~kL~~~~e~~~q~ 784 (966)
|+++..++..+-..
T Consensus 151 ~~l~~~~~~~~~~~~~~ 167 (514)
T TIGR03319 151 EILLEEVEEEARHEAAK 167 (514)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555554444333
No 26
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=90.48 E-value=50 Score=40.25 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002103 768 KERINMLRKEAENENQEIARLQYELEVERKAL 799 (966)
Q Consensus 768 k~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL 799 (966)
..+|.||..-++...+.+..|+...|.=|.-|
T Consensus 393 e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL 424 (594)
T PF05667_consen 393 EENIAKLQALVEASEQRLVELAQQWEKHRAPL 424 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 46677777777777777777766655444333
No 27
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=90.34 E-value=61 Score=41.24 Aligned_cols=267 Identities=22% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHH--HHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 002103 660 QRIE--AESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIE 737 (966)
Q Consensus 660 ~RlE--AE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e 737 (966)
+|+| +|..+++ +..|.+|+.+. +||. +++..++.-+++|++...+.-.-||++..++.....-+---+-.++
T Consensus 424 ~ry~klkek~t~l-~~~h~~lL~K~-~di~----kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le 497 (980)
T KOG0980|consen 424 NRYEKLKEKYTEL-RQEHADLLRKY-DDIQ----KQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALE 497 (980)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH-HHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------hHHHH
Q 002103 738 SEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARA--------WAEDE 809 (966)
Q Consensus 738 ~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~--------WaEdE 809 (966)
+=++.|..|-.|++++-..|-+-.-....+...|+.++++--..-.++..-.-++++ +++...|+ =.-+|
T Consensus 498 ~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~--~~~e~e~si~ql~l~~~~~~e 575 (980)
T KOG0980|consen 498 SLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEEREA--LRLEAERSINQLELDSSASTE 575 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHhhHHHhhcccccchH
Q ss_pred HHHHHHHHHHHHHHhhHHhhcCcEEEEcCCccccccccchhhhcccccchHHHHHhHHHHHHHHHHhhhhcc--cchHHH
Q 002103 810 AKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVS--GKSKEI 887 (966)
Q Consensus 810 A~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w~~~~~~~~~~~~~~ra~~l~~klk~m~~~~~--~~~~~~ 887 (966)
|--.|-.-..=--..+-=...||.+.++.=...+..++ | +-..+-+-.+.++++..+-...+.+-.+ -....-
T Consensus 576 a~~tQ~~~~~~~~il~~~~~~~~q~lq~al~~ld~P~~--~---~~~~~p~~Llst~~~~s~n~~~~e~~~~~yla~~~d 650 (980)
T KOG0980|consen 576 AGITQLQDDLNDPILDGSLASGIQALQNALYQLDSPLH--W---RCLTSPDFLLSTAENASVNATQFETSFNNYLADGDD 650 (980)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCcc--c---CcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCchh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhhhhhhhhhHHhhhhhcc
Q 002103 888 INTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFK 965 (966)
Q Consensus 888 ~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~~~c~~gv~k~~~rfk 965 (966)
++.+|+-|..|-..+-..+.++..-+.. +..||+-||.+-||. +++.+++|+
T Consensus 651 ~s~~i~~v~~fs~~~~~~~~na~a~~~t-------------------------a~~e~~d~v~~l~k~-~~~~a~~~~ 702 (980)
T KOG0980|consen 651 ASDLIHCVTLFSHLISTTINNAKATAYT-------------------------ASPEGSDRVNDLCKK-CGREALAFL 702 (980)
T ss_pred hhhHhhHHHHHHHHHHHHHhcchhheec-------------------------cCCchhHHHHHHHHH-HHHHHHHHH
No 28
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=90.13 E-value=59 Score=40.56 Aligned_cols=71 Identities=27% Similarity=0.301 Sum_probs=46.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---------HHHHHHHHHHHHHHHhhhcceeh
Q 002103 694 LSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEME---------ILSKLRREVEEQLESLMSNKVEI 764 (966)
Q Consensus 694 l~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q---------~L~~Lr~EVde~~q~L~s~kvei 764 (966)
+..++.--.+|.-+.+++.+-+..+ |+....+.|||-|+..|+. ++..+-.|-|||.-.|+.+--+.
T Consensus 390 ~~~~k~~~s~~ssl~~e~~QRva~l----EkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkL 465 (961)
T KOG4673|consen 390 DLKRKSNESEVSSLREEYHQRVATL----EKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKL 465 (961)
T ss_pred HHHHHhhcccccchHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445666666666655443 4556678888888887776 34445566899999998876666
Q ss_pred hhHH
Q 002103 765 SYEK 768 (966)
Q Consensus 765 ~~Ek 768 (966)
+-++
T Consensus 466 SK~q 469 (961)
T KOG4673|consen 466 SKKQ 469 (961)
T ss_pred HHHH
Confidence 5543
No 29
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.10 E-value=70 Score=41.36 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=53.1
Q ss_pred hHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHHHHHHHHHHhhhhHH
Q 002103 859 VDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNL------KKWASKASMRAAELKDATILKAKGSVQ 929 (966)
Q Consensus 859 ~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (966)
+-++=+|-+.|-+|...|-..|+-+.-.+|++.=.++..|.+.+ |..+.+.....++.+-.+..||+..+.
T Consensus 960 p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~kaw~~VN 1036 (1174)
T KOG0933|consen 960 PHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKREELNKAWEKVN 1036 (1174)
T ss_pred HhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666778888888888899999999998887777665544 456666777778888888888877663
No 30
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.08 E-value=46 Score=41.10 Aligned_cols=255 Identities=15% Similarity=0.172 Sum_probs=125.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHhh-hh
Q 002103 675 HSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKI--------------------ALMK-ER 733 (966)
Q Consensus 675 ~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~--------------------~llK-er 733 (966)
+..+++++++.+..++..++....+....+.+-...+..||..+-...-.... .+|- =|
T Consensus 37 ~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr 116 (660)
T KOG4302|consen 37 RDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLR 116 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHH
Confidence 44567777777777777666666666666666666666666655443211111 0000 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhc----ceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHH
Q 002103 734 AAIESEMEILSKLRREVEEQLESLMSN----KVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDE 809 (966)
Q Consensus 734 Aa~e~e~q~L~~Lr~EVde~~q~L~s~----kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdE 809 (966)
+.-+.-+..+..|.++++.+.+.|... ...+.+|.+--. .+++.=+..+ .+|+-||
T Consensus 117 ~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl---~kLeelr~~L----~~L~~ek------------- 176 (660)
T KOG4302|consen 117 KQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSL---EKLEELREHL----NELQKEK------------- 176 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccH---HHHHHHHHHH----HHHHHHH-------------
Confidence 333333444455555555555555544 111222211100 1111111111 1222222
Q ss_pred HHHHHHHHHHHHHHhhHHhhcCcEEE-----EcCCccccccccchhhhcccccchHHHHHhHHHHHHHHHHhhhhcccch
Q 002103 810 AKRAREQAKALEGARDRWERQGIKVV-----VDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKS 884 (966)
Q Consensus 810 A~r~~e~A~vLEea~~rW~~~gikv~-----vd~~~~~~~~~~~~w~~~~~~~~~~~~~~ra~~l~~klk~m~~~~~~~~ 884 (966)
+.|-+.--...++...-|.--|++.- |..+|.+... .-...-.++|+.|-+.++.+|+.+..+-
T Consensus 177 ~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~-------~~~~~is~etl~~L~~~v~~l~~~k~qr---- 245 (660)
T KOG4302|consen 177 SDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDG-------EQSRSISDETLDRLDKMVKKLKEEKKQR---- 245 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccC-------cccccCCHHHHHHHHHHHHHHHHHHHHH----
Confidence 23334444455666677888887654 2333333221 0015566889999999988888876543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhhhhhhhhhHHhh
Q 002103 885 KEIINTIIHKILLFISNLKKWASKASMRA----AELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKL 960 (966)
Q Consensus 885 ~~~~~~~~~~i~~~i~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~~~c~~gv~k~ 960 (966)
.+.|..+..+|+.|-..|.-=.-+..... .|+-+. .+-....|..++.-|.-...-=...-|.|+..||..++.|
T Consensus 246 ~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~-~~ls~d~I~~ve~Ev~Rl~qlK~s~mKeli~k~r~Eleel 324 (660)
T KOG4302|consen 246 LQKLQDLRTKLLELWNLLDTSDEERQRFVHVTESEATEP-NSLSLDIIEQVEKEVDRLEQLKASNMKELIEKKRSELEEL 324 (660)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHccccHHHhhcc-ccccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33466666666666666543222222211 122222 2222334444444444444444445688888888877766
Q ss_pred h
Q 002103 961 T 961 (966)
Q Consensus 961 ~ 961 (966)
-
T Consensus 325 ~ 325 (660)
T KOG4302|consen 325 W 325 (660)
T ss_pred H
Confidence 4
No 31
>PTZ00121 MAEBL; Provisional
Probab=89.99 E-value=42 Score=44.71 Aligned_cols=34 Identities=32% Similarity=0.365 Sum_probs=19.9
Q ss_pred cHHHHHHHHHhccchhhHHHHHHHHHHHHHhhHH
Q 002103 638 TNAQAAVALAIGEASDAVNEELQRIEAESAAENA 671 (966)
Q Consensus 638 TRAEAAAaL~~G~~~e~v~eEL~RlEAE~~a~~a 671 (966)
.|+.-|.--.+|...++-.+|--|.|+++.+..+
T Consensus 1087 ~~~~~~~~~~~~~~e~~r~~et~r~ee~r~~ee~ 1120 (2084)
T PTZ00121 1087 NRADEATEEAFGKAEEAKKTETGKAEEARKAEEA 1120 (2084)
T ss_pred ccchhhhHHHhhhHHHhhhhhhhhhHHHHHHHHH
Confidence 3555555555777777766666666655544443
No 32
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=89.75 E-value=60 Score=40.11 Aligned_cols=12 Identities=8% Similarity=0.249 Sum_probs=5.1
Q ss_pred HHHHHhHHHHhh
Q 002103 929 QELQQSTAEFRS 940 (966)
Q Consensus 929 ~~~~~~~~~~~~ 940 (966)
..++.....+|.
T Consensus 968 ~~l~~~i~~lg~ 979 (1179)
T TIGR02168 968 EEARRRLKRLEN 979 (1179)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 33
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.29 E-value=61 Score=39.50 Aligned_cols=65 Identities=26% Similarity=0.369 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 002103 687 NESFEKELSMEREKIDVVEKMAEEAR-----------------QELERLRAEREVDKIALMKERAAIESEMEILSKLRRE 749 (966)
Q Consensus 687 ~~~f~~el~~Er~~~~~vEk~~eea~-----------------~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~E 749 (966)
++.|+++|++=.+-++++|--.+..+ .+++++..||++-.-++.|=.-+++..++.+-.++.|
T Consensus 289 ~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~ 368 (581)
T KOG0995|consen 289 KQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLE 368 (581)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45577776655444444444333333 2455666666666666666666666666666555554
Q ss_pred HH
Q 002103 750 VE 751 (966)
Q Consensus 750 Vd 751 (966)
+.
T Consensus 369 ~~ 370 (581)
T KOG0995|consen 369 IE 370 (581)
T ss_pred HH
Confidence 43
No 34
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.55 E-value=94 Score=40.74 Aligned_cols=13 Identities=8% Similarity=0.151 Sum_probs=6.7
Q ss_pred HHHhhhhHHhhhc
Q 002103 106 VLFAGLTFAALSL 118 (966)
Q Consensus 106 ~l~~gl~faa~s~ 118 (966)
-||-+|+||-+.+
T Consensus 43 Til~ai~~al~G~ 55 (1311)
T TIGR00606 43 TIIECLKYICTGD 55 (1311)
T ss_pred HHHHHHHHHhcCC
Confidence 3445566665544
No 35
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=88.36 E-value=4.2 Score=50.08 Aligned_cols=57 Identities=25% Similarity=0.209 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceeh
Q 002103 708 AEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEI 764 (966)
Q Consensus 708 ~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei 764 (966)
.+.|+.-+...+.+-++-+..|-++|..++.+++.+.+++.|++++.++|-.+.-++
T Consensus 499 i~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 555 (771)
T TIGR01069 499 IEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEEL 555 (771)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343344444444444455555555555555555555555555555554444333
No 36
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.80 E-value=38 Score=35.61 Aligned_cols=9 Identities=0% Similarity=0.154 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 002103 815 EQAKALEGA 823 (966)
Q Consensus 815 e~A~vLEea 823 (966)
.|...+.++
T Consensus 145 ~r~~l~~~l 153 (302)
T PF10186_consen 145 RRRQLIQEL 153 (302)
T ss_pred HHHHHHHHH
Confidence 344444443
No 37
>PTZ00121 MAEBL; Provisional
Probab=87.44 E-value=92 Score=41.86 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=14.3
Q ss_pred cccccccCCCCCCCCCccccccc
Q 002103 44 VHLRCFGPSAGRRRGCSLSIRSE 66 (966)
Q Consensus 44 ~~~~~~~~~~~~~~g~~~~~~~~ 66 (966)
-.-|||-+ -....|..||.-|+
T Consensus 291 n~~rCf~p-~Kke~gk~wtY~sS 312 (2084)
T PTZ00121 291 GFERCFLP-MKKEAGKEWTYASS 312 (2084)
T ss_pred CCcceeee-ecccccCCceeeec
Confidence 34456666 66677788876654
No 38
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.28 E-value=26 Score=43.53 Aligned_cols=76 Identities=22% Similarity=0.344 Sum_probs=50.2
Q ss_pred HHHHHHHHH-HHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHH---HhhhhhHHH---------------------
Q 002103 687 NESFEKELS-MEREKIDVVEKMAE----EARQELERLRAEREVDKIA---LMKERAAIE--------------------- 737 (966)
Q Consensus 687 ~~~f~~el~-~Er~~~~~vEk~~e----ea~~eLe~~r~ere~e~~~---llKerAa~e--------------------- 737 (966)
++.|+-||. .||....++|++-+ +.|.|-.|+|.|+|++... .||.+--..
T Consensus 836 kr~~d~EmenlErqQkq~iE~~Eq~h~~rlR~eakRir~EQekd~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~e 915 (1187)
T KOG0579|consen 836 KRTSDLEMENLERQQKQEIEDTEQAHEHRLRNEAKRIRIEQEKDMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKE 915 (1187)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455666653 57888888887654 4566777889999988753 344332222
Q ss_pred -----H---HHHHHHHHHHHHHHHHHHhhhcce
Q 002103 738 -----S---EMEILSKLRREVEEQLESLMSNKV 762 (966)
Q Consensus 738 -----~---e~q~L~~Lr~EVde~~q~L~s~kv 762 (966)
+ +++.+.+++.++|.||++++...-
T Consensus 916 q~~~~~ql~ekdFv~kqqq~le~~lkrm~~~~k 948 (1187)
T KOG0579|consen 916 QIEIEHQLKEKDFVMKQQQNLEAMLKRMAEKHK 948 (1187)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 246677888888888888876543
No 39
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=87.25 E-value=72 Score=37.95 Aligned_cols=114 Identities=26% Similarity=0.266 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 002103 676 SALVAEVEKEINESFEKELSM---EREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEE 752 (966)
Q Consensus 676 ~~l~~~~~~di~~~f~~el~~---Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde 752 (966)
+..+..+++++..+=..++.. ++.....+...+..+..||+..+..-++-+.+...=|..+++=+-.|-+.|.|+..
T Consensus 248 ~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~ 327 (522)
T PF05701_consen 248 SAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELER 327 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667776666656665 35666667777888899999999888888888888888888888888888888888
Q ss_pred HHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002103 753 QLESLMSNKVEISYEKERINMLRKEAENENQEIARLQ 789 (966)
Q Consensus 753 ~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k 789 (966)
+-+++..-.+.|..=+..|.+++.+++.-+..-.+.+
T Consensus 328 lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k 364 (522)
T PF05701_consen 328 LKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAK 364 (522)
T ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchh
Confidence 8888888888777777777777777765544444443
No 40
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.15 E-value=33 Score=37.09 Aligned_cols=74 Identities=26% Similarity=0.226 Sum_probs=42.3
Q ss_pred HHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002103 724 VDKIALMKE-RAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERK 797 (966)
Q Consensus 724 ~e~~~llKe-rAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ekk 797 (966)
.+.+.+|-+ +--.+.+.+.|-.-+.+.+++.++|......-..|+..|..-..+++.+-..+.......+.|.+
T Consensus 32 e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~ 106 (246)
T PF00769_consen 32 EETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAE 106 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344545533 44457788899999999999999999999988888888777766666666555555544444443
No 41
>PRK11637 AmiB activator; Provisional
Probab=86.87 E-value=64 Score=36.95 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHH
Q 002103 654 AVNEELQRIEAES 666 (966)
Q Consensus 654 ~v~eEL~RlEAE~ 666 (966)
.+.++|..++.+-
T Consensus 44 ~~~~~l~~l~~qi 56 (428)
T PRK11637 44 DNRDQLKSIQQDI 56 (428)
T ss_pred hhHHHHHHHHHHH
Confidence 3455555555443
No 42
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.44 E-value=1.2e+02 Score=39.83 Aligned_cols=58 Identities=24% Similarity=0.208 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHhh
Q 002103 772 NMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWER 829 (966)
Q Consensus 772 ~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~rW~~ 829 (966)
++.+.+++.-+.++.+|+-.++.|.+-|.=-+.=+..+...-++--.-+|+.--.|..
T Consensus 436 e~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~ 493 (1293)
T KOG0996|consen 436 EKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLK 493 (1293)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 3444445555556666666666666666666666666666666655566665555553
No 43
>PLN03188 kinesin-12 family protein; Provisional
Probab=86.31 E-value=51 Score=43.29 Aligned_cols=120 Identities=23% Similarity=0.304 Sum_probs=80.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhhh
Q 002103 670 NAVSEHSALVAEVEKEINESFEKELSMER---EKIDVVEKMAE-------------EARQELERLRAEREVDKIALMKER 733 (966)
Q Consensus 670 ~av~~~~~l~~~~~~di~~~f~~el~~Er---~~~~~vEk~~e-------------ea~~eLe~~r~ere~e~~~llKer 733 (966)
-|+-+|..|+++- -|++.-+-+=|.+=| +=|.+|-|-+. ..-.||--||.+||||..-|.+|-
T Consensus 1104 ~am~ghar~~e~y-a~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~en 1182 (1320)
T PLN03188 1104 MAMEGHARMLEQY-ADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDEN 1182 (1320)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555688888874 566655555554444 34455555443 334799999999999998887775
Q ss_pred h-----------HHHHHHHHHHHHHHHHHHHHHHhhhcceeh-hhHHHHHHHHHHHHHHHH-HHHHHHhHHH
Q 002103 734 A-----------AIESEMEILSKLRREVEEQLESLMSNKVEI-SYEKERINMLRKEAENEN-QEIARLQYEL 792 (966)
Q Consensus 734 A-----------a~e~e~q~L~~Lr~EVde~~q~L~s~kvei-~~Ek~~l~kL~~~~e~~~-q~i~~~k~~L 792 (966)
- ||.+-=+||.+||+= |.--.+|-+|... -+|-+++-|...++..|| .+|+-+|-.|
T Consensus 1183 k~l~~qlrdtaeav~aagellvrl~ea--eea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~ 1252 (1320)
T PLN03188 1183 KSLQAQLRDTAEAVQAAGELLVRLKEA--EEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLV 1252 (1320)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 455667899999863 3344566666543 355666667666777788 7888887777
No 44
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=86.20 E-value=99 Score=40.74 Aligned_cols=105 Identities=24% Similarity=0.324 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHH-------HHHHH---HHHHHHH
Q 002103 689 SFEKELSMEREKIDVVEKMAEEARQELERLRAEREVD---KIALMKERAAIESEMEIL-------SKLRR---EVEEQLE 755 (966)
Q Consensus 689 ~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e---~~~llKerAa~e~e~q~L-------~~Lr~---EVde~~q 755 (966)
.-.+++..|+++...++.+......||+.++.....- +..+.+.|+.++.+...+ .+||. +...|+|
T Consensus 498 e~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq 577 (1317)
T KOG0612|consen 498 EVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQ 577 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHH
Confidence 4456677777777777777777777777774433332 223444444444322221 12222 2333333
Q ss_pred HhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002103 756 SLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVER 796 (966)
Q Consensus 756 ~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ek 796 (966)
.+.. +.....++++-|+......-++-..+++++|+++
T Consensus 578 ~~~e---~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~ 615 (1317)
T KOG0612|consen 578 QELE---ENRDLEDKLSLLEESKSKLSKENKKLRSELEKER 615 (1317)
T ss_pred HHhh---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 4444455555555544444444445555555544
No 45
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=86.20 E-value=53 Score=35.42 Aligned_cols=119 Identities=23% Similarity=0.350 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 002103 678 LVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAE---REVDKIALMKERAAIESEMEILSKLRREVEEQL 754 (966)
Q Consensus 678 l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~e---re~e~~~llKerAa~e~e~q~L~~Lr~EVde~~ 754 (966)
++.+-+.|+...|..++..=+........-+..++.|+.++|.. -..++..|-...++++.+...|- .+.+...
T Consensus 181 ~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le---~~~~~~~ 257 (312)
T PF00038_consen 181 IAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE---QRLDEER 257 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH---HHHHHHH
Confidence 33444556666666666554555555555555666666666553 23333344444444444443332 1122211
Q ss_pred HHhhhcceehhhHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHH
Q 002103 755 ESLMSNKVEISYEKERINMLRKEAE---NENQEIARLQYELEVERKALSMA 802 (966)
Q Consensus 755 q~L~s~kvei~~Ek~~l~kL~~~~e---~~~q~i~~~k~~LE~EkkAL~ma 802 (966)
+.+-. .|..=...|.+|+.+++ .+.+.+.++|--|+.|..+.+-|
T Consensus 258 ~~~~~---~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~L 305 (312)
T PF00038_consen 258 EEYQA---EIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKL 305 (312)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---hhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11111 11111233455555554 34588999999999998876543
No 46
>PRK02224 chromosome segregation protein; Provisional
Probab=86.19 E-value=95 Score=38.31 Aligned_cols=12 Identities=33% Similarity=0.385 Sum_probs=5.5
Q ss_pred hhhhhhhhhHHh
Q 002103 948 RVAGDCREGVEK 959 (966)
Q Consensus 948 r~~~~c~~gv~k 959 (966)
.+.++++..+.+
T Consensus 468 ~~~~~~~~~~~~ 479 (880)
T PRK02224 468 ETIEEDRERVEE 479 (880)
T ss_pred hhHHHHHHHHHH
Confidence 444444444444
No 47
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=86.08 E-value=57 Score=35.81 Aligned_cols=60 Identities=27% Similarity=0.281 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002103 743 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMA 802 (966)
Q Consensus 743 L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ma 802 (966)
+..|..|++-.=+++.+-.-++..=.+++++|..+++..++.+.+++-.+.+.++++.-.
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e 150 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEE 150 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444333333333333333334555555566666666666666666655555443
No 48
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=85.83 E-value=41 Score=39.33 Aligned_cols=57 Identities=28% Similarity=0.348 Sum_probs=41.3
Q ss_pred ccchhhHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002103 649 GEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMA 708 (966)
Q Consensus 649 G~~~e~v~eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~ 708 (966)
|...++|.+||..|- |-+++....-| .|.++.++|++ |.-+-|.+||=|-+-+|..+
T Consensus 259 ~~~l~aileeL~eIk-~~q~~Leesye-~Lke~~krdy~-fi~etLQEERyR~erLEEqL 315 (455)
T KOG3850|consen 259 GAALDAILEELREIK-ETQALLEESYE-RLKEQIKRDYK-FIAETLQEERYRYERLEEQL 315 (455)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 333789999998775 44555544443 58888889995 88888999998877766655
No 49
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.81 E-value=76 Score=36.79 Aligned_cols=12 Identities=0% Similarity=0.409 Sum_probs=6.7
Q ss_pred cHHHHHHHHHHh
Q 002103 480 IRREYARWLVSA 491 (966)
Q Consensus 480 TRaEFARWLVrA 491 (966)
+..+|..+|...
T Consensus 111 ~~~~~~~~i~~~ 122 (562)
T PHA02562 111 SSKDFQKYFEQM 122 (562)
T ss_pred cHHHHHHHHHHH
Confidence 455666665553
No 50
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=85.77 E-value=35 Score=40.04 Aligned_cols=145 Identities=23% Similarity=0.251 Sum_probs=82.9
Q ss_pred CccCCCCCCcHHHH--HHHHHhccchhhHHHH--HHHHHHHHHhhHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 002103 629 RLFQPDKPVTNAQA--AVALAIGEASDAVNEE--LQRIEAESAAENAVSE-HSALVAEVEKEINESFEKELSMEREKIDV 703 (966)
Q Consensus 629 ~~FQPnKPVTRAEA--AAaL~~G~~~e~v~eE--L~RlEAE~~a~~av~~-~~~l~~~~~~di~~~f~~el~~Er~~~~~ 703 (966)
.+|.|.+--|+-.+ =.+.++-..++.+..| +.+.|....++..-.. --.|..++ .||+ ||.++|..|=+...+
T Consensus 21 ~r~s~~dW~~~~~~~~~~a~a~r~~s~~ir~~sr~l~~e~~~~t~~~q~dtt~~L~~R~-~di~-~Wk~el~~ele~l~~ 98 (421)
T KOG2685|consen 21 QRYSPTDWFTRNSAQVQEADASRDQSERIRRESRLLVNETNALTDKMQRDTTEKLGQRL-DDVN-FWKGELDRELEDLAA 98 (421)
T ss_pred cccChhhhcccccccccHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHH-HHHHHHHHHHHHHHH
Confidence 34555544333222 2334444455556666 4455555655555444 34677876 7896 999999988655444
Q ss_pred H----HHHHHHHHHHHHHHH---HH-------HHHH----------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002103 704 V----EKMAEEARQELERLR---AE-------REVD----------KIALMKERAAIESEMEILSKLRREVEEQLESLMS 759 (966)
Q Consensus 704 v----Ek~~eea~~eLe~~r---~e-------re~e----------~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s 759 (966)
. +........+|+-+. .. |++- -.+|+||-+.|++=+++|.+.=.++.+|+..+-
T Consensus 99 E~~~L~~~k~rle~~L~~~~~P~~ia~eCL~~RekR~~~dlv~D~Ve~EL~kE~eli~~~q~ll~~~~~~a~~Ql~~nr- 177 (421)
T KOG2685|consen 99 EIDDLLHEKRRLERALNALALPLSIAEECLAHREKRQGIDLVHDEVETELHKEVELIENIQELLKKTLERAEEQLRLNR- 177 (421)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhcccchhhccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 2 222222222222111 01 2211 136888888888888888888888888876553
Q ss_pred cceehhhHHHHHHHHHHHHHHHHHHH
Q 002103 760 NKVEISYEKERINMLRKEAENENQEI 785 (966)
Q Consensus 760 ~kvei~~Ek~~l~kL~~~~e~~~q~i 785 (966)
+-=++|..|++.|.+++
T Consensus 178 ---------~ar~~Le~Dl~dK~eA~ 194 (421)
T KOG2685|consen 178 ---------EARQNLERDLSDKQEAY 194 (421)
T ss_pred ---------HHHHHHhhhhhhhhhhh
Confidence 23356666777776654
No 51
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=84.52 E-value=1.3e+02 Score=38.41 Aligned_cols=211 Identities=18% Similarity=0.219 Sum_probs=108.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHH--------------HHHHHHHHHHHh---hhcceehhhHHHHHHHHHHHHH----
Q 002103 721 EREVDKIALMKERAAIESEMEILSK--------------LRREVEEQLESL---MSNKVEISYEKERINMLRKEAE---- 779 (966)
Q Consensus 721 ere~e~~~llKerAa~e~e~q~L~~--------------Lr~EVde~~q~L---~s~kvei~~Ek~~l~kL~~~~e---- 779 (966)
.-++++..|+-+.|..+.|+++|.+ .+.|+.+-+++| -+.++..-|--.+++-|-+-.+
T Consensus 376 nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrr 455 (1265)
T KOG0976|consen 376 NVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRR 455 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHh
Confidence 3445667778888888888877753 233444444443 3333332233334444444333
Q ss_pred ----HHHHHHHHHh---HHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHhhHHhhcCcEEEEc--CCcccccccc
Q 002103 780 ----NENQEIARLQ---YELEVERK---ALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVD--KDLREESDAA 847 (966)
Q Consensus 780 ----~~~q~i~~~k---~~LE~Ekk---AL~maR~WaEdEA~r~~e~A~vLEea~~rW~~~gikv~vd--~~~~~~~~~~ 847 (966)
..++-|.+++ .-||.-|| -+-|+.+-.+.||+|-.+--+.|.+.+=-++..--+..-- +|-.-+.+
T Consensus 456 raIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefmkEeiQethldyR~els~lA~r~ag~h~adss-- 533 (1265)
T KOG0976|consen 456 RAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKEEIQETHLDYRSELSELAHRKAGDHPADSS-- 533 (1265)
T ss_pred hHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC--
Confidence 3333333322 22222222 1346666677777776655555544432222100000000 01111111
Q ss_pred chhhhcccccchHHHHHhHHHHHHHHHHhhhhcc----------cchHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHH
Q 002103 848 VMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVS----------GKSKEIINTIIHKILLFIS---NLKKWASKASMRAA 914 (966)
Q Consensus 848 ~~w~~~~~~~~~~~~~~ra~~l~~klk~m~~~~~----------~~~~~~~~~~~~~i~~~i~---~l~~~~~~~~~~~~ 914 (966)
-....+-+--+||.|...=--|+..|-..++ +++|.-..+.+++|-++-. .+|+--+.++..+.
T Consensus 534 ---qrdselrsAkktIqevkadn~k~q~lL~evrq~q~k~leenv~lRkgma~a~~kIee~kr~w~nsret~erl~let~ 610 (1265)
T KOG0976|consen 534 ---QRDSELRSAKKTIQEVKADNPKAQSLLAEVRQRQKKSLEENVFLRKGMARAHHKIEERKRVWLNSRETKERLCLETV 610 (1265)
T ss_pred ---cccHHHHHHHHHHHhccccCHHHHHHhhchhhhhhhccChHHHHHHHHHHHHhhhHHHHhhhhhhHHHHHHHHHHhh
Confidence 1223344455677765333334455555544 5666667777777766543 35666667777778
Q ss_pred HHHHHHHHHhhhhHHHHHHhHHH
Q 002103 915 ELKDATILKAKGSVQELQQSTAE 937 (966)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~ 937 (966)
.++|. ..|..+.+++..+-|.+
T Consensus 611 ~~e~k-~~k~eeelqek~~qVme 632 (1265)
T KOG0976|consen 611 HFEDK-LDKLEEELQEKECQVME 632 (1265)
T ss_pred hhhhh-hHHHHHHHHHHHHHHhc
Confidence 88888 77888888887776654
No 52
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=84.50 E-value=43 Score=39.73 Aligned_cols=148 Identities=24% Similarity=0.303 Sum_probs=70.3
Q ss_pred hhhHHHHHHHHH-HHHHhhHHHHhhHHHH--------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 002103 652 SDAVNEELQRIE-AESAAENAVSEHSALV--------------AEVEKEINESFEKELSMEREKIDVVEKMAEEARQELE 716 (966)
Q Consensus 652 ~e~v~eEL~RlE-AE~~a~~av~~~~~l~--------------~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe 716 (966)
.+.+.+|+.||. +|+..+..-.+...|- .++.+.+...++.++..=.++...+.-.++++..+|.
T Consensus 211 ~e~L~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~ 290 (563)
T TIGR00634 211 DEALEAEQQRLSNLEKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQ 290 (563)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777776 6666555544433221 1112223222343333333334444444444444444
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002103 717 RLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVER 796 (966)
Q Consensus 717 ~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ek 796 (966)
+....-+-+-. +-..++.....+.+|++.--..++.|...+-++..|-+.++....+++.-.+++..++..++.=-
T Consensus 291 ~~~~~l~~dp~----~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a 366 (563)
T TIGR00634 291 NYLDELEFDPE----RLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAA 366 (563)
T ss_pred HHHHhCCCCHH----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 43332111111 11335555556666665555555555555555555555555555555555556655555555444
Q ss_pred HHHHHHH
Q 002103 797 KALSMAR 803 (966)
Q Consensus 797 kAL~maR 803 (966)
+.|+.+|
T Consensus 367 ~~Ls~~R 373 (563)
T TIGR00634 367 VALSLIR 373 (563)
T ss_pred HHHHHHH
Confidence 4555443
No 53
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=84.50 E-value=21 Score=44.24 Aligned_cols=12 Identities=8% Similarity=0.396 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 002103 744 SKLRREVEEQLE 755 (966)
Q Consensus 744 ~~Lr~EVde~~q 755 (966)
..++.|..++++
T Consensus 569 ~~~~~~a~~~l~ 580 (782)
T PRK00409 569 EEAEKEAQQAIK 580 (782)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 54
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=84.15 E-value=1.9e+02 Score=40.04 Aligned_cols=101 Identities=26% Similarity=0.268 Sum_probs=56.2
Q ss_pred HHHHHHHHhhHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 002103 660 QRIEAESAAENAVSEHSALVAEV--EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIE 737 (966)
Q Consensus 660 ~RlEAE~~a~~av~~~~~l~~~~--~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e 737 (966)
.|-|-|.....-+.+...|..++ +++.-+-=++.+..++.+..++|+.+.+...+++.+ ++.+..+=+++-.++
T Consensus 860 ~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~----ee~~~~le~~~~~~~ 935 (1930)
T KOG0161|consen 860 KRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEE----EEKNAELERKKRKLE 935 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 33333333334444444454444 555555555555556666666666665555544433 333445555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcceeh
Q 002103 738 SEMEILSKLRREVEEQLESLMSNKVEI 764 (966)
Q Consensus 738 ~e~q~L~~Lr~EVde~~q~L~s~kvei 764 (966)
.+.+.|.....+++.+++.|..++...
T Consensus 936 ~e~~~l~~~~~~~E~~~~k~~~Ek~~~ 962 (1930)
T KOG0161|consen 936 QEVQELKEQLEELELTLQKLELEKNAA 962 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777777777665543
No 55
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=83.98 E-value=76 Score=38.56 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHhHHHHHH
Q 002103 768 KERINMLRKEAENEN----QEIARLQYELEVE 795 (966)
Q Consensus 768 k~~l~kL~~~~e~~~----q~i~~~k~~LE~E 795 (966)
+.++|.|+.+|++.. ++|.+++.....+
T Consensus 203 ~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd 234 (546)
T KOG0977|consen 203 QNRVQTLLEELAFLKRIHKQEIEEERRKARRD 234 (546)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 345556666665554 5555555554444
No 56
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=83.72 E-value=14 Score=47.35 Aligned_cols=38 Identities=26% Similarity=0.203 Sum_probs=22.3
Q ss_pred ccCCCCCCcHHHHHHHHHhccchhhHHHHHHHHHHHHHh
Q 002103 630 LFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAA 668 (966)
Q Consensus 630 ~FQPnKPVTRAEAAAaL~~G~~~e~v~eEL~RlEAE~~a 668 (966)
...|..-.|.-.|.+-.|.|+..-.. .|-.|+|.|+.-
T Consensus 409 ~~~~s~~~~~~~~~~g~~g~r~eke~-~ER~r~e~e~~e 446 (1021)
T PTZ00266 409 RKYPQDGATHCHAVNGHYGGRVDKDH-AERARIEKENAH 446 (1021)
T ss_pred cccccccccccccccCccccccchhH-HHHHHHHHHHHH
Confidence 44566666666666666666653322 566667766543
No 57
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=83.27 E-value=1.2e+02 Score=36.99 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=14.4
Q ss_pred HcCCcccCcccccCCCCCCCCCccCCCCcCcHHHHHH
Q 002103 535 EAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVS 571 (966)
Q Consensus 535 EAGII~GkLSG~~~~s~ddG~~tFrPD~PITRQELAs 571 (966)
..|-|-|.. .++.|+|.+|+ ++|++
T Consensus 97 ~~g~V~G~S----------~pFqf~~~~p~--eeLvt 121 (546)
T PF07888_consen 97 QKGEVRGAS----------TPFQFRAPKPL--EELVT 121 (546)
T ss_pred CCccEEEec----------CCcccCCCCcc--cccee
Confidence 346666653 35677776665 45543
No 58
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=82.79 E-value=65 Score=33.65 Aligned_cols=57 Identities=28% Similarity=0.387 Sum_probs=30.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHH
Q 002103 731 KERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIAR 787 (966)
Q Consensus 731 KerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~ 787 (966)
+.-..++.+.+.|.+...+++..-+.|...+-.+-.-+..++.|..+...+.+.|+.
T Consensus 89 ~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAg 145 (201)
T PF12072_consen 89 QREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIAG 145 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333455555555555555555555555555544444555555555555555555443
No 59
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=82.78 E-value=48 Score=33.44 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=13.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 002103 691 EKELSMEREKIDVVEKMAEEARQELERLR 719 (966)
Q Consensus 691 ~~el~~Er~~~~~vEk~~eea~~eLe~~r 719 (966)
.+|+..++++..+.+..+.....++...+
T Consensus 94 ~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 94 QEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444455555555555544444433333
No 60
>PRK12705 hypothetical protein; Provisional
Probab=82.51 E-value=1.2e+02 Score=36.52 Aligned_cols=14 Identities=14% Similarity=0.461 Sum_probs=9.6
Q ss_pred hcCcEEEEcCCccc
Q 002103 829 RQGIKVVVDKDLRE 842 (966)
Q Consensus 829 ~~gikv~vd~~~~~ 842 (966)
..|+.|+||+.-..
T Consensus 227 ~tGvdliiddtp~~ 240 (508)
T PRK12705 227 LTGVDLIIDDTPEA 240 (508)
T ss_pred hhCCceEecCCccc
Confidence 45888888875444
No 61
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=82.02 E-value=1.7e+02 Score=37.98 Aligned_cols=17 Identities=6% Similarity=0.305 Sum_probs=10.3
Q ss_pred ccCCCCcCcHHHHHHHH
Q 002103 557 FFLPESPLSRQDLVSWK 573 (966)
Q Consensus 557 tFrPD~PITRQELAsWK 573 (966)
+|==+...+..|.....
T Consensus 112 Y~INg~~~~~~dI~~l~ 128 (1163)
T COG1196 112 YYINGEKVRLKDIQDLL 128 (1163)
T ss_pred EEECCcEeeHHHHHHHH
Confidence 55556666666666543
No 62
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.12 E-value=80 Score=35.20 Aligned_cols=96 Identities=24% Similarity=0.259 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHHHHHH--------H
Q 002103 684 KEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVD---KIALMKERAAIESEMEILSKLRREVE--------E 752 (966)
Q Consensus 684 ~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e---~~~llKerAa~e~e~q~L~~Lr~EVd--------e 752 (966)
++|- -|+-++ .......++..++....+.+.+....+.- +..+...+++++.+...|..+..|++ .
T Consensus 137 ~~WY-eWR~~l--l~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~ 213 (325)
T PF08317_consen 137 KMWY-EWRMQL--LEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEA 213 (325)
T ss_pred HHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHH
Confidence 4553 455433 34555556666666666666665533322 22444455556666555555544432 3
Q ss_pred HHHHhhhcceehhhHHHHHHHHHHHHHHHH
Q 002103 753 QLESLMSNKVEISYEKERINMLRKEAENEN 782 (966)
Q Consensus 753 ~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~ 782 (966)
.-+.|+..+.+|..-+..|..|+.+++...
T Consensus 214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~ 243 (325)
T PF08317_consen 214 LRQELAEQKEEIEAKKKELAELQEELEELE 243 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433333
No 63
>PRK09039 hypothetical protein; Validated
Probab=80.70 E-value=1.1e+02 Score=34.77 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=36.1
Q ss_pred HHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002103 754 LESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMAR 803 (966)
Q Consensus 754 ~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR 803 (966)
-+.|...+.+|...+-.++.|+.+++.=...+..++..|++=++...-++
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~ 171 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQ 171 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777788888888888888888777777777777766555444443
No 64
>PRK04863 mukB cell division protein MukB; Provisional
Probab=80.51 E-value=1.5e+02 Score=40.06 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=24.5
Q ss_pred CCccHHHHHHHHHHhhccccccccccccccccccCCCCCCccCCCCCCCChHHHHHHHHcCCcccCc
Q 002103 477 DLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKL 543 (966)
Q Consensus 477 epITRaEFARWLVrA~n~L~Rnp~srV~Pa~~isgste~aF~DVppsDPDF~yIQaAAEAGII~GkL 543 (966)
.++|..|+-.++-...+ .....|..+ -.|-..+...|+++..+
T Consensus 146 ~~~ti~Elk~~i~e~~G------------------l~~~qF~ri------~~Y~~~Ll~qG~f~~~L 188 (1486)
T PRK04863 146 RVLTLNELKDKAAALEG------------------VQFKQFNSI------TDYHSLMFDLGIIPRRL 188 (1486)
T ss_pred ccCCHHHHHHHHHHhcC------------------CceeeeccH------HHHHHHHHHCCCchhhh
Confidence 46788888777655322 111235554 34555566668887654
No 65
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=79.76 E-value=1.9e+02 Score=37.06 Aligned_cols=111 Identities=18% Similarity=0.253 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhhhhHHHHHHHHHHHHHHH--
Q 002103 683 EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRA-----------EREVDKIALMKERAAIESEMEILSKLRRE-- 749 (966)
Q Consensus 683 ~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~-----------ere~e~~~llKerAa~e~e~q~L~~Lr~E-- 749 (966)
+.+++ .|..-|-.|....++.=|+.++-+.+|.+-++ --+.++-.+-.++|+|.|.. ..-|..
T Consensus 272 m~qlk-~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~L---lEarrk~e 347 (1265)
T KOG0976|consen 272 MRQLK-AKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCAL---LEARRKAE 347 (1265)
T ss_pred HHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhc
Confidence 45553 56666666655555555555554444444333 22344556667777777653 333333
Q ss_pred -HHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002103 750 -VEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERK 797 (966)
Q Consensus 750 -Vde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ekk 797 (966)
.|+.++.|--.+.+....-.+|+.+.+..+.+.|.+..++.+++--..
T Consensus 348 gfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQid 396 (1265)
T KOG0976|consen 348 GFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQID 396 (1265)
T ss_pred chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555556666666666666666666666554443
No 66
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=79.39 E-value=1.1e+02 Score=38.61 Aligned_cols=169 Identities=21% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 002103 655 VNEELQRIEAESAAENAVSEHSALVAEV-EKEINESFEKELSMEREKIDV-------VEKMAEEARQELERLRAEREVDK 726 (966)
Q Consensus 655 v~eEL~RlEAE~~a~~av~~~~~l~~~~-~~di~~~f~~el~~Er~~~~~-------vEk~~eea~~eLe~~r~ere~e~ 726 (966)
+...|.++.+|+-.-.+......=...- .-+|+.||..+++.||....+ ....|.....|+++...+.+.--
T Consensus 1 Lq~ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~Lq 80 (775)
T PF10174_consen 1 LQAQLERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQ 80 (775)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHH---------HHHHHhhhcceehhhH----HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002103 727 IALMKERAAIESEMEILSKLRREVE---------EQLESLMSNKVEISYE----KERINMLRKEAENENQEIARLQYELE 793 (966)
Q Consensus 727 ~~llKerAa~e~e~q~L~~Lr~EVd---------e~~q~L~s~kvei~~E----k~~l~kL~~~~e~~~q~i~~~k~~LE 793 (966)
..| |-+.-+..=.+-|.+-..+.+ +++.+|-.++=....| +..+++++..++.-++.+.....+++
T Consensus 81 eEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~ 159 (775)
T PF10174_consen 81 EEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIE 159 (775)
T ss_pred HHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH--------------HHHHHhHHHHHHHHHHHHHHHHHHhhHHhh
Q 002103 794 VERKAL--------------SMARAWAEDEAKRAREQAKALEGARDRWER 829 (966)
Q Consensus 794 ~EkkAL--------------~maR~WaEdEA~r~~e~A~vLEea~~rW~~ 829 (966)
-=.++| .|.+.-++.|+...+ |+....+|++
T Consensus 160 kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~-----le~lle~~e~ 204 (775)
T PF10174_consen 160 KLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMR-----LESLLERKEK 204 (775)
T ss_pred HHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHH
No 67
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=79.34 E-value=1.8e+02 Score=36.94 Aligned_cols=188 Identities=19% Similarity=0.291 Sum_probs=106.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHH
Q 002103 698 REKIDVVEKMAEEARQELERLRAEREVDKIALMKER------AAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERI 771 (966)
Q Consensus 698 r~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKer------Aa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l 771 (966)
|.+.++.+........-|+++-.=-+....+|+++. +|+.-|+..-.-|++||.+---...+ .-|.-++
T Consensus 91 r~~lea~~~~w~kl~~~l~el~~wl~~kd~el~~q~p~ggd~~avq~q~~~~~a~~re~k~k~~~~~s-----~~e~a~~ 165 (966)
T KOG4286|consen 91 RSHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTKEPVIMS-----TLETARI 165 (966)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhhcccHHHH-----HHHHHHH
Confidence 444444444444444444444332333334555543 68888899989999998763222211 2244444
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHhhcCcEEEEcCCccccccccchhh
Q 002103 772 NMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWV 851 (966)
Q Consensus 772 ~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w~ 851 (966)
-=.+-.+|...+ .+-.++++-|-.|-.+.| -.+-+| |++..-|++-||.++ .|
T Consensus 166 fl~~~p~e~~e~--~~~~~e~~p~~r~q~~~r--------~~~kqa---~~~~~~we~l~~~~~-------------~w- 218 (966)
T KOG4286|consen 166 FLTEQPLEGLEK--YQEPRELPPEERAQNVTR--------LLRKQA---EEVNTEWEKLNLHSA-------------DW- 218 (966)
T ss_pred HHhcCCCcchhh--cCCcccCCHHHHHHHHHH--------HHHHHH---HHHHHHHHHhCcchh-------------hH-
Confidence 444444444444 455566665555444433 233344 677788999998763 35
Q ss_pred hcccccchHHHHHhHHHHHHHHHHhhhhcc------cchHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002103 852 NAGKQFSVDQTVSRAQSLVDKLKAMANDVS------GKSKEIINTII---HKILLFISNLKKWASKASMRAAELKDATI 921 (966)
Q Consensus 852 ~~~~~~~~~~~~~ra~~l~~klk~m~~~~~------~~~~~~~~~~~---~~i~~~i~~l~~~~~~~~~~~~~~~~~~~ 921 (966)
+-.|+.|+.|-+.|-..+..+..+++ +--+-|=+-+| +--++-|..+|+.++.+...++.+.|+|.
T Consensus 219 ----~k~v~~~le~l~elq~a~~el~~~l~~ae~~~~~w~pvgdl~idsl~~h~e~~~~~~~ei~p~~~~v~~vndla~ 293 (966)
T KOG4286|consen 219 ----QRKIDETLERLQELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLKENVSHVNDLAR 293 (966)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhccccHHHHHHhHHHHHHHHHHHHHhhcchHhhchhhHHHHHH
Confidence 35688999888887777776666655 11111111222 22234456677888888877777777754
No 68
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=79.21 E-value=78 Score=32.26 Aligned_cols=11 Identities=45% Similarity=0.652 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 002103 655 VNEELQRIEAE 665 (966)
Q Consensus 655 v~eEL~RlEAE 665 (966)
|.++|.|.+.+
T Consensus 8 v~~kLK~~~~e 18 (140)
T PF10473_consen 8 VEEKLKESESE 18 (140)
T ss_pred HHHHHHHHHHh
Confidence 34444444433
No 69
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=79.02 E-value=63 Score=41.83 Aligned_cols=84 Identities=20% Similarity=0.155 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002103 743 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEG 822 (966)
Q Consensus 743 L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEe 822 (966)
+.++......+...+.+-.-.+.-.+..+.+|+.+.....++.-++.-+|.....-|..+.+=--.=.|+.+-++ ++ +
T Consensus 418 ver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~e-av-e 495 (1141)
T KOG0018|consen 418 VERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHEGSRRSRKQE-AV-E 495 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHH-HH-H
Confidence 345555556666666666666777777888888888888888888888888887777777443222233333332 22 3
Q ss_pred HhhHHh
Q 002103 823 ARDRWE 828 (966)
Q Consensus 823 a~~rW~ 828 (966)
+-.||-
T Consensus 496 ~lKr~f 501 (1141)
T KOG0018|consen 496 ALKRLF 501 (1141)
T ss_pred HHHHhC
Confidence 456664
No 70
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=78.97 E-value=14 Score=45.73 Aligned_cols=58 Identities=26% Similarity=0.323 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceeh
Q 002103 700 KIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEI 764 (966)
Q Consensus 700 ~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei 764 (966)
-++..++++.+-..+++++=. .|-++|..++.+++.+..++.|++++.+.|..++-++
T Consensus 503 ii~~A~~~~~~~~~~~~~li~-------~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 560 (782)
T PRK00409 503 IIEEAKKLIGEDKEKLNELIA-------SLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL 560 (782)
T ss_pred HHHHHHHHHhhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444454444445544444 4445555555555555555555555555544443333
No 71
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=78.92 E-value=37 Score=42.22 Aligned_cols=47 Identities=28% Similarity=0.343 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHHHh
Q 002103 711 ARQELERLRAEREVDKIALMKERAAIESE-MEILSKLRREVEEQLESL 757 (966)
Q Consensus 711 a~~eLe~~r~ere~e~~~llKerAa~e~e-~q~L~~Lr~EVde~~q~L 757 (966)
.+.++++++.+.++.+..|-+++..++.+ .+++..+++|..++++.+
T Consensus 530 ~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a 577 (771)
T TIGR01069 530 KNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKAL 577 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433333332 234445555555555444
No 72
>PRK03918 chromosome segregation protein; Provisional
Probab=78.62 E-value=1.7e+02 Score=35.94 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=15.1
Q ss_pred HHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHH
Q 002103 751 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIA 786 (966)
Q Consensus 751 de~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~ 786 (966)
...++.|-.....+-.+.+.+++-..+++.+.+.+.
T Consensus 306 ~~~~~~l~~~~~~l~~~~~~l~~~l~~~e~~~~~~~ 341 (880)
T PRK03918 306 LDELREIEKRLSRLEEEINGIEERIKELEEKEERLE 341 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443444444444444444433333
No 73
>PRK11281 hypothetical protein; Provisional
Probab=78.36 E-value=2.3e+02 Score=37.26 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=15.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhHHhh
Q 002103 803 RAWAEDEAKRAREQAKALEGARDRWER 829 (966)
Q Consensus 803 R~WaEdEA~r~~e~A~vLEea~~rW~~ 829 (966)
|.++..+-.+-+++-+.|.++-..++.
T Consensus 229 ~d~~~~~~~~~~~~~~~lq~~in~kr~ 255 (1113)
T PRK11281 229 RDYLTARIQRLEHQLQLLQEAINSKRL 255 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555666666666665553
No 74
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=77.94 E-value=44 Score=37.60 Aligned_cols=81 Identities=17% Similarity=0.216 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHhhcCcEEEEcCCccccccccchh
Q 002103 771 INMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMW 850 (966)
Q Consensus 771 l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w 850 (966)
|+.|...+-..+.++.+...+||..|.++..++.=..+=-...++|-..| ++|||-++=| .-..+...++.|
T Consensus 121 lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli-------~khGlVlv~~-~~ngd~~~~~~~ 192 (302)
T PF09738_consen 121 LEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELI-------EKHGLVLVPD-ATNGDTSDEPNN 192 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCeeeCCC-CCCCccccCccc
Confidence 33333333344444455566788888888877754433222334444444 5799988766 555566666666
Q ss_pred hhcccccch
Q 002103 851 VNAGKQFSV 859 (966)
Q Consensus 851 ~~~~~~~~~ 859 (966)
.-.++..-|
T Consensus 193 ~~~~~~~~v 201 (302)
T PF09738_consen 193 VGHPKRALV 201 (302)
T ss_pred cCCCccccc
Confidence 665555444
No 75
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=77.88 E-value=1.6e+02 Score=35.00 Aligned_cols=81 Identities=22% Similarity=0.345 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcce
Q 002103 683 EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKV 762 (966)
Q Consensus 683 ~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kv 762 (966)
+.+|. .-..||..=.....++|---+.|++||+.-++||+.-...+-.-|--+-.-.|+|.+| -+|+|+|-++=-
T Consensus 80 ~~qlr-~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~----t~Q~q~lqtrl~ 154 (499)
T COG4372 80 RPQLR-ALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARL----TKQAQDLQTRLK 154 (499)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 44443 2344454444445555555566777777777776643332222222222233444443 345555544433
Q ss_pred ehhhHH
Q 002103 763 EISYEK 768 (966)
Q Consensus 763 ei~~Ek 768 (966)
.++.+.
T Consensus 155 ~l~~qr 160 (499)
T COG4372 155 TLAEQR 160 (499)
T ss_pred HHHHHH
Confidence 344433
No 76
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=77.54 E-value=1.8e+02 Score=35.40 Aligned_cols=97 Identities=18% Similarity=0.206 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002103 678 LVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESL 757 (966)
Q Consensus 678 l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L 757 (966)
+++++++|++.+|...-+ +- ...... .-..+|++...+.+.+...+-.+.+.++.+.+.+ ..++++.-+.+
T Consensus 183 ~~~~L~~dl~~~~~~~~~-~~-~~~~~~----~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a---~~~l~~l~~~~ 253 (650)
T TIGR03185 183 LIDRLAGDLTNVLRRRKK-SE-LPSSIL----SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEA---QRSLESLEKKF 253 (650)
T ss_pred HHHHHHHHHHHHHHHHHh-cc-cchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 477778888887764322 11 111222 2233333333333333334433444444433333 23333333333
Q ss_pred hhcceehhhHHHHHHHHHHHHHHHHH
Q 002103 758 MSNKVEISYEKERINMLRKEAENENQ 783 (966)
Q Consensus 758 ~s~kvei~~Ek~~l~kL~~~~e~~~q 783 (966)
..+--....|++.|++-...++.+..
T Consensus 254 ~~~GG~~~~~r~~Le~ei~~le~e~~ 279 (650)
T TIGR03185 254 RSEGGDLFEEREQLERQLKEIEAARK 279 (650)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555554444444433
No 77
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=76.73 E-value=2.7e+02 Score=37.14 Aligned_cols=14 Identities=21% Similarity=0.095 Sum_probs=11.3
Q ss_pred CCCCccHHHHHHHH
Q 002103 475 PGDLCIRREYARWL 488 (966)
Q Consensus 475 PnepITRaEFARWL 488 (966)
.+.|+||.+|..+|
T Consensus 139 ~~~plt~~~l~~~l 152 (1353)
T TIGR02680 139 AGIPLTRDRLKEAL 152 (1353)
T ss_pred CCccCCHHHHHHHh
Confidence 37899999988765
No 78
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.58 E-value=2.7e+02 Score=37.02 Aligned_cols=80 Identities=28% Similarity=0.310 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002103 740 MEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKA 819 (966)
Q Consensus 740 ~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~v 819 (966)
.+++..++++.|+++..|--+-.-|..|+..+ ++++.-....+.++++++.+=..=|.||-.-.++.-++.-+--.-
T Consensus 453 ~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~---ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~ 529 (1293)
T KOG0996|consen 453 EELLEKEERELDEILDSLKQETEGIREEIEKL---EKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGK 529 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666655555555555444333 334444444445555555554444555555455544444444444
Q ss_pred HHH
Q 002103 820 LEG 822 (966)
Q Consensus 820 LEe 822 (966)
|+.
T Consensus 530 L~~ 532 (1293)
T KOG0996|consen 530 LLA 532 (1293)
T ss_pred HHH
Confidence 443
No 79
>PRK09039 hypothetical protein; Validated
Probab=75.60 E-value=1.5e+02 Score=33.66 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=15.3
Q ss_pred hccchhhHHHHHHHHHHHHHhhHH
Q 002103 648 IGEASDAVNEELQRIEAESAAENA 671 (966)
Q Consensus 648 ~G~~~e~v~eEL~RlEAE~~a~~a 671 (966)
-...-.+..+||++|+++ +++.+
T Consensus 44 Ls~~i~~~~~eL~~L~~q-Ia~L~ 66 (343)
T PRK09039 44 LSREISGKDSALDRLNSQ-IAELA 66 (343)
T ss_pred HHHHHhhHHHHHHHHHHH-HHHHH
Confidence 455566777888888876 44444
No 80
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.57 E-value=76 Score=39.47 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=18.8
Q ss_pred HHHHHHHHhccchhhHHHH-HHHHHHHHHhhHHHHhhHH
Q 002103 640 AQAAVALAIGEASDAVNEE-LQRIEAESAAENAVSEHSA 677 (966)
Q Consensus 640 AEAAAaL~~G~~~e~v~eE-L~RlEAE~~a~~av~~~~~ 677 (966)
.|.-.+|. ++.+.+++| |.+.+. |+.+...|..
T Consensus 535 ~E~l~lL~--~a~~vlreeYi~~~~~---ar~ei~~rv~ 568 (717)
T PF10168_consen 535 QECLELLS--QATKVLREEYIEKQDL---AREEIQRRVK 568 (717)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 34444443 778888888 666642 4444444433
No 81
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=75.09 E-value=1.4e+02 Score=37.41 Aligned_cols=112 Identities=21% Similarity=0.198 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH---HHhhhcceehhhHHHHHHHHH
Q 002103 699 EKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQL---ESLMSNKVEISYEKERINMLR 775 (966)
Q Consensus 699 ~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~---q~L~s~kvei~~Ek~~l~kL~ 775 (966)
.++.++|.-+-.++++|.+.++|.+.=....-.-+.+.++--..-.+||.|+.|.= +||+.+-.++-.|--.|||.-
T Consensus 34 ~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqv 113 (717)
T PF09730_consen 34 QRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQV 113 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34444555555566666666666554333322223333333333345677766654 456666666666666666665
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHH
Q 002103 776 KEAENENQEIARLQYELEVERKALSMARAWAEDEA 810 (966)
Q Consensus 776 ~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA 810 (966)
+-+-.-+=+..-+|-++..=.+=..++++=+||-+
T Consensus 114 s~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 114 SVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444443344444444333334444555554433
No 82
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=75.03 E-value=99 Score=39.99 Aligned_cols=144 Identities=16% Similarity=0.206 Sum_probs=92.6
Q ss_pred hhhHHHHHHHHHH-HHHhhHHHHhh----H---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHH
Q 002103 652 SDAVNEELQRIEA-ESAAENAVSEH----S---ALVAEVEKEINESFEKELSMEREKIDVVEK---MAEEARQELERLRA 720 (966)
Q Consensus 652 ~e~v~eEL~RlEA-E~~a~~av~~~----~---~l~~~~~~di~~~f~~el~~Er~~~~~vEk---~~eea~~eLe~~r~ 720 (966)
=.....||--|++ |..-+.+...- . .....+++|++++-+.+....+.+-.+.-+ .|++...|+..++.
T Consensus 176 ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~ 255 (1072)
T KOG0979|consen 176 LLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQ 255 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHH
Confidence 3455667766663 33333333321 1 223344889988887776555443332222 15556667777766
Q ss_pred HHH---HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002103 721 ERE---VDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERK 797 (966)
Q Consensus 721 ere---~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ekk 797 (966)
+++ ++.-.+.|+..-+++-++.|-+.++|.+..+..+.++ +-.=..++++....+...++.+.+++..||.=|+
T Consensus 256 ~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~---~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~ 332 (1072)
T KOG0979|consen 256 AKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRE---LNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKK 332 (1072)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 3455789999999999999999888888877666543 2233456777777777788888888888876555
Q ss_pred H
Q 002103 798 A 798 (966)
Q Consensus 798 A 798 (966)
+
T Consensus 333 ~ 333 (1072)
T KOG0979|consen 333 A 333 (1072)
T ss_pred H
Confidence 4
No 83
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=74.55 E-value=64 Score=35.04 Aligned_cols=47 Identities=28% Similarity=0.189 Sum_probs=32.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 002103 694 LSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEME 741 (966)
Q Consensus 694 l~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q 741 (966)
|..=|.|..++||+..+.+.|++.++.+. +-+.+|-||+..+..|+-
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~ 49 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERM 49 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34447888889999988888888877665 555555555555555543
No 84
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=74.35 E-value=1.4e+02 Score=32.61 Aligned_cols=32 Identities=16% Similarity=0.383 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002103 689 SFEKELSMEREKIDVVEKMAEEARQELERLRA 720 (966)
Q Consensus 689 ~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ 720 (966)
.+..++...+..+...++-+..+..++.+.+.
T Consensus 132 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 163 (301)
T PF14362_consen 132 SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQ 163 (301)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333333333333
No 85
>PHA02562 46 endonuclease subunit; Provisional
Probab=74.34 E-value=1.8e+02 Score=33.88 Aligned_cols=11 Identities=9% Similarity=0.238 Sum_probs=4.5
Q ss_pred HHHHHHhhHHh
Q 002103 818 KALEGARDRWE 828 (966)
Q Consensus 818 ~vLEea~~rW~ 828 (966)
.-++....-|+
T Consensus 272 ~~~~~~~~~~~ 282 (562)
T PHA02562 272 EQFQKVIKMYE 282 (562)
T ss_pred HHHHHHHHHhc
Confidence 33344444443
No 86
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=73.91 E-value=1.2e+02 Score=36.26 Aligned_cols=35 Identities=37% Similarity=0.365 Sum_probs=27.1
Q ss_pred HhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002103 788 LQYELEVERKALSMARAWAEDEAKRAREQAKALEG 822 (966)
Q Consensus 788 ~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEe 822 (966)
||+.-|+|.+-+.+-|.=+|.+-+-|+|-|.-|..
T Consensus 341 Lq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkK 375 (575)
T KOG4403|consen 341 LQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKK 375 (575)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 46666778888888899999888888877766654
No 87
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=73.58 E-value=41 Score=34.15 Aligned_cols=79 Identities=28% Similarity=0.377 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002103 743 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEG 822 (966)
Q Consensus 743 L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEe 822 (966)
|..|..+..+.++.+-.+-..--.=.+.|+-+..+++.|-+.+..+--.||++.+|+ ..|++|-++|++.++.
T Consensus 3 LYel~~~~~~l~~~~e~~~~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~-------k~E~krL~~rkk~~e~ 75 (162)
T PF05565_consen 3 LYELTDEYLELLELLEEGDLDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAI-------KAEIKRLQERKKSIEN 75 (162)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 444555555555444443222112246788889999999999999999999988764 6899999999999999
Q ss_pred HhhHHh
Q 002103 823 ARDRWE 828 (966)
Q Consensus 823 a~~rW~ 828 (966)
-..|++
T Consensus 76 ~~~~Lk 81 (162)
T PF05565_consen 76 RIDRLK 81 (162)
T ss_pred HHHHHH
Confidence 888877
No 88
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=73.21 E-value=45 Score=42.99 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=7.1
Q ss_pred HHHhHHHHHHHHHHhh
Q 002103 862 TVSRAQSLVDKLKAMA 877 (966)
Q Consensus 862 ~~~ra~~l~~klk~m~ 877 (966)
...|-..--|-+..|+
T Consensus 663 ~~~~~~~~~~~~~~~~ 678 (1021)
T PTZ00266 663 NFSRGKDSSDHVSSYK 678 (1021)
T ss_pred cccccccccchhhccc
Confidence 3444444444444443
No 89
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=72.18 E-value=1.6e+02 Score=32.45 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002103 768 KERINMLRKEAENENQEIARLQYELE 793 (966)
Q Consensus 768 k~~l~kL~~~~e~~~q~i~~~k~~LE 793 (966)
+..+..++.++..-..++.+++..++
T Consensus 202 ~~~~~~~~~~l~~~~~~l~~~~~~l~ 227 (423)
T TIGR01843 202 ERERAEAQGELGRLEAELEVLKRQID 227 (423)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 90
>PRK12705 hypothetical protein; Provisional
Probab=72.08 E-value=1.1e+02 Score=36.80 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=29.9
Q ss_pred HHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002103 750 VEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRARE 815 (966)
Q Consensus 750 Vde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e 815 (966)
++..-+.|...+-.+...++.|+++..+...+.+.+..+.. -+|-.++-.=+|+|+++.-+
T Consensus 100 l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~ia~lt~-----~eak~~l~~~~~~~~~~e~~ 160 (508)
T PRK12705 100 LDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTP-----EQARKLLLKLLDAELEEEKA 160 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-----HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444455543333333444433332 24666777777887775433
No 91
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=72.01 E-value=1.1e+02 Score=38.04 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHH
Q 002103 652 SDAVNEELQRIEA 664 (966)
Q Consensus 652 ~e~v~eEL~RlEA 664 (966)
.+.+.|-|+|||-
T Consensus 106 ~~~yQerLaRLe~ 118 (861)
T KOG1899|consen 106 YPEYQERLARLEM 118 (861)
T ss_pred chHHHHHHHHHhc
Confidence 4668899999993
No 92
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=71.80 E-value=2.7e+02 Score=34.90 Aligned_cols=16 Identities=6% Similarity=0.397 Sum_probs=10.6
Q ss_pred ccCCCCcCcHHHHHHH
Q 002103 557 FFLPESPLSRQDLVSW 572 (966)
Q Consensus 557 tFrPD~PITRQELAsW 572 (966)
+|--+.++|+.++...
T Consensus 110 ~~~n~~~~~~~~~~~~ 125 (1164)
T TIGR02169 110 YYLNGQRVRLSEIHDF 125 (1164)
T ss_pred EEECCccccHHHHHHH
Confidence 4555677888776654
No 93
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=71.80 E-value=1.4e+02 Score=31.41 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 002103 674 EHSALVAEVEKEINESFE 691 (966)
Q Consensus 674 ~~~~l~~~~~~di~~~f~ 691 (966)
+++.|+.+++..+...+.
T Consensus 81 ERGlLL~rvrde~~~~l~ 98 (189)
T PF10211_consen 81 ERGLLLLRVRDEYRMTLD 98 (189)
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 468888888777766555
No 94
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=71.48 E-value=2e+02 Score=34.41 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=20.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 002103 691 EKELSMEREKIDVVEKMAEEARQELERL 718 (966)
Q Consensus 691 ~~el~~Er~~~~~vEk~~eea~~eLe~~ 718 (966)
+++|..|+.+..-.||+.+.+..=++-+
T Consensus 211 ~e~L~~e~~~L~n~e~i~~~~~~~~~~L 238 (563)
T TIGR00634 211 DEALEAEQQRLSNLEKLRELSQNALAAL 238 (563)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 4567788888888888877666655555
No 95
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=70.94 E-value=2.2e+02 Score=33.51 Aligned_cols=167 Identities=26% Similarity=0.292 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhHHHHhh-HHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002103 658 ELQRIEAESAAENAVSEH-SALVAEVEKEIN---ESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKER 733 (966)
Q Consensus 658 EL~RlEAE~~a~~av~~~-~~l~~~~~~di~---~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKer 733 (966)
=+..|||++.+..--+++ ..+++-++|+-+ +..+= ..|..|..+.+|-- .-.-|+++|...+.-..-|+-|
T Consensus 119 li~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEF--e~~e~kK~E~~k~K--l~~qLeeEk~RHeqis~mLilE- 193 (561)
T KOG1103|consen 119 LIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEF--EIEEKKKAEIAKDK--LEMQLEEEKKRHEQISLMLILE- 193 (561)
T ss_pred HHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-
Confidence 356789888777655553 335554444433 33222 23334444444433 2355666766665544444433
Q ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhhhcc-------eehhhHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002103 734 AAIESEMEILS--KLRREVEEQLESLMSNK-------VEISYEKE-------RINMLRKEAENENQEIARLQYELEVERK 797 (966)
Q Consensus 734 Aa~e~e~q~L~--~Lr~EVde~~q~L~s~k-------vei~~Ek~-------~l~kL~~~~e~~~q~i~~~k~~LE~Ekk 797 (966)
|.+-+|. .++...+++.=.|-.++ -+...|++ .++||.++..- +...|+.+||.|-+
T Consensus 194 ----cKka~~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i~Efdi---Ere~LRAel~ree~ 266 (561)
T KOG1103|consen 194 ----CKKALLKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDI---EREFLRAELEREEK 266 (561)
T ss_pred ----HHHHHHHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3322221 12222333333333333 22334443 34444444332 23345556666655
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhHHhhc---CcEEEEcCCc
Q 002103 798 ALSMARAWAEDEAKRAREQAKALEGARDRWERQ---GIKVVVDKDL 840 (966)
Q Consensus 798 AL~maR~WaEdEA~r~~e~A~vLEea~~rW~~~---gikv~vd~~~ 840 (966)
--.|+. +|-.--++--+-||---+.-+++ --.|.|.++-
T Consensus 267 r~K~lK----eEmeSLkeiVkdlEA~hQh~~pNeqLk~pvtvskgt 308 (561)
T KOG1103|consen 267 RQKMLK----EEMESLKEIVKDLEADHQHLRPNEQLKGPVTVSKGT 308 (561)
T ss_pred HHHHHH----HHHHHHHHHHhhhhhhhhhcCccccccCceeecccc
Confidence 555543 33334445555555444433322 2245565543
No 96
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=70.92 E-value=1.9e+02 Score=32.74 Aligned_cols=157 Identities=20% Similarity=0.199 Sum_probs=86.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHHHHH
Q 002103 673 SEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREV---DKIALMKERAAIESEMEILSKLRRE 749 (966)
Q Consensus 673 ~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~---e~~~llKerAa~e~e~q~L~~Lr~E 749 (966)
-.++.|.++ ++|= -|.-++. .--...+++.++....+.+.|...-+. -+..+.+..+.+..|...|..+..|
T Consensus 123 K~~aRl~ak--~~WY-eWR~kll--egLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 123 KTFARLEAK--KMWY-EWRMKLL--EGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHH--HHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345556665 6773 5776652 233444566666666666665543322 2336667778888888888887777
Q ss_pred HHHH-HHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHH--------HHHHH
Q 002103 750 VEEQ-LESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRARE--------QAKAL 820 (966)
Q Consensus 750 Vde~-~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e--------~A~vL 820 (966)
++.- -.-|..-|-++......++..+.+++..++.+.+++..++.-.+=...++.=+ .||.+..+ -..-|
T Consensus 198 ~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I-~~ae~~~~~~r~~t~~Ei~~L 276 (312)
T smart00787 198 LEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI-AEAEKKLEQCRGFTFKEIEKL 276 (312)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCHHHHHHH
Confidence 6441 11122223455566666666666666666666666666665444444444322 23444333 23334
Q ss_pred HHHhhHHh-hcCcEEE
Q 002103 821 EGARDRWE-RQGIKVV 835 (966)
Q Consensus 821 Eea~~rW~-~~gikv~ 835 (966)
..-.+-++ -+|+++.
T Consensus 277 k~~~~~Le~l~g~~~~ 292 (312)
T smart00787 277 KEQLKLLQSLTGWKIT 292 (312)
T ss_pred HHHHHHHHHHhCCeeE
Confidence 44444444 5677754
No 97
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=70.87 E-value=1.7e+02 Score=34.43 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002103 652 SDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEE 710 (966)
Q Consensus 652 ~e~v~eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~ee 710 (966)
-..+.+||.-+......-.--. ..|.++.+.|+ .++-+.|.+||-|.+-+|..+.+
T Consensus 214 l~~~~~el~eik~~~~~L~~~~--e~Lk~~~~~e~-~~~~~~LqEEr~R~erLEeqlNd 269 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESI--EKLKEQYQREY-QFILEALQEERYRYERLEEQLND 269 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456677766655443222222 24777788898 49999999999998887766633
No 98
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=70.79 E-value=2.2e+02 Score=34.44 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=27.1
Q ss_pred CCChHHHHHHHHcCCcccCcccccCCCCCCCCCccCCCCcCcHHHHHHHHHH
Q 002103 524 DPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMA 575 (966)
Q Consensus 524 DPDF~yIQaAAEAGII~GkLSG~~~~s~ddG~~tFrPD~PITRQELAsWKVA 575 (966)
+-.|.+|..+. =||.|||.. .+-|.+...-|=+.+|+..-|
T Consensus 75 ~a~vdhI~nlr--rIiagyl~~---------aygY~~~~a~~lA~fit~YNA 115 (489)
T PF05262_consen 75 NARVDHINNLR--RIIAGYLEA---------AYGYSDEDAETLATFITIYNA 115 (489)
T ss_pred CCCccHHHHHH--HHHHHHHHH---------hcCCChhhHHHHHHHHHHHHH
Confidence 56788888775 478888853 234777776666666655333
No 99
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=70.26 E-value=51 Score=34.45 Aligned_cols=81 Identities=22% Similarity=0.358 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002103 710 EARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQ 789 (966)
Q Consensus 710 ea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k 789 (966)
+...+|+.++..|+.. .+|+.+-.+.+.|..-..++...|+.+. ....++|++|..++..-++++.+-.
T Consensus 87 ~l~~~i~~~~~~r~~~-----~eR~~~l~~l~~l~~~~~~l~~el~~~~------~~Dp~~i~~~~~~~~~~~~~anrwT 155 (188)
T PF03962_consen 87 ELEEKIEEAKKGREES-----EEREELLEELEELKKELKELKKELEKYS------ENDPEKIEKLKEEIKIAKEAANRWT 155 (188)
T ss_pred HHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555544443 4444444444433333333333333222 1356788888888887777776655
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 002103 790 YELEVERKALSMARAWAED 808 (966)
Q Consensus 790 ~~LE~EkkAL~maR~WaEd 808 (966)
-- +-++++|+..
T Consensus 156 DN-------I~~l~~~~~~ 167 (188)
T PF03962_consen 156 DN-------IFSLKSYLKK 167 (188)
T ss_pred hh-------HHHHHHHHHH
Confidence 33 4467777754
No 100
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=69.84 E-value=3.5e+02 Score=35.43 Aligned_cols=62 Identities=18% Similarity=0.165 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHH
Q 002103 712 RQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEA 778 (966)
Q Consensus 712 ~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~ 778 (966)
...+-++|.+-+.+...+...++.+|.+...|...++|++.....+.-. .|..++++++..+
T Consensus 673 ~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~l~~qkee~~~~~~~~I~~-----~~~~~~~~~~~~~ 734 (1072)
T KOG0979|consen 673 LKLLKRERTKLNSELKSYQQRKERIENLVVDLDRQEEEYAASEAKKILD-----TEDMRIQSIRWHL 734 (1072)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHH
Confidence 3445556666666667888899999999999999999999887776543 3444444444333
No 101
>PRK10884 SH3 domain-containing protein; Provisional
Probab=69.77 E-value=43 Score=35.65 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=15.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q 002103 698 REKIDVVEKMAEEARQELERLRAE 721 (966)
Q Consensus 698 r~~~~~vEk~~eea~~eLe~~r~e 721 (966)
|.+..++|+-+++++.+|++.+.+
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 445556666666777777776644
No 102
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=69.56 E-value=1.1e+02 Score=37.32 Aligned_cols=97 Identities=25% Similarity=0.299 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccee
Q 002103 684 KEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVE 763 (966)
Q Consensus 684 ~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kve 763 (966)
+-|+.+|+.||..=|.-+.+..+--..+..|+.+++.+-++-+.-+.| .-+.+.--|.++++.+-+|..-..+
T Consensus 84 s~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~-------~~k~~~~~re~~~~~~~~l~~leAe 156 (546)
T KOG0977|consen 84 SGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEK-------AEKERRGAREKLDDYLSRLSELEAE 156 (546)
T ss_pred cchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHhhhhhhhhhH
Confidence 347778888877777766666666666666666655544333322222 2222333344555555555555555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 002103 764 ISYEKERINMLRKEAENENQEIAR 787 (966)
Q Consensus 764 i~~Ek~~l~kL~~~~e~~~q~i~~ 787 (966)
+.+=+.++.+|..++..=..+..+
T Consensus 157 ~~~~krr~~~le~e~~~Lk~en~r 180 (546)
T KOG0977|consen 157 INTLKRRIKALEDELKRLKAENSR 180 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 555555554444444333333333
No 103
>PRK03918 chromosome segregation protein; Provisional
Probab=68.77 E-value=2.9e+02 Score=34.07 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002103 701 IDVVEKMAEEARQELERL 718 (966)
Q Consensus 701 ~~~vEk~~eea~~eLe~~ 718 (966)
...+++-+.....+++++
T Consensus 202 ~~~l~~ei~~l~~e~~~l 219 (880)
T PRK03918 202 LEEVLREINEISSELPEL 219 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 104
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=68.35 E-value=1.9e+02 Score=31.71 Aligned_cols=32 Identities=13% Similarity=0.339 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 002103 683 EKEINESFEKELSMEREKIDVVEKMAEEARQE 714 (966)
Q Consensus 683 ~~di~~~f~~el~~Er~~~~~vEk~~eea~~e 714 (966)
+..+.+.+...+...+.+...+.+.+......
T Consensus 156 ~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~ 187 (319)
T PF02601_consen 156 RQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRR 187 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 45666777777777777766666666554443
No 105
>PRK04863 mukB cell division protein MukB; Provisional
Probab=67.86 E-value=4.5e+02 Score=35.84 Aligned_cols=55 Identities=24% Similarity=0.291 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 002103 766 YEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGAR 824 (966)
Q Consensus 766 ~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~ 824 (966)
.-++.+.++..+++.-.+++..++..+.....++..+ +.++..-+.....|+.|.
T Consensus 373 eleeeleeleeEleelEeeLeeLqeqLaelqqel~el----Q~el~q~qq~i~~Le~~~ 427 (1486)
T PRK04863 373 EADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQ----QTRAIQYQQAVQALERAK 427 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555544444433333333 334444455555555553
No 106
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=67.40 E-value=41 Score=37.65 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 002103 712 RQELERLRAEREVDKIALMKERAAIESEMEI 742 (966)
Q Consensus 712 ~~eLe~~r~ere~e~~~llKerAa~e~e~q~ 742 (966)
...|++++.+-.+++..|-+|++.++.|...
T Consensus 52 l~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555566665555443
No 107
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=67.40 E-value=2.7e+02 Score=33.14 Aligned_cols=116 Identities=20% Similarity=0.220 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHHHHHhhhc
Q 002103 683 EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEM--EILSKLRREVEEQLESLMSN 760 (966)
Q Consensus 683 ~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~--q~L~~Lr~EVde~~q~L~s~ 760 (966)
+..+.+.|+++|..|=++..+ .+.++..++|...+.+.+++....++++-.-|... .-|..|+..|.++- ..+..
T Consensus 320 ~~~l~~~~~~~L~~eL~~~~~--~~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le-~~~~~ 396 (582)
T PF09731_consen 320 REELEEKYEEELRQELKRQEE--AHEEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALE-EALDA 396 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 456666777776665333322 24555566777777777777777776665544432 33556666666543 34555
Q ss_pred ceehhhHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHH
Q 002103 761 KVEISYEKERINMLRKEAENENQEIARL----QYELEVERKALSM 801 (966)
Q Consensus 761 kvei~~Ek~~l~kL~~~~e~~~q~i~~~----k~~LE~EkkAL~m 801 (966)
+.++..+..+++.|.--+..=...+..- .--|..|-.+|.-
T Consensus 397 ~~~~~~~~~~~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~~ 441 (582)
T PF09731_consen 397 RSEAEDENRRAQQLWLAVDALKSALDSGNAGSPRPFEDELRALKE 441 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHH
Confidence 6677777777877776666555555444 1334444444443
No 108
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=66.96 E-value=2.6e+02 Score=32.89 Aligned_cols=272 Identities=16% Similarity=0.186 Sum_probs=154.8
Q ss_pred HHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHHHHHhhh----
Q 002103 689 SFEKELSMEREKI-DVVEKMAEEARQELERLRAEREVDKIALMK----ERAAIESEMEILSKLRREVEEQLESLMS---- 759 (966)
Q Consensus 689 ~f~~el~~Er~~~-~~vEk~~eea~~eLe~~r~ere~e~~~llK----erAa~e~e~q~L~~Lr~EVde~~q~L~s---- 759 (966)
.+-+.+..|..++ .+||..+.++...|..--.+-+++...++. ..+-++..++-|..|..+|.+.++.=..
T Consensus 11 ~~~~~~~~e~~~i~~e~e~~i~~~~~~l~~~l~~~d~~i~~~~~~l~~d~~l~~~~~~~l~~~w~~v~~~~~~r~~~I~~ 90 (473)
T PF14643_consen 11 KALESFHEELASISEEVEPLILEAGEDLKQKLAESDEEIEEIFSKLEDDSALLEYSIQDLLELWDEVAEHSQKRKQWIKE 90 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666665544 458888888888777666666666555543 3456677788888888877774433211
Q ss_pred -cceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------HHHHHH--------------HhHHHHHHHHHHHHH
Q 002103 760 -NKVEISYEKERINMLRKEAENENQEIARLQYELEVERK------ALSMAR--------------AWAEDEAKRAREQAK 818 (966)
Q Consensus 760 -~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ekk------AL~maR--------------~WaEdEA~r~~e~A~ 818 (966)
..-=-..|++|..+|..-+..-...+.+.=+.+..|.+ |..|=. .-.+.+-++-+....
T Consensus 91 l~~~L~~~E~~R~~~l~~~l~~~~~~L~~ia~~~~~dv~rli~~ea~~iN~~ll~Nrra~a~L~~~L~~~~~~~e~~~~~ 170 (473)
T PF14643_consen 91 LDEDLEELEKERADKLKKVLRKYVEILEKIAHLLPPDVERLIEKEAMEINQALLGNRRAYADLFANLMEAELQRELSYRR 170 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112578899999988888888887777666654433 332211 112222223333344
Q ss_pred HHHHHhhHHhhcCcEEEEcC---CccccccccchhhhcccccchHHHHHhHHHHHH----HHHHhhhhc-ccchHHHHHH
Q 002103 819 ALEGARDRWERQGIKVVVDK---DLREESDAAVMWVNAGKQFSVDQTVSRAQSLVD----KLKAMANDV-SGKSKEIINT 890 (966)
Q Consensus 819 vLEea~~rW~~~gikv~vd~---~~~~~~~~~~~w~~~~~~~~~~~~~~ra~~l~~----klk~m~~~~-~~~~~~~~~~ 890 (966)
-.+...++|+..--...|.. .+.-+..-.|..+ ..-++.-...-..|.. -|..+..-. ...++.-+.+
T Consensus 171 ~w~~~~~~Wr~l~~~~~i~~f~~~~~s~~~~~P~~~----~~~~e~~~~~Q~~l~~~r~~~L~~l~~l~Pp~~t~~~v~e 246 (473)
T PF14643_consen 171 RWQDRVDDWRALRHERAIQEFREFMASEEFQNPPER----KQLLEQMRKEQVDLHEKRLELLQSLCDLLPPNLTKEKVEE 246 (473)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhCccccCCChHH----HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHH
Confidence 45666677775433322221 1111111111111 1111111111122222 222222111 2455666777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhh-hhhhhhhHHhhhhhc
Q 002103 891 IIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRV-AGDCREGVEKLTQRF 964 (966)
Q Consensus 891 ~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~-~~~c~~gv~k~~~rf 964 (966)
.+..+..+-..+-++......+.....++....+...++.++....+++..-.+.+-.+ ...|-.-|+++-++|
T Consensus 247 W~~~l~~l~~~~d~~~~~~~~~lr~~~E~~~~ec~~~ve~~k~~L~~~~~~~~eea~~lv~~~~~plv~~~q~~~ 321 (473)
T PF14643_consen 247 WYASLNALNEQIDEYHQQCMEKLRALYEKICQECLALVEKLKQELLDWKACTEEEAEELVNPEFLPLVGELQSEF 321 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777888888888888899999999999888666666444 456766666665554
No 109
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=66.86 E-value=2.1e+02 Score=31.64 Aligned_cols=66 Identities=23% Similarity=0.258 Sum_probs=30.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002103 729 LMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLR----KEAENENQEIARLQYELEVERKALSM 801 (966)
Q Consensus 729 llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~----~~~e~~~q~i~~~k~~LE~EkkAL~m 801 (966)
-.++..|+..|++.+-.=....+..+..|. .+.+.|++.. ..+......+...+..+|.|.+.+.-
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~-------~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELM-------EEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677766665443333333333332 2333333333 33333334445555556665555543
No 110
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=64.88 E-value=1.7e+02 Score=29.86 Aligned_cols=52 Identities=25% Similarity=0.397 Sum_probs=40.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHH
Q 002103 722 REVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEA 778 (966)
Q Consensus 722 re~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~ 778 (966)
|..-.+.+...|..+..+.++|..+..++.+.|..+..+ +| +.-|.+|..+.
T Consensus 61 r~~s~a~~~~rr~~L~~r~~~l~~v~~~a~~kL~~~~~~--~y---~~~l~~li~~~ 112 (188)
T PRK02292 61 QELSSAKLEAKRERLNARKEVLEDVRNQVEDEIASLDGD--KR---EELTKSLLDAA 112 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--hH---HHHHHHHHHhc
Confidence 444455667777899999999999999999999998875 22 56777777765
No 111
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=64.19 E-value=1.6e+02 Score=33.95 Aligned_cols=43 Identities=12% Similarity=0.251 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002103 688 ESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALM 730 (966)
Q Consensus 688 ~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~ll 730 (966)
+-|+--+..=+.....+++.+.+++..|+++..+..+.+..+-
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~ 258 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIE 258 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566555556788888999999999999999888777665443
No 112
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.69 E-value=3.3e+02 Score=32.81 Aligned_cols=20 Identities=0% Similarity=-0.160 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHhccchhh
Q 002103 635 KPVTNAQAAVALAIGEASDA 654 (966)
Q Consensus 635 KPVTRAEAAAaL~~G~~~e~ 654 (966)
..-+|.|-+++.++..|=|-
T Consensus 245 ~SrlkqEnlqLvhR~h~LEE 264 (502)
T KOG0982|consen 245 SSRLKQENLQLVHRYHMLEE 264 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34578888888888777543
No 113
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=63.67 E-value=4.6e+02 Score=34.51 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=11.7
Q ss_pred CCCCcCcHHHHHHHHHHh
Q 002103 559 LPESPLSRQDLVSWKMAL 576 (966)
Q Consensus 559 rPD~PITRQELAsWKVAL 576 (966)
.|..-+-+.++..|....
T Consensus 218 ~~~~~~~~~~i~~W~~~~ 235 (1201)
T PF12128_consen 218 PPKSRLKKNDIDDWLRDI 235 (1201)
T ss_pred chhhhcchhhHHHHHHHH
Confidence 344447778888887543
No 114
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=63.36 E-value=37 Score=31.25 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 002103 867 QSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRA 913 (966)
Q Consensus 867 ~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~ 913 (966)
+.|++.+..+...+...+.+.++.+-+++...+..+|+.+.++...+
T Consensus 8 ~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~ 54 (94)
T PF05957_consen 8 EQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQA 54 (94)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555554444433
No 115
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.35 E-value=3.7e+02 Score=33.26 Aligned_cols=127 Identities=20% Similarity=0.128 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHH
Q 002103 704 VEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQ 783 (966)
Q Consensus 704 vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q 783 (966)
=...|+....+++--+...++.+..+=+|-...|.|.|.|..-..++--+++. . .|+.+ -++++..+.+.-.+
T Consensus 274 D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~---Q--~iS~~--dve~mn~Er~~l~r 346 (581)
T KOG0995|consen 274 DVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL---Q--GISGE--DVERMNLERNKLKR 346 (581)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c--CCCHH--HHHHHHHHHHHHHH
Confidence 34567777777877788888888888888888888888765433333333221 1 33333 24455555555556
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHhhcCcEEEEc
Q 002103 784 EIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVD 837 (966)
Q Consensus 784 ~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~rW~~~gikv~vd 837 (966)
.+.+.+++++...+-+-=+-.-+++=++-..-...-|-...+|-...++..-++
T Consensus 347 ~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n 400 (581)
T KOG0995|consen 347 ELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKN 400 (581)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666666666665554433333334444444445555666677766665555555
No 116
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=63.06 E-value=30 Score=42.10 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=24.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHH
Q 002103 731 KERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKER 770 (966)
Q Consensus 731 KerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~ 770 (966)
.||-.||||+|-|-+-|-| +++|--+|+.|+.|+.+
T Consensus 653 ~erlrle~qRQrLERErmE----rERLEreRM~ve~eRr~ 688 (940)
T KOG4661|consen 653 AERLRLERQRQRLERERME----RERLERERMKVEEERRD 688 (940)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcc
Confidence 3455688888888776655 45777778888776543
No 117
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.84 E-value=26 Score=40.27 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002103 716 ERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESL 757 (966)
Q Consensus 716 e~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L 757 (966)
+++|..++++...+.+++++|..-.|.|..-..|+++|.++|
T Consensus 217 eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etL 258 (365)
T KOG2391|consen 217 EKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETL 258 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHH
Confidence 345556666667777777777777777777777777666655
No 118
>PLN03188 kinesin-12 family protein; Provisional
Probab=62.74 E-value=5.2e+02 Score=34.82 Aligned_cols=99 Identities=24% Similarity=0.250 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhHHhhcCcEEEEcCCccccccccchh
Q 002103 773 MLRKEAENENQEIARLQYELEVERKALSMARAWAEDEA--KRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMW 850 (966)
Q Consensus 773 kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA--~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w 850 (966)
.|+-|+|.-..-..+++.||+.||+.---| +|| +.++=|||.||.--+==++|
T Consensus 1069 elr~eles~r~l~Ekl~~EL~~eK~c~eel-----~~a~q~am~ghar~~e~ya~l~ek~-------------------- 1123 (1320)
T PLN03188 1069 ELRTELDASRALAEKQKHELDTEKRCAEEL-----KEAMQMAMEGHARMLEQYADLEEKH-------------------- 1123 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 567778887777788999999998643222 111 12455777777633222221
Q ss_pred hhcccccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Q 002103 851 VNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKK 904 (966)
Q Consensus 851 ~~~~~~~~~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~ 904 (966)
..+-.--.|-+.=|+-.|.-|++...|-.+ .+||.-+-.=||.||-
T Consensus 1124 ------~~ll~~hr~i~egi~dvkkaaakag~kg~~--~~f~~alaae~s~l~~ 1169 (1320)
T PLN03188 1124 ------IQLLARHRRIQEGIDDVKKAAARAGVRGAE--SKFINALAAEISALKV 1169 (1320)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhccccch--HHHHHHHHHHHHHHHH
Confidence 122222233366677777777777766666 6777777766777663
No 119
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=62.70 E-value=3.5e+02 Score=33.98 Aligned_cols=36 Identities=25% Similarity=0.232 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhhccee-hhhHHHHHHHHHHHHHHH
Q 002103 745 KLRREVEEQLESLMSNKVE-ISYEKERINMLRKEAENE 781 (966)
Q Consensus 745 ~Lr~EVde~~q~L~s~kve-i~~Ek~~l~kL~~~~e~~ 781 (966)
.|..-++.+++.+....=. -.+|++..++|. .++.+
T Consensus 611 ~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~-~~~~~ 647 (717)
T PF10168_consen 611 KLMKRVDRVLQLLNSQLPVLSEAEREFKKELE-RMKDQ 647 (717)
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH-HHHHH
Confidence 4555678888888654332 334655544443 34333
No 120
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.62 E-value=2.5e+02 Score=34.66 Aligned_cols=142 Identities=18% Similarity=0.216 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002103 676 SALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLE 755 (966)
Q Consensus 676 ~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q 755 (966)
+++.-+|+|+++. ++++ =.+.-+.++-+.+...|.+++|-+..+..+++- |- |-.|+.-..+|++.--+-+.
T Consensus 420 ~d~i~~le~e~~~-y~de----~~kaqaevdrlLeilkeveneKnDkdkkiaele--r~-~kdqnkkvaNlkHk~q~Ekk 491 (654)
T KOG4809|consen 420 ADQIKQLEKEASY-YRDE----CGKAQAEVDRLLEILKEVENEKNDKDKKIAELE--RH-MKDQNKKVANLKHKQQLEKK 491 (654)
T ss_pred HHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHhhhccccchhhhcC--ch-hhhhhhHHhhHHHHHHHHHH
Confidence 4455666777763 3433 345556667777888999999988877766654 22 22233333344443333333
Q ss_pred HhhhcceehhhHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHHHHHHHHH-HhHHHHHHHH---HHHHHHHHHHhh
Q 002103 756 SLMSNKVEISYEKERINMLRKE--AENENQEIARLQYELEVERKALSMAR-AWAEDEAKRA---REQAKALEGARD 825 (966)
Q Consensus 756 ~L~s~kvei~~Ek~~l~kL~~~--~e~~~q~i~~~k~~LE~EkkAL~maR-~WaEdEA~r~---~e~A~vLEea~~ 825 (966)
.-+-.-++|-.+.+.+-.-+.. ++...-++.++|.+|++=+--|++.| +-+|.|+--+ ++|-+.||++-.
T Consensus 492 k~aq~lee~rrred~~~d~sqhlq~eel~~alektkQel~~tkarl~stqqslaEke~HL~nLr~errk~Lee~le 567 (654)
T KOG4809|consen 492 KNAQLLEEVRRREDSMADNSQHLQIEELMNALEKTKQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILE 567 (654)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555555544322221 45555566677777777777676664 5667666443 356677777643
No 121
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=62.60 E-value=3.4e+02 Score=32.66 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002103 769 ERINMLRKEAENENQEIARLQYELEVERKALSMARA 804 (966)
Q Consensus 769 ~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~ 804 (966)
.++-.-+...+.++++..++--+|--|++-|+|.-.
T Consensus 356 ~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl 391 (502)
T KOG0982|consen 356 VRMNDILRRFQEEKEATQELIEELRKELEHLRRRKL 391 (502)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444667777777777777666666666543
No 122
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=62.54 E-value=3.5e+02 Score=32.75 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=12.4
Q ss_pred ccCCCCcccHHHHHHHHhcccccc
Q 002103 597 DIDKINPDAWPALLADLTAGEQGI 620 (966)
Q Consensus 597 D~dkI~~~A~~AV~aDL~aGDqgI 620 (966)
|.+-+...+.+.|...|...--||
T Consensus 120 ~~~~~~~~Y~~~v~~~l~~~k~Gl 143 (489)
T PF05262_consen 120 DLDYFKKKYKNVVIKNLTPEKAGL 143 (489)
T ss_pred CHHHHHHHhhHHHHhhcChhhccc
Confidence 444444555566665555444444
No 123
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=60.20 E-value=5.2e+02 Score=33.94 Aligned_cols=40 Identities=28% Similarity=0.273 Sum_probs=29.9
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002103 762 VEISYEKERINMLRKEAENENQEIARLQYELEVERKALSM 801 (966)
Q Consensus 762 vei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m 801 (966)
=--+.||+-.|||++++|.+|.++.+|+..-|-=+.=+.+
T Consensus 389 DlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~ 428 (1243)
T KOG0971|consen 389 DLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQ 428 (1243)
T ss_pred hcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3446788999999999999999999887765543333333
No 124
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=59.84 E-value=3.8e+02 Score=32.34 Aligned_cols=49 Identities=29% Similarity=0.281 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH--HHhhhhHHHHHHh-HHHHhhhhccc
Q 002103 896 LLFISNLKKWASKASMRAAELKDATI--LKAKGSVQELQQS-TAEFRSNLTEG 945 (966)
Q Consensus 896 ~~~i~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~ 945 (966)
..-|..|.+.-.++.+.|..|-.|-. +|+.|.|-|+|.. +.+. +++.+|
T Consensus 171 ~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~qLerILE~-sGL~~~ 222 (475)
T PRK10361 171 AHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEA-SGLREG 222 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHHHHHHHHHH-hCCCcC
Confidence 34455555566666667766666643 4788999888753 4443 344444
No 125
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=56.96 E-value=1.1e+02 Score=34.27 Aligned_cols=39 Identities=28% Similarity=0.385 Sum_probs=28.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002103 783 QEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALE 821 (966)
Q Consensus 783 q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLE 821 (966)
.....+-.++++..+-|+.-.-|.++|.+++.+....|-
T Consensus 198 ~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~ 236 (264)
T PF07246_consen 198 EDEKILHEELEARESGLRNESKWLEHELSDAKEDMIRLR 236 (264)
T ss_pred hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556777777788887899999999888776654
No 126
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=56.82 E-value=4.1e+02 Score=31.72 Aligned_cols=62 Identities=26% Similarity=0.377 Sum_probs=35.7
Q ss_pred HHHHhhhcceehhhHHHHHHHH-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HhHHHHHHHHH
Q 002103 753 QLESLMSNKVEISYEKERINML-----------RKEAENENQEIARLQYELEVERKALSMAR---AWAEDEAKRAR 814 (966)
Q Consensus 753 ~~q~L~s~kvei~~Ek~~l~kL-----------~~~~e~~~q~i~~~k~~LE~EkkAL~maR---~WaEdEA~r~~ 814 (966)
.+..|+-.+..|..|+..+..+ ...++.+.+-+.++..+|+.+.+=|.-|+ +=++++-.+..
T Consensus 169 ~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 169 TLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3445556667777777666644 34445555555666666777666666665 33444444444
No 127
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=56.72 E-value=32 Score=40.57 Aligned_cols=64 Identities=23% Similarity=0.279 Sum_probs=34.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHhhcCcEEEEcCCccccccccchhhhcccccchH
Q 002103 781 ENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVD 860 (966)
Q Consensus 781 ~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w~~~~~~~~~~ 860 (966)
-.-+..++...||-|.|||+- +-|-. .+ -||.- .|+- -+-|++..++-++-++..+.+.|.
T Consensus 184 LRre~V~lentlEQEqEalvN-~LwKr-----md----kLe~e-kr~L--------q~KlDqpvs~p~~prdia~~~~~~ 244 (552)
T KOG2129|consen 184 LRREAVQLENTLEQEQEALVN-SLWKR-----MD----KLEQE-KRYL--------QKKLDQPVSTPSLPRDIAKIPDVH 244 (552)
T ss_pred HHHHHHHHhhHHHHHHHHHHH-HHHHH-----HH----HHHHH-HHHH--------HHHhcCcccCCCchhhhhcCcccc
Confidence 334556677777888887753 45531 11 11111 1110 112456667777777877777766
Q ss_pred HHH
Q 002103 861 QTV 863 (966)
Q Consensus 861 ~~~ 863 (966)
+--
T Consensus 245 gD~ 247 (552)
T KOG2129|consen 245 GDE 247 (552)
T ss_pred Cch
Confidence 533
No 128
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=56.58 E-value=87 Score=32.43 Aligned_cols=50 Identities=12% Similarity=0.338 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 002103 703 VVEKMAEEARQELERLRAE-REVDKIALMKERAAIESEMEILSKLRREVEEQL 754 (966)
Q Consensus 703 ~vEk~~eea~~eLe~~r~e-re~e~~~llKerAa~e~e~q~L~~Lr~EVde~~ 754 (966)
+.|+.+.+|+.|..+++.+ |++-.++...+|+++|.+-- .-|.+|+.+|.
T Consensus 66 ~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~--~~~~~~~~~~~ 116 (155)
T PRK06569 66 YYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLK--NSINQNIEDIN 116 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 4566677778888888887 88888888888888877543 33556666665
No 129
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=56.54 E-value=3.4e+02 Score=32.65 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002103 733 RAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELE 793 (966)
Q Consensus 733 rAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE 793 (966)
|+.||.=+--|.+-..+--|-+++++-+++-+-.|-.|+|.++..-=.+.+++++.-+|-|
T Consensus 259 ~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEse 319 (552)
T KOG2129|consen 259 QAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESE 319 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5666666666666666777777777777777777777777655544445566666554433
No 130
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.00 E-value=6.2e+02 Score=33.58 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 002103 736 IESEMEILSKLRREVEEQLESLMS 759 (966)
Q Consensus 736 ~e~e~q~L~~Lr~EVde~~q~L~s 759 (966)
|..-.+-+..|+..|++....+..
T Consensus 794 i~r~~~ei~~l~~qie~l~~~l~~ 817 (1311)
T TIGR00606 794 MERFQMELKDVERKIAQQAAKLQG 817 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455566666777666665553
No 131
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=55.20 E-value=66 Score=38.90 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=37.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHH
Q 002103 730 MKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENE 781 (966)
Q Consensus 730 lKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~ 781 (966)
+|-=+++..-++.|-.|+.|...+.+.+.+-+-++..+++.++....+++.-
T Consensus 208 ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~a 259 (555)
T TIGR03545 208 IKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKA 259 (555)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 3433455566677788888888888888888878888888777777777653
No 132
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=54.32 E-value=1.3e+02 Score=37.27 Aligned_cols=33 Identities=30% Similarity=0.423 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002103 764 ISYEKERINMLRKEAENENQEIARLQYELEVER 796 (966)
Q Consensus 764 i~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ek 796 (966)
|-.=..++.+|..+++++...+.+|+-.|+-=+
T Consensus 476 i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 476 IRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333356788888888888888888888776544
No 133
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=54.21 E-value=4.7e+02 Score=31.58 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhh--------hHHHHHHHHHHHH
Q 002103 677 ALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDK--IALMKER--------AAIESEMEILSKL 746 (966)
Q Consensus 677 ~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~--~~llKer--------Aa~e~e~q~L~~L 746 (966)
+-+..+...|...++ -|..|..-...|++........|...+..-..-. ...|+++ ..+..=.+-|..|
T Consensus 282 ~~~~~i~~~Id~Lyd-~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~L 360 (569)
T PRK04778 282 EKNEEIQERIDQLYD-ILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESL 360 (569)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHH
Confidence 344555667765554 5566665566666655555555555444222222 2223333 1122333457778
Q ss_pred HHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHH
Q 002103 747 RREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEI 785 (966)
Q Consensus 747 r~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i 785 (966)
..++++..+.+....+.|+.=++++++|.++++.=....
T Consensus 361 e~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq 399 (569)
T PRK04778 361 EKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQ 399 (569)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888877777777766654433333
No 134
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=54.19 E-value=2.4e+02 Score=28.23 Aligned_cols=80 Identities=30% Similarity=0.483 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002103 678 LVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESL 757 (966)
Q Consensus 678 l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L 757 (966)
++++.+.+.++...+- +++....++..++.+..+++..+. |..-.+.+-..+.-+....+++..+..+|.+.|..+
T Consensus 13 I~~eA~~e~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~r~~~l~~k~~~i~~v~~~~~~~L~~~ 88 (198)
T PF01991_consen 13 IIAEAQEEAEKILEEA---EEEAEKEIEEIIEKAEKEAEQEKE-REISKAELEARRELLEAKQEIIDEVFEEVKEKLKSF 88 (198)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444432 233333345555556666655554 233334444555677777888888888887777777
Q ss_pred hhcc
Q 002103 758 MSNK 761 (966)
Q Consensus 758 ~s~k 761 (966)
....
T Consensus 89 ~~~~ 92 (198)
T PF01991_consen 89 SKDP 92 (198)
T ss_dssp TCCC
T ss_pred hcCH
Confidence 6665
No 135
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=54.05 E-value=4.1e+02 Score=30.83 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHH
Q 002103 743 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAEN 780 (966)
Q Consensus 743 L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~ 780 (966)
|..|+.++.++..+...+--.|..=+..|+.|+..+..
T Consensus 256 l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 256 IEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEE 293 (498)
T ss_pred HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHh
Confidence 55566666666655555555555555555555555433
No 136
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=53.66 E-value=1.4e+02 Score=36.33 Aligned_cols=61 Identities=23% Similarity=0.373 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002103 740 MEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 800 (966)
Q Consensus 740 ~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ 800 (966)
++-+..++.-|++.-+.=...=..+..=++.+++|.++++.+.+.+..++.+|+.+++.+.
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~ 250 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLK 250 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4445555555554444211111223344556677777777777777777777776666553
No 137
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.57 E-value=1.3e+02 Score=32.67 Aligned_cols=45 Identities=29% Similarity=0.302 Sum_probs=29.6
Q ss_pred hhHHHHHHHHH-------HHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 002103 653 DAVNEELQRIE-------AESAAENAVSEHSALVAEVEKEINESFEKELSMEREKID 702 (966)
Q Consensus 653 e~v~eEL~RlE-------AE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~ 702 (966)
+.+.+|+.|.+ .|.++++-.++|.+|++ +|+-|-.++-.+|....
T Consensus 80 ~~fr~Ev~r~~e~~~g~~ie~~~e~eaaE~~el~a-----~N~a~N~~~~~~R~~Rl 131 (227)
T KOG4691|consen 80 MEFRSEVQRVHEARAGVLIERKAEKEAAEHRELMA-----WNQAENRRLHELRIARL 131 (227)
T ss_pred HHHHHHHHHHHhhcchhHHHhhhhhHHHHHHHHHH-----HhHHHHHHHHHHHHHHH
Confidence 35677777755 45566666666777775 57888877777765443
No 138
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=53.46 E-value=5.5e+02 Score=32.19 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=45.1
Q ss_pred HHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002103 751 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEG 822 (966)
Q Consensus 751 de~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEe 822 (966)
+..-+.|...+-+...-++.+.++..+++...+.+-.++..|+.+.+-|.--. +++..|.+-|.+++|-
T Consensus 244 ~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~---~e~~~r~kL~N~i~eL 312 (670)
T KOG0239|consen 244 QALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK---KEKEERRKLHNEILEL 312 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 33333444444445555667777777777777777777888887777665444 4445566788888886
No 139
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=53.34 E-value=1.2e+02 Score=36.03 Aligned_cols=59 Identities=27% Similarity=0.300 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHhhHHh
Q 002103 770 RINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKR--AREQAKALEGARDRWE 828 (966)
Q Consensus 770 ~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r--~~e~A~vLEea~~rW~ 828 (966)
++-.|+.+.-..+++-.+-+-+-.++||++.-.|.=++.|+++ .+||++..++++.|-+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (429)
T PRK00247 321 RAPELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRA 381 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5666677776777777777777889999999999999999988 7778888888777653
No 140
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=53.07 E-value=1.8e+02 Score=26.45 Aligned_cols=79 Identities=11% Similarity=0.159 Sum_probs=55.4
Q ss_pred HHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHH
Q 002103 860 DQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEF 938 (966)
Q Consensus 860 ~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (966)
...+...++.+..|..+...+......+-..|-..+..|+..|.++-..+..+..+...............+.......
T Consensus 13 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l 91 (127)
T smart00502 13 RKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKL 91 (127)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556777788888888888888888888888888888888888888777776666554544444444444444333
No 141
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=52.88 E-value=3.4e+02 Score=31.60 Aligned_cols=50 Identities=32% Similarity=0.442 Sum_probs=40.6
Q ss_pred HHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHH
Q 002103 752 EQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAED 808 (966)
Q Consensus 752 e~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEd 808 (966)
+|++.|++-++ +.-=++.++||+++++..++++..++..+.. |.--|.+|
T Consensus 375 ~q~~yLL~m~L-~~LT~~e~~kL~~e~~~l~~ei~~l~~~~~~------~~~l~~~d 424 (426)
T PF00521_consen 375 EQADYLLSMPL-RRLTKEEIEKLQKEIKELEKEIEELEKILPK------IKDLWKKD 424 (426)
T ss_dssp HHHHHHHTSBG-GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHC------HHHHHHHH
T ss_pred HHHHHHHhchH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 88999998888 4444688899999999999999999998877 55566654
No 142
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=52.84 E-value=1e+02 Score=40.00 Aligned_cols=77 Identities=29% Similarity=0.384 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHhhh-cceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHH---HHHHHHHH
Q 002103 742 ILSKLRREVEEQLESLMS-NKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDE---AKRAREQA 817 (966)
Q Consensus 742 ~L~~Lr~EVde~~q~L~s-~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdE---A~r~~e~A 817 (966)
+...||+|||.....|.. ++.+.-.=+++++++.+-++. |--+|-|.= -.-++||.
T Consensus 365 virElReEve~lr~qL~~ae~~~~~el~e~l~esekli~e--------------------i~~twEEkl~ktE~in~erq 424 (1714)
T KOG0241|consen 365 VIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKE--------------------ITVTWEEKLRKTEEINQERQ 424 (1714)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHH--------------------HHhHHHHHHHHHHHHHHHHH
Confidence 455689999999988887 555555555555555444332 122332211 12357888
Q ss_pred HHHHHHhhHHhhcCcEEEEcC
Q 002103 818 KALEGARDRWERQGIKVVVDK 838 (966)
Q Consensus 818 ~vLEea~~rW~~~gikv~vd~ 838 (966)
+-||.++...+--||||-=|+
T Consensus 425 ~~L~~~gis~~~sgikv~dDK 445 (1714)
T KOG0241|consen 425 AQLESMGISLENSGIKVGDDK 445 (1714)
T ss_pred HHHHHHHHHHhcccccccccc
Confidence 899999999999999986554
No 143
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=52.69 E-value=6.1e+02 Score=32.45 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=14.3
Q ss_pred hHHHHHhHHHHHHHHHHhhhhcc
Q 002103 859 VDQTVSRAQSLVDKLKAMANDVS 881 (966)
Q Consensus 859 ~~~~~~ra~~l~~klk~m~~~~~ 881 (966)
+.......+-|+.+|..|-...+
T Consensus 253 ~~~~~~~~~~l~~~l~~~eeEnk 275 (769)
T PF05911_consen 253 PQKRSKESEFLTERLQAMEEENK 275 (769)
T ss_pred cccchhhhHHHHHHHHHHHHHHH
Confidence 34445566777777777765543
No 144
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=52.58 E-value=86 Score=32.33 Aligned_cols=102 Identities=20% Similarity=0.234 Sum_probs=71.5
Q ss_pred HHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHh
Q 002103 860 DQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFR 939 (966)
Q Consensus 860 ~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (966)
+..++..+++.++|+.=..+-+++..+++..+..+|.+--..||..--++-+++.++++.--+-+-..+++.|-.+.+++
T Consensus 37 d~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~ 116 (155)
T PF07464_consen 37 DSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVS 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455666666666666679999999999999999999999988999999999998877777888888888888887
Q ss_pred hhhcc-------cchhhhhhhhhhHHhhh
Q 002103 940 SNLTE-------GAKRVAGDCREGVEKLT 961 (966)
Q Consensus 940 ~~~~~-------~~kr~~~~c~~gv~k~~ 961 (966)
..+.. ..|.+.|+.-..+.++.
T Consensus 117 ~~~~~~~e~l~~~~K~~~D~~~k~~~~~~ 145 (155)
T PF07464_consen 117 ENSEGANEKLQPAIKQAYDDAVKAAQKVQ 145 (155)
T ss_dssp S---SS-GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 76443 33444444444444443
No 145
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=52.26 E-value=3.4e+02 Score=29.43 Aligned_cols=70 Identities=29% Similarity=0.353 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 002103 684 KEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQ 753 (966)
Q Consensus 684 ~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~ 753 (966)
+++...|+.+|..=|..+..+-+--..+..++.+++.+-+.-+..+-++.+....=...|..||.++|+-
T Consensus 46 ~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~ 115 (312)
T PF00038_consen 46 SRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEE 115 (312)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 4577788888877777777766666666666666666666555555444444444444556666666643
No 146
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=51.71 E-value=2.5e+02 Score=27.64 Aligned_cols=81 Identities=21% Similarity=0.264 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHH
Q 002103 707 MAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIA 786 (966)
Q Consensus 707 ~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~ 786 (966)
.+.+|....+++=.-+-.....|-+=|+.+..-...+..|+.+++..-..|...+.....++..|++=..+++.+.+.+.
T Consensus 39 ~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 39 IAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444555555566666667777777777777777777777777777777777777777766665
Q ss_pred H
Q 002103 787 R 787 (966)
Q Consensus 787 ~ 787 (966)
.
T Consensus 119 ~ 119 (132)
T PF07926_consen 119 E 119 (132)
T ss_pred H
Confidence 4
No 147
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=51.66 E-value=4.9e+02 Score=31.06 Aligned_cols=33 Identities=12% Similarity=0.323 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhhhcccchHH------HHHHHHHHHHHHH
Q 002103 867 QSLVDKLKAMANDVSGKSKE------IINTIIHKILLFI 899 (966)
Q Consensus 867 ~~l~~klk~m~~~~~~~~~~------~~~~~~~~i~~~i 899 (966)
..|.++...++..++..++- ++..++.++.+++
T Consensus 469 ~~L~~rf~~v~~~~r~~~l~~~~~~g~~~~~~s~~~S~l 507 (582)
T PF09731_consen 469 AQLRNRFERVAPEVRRASLVPPEGAGLLGHLLSYLFSLL 507 (582)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhee
Confidence 34566666666665533332 4444554444444
No 148
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=51.25 E-value=5.2e+02 Score=31.28 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHH
Q 002103 769 ERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEA 810 (966)
Q Consensus 769 ~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA 810 (966)
+.|++.++.++.-+..=.+-...|..|.+-|.-+-.=+-.||
T Consensus 147 e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea 188 (475)
T PRK10361 147 EQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEA 188 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444444555666666666655444444444
No 149
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=50.54 E-value=3.7e+02 Score=29.39 Aligned_cols=88 Identities=23% Similarity=0.301 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002103 721 EREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 800 (966)
Q Consensus 721 ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ 800 (966)
+=++-+..++++=..++.|-..|..++.|.+..++ |+.+..+-+.++..+...|..+-..++.|++.
T Consensus 12 ~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~-----------Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~-- 78 (230)
T PF10146_consen 12 ELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQ-----------ERMAHVEELRQINQDINTLENIIKQAESERNK-- 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 45566678888888888888888888888877654 44444444455555554444444444444443
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhH
Q 002103 801 MARAWAEDEAKRAREQAKALEGARDR 826 (966)
Q Consensus 801 maR~WaEdEA~r~~e~A~vLEea~~r 826 (966)
.++.+.+.++.-.-|..-.++
T Consensus 79 -----~~~~i~r~~eey~~Lk~~in~ 99 (230)
T PF10146_consen 79 -----RQEKIQRLYEEYKPLKDEINE 99 (230)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHH
Confidence 344455554444444333333
No 150
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=50.51 E-value=2.5e+02 Score=30.49 Aligned_cols=96 Identities=23% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002103 724 VDKIALMKERAAIESE-MEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMA 802 (966)
Q Consensus 724 ~e~~~llKerAa~e~e-~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ma 802 (966)
+++..++||||.||.+ -.-|.+|-..... ..++-.=+.-++.++.+++..-..=..+...|..|-+-|.-.
T Consensus 22 ~el~~f~keRa~iE~~Yak~L~kl~kk~~~--------~~e~gTl~~a~~~~~~e~e~~a~~H~~ia~~L~~~~~~l~~f 93 (242)
T cd07671 22 KDVEELLKQRAQAEERYGKELVQIARKAGG--------QTEINTLKASFDQLKQQIENIGNSHIQLAGMLREELKSLEEF 93 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccC--------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhHHhhc
Q 002103 803 RAWAEDEAKRAREQAKALEGARDRWERQ 830 (966)
Q Consensus 803 R~WaEdEA~r~~e~A~vLEea~~rW~~~ 830 (966)
+.|-.++-|+.. -..+.+...|..+
T Consensus 94 ~~~qke~rK~~e---~~~eK~qk~~~~~ 118 (242)
T cd07671 94 RERQKEQRKKYE---AVMERVQKSKVSL 118 (242)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHH
No 151
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=49.69 E-value=3.8e+02 Score=29.27 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=7.8
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 002103 783 QEIARLQYELEVERKALS 800 (966)
Q Consensus 783 q~i~~~k~~LE~EkkAL~ 800 (966)
.++..++..+.....+|.
T Consensus 196 ~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 196 AELDTLQAQIDAAIAALD 213 (301)
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 444444444444444443
No 152
>PF07780 Spb1_C: Spb1 C-terminal domain; InterPro: IPR012920 This presumed domain is found at the C terminus of a family of FtsJ-like methyltransferases. Members of this family are involved in 60S ribosomal biogenesis, for example P25582 from SWISSPROT []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005634 nucleus
Probab=49.63 E-value=1e+02 Score=33.58 Aligned_cols=94 Identities=24% Similarity=0.250 Sum_probs=55.1
Q ss_pred hccccccccCCCCcccHHHHHHHHhcccccceecccCCCCccCCCCCCcHHHHHHHHHhccchhhHHHHHHHH-------
Q 002103 590 YQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRI------- 662 (966)
Q Consensus 590 ~~~~gF~D~dkI~~~A~~AV~aDL~aGDqgIIr~vFG~T~~FQPnKPVTRAEAAAaL~~G~~~e~v~eEL~Rl------- 662 (966)
+....|.|.+.+|.|+..-= ...++|+.|||+.+++++= +-|.-|
T Consensus 64 yNRyaf~D~d~LP~WF~eDE------------------~kH~k~~~Pvtke~v~~~k----------~k~~einaRPIKK 115 (215)
T PF07780_consen 64 YNRYAFNDDDGLPDWFVEDE------------------KKHNKPQLPVTKEEVAEYK----------EKLREINARPIKK 115 (215)
T ss_pred ccccccCCCCCCchhHHHHH------------------HhhcCCCCCCCHHHHHHHH----------HHHHHHcCCchHH
Confidence 55678999999999987652 1358899999999887642 222111
Q ss_pred HHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 002103 663 EAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEAR 712 (966)
Q Consensus 663 EAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~ 712 (966)
-+|.-||.---+. .-++++++=....-+..=-.||++...++++|--|.
T Consensus 116 V~EAkaRKK~Ra~-kklek~kkKa~~I~~~~d~se~eK~~~i~kl~kka~ 164 (215)
T PF07780_consen 116 VAEAKARKKRRAA-KKLEKAKKKAEAIADDEDMSEREKAKQIKKLYKKAK 164 (215)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhhcCcCCChHHHHHHHHHHHHHhh
Confidence 2444444432221 123333333333333333347888888888885543
No 153
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=49.51 E-value=2.2e+02 Score=31.24 Aligned_cols=15 Identities=13% Similarity=-0.042 Sum_probs=6.7
Q ss_pred ccHHHHHHHHHHhhc
Q 002103 479 CIRREYARWLVSASS 493 (966)
Q Consensus 479 ITRaEFARWLVrA~n 493 (966)
+...|-.+++-+|..
T Consensus 36 ~~e~e~~~A~~~A~~ 50 (297)
T PF02841_consen 36 VAEAENRAAVEKAVE 50 (297)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 154
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=49.46 E-value=5.4e+02 Score=30.91 Aligned_cols=158 Identities=27% Similarity=0.359 Sum_probs=78.8
Q ss_pred CCcHHHHHHHHH--hccchhhHHHHHHHHHHHHHhhHH-----HHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002103 636 PVTNAQAAVALA--IGEASDAVNEELQRIEAESAAENA-----VSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMA 708 (966)
Q Consensus 636 PVTRAEAAAaL~--~G~~~e~v~eEL~RlEAE~~a~~a-----v~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~ 708 (966)
.+++++-|+... .+..-+.+..||.++-.+-..-.+ .-....++.+...|+ ..|..+|..=+++...+.+.+
T Consensus 156 A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~-~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 156 ALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDA-EEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 345666655554 666677788888877654332211 111233333334444 367666544444444443333
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHH
Q 002103 709 ----------EEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEA 778 (966)
Q Consensus 709 ----------eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~ 778 (966)
..+..++..|+.+-..-...-+.+ .. ..+.....+...|.+-+.+.-.=+.+|++...++
T Consensus 235 ~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~--------~~--~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~ 304 (522)
T PF05701_consen 235 EAAKDLESKLAEASAELESLQAELEAAKESKLEE--------EA--EAKEKSSELQSSLASAKKELEEAKKELEKAKEEA 304 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hH--HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222211111111111 00 2233333344445555555555566677777777
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002103 779 ENENQEIARLQYELEVERKALSMARA 804 (966)
Q Consensus 779 e~~~q~i~~~k~~LE~EkkAL~maR~ 804 (966)
..=+..+.-|+.+|+-+|..|.-+|-
T Consensus 305 ~~L~~~vesL~~ELe~~K~el~~lke 330 (522)
T PF05701_consen 305 SSLRASVESLRSELEKEKEELERLKE 330 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777776664
No 155
>PF15642 Tox-ODYAM1: Toxin in Odyssella and Amoebophilus
Probab=49.10 E-value=99 Score=35.09 Aligned_cols=77 Identities=22% Similarity=0.467 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002103 677 ALVAEVEKEINESFEKE-LSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLE 755 (966)
Q Consensus 677 ~l~~~~~~di~~~f~~e-l~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q 755 (966)
--+-.++.+||+-+-.| |+--|-| +|++++|.+.++--.-..+++ .|-++|-.|-+|.++..++|-|+-.+++
T Consensus 89 NSL~~lQq~vn~aY~sEv~kL~~~~---~ERn~~Er~~~iTt~~qq~ee---~Le~k~~~is~qL~~~~~~r~EL~~~~~ 162 (385)
T PF15642_consen 89 NSLTELQQKVNGAYGSEVIKLDRGR---SERNHEERRKKITTSHQQHEE---ALEKKKEDISRQLQVIPKHRVELKQKQD 162 (385)
T ss_pred chHHHHHHHHHhhhhHHHHHHHHhH---HHhhHHHHHhhhhhHHHHHHH---HHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 34455688999998877 5554443 688888888887766665555 4567888889999988888888877777
Q ss_pred Hhhh
Q 002103 756 SLMS 759 (966)
Q Consensus 756 ~L~s 759 (966)
-|+.
T Consensus 163 ~l~~ 166 (385)
T PF15642_consen 163 DLTK 166 (385)
T ss_pred HHHH
Confidence 6654
No 156
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=49.08 E-value=7.8e+02 Score=32.64 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=17.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 002103 883 KSKEIINTIIHKILLFISNLKKWA 906 (966)
Q Consensus 883 ~~~~~~~~~~~~i~~~i~~l~~~~ 906 (966)
+.+++++.+|+..+.++..|+.-+
T Consensus 625 ~~r~~~~~~~e~~q~~~~~~k~~~ 648 (1041)
T KOG0243|consen 625 KDRDILSEVLESLQQLQEVLKKDS 648 (1041)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhH
Confidence 567778888888777777776543
No 157
>PF14992 TMCO5: TMCO5 family
Probab=48.79 E-value=2.8e+02 Score=31.44 Aligned_cols=92 Identities=22% Similarity=0.297 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHH----HHHHHHHHHHHHHhhhcce----ehhhHHHHHHHHHHHHHHHHHHHH
Q 002103 715 LERLRAEREVDKIALMKERAAIESEMEIL----SKLRREVEEQLESLMSNKV----EISYEKERINMLRKEAENENQEIA 786 (966)
Q Consensus 715 Le~~r~ere~e~~~llKerAa~e~e~q~L----~~Lr~EVde~~q~L~s~kv----ei~~Ek~~l~kL~~~~e~~~q~i~ 786 (966)
+...-.+++.++-.|-.+.|-+|.+++.| ..|.++++++...+-.++- ..-.=+.++|+++..+......+.
T Consensus 54 e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~ 133 (280)
T PF14992_consen 54 EDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIA 133 (280)
T ss_pred HhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHH
Confidence 33344467777777778889999999999 8999999999888644432 122224788888888888888887
Q ss_pred HHhHHHHHHHHHHHHHHHhH
Q 002103 787 RLQYELEVERKALSMARAWA 806 (966)
Q Consensus 787 ~~k~~LE~EkkAL~maR~Wa 806 (966)
.+.....--.....=+..|+
T Consensus 134 kve~d~~~v~~l~eDq~~~i 153 (280)
T PF14992_consen 134 KVEDDYQQVHQLCEDQANEI 153 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77654433333333333333
No 158
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=48.27 E-value=5e+02 Score=33.26 Aligned_cols=56 Identities=16% Similarity=0.275 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002103 745 KLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 800 (966)
Q Consensus 745 ~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ 800 (966)
+|-.-|||+||--.-++..-..++++|..-...+....+++..-|--|--.++.|+
T Consensus 195 rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr 250 (916)
T KOG0249|consen 195 RLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLR 250 (916)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 45566677766555555555555555544444444444444444444444444443
No 159
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=47.93 E-value=5.8e+02 Score=31.64 Aligned_cols=71 Identities=28% Similarity=0.274 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHh
Q 002103 734 AAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAE---NENQEIARLQYELEVERKALSMARAW 805 (966)
Q Consensus 734 Aa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e---~~~q~i~~~k~~LE~EkkAL~maR~W 805 (966)
+-+|-|+++|-.|..|.+-+ ++..-.+-.|..=+++.++-+.+.+ .++|+..|-|-.+|.|++-.-.+|.-
T Consensus 183 r~~e~Q~qv~qsl~~el~~i-~~~~q~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~ 256 (591)
T KOG2412|consen 183 RLLEEQNQVLQSLDTELQAI-QREKQRKEQIRERKERSEEKREEAERKRRAHQEELRQKEDEEAELQEQEKIRAE 256 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33666677776666544322 1111112222222222333333333 34667777777777777767677753
No 160
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=47.61 E-value=2.7e+02 Score=27.08 Aligned_cols=40 Identities=33% Similarity=0.495 Sum_probs=29.4
Q ss_pred HHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002103 752 EQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELE 793 (966)
Q Consensus 752 e~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE 793 (966)
-|++|++-+|.. |+.+-|+.|..-+-.+..++..|..+||
T Consensus 55 ~Qy~Rm~EEk~~--yD~e~ie~L~~~l~~rE~e~~~Le~ele 94 (94)
T PF04576_consen 55 RQYQRMAEEKAE--YDQEAIESLKDILYKREKEIQSLEAELE 94 (94)
T ss_pred HHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 478888888865 5667788888777777777777666653
No 161
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=47.23 E-value=4.1e+02 Score=28.96 Aligned_cols=74 Identities=41% Similarity=0.453 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHH
Q 002103 708 AEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIAR 787 (966)
Q Consensus 708 ~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~ 787 (966)
+++....|+..+.+-+.++..|-.+...-+.+++.|..=..|.. ..+..|..+.+.+..+..+
T Consensus 45 aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~-----------------~~i~~l~ee~~~ke~Ea~~ 107 (246)
T PF00769_consen 45 AEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAE-----------------AEIARLEEESERKEEEAEE 107 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555544444444444333222222 2345556666666667777
Q ss_pred HhHHHHHHHHH
Q 002103 788 LQYELEVERKA 798 (966)
Q Consensus 788 ~k~~LE~EkkA 798 (966)
++.+|+.=+++
T Consensus 108 lq~el~~ar~~ 118 (246)
T PF00769_consen 108 LQEELEEARED 118 (246)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77666544333
No 162
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=46.80 E-value=3.3e+02 Score=32.60 Aligned_cols=88 Identities=23% Similarity=0.197 Sum_probs=38.5
Q ss_pred chhhHHHHHHHHHHHHHhhHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002103 651 ASDAVNEELQRIEAESAAENAVSEH-SALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIAL 729 (966)
Q Consensus 651 ~~e~v~eEL~RlEAE~~a~~av~~~-~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~l 729 (966)
..+.+++++.-++||.-|-.|-... ...+.++++|.. .+.+||-+.++-+++.-.=..-++++|..-..+.-++
T Consensus 28 ~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~-----~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~ 102 (459)
T KOG0288|consen 28 AQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENT-----QLNEERVREEATEKTLTVDVLIAENLRIRSLNEIREL 102 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444444332 222333333332 2333555555555555444444444444444444444
Q ss_pred hhhhhHHHHHHHHH
Q 002103 730 MKERAAIESEMEIL 743 (966)
Q Consensus 730 lKerAa~e~e~q~L 743 (966)
-+.+|..+.-+-.|
T Consensus 103 ~~q~~e~~n~~~~l 116 (459)
T KOG0288|consen 103 REQKAEFENAELAL 116 (459)
T ss_pred HHhhhhhccchhhH
Confidence 44444444333333
No 163
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=46.25 E-value=2.6e+02 Score=26.36 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhh
Q 002103 656 NEELQRIEAESAAENAVSEH--SALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRA--EREVDKIALMK 731 (966)
Q Consensus 656 ~eEL~RlEAE~~a~~av~~~--~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~--ere~e~~~llK 731 (966)
..||-++++++-.....+-. .++.. ..+-.....-|+..+..+.++++|.......|+.+|+. .+..+...-|+
T Consensus 2 ~~EL~~~~~a~~~~~~~~~~k~~~~~~--lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~ 79 (96)
T PF08647_consen 2 QTELVSMEQAFKELSEQADKKVKELTI--LEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLK 79 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45777777665333222211 11111 11222345555666667777777777777777777766 34444445555
Q ss_pred h
Q 002103 732 E 732 (966)
Q Consensus 732 e 732 (966)
+
T Consensus 80 ~ 80 (96)
T PF08647_consen 80 E 80 (96)
T ss_pred H
Confidence 4
No 164
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=45.81 E-value=1.2e+02 Score=35.62 Aligned_cols=39 Identities=13% Similarity=-0.041 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHH
Q 002103 771 INMLRKEAENENQEIARLQYELEVERKALSMARAWAEDE 809 (966)
Q Consensus 771 l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdE 809 (966)
+.++..-+..+..++.....+|+.+.+.|.--...+++|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555555444444443
No 165
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=45.64 E-value=7.5e+02 Score=31.47 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcceehhhHHHHHHH
Q 002103 741 EILSKLRREVEEQLESLMSNKVEISYEKERINM 773 (966)
Q Consensus 741 q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~k 773 (966)
..+..+-.++....++|....-++..++..++.
T Consensus 277 ~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~ 309 (908)
T COG0419 277 RELERLLEELEEKIERLEELEREIEELEEELEG 309 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 166
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=45.44 E-value=3.6e+02 Score=27.69 Aligned_cols=95 Identities=23% Similarity=0.259 Sum_probs=40.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHH
Q 002103 693 ELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERIN 772 (966)
Q Consensus 693 el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~ 772 (966)
+|++=+.+..-++..++.+..||+...+.++.-....-.-|+.+++=.+-|.-+..+ +.+|-.+=+.+.-|++.|.
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~e----l~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSE----LNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555555555554444333333344433322222222222 1222223333445555555
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 002103 773 MLRKEAENENQEIARLQYE 791 (966)
Q Consensus 773 kL~~~~e~~~q~i~~~k~~ 791 (966)
+.+.+.+.+-.++.-..+.
T Consensus 87 k~lq~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 87 KELQKKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 5555444444444444433
No 167
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.42 E-value=7.1e+02 Score=31.15 Aligned_cols=78 Identities=27% Similarity=0.307 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHHHHHHHHH---HHHhhhcceehhhHHHHHH
Q 002103 699 EKIDVVEKMAEEARQELERLRAEREV---DKIALMKERAAIESEMEILSKLRREVEEQ---LESLMSNKVEISYEKERIN 772 (966)
Q Consensus 699 ~~~~~vEk~~eea~~eLe~~r~ere~---e~~~llKerAa~e~e~q~L~~Lr~EVde~---~q~L~s~kvei~~Ek~~l~ 772 (966)
.+|.++|.-+-..++||++.+.|+|. ....+..-.+++|.|+- +||.|+.|- =+||.++-.|.-.|-=-||
T Consensus 107 ~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~---rlr~elKe~KfRE~RllseYSELEEENIsLQ 183 (772)
T KOG0999|consen 107 QKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRR---RLRDELKEYKFREARLLSEYSELEEENISLQ 183 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 57888888888889999988887764 33456666788888874 566666553 4677777666655555566
Q ss_pred HHHHHHH
Q 002103 773 MLRKEAE 779 (966)
Q Consensus 773 kL~~~~e 779 (966)
|+-+-+-
T Consensus 184 KqVs~LR 190 (772)
T KOG0999|consen 184 KQVSNLR 190 (772)
T ss_pred HHHHHHh
Confidence 6654443
No 168
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=45.13 E-value=3.9e+02 Score=34.04 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002103 768 KERINMLRKEAENENQEIAR 787 (966)
Q Consensus 768 k~~l~kL~~~~e~~~q~i~~ 787 (966)
+++|++|..++..+.+.+.+
T Consensus 648 k~KIe~L~~eIkkkIe~av~ 667 (762)
T PLN03229 648 QEKIESLNEEINKKIERVIR 667 (762)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 66667777666666666554
No 169
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=45.06 E-value=7.1 Score=40.20 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=10.3
Q ss_pred hcCCCCccccchhhHHH
Q 002103 90 KKGGLGGIVQAGVAGVV 106 (966)
Q Consensus 90 ~k~~~~g~v~~gvagv~ 106 (966)
|+--+|-+||.|||=+|
T Consensus 48 knIVIGvVVGVGg~ill 64 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPILL 64 (154)
T ss_pred ccEEEEEEecccHHHHH
Confidence 34456777887775443
No 170
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=44.67 E-value=3.2e+02 Score=28.74 Aligned_cols=48 Identities=27% Similarity=0.415 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHh
Q 002103 774 LRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWE 828 (966)
Q Consensus 774 L~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~rW~ 828 (966)
|+.+++.-.+++.+++.+|+ -.+.|=-+.-.+.++....+-+|-.||.
T Consensus 108 ~l~~l~~l~~~~~~l~~el~-------~~~~~Dp~~i~~~~~~~~~~~~~anrwT 155 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELE-------KYSENDPEKIEKLKEEIKIAKEAANRWT 155 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555554 3344555555666667777778888886
No 171
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=44.20 E-value=2.3e+02 Score=33.07 Aligned_cols=87 Identities=21% Similarity=0.291 Sum_probs=54.8
Q ss_pred HHHHHHHHHh-------hhcceehhhHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002103 748 REVEEQLESL-------MSNKVEISYEKERINMLRKEAENEN----QEIARLQYELEVERKALSMARAWAEDEAKRAREQ 816 (966)
Q Consensus 748 ~EVde~~q~L-------~s~kvei~~Ek~~l~kL~~~~e~~~----q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~ 816 (966)
.||+|-|+.. -.+|...+|+-+.|...+.+.+... -+-.++-+++|++|-+.++|-.=.+.=-.--+.|
T Consensus 122 ~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QR 201 (405)
T KOG2010|consen 122 SEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQR 201 (405)
T ss_pred HHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666553 3677777887766666655555433 3345677899999999999975444322223344
Q ss_pred HHHHHHHhhHHhhcCcEEEEcCCcc
Q 002103 817 AKALEGARDRWERQGIKVVVDKDLR 841 (966)
Q Consensus 817 A~vLEea~~rW~~~gikv~vd~~~~ 841 (966)
-..||+ +|..++-++--+
T Consensus 202 deliee-------~Gl~~I~~~t~~ 219 (405)
T KOG2010|consen 202 DELIEE-------HGLVIIPDGTPN 219 (405)
T ss_pred HHHHHH-------cCeEeccCCCCC
Confidence 556665 888777665433
No 172
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=43.32 E-value=9.5e+02 Score=31.99 Aligned_cols=180 Identities=18% Similarity=0.231 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHHHhhHHHHhhHHHHHHH-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002103 650 EASDAVNEELQRIEAESAAENAVSEHSALVAEV-----EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREV 724 (966)
Q Consensus 650 ~~~e~v~eEL~RlEAE~~a~~av~~~~~l~~~~-----~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~ 724 (966)
+..+.+.+=|..|.++-.=-....-+.+|.++- -++-.....+++..+..++.++..-+-+....+.+++.+-+.
T Consensus 255 ~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~ 334 (1074)
T KOG0250|consen 255 EQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDA 334 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHH
Q 002103 725 DKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEA----ENENQEIARLQYELEVERKALS 800 (966)
Q Consensus 725 e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~----e~~~q~i~~~k~~LE~EkkAL~ 800 (966)
-..++.--|++++.-+-....++++.-+.....--.|..|.+=+..|.++.++. ..+..++.+.-..|+.|.+.|.
T Consensus 335 ~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e 414 (1074)
T KOG0250|consen 335 QDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLE 414 (1074)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhHHhh
Q 002103 801 MARAWAEDEAKRAREQAKALEGARDRWER 829 (966)
Q Consensus 801 maR~WaEdEA~r~~e~A~vLEea~~rW~~ 829 (966)
-...=+.+|-...++-++.-++....=++
T Consensus 415 ~~~~~L~~e~~~~~~~~~~~~ee~~~i~~ 443 (1074)
T KOG0250|consen 415 EQINSLREELNEVKEKAKEEEEEKEHIEG 443 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
No 173
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=42.52 E-value=1.2e+02 Score=30.21 Aligned_cols=98 Identities=17% Similarity=0.217 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHhhcCcEEEEcCCccccccccchhh
Q 002103 772 NMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWV 851 (966)
Q Consensus 772 ~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w~ 851 (966)
..-..++-.-+.++.++...+..|..+ ++.|.+.+++.-+.+-+.|+..-..|-.....--..+-.-+-...-+.|+
T Consensus 6 ~~al~ki~~l~~~~~~i~~~~~~~I~~---i~~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~e~~k~Ks~~l~~G~v~~R 82 (149)
T PF07352_consen 6 DWALRKIAELQREIARIEAEANDEIAR---IKEWYEAEIAPLQNRIEYLEGLLQAYAEANRDELTKKKSLKLPFGTVGFR 82 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCHHHHHHHHHHHHHHHHHHHCTHHHH-----EE-SS-EE---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHhcccceEEEcCCeeEEEE
Confidence 344455555566666666777666555 46899999999999999999999999865432211333344456778898
Q ss_pred hcccccchHHHHHhHHHHHHHHHHh
Q 002103 852 NAGKQFSVDQTVSRAQSLVDKLKAM 876 (966)
Q Consensus 852 ~~~~~~~~~~~~~ra~~l~~klk~m 876 (966)
.......+. -.+.|++.||.+
T Consensus 83 ~~~~~~~~~----~~~~vl~~Lk~~ 103 (149)
T PF07352_consen 83 KSTPKVKVR----DEEKVLEWLKEN 103 (149)
T ss_dssp --------T-----HHHHHHHHHHC
T ss_pred ecCCcccCC----CHHHHHHHHHHc
Confidence 777666541 456788888776
No 174
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=42.36 E-value=1e+03 Score=32.18 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002103 713 QELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLM 758 (966)
Q Consensus 713 ~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~ 758 (966)
..|+++-.+-++++..+.|..+.+--.++-+..||.+++++.+.+-
T Consensus 511 ~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~ 556 (1317)
T KOG0612|consen 511 RKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMR 556 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhh
Confidence 3444444456667777788888888888899999999998877665
No 175
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=42.14 E-value=4.8e+02 Score=28.28 Aligned_cols=41 Identities=24% Similarity=0.304 Sum_probs=21.7
Q ss_pred HHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002103 660 QRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKI 701 (966)
Q Consensus 660 ~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~ 701 (966)
-+.|+|++|..=..--..|...+++.|+ -|-++...++..+
T Consensus 65 ~~~e~E~~a~~H~~la~~L~~ev~~~l~-~f~~~~~k~~k~~ 105 (233)
T cd07649 65 VKKSLADEAEVHLKFSSKLQSEVEKPLL-NFRENFKKDMKKL 105 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3456777765533333334444455564 6666655554443
No 176
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=41.71 E-value=89 Score=35.41 Aligned_cols=62 Identities=29% Similarity=0.432 Sum_probs=0.0
Q ss_pred hhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 002103 757 LMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARD 825 (966)
Q Consensus 757 L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~ 825 (966)
|--..|-|-.=|-+|-+-...++...-+|.+||+.|- +|=-.|+|+|.-|+.++- +|.|||.
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~------RMrEDWIEEECHRVEAQL-ALKEARk 124 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLA------RMREDWIEEECHRVEAQL-ALKEARK 124 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH-HHHHHHH
No 177
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=40.31 E-value=1e+03 Score=31.62 Aligned_cols=128 Identities=19% Similarity=0.216 Sum_probs=59.3
Q ss_pred HHHHHHHHhhHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 002103 660 QRIEAESAAENAVSEHSALVAEV---EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAI 736 (966)
Q Consensus 660 ~RlEAE~~a~~av~~~~~l~~~~---~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~ 736 (966)
.|||+-.--..+...+.+|.+.+ |.+|+ .++.++..=+....-+|........+.+.++.+-..-+.....=.-++
T Consensus 665 srLe~~k~~~~~~~~~~~l~~~L~~~r~~i~-~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~ 743 (1200)
T KOG0964|consen 665 SRLELLKNVNESRSELKELQESLDEVRNEIE-DIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESL 743 (1200)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 45555555555555555554433 55553 344444333333344444444444444444444333333222223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccee---hh------hHHHHHHHHHHHHHHHHHHHHHH
Q 002103 737 ESEMEILSKLRREVEEQLESLMSNKVE---IS------YEKERINMLRKEAENENQEIARL 788 (966)
Q Consensus 737 e~e~q~L~~Lr~EVde~~q~L~s~kve---i~------~Ek~~l~kL~~~~e~~~q~i~~~ 788 (966)
+.-...|..++-..+.+.+..-+.+.+ .+ .|++++.+|..++..=++.+-.+
T Consensus 744 ~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~ 804 (1200)
T KOG0964|consen 744 EPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRAL 804 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333334444443333333333222222 22 46788888888777665554433
No 178
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=40.07 E-value=5.4e+02 Score=31.00 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=15.6
Q ss_pred CCCCCcHHHHHHHHHhccchhhHH
Q 002103 633 PDKPVTNAQAAVALAIGEASDAVN 656 (966)
Q Consensus 633 PnKPVTRAEAAAaL~~G~~~e~v~ 656 (966)
+...-+..++|.....+++.+..+
T Consensus 104 ~~~~~~~~~s~~~~~~~~~f~i~~ 127 (447)
T KOG2751|consen 104 SDGSNTKTLSATINVLTRLFDILS 127 (447)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhh
Confidence 445556677777777777766644
No 179
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=40.07 E-value=6.4e+02 Score=31.72 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 002103 704 VEKMAEEARQELERL 718 (966)
Q Consensus 704 vEk~~eea~~eLe~~ 718 (966)
++++.++.+..+++|
T Consensus 379 ~~~~~~~~~~~~~~e 393 (657)
T KOG1854|consen 379 LFKLIEEIRSSSKNE 393 (657)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 180
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=39.90 E-value=3.9e+02 Score=27.16 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002103 708 AEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLE 755 (966)
Q Consensus 708 ~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q 755 (966)
|+....|-..+...-|+-+.+|++=|...-.-.++|.++|+.......
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~ 91 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSE 91 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555566666666666666676777777777777766554433
No 181
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=39.74 E-value=5.6e+02 Score=28.34 Aligned_cols=11 Identities=36% Similarity=0.664 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 002103 655 VNEELQRIEAE 665 (966)
Q Consensus 655 v~eEL~RlEAE 665 (966)
+..+++|++|+
T Consensus 86 l~~~~~~l~a~ 96 (423)
T TIGR01843 86 LESQVLRLEAE 96 (423)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 182
>KOG4429 consensus Uncharacterized conserved protein, contains SH3 and FCH domains [General function prediction only]
Probab=39.67 E-value=4e+02 Score=30.83 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHh------hHHHHHHHHHHHHH
Q 002103 688 ESFEKELSMERE------KIDVVEKMAEEARQ 713 (966)
Q Consensus 688 ~~f~~el~~Er~------~~~~vEk~~eea~~ 713 (966)
--|++.+++.|. +-+++||+-+.+.+
T Consensus 50 dk~deqiKaKkkLmV~aKkheaL~kl~eSaeq 81 (421)
T KOG4429|consen 50 DKKDEQIKAKKKLMVLAKKHEALEKLEESAEQ 81 (421)
T ss_pred hhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 368888888774 44566666655543
No 183
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=39.65 E-value=5.1e+02 Score=27.82 Aligned_cols=114 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhHHHHHHHH
Q 002103 666 SAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRA---EREVDKIALMKERAAIESEMEI 742 (966)
Q Consensus 666 ~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~---ere~e~~~llKerAa~e~e~q~ 742 (966)
..+........+.-.+.++.|+ -|.++...=..++..+++-.+......+++.. .++++++.|=+....++.-++.
T Consensus 24 ~~~~~~~~~~~~~~~~sQ~~id-~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~ 102 (251)
T PF11932_consen 24 DQAQQVQQQWVQAAQQSQKRID-QWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhcceehhhH--HHHHHHHHHHHHH
Q 002103 743 LSKLRREVEEQLESLMSNKVEISYE--KERINMLRKEAEN 780 (966)
Q Consensus 743 L~~Lr~EVde~~q~L~s~kvei~~E--k~~l~kL~~~~e~ 780 (966)
|.-+=..+-+.|+.+...-+=+..| ..||++|...+..
T Consensus 103 l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~ 142 (251)
T PF11932_consen 103 LVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDD 142 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhc
No 184
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=39.43 E-value=4.4e+02 Score=27.00 Aligned_cols=68 Identities=24% Similarity=0.301 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHH
Q 002103 703 VVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRK 776 (966)
Q Consensus 703 ~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~ 776 (966)
+.+++.+.|..+.+..+. |..-.+.+-..+.-+..+.+++..+-.++.+.|..|..+ +| +.-|.+|..
T Consensus 44 ~~~~i~~~a~~~ae~ek~-r~~s~a~~e~r~~~l~ar~el~~~v~~~a~~~l~~~~~~--~Y---~~~l~~li~ 111 (198)
T PRK03963 44 KAEWILRKAKTQAELEKQ-RIIANAKLEVRRKRLAVQEELISEVLEAVRERLAELPED--EY---FETLKALTK 111 (198)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hH---HHHHHHHHH
Confidence 345555566655555444 333334444455666778888888999999888888775 22 245555544
No 185
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=39.19 E-value=9.2e+02 Score=30.69 Aligned_cols=100 Identities=22% Similarity=0.289 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHH
Q 002103 700 KIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAE 779 (966)
Q Consensus 700 ~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e 779 (966)
.+-+.|. +++.-.-|=...++++..+..||.||..+-....+|..=+...+++.+.| +..+-..+.++.+|..++-
T Consensus 459 ~gsA~ed-~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l---~~~~~~~~~~i~~leeq~~ 534 (698)
T KOG0978|consen 459 IGSAFED-MQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTL---KASVDKLELKIGKLEEQER 534 (698)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3334444 44445556666788899999999999888777666666666666665555 4556677777777777766
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 002103 780 NENQEIARLQYELEVERKALSMAR 803 (966)
Q Consensus 780 ~~~q~i~~~k~~LE~EkkAL~maR 803 (966)
.=......+.-+|....-+|.|.+
T Consensus 535 ~lt~~~~~l~~el~~~~~~le~~k 558 (698)
T KOG0978|consen 535 GLTSNESKLIKELTTLTQSLEMLK 558 (698)
T ss_pred HhhHhhhhhHHHHHHHHHHHHHHH
Confidence 666666666666666666666664
No 186
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=39.12 E-value=3.4e+02 Score=31.03 Aligned_cols=66 Identities=23% Similarity=0.338 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh----hhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002103 734 AAIESEMEILSKLRREVEEQLESL----MSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKAL 799 (966)
Q Consensus 734 Aa~e~e~q~L~~Lr~EVde~~q~L----~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL 799 (966)
++|..|++-|+.....++-.-|+| ...-..|.+=...|....+.++.-.+++.++|++||-=..|.
T Consensus 63 s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 63 SALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555566666665555555444443 344455566666677777777777788888888887444433
No 187
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=38.90 E-value=3.2e+02 Score=32.95 Aligned_cols=62 Identities=24% Similarity=0.310 Sum_probs=43.3
Q ss_pred ccccchHHHHHhHHHHHHHHHHhhhhcc-------cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002103 854 GKQFSVDQTVSRAQSLVDKLKAMANDVS-------GKSKEIINTIIHKILLFISNLKKWASKASMRAAELKD 918 (966)
Q Consensus 854 ~~~~~~~~~~~ra~~l~~klk~m~~~~~-------~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~ 918 (966)
.|...-++-+.-|....+|||.--..+- |+| |+.|=+||.+.-++|-+--..++.+.++.+.
T Consensus 354 kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgss---lDdVD~kIleak~al~evtt~lrErl~RWqQ 422 (575)
T KOG4403|consen 354 KKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSS---LDDVDHKILEAKSALSEVTTLLRERLHRWQQ 422 (575)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888888887655544 444 7778888888877777666666666655543
No 188
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=38.69 E-value=4.3e+02 Score=33.09 Aligned_cols=61 Identities=18% Similarity=0.387 Sum_probs=36.0
Q ss_pred cCCCCCccHHHHHHHHHHhhccccccccccccccccccCCCCCCccCCCCCCCChHHHHHHHHcCCcccCcccccCCCCC
Q 002103 473 VKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEE 552 (966)
Q Consensus 473 F~PnepITRaEFARWLVrA~n~L~Rnp~srV~Pa~~isgste~aF~DVppsDPDF~yIQaAAEAGII~GkLSG~~~~s~d 552 (966)
.....-+.|+|..+|+... + .|.+ .=+||+|- |+ .+..+|.. .
T Consensus 269 ~~S~r~~~~~eVve~I~~l-G----------~Pvv--------VAtDVtp~-P~--~V~KiAas-----f---------- 311 (652)
T COG2433 269 LESRRGIDRSEVVEFISEL-G----------KPVV--------VATDVTPA-PE--TVKKIAAS-----F---------- 311 (652)
T ss_pred eeccccCCHHHHHHHHHHc-C----------CceE--------EEccCCCC-hH--HHHHHHHH-----c----------
Confidence 4566778888888887663 1 1332 34588543 43 34443321 1
Q ss_pred CCCCccCCCCcCcHHHHHH
Q 002103 553 PGPIFFLPESPLSRQDLVS 571 (966)
Q Consensus 553 dG~~tFrPD~PITRQELAs 571 (966)
|...|-|++-||=+|=..
T Consensus 312 -~A~ly~P~~dLsveEK~~ 329 (652)
T COG2433 312 -NAVLYTPDRDLSVEEKQE 329 (652)
T ss_pred -CCcccCCcccCCHHHHHH
Confidence 344788999888777543
No 189
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=38.50 E-value=4.1e+02 Score=31.62 Aligned_cols=67 Identities=28% Similarity=0.432 Sum_probs=46.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002103 730 MKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 800 (966)
Q Consensus 730 lKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ 800 (966)
.||||.-|.|-..- +|+-|-.-|-|...-+|+-.-.|++.|. +++|.+..++.+++-.+.+--.||.
T Consensus 321 akek~~KEAqarea-klqaec~rQ~qlaLEEKaaLrkerd~L~---keLeekkreleql~~q~~v~~saLd 387 (442)
T PF06637_consen 321 AKEKAGKEAQAREA-KLQAECARQTQLALEEKAALRKERDSLA---KELEEKKRELEQLKMQLAVKTSALD 387 (442)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 45555555554432 7788888888888888877777776654 4677777777888888877777764
No 190
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=38.48 E-value=5.6e+02 Score=30.60 Aligned_cols=44 Identities=30% Similarity=0.339 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 002103 703 VVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKL 746 (966)
Q Consensus 703 ~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~L 746 (966)
+-||.-.||.....+++++....-.-.|.|+||+..|+..|.+-
T Consensus 321 akek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~ke 364 (442)
T PF06637_consen 321 AKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKE 364 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666888888777777888888888888877653
No 191
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=38.40 E-value=6.5e+02 Score=32.60 Aligned_cols=61 Identities=25% Similarity=0.158 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHH
Q 002103 703 VVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEK 768 (966)
Q Consensus 703 ~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek 768 (966)
.+.|-|++....|.--+..+.+|..-+.|-+-.+|.|+ -|.|-||+-++=.-++-..-.|.
T Consensus 900 ~~~~~~e~~~~~l~sk~~q~~~e~er~rk~qE~~E~ER-----~rrEaeek~rre~ee~k~~k~e~ 960 (1259)
T KOG0163|consen 900 VAVKNYEKLVKRLDSKEQQQIEELERLRKIQELAEAER-----KRREAEEKRRREEEEKKRAKAEM 960 (1259)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHH
Confidence 34555555555554433344444444555444444443 35555555554444433333333
No 192
>cd07683 F-BAR_srGAP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of CNS (central nervous system) tissues. It is an important downstream signaling molecule of Robo1. srGAP1 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-cha
Probab=38.39 E-value=6.2e+02 Score=28.48 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH------HH-
Q 002103 683 EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQ------LE- 755 (966)
Q Consensus 683 ~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~------~q- 755 (966)
-.||+.||.+.=..|++=...++||+..-..--..-+..+.-....+ +++.+-|=.++|...+.+-.+- |.
T Consensus 21 LqDlqdF~RrRAeIE~EYS~~L~KLa~~f~~K~~s~~~~~~~~~~s~--~~S~~~~W~~lL~qT~~~sk~h~~LSd~y~~ 98 (253)
T cd07683 21 LQDLQDFFRKKAEIESEYSRNLEKLAERFMAKTRSTKDHQQYKKDQN--LLSPVNCWYLLLNQVRRESKDHATLSDIYLN 98 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46999999998888888888888888665542210000100111222 5778888888888877765441 11
Q ss_pred HhhhcceehhhHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHH
Q 002103 756 SLMSNKVEISYEKERINMLRKEAENE-NQEIARLQYELEVERKALSMAR 803 (966)
Q Consensus 756 ~L~s~kvei~~Ek~~l~kL~~~~e~~-~q~i~~~k~~LE~EkkAL~maR 803 (966)
.|+..=..+..+-.||.|-.+|+..+ |+++.++..||.-=.|--.|-.
T Consensus 99 ~~~~r~~~~~ed~~ri~kkskEi~~~~~eeLlkV~~EL~t~mKtY~~y~ 147 (253)
T cd07683 99 NVIMRFMQISEDSTRMFKKSKEIAFQLHEDLMKVLNELYTVMKTYHMYH 147 (253)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222223777888999999998775 6789999999987555544444
No 193
>COG1318 Predicted transcriptional regulators [Transcription]
Probab=37.66 E-value=2e+02 Score=30.75 Aligned_cols=100 Identities=27% Similarity=0.229 Sum_probs=53.9
Q ss_pred CCCCCc----HHHHHHHHH---hccchhhHHHHHHHHHHHHHhhHHHHhh---HHHHHHHHHHHHHHHHHHHHHHH--hh
Q 002103 633 PDKPVT----NAQAAVALA---IGEASDAVNEELQRIEAESAAENAVSEH---SALVAEVEKEINESFEKELSMER--EK 700 (966)
Q Consensus 633 PnKPVT----RAEAAAaL~---~G~~~e~v~eEL~RlEAE~~a~~av~~~---~~l~~~~~~di~~~f~~el~~Er--~~ 700 (966)
|..++| +|.||.+|. .|..-+-|-+||-|.|+- .|+-..++ +.|+-+. -++++.+. .-
T Consensus 38 ~~~~lTWvdSLavAAga~arekag~Ti~EIAeelG~TeqT--ir~hlkgetkAG~lv~et--------Y~~lK~G~~~~~ 107 (182)
T COG1318 38 PYERLTWVDSLAVAAGALAREKAGMTISEIAEELGRTEQT--VRNHLKGETKAGQLVRET--------YEKLKEGGLDAV 107 (182)
T ss_pred cccccchhhHHHHHHHHHHHHHccCcHHHHHHHhCCCHHH--HHHHHhcchhhhhHHHHH--------HHHHHccCcchH
Confidence 555665 588888887 566667777888887742 23322221 2222221 22222221 00
Q ss_pred HHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 002103 701 IDVVEKM---A---EEARQELERLRAEREVDKIALMKERAAIESEMEI 742 (966)
Q Consensus 701 ~~~vEk~---~---eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~ 742 (966)
.++.+++ . .-|..+|++++.+...-+-+++++++.++-=+..
T Consensus 108 ~~~~~~~~~e~l~i~wa~~~l~ki~~~~~~~~ke~~e~k~K~~~~k~~ 155 (182)
T COG1318 108 EVEIEKLEKEGLKIRWAVEVLKKIKGEHFPMDKELLEEKLKGEVIKGE 155 (182)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhcccccHHHHHHHHHHHHHhhc
Confidence 1111111 1 1256677788877777777777777777655444
No 194
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=37.60 E-value=2.1e+02 Score=29.69 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=7.7
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 002103 798 ALSMARAWAEDEAKRARE 815 (966)
Q Consensus 798 AL~maR~WaEdEA~r~~e 815 (966)
||.|--.=+|+..++.++
T Consensus 155 ~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 155 ALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 195
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=37.39 E-value=1.2e+03 Score=31.48 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=10.7
Q ss_pred CCCcCcHHHHHHH
Q 002103 560 PESPLSRQDLVSW 572 (966)
Q Consensus 560 PD~PITRQELAsW 572 (966)
...|+||.+|..+
T Consensus 139 ~~~plt~~~l~~~ 151 (1353)
T TIGR02680 139 AGIPLTRDRLKEA 151 (1353)
T ss_pred CCccCCHHHHHHH
Confidence 5789999998864
No 196
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=37.19 E-value=3.1e+02 Score=24.68 Aligned_cols=56 Identities=34% Similarity=0.485 Sum_probs=36.4
Q ss_pred HHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002103 661 RIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRA 720 (966)
Q Consensus 661 RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ 720 (966)
-|+||-.|.+++..+ |- ++ +.-+..|+.+|..-..+..+++.-....+.+++++|.
T Consensus 5 aL~~EirakQ~~~eE--L~-kv-k~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEE--LT-KV-KSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHH--HH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHH--HH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 366777777766655 32 33 3445678888877777777777777777777776664
No 197
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=37.03 E-value=5.3e+02 Score=27.30 Aligned_cols=140 Identities=19% Similarity=0.243 Sum_probs=71.0
Q ss_pred HHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 002103 662 IEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEME 741 (966)
Q Consensus 662 lEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q 741 (966)
.|.|.+|..-..--..|..++...|. -|-.++..+|.... .+.+++...+..-...+.|-|..-+.--+
T Consensus 67 ~e~e~~a~~H~~~a~~L~~~v~~~l~-~~~~~~~~~rK~~~----------~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~ 135 (236)
T cd07651 67 LETESMAKSHLKFAKQIRQDLEEKLA-AFASSYTQKRKKIQ----------SHMEKLLKKKQDQEKYLEKAREKYEADCS 135 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444432222334444455664 46777776665542 23333333344444555555555554444
Q ss_pred HHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002103 742 ILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALE 821 (966)
Q Consensus 742 ~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLE 821 (966)
.+-.++.+. + .++.+ .++|+...++.-.+.+...+...+.=.++|.-.|.=-+.+-..+=.+-.-||
T Consensus 136 ~~e~~~~~~----~-~~~~k--------e~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lE 202 (236)
T cd07651 136 KINSYTLQS----Q-LTWGK--------ELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLE 202 (236)
T ss_pred hHHHHHHHH----c-ccCcc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444321 1 12222 3677777777777777777777766666666665323333344444445555
Q ss_pred HHhh
Q 002103 822 GARD 825 (966)
Q Consensus 822 ea~~ 825 (966)
+-|-
T Consensus 203 e~Ri 206 (236)
T cd07651 203 EERI 206 (236)
T ss_pred HHHH
Confidence 5443
No 198
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=36.89 E-value=7.2e+02 Score=28.73 Aligned_cols=54 Identities=26% Similarity=0.223 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002103 766 YEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGA 823 (966)
Q Consensus 766 ~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea 823 (966)
.|..|-+|-...+..+.|.|.+|+-..--|-.||.+|-.= -+.-|-+|+.+|.|
T Consensus 390 reerrkqkeeeklk~e~qkikeleek~~eeedal~~all~----~qeirl~~~lkek~ 443 (445)
T KOG2891|consen 390 REERRKQKEEEKLKAEEQKIKELEEKIKEEEDALLLALLN----LQEIRLIAELKEKA 443 (445)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHhh
Confidence 3455666666777777788888877776666777665221 12234455555543
No 199
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.88 E-value=1.8e+02 Score=31.23 Aligned_cols=13 Identities=8% Similarity=0.291 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q 002103 709 EEARQELERLRAE 721 (966)
Q Consensus 709 eea~~eLe~~r~e 721 (966)
.++..||++++++
T Consensus 96 p~le~el~~l~~~ 108 (206)
T PRK10884 96 PDLENQVKTLTDK 108 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 3445666666643
No 200
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=36.78 E-value=1.6e+02 Score=36.47 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002103 769 ERINMLRKEAENENQEIARLQYELEVE 795 (966)
Q Consensus 769 ~~l~kL~~~~e~~~q~i~~~k~~LE~E 795 (966)
.+++.|++.+.++++++++||-++|.-
T Consensus 114 ~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 114 TKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 456777788888888888887776653
No 201
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=35.97 E-value=1.9e+02 Score=33.95 Aligned_cols=50 Identities=38% Similarity=0.378 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 002103 676 SALVAEVEKEIN--ESFEKELSMEREKIDV----VEKMAEEARQELERLRAEREVD 725 (966)
Q Consensus 676 ~~l~~~~~~di~--~~f~~el~~Er~~~~~----vEk~~eea~~eLe~~r~ere~e 725 (966)
.+|+-++++|-- .--++++..||+|+.. |||+++|..-|.+.||++++.+
T Consensus 209 ~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~re 264 (561)
T KOG1103|consen 209 EEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELERE 264 (561)
T ss_pred HHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777752 3457788899998764 8888888888888888865543
No 202
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=35.78 E-value=87 Score=30.29 Aligned_cols=61 Identities=36% Similarity=0.368 Sum_probs=36.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 002103 693 ELSMEREKIDVVEKMAEEARQELERLRAEREVD----KIALMKERAAIESEMEILSKLRREVEEQ 753 (966)
Q Consensus 693 el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e----~~~llKerAa~e~e~q~L~~Lr~EVde~ 753 (966)
+|..|+.+...+|+-...+-.|||.|-+.==.+ -+.--++|++++.....|-.--.|.+..
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~ 66 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEAL 66 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888888888877643222 2233456666666655544443444433
No 203
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=35.69 E-value=9.4e+02 Score=29.77 Aligned_cols=40 Identities=30% Similarity=0.523 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002103 683 EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAERE 723 (966)
Q Consensus 683 ~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere 723 (966)
+..+. ....+|..++++-+.++...+++....+.++.+++
T Consensus 170 ~~~v~-~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~ 209 (546)
T PF07888_consen 170 REEVE-RLEAELEQEEEEMEQLKQQQKELTESSEELKEERE 209 (546)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 45666666666666666666655555555544433
No 204
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.67 E-value=1.2e+02 Score=35.31 Aligned_cols=11 Identities=0% Similarity=0.238 Sum_probs=6.7
Q ss_pred HHHHHHHhHHH
Q 002103 798 ALSMARAWAED 808 (966)
Q Consensus 798 AL~maR~WaEd 808 (966)
...+|-+|+++
T Consensus 268 niDIL~~k~~e 278 (365)
T KOG2391|consen 268 NIDILKSKVRE 278 (365)
T ss_pred hhHHHHHHHHH
Confidence 34456677765
No 205
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=34.99 E-value=5.9e+02 Score=27.22 Aligned_cols=93 Identities=23% Similarity=0.343 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHH
Q 002103 734 AAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRA 813 (966)
Q Consensus 734 Aa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~ 813 (966)
|+|.-..++|..|..||-|-=.-+-.++..+..=+.+++--..-...-++.+..|+.-|+.=+.-|..++.=++-=-...
T Consensus 60 AaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el 139 (188)
T PF05335_consen 60 AALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQEL 139 (188)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666665555444444444444444444444444444444455555555544444444444444434444
Q ss_pred HHHHHHHHHHhhH
Q 002103 814 REQAKALEGARDR 826 (966)
Q Consensus 814 ~e~A~vLEea~~r 826 (966)
.|.-..||.|++|
T Consensus 140 ~eK~qLLeaAk~R 152 (188)
T PF05335_consen 140 AEKTQLLEAAKRR 152 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555554
No 206
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=34.75 E-value=2.5e+02 Score=31.58 Aligned_cols=56 Identities=27% Similarity=0.334 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002103 737 ESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYEL 792 (966)
Q Consensus 737 e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~L 792 (966)
..++..|..-+.|++++++.+..++-++..++...++....++.++.++...+-+.
T Consensus 25 ~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a 80 (344)
T PF12777_consen 25 EEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEA 80 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555544444444444444444444544444444444333
No 207
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=34.71 E-value=3.2e+02 Score=34.74 Aligned_cols=78 Identities=32% Similarity=0.374 Sum_probs=43.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----
Q 002103 728 ALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMAR---- 803 (966)
Q Consensus 728 ~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR---- 803 (966)
.|-.|||+++.+-.-+-.=|.-||.|.+- -+..-+.-..+|+...+.+-.+--+.|-|+.|--|+-
T Consensus 393 al~~era~l~a~w~rv~egrr~v~~mv~~----------grk~~~~~~~e~~ar~~~l~~v~re~eeer~aalias~~l~ 462 (828)
T PF04094_consen 393 ALAAERAALDAEWARVDEGRRAVDAMVEV----------GRKAHQAHLAEIQAREETLDSVMRETEEERQAALIASSVLD 462 (828)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677776665555555556666442 2222233345555555555555555555555544432
Q ss_pred -----------HhHHHHHHHHHH
Q 002103 804 -----------AWAEDEAKRARE 815 (966)
Q Consensus 804 -----------~WaEdEA~r~~e 815 (966)
+|+||=+||...
T Consensus 463 ea~~~irlqy~~~~~~l~k~~~~ 485 (828)
T PF04094_consen 463 EALGDIRLQYEAHAEDLAKRVDD 485 (828)
T ss_pred hhccccccccchHHHHHHHHHHh
Confidence 788888877654
No 208
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=34.69 E-value=1.2e+02 Score=29.90 Aligned_cols=63 Identities=11% Similarity=0.194 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhhhh
Q 002103 889 NTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAG 951 (966)
Q Consensus 889 ~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~~ 951 (966)
+.++..+..|++.+-+-....+.-+.+=-+...+++...+.+++.+..+-+..+..++|-.|+
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~ 73 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAAD 73 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 444444444444443333333333333333345566667777777777777667666666554
No 209
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=34.34 E-value=1e+03 Score=29.72 Aligned_cols=15 Identities=13% Similarity=0.461 Sum_probs=8.3
Q ss_pred cchHHHHHHHHHHHH
Q 002103 882 GKSKEIINTIIHKIL 896 (966)
Q Consensus 882 ~~~~~~~~~~~~~i~ 896 (966)
|-....|...|.|+.
T Consensus 406 ~E~h~aLq~amekLq 420 (617)
T PF15070_consen 406 GETHQALQEAMEKLQ 420 (617)
T ss_pred ccchHHHHHHHHHHH
Confidence 344555666666654
No 210
>PF07096 DUF1358: Protein of unknown function (DUF1358); InterPro: IPR009792 This family consists of several hypothetical eukaryotic proteins of around 125 residues in length. The function of this family is unknown.
Probab=34.25 E-value=18 Score=36.33 Aligned_cols=44 Identities=36% Similarity=0.406 Sum_probs=35.4
Q ss_pred CCCCCchhHHhhhcCCCCccccchhhHHHHHhhhhHHhhhccccc
Q 002103 78 SGNDGEQSIESQKKGGLGGIVQAGVAGVVLFAGLTFAALSLSKRS 122 (966)
Q Consensus 78 s~~~~~~s~~~~~k~~~~g~v~~gvagv~l~~gl~faa~s~sk~~ 122 (966)
+.+..+.+.+++|...-+|+..++|||+-+++|.+.. |++.|+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~FL~~Va~~s~~aGF~~t-l~~aKKk 56 (124)
T PF07096_consen 13 SAKTEEGSEKSRKFLIKGGAFLGGVAGASALAGFGTT-LALAKKK 56 (124)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhc
Confidence 3356678889999999999999999999999998765 4555543
No 211
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=34.14 E-value=1e+03 Score=31.10 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=18.3
Q ss_pred CCcccccCCCccccccc----CCCccccCCCCCCccccc
Q 002103 344 GDTETVASPSTIKNVEQ----SEKPLLSGEDSSSSMEVH 378 (966)
Q Consensus 344 ~~~~~~~~~s~~~~~~~----~~~~~~~~~~~~~~~~~~ 378 (966)
+++--++.+|+++++-. |..-.--+++-+|-...|
T Consensus 531 DEEaklP~~s~qhFT~~vHe~~k~HfRL~~PRkSklksH 569 (1259)
T KOG0163|consen 531 DEEAKLPKPSYQHFTARVHESNKNHFRLDLPRKSKLKSH 569 (1259)
T ss_pred hhhccCCCcchHHHHHHHHHhhhcceeecCCchhhhhhh
Confidence 44555677777777642 222333445555554444
No 212
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=33.84 E-value=40 Score=30.95 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhcCcEE-----------------EEcCCccccccccchhhhcccccc
Q 002103 806 AEDEAKRAREQAKALEGARDRWERQGIKV-----------------VVDKDLREESDAAVMWVNAGKQFS 858 (966)
Q Consensus 806 aEdEA~r~~e~A~vLEea~~rW~~~gikv-----------------~vd~~~~~~~~~~~~w~~~~~~~~ 858 (966)
.+-+.++.+++..+|.+++..=..+||.+ .|---++...++|-||.--|+.-.
T Consensus 12 ~~~~~~~~~e~~~~~~~i~~~~~~~Gis~~el~~~~~~~~~~~~~~~~~~KYr~p~~~g~tWsGrGr~P~ 81 (93)
T PF00816_consen 12 KEIEERRKQEREEAIAEIRELMAEYGISPEELAFGSAKKKKKRKRAKVPPKYRNPENPGETWSGRGRRPK 81 (93)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHTT--HHHCHHCCS-----EEEECSSESEEECSSSSEEECSSSSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHhhhhhhccccccccCCCCCeEeecCCCCCEeeccCCCCH
Confidence 45566777888889999999988999764 111223444456889997776643
No 213
>PRK11519 tyrosine kinase; Provisional
Probab=33.26 E-value=1e+03 Score=29.53 Aligned_cols=17 Identities=0% Similarity=-0.001 Sum_probs=10.5
Q ss_pred ccCCCCCCcHHHHHHHH
Q 002103 630 LFQPDKPVTNAQAAVAL 646 (966)
Q Consensus 630 ~FQPnKPVTRAEAAAaL 646 (966)
.|+..+|..=+..|-+|
T Consensus 233 s~~~~dP~~Aa~iaN~l 249 (719)
T PRK11519 233 TYTGEDREQIRDILNSI 249 (719)
T ss_pred EEEcCCHHHHHHHHHHH
Confidence 47777776555555444
No 214
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=32.95 E-value=1.1e+03 Score=29.92 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHh
Q 002103 768 KERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWE 828 (966)
Q Consensus 768 k~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~rW~ 828 (966)
-..+..+..+++.+.+.+.+.+.+++.+.+-+.. +.=..++........+.+++....+.
T Consensus 276 ~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 335 (908)
T COG0419 276 LRELERLLEELEEKIERLEELEREIEELEEELEG-LRALLEELEELLEKLKSLEERLEKLE 335 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666667777777766666666655 22233334444445555555444444
No 215
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=32.76 E-value=3.6e+02 Score=33.26 Aligned_cols=61 Identities=25% Similarity=0.160 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHHHhh
Q 002103 682 VEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESE-MEILSKLRREVEEQLESLM 758 (966)
Q Consensus 682 ~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e-~q~L~~Lr~EVde~~q~L~ 758 (966)
.-.|+.+.|.-.+..+|++-. +..+++|+.|+++++-- ...+ ..+|.++..||++|-+.|-
T Consensus 438 ~i~~~~~~~~sd~~~~rer~l---------~a~t~kL~~E~e~~q~~-------~~~~l~~~~~~~~~em~~~r~tlE 499 (588)
T KOG3612|consen 438 AIIDLQESTLSDYSGSRERSL---------VAATEKLRQEFEELQQT-------SRRELPVPLRNFELEMAEMRKTLE 499 (588)
T ss_pred HHHHHHHHHHHHhhcCCccch---------HHHHHHHHHHHHHHHHH-------HhhhhhhhhhcchHHHHHHHHHHH
Confidence 347888999999988887643 23344444444433221 1111 2337778888888776653
No 216
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=32.68 E-value=8.1e+02 Score=28.13 Aligned_cols=125 Identities=22% Similarity=0.288 Sum_probs=60.5
Q ss_pred hccchhhHHHHHHHHH-HHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002103 648 IGEASDAVNEELQRIE-AESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDK 726 (966)
Q Consensus 648 ~G~~~e~v~eEL~RlE-AE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~ 726 (966)
.|+.-+.+..|+.||| ......+.-..+.+++.+. .+| .++..-+++....-.-+.+.+.|...++..+..-.
T Consensus 105 ~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I-~~L-----~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~ 178 (294)
T COG1340 105 GGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKI-KEL-----RKELEDAKKALEENEKLKELKAEIDELKKKAREIH 178 (294)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888888888 4444445445566666654 222 12222344444444444444455555554433221
Q ss_pred H--HHhhhhhHHHHHHH------HHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002103 727 I--ALMKERAAIESEME------ILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELE 793 (966)
Q Consensus 727 ~--~llKerAa~e~e~q------~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE 793 (966)
. .-|-+.| =+|-.+ -.-.+|.+.|+|-+ .+-+++..+...|+++-.++.+|.
T Consensus 179 eki~~la~ea-qe~he~m~k~~~~~De~Rkeade~he--------------~~ve~~~~~~e~~ee~~~~~~elr 238 (294)
T COG1340 179 EKIQELANEA-QEYHEEMIKLFEEADELRKEADELHE--------------EFVELSKKIDELHEEFRNLQNELR 238 (294)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1 1122222 111111 12234555555543 345566666666666666666543
No 217
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=32.65 E-value=4.4e+02 Score=34.46 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=29.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002103 692 KELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKER 733 (966)
Q Consensus 692 ~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKer 733 (966)
++..+||.+.+--.+..++.++|..||...+.+.-..|.|..
T Consensus 1114 dK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~ 1155 (1189)
T KOG1265|consen 1114 DKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKH 1155 (1189)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777788887777777666666655543
No 218
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=32.64 E-value=1.3e+03 Score=30.58 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Q 002103 769 ERINMLRKEAENENQEIARLQYELE 793 (966)
Q Consensus 769 ~~l~kL~~~~e~~~q~i~~~k~~LE 793 (966)
+|.+-|+-++|.-.+.+..+..+||
T Consensus 325 ERaesLQ~eve~lkEr~deletdlE 349 (1243)
T KOG0971|consen 325 ERAESLQQEVEALKERVDELETDLE 349 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777766666666555544
No 219
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=32.33 E-value=1.1e+03 Score=29.64 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=18.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 002103 883 KSKEIINTIIHKILLFISNLKK 904 (966)
Q Consensus 883 ~~~~~~~~~~~~i~~~i~~l~~ 904 (966)
-...||.|.++++-..|..++.
T Consensus 416 ~~~Giipral~~lF~~~~~~~~ 437 (670)
T KOG0239|consen 416 EDPGIIPRALEKLFRTITSLKS 437 (670)
T ss_pred ccCCccHHHHHHHHHHHHhhcc
Confidence 4788999999999988888875
No 220
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=32.26 E-value=1.1e+03 Score=29.29 Aligned_cols=136 Identities=14% Similarity=0.206 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhHHHHhhHHHHHHHH-------------------HHHHHHHHHHHHHHHhhHHHHHHH------
Q 002103 653 DAVNEELQRIEAESAAENAVSEHSALVAEVE-------------------KEINESFEKELSMEREKIDVVEKM------ 707 (966)
Q Consensus 653 e~v~eEL~RlEAE~~a~~av~~~~~l~~~~~-------------------~di~~~f~~el~~Er~~~~~vEk~------ 707 (966)
..++.+|...+++.++-++.... +..++. .-|+..=.+....+++....-.+.
T Consensus 240 ~~l~~ql~~a~~~~~~a~a~~~~--l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~ 317 (754)
T TIGR01005 240 AELNTELSRARANRAAAEGTADS--VKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPR 317 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHH
Q 002103 708 AEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIAR 787 (966)
Q Consensus 708 ~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~ 787 (966)
...++.+++.++....++...++ +.++.+.+.+......++.+++.+-..-..+......+..|+.+++..++-...
T Consensus 318 v~~l~~qi~~l~~~i~~e~~~~~---~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ 394 (754)
T TIGR01005 318 VVAAKSSLADLDAQIRSELQKIT---KSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYES 394 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHH
Q 002103 788 LQYELE 793 (966)
Q Consensus 788 ~k~~LE 793 (966)
+-.-+|
T Consensus 395 ll~r~~ 400 (754)
T TIGR01005 395 YLTNYR 400 (754)
T ss_pred HHHHHH
No 221
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=31.94 E-value=4.1e+02 Score=24.42 Aligned_cols=130 Identities=13% Similarity=0.104 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHhhcCcEEEEcC-Cccccccccc
Q 002103 771 INMLRKEAENENQEIARLQYELE-VERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDK-DLREESDAAV 848 (966)
Q Consensus 771 l~kL~~~~e~~~q~i~~~k~~LE-~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~rW~~~gikv~vd~-~~~~~~~~~~ 848 (966)
|+.|..-+..+++.....++.-- +....+.=+..+.++.|...++|+.-+.+ |=...|..+.... ++.+ .+.+
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~~~~~~~~l~~~~~~~a~e~~~h~~~l~e---~i~~lgg~p~~~~~~~~~--~~~~ 75 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNFDGPNFPGLAKFFQDQAEEEREHADELAE---RILMLGGKPSGSPVEIPE--IPKP 75 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTS-SSTSHHHHHH--HHSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHhHHHHHHHHHHHHHHHH---HHhcCCCCCCCcHHHhhh--hhcc
Confidence 45566666666666655554422 22334444567788888888888877765 3333443222211 1111 1111
Q ss_pred hhhhcccccchHHHHHhH----HHHHHHHHHhhhhcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002103 849 MWVNAGKQFSVDQTVSRA----QSLVDKLKAMANDVS----GKSKEIINTIIHKILLFISNLKKWASKAS 910 (966)
Q Consensus 849 ~w~~~~~~~~~~~~~~ra----~~l~~klk~m~~~~~----~~~~~~~~~~~~~i~~~i~~l~~~~~~~~ 910 (966)
.+ -.++.+.+..+ +.+++.++.+..... -...+.+..++.....-+..|+.+..++.
T Consensus 76 ~~-----~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~~~l~~~~~~~~~l~~~l~~l~ 140 (142)
T PF00210_consen 76 PE-----WTDPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFLDEFLEEEEKHIWMLQAHLTNLK 140 (142)
T ss_dssp SS-----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 13555555544 555666665555443 35666777777777677777777766654
No 222
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=31.80 E-value=1.2e+03 Score=29.85 Aligned_cols=100 Identities=21% Similarity=0.325 Sum_probs=58.1
Q ss_pred HHhccchhhHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHH
Q 002103 646 LAIGEASDAVNEELQRIEAESAAENAVS--EHSALVAEVEKEINESFEKELSMEREKIDVVEK-MAEEARQELERLRAER 722 (966)
Q Consensus 646 L~~G~~~e~v~eEL~RlEAE~~a~~av~--~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk-~~eea~~eLe~~r~er 722 (966)
.++-+-.|+...||..+...-.-+..-. +|-+-++-+.+.+. --++.| ..+|- .+.+ ..+|.....++
T Consensus 129 ~~R~~lEE~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~-~Le~~L-------~~le~~r~~e-~~~La~~q~e~ 199 (739)
T PF07111_consen 129 VVRKNLEEGSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAE-ELEKSL-------ESLETRRAGE-AKELAEAQREA 199 (739)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-------HHHHHHHHHH-HHHHHHHHHHH
Confidence 4466667778888877776655444333 24333333333332 111111 11111 1112 24555555566
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 002103 723 EVDKIALMKERAAIESEMEILSKLRREVEEQL 754 (966)
Q Consensus 723 e~e~~~llKerAa~e~e~q~L~~Lr~EVde~~ 754 (966)
+-=...|=|-+.+++.|.-++.+||.-|-+|.
T Consensus 200 d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~ 231 (739)
T PF07111_consen 200 DLLREQLSKTQEELEAQVTLVEQLRKYVGEQV 231 (739)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhC
Confidence 66666788899999999999999999997765
No 223
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=31.79 E-value=7.7e+02 Score=29.43 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=37.3
Q ss_pred HHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002103 753 QLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMA 802 (966)
Q Consensus 753 ~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ma 802 (966)
|++.|..-++--.. +..++||+++++...+++.+++..|..+.+...|.
T Consensus 390 qa~~IL~m~L~~LT-~~e~~kL~~E~~~l~~ei~~l~~~l~~~~~~~~~i 438 (445)
T cd00187 390 QADAILDMRLRRLT-KLEREKLLKELKELEAEIEDLEKILASEERPKDLW 438 (445)
T ss_pred HHHHHHHhHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 55555555544333 56678999999999999999999998888876664
No 224
>PRK10404 hypothetical protein; Provisional
Probab=31.56 E-value=2.2e+02 Score=27.51 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=37.7
Q ss_pred cccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002103 855 KQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMR 912 (966)
Q Consensus 855 ~~~~~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~ 912 (966)
+++.-+....--+.|++-++.|.......+.+-+..+-.++...+...|.+..++...
T Consensus 3 ~~~~~~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~ 60 (101)
T PRK10404 3 NQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDS 60 (101)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4455555555567777777777766666666667777777777776666666655543
No 225
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=31.44 E-value=1.1e+03 Score=29.94 Aligned_cols=21 Identities=19% Similarity=0.003 Sum_probs=15.9
Q ss_pred cccchHHHHHhHHHHHHHHHH
Q 002103 855 KQFSVDQTVSRAQSLVDKLKA 875 (966)
Q Consensus 855 ~~~~~~~~~~ra~~l~~klk~ 875 (966)
..+++.+++.||...+++.+.
T Consensus 586 ~~~d~~~iLsrA~~~~~~gdl 606 (657)
T KOG1854|consen 586 NITDTYKILSRARYHLLKGDL 606 (657)
T ss_pred ccccHHHHHHHHHHHHhcccH
Confidence 346778999999888877543
No 226
>PRK10869 recombination and repair protein; Provisional
Probab=31.22 E-value=1e+03 Score=28.86 Aligned_cols=85 Identities=13% Similarity=0.222 Sum_probs=45.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-H------HHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHHHHHhhh
Q 002103 691 EKELSMEREKIDVVEKMAEEARQELERLRA-E------REVDKIALMKERAA----IESEMEILSKLRREVEEQLESLMS 759 (966)
Q Consensus 691 ~~el~~Er~~~~~vEk~~eea~~eLe~~r~-e------re~e~~~llKerAa----~e~e~q~L~~Lr~EVde~~q~L~s 759 (966)
+++|..|+.+..-.||+++.+..=++.+.. + .-......|..-+. ++.-.+.|..+..++++....|-.
T Consensus 207 ~eeL~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~ 286 (553)
T PRK10869 207 FEQIDEEYKRLANSGQLLTTSQNALQLLADGEEVNILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRH 286 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888777666666632 1 00011111211122 222334455566666666666655
Q ss_pred cceehhhHHHHHHHHH
Q 002103 760 NKVEISYEKERINMLR 775 (966)
Q Consensus 760 ~kvei~~Ek~~l~kL~ 775 (966)
-.-.+.++.++|+.+.
T Consensus 287 ~~~~~~~dp~~l~~ie 302 (553)
T PRK10869 287 YLDRLDLDPNRLAELE 302 (553)
T ss_pred HHhhcCCCHHHHHHHH
Confidence 4444455555555444
No 227
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=31.04 E-value=4.5e+02 Score=32.18 Aligned_cols=30 Identities=23% Similarity=0.174 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 002103 776 KEAENENQEIARLQYELEVERKALSMARAW 805 (966)
Q Consensus 776 ~~~e~~~q~i~~~k~~LE~EkkAL~maR~W 805 (966)
+-.+-+-|-+..|+++-|.=-..|+||+.-
T Consensus 381 kAaqmk~qV~thLrvIeeR~NqsLslL~~~ 410 (615)
T KOG3540|consen 381 KAAQMKSQVMTHLRVIEERINQSLSLLYDV 410 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHhcC
Confidence 445667788999999988888899999843
No 228
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=30.86 E-value=1.5e+03 Score=30.80 Aligned_cols=124 Identities=22% Similarity=0.225 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh------
Q 002103 684 KEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESL------ 757 (966)
Q Consensus 684 ~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L------ 757 (966)
+++.+-|++.+...+++...+|+....+..|...+ -..+..|+-+.--+..+...+..|+...+.+-+.+
T Consensus 303 ~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l----~~~k~~~~~~~~~lq~e~~~~~~l~~~~~~~~~~~~~~~~~ 378 (1294)
T KOG0962|consen 303 GELLSNFEERLEEMGEKLRELEREISDLNEERSSL----IQLKTELDLEQSELQAEAEFHQELKRQRDSLIQELAHQYQL 378 (1294)
T ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57778888888888888888888776555433333 34445555555566666666666677776666633
Q ss_pred -hhcceehhhHHHH-HHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHhHHHHHH
Q 002103 758 -MSNKVEISYEKER-INML----RKEAENENQEIARLQYELEVERKALSMA--RAWAEDEAK 811 (966)
Q Consensus 758 -~s~kvei~~Ek~~-l~kL----~~~~e~~~q~i~~~k~~LE~EkkAL~ma--R~WaEdEA~ 811 (966)
.-...+.|.|... +.++ ...++.+-......-++++..+..+.|. +.|++=++.
T Consensus 379 ~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~~q~~k~~~~~~s~~~~~~~~~~~~~~~l~~~ 440 (1294)
T KOG0962|consen 379 DSVESLEFMAEVKKDFRNLILERFGGLEDDIKQRKKDIAELETNALDLIKEITDREVSLEAQ 440 (1294)
T ss_pred hcccccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344455555433 2221 2223333333334445555666666555 677776654
No 229
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=30.73 E-value=8.9e+02 Score=27.99 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=50.0
Q ss_pred ccccccchhhhcccccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002103 842 EESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATI 921 (966)
Q Consensus 842 ~~~~~~~~w~~~~~~~~~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~ 921 (966)
+..+.-.+|... ....+.+|+..+.+-..|-..|.+-..++.+.+.......=..|++++.++..--.+|..- .
T Consensus 194 ~~~~tp~~W~~~-----s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~q-l 267 (384)
T PF03148_consen 194 KNSSTPESWEEF-----SNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQ-L 267 (384)
T ss_pred ccCCChHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 444555677653 4778999998888877776666655555555554444444456667766666555555444 3
Q ss_pred HHhhhhHHHH
Q 002103 922 LKAKGSVQEL 931 (966)
Q Consensus 922 ~~~~~~~~~~ 931 (966)
.++..-+..+
T Consensus 268 ~~~~~ei~~~ 277 (384)
T PF03148_consen 268 KKTLQEIAEM 277 (384)
T ss_pred HhHHHHHHHH
Confidence 3343334333
No 230
>PRK15396 murein lipoprotein; Provisional
Probab=30.67 E-value=1.8e+02 Score=27.25 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002103 770 RINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQA 817 (966)
Q Consensus 770 ~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A 817 (966)
.+++|+++++.=+..+.+ |..+..+++..--=+.+||.|+.+|=
T Consensus 26 kvd~LssqV~~L~~kvdq----l~~dv~~~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQ----LSNDVNAMRSDVQAAKDDAARANQRL 69 (78)
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666665544444444 44444555555455889999998873
No 231
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=30.41 E-value=2e+02 Score=26.63 Aligned_cols=98 Identities=9% Similarity=0.157 Sum_probs=39.7
Q ss_pred HHHHHhHHHHHHHHHHhhhhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHH
Q 002103 860 DQTVSRAQSLVDKLKAMANDVS-GKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEF 938 (966)
Q Consensus 860 ~~~~~ra~~l~~klk~m~~~~~-~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (966)
++.+..-.+-++-.+.++.++. ...+.++.++++.=..++..|...+.+.+-...+-+.. ...+......+
T Consensus 7 n~Ll~~~~d~~~~Y~~a~~~~~~~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~~gs~--------~g~~~r~~~~i 78 (111)
T PF09537_consen 7 NDLLKGLHDGIEGYEKAAEKAEDPELKSLFQEFAQERQQHAEELQAEIQELGGEPEESGSF--------KGALHRAWMDI 78 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H----HH--------CHHHH-TTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcccCH--------HHHHHHHHHHH
Confidence 3444444455555566666666 66677777777777777777777777777554333222 12233334455
Q ss_pred hhhhcccchh-hhhhhhhhHHhhhhhcc
Q 002103 939 RSNLTEGAKR-VAGDCREGVEKLTQRFK 965 (966)
Q Consensus 939 ~~~~~~~~kr-~~~~c~~gv~k~~~rfk 965 (966)
.+.+..+.+. +.+.|..|=.++-+.|+
T Consensus 79 k~~~~~~d~~aiL~~~~~gE~~~~~~y~ 106 (111)
T PF09537_consen 79 KSALGGDDDEAILEECERGEDMALEAYE 106 (111)
T ss_dssp HHS-----H-------------------
T ss_pred HHHhcCCCccchhhhhhhhhhhhhhhcc
Confidence 5556666564 88999988888777775
No 232
>PTZ00491 major vault protein; Provisional
Probab=30.09 E-value=4.9e+02 Score=33.60 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 002103 706 KMAEEARQELERLRAEREVDKIALMKERAAIESEM 740 (966)
Q Consensus 706 k~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~ 740 (966)
.+-.++-.||++++..|+.|+ .+.|+++.||-++
T Consensus 745 a~~i~~~ael~~~~~~~~~e~-~~~~~~~~le~~k 778 (850)
T PTZ00491 745 ALRIEAEAELEKLRKRQELEL-EYEQAQNELEIAK 778 (850)
T ss_pred HHHHhhHHHHHHHHHHHHHHH-HHHHHHhHHHHHH
Confidence 333444556666666555553 3555555555443
No 233
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=29.98 E-value=5.6e+02 Score=32.08 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=14.4
Q ss_pred ccccCCCcccccccccccccccccCCcccc
Q 002103 119 SKRSTSRPREQMEPLTAAQDVSIVPDHKID 148 (966)
Q Consensus 119 sk~~~~~~~~~m~~lt~~qe~~~~~d~~~d 148 (966)
+|.+.+||-+-+++ |+-+.-|.-++
T Consensus 82 aKK~~kr~~Kglk~-----Eeeg~Edngle 106 (940)
T KOG4661|consen 82 AKKPFKRPMKGLKS-----EEEGKEDNGLE 106 (940)
T ss_pred ccCccccccccccc-----hhhccccCCcc
Confidence 57777766655555 65555553333
No 234
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=29.84 E-value=1.6e+03 Score=30.72 Aligned_cols=99 Identities=20% Similarity=0.211 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHH--HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehh---hHHHHHHH
Q 002103 701 IDVVEKMAEEARQELERLRAEREV--DKI--ALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEIS---YEKERINM 773 (966)
Q Consensus 701 ~~~vEk~~eea~~eLe~~r~ere~--e~~--~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~---~Ek~~l~k 773 (966)
..++++|+++++.=|.+..++-+. +.+ +|-+ .|-..-+-+.+|-.+|.|.+.+|..=-+.+. ....|.++
T Consensus 1470 ~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l---~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~ 1546 (1758)
T KOG0994|consen 1470 NRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLAL---ELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAEN 1546 (1758)
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHH
Confidence 345667777766666554442221 111 1111 1222334566677777776666654433332 35678899
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002103 774 LRKEAENENQEIARLQYELEVERKALSMA 802 (966)
Q Consensus 774 L~~~~e~~~q~i~~~k~~LE~EkkAL~ma 802 (966)
|+++++.-+.....+|-..|.=++||..|
T Consensus 1547 L~s~A~~a~~~A~~v~~~ae~V~eaL~~A 1575 (1758)
T KOG0994|consen 1547 LQSEAERARSRAEDVKGQAEDVVEALEEA 1575 (1758)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888765
No 235
>PF13945 NST1: Salt tolerance down-regulator
Probab=29.73 E-value=1.8e+02 Score=31.12 Aligned_cols=69 Identities=26% Similarity=0.286 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002103 684 KEINESFEKELSMEREKIDVVEKMAEEARQELERLRAERE-VDK-IALMKERAAIESEMEILSKLRREVEEQLESL 757 (966)
Q Consensus 684 ~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere-~e~-~~llKerAa~e~e~q~L~~Lr~EVde~~q~L 757 (966)
.-|+.||+.==..||..++-|||-.. |..+|..+. -+. .+-=+-|.|||.|++.|.....|--+++...
T Consensus 105 e~LkeFW~SL~eeERr~LVkIEKe~V-----LkkmKeqq~h~C~C~vCgr~~~~ie~ele~ly~~~y~~l~~~~~~ 175 (190)
T PF13945_consen 105 EKLKEFWESLSEEERRSLVKIEKEAV-----LKKMKEQQKHSCSCSVCGRKRTAIEEELERLYDAYYEELEQYANH 175 (190)
T ss_pred HHHHHHHHccCHHHHHHHHHhhHHHH-----HHHHHHHhccCcccHHHhchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46888888766677999999998542 334443210 011 2444567899999999998887777766543
No 236
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=29.68 E-value=6.9e+02 Score=30.44 Aligned_cols=67 Identities=27% Similarity=0.396 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHH
Q 002103 709 EEARQELERLRAEREVDKIALMKERAAIESEME----ILSKLRREVEEQLESLMSNKVEISYEKERINMLR 775 (966)
Q Consensus 709 eea~~eLe~~r~ere~e~~~llKerAa~e~e~q----~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~ 775 (966)
.....||+.-|.++-.--.+|-.|+++-.|--+ .|.+|..++-++-+.+.--|-.|..-..||+||-
T Consensus 510 daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~d~~e~i~~~r~~IL~Ne~rIqk~i 580 (583)
T KOG3809|consen 510 DAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKEINDTKEEISKARGRILNNEKRIQKFI 580 (583)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344568888888777777778888887666543 4455666666666666555666666666666653
No 237
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=29.62 E-value=3.4e+02 Score=34.10 Aligned_cols=114 Identities=18% Similarity=0.270 Sum_probs=64.4
Q ss_pred Cccccccccchhhhcc-----cccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHH---HHHHHHHHHHHHHHHHh
Q 002103 839 DLREESDAAVMWVNAG-----KQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIH---KILLFISNLKKWASKAS 910 (966)
Q Consensus 839 ~~~~~~~~~~~w~~~~-----~~~~~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~---~i~~~i~~l~~~~~~~~ 910 (966)
.|-+++--...|.|+. +.-+.+++=.++-+|+-||+....+++.-..+.+..+++ ++..=|..||.-+..+.
T Consensus 4 ~f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~ 83 (766)
T PF10191_consen 4 AFSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQ 83 (766)
T ss_pred hhCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3555555667788863 222334444578999999999999999776666666655 33334455566666665
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhhhhhhhhhHH
Q 002103 911 MRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVE 958 (966)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~~~c~~gv~ 958 (966)
.+...++... .++..... .++. .-.-.+..|+=++.|++.+.
T Consensus 84 ~~~~~v~~~~-~~~e~~t~---~s~~--~L~~ld~vK~rm~~a~~~L~ 125 (766)
T PF10191_consen 84 EQMASVQEEI-KAVEQDTA---QSMA--QLAELDSVKSRMEAARETLQ 125 (766)
T ss_pred HHHHHHHHHH-hhhhccHH---HHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 5555555542 22222111 1111 11224555666667766654
No 238
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=29.55 E-value=6.9e+02 Score=26.36 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002103 684 KEINESFEKELSMEREKIDVVEKMAEE 710 (966)
Q Consensus 684 ~di~~~f~~el~~Er~~~~~vEk~~ee 710 (966)
+||..||.+....|++-...+.|+...
T Consensus 22 ~~l~~f~keRa~iE~eYak~L~kLa~k 48 (251)
T cd07653 22 ERYGKFVKERAAIEQEYAKKLRKLVKK 48 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888777777644
No 239
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=29.36 E-value=2.4e+02 Score=25.17 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002103 770 RINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQA 817 (966)
Q Consensus 770 ~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A 817 (966)
+|++|.++++.=+..|.+|..+. .+|+-.-.=+.+||.|+.+|-
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv----~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDV----NALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 56677777666655555555444 444444445778999998874
No 240
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=29.29 E-value=9.6e+02 Score=27.91 Aligned_cols=16 Identities=6% Similarity=0.312 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHh
Q 002103 653 DAVNEELQRIEAESAA 668 (966)
Q Consensus 653 e~v~eEL~RlEAE~~a 668 (966)
..+..+++||+||.-.
T Consensus 107 ~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 107 DNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566788888887643
No 241
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=29.17 E-value=5.5e+02 Score=25.09 Aligned_cols=51 Identities=22% Similarity=0.319 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002103 743 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVE 795 (966)
Q Consensus 743 L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~E 795 (966)
|..++.|+..+.+.|.+.+-..+.+ ..+++..+++.+.+++.+.+..+..+
T Consensus 52 l~~~~~el~~~~~~l~~~~~~ls~~--~~~~~~~~l~~~~~~l~~~~~~~~~~ 102 (158)
T PF03938_consen 52 LQAKQKELQKLQQKLQSQKATLSEE--ERQKRQQELQQKEQELQQFQQQAQQQ 102 (158)
T ss_dssp HHHHHHHHHHHHHHHTTS----SSH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccchh--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666665544433 23444555555555555554444433
No 242
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=28.94 E-value=9.7e+02 Score=27.87 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=17.1
Q ss_pred ccCCCCCCcHHHHHHHHHhccchhhHHHHHHHHHHHHHh
Q 002103 630 LFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAA 668 (966)
Q Consensus 630 ~FQPnKPVTRAEAAAaL~~G~~~e~v~eEL~RlEAE~~a 668 (966)
..+..+.|.++|.=+-|- ...+..++..+++.-..
T Consensus 74 ~V~eG~~V~~G~~L~~ld----~~~~~~~~~~~~~~~~~ 108 (457)
T TIGR01000 74 YLKENKFVKKGDLLVVYD----NGNEENQKQLLEQQLDN 108 (457)
T ss_pred EcCCCCEecCCCEEEEEC----chHHHHHHHHHHHHHHH
Confidence 466666666665433331 12344555555554433
No 243
>PRK10404 hypothetical protein; Provisional
Probab=28.85 E-value=5.4e+02 Score=24.91 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002103 867 QSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKD 918 (966)
Q Consensus 867 ~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~ 918 (966)
+.|.+-|+.|..++....+..=+.--.++..|-..+......++.+..++.+
T Consensus 8 ~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~ 59 (101)
T PRK10404 8 TRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASD 59 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3455555555555444444443333333333333333333333333333333
No 244
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=28.51 E-value=7.6e+02 Score=30.24 Aligned_cols=91 Identities=26% Similarity=0.363 Sum_probs=15.2
Q ss_pred hccchhhHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHH-H-------HHHHHHHHHHHHHHHH
Q 002103 648 IGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKID-V-------VEKMAEEARQELERLR 719 (966)
Q Consensus 648 ~G~~~e~v~eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~-~-------vEk~~eea~~eLe~~r 719 (966)
+.+.-+.+.+||.||++-+.... ..++..+|.+|..+|+.=.-.+.++.. . -|.+++.--.|+++++
T Consensus 262 s~~~i~~l~~El~RL~~lK~~~l-----k~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk 336 (619)
T PF03999_consen 262 SLDTIEALEEELERLEELKKQNL-----KEFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLK 336 (619)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 34566779999999998775433 347777889999999876554544421 1 3556666667777777
Q ss_pred HH--HHHHHHHHhhhhhHHHHHHHHH
Q 002103 720 AE--REVDKIALMKERAAIESEMEIL 743 (966)
Q Consensus 720 ~e--re~e~~~llKerAa~e~e~q~L 743 (966)
.. .-++..+++.++-.+-.++..|
T Consensus 337 ~~~~~~k~Il~~v~k~~~l~~~~~~L 362 (619)
T PF03999_consen 337 EEYESRKPILELVEKWESLWEEMEEL 362 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 74 3455556666666655555544
No 245
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=28.31 E-value=1.3e+03 Score=29.02 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcceeh
Q 002103 735 AIESEMEILSKLRREVEEQLESLMSNKVEI 764 (966)
Q Consensus 735 a~e~e~q~L~~Lr~EVde~~q~L~s~kvei 764 (966)
.|..+.|+...|+.++-.|.+-+++.+-.+
T Consensus 436 ~~n~~sqL~~~lk~q~~~qee~~s~~~~~~ 465 (607)
T KOG0240|consen 436 QINKQSQLMEKLKEQLLDQEELLSSTRRLY 465 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 345566666667766666666666655443
No 246
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=28.22 E-value=5.8e+02 Score=24.98 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=45.2
Q ss_pred HHHhhhhhHHHHHHHHHHHH---HHHHHHHHHHhhhcceehhhH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002103 727 IALMKERAAIESEMEILSKL---RREVEEQLESLMSNKVEISYE---KERINMLRKEAENENQEIARLQYELEVERKALS 800 (966)
Q Consensus 727 ~~llKerAa~e~e~q~L~~L---r~EVde~~q~L~s~kvei~~E---k~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ 800 (966)
..|-+-+..++.+.+-|..| +.+....+.......+.+..= ..-|..|...+....+.|..++..+|.-++.+.
T Consensus 23 ~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~~~~ 102 (147)
T PRK05689 23 LQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAITQQRQQLTQWTQKVDNARKYWQ 102 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555 555555444444444443322 344788888888888888888888877666544
No 247
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=28.03 E-value=4.8e+02 Score=28.03 Aligned_cols=45 Identities=22% Similarity=0.289 Sum_probs=34.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 002103 692 KELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAI 736 (966)
Q Consensus 692 ~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~ 736 (966)
++...||.+.+---++.++++++.-+|...+++.-..|++..+++
T Consensus 91 dK~e~er~KrEin~s~I~e~V~~ikrL~~~qekrqekL~~kh~e~ 135 (185)
T PF08703_consen 91 DKDEQERLKREINRSHIQEVVQEIKRLEEKQEKRQEKLEEKHEEV 135 (185)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888999999999999888888777777655543
No 248
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=27.93 E-value=5.8e+02 Score=25.60 Aligned_cols=51 Identities=31% Similarity=0.442 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002103 708 AEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSN 760 (966)
Q Consensus 708 ~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~ 760 (966)
=+||..|.+.-|..||+|.- .|+.+++=++-.+-.++..+++..++.|-+.
T Consensus 37 KeEA~~Eie~yr~qrE~efk--~ke~~~~G~~~~~~~~~e~~t~~ki~~lk~~ 87 (108)
T KOG1772|consen 37 KEEAEKEIEEYRSQREKEFK--EKESAASGSQGALEKRLEQETDDKIAGLKTS 87 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 36778889999999998875 4678888888899999999999988877544
No 249
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=27.85 E-value=4.3e+02 Score=30.78 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002103 721 EREVDKIALMKERAAIESEMEILSKLRREVEEQLESL 757 (966)
Q Consensus 721 ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L 757 (966)
++.+....+++.+..+..+.+.|.....++.++++++
T Consensus 372 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 372 EKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555555566666666655556666666666
No 250
>PLN02372 violaxanthin de-epoxidase
Probab=27.74 E-value=6.1e+02 Score=30.52 Aligned_cols=77 Identities=27% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHH--HHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhh
Q 002103 659 LQRIE--AESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEE--ARQELERLRAEREVDKIALMKERA 734 (966)
Q Consensus 659 L~RlE--AE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~ee--a~~eLe~~r~ere~e~~~llKerA 734 (966)
|.||| +|. ....+-+|+.+.+++=-..-++-+.+.+.++.. ...-|.+++.+-+.-.-+|.||
T Consensus 363 ~~~l~~~~e~-----------~e~~i~~e~~~~~~e~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~lske-- 429 (455)
T PLN02372 363 LERLEKDVEE-----------GEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKE-- 429 (455)
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH--
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002103 735 AIESEMEILSKLRREVEE 752 (966)
Q Consensus 735 a~e~e~q~L~~Lr~EVde 752 (966)
||++|..|+.|+.|
T Consensus 430 ----e~~~l~~~~~~~~~ 443 (455)
T PLN02372 430 ----EKELLEKLKMEASE 443 (455)
T ss_pred ----HHHHHHHHHHHHHH
No 251
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=27.68 E-value=7.9e+02 Score=28.48 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHH------------HHHHHHHhHHHHHHHHHHHHHH
Q 002103 748 REVEEQLESLMSNKVEISYEKERINMLRKEAENE------------NQEIARLQYELEVERKALSMAR 803 (966)
Q Consensus 748 ~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~------------~q~i~~~k~~LE~EkkAL~maR 803 (966)
+.|+.+||+ +.-++..+..+|+..+.-|..= .|++++.+..| |+||.-||
T Consensus 60 e~v~~rYqR---~y~ema~~L~~LeavLqRir~G~~LVekM~~YASDQEVLdMh~Fl---reAL~rLr 121 (324)
T PF12126_consen 60 EAVEARYQR---DYEEMAGQLGRLEAVLQRIRTGGALVEKMKLYASDQEVLDMHGFL---REALERLR 121 (324)
T ss_pred HHHHHHHHH---HHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHH---HHHHHHhh
Confidence 445555554 3334444555555444433321 35555555555 56766665
No 252
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=27.58 E-value=6.9e+02 Score=25.70 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=8.2
Q ss_pred eehhhHHHHHHHHHHHHHHH
Q 002103 762 VEISYEKERINMLRKEAENE 781 (966)
Q Consensus 762 vei~~Ek~~l~kL~~~~e~~ 781 (966)
+.+-.||.++..+...++.+
T Consensus 109 lD~n~eK~~~r~e~~~~~~k 128 (177)
T PF07798_consen 109 LDLNLEKGRIREEQAKQELK 128 (177)
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 253
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=26.69 E-value=1.1e+03 Score=27.91 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHHhhhcceehhhHHHHHH-H--------HHHHHHHHHHHHHH
Q 002103 724 VDKIALMKERAAIESEMEILSKL-------RREVEEQLESLMSNKVEISYEKERIN-M--------LRKEAENENQEIAR 787 (966)
Q Consensus 724 ~e~~~llKerAa~e~e~q~L~~L-------r~EVde~~q~L~s~kvei~~Ek~~l~-k--------L~~~~e~~~q~i~~ 787 (966)
+++--.++..+..+|..+.+-.- -+..--|-+.+--+-.++.-|+.|++ + +...++...+++++
T Consensus 52 ~~lqk~i~~~k~~~c~r~~~r~~~~~~~~~~q~~~~q~~~~~~~~~~v~~ek~rl~~~~i~~~iL~~~~~l~~~~Ealsk 131 (377)
T KOG2896|consen 52 LELQKSIRLKKDVECKRTELRVKILERLHVEQCLSAQVQSMRVEMKEVSEEKLRLQIECIQLKILVLESNLQRQIEALSK 131 (377)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Q 002103 788 LQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDR 826 (966)
Q Consensus 788 ~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~r 826 (966)
.++-+|-=+.+|...|.=.+-+--+-+-+-+-|.+++.+
T Consensus 132 ~~~~~~k~~~kL~~kr~q~~~~q~~l~k~~k~l~e~~~~ 170 (377)
T KOG2896|consen 132 KRAHLEKTKQKLEDKRQQFNASQVKLQKQLKSLIELRNE 170 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
No 254
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=26.40 E-value=4.5e+02 Score=31.18 Aligned_cols=45 Identities=27% Similarity=0.317 Sum_probs=33.3
Q ss_pred HHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002103 751 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVER 796 (966)
Q Consensus 751 de~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ek 796 (966)
++|++.|..-++-=.. +..++||++++....+++.+++..|..+.
T Consensus 398 ~~q~~~IL~m~L~~LT-~~e~~kL~~e~~~l~~ei~~l~~~l~~~~ 442 (445)
T smart00434 398 EEQADAILDMRLRRLT-KLEVEKLEKELKELEKEIEDLEKILASEL 442 (445)
T ss_pred HHHHHHHHHhHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 4577777666654333 56778999999999999999988887654
No 255
>PRK01156 chromosome segregation protein; Provisional
Probab=26.40 E-value=1.4e+03 Score=28.82 Aligned_cols=148 Identities=15% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002103 679 VAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLM 758 (966)
Q Consensus 679 ~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~ 758 (966)
+..+.++++ .-+.++..=..+...+++.+.+...+|++...+.+.....+-+-+.-++.-.+.+..|+.++.++ +...
T Consensus 589 l~e~~~~l~-~l~~~l~~le~~~~~~~~~~~~~~~~le~~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l-~~~~ 666 (895)
T PRK01156 589 SNEIKKQLN-DLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEI-DSII 666 (895)
T ss_pred HHHHHHHHH-HHHhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhh
Q ss_pred hcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHhhHHhh
Q 002103 759 SNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSM----ARAWAEDEAKRAREQAKALEGARDRWER 829 (966)
Q Consensus 759 s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m----aR~WaEdEA~r~~e~A~vLEea~~rW~~ 829 (966)
.+......+-.++..-...++.+.+.+..-...|+.+++.|.- ++.=.+ +.++..+.-+.++.+...|.+
T Consensus 667 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~-~~~~~~~~l~~~~~~~~~l~~ 740 (895)
T PRK01156 667 PDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRIN-DINETLESMKKIKKAIGDLKR 740 (895)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
No 256
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=26.12 E-value=3.7e+02 Score=28.26 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH--------------------HHHHHHHHHHH---HHHHHHHHHhhhhhHHHHH
Q 002103 683 EKEINESFEKELSMEREKIDVVEKMAE--------------------EARQELERLRA---EREVDKIALMKERAAIESE 739 (966)
Q Consensus 683 ~~di~~~f~~el~~Er~~~~~vEk~~e--------------------ea~~eLe~~r~---ere~e~~~llKerAa~e~e 739 (966)
+.|| -|=+.+..-|.-+..++.+-+ +.+.-|+.-++ +|-+++...|.-+|.---=
T Consensus 40 ~~dl--~~L~~I~~l~~~Gm~i~~i~~~~~~~l~~~~l~~~G~~t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvs 117 (175)
T PRK13182 40 EEDL--QLLEYVKSQIEEGQNMQDTQKPSSNDVEETQVNTIVQNISSVDFEQLEAQLNTITRRLDELERQLQQKADDVVS 117 (175)
T ss_pred HHHH--HHHHHHHHHHHcCCCHHHHHHHhhhhhhHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHhhhcceehhhHHHHH
Q 002103 740 MEILSKLRREVEEQLESLMSNKVEISYEKERI 771 (966)
Q Consensus 740 ~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l 771 (966)
-|||.| |.|+|||+++|-+--.-|..+.+..
T Consensus 118 Yqll~h-r~e~ee~~~~l~~le~~~~~~e~~~ 148 (175)
T PRK13182 118 YQLLQH-RREMEEMLERLQKLEARLKKLEPIY 148 (175)
T ss_pred HHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhc
No 257
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=26.05 E-value=9.4e+02 Score=30.49 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=43.5
Q ss_pred HHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHH
Q 002103 751 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAED 808 (966)
Q Consensus 751 de~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEd 808 (966)
++|.+.|+.-++.-.. +..++||++|++...+++.+++..|..|.+=+.+.+.+.++
T Consensus 410 ~~q~~~il~m~l~~lt-~~e~~kl~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ 466 (738)
T TIGR01061 410 ENQAEAIVSLRLYRLT-NTDIFELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEE 466 (738)
T ss_pred HHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566666655554444 34477999999999999999999999999888887776654
No 258
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=25.93 E-value=4.9e+02 Score=28.49 Aligned_cols=44 Identities=23% Similarity=0.457 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHhh
Q 002103 776 KEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWER 829 (966)
Q Consensus 776 ~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~rW~~ 829 (966)
+.++.++|.+.+-+..|-+||++..+ ..++++.-.|-+|..|++
T Consensus 55 ~~l~~eqQ~l~~er~~l~~er~~~~~----------~~~e~~~~~e~~r~~fek 98 (228)
T PRK06800 55 NQLRQEQQKLERERQQLLADREQFQE----------HVQQQMKEIEAARQQFQK 98 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444433 345566667777777765
No 259
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=25.86 E-value=6.8e+02 Score=25.04 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002103 721 EREVDKIALMKERAAIESEMEILSKLRREVEEQLESL 757 (966)
Q Consensus 721 ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L 757 (966)
.-.+|+..|+++-..+......+..|+.++.++-++.
T Consensus 48 ~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 48 ELREEIVKLMEENEELRALKKEVEELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566666666666777777777777665443
No 260
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=25.68 E-value=6e+02 Score=24.31 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=19.0
Q ss_pred hhhcccccchHHHHHhHHHHHHHHHH
Q 002103 850 WVNAGKQFSVDQTVSRAQSLVDKLKA 875 (966)
Q Consensus 850 w~~~~~~~~~~~~~~ra~~l~~klk~ 875 (966)
-..-|....||.++..|...+++-..
T Consensus 71 ~v~iG~g~~vE~~~~eA~~~l~~~~~ 96 (126)
T TIGR00293 71 LVSIGSGYYVEKDAEEAIEFLKKRIE 96 (126)
T ss_pred EEEcCCCEEEEecHHHHHHHHHHHHH
Confidence 34567888999999999777765433
No 261
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.52 E-value=1.4e+03 Score=28.58 Aligned_cols=196 Identities=16% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccee
Q 002103 684 KEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVE 763 (966)
Q Consensus 684 ~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kve 763 (966)
+++..|+.+.-..|+.....+.++...+.+-.+.= .+.-.-..+..+.+.|..+-.++-..|+.+.-+..+
T Consensus 9 ~~l~~F~~eRa~iE~~y~k~~~~l~~k~~~~~~~g---------s~~~~~~~~r~~~~~ma~~h~~l~~~l~~~i~~~~k 79 (611)
T KOG2398|consen 9 KELADFVRERASIEEDYAKRMGKLAAKAKSYTENG---------SFAESWLVMRTSTEAMAKSHLELSRELQDLIKDVAK 79 (611)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHhhccccCCCCc---------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHhhcCcEEEEcCCcccc
Q 002103 764 ISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREE 843 (966)
Q Consensus 764 i~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~ 843 (966)
|..++-+.+|-..+.......-.+.+.. .++.+....+ .++.+.+.+++-...++..+
T Consensus 80 ~~~~~~k~~k~~~~~~v~~~~~~q~~~~--~~~~~~~~~~--~~~~~~~~~e~e~~~~~~k~------------------ 137 (611)
T KOG2398|consen 80 YYAEQLKTRKKSKEEGVEKLKQDQSKKK--AKDTYEVLCA--KSNYLHRCQEKESLKEKEKR------------------ 137 (611)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHH--HHHHHHHHHH--HHHHHHHHHhhhhcccccch------------------
Q ss_pred ccccchhhhcccccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002103 844 SDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAE 915 (966)
Q Consensus 844 ~~~~~~w~~~~~~~~~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~ 915 (966)
----....+.+.+.-.+=..++++++.+.++.-.+-++.-.+|=+.....|+.||+-+........+
T Consensus 138 -----~~~~~k~~~~i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~~Ee~rl~~lk~~l~~~~~~is~ 204 (611)
T KOG2398|consen 138 -----KKELAKAELKIKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQEIEESRLSFLKEELWLFANQISE 204 (611)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 262
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.49 E-value=23 Score=35.17 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=13.4
Q ss_pred ccccchhhHHHHHhhhhHHhhhcccccCCCccccccc
Q 002103 96 GIVQAGVAGVVLFAGLTFAALSLSKRSTSRPREQMEP 132 (966)
Q Consensus 96 g~v~~gvagv~l~~gl~faa~s~sk~~~~~~~~~m~~ 132 (966)
|++.+-+||||+... |.++++ +|..+++...+.|
T Consensus 68 ~Ii~gv~aGvIg~Il--li~y~i-rR~~Kk~~~~~~p 101 (122)
T PF01102_consen 68 GIIFGVMAGVIGIIL--LISYCI-RRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHH-HHHS---------
T ss_pred ehhHHHHHHHHHHHH--HHHHHH-HHHhccCCCCCCC
Confidence 445555667666542 444555 5555556667777
No 263
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=24.96 E-value=1.5e+03 Score=28.66 Aligned_cols=136 Identities=24% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 002103 657 EELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAE-------REVDKIAL 729 (966)
Q Consensus 657 eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~e-------re~e~~~l 729 (966)
+++.+=.||.++.+ +|-+..--+++..=..++..++...+....+|..++.. +-.+..-.
T Consensus 174 ~~~~q~~~e~e~~L-------------~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~li 240 (629)
T KOG0963|consen 174 EKLEQEWAEREAGL-------------KDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLI 240 (629)
T ss_pred HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHH
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HhHH
Q 002103 730 MKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEK-ERINMLRKEAENENQEIARLQYELEVERKALSMAR-AWAE 807 (966)
Q Consensus 730 lKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek-~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR-~WaE 807 (966)
|.+ ++.-++.+.-|..||+..-+.|++-.-.....+ +.+..+-..+.++--.|.+|-.+++..+++|+-+| .|+.
T Consensus 241 m~e---Le~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~ 317 (629)
T KOG0963|consen 241 MTE---LEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKA 317 (629)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 002103 808 D 808 (966)
Q Consensus 808 d 808 (966)
.
T Consensus 318 q 318 (629)
T KOG0963|consen 318 Q 318 (629)
T ss_pred H
No 264
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=24.92 E-value=8.9e+02 Score=26.10 Aligned_cols=43 Identities=23% Similarity=0.402 Sum_probs=23.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHh
Q 002103 783 QEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWE 828 (966)
Q Consensus 783 q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~rW~ 828 (966)
+.+..+..++|..||-+ --.|.. ..++..+.-..|+.|..+|.
T Consensus 93 ~eL~~l~~~~e~~RK~~--ke~~~k-~~k~~~~a~~~leKAK~~Y~ 135 (234)
T cd07652 93 DELSSLAKTVEKSRKSI--KETGKR-AEKKVQDAEAAAEKAKARYD 135 (234)
T ss_pred HHHHHHHHHHHHHHHHH--HHhhHH-HHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666652 223332 23444555566777777765
No 265
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=24.91 E-value=9.1e+02 Score=27.89 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHH
Q 002103 777 EAENENQEIARLQYELEVERKALSMARAWAEDE 809 (966)
Q Consensus 777 ~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdE 809 (966)
.++..++.+...+++|-.++-+|+|.+.=++++
T Consensus 273 ~ldkg~~pL~~k~~el~~q~~~i~~~i~dl~~~ 305 (308)
T PF06717_consen 273 TLDKGQYPLNMKVSELNSQQSAISMKIRDLNDA 305 (308)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888889999999999999988766665
No 266
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.90 E-value=1.1e+03 Score=27.21 Aligned_cols=22 Identities=5% Similarity=0.077 Sum_probs=15.3
Q ss_pred ccchhhHHHHHHHHHHHHHhhH
Q 002103 649 GEASDAVNEELQRIEAESAAEN 670 (966)
Q Consensus 649 G~~~e~v~eEL~RlEAE~~a~~ 670 (966)
|--.+...+.|..+|+||.+.-
T Consensus 112 ~~d~~~te~~l~~y~~~n~~~I 133 (309)
T TIGR00570 112 NIDLENTKKKIETYQKENKDVI 133 (309)
T ss_pred CCcHHHHHHHHHHHHHHhHHHH
Confidence 3334557788999999985543
No 267
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=24.74 E-value=1.4e+03 Score=28.37 Aligned_cols=31 Identities=23% Similarity=0.090 Sum_probs=18.6
Q ss_pred hHHHHHhccceeccC--CccCCCCCccHHHHHH
Q 002103 456 QGQALSALQVLKVIE--ADVKPGDLCIRREYAR 486 (966)
Q Consensus 456 qieaLAaLgVLkIiE--g~F~PnepITRaEFAR 486 (966)
..+++-.||.-.-++ ....|+..=+|.=|.-
T Consensus 71 lA~~~k~lGy~~digyq~fLYp~e~~~R~ll~f 103 (594)
T PF05667_consen 71 LAQACKELGYRGDIGYQTFLYPNEKDLRRLLMF 103 (594)
T ss_pred HHHHHHHcCCCCCCcchhhccCChHHHHHHHHH
Confidence 355555666544333 5667888777776543
No 268
>PF05917 DUF874: Helicobacter pylori protein of unknown function (DUF874); InterPro: IPR008592 This family consists of several hypothetical proteins specific to Helicobacter pylori. The function of this family is unknown.
Probab=24.70 E-value=4.1e+02 Score=30.67 Aligned_cols=44 Identities=25% Similarity=0.248 Sum_probs=25.1
Q ss_pred HhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002103 756 SLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKAL 799 (966)
Q Consensus 756 ~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL 799 (966)
.+.-+|-....|+++..+-+-++|.+.|...+.|-.|--|-+-|
T Consensus 170 K~EQEKQKTeqEkQk~~ksqIklEQEkQKT~qeqqkliKeQKDf 213 (398)
T PF05917_consen 170 KVEQEKQKTEQEKQKENKSQIKLEQEKQKTEQEQQKLIKEQKDF 213 (398)
T ss_pred HHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445666666666666666666666666665555443
No 269
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=24.31 E-value=6.7e+02 Score=32.41 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhHHhhcCc
Q 002103 815 EQAKALEGARDRWERQGI 832 (966)
Q Consensus 815 e~A~vLEea~~rW~~~gi 832 (966)
.-..+.++.+.-|+.++-
T Consensus 202 q~~~~~d~l~~~~~~~~f 219 (835)
T COG3264 202 QLSAASDELRSLLHQQSF 219 (835)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 344556666666665554
No 270
>COG4877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.91 E-value=75 Score=28.69 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHhh
Q 002103 792 LEVERKALSMARAWAEDEAKRAREQAKAL-EGARD 825 (966)
Q Consensus 792 LE~EkkAL~maR~WaEdEA~r~~e~A~vL-Eea~~ 825 (966)
|.-|-+-+--++.|++||+|-..+|-+.| -|+.|
T Consensus 11 LRl~paiy~Aia~wA~de~RSiNaQIE~lL~E~lr 45 (63)
T COG4877 11 LRLEPAIYAAIAQWAEDEFRSINAQIEILLKEALR 45 (63)
T ss_pred eecCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33344556667999999999999998865 44443
No 271
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=23.87 E-value=9.6e+02 Score=26.07 Aligned_cols=51 Identities=31% Similarity=0.423 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhhcceehhhHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHH
Q 002103 745 KLRREVEEQLESLMSNKVEISYEKERINMLRKE----AENENQEIARLQYELEVERKALSMA 802 (966)
Q Consensus 745 ~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~----~e~~~q~i~~~k~~LE~EkkAL~ma 802 (966)
.||..+.++.++|.. +.+|.+.|..- ++.=+++|.++++..++|-.||+.-
T Consensus 115 ~Lkk~~~ey~~~l~~-------~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~ 169 (207)
T PF05010_consen 115 TLKKCIEEYEERLKK-------EEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQAS 169 (207)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 456666677666653 45777777654 4455778888888888888888653
No 272
>PRK10807 paraquat-inducible protein B; Provisional
Probab=23.85 E-value=5.2e+02 Score=31.38 Aligned_cols=78 Identities=13% Similarity=0.201 Sum_probs=43.0
Q ss_pred cchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhH-HHHHHhH
Q 002103 857 FSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSV-QELQQST 935 (966)
Q Consensus 857 ~~~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 935 (966)
..+++...++..+++|+..|. |+.++..+...+..+++-+.++.+.+.++...+.+.+...+ .++++..
T Consensus 413 s~l~~l~~~~~~il~kin~lp----------le~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL 482 (547)
T PRK10807 413 GGLAQIQQKLMEALDKINNLP----------LNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTL 482 (547)
T ss_pred CCHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHH
Confidence 345677777788888877775 44445555555555555555555555554444333333233 4555555
Q ss_pred HHHhhhhcc
Q 002103 936 AEFRSNLTE 944 (966)
Q Consensus 936 ~~~~~~~~~ 944 (966)
.++..++.+
T Consensus 483 ~~l~~~l~~ 491 (547)
T PRK10807 483 RELNRSMQG 491 (547)
T ss_pred HHHHHHHhh
Confidence 555544443
No 273
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=23.79 E-value=2.4e+03 Score=30.67 Aligned_cols=208 Identities=21% Similarity=0.290 Sum_probs=111.6
Q ss_pred hhHHHHHH----HHH-HHHHhhHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHhhHHHH---------HHHHHHHHHHH
Q 002103 653 DAVNEELQ----RIE-AESAAENAVSEH---SALVAEVEKEINESFEKELSMEREKIDVV---------EKMAEEARQEL 715 (966)
Q Consensus 653 e~v~eEL~----RlE-AE~~a~~av~~~---~~l~~~~~~di~~~f~~el~~Er~~~~~v---------Ek~~eea~~eL 715 (966)
+++..||+ +|+ .++..+.-+.+. .+.++..-+++++.|++=.+.=.+|+..+ -+.++.+..-|
T Consensus 1312 qAFeaELaank~~l~~i~~eG~~L~~ekpe~~~~V~~kl~~L~~~W~~Le~~t~~Kg~~L~qA~~q~~~~qs~~D~~~~l 1391 (2473)
T KOG0517|consen 1312 QAFEAELAANKEWLEKIEKEGQELVSEKPELKALVEKKLRELHKQWDELEKTTQEKGRKLFQANRQELLLQSLADAKKKL 1391 (2473)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44555554 344 344445555542 34444445799999997644445554432 12223333333
Q ss_pred HHHHHHHH-----HH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHH----HH
Q 002103 716 ERLRAERE-----VD---KIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENE----NQ 783 (966)
Q Consensus 716 e~~r~ere-----~e---~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~----~q 783 (966)
+.|...-. ++ -..|||...-||+||.+..+==.|+..|-..|+-+-- ..++|..-...++.+ .+
T Consensus 1392 ~~le~qL~S~D~G~DL~Svn~llkKqq~lEsem~~~~~kv~el~s~~~~ma~~~~----~a~~I~~~~~~v~~Rf~~L~~ 1467 (2473)
T KOG0517|consen 1392 DELESQLQSDDTGKDLTSVNDLLKKQQVLESEMEVRAQKVAELQSQAKAMAEEGH----SAENIEETTLAVLERFEDLLG 1467 (2473)
T ss_pred HHHHHHhcCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccCc----chhhHHHHHHHHHHHHHHHHh
Confidence 33332111 11 2478999999999999988888888888887776553 222332222222222 22
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHhhcCcEEEEcCCccccccccchhhhcccccchHHHH
Q 002103 784 EIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTV 863 (966)
Q Consensus 784 ~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w~~~~~~~~~~~~~ 863 (966)
=+.+-+-.|++=|+..+..|. ++||--=+.|| +..+..++.-..+
T Consensus 1468 Pl~~R~~~Le~S~e~hQf~~d-vddE~~WV~Er----------------------------------lP~A~s~d~G~~L 1512 (2473)
T KOG0517|consen 1468 PLQERRKQLEASKELHQFVRD-VDDELLWVAER----------------------------------LPLASSTDYGENL 1512 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHhh----------------------------------CccCCchhhccCh
Confidence 223334445554444444442 22222111111 1234556667788
Q ss_pred HhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHH
Q 002103 864 SRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFIS 900 (966)
Q Consensus 864 ~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~ 900 (966)
+-|++|+.|-+.+.+.|++-- --|+.|...=+.||+
T Consensus 1513 ~~~q~l~KK~q~Lq~EI~~H~-prI~~vl~~gq~Li~ 1548 (2473)
T KOG0517|consen 1513 QTVQSLHKKNQTLQAEIKGHQ-PRINDVLERGQSLID 1548 (2473)
T ss_pred HHHHHHHHHhHHHHHHHHhcc-hHHHHHHHHhHHHHh
Confidence 899999999999999998432 224445544444553
No 274
>PF04624 Dec-1: Dec-1 repeat; InterPro: IPR006718 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This repeat is usually found in 12 copies in the central region of the protein. Its function is unknown. Length polymorphisms of Dec-1 have been observed in wild-type strains, and are caused by changes in the numbers of the first five repeats [].; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=23.77 E-value=82 Score=24.54 Aligned_cols=14 Identities=43% Similarity=0.833 Sum_probs=12.1
Q ss_pred HHhHHHHHHHHHHH
Q 002103 803 RAWAEDEAKRAREQ 816 (966)
Q Consensus 803 R~WaEdEA~r~~e~ 816 (966)
|-|.||.||--+++
T Consensus 9 RQwsEeqAk~qq~q 22 (27)
T PF04624_consen 9 RQWSEEQAKIQQAQ 22 (27)
T ss_pred HHhhHHHHHHHHHH
Confidence 99999999977664
No 275
>PRK05560 DNA gyrase subunit A; Validated
Probab=23.48 E-value=1.2e+03 Score=29.83 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=38.3
Q ss_pred HHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002103 751 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARA 804 (966)
Q Consensus 751 de~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~ 804 (966)
++|.+.|..-++--.. +..++||++|++..++++.+++..|..+++-..++..
T Consensus 413 ~~qa~~IL~m~L~~LT-~~e~~kL~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~ 465 (805)
T PRK05560 413 EIQAQAILDMRLQRLT-GLERDKIEDEYKELLALIADLKDILASPERLLEIIKE 465 (805)
T ss_pred HHHHHHHHHhHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4466666655554433 3347899999999999999999999998876666543
No 276
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=23.46 E-value=1.2e+03 Score=27.09 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002103 777 EAENENQEIARLQYELEVERKALSMAR 803 (966)
Q Consensus 777 ~~e~~~q~i~~~k~~LE~EkkAL~maR 803 (966)
.+-....++.+++.+.++-++.+.++-
T Consensus 349 ~~~~~~~el~~L~Re~~~~~~~Y~~l~ 375 (498)
T TIGR03007 349 TIPEVEAELTQLNRDYEVNKSNYEQLL 375 (498)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777777777777766654
No 277
>PHA02940 hypothetical protein; Provisional
Probab=23.44 E-value=4e+02 Score=30.23 Aligned_cols=88 Identities=23% Similarity=0.292 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002103 743 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEG 822 (966)
Q Consensus 743 L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEe 822 (966)
|..||+.+-|-...|.--|.-|---.=....|+++++-=+++|.+.-+.--.=|+|+.+.-+-.++---.++|++++|--
T Consensus 9 lieL~eKI~eyIkDLedlk~dyd~~dfdaddLraeLeyI~kEi~~~~~~~ksVkeaielt~siL~~yy~~a~e~~k~Ls~ 88 (315)
T PHA02940 9 LIELKEKIGEYIKDLEDLKLDYDINDFDADDLRAELEYIQKEIVESYSITKSVKEAIELTYSILTDYYNDAKEKSKLLSD 88 (315)
T ss_pred hHHHHHHHHHHHHhHHHhhccCCCCcCchhhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 55688888888888887777776444456788999999899988887777778888888888888888899999999987
Q ss_pred HhhHHhhcCcE
Q 002103 823 ARDRWERQGIK 833 (966)
Q Consensus 823 a~~rW~~~gik 833 (966)
| +.++||+
T Consensus 89 A---y~kN~i~ 96 (315)
T PHA02940 89 A---YNKNAIK 96 (315)
T ss_pred H---HhhccHH
Confidence 6 4556665
No 278
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=23.22 E-value=1.8e+03 Score=29.13 Aligned_cols=72 Identities=28% Similarity=0.254 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH-------HH--HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHH
Q 002103 686 INESFEKELSMEREKIDVVEKMAEE-------AR--QELERLRAEREVDKIALMKERAAIESEMEILSK-LRREVEEQLE 755 (966)
Q Consensus 686 i~~~f~~el~~Er~~~~~vEk~~ee-------a~--~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~-Lr~EVde~~q 755 (966)
+-+--+.||..|+...-+||.-+.+ || .|+|.+-++.--++.++-|+--||-.|+|.|.. ++.|-+.+++
T Consensus 962 LhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~ 1041 (1424)
T KOG4572|consen 962 LHAEIDAELEKEFAELIELEQKALECKEDEAFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELI 1041 (1424)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 3344455555555444444333222 22 244555555556666777777777777766644 3455555555
Q ss_pred Hh
Q 002103 756 SL 757 (966)
Q Consensus 756 ~L 757 (966)
-+
T Consensus 1042 e~ 1043 (1424)
T KOG4572|consen 1042 ED 1043 (1424)
T ss_pred HH
Confidence 44
No 279
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=23.08 E-value=6.4e+02 Score=23.78 Aligned_cols=45 Identities=29% Similarity=0.290 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002103 681 EVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDK 726 (966)
Q Consensus 681 ~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~ 726 (966)
.+++-+..+|.+.+..|=+.+.. |+.+.+.+.||+++-.+....+
T Consensus 6 ~~~~Q~~~~l~~~~~~Ef~~I~~-Er~v~~kLneLd~Li~eA~~r~ 50 (109)
T PF03980_consen 6 SVHQQMIEFLEENCKKEFEEILE-ERDVVEKLNELDKLIEEAKERK 50 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHhH
Confidence 33444555555555555433332 4455556666766665544433
No 280
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=23.06 E-value=7.7e+02 Score=24.69 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcceeh
Q 002103 738 SEMEILSKLRREVEEQLESLMSNKVEI 764 (966)
Q Consensus 738 ~e~q~L~~Lr~EVde~~q~L~s~kvei 764 (966)
+..+-+..|+.+|+|.+..|-.+|+-.
T Consensus 55 s~~qr~~eLqaki~ea~~~le~eK~ak 81 (107)
T PF09304_consen 55 SRNQRIAELQAKIDEARRNLEDEKQAK 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666665554433
No 281
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=23.03 E-value=1.1e+03 Score=26.98 Aligned_cols=70 Identities=21% Similarity=0.183 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHH
Q 002103 690 FEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKE 769 (966)
Q Consensus 690 f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~ 769 (966)
|+=.+..+=....-|.|-++.|+.|+.++ +|+ ++|-.+++.+..+|..-=.-+|+|--.-.....||+
T Consensus 124 FDFd~EV~PiLeVLVgKtlEQAl~EV~EE-----eEL-------~~lr~~q~~fe~~R~aEl~e~qrlE~~e~r~~eEke 191 (291)
T PF06098_consen 124 FDFDEEVKPILEVLVGKTLEQALMEVMEE-----EEL-------AALRRQQRAFEELRNAELAEVQRLEEAEKRRREEKE 191 (291)
T ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHH-----HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555666788888888777654 333 344444455555554333333444333333334444
Q ss_pred HH
Q 002103 770 RI 771 (966)
Q Consensus 770 ~l 771 (966)
|.
T Consensus 192 rR 193 (291)
T PF06098_consen 192 RR 193 (291)
T ss_pred HH
Confidence 43
No 282
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=22.99 E-value=6.7e+02 Score=26.10 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=33.3
Q ss_pred cccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Q 002103 855 KQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLF 898 (966)
Q Consensus 855 ~~~~~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~ 898 (966)
=+..|+++.+..+.|+.|-+.++.||+||.- -|+.+..-|..+
T Consensus 43 l~~qv~gi~~eT~~Ll~K~N~L~eDvq~Kv~-tld~vf~aV~dl 85 (139)
T COG4768 43 LTSQVDGITHETEELLHKTNTLAEDVQGKVA-TLDPVFDAVKDL 85 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-hHhHHHHHHHHH
Confidence 3467899999999999999999999999974 455555544443
No 283
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=22.79 E-value=28 Score=42.43 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhh
Q 002103 654 AVNEELQRIEAESAAE 669 (966)
Q Consensus 654 ~v~eEL~RlEAE~~a~ 669 (966)
.+.+.|.|||.||-.-
T Consensus 456 ~l~erl~rLe~ENk~L 471 (713)
T PF05622_consen 456 ELRERLLRLEHENKRL 471 (713)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678899999998554
No 284
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.69 E-value=5.3e+02 Score=31.28 Aligned_cols=75 Identities=23% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002103 655 VNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERA 734 (966)
Q Consensus 655 v~eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerA 734 (966)
++.||+.|+++|-..++...+ |..+ +.+|...-...+..|| .++.+++.
T Consensus 71 ~r~~~~~l~~~N~~l~~eN~~--L~~r-~~~id~~i~~av~~~~----------------------------~~~~~~~~ 119 (472)
T TIGR03752 71 LRKRLAKLISENEALKAENER--LQKR-EQSIDQQIQQAVQSET----------------------------QELTKEIE 119 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHh-hhhHHHHHHHHHHhhh----------------------------HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002103 735 AIESEMEILSKLRREVEEQLESLMSN 760 (966)
Q Consensus 735 a~e~e~q~L~~Lr~EVde~~q~L~s~ 760 (966)
.+..|.+-|..+-..+..+|+.+...
T Consensus 120 ql~~~~~~~~~~l~~l~~~l~~~~~~ 145 (472)
T TIGR03752 120 QLKSERQQLQGLIDQLQRRLAGVLTG 145 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
No 285
>PRK14011 prefoldin subunit alpha; Provisional
Probab=22.62 E-value=8.5e+02 Score=25.01 Aligned_cols=127 Identities=17% Similarity=0.187 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHhhcCcEEEEcCCccccc---c
Q 002103 769 ERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREES---D 845 (966)
Q Consensus 769 ~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~---~ 845 (966)
+.|+.+.-.++.=++.+..++..|.. |.++++=. +++. ++|+. -+...-|-|-+-.++-=.+ .
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~----L~~a~~e~-~~~i------e~L~~---l~~~~eiLVPLg~s~yV~g~i~d 68 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSS----IDMMKMEL-LKSI------ESMEG---LKTSEEILIPLGPGAFLKAKIVD 68 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-HHHH------HHHHc---cCCCCeEEEEcCCCcEEeEEecC
Confidence 35667777777777777766665554 55555433 2222 34442 2333334443333332222 1
Q ss_pred ccchhhhcccccchHHHHHhHHHHHH-HHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002103 846 AAVMWVNAGKQFSVDQTVSRAQSLVD-KLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKAS 910 (966)
Q Consensus 846 ~~~~w~~~~~~~~~~~~~~ra~~l~~-klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~ 910 (966)
+.---..-|.-..||+++..|...++ |.+.|-. -..+.-++|..+-+.+..+-..|..++.++.
T Consensus 69 ~dkVlVdIGtGy~VEk~~~eA~~~~~~ri~~l~~-~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~ 133 (144)
T PRK14011 69 PDKAILGVGSDIYLEKDVSEVIEDFKKSVEELDK-TKKEGNKKIEELNKEITKLRKELEKRAQAIE 133 (144)
T ss_pred CCeEEEEccCCeEEEecHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33346678888999999999965555 4444432 2223333333333344444444444444443
No 286
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=22.59 E-value=5.9e+02 Score=24.50 Aligned_cols=30 Identities=30% Similarity=0.600 Sum_probs=17.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHH------------HhHHHHHHH
Q 002103 783 QEIARLQYELEVERKALSMAR------------AWAEDEAKR 812 (966)
Q Consensus 783 q~i~~~k~~LE~EkkAL~maR------------~WaEdEA~r 812 (966)
+.+..++.+|+.+|.=.++++ .||+|++=+
T Consensus 58 ~~l~~~~~~lk~~r~~~~v~k~v~q~lI~gSgVdWa~D~~L~ 99 (106)
T PF05837_consen 58 EKLEKLEKELKKSRQRWRVMKNVFQALIVGSGVDWAEDPKLR 99 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCHHHH
Confidence 344445555555555555554 799998754
No 287
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=22.45 E-value=9.5e+02 Score=25.54 Aligned_cols=59 Identities=25% Similarity=0.309 Sum_probs=30.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 002103 692 KELSMEREKIDVVEKMAEEARQELERLRA---EREVDKIALMKERAAIESEMEILSKLRREV 750 (966)
Q Consensus 692 ~el~~Er~~~~~vEk~~eea~~eLe~~r~---ere~e~~~llKerAa~e~e~q~L~~Lr~EV 750 (966)
++|..=|.+....+|...++..|-.+++. .-+++...|-|.-+-.+..+..|.+++.-+
T Consensus 34 eei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl 95 (201)
T PF13851_consen 34 EEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARL 95 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666666666666666555554 233444444444444555555555555444
No 288
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=22.36 E-value=3.5e+02 Score=32.96 Aligned_cols=114 Identities=30% Similarity=0.427 Sum_probs=0.0
Q ss_pred HHHHHHH----HHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Q 002103 659 LQRIEAE----SAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEA---RQELERLRAEREVDKIALMK 731 (966)
Q Consensus 659 L~RlEAE----~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea---~~eLe~~r~ere~e~~~llK 731 (966)
|.+||+| +.+-.|..-| .|+|+=-|++.-+.--.+-.....++|+.+=.- ..||.+++.+-++-+..+-|
T Consensus 66 lr~leeEqerL~ssLlaLsSH---FAqVQfRirQ~vea~p~er~~LLrdLedFAF~Gcpd~~~lq~~~s~~~~~~~~lek 142 (621)
T KOG3759|consen 66 LRQLEEEQERLNSSLLALSSH---FAQVQFRIRQMVEADPSERLKLLRDLEDFAFKGCPDMNELQRLRSESESGNDVLEK 142 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCcccccccccccccccchhhhh
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhccee------hhhHHHH--HHHHHHHHH
Q 002103 732 ERAAIESEMEILSKLRREVEEQLESLMSNKVE------ISYEKER--INMLRKEAE 779 (966)
Q Consensus 732 erAa~e~e~q~L~~Lr~EVde~~q~L~s~kve------i~~Ek~~--l~kL~~~~e 779 (966)
.+ |.|+|++..||+.+++ |++.|-+.=+ +.-||++ |.+|+++++
T Consensus 143 q~---e~qkeLi~QLk~Ql~d-LE~~AYe~Geg~LPq~viLekQk~ilDeLr~Kl~ 194 (621)
T KOG3759|consen 143 QN---ERQKELIKQLKEQLED-LERTAYENGEGELPQTVILEKQKAILDELREKLE 194 (621)
T ss_pred hc---chHHHHHHHHHHHHHH-HHHHHHhcCCCcCchHHHHHHHHHHHHHHHHHhh
No 289
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=22.34 E-value=1e+02 Score=28.53 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHhhH
Q 002103 794 VERKALSMARAWAEDEA---KRAREQAKALEGARDR 826 (966)
Q Consensus 794 ~EkkAL~maR~WaEdEA---~r~~e~A~vLEea~~r 826 (966)
....++.||+.|.+.+. ..+..-.++|.+++++
T Consensus 41 l~eq~~~mL~~W~~~~~~~~atv~~L~~AL~~~gr~ 76 (86)
T cd08779 41 LDEQIFDMLFSWAQRQAGDPDAVGKLVTALEESGRQ 76 (86)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCHH
Confidence 45678999999999882 3456677777777654
No 290
>PTZ00421 coronin; Provisional
Probab=22.12 E-value=1.3e+02 Score=35.53 Aligned_cols=33 Identities=21% Similarity=0.428 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002103 768 KERINMLRKEAENENQEIARLQYELEVERKALSM 801 (966)
Q Consensus 768 k~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m 801 (966)
+.+|+.|..++...|++|.+++-.|+ ||+++.|
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 484 (493)
T PTZ00421 452 LGRLQALSEKLRTQHEEIKRCREALQ-KKESIVM 484 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 35677888888888888888888876 6677665
No 291
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=22.11 E-value=4.2e+02 Score=24.05 Aligned_cols=55 Identities=22% Similarity=0.324 Sum_probs=39.1
Q ss_pred HHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHH------------HHHHHHHhhHHHHHHH
Q 002103 862 TVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNL------------KKWASKASMRAAELKD 918 (966)
Q Consensus 862 ~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l------------~~~~~~~~~~~~~~~~ 918 (966)
++++|..|+.+. +..|-.|...+.+...++-|..|+-.+ |+++.+...|+..|+.
T Consensus 2 ~l~~Ai~lv~~A--v~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RAE~LK~ 68 (75)
T cd02684 2 SLEKAIALVVQA--VKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRAEELKA 68 (75)
T ss_pred cHHHHHHHHHHH--HHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888766 778888999999998888888887655 4445555555544443
No 292
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=21.92 E-value=3.4e+02 Score=29.04 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=28.8
Q ss_pred CccCCCCCCcHHHHHHHH--HhccchhhHHHHHHHHHHHHHhhH
Q 002103 629 RLFQPDKPVTNAQAAVAL--AIGEASDAVNEELQRIEAESAAEN 670 (966)
Q Consensus 629 ~~FQPnKPVTRAEAAAaL--~~G~~~e~v~eEL~RlEAE~~a~~ 670 (966)
-.|--.+|+|--|.+=+| ++++|+-++. .|+..+++++
T Consensus 34 ilyls~~Pmtl~Ei~E~lg~Sks~vS~~lk----kL~~~~lV~~ 73 (177)
T COG1510 34 ILYLSRKPLTLDEIAEALGMSKSNVSMGLK----KLQDWNLVKK 73 (177)
T ss_pred hheecCCCccHHHHHHHHCCCcchHHHHHH----HHHhcchHHh
Confidence 368889999999998887 4778777765 4777775554
No 293
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=21.90 E-value=1.8e+03 Score=28.48 Aligned_cols=174 Identities=21% Similarity=0.275 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002103 710 EARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQ 789 (966)
Q Consensus 710 ea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k 789 (966)
....||++....+++++..|.. +-.+.|..|++.+.+.=+.|-+--....-|...|...+.+.+.=.+.++..+
T Consensus 137 ~~q~ELee~q~~Hqeql~~Lt~------aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~ 210 (739)
T PF07111_consen 137 GSQRELEEAQRLHQEQLSSLTQ------AHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQ 210 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3456788888888877776653 3345678888888777777766666667778888888888888888899999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH-H------HHHHHHHHHHHhhHHhhcCcEEEEcCCccccccccchhhhcccccchHHH
Q 002103 790 YELEVERKALSMARAWAEDEAK-R------AREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQT 862 (966)
Q Consensus 790 ~~LE~EkkAL~maR~WaEdEA~-r------~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w~~~~~~~~~~~~ 862 (966)
-+||+.--=+.-+|.+|=+-.= . .+||-+.++-+ .+-+ ||-. +=+..++=.
T Consensus 211 ~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tV-q~L~-------------edR~--------~L~~T~ELL 268 (739)
T PF07111_consen 211 EELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETV-QHLQ-------------EDRD--------ALQATAELL 268 (739)
T ss_pred HHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHH-HHHH-------------HHHH--------HHHHHHHHH
Confidence 9999988888888988854431 1 23444444332 2221 1110 011122222
Q ss_pred HHhHHHHHHHHH----Hhhhhcc----------cchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002103 863 VSRAQSLVDKLK----AMANDVS----------GKSKEIINTIIHKILLFISNLKKWASKASM 911 (966)
Q Consensus 863 ~~ra~~l~~klk----~m~~~~~----------~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~ 911 (966)
--|-++|.+-|- .++.++. -|...+|++-=+|+..|.=.||.+=-+...
T Consensus 269 qVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQeleh~~ 331 (739)
T PF07111_consen 269 QVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQELEHRD 331 (739)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Confidence 336666666553 3444442 566788888888888888777655433333
No 294
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=21.90 E-value=1e+03 Score=25.69 Aligned_cols=30 Identities=27% Similarity=0.327 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHH
Q 002103 678 LVAEVEKEINESFEKELSMEREKID-VVEKMA 708 (966)
Q Consensus 678 l~~~~~~di~~~f~~el~~Er~~~~-~vEk~~ 708 (966)
|..++.+.|. .|-+++..+|.... .++|..
T Consensus 85 L~~ev~~~l~-~~~~~~~k~rK~~~~~~~k~q 115 (239)
T cd07658 85 LTEEAIKPLR-QVLDEQHKTRKPVENEVDKAA 115 (239)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 5555666774 66667776755443 344443
No 295
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=21.87 E-value=1.4e+03 Score=27.44 Aligned_cols=112 Identities=23% Similarity=0.236 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcce-----ehhhHHHHHHHHHHH
Q 002103 703 VVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKV-----EISYEKERINMLRKE 777 (966)
Q Consensus 703 ~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kv-----ei~~Ek~~l~kL~~~ 777 (966)
..+.-......+.+++..+.-+++...+++-.. .--+=|...+.++++-++.....+. +.....+.|.+++..
T Consensus 95 ~l~~~~~ql~~~~~~~~~~i~e~~~~~~~el~~--~~~~~Ll~~~~~~~e~f~e~l~~~~~~s~~~~~~~~~~i~~~lg~ 172 (448)
T COG1322 95 LLIESLAQLSSEFQELANEIFEELNRRLAELNQ--QNLKQLLKPLREVLEKFREQLEQRIHESAEERSTLLEEIDRLLGE 172 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444443321 1112233444555554444443332 344455667777777
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Q 002103 778 AENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDR 826 (966)
Q Consensus 778 ~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~r 826 (966)
+..-.+++..|+..|-- +|. .=.|-|=- -.+|||.++=+
T Consensus 173 ~~~la~e~~~Lt~~Lk~-~kt---rG~wGEv~------Le~ILe~~gl~ 211 (448)
T COG1322 173 IQQLAQEAGNLTAALKG-NKT---RGNWGEVQ------LERILEDSGLR 211 (448)
T ss_pred HHHHHHHHHHHHHHHcC-CCc---cccHHHHH------HHHHHHHhCch
Confidence 77777777777766544 211 12465532 34567766544
No 296
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=21.83 E-value=1.5e+03 Score=27.49 Aligned_cols=88 Identities=16% Similarity=0.285 Sum_probs=51.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHH
Q 002103 698 REKIDVVEKMAEEARQELERLRA---EREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINML 774 (966)
Q Consensus 698 r~~~~~vEk~~eea~~eLe~~r~---ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL 774 (966)
|++..+.-+.+..|.+||.++.. +-..++..|--+|+-++.|+|-|..=++++..--.-|-++..+...+..+++.-
T Consensus 122 ~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~ 201 (499)
T COG4372 122 RQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQE 201 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777777777765 233456677788889999999888877776633333334444444444444333
Q ss_pred HHHHHHHHHHH
Q 002103 775 RKEAENENQEI 785 (966)
Q Consensus 775 ~~~~e~~~q~i 785 (966)
-..+....+++
T Consensus 202 ~~~la~r~~a~ 212 (499)
T COG4372 202 AQNLATRANAA 212 (499)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 297
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=21.60 E-value=1.3e+03 Score=26.66 Aligned_cols=93 Identities=26% Similarity=0.249 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehh
Q 002103 686 INESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEIS 765 (966)
Q Consensus 686 i~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~ 765 (966)
.++|-+-+=++=|.|...+++.++++.+.-..+=.++.+ -++.++ ++|-+|-+.+..+..++|+.-
T Consensus 29 ~~~f~elkeq~yk~kLa~Lq~~Leel~~g~~~eYl~~~~----------~L~~~~----kerl~~aely~e~~~e~v~~e 94 (291)
T KOG4466|consen 29 EKQFSELKEQMYKDKLAQLQAQLEELGQGTAPEYLKRVK----------KLDESR----KERLRVAELYREYCVERVERE 94 (291)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH----------HHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 334444333333555555555555544443333333333 344443 346678888999999999988
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHhHHHH
Q 002103 766 YEKERINMLRKEAENENQEIA-RLQYELE 793 (966)
Q Consensus 766 ~Ek~~l~kL~~~~e~~~q~i~-~~k~~LE 793 (966)
||.+ ++.-.++.|.+...+- .|+++||
T Consensus 95 Ye~E-~~aAk~e~E~~~~lLke~l~sele 122 (291)
T KOG4466|consen 95 YECE-IKAAKKEYESKKKLLKENLISELE 122 (291)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8865 4455555555443332 3444444
No 298
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=21.45 E-value=2.8e+02 Score=30.12 Aligned_cols=60 Identities=23% Similarity=0.370 Sum_probs=37.0
Q ss_pred CCCCCcHHHHHHHHH-hccchhhHHHHHHHHHHHHHh-hHHHHh---h-HHH--------HHHHHHHHHHHHHH
Q 002103 633 PDKPVTNAQAAVALA-IGEASDAVNEELQRIEAESAA-ENAVSE---H-SAL--------VAEVEKEINESFEK 692 (966)
Q Consensus 633 PnKPVTRAEAAAaL~-~G~~~e~v~eEL~RlEAE~~a-~~av~~---~-~~l--------~~~~~~di~~~f~~ 692 (966)
|..+---+-++.... +-...|.++.||+++|.|-.- |+..+| | ++| +-++.+||+++|-+
T Consensus 26 ~~~~~~a~s~s~~~~LSe~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLGlt~~~EL~qnisksw~d 99 (208)
T KOG4010|consen 26 PVGTDVAASASEFEALSEEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLGLTVLKELKQNISKSWKD 99 (208)
T ss_pred CCccchhhhhhHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhh
Confidence 344433333333333 667788999999999988544 444444 2 333 33457899999973
No 299
>PRK10132 hypothetical protein; Provisional
Probab=21.27 E-value=4.6e+02 Score=25.74 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhhhhhhhhhH
Q 002103 888 INTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGV 957 (966)
Q Consensus 888 ~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~~~c~~gv 957 (966)
++.+..-|+.|+.-+.+..........+=-+.+..++...+..++....+... +.+.+|..++-+++=|
T Consensus 14 ~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~-~~~~~~~a~~~~~~~V 82 (108)
T PRK10132 14 VQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTR-VQQAARDAVGCADTFV 82 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHH
No 300
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=21.24 E-value=6.4e+02 Score=29.84 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=7.0
Q ss_pred HHHhhHHHHHHHHHHH
Q 002103 671 AVSEHSALVAEVEKEI 686 (966)
Q Consensus 671 av~~~~~l~~~~~~di 686 (966)
|.+-..+.+.+.+||.
T Consensus 290 AeAyr~~~i~~AeGda 305 (419)
T PRK10930 290 ARAYKAQTILEAQGEV 305 (419)
T ss_pred HHHHHHHHHHHhhhhH
Confidence 3333344444445554
No 301
>PRK10780 periplasmic chaperone; Provisional
Probab=21.24 E-value=8.7e+02 Score=24.62 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002103 703 VVEKMAEEARQELERLRAEREVDKIALMKERA 734 (966)
Q Consensus 703 ~vEk~~eea~~eLe~~r~ere~e~~~llKerA 734 (966)
.+|+.+.....||+.+..+-.+....|-++.+
T Consensus 47 ~le~~~~~~q~el~~~~~elq~~~~~~q~~~~ 78 (165)
T PRK10780 47 QLENEFKGRASELQRMETDLQAKMQKLQRDGS 78 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45666666666666666665555555555433
No 302
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=21.18 E-value=3.3e+02 Score=33.96 Aligned_cols=62 Identities=23% Similarity=0.254 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHhhcCcEEEEcCC
Q 002103 768 KERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKD 839 (966)
Q Consensus 768 k~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~ 839 (966)
+-+-|+|++|++.-++.+.++|-.++.++--|..|.--+|. |. +.++|++. ++.-|+...-.
T Consensus 99 e~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieq-aq------~~~~El~~---~n~pkl~LP~s 160 (907)
T KOG2264|consen 99 EVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQ-AQ------RQLEELRE---TNNPKLFLPFS 160 (907)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH-HH------HHHHHHHh---hcCCceeeccc
Confidence 44668899999999999999999988888777777654442 22 23555554 34445544433
No 303
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=21.14 E-value=1.6e+03 Score=27.69 Aligned_cols=108 Identities=23% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhH
Q 002103 691 EKELSMEREKIDVVEKMAEEARQELERLRA---EREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYE 767 (966)
Q Consensus 691 ~~el~~Er~~~~~vEk~~eea~~eLe~~r~---ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~E 767 (966)
+++-+.|+.+..--+++.+.--.+|++.+. ...+.-..-.++---+|.-.+-+.++-.+=...|++|+ ++=.--+
T Consensus 97 E~e~k~d~v~~khn~~I~~k~g~~L~~v~~~~~~~~~~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~--~AL~kE~ 174 (508)
T PF00901_consen 97 EDEQKEDEVREKHNKKIIEKFGNDLEKVYKFMKGQEKVEEEEENQIEILEKALKSYGKIVKEENKQLDRLA--RALQKES 174 (508)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002103 768 KERINMLRKEAENENQEIARLQYELEVERKALS 800 (966)
Q Consensus 768 k~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ 800 (966)
..|=+.=.+-++.=.+.+.-|+.-+|+||+||.
T Consensus 175 ~~Rt~dE~~mv~~yr~ki~aL~~aIe~Er~~m~ 207 (508)
T PF00901_consen 175 RERTQDERKMVEEYRQKIDALKNAIEVEREGMQ 207 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
No 304
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=20.92 E-value=9.9e+02 Score=25.14 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=20.6
Q ss_pred HHHhhHHhhcCcEEEEcCCccccccccchhhhcccccchHHHH
Q 002103 821 EGARDRWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTV 863 (966)
Q Consensus 821 Eea~~rW~~~gikv~vd~~~~~~~~~~~~w~~~~~~~~~~~~~ 863 (966)
++.+.+- +.||+|..+.+ ..+|+.-....+...++-|.
T Consensus 139 ~~~~~~l-~~gi~i~~~~~----~~gG~iv~~~dg~i~id~T~ 176 (198)
T PRK01558 139 AALGNKL-KKGIELKPFKG----ISKGFKIQQKDGSLYYDFSA 176 (198)
T ss_pred HHHHHHh-cCCeEEcccCC----cccceEEEEcCCCeEEeCcH
Confidence 3444444 36877766533 34666666555555555443
No 305
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=20.77 E-value=1.5e+02 Score=28.79 Aligned_cols=15 Identities=40% Similarity=0.583 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q 002103 738 SEMEILSKLRREVEE 752 (966)
Q Consensus 738 ~e~q~L~~Lr~EVde 752 (966)
.|++-|.+||..+++
T Consensus 69 ~EkEqL~~Lk~kl~~ 83 (100)
T PF04568_consen 69 KEKEQLKKLKEKLKE 83 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666665544
No 306
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=20.70 E-value=5.5e+02 Score=24.29 Aligned_cols=56 Identities=27% Similarity=0.280 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 002103 769 ERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARD 825 (966)
Q Consensus 769 ~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~ 825 (966)
..|.+|.+.++.+.+..... .+||.|...|.--|+=...|=-++..|+.-||++-+
T Consensus 15 ~aid~LE~~v~~r~~~~~~~-~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~ 70 (89)
T PF13747_consen 15 AAIDRLEKAVDRRLERDRKR-DELEEEIQRLDADRSRLAQELDQAEARANRLEEANR 70 (89)
T ss_pred HHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 35677777777777654444 888899888888888888888888888888887654
No 307
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=20.68 E-value=9.1e+02 Score=24.61 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhh----hcceehhhHHHHHHHHHHHHH
Q 002103 742 ILSKLRREVEEQLESLM----SNKVEISYEKERINMLRKEAE 779 (966)
Q Consensus 742 ~L~~Lr~EVde~~q~L~----s~kvei~~Ek~~l~kL~~~~e 779 (966)
.+..||.+|.++.-.++ ..++.-...+.-+++..++++
T Consensus 130 a~~~l~~~i~~lA~~~a~kil~~~l~~~~~~~li~~~i~~l~ 171 (175)
T PRK14472 130 ALDVLRNEVADLAVKGAEKIIRTSLDADKQKKVVDSMIQDLS 171 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhh
Confidence 45567777766544433 334433444444555555544
No 308
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=20.67 E-value=9.6e+02 Score=28.73 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=34.0
Q ss_pred HHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHH
Q 002103 751 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAED 808 (966)
Q Consensus 751 de~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEd 808 (966)
++|++.|..-++--.+ +..++||+++++...+++..++.. +...-|.+|
T Consensus 385 ~~q~~~lL~m~L~~LT-~~e~~kL~~e~~~l~~ei~~l~~~--------t~~~~w~~D 433 (439)
T PHA02592 385 GEYADKLVAMNIYSMT-SDEREKLQKEAEELEKEHEYWKKT--------TAKKEYIKD 433 (439)
T ss_pred HHHHHHHHHhHHHHhh-HHHHHHHHHHHHHHHHHHHHHHcC--------CHHHHHHHH
Confidence 4567777666554444 667888888888888888877763 555667766
No 309
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=20.66 E-value=1.5e+03 Score=27.52 Aligned_cols=15 Identities=7% Similarity=0.096 Sum_probs=11.9
Q ss_pred cCcEEEEcCCccccc
Q 002103 830 QGIKVVVDKDLREES 844 (966)
Q Consensus 830 ~gikv~vd~~~~~~~ 844 (966)
-+.+|.+++-|-+-+
T Consensus 273 ~~F~I~~~G~fgtIN 287 (447)
T KOG2751|consen 273 ATFHIWHDGEFGTIN 287 (447)
T ss_pred heeeEeecccccccc
Confidence 478899998887766
No 310
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=20.48 E-value=1.2e+03 Score=25.82 Aligned_cols=14 Identities=14% Similarity=-0.083 Sum_probs=6.4
Q ss_pred CccHHHHHHHHHHh
Q 002103 478 LCIRREYARWLVSA 491 (966)
Q Consensus 478 pITRaEFARWLVrA 491 (966)
+||=..|+.++-..
T Consensus 4 ~vtG~~L~~L~~~Y 17 (297)
T PF02841_consen 4 TVTGPMLAELVKSY 17 (297)
T ss_dssp B-BHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHH
Confidence 45555555554443
Done!