Query 002103
Match_columns 966
No_of_seqs 131 out of 172
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 12:29:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002103.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002103hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pyw_A S-layer protein SAP; SL 99.9 3.6E-26 1.2E-30 224.6 15.2 157 455-649 16-174 (203)
2 4aq1_A SBSB protein; structura 99.8 3.4E-22 1.2E-26 230.7 0.0 153 455-649 13-167 (892)
3 3pyw_A S-layer protein SAP; SL 99.7 4.5E-17 1.5E-21 160.2 11.9 109 515-649 3-112 (203)
4 4aq1_A SBSB protein; structura 99.3 2E-13 7E-18 158.6 0.0 108 515-650 2-110 (892)
5 1i84_S Smooth muscle myosin he 94.2 0.12 4E-06 63.3 9.8 7 625-631 768-774 (1184)
6 3na7_A HP0958; flagellar bioge 93.5 7.8 0.00027 39.8 24.5 57 691-747 45-106 (256)
7 2dfs_A Myosin-5A; myosin-V, in 92.5 1.9 6.4E-05 53.0 16.5 28 441-468 662-690 (1080)
8 3oja_B Anopheles plasmodium-re 91.6 0.76 2.6E-05 50.9 10.7 55 728-789 524-578 (597)
9 1i84_S Smooth muscle myosin he 91.5 0.38 1.3E-05 59.0 8.8 15 692-706 899-913 (1184)
10 2dfs_A Myosin-5A; myosin-V, in 90.8 4.1 0.00014 50.1 16.8 27 770-796 1013-1039(1080)
11 3oja_B Anopheles plasmodium-re 90.5 3.2 0.00011 45.9 14.2 56 763-822 524-579 (597)
12 2no2_A HIP-I, huntingtin-inter 90.3 12 0.00039 35.0 15.8 100 675-800 3-102 (107)
13 3vkg_A Dynein heavy chain, cyt 88.8 21 0.00071 48.9 22.0 100 703-808 1980-2092(3245)
14 3vkg_A Dynein heavy chain, cyt 88.3 9.5 0.00033 52.0 18.5 28 516-543 1709-1737(3245)
15 2fxo_A Myosin heavy chain, car 85.0 26 0.00089 33.0 15.6 74 718-798 35-108 (129)
16 2i1j_A Moesin; FERM, coiled-co 82.6 1.6 5.4E-05 50.1 6.4 97 692-788 321-427 (575)
17 3ghg_A Fibrinogen alpha chain; 82.1 9 0.00031 44.3 12.0 14 681-694 78-91 (562)
18 3k29_A Putative uncharacterize 81.4 48 0.0016 33.5 17.0 66 694-765 11-76 (169)
19 2b5u_A Colicin E3; high resolu 78.0 92 0.0032 36.1 18.2 39 774-812 400-441 (551)
20 3g9g_A Suppressor of yeast pro 77.1 73 0.0025 34.0 16.5 48 864-911 202-249 (287)
21 3na7_A HP0958; flagellar bioge 73.9 84 0.0029 32.2 19.4 74 724-800 90-163 (256)
22 1f5n_A Interferon-induced guan 73.3 48 0.0016 38.4 14.9 18 476-493 285-302 (592)
23 3tnu_A Keratin, type I cytoske 70.3 43 0.0015 31.5 11.4 113 681-800 6-125 (131)
24 2b5u_A Colicin E3; high resolu 67.2 1.4E+02 0.0047 34.7 16.4 75 657-737 301-376 (551)
25 1u5p_A Spectrin alpha chain, b 64.0 1E+02 0.0035 29.4 19.4 57 862-919 140-203 (216)
26 1f5n_A Interferon-induced guan 61.8 43 0.0015 38.8 11.5 8 696-703 491-498 (592)
27 2p22_A Suppressor protein STP2 61.5 56 0.0019 33.0 10.8 121 672-793 7-135 (174)
28 3oja_A Leucine-rich immune mol 59.4 2E+02 0.0069 31.2 16.2 14 743-756 412-425 (487)
29 3iox_A AGI/II, PA; alpha helix 58.5 1.3E+02 0.0044 34.8 14.2 15 654-668 13-27 (497)
30 1sjj_A Actinin; 3-helix bundle 55.8 3E+02 0.01 32.1 19.6 16 866-881 520-535 (863)
31 1eq1_A Apolp-III, apolipophori 55.3 34 0.0012 33.8 7.8 91 871-961 59-149 (166)
32 3oja_A Leucine-rich immune mol 53.6 1.4E+02 0.0048 32.5 13.3 9 653-661 324-332 (487)
33 1x79_B RAB GTPase binding effe 52.2 93 0.0032 29.6 10.0 34 740-773 65-98 (112)
34 2ocy_A RAB guanine nucleotide 51.1 2E+02 0.0067 28.6 14.8 23 696-718 69-91 (154)
35 3mq9_A Bone marrow stromal ant 49.4 2.8E+02 0.0097 30.0 16.2 71 698-792 396-466 (471)
36 1jcd_A Major outer membrane li 49.1 62 0.0021 27.1 7.3 44 770-817 5-48 (52)
37 3hnw_A Uncharacterized protein 48.5 54 0.0018 31.6 8.0 23 696-718 72-94 (138)
38 2inr_A DNA topoisomerase 4 sub 46.8 1.9E+02 0.0064 33.5 13.3 57 751-808 437-493 (514)
39 3q8t_A Beclin-1; autophagy, AT 46.6 1.7E+02 0.0058 26.6 11.1 19 758-776 77-95 (96)
40 2k9y_A Ephrin type-A receptor 45.2 10 0.00035 29.1 2.0 30 92-121 10-39 (41)
41 1x79_B RAB GTPase binding effe 44.4 2.1E+02 0.0073 27.2 11.1 68 683-757 29-96 (112)
42 3tnu_B Keratin, type II cytosk 43.7 2.1E+02 0.0071 26.8 12.3 122 678-802 1-125 (129)
43 1u4q_A Spectrin alpha chain, b 42.7 2.7E+02 0.0094 27.9 15.9 161 724-923 36-207 (322)
44 3ol1_A Vimentin; structural ge 42.7 2.1E+02 0.0073 26.6 14.9 19 732-753 63-81 (119)
45 3c98_B Syntaxin-1A; protein co 42.0 2.5E+02 0.0087 27.4 11.9 106 860-965 53-169 (279)
46 1fio_A SSO1 protein; four heli 41.2 1.9E+02 0.0066 27.7 10.8 96 858-958 13-116 (196)
47 2i1j_A Moesin; FERM, coiled-co 40.5 50 0.0017 38.0 7.5 15 867-881 514-528 (575)
48 3bas_A Myosin heavy chain, str 40.0 1.6E+02 0.0056 26.1 9.2 30 723-759 41-70 (89)
49 2eqb_B RAB guanine nucleotide 39.5 2.4E+02 0.0082 26.3 13.8 58 649-720 4-61 (97)
50 1fxk_C Protein (prefoldin); ar 38.9 2.3E+02 0.008 26.0 11.4 26 849-874 72-97 (133)
51 3d2f_A Heat shock protein homo 37.7 2E+02 0.0067 33.6 11.9 43 769-811 611-653 (675)
52 1t6f_A Geminin; coiled-coil, c 35.2 31 0.0011 27.2 3.3 22 772-793 10-31 (37)
53 1wt6_A Myotonin-protein kinase 34.3 2E+02 0.0068 26.1 8.7 57 657-724 14-70 (81)
54 3opc_A Uncharacterized protein 33.2 3.1E+02 0.011 25.7 12.6 120 771-904 6-131 (154)
55 2v71_A Nuclear distribution pr 32.7 4.2E+02 0.014 27.1 14.7 104 688-794 13-116 (189)
56 3vem_A Helicase protein MOM1; 32.2 1.3E+02 0.0044 28.9 7.5 46 712-758 38-85 (115)
57 2xcs_B DNA gyrase subunit B, D 31.8 6E+02 0.021 30.5 14.7 58 751-809 620-677 (692)
58 3ghg_A Fibrinogen alpha chain; 31.2 7.1E+02 0.024 29.3 14.9 24 733-756 137-160 (562)
59 2no2_A HIP-I, huntingtin-inter 30.9 2.2E+02 0.0074 26.5 8.8 27 767-793 52-78 (107)
60 3q8t_A Beclin-1; autophagy, AT 30.8 3.1E+02 0.01 24.9 10.5 70 709-785 10-79 (96)
61 4egx_A Kinesin-like protein KI 30.8 82 0.0028 31.3 6.4 14 683-696 21-34 (184)
62 3mov_A Lamin-B1; LMNB1, B-type 30.2 3E+02 0.01 25.1 9.4 74 721-800 9-85 (95)
63 3i00_A HIP-I, huntingtin-inter 29.9 1.7E+02 0.0058 27.8 8.0 19 711-729 27-45 (120)
64 3r2p_A Apolipoprotein A-I; amp 29.5 2.9E+02 0.01 27.0 10.0 70 886-955 71-140 (185)
65 3lay_A Zinc resistance-associa 28.9 2E+02 0.0067 28.8 8.7 21 766-786 110-130 (175)
66 1ik9_A DNA repair protein XRCC 28.2 2.9E+02 0.0099 28.3 10.0 65 647-713 129-204 (213)
67 2p22_A Suppressor protein STP2 28.1 2E+02 0.0068 29.0 8.6 64 738-801 9-77 (174)
68 1cun_A Protein (alpha spectrin 27.2 4E+02 0.014 25.1 16.4 58 862-920 137-201 (213)
69 4gkw_A Spindle assembly abnorm 27.2 4.7E+02 0.016 25.9 16.8 32 678-710 12-43 (167)
70 1yvi_A Histidine-containing ph 26.2 3.3E+02 0.011 25.6 9.4 56 870-925 27-91 (149)
71 3v6i_A V-type ATP synthase sub 26.1 4.5E+02 0.016 25.4 16.1 52 722-777 58-109 (187)
72 2lse_A Four helix bundle prote 31.9 14 0.00049 33.4 0.0 19 740-758 48-66 (101)
73 3swk_A Vimentin; cytoskeleton, 25.7 1.6E+02 0.0054 26.3 6.7 48 752-799 7-54 (86)
74 2p2u_A HOST-nuclease inhibitor 25.4 2.5E+02 0.0084 27.7 8.6 103 769-876 16-119 (171)
75 2efl_A Formin-binding protein 25.1 5.3E+02 0.018 25.8 19.1 55 770-824 173-228 (305)
76 3qh9_A Liprin-beta-2; coiled-c 24.9 1.7E+02 0.0058 26.6 6.6 51 741-792 26-77 (81)
77 3iyk_A VP5; icosahedral virus; 24.5 8.9E+02 0.03 28.2 14.7 37 632-679 83-119 (526)
78 3zrx_A AF1503 protein, osmolar 24.1 2.9E+02 0.0098 22.4 7.6 25 884-908 35-59 (115)
79 3kkj_A Amine oxidase, flavin-c 24.1 27 0.00094 30.9 1.5 11 97-107 7-17 (336)
80 2eqb_B RAB guanine nucleotide 24.0 4.4E+02 0.015 24.5 10.1 18 744-761 50-67 (97)
81 3he5_A Synzip1; heterodimeric 23.8 1.8E+02 0.006 23.8 5.8 42 654-702 7-48 (49)
82 4aj5_K Spindle and kinetochore 23.7 4.1E+02 0.014 25.8 9.4 105 701-806 7-120 (123)
83 3haj_A Human pacsin2 F-BAR; pa 23.7 7.8E+02 0.027 27.3 16.9 136 661-796 87-240 (486)
84 2nov_A DNA topoisomerase 4 sub 23.5 2.5E+02 0.0086 32.3 9.3 57 751-808 413-469 (496)
85 2spc_A Spectrin; cytoskeleton; 23.0 1.1E+02 0.0037 26.5 5.0 58 862-920 34-98 (107)
86 4etp_A Kinesin-like protein KA 23.0 3E+02 0.01 30.3 9.7 63 762-836 3-65 (403)
87 3i00_A HIP-I, huntingtin-inter 22.6 3.1E+02 0.011 26.1 8.3 17 731-752 63-79 (120)
88 2a01_A Apolipoprotein A-I; fou 22.2 2.4E+02 0.0082 28.9 8.1 42 923-964 195-236 (243)
89 2a01_A Apolipoprotein A-I; fou 21.6 6.4E+02 0.022 25.7 11.2 42 924-965 174-215 (243)
90 1gmj_A ATPase inhibitor; coile 21.2 3.2E+02 0.011 24.9 7.7 48 781-828 24-71 (84)
91 2k1k_A Ephrin type-A receptor 21.0 30 0.001 27.1 0.9 18 96-113 15-32 (38)
92 2xnx_M M protein, M1-BC1; cell 20.8 1.8E+02 0.006 28.9 6.4 31 729-759 64-94 (146)
93 1ud0_A HSC70, 70 kDa heat-shoc 20.7 2.9E+02 0.01 24.5 7.5 44 861-907 4-49 (113)
94 3iyk_A VP5; icosahedral virus; 20.6 1.1E+03 0.036 27.7 13.6 19 782-800 195-213 (526)
95 1gk4_A Vimentin; intermediate 20.2 4.4E+02 0.015 23.1 9.1 32 769-800 40-74 (84)
96 4dnd_A Syntaxin-10, SYN10; str 20.1 5E+02 0.017 24.7 9.3 25 857-881 34-58 (130)
No 1
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH, cell WALL, STR genomics, PSI-biology, protein structure initiative; 1.80A {Bacillus anthracis}
Probab=99.94 E-value=3.6e-26 Score=224.59 Aligned_cols=157 Identities=20% Similarity=0.163 Sum_probs=126.7
Q ss_pred hhHHHHHhccceeccC-CccCCCCCccHHHHHHHHHHhhccccccccccccccccccCCCCCCccCCCCCCCChHHHHHH
Q 002103 455 VQGQALSALQVLKVIE-ADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGL 533 (966)
Q Consensus 455 ~qieaLAaLgVLkIiE-g~F~PnepITRaEFARWLVrA~n~L~Rnp~srV~Pa~~isgste~aF~DVppsDPDF~yIQaA 533 (966)
.+++.|..+|++.+++ +.|+|+++|||+|||.||+++++. +. .......|+||+ +||++.+|+.|
T Consensus 16 ~~I~~l~~~gii~G~~dg~F~P~~~iTR~e~a~~l~r~~~~----------~~---~~~~~~~F~Dv~-~~w~~~~i~~a 81 (203)
T 3pyw_A 16 DSINYLVEKGAVKGNDKGMFEPGKELTRAEAATMMAQILNL----------PI---DKDAKPSFADSQ-GQWYTPFIAAV 81 (203)
T ss_dssp HHHHHHHHTTSCCCCTTSCCCTTCBCBHHHHHHHHHHHTTC----------CC---CTTCCCSCGGGC-SSTTHHHHHHH
T ss_pred HHHHHHHHCcCEecCCCCeECCCCCchHHHHHHHHHHHhCC----------CC---CcCCCCCCCCCC-cHHHHHHHHHH
Confidence 3688899999999997 789999999999999999999871 11 122346899995 99999999999
Q ss_pred HHcCCcccCcccccCCCCCCCCCccCCCCcCcHHHHHHHHH-HhhccCCChhhhhhhhccccccccCCCCcccHHHHHHH
Q 002103 534 AEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKM-ALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLAD 612 (966)
Q Consensus 534 AEAGII~GkLSG~~~~s~ddG~~tFrPD~PITRQELAsWKV-ALe~~~LPead~k~L~~~~gF~D~dkI~~~A~~AV~aD 612 (966)
+++|||.|+. ++ |+|+++|||+||+.|.+ ++++...... .....|.|...| .|+..+|...
T Consensus 82 ~~~Gii~g~~-----------~~-F~P~~~iTR~e~a~~l~r~~~~~~~~~~-----~~~~~f~D~~~i-~wa~~~v~~~ 143 (203)
T 3pyw_A 82 EKAGVIKGTG-----------NG-FEPNGKIDRVSMASLLVEAYKLDTKVNG-----TPATKFKDLETL-NWGKEKANIL 143 (203)
T ss_dssp HHTTSSCCCS-----------SC-CCTTSBCBHHHHHHHHHHHHTGGGGSSS-----CCCCCCHHHHTC-SSSHHHHHHH
T ss_pred HHCcCeecCC-----------CC-CCCCCcccHHHHHHHHHHHhcccccccc-----ccCCCCCCCCcc-HHHHHHHHHH
Confidence 9999999983 34 99999999999999876 5654421110 124579999999 8999999766
Q ss_pred HhcccccceecccCCCCccCCCCCCcHHHHHHHHHhc
Q 002103 613 LTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIG 649 (966)
Q Consensus 613 L~aGDqgIIr~vFG~T~~FQPnKPVTRAEAAAaL~~G 649 (966)
... ||+.+ +.+.|+|++++||+|||++|++-
T Consensus 144 ~~~---Gi~~g---~~~~f~P~~~iTRaE~A~~l~r~ 174 (203)
T 3pyw_A 144 VEL---GISVG---TGDQWEPKKTVTKAEAAQFIAKT 174 (203)
T ss_dssp HHT---TCSCC---CSSCCCTTSBCBHHHHHHHHHHH
T ss_pred HHC---cCEeC---CCCCcCCCCCCcHHHHHHHHHHH
Confidence 654 57755 44689999999999999999964
No 2
>4aq1_A SBSB protein; structural protein, S-layer protein, nanobody; 2.42A {Geobacillus stearothermophilus} PDB: 4aq1_C
Probab=99.83 E-value=3.4e-22 Score=230.69 Aligned_cols=153 Identities=18% Similarity=0.117 Sum_probs=0.0
Q ss_pred hhHHHHHhccceeccC-CccCCCCCccHHHHHHHHHHhhccccccccccccccccccCCCCCCccCCCCCCCChHHHHHH
Q 002103 455 VQGQALSALQVLKVIE-ADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGL 533 (966)
Q Consensus 455 ~qieaLAaLgVLkIiE-g~F~PnepITRaEFARWLVrA~n~L~Rnp~srV~Pa~~isgste~aF~DVppsDPDF~yIQaA 533 (966)
.+++.|+.+|++++++ +.|+|+++|||+|||.||+++++. +. .....+.|.||++ |++.||+.|
T Consensus 13 eaIe~LaekGIIkGY~DGTFrPdkpITRAEFAaMLvRALGL----------e~---~saas~sFSDVp~--Wya~yIaaA 77 (892)
T 4aq1_A 13 DAIDFLVSTGATKGKTETKFGVYDEITRLDAAVILARVLKL----------DV---GNAKDAGFTDVPK--DRAKYVNAL 77 (892)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHCCCEeeCCCCcCCCCcchhHHHHHHHHHHHhCC----------Cc---ccccCCCCCcCCH--HHHHHHHHH
Confidence 4688999999999996 789999999999999999999861 11 1123468999975 678999999
Q ss_pred HHcCCcccCcccccCCCCCCCCCccCCCCcCcHHHHHHHHH-HhhccCCChhhhhhhhccccccccCCCCcccHHHHHHH
Q 002103 534 AEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKM-ALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLAD 612 (966)
Q Consensus 534 AEAGII~GkLSG~~~~s~ddG~~tFrPD~PITRQELAsWKV-ALe~~~LPead~k~L~~~~gF~D~dkI~~~A~~AV~aD 612 (966)
+++|||.|+.+ ++|+|+++|||+||+.|++ +|++.. .. ....|.|...+ |+ ++|...
T Consensus 78 veaGIIsGy~D-----------GTFrPnqpITRAEaAvMLvRALgL~~---~~-----~~ssFkDV~s~--WA-eaIaaA 135 (892)
T 4aq1_A 78 VEAGVLNGKAP-----------GKFGAYDPLTRVEMAKIIANAHKLKA---DD-----VKLPFTDVNDT--WA-PYVKAL 135 (892)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHCCCEecCCC-----------CcCCCCCCccHHHHHHHHHHHhCCCC---cc-----ccCCccCCcHH--HH-HHHHHH
Confidence 99999999853 3899999999999999875 555332 11 24579999865 77 777554
Q ss_pred HhcccccceecccCCCCccCCCCCCcHHHHHHHHHhc
Q 002103 613 LTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIG 649 (966)
Q Consensus 613 L~aGDqgIIr~vFG~T~~FQPnKPVTRAEAAAaL~~G 649 (966)
.. .|||.+. ..+.|+|++++||+|||++|++.
T Consensus 136 ve---~GIIsGy--~DGtFrPn~~ITRAEAAvmL~RA 167 (892)
T 4aq1_A 136 YK---YEVTKGK--TPTSFGAYQNITRGDFAQFVYRA 167 (892)
T ss_dssp -------------------------------------
T ss_pred HH---cCCeecC--CCCcCCCCCcccHHHHHHHHHHH
Confidence 43 4677553 35789999999999999999975
No 3
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH, cell WALL, STR genomics, PSI-biology, protein structure initiative; 1.80A {Bacillus anthracis}
Probab=99.70 E-value=4.5e-17 Score=160.20 Aligned_cols=109 Identities=21% Similarity=0.232 Sum_probs=87.1
Q ss_pred CCccCCCCCCCChHHHHHHHHcCCcccCcccccCCCCCCCCCccCCCCcCcHHHHHHHHH-HhhccCCChhhhhhhhccc
Q 002103 515 LAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKM-ALEKRQLPEANKKILYQLS 593 (966)
Q Consensus 515 ~aF~DVppsDPDF~yIQaAAEAGII~GkLSG~~~~s~ddG~~tFrPD~PITRQELAsWKV-ALe~~~LPead~k~L~~~~ 593 (966)
..|+||+.+||++.+|+.|++.|||.|+.+ ++|+|+++|||+|++.|.+ +++.. ... ....
T Consensus 3 ~~F~Dv~~~~wa~~~I~~l~~~gii~G~~d-----------g~F~P~~~iTR~e~a~~l~r~~~~~---~~~----~~~~ 64 (203)
T 3pyw_A 3 KTFPDVPADHWGIDSINYLVEKGAVKGNDK-----------GMFEPGKELTRAEAATMMAQILNLP---IDK----DAKP 64 (203)
T ss_dssp CCBTTBCTTSTTHHHHHHHHHTTSCCCCTT-----------SCCCTTCBCBHHHHHHHHHHHTTCC---CCT----TCCC
T ss_pred CCCcCCCCCcHHHHHHHHHHHCcCEecCCC-----------CeECCCCCchHHHHHHHHHHHhCCC---CCc----CCCC
Confidence 379999999999999999999999999853 3899999999999999876 44432 111 1245
Q ss_pred cccccCCCCcccHHHHHHHHhcccccceecccCCCCccCCCCCCcHHHHHHHHHhc
Q 002103 594 GFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIG 649 (966)
Q Consensus 594 gF~D~dkI~~~A~~AV~aDL~aGDqgIIr~vFG~T~~FQPnKPVTRAEAAAaL~~G 649 (966)
.|.|.. +.|+.++|...... |||.+. ..+ |+|++++||+|+|++|++.
T Consensus 65 ~F~Dv~--~~w~~~~i~~a~~~---Gii~g~--~~~-F~P~~~iTR~e~a~~l~r~ 112 (203)
T 3pyw_A 65 SFADSQ--GQWYTPFIAAVEKA---GVIKGT--GNG-FEPNGKIDRVSMASLLVEA 112 (203)
T ss_dssp SCGGGC--SSTTHHHHHHHHHT---TSSCCC--SSC-CCTTSBCBHHHHHHHHHHH
T ss_pred CCCCCC--cHHHHHHHHHHHHC---cCeecC--CCC-CCCCCcccHHHHHHHHHHH
Confidence 699985 78999998766544 577553 245 9999999999999999853
No 4
>4aq1_A SBSB protein; structural protein, S-layer protein, nanobody; 2.42A {Geobacillus stearothermophilus} PDB: 4aq1_C
Probab=99.30 E-value=2e-13 Score=158.57 Aligned_cols=108 Identities=21% Similarity=0.228 Sum_probs=0.0
Q ss_pred CCccCCCCCCCChHHHHHHHHcCCcccCcccccCCCCCCCCCccCCCCcCcHHHHHHHHH-HhhccCCChhhhhhhhccc
Q 002103 515 LAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKM-ALEKRQLPEANKKILYQLS 593 (966)
Q Consensus 515 ~aF~DVppsDPDF~yIQaAAEAGII~GkLSG~~~~s~ddG~~tFrPD~PITRQELAsWKV-ALe~~~LPead~k~L~~~~ 593 (966)
+.|.||+. || +.+|+.|++.|||.|+.+ ++|+|+++|||+|++.|++ +++.. ... ....
T Consensus 2 ASFsDV~g-HW-keaIe~LaekGIIkGY~D-----------GTFrPdkpITRAEFAaMLvRALGLe---~~s----aas~ 61 (892)
T 4aq1_A 2 ASFTDVAP-QY-KDAIDFLVSTGATKGKTE-----------TKFGVYDEITRLDAAVILARVLKLD---VGN----AKDA 61 (892)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccCCCH-HH-HHHHHHHHHCCCEeeCCC-----------CcCCCCcchhHHHHHHHHHHHhCCC---ccc----ccCC
Confidence 47999965 77 999999999999999853 3899999999999999875 44332 211 1235
Q ss_pred cccccCCCCcccHHHHHHHHhcccccceecccCCCCccCCCCCCcHHHHHHHHHhcc
Q 002103 594 GFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGE 650 (966)
Q Consensus 594 gF~D~dkI~~~A~~AV~aDL~aGDqgIIr~vFG~T~~FQPnKPVTRAEAAAaL~~G~ 650 (966)
.|.|. ++|++++|..... .|||.+. ..+.|+|++++||+|+|+||++.-
T Consensus 62 sFSDV---p~Wya~yIaaAve---aGIIsGy--~DGTFrPnqpITRAEaAvMLvRAL 110 (892)
T 4aq1_A 62 GFTDV---PKDRAKYVNALVE---AGVLNGK--APGKFGAYDPLTRVEMAKIIANAH 110 (892)
T ss_dssp ---------------------------------------------------------
T ss_pred CCCcC---CHHHHHHHHHHHH---CCCEecC--CCCcCCCCCCccHHHHHHHHHHHh
Confidence 79995 5688888755443 4677553 267899999999999999998643
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.18 E-value=0.12 Score=63.35 Aligned_cols=7 Identities=29% Similarity=0.914 Sum_probs=3.8
Q ss_pred cCCCCcc
Q 002103 625 FGCTRLF 631 (966)
Q Consensus 625 FG~T~~F 631 (966)
+|.|..|
T Consensus 768 iG~TKVF 774 (1184)
T 1i84_S 768 IGQSKIF 774 (1184)
T ss_dssp BCSSEEE
T ss_pred EcCeEEE
Confidence 4555555
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.49 E-value=7.8 Score=39.82 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=25.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhHHHHHHHHHHHHH
Q 002103 691 EKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIAL-----MKERAAIESEMEILSKLR 747 (966)
Q Consensus 691 ~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~l-----lKerAa~e~e~q~L~~Lr 747 (966)
...+..-+..+..+++.......+++..+....+....+ -||-.++..|.+.+..-.
T Consensus 45 ~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i 106 (256)
T 3na7_A 45 NKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERS 106 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555555555544333333322 244445555554444333
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.55 E-value=1.9 Score=53.01 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=14.8
Q ss_pred cCCCceecccccChhh-HHHHHhccceec
Q 002103 441 VLPGKVLVPAVVDQVQ-GQALSALQVLKV 468 (966)
Q Consensus 441 V~p~rv~VPavvD~~q-ieaLAaLgVLkI 468 (966)
++|..-..|..-|... ...|..+|+|..
T Consensus 662 IkPN~~k~p~~fd~~~V~~QLr~~GvlE~ 690 (1080)
T 2dfs_A 662 IKPNDFKFPFTFDEKRAVQQLRACGVLET 690 (1080)
T ss_dssp ECCCSSCCTTCCCHHHHHHHHHTTTHHHH
T ss_pred ecCCCCCCchhcCHHhhHHHHhhcccHHH
Confidence 4566666666666443 334445555543
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.63 E-value=0.76 Score=50.85 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=28.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002103 728 ALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQ 789 (966)
Q Consensus 728 ~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k 789 (966)
.+.+.+.+++.+++.+-.|+.|++++-.++- ..+++++.|..+++...+++.++.
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~-------~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 524 ETQARRTEADAKQKETEDLEQENIALEKQLD-------NKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhcchhhHHhhhHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666666666666554433 234444555555444444444443
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=91.47 E-value=0.38 Score=58.99 Aligned_cols=15 Identities=27% Similarity=0.286 Sum_probs=6.3
Q ss_pred HHHHHHHhhHHHHHH
Q 002103 692 KELSMEREKIDVVEK 706 (966)
Q Consensus 692 ~el~~Er~~~~~vEk 706 (966)
.++..|+.....++.
T Consensus 899 ~~L~~e~~~l~~~e~ 913 (1184)
T 1i84_S 899 EKLQAETELYAEAEE 913 (1184)
T ss_dssp HHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444433333
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.82 E-value=4.1 Score=50.11 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002103 770 RINMLRKEAENENQEIARLQYELEVER 796 (966)
Q Consensus 770 ~l~kL~~~~e~~~q~i~~~k~~LE~Ek 796 (966)
++++++.+++.+...+...+..|+.+.
T Consensus 1013 ~~~~~~~~L~~kv~~L~~e~~~L~qq~ 1039 (1080)
T 2dfs_A 1013 WADKYKHETEQLVSELKEQNTLLKTEK 1039 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333333333343333
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.47 E-value=3.2 Score=45.94 Aligned_cols=56 Identities=27% Similarity=0.332 Sum_probs=29.9
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002103 763 EISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEG 822 (966)
Q Consensus 763 ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEe 822 (966)
+.-..++.++++..+++.-.+++.+++-.+|..|+.+.-++ +|..+.++.=+-|++
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~----~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 524 ETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELR----QETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHHHH
Confidence 33445555555555555555666666666666666665443 344444444444444
No 12
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=90.31 E-value=12 Score=34.97 Aligned_cols=100 Identities=24% Similarity=0.345 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 002103 675 HSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQL 754 (966)
Q Consensus 675 ~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~ 754 (966)
|..|+-+ -.|+. +.|...|.--.++++.-.+.-.++++++ ...-.-++.|+..|-.|+.|+..-+
T Consensus 3 Hi~LLRK-~aE~~----KqL~~~~q~~~e~e~~k~eL~~~~~~~~----------~~~~~k~~eq~~~le~lk~eL~~~~ 67 (107)
T 2no2_A 3 HADLLRK-NAEVT----KQVSMARQAQVDLEREKKELEDSLERIS----------DQGQRKTQEQLEVLESLKQELATSQ 67 (107)
T ss_dssp HHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445544 24553 5666777777777777777777777766 2223345667788888888888776
Q ss_pred HHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002103 755 ESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 800 (966)
Q Consensus 755 q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ 800 (966)
+-|-. |+.-+...+.....+......|+.||.+|.
T Consensus 68 ~el~~-----------lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 68 RELQV-----------LQGSLETSAQSEANWAAEFAELEKERDSLV 102 (107)
T ss_dssp HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66544 555555556666667777788888888875
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.79 E-value=21 Score=48.89 Aligned_cols=100 Identities=14% Similarity=0.129 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhhhHHHHHHHHHHHHHHHHHHHHHHhhhcce---ehhhHHH
Q 002103 703 VVEKMAEEARQELERLRAEREVDKIALM----------KERAAIESEMEILSKLRREVEEQLESLMSNKV---EISYEKE 769 (966)
Q Consensus 703 ~vEk~~eea~~eLe~~r~ere~e~~~ll----------KerAa~e~e~q~L~~Lr~EVde~~q~L~s~kv---ei~~Ek~ 769 (966)
+.|+.+++...|.+..|.+-++++++-+ +-.+.++..++.|..++.++.+.-++|+.-+. +.+.||+
T Consensus 1980 ~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~ 2059 (3245)
T 3vkg_A 1980 ELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETE 2059 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555666666666554422 11223334445555555555544444444443 4456888
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHH
Q 002103 770 RINMLRKEAENENQEIARLQYELEVERKALSMARAWAED 808 (966)
Q Consensus 770 ~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEd 808 (966)
+|+.-...++.+.+...+|-.-|..||. .|.+.
T Consensus 2060 ~L~~e~~~~~~kl~rA~~Li~gL~~Ek~------RW~~~ 2092 (3245)
T 3vkg_A 2060 QIKTESSKVKNKVDRSIALLDNLNSERG------RWEQQ 2092 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccc------cHHHH
Confidence 8888888888888888888888888886 56654
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.33 E-value=9.5 Score=52.00 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=20.6
Q ss_pred CccCCCCCCCCh-HHHHHHHHcCCcccCc
Q 002103 516 AFDDITPEDPDF-SSIQGLAEAGLISSKL 543 (966)
Q Consensus 516 aF~DVppsDPDF-~yIQaAAEAGII~GkL 543 (966)
-|+|-.--++.| .+|..+...|=||+-.
T Consensus 1709 L~tD~qi~~e~FLE~IN~lL~sGEVP~LF 1737 (3245)
T 3vkg_A 1709 IFDESNVLESSFLERMNTLLAGGEVPGLF 1737 (3245)
T ss_dssp EEEGGGCSSTHHHHHHHHHHHHSCCTTSS
T ss_pred EEeccccccHHHHHHHHHHhccCCccccC
Confidence 477766666655 5789999999998754
No 15
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=84.98 E-value=26 Score=32.99 Aligned_cols=74 Identities=19% Similarity=0.331 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002103 718 LRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERK 797 (966)
Q Consensus 718 ~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ekk 797 (966)
.|.+-+..+..|+.++..+--+.+.=..+-.+.++++.+|...+++.- .-..+++.+.+...+.-..|.++|+
T Consensus 35 ~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe-------~~l~el~~rleeeee~~~~L~~~kk 107 (129)
T 2fxo_A 35 RRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLE-------AKVKEMNKRLEDEEEMNAELTAKKR 107 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556677777777766666666677788899998877665543 3334444444444444444444444
Q ss_pred H
Q 002103 798 A 798 (966)
Q Consensus 798 A 798 (966)
=
T Consensus 108 k 108 (129)
T 2fxo_A 108 K 108 (129)
T ss_dssp H
T ss_pred H
Confidence 3
No 16
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=82.60 E-value=1.6 Score=50.14 Aligned_cols=97 Identities=19% Similarity=0.257 Sum_probs=16.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002103 692 KELSMEREKIDVVEKMAEEARQELERLRAEREV---------DKIALMK-ERAAIESEMEILSKLRREVEEQLESLMSNK 761 (966)
Q Consensus 692 ~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~---------e~~~llK-erAa~e~e~q~L~~Lr~EVde~~q~L~s~k 761 (966)
.+|..||...+++|+--++...-|..+..+-.+ +.+.+|- ++.-.+.|.++|.+-+.|.+++.++|....
T Consensus 321 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~ 400 (575)
T 2i1j_A 321 EKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETK 400 (575)
T ss_dssp TTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544444444444433332 3333333 344567888999999999999999999998
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHH
Q 002103 762 VEISYEKERINMLRKEAENENQEIARL 788 (966)
Q Consensus 762 vei~~Ek~~l~kL~~~~e~~~q~i~~~ 788 (966)
..-..||++|+.-..+.+.+-..+.+.
T Consensus 401 ~~~~~e~~~l~~~~~~~~~~~~~~~~~ 427 (575)
T 2i1j_A 401 NMEAAERQKLEDEIRAKQEEVSRIQQE 427 (575)
T ss_dssp ---------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888765555555444444333
No 17
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.13 E-value=9 Score=44.31 Aligned_cols=14 Identities=7% Similarity=0.048 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 002103 681 EVEKEINESFEKEL 694 (966)
Q Consensus 681 ~~~~di~~~f~~el 694 (966)
+..+|+.+++...+
T Consensus 78 KnsKdseqy~k~~~ 91 (562)
T 3ghg_A 78 KNNKDSHSLTTNIM 91 (562)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhchhHHHHHHHHH
Confidence 33666666665443
No 18
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=81.42 E-value=48 Score=33.48 Aligned_cols=66 Identities=21% Similarity=0.296 Sum_probs=40.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehh
Q 002103 694 LSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEIS 765 (966)
Q Consensus 694 l~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~ 765 (966)
|.+-+.+.++.||.+-+.+-.||.++..-.+..+++=|- ..+-++-+.-||+++|. .-.|+++-.|
T Consensus 11 ~~~k~~r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~---~~h~~~k~~qlre~~d~---gtt~~~i~~m 76 (169)
T 3k29_A 11 LSIKKDRVDRAEKVVKEKRRLLELEQEKLRERESERDKV---KNHYMQKIRQLREQLDD---GTTSDAILKM 76 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc---CCCcHHHHHH
Confidence 344567788899999999988888887554444433332 23344557778877764 3444444433
No 19
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=77.99 E-value=92 Score=36.12 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHhHHHHHHH
Q 002103 774 LRKEAENENQEIARLQYELEVERKALSMA---RAWAEDEAKR 812 (966)
Q Consensus 774 L~~~~e~~~q~i~~~k~~LE~EkkAL~ma---R~WaEdEA~r 812 (966)
.+.|+.+++-....++-++---+-||+.+ |-=.|++.|-
T Consensus 400 ~~~dv~~~~a~~d~~~~~~s~~~~~ls~~me~Rkq~e~k~k~ 441 (551)
T 2b5u_A 400 AQTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDKKRS 441 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhcccchhhhhhhhhhcccchhhhhhh
Confidence 33444444444444444555555566665 5555555554
No 20
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=77.12 E-value=73 Score=33.98 Aligned_cols=48 Identities=8% Similarity=0.061 Sum_probs=29.4
Q ss_pred HhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002103 864 SRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASM 911 (966)
Q Consensus 864 ~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~ 911 (966)
.+|-.+.++++.+-..=---.+++|.++-.++...+....+-..+..+
T Consensus 202 s~aP~~fe~fQ~lEEeRL~~Lkd~L~~y~~~~sd~~~~~~~~~E~~~~ 249 (287)
T 3g9g_A 202 QQSPYLFELFETIDYNRLDTLKNCMLRFQTSFSDYLLNTTKECETVMT 249 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888887765544455666666666666655555444444433
No 21
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=73.92 E-value=84 Score=32.22 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=35.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002103 724 VDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 800 (966)
Q Consensus 724 ~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ 800 (966)
+++.+|.||-..++.+.+.| ..++-+..+++-..+..+..-+..+..+..+++....++...-.+++.|.++|.
T Consensus 90 kE~~aL~kEie~~~~~i~~l---E~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQA---NREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIF 163 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666655554444433 334444433333333334444445555555555555555555555555544443
No 22
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=73.34 E-value=48 Score=38.44 Aligned_cols=18 Identities=6% Similarity=-0.020 Sum_probs=12.2
Q ss_pred CCCccHHHHHHHHHHhhc
Q 002103 476 GDLCIRREYARWLVSASS 493 (966)
Q Consensus 476 nepITRaEFARWLVrA~n 493 (966)
+.++|=..|+.++-...+
T Consensus 285 g~~vtG~~L~~l~~~yv~ 302 (592)
T 1f5n_A 285 GIQVNGPRLESLVLTYVN 302 (592)
T ss_dssp TEECBHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHH
Confidence 458888888877644443
No 23
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=70.34 E-value=43 Score=31.52 Aligned_cols=113 Identities=19% Similarity=0.273 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhHHHHHHHHHHHHH-HHHHHHHHH
Q 002103 681 EVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRA---EREVDKIALMKERAAIESEMEILSKLR-REVEEQLES 756 (966)
Q Consensus 681 ~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~---ere~e~~~llKerAa~e~e~q~L~~Lr-~EVde~~q~ 756 (966)
+-+.|+...|..|+..=+.....--..+..++.|+-++|. .-+.++..+.+.++++|.....+-.-. .++. .++.
T Consensus 6 knr~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~-~~q~ 84 (131)
T 3tnu_A 6 KNRKDAEEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLA-QIQE 84 (131)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3355665555544322121111111122334444444443 223344555566666666544332211 1111 1221
Q ss_pred hhhcceehhhHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHH
Q 002103 757 LMSNKVEISYEKERINMLRKEAEN---ENQEIARLQYELEVERKALS 800 (966)
Q Consensus 757 L~s~kvei~~Ek~~l~kL~~~~e~---~~q~i~~~k~~LE~EkkAL~ 800 (966)
. |..=...|++++.+++. +.|.+.++|--|+.|..+-+
T Consensus 85 ~------i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYR 125 (131)
T 3tnu_A 85 M------IGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYR 125 (131)
T ss_dssp H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11113446666666664 56789999999999987764
No 24
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=67.18 E-value=1.4e+02 Score=34.73 Aligned_cols=75 Identities=15% Similarity=0.222 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 002103 657 EELQRIEAESAAENAVS-EHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAA 735 (966)
Q Consensus 657 eEL~RlEAE~~a~~av~-~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa 735 (966)
||=+|.++|+....-+. |+.+ .++.+.++++- ++-..+-++|..-.+++|.+++.+|.. -.+-++..++++-.
T Consensus 301 eee~r~~qew~~~hp~~~Aer~-~e~a~ael~~a-~k~~a~~~er~~~t~~~~~~~~~~~~~----~n~~~~~~~~~~~~ 374 (551)
T 2b5u_A 301 DEENRRQQEWDATHPVEAAERN-YERARAELNQA-NEDVARNQERQAKAVQVYNSRKSELDA----ANKTLADAIAEIKQ 374 (551)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCcHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHh----hhhHHHHHHHhhhh
Confidence 34455555554332222 2322 45556676532 333333466767788899998888843 44555566666655
Q ss_pred HH
Q 002103 736 IE 737 (966)
Q Consensus 736 ~e 737 (966)
..
T Consensus 375 f~ 376 (551)
T 2b5u_A 375 FN 376 (551)
T ss_dssp HG
T ss_pred hh
Confidence 54
No 25
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=63.99 E-value=1e+02 Score=29.36 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=38.7
Q ss_pred HHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHH
Q 002103 862 TVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFIS-------NLKKWASKASMRAAELKDA 919 (966)
Q Consensus 862 ~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~-------~l~~~~~~~~~~~~~~~~~ 919 (966)
.+.-++.|+.|.+.+..++...- ..|..|+..-..||. .|++++.++..+...|.+.
T Consensus 140 dl~~v~~ll~kh~~~~~el~~~~-~~i~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~ 203 (216)
T 1u5p_A 140 DLTGVQNLRKKHKRLEAELAAHE-PAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQL 203 (216)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46667889999999988887543 356677777777664 4566666666555555554
No 26
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=61.84 E-value=43 Score=38.84 Aligned_cols=8 Identities=38% Similarity=0.505 Sum_probs=3.0
Q ss_pred HHHhhHHH
Q 002103 696 MEREKIDV 703 (966)
Q Consensus 696 ~Er~~~~~ 703 (966)
.||.|.++
T Consensus 491 ~~~~~~e~ 498 (592)
T 1f5n_A 491 VERVKAES 498 (592)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 27
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=61.46 E-value=56 Score=32.95 Aligned_cols=121 Identities=11% Similarity=0.151 Sum_probs=78.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 002103 672 VSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEA----RQELERLRAEREVDKIALMKERAAIESEMEILSKLR 747 (966)
Q Consensus 672 v~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea----~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr 747 (966)
-..|.+|++.++--|+++.+.-...+.+.++..+..++.+ ..+|..-...-+.....|-+++..++.+.+.|..=.
T Consensus 7 ~~~~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~ 86 (174)
T 2p22_A 7 PTNHHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANR 86 (174)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999988888888888876666433 445555555555555566666666666666555533
Q ss_pred HHHHHHHHHhh-hcc---eehhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002103 748 REVEEQLESLM-SNK---VEISYEKERINMLRKEAENENQEIARLQYELE 793 (966)
Q Consensus 748 ~EVde~~q~L~-s~k---vei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE 793 (966)
.++++.... . ++. =+++.+..-+.+..=++-.+..+|.++=|+|.
T Consensus 87 ~k~~e~~~~-~~~~~~diD~~v~~~~~l~~Qll~l~Aed~AieDaIy~L~ 135 (174)
T 2p22_A 87 AKVQQFSST-SHVDDEDVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLS 135 (174)
T ss_dssp HHHHHHTTS-SCCCSSCGGGTEECSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCCCCChhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332211 1 011 12344556666777788888889999888886
No 28
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=59.39 E-value=2e+02 Score=31.25 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 002103 743 LSKLRREVEEQLES 756 (966)
Q Consensus 743 L~~Lr~EVde~~q~ 756 (966)
+.......++|.+.
T Consensus 412 ~~~~~~~~~~~~~~ 425 (487)
T 3oja_A 412 LRAIVKRYEEMYVE 425 (487)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333334444443
No 29
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=58.55 E-value=1.3e+02 Score=34.78 Aligned_cols=15 Identities=33% Similarity=0.477 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHh
Q 002103 654 AVNEELQRIEAESAA 668 (966)
Q Consensus 654 ~v~eEL~RlEAE~~a 668 (966)
.+..||+|+++.|..
T Consensus 13 ~yq~elarvqkana~ 27 (497)
T 3iox_A 13 AYQTELARVQKANAD 27 (497)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356778888777743
No 30
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=55.84 E-value=3e+02 Score=32.11 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhhhhcc
Q 002103 866 AQSLVDKLKAMANDVS 881 (966)
Q Consensus 866 a~~l~~klk~m~~~~~ 881 (966)
++.|+.|.+.+..++.
T Consensus 520 ve~ll~kh~~~~~~l~ 535 (863)
T 1sjj_A 520 IQGLTTAHEQFKATLP 535 (863)
T ss_dssp GHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHhHHH
Confidence 4455555555544443
No 31
>1eq1_A Apolp-III, apolipophorin-III; five helix-bundle, "helix-short helix-helix" recognition motif, lipid binding protein; NMR {Manduca sexta} SCOP: a.63.1.1
Probab=55.33 E-value=34 Score=33.84 Aligned_cols=91 Identities=23% Similarity=0.304 Sum_probs=76.9
Q ss_pred HHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhhh
Q 002103 871 DKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVA 950 (966)
Q Consensus 871 ~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~ 950 (966)
.-|+.--.|.+||.++.|..--+.|..--..||.---.+.+++..|+|.-..-+..-+++.|.-+-++++.+-+--++++
T Consensus 59 ~slq~al~dangkakeALEq~R~nlektAeeLRkaHPdVE~qA~~lrdkLqaAVQ~t~qesqkLaKeVasn~eetN~KLa 138 (166)
T 1eq1_A 59 SSLQGAISDANGKAKEALEQARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNMEETNKKLA 138 (166)
T ss_dssp HHHHHHHTTCSSTHHHHHHHHHHHHHHHHHGGGGCSHHHHHTCSSSHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCGGGH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHhh
Confidence 34444556788999999999999998888889888888889999999988788888899999999999999999999988
Q ss_pred hhhhhhHHhhh
Q 002103 951 GDCREGVEKLT 961 (966)
Q Consensus 951 ~~c~~gv~k~~ 961 (966)
--.++..+.|.
T Consensus 139 PkiK~Ay~dF~ 149 (166)
T 1eq1_A 139 PKIKQAYDDFV 149 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 87777665543
No 32
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=53.59 E-value=1.4e+02 Score=32.46 Aligned_cols=9 Identities=22% Similarity=0.276 Sum_probs=3.5
Q ss_pred hhHHHHHHH
Q 002103 653 DAVNEELQR 661 (966)
Q Consensus 653 e~v~eEL~R 661 (966)
+.+..|+..
T Consensus 324 ~eF~~Eve~ 332 (487)
T 3oja_A 324 ETERLECER 332 (487)
T ss_dssp -CHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 33
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=52.22 E-value=93 Score=29.57 Aligned_cols=34 Identities=32% Similarity=0.461 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHH
Q 002103 740 MEILSKLRREVEEQLESLMSNKVEISYEKERINM 773 (966)
Q Consensus 740 ~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~k 773 (966)
.+.++.++.+|-+++..|+-.|-.|.+|=.+|++
T Consensus 65 qq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~ 98 (112)
T 1x79_B 65 QQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQK 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788888999999888877777776555543
No 34
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.12 E-value=2e+02 Score=28.63 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=8.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q 002103 696 MEREKIDVVEKMAEEARQELERL 718 (966)
Q Consensus 696 ~Er~~~~~vEk~~eea~~eLe~~ 718 (966)
.|+.+..++|+-....-.|||.|
T Consensus 69 ~E~~~R~~aE~~~~~ie~ElEeL 91 (154)
T 2ocy_A 69 KENELRTKAEEEADKLNKEVEDL 91 (154)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 35
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=49.41 E-value=2.8e+02 Score=29.96 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=42.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHH
Q 002103 698 REKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKE 777 (966)
Q Consensus 698 r~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~ 777 (966)
|.....++|-+.+++..|.++|+.---++...+-=++.+|.+ |-.++ .||++|..+
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~--------------~~~~~~~~~ 451 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAE----------KAQGQ--------------KKVEELEGE 451 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH--------------HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHH----------HHHHH--------------HHHHHHHHH
Confidence 444555777777888888877777776666665544444433 22211 266666666
Q ss_pred HHHHHHHHHHHhHHH
Q 002103 778 AENENQEIARLQYEL 792 (966)
Q Consensus 778 ~e~~~q~i~~~k~~L 792 (966)
+...++.+.++..++
T Consensus 452 ~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 452 ITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666665544433
No 36
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=49.13 E-value=62 Score=27.07 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002103 770 RINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQA 817 (966)
Q Consensus 770 ~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A 817 (966)
.+++|..+++.=...|..|++ +..+|.-.-.=+.+||.|+.+|-
T Consensus 5 ki~~Lss~V~~L~~kVdqLss----dV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASN----DANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 466677777666666666666 33444444446889999998874
No 37
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=48.47 E-value=54 Score=31.62 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=9.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q 002103 696 MEREKIDVVEKMAEEARQELERL 718 (966)
Q Consensus 696 ~Er~~~~~vEk~~eea~~eLe~~ 718 (966)
..++....++..+++...|+..+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~l 94 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDL 94 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333333
No 38
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=46.79 E-value=1.9e+02 Score=33.50 Aligned_cols=57 Identities=19% Similarity=0.163 Sum_probs=43.0
Q ss_pred HHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHH
Q 002103 751 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAED 808 (966)
Q Consensus 751 de~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEd 808 (966)
+.|.+.|..-++-=.. +...+||.++++...+++.+++..|..+.+-..+.+.+.++
T Consensus 437 e~qa~~IL~m~L~rLT-~~e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~ 493 (514)
T 2inr_A 437 EEQAEAIVMLQLYRLT-NTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNE 493 (514)
T ss_dssp HHHHHHHHTCCGGGGS-TTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566666665553332 34578899999999999999999999998888887777654
No 39
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=46.59 E-value=1.7e+02 Score=26.59 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=9.4
Q ss_pred hhcceehhhHHHHHHHHHH
Q 002103 758 MSNKVEISYEKERINMLRK 776 (966)
Q Consensus 758 ~s~kvei~~Ek~~l~kL~~ 776 (966)
-|-...|.|-+..|+||++
T Consensus 77 ~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 77 KSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3334445555555555543
No 40
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=45.17 E-value=10 Score=29.13 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=22.4
Q ss_pred CCCCccccchhhHHHHHhhhhHHhhhcccc
Q 002103 92 GGLGGIVQAGVAGVVLFAGLTFAALSLSKR 121 (966)
Q Consensus 92 ~~~~g~v~~gvagv~l~~gl~faa~s~sk~ 121 (966)
+.+.+++|+-++|++|++++.+..+.+.||
T Consensus 10 ~~~~~I~~~vv~Gv~ll~~iv~~~~~~~rR 39 (41)
T 2k9y_A 10 SGNLAVIGGVAVGVVLLLVLAGVGFFIHRR 39 (41)
T ss_dssp CSSTHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred CceEEEEeehhHHHHHHHHHHHHheeEeee
Confidence 456677777788888888777777777665
No 41
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=44.39 E-value=2.1e+02 Score=27.16 Aligned_cols=68 Identities=21% Similarity=0.335 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002103 683 EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESL 757 (966)
Q Consensus 683 ~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L 757 (966)
+.|+..+|.++-..=..++-++--.++.+-..|..++ -.+..-+.++.+++..|..=|+.|-+.|.+|
T Consensus 29 r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lq-------q~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rL 96 (112)
T 1x79_B 29 KQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQ-------QGLSQAKRDVQEQMAVLMQSREQVSEELVRL 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666667766543334444444444444444444444 2344445556666666666666665555554
No 42
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=43.67 E-value=2.1e+02 Score=26.75 Aligned_cols=122 Identities=8% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 002103 678 LVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRA---EREVDKIALMKERAAIESEMEILSKLRREVEEQL 754 (966)
Q Consensus 678 l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~---ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~ 754 (966)
|..+-+.|+...|..|+..=+.....--..+..++.|+-++|. .-+-++..+.+-++++|+....+-.-...--..+
T Consensus 1 ia~knr~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~ 80 (129)
T 3tnu_B 1 MANRSRTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDA 80 (129)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002103 755 ESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMA 802 (966)
Q Consensus 755 q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ma 802 (966)
+..... +-.|-.++..=....-.+.|.+.++|--|+.|..+-+-|
T Consensus 81 q~~i~~---lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRkL 125 (129)
T 3tnu_B 81 RNKLAE---LEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRKL 125 (129)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 43
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=42.71 E-value=2.7e+02 Score=27.88 Aligned_cols=161 Identities=14% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002103 724 VDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMAR 803 (966)
Q Consensus 724 ~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR 803 (966)
.....+|++--.++.+......--.+|..+-+.|.... -++...|......+...-+.+..+
T Consensus 36 ~~v~~ll~kh~~le~~i~~~~~~v~~l~~~a~~l~~~~---~~~~~~i~~~~~~l~~~w~~L~~~--------------- 97 (322)
T 1u4q_A 36 ASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSS---AFDTSQVKDKRETINGRFQRIKSM--------------- 97 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCC---SSCTHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC---CCChHHHHHHHHHHHHHHHHHHHH---------------
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhHHhhcCcEEEEcCCccccccccchhhhc----ccccchHHHHHhHHHHHHHHHHhhhh
Q 002103 804 AWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNA----GKQFSVDQTVSRAQSLVDKLKAMAND 879 (966)
Q Consensus 804 ~WaEdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w~~~----~~~~~~~~~~~ra~~l~~klk~m~~~ 879 (966)
+.+|-..||++..-|. |..+...-..|... -...++-..+..++.++.|.+.+..+
T Consensus 98 ---------~~~R~~~Le~~~~l~~-----------f~~~~~~~~~Wl~e~e~~~~~~~~g~dl~~v~~ll~~h~~l~~e 157 (322)
T 1u4q_A 98 ---------AAARRAKLNESHRLHQ-----------FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAE 157 (322)
T ss_dssp ---------HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHH
Q ss_pred cccchHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHHHH
Q 002103 880 VSGKSKEIINTIIHKILLFI-------SNLKKWASKASMRAAELKDATILK 923 (966)
Q Consensus 880 ~~~~~~~~~~~~~~~i~~~i-------~~l~~~~~~~~~~~~~~~~~~~~~ 923 (966)
|..... .|..+...-..|+ ..|+++...+..+-..|.+.+..+
T Consensus 158 l~~~~~-~i~~l~~~g~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~R 207 (322)
T 1u4q_A 158 LAAHEP-AIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAAR 207 (322)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
No 44
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=42.66 E-value=2.1e+02 Score=26.62 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 002103 732 ERAAIESEMEILSKLRREVEEQ 753 (966)
Q Consensus 732 erAa~e~e~q~L~~Lr~EVde~ 753 (966)
.|+.+|.+ |..||..||+.
T Consensus 63 ~r~~~E~d---i~~lrK~lD~~ 81 (119)
T 3ol1_A 63 QREEAENT---LQSFRQDVDNA 81 (119)
T ss_dssp HHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHH---HHHhhhcccHH
Confidence 35555543 45567777654
No 45
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=41.96 E-value=2.5e+02 Score=27.36 Aligned_cols=106 Identities=10% Similarity=0.125 Sum_probs=52.5
Q ss_pred HHHHHhHHHHHHHHHHhhhhcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-----HHHhhhhH
Q 002103 860 DQTVSRAQSLVDKLKAMANDVS------GKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDAT-----ILKAKGSV 928 (966)
Q Consensus 860 ~~~~~ra~~l~~klk~m~~~~~------~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 928 (966)
...|..-...++.|..++..+. ....+-++.+++.|..++..++..+..+........... +.-.....
T Consensus 53 ~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~~~~~~i~~~~~qt 132 (279)
T 3c98_B 53 RGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQH 132 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHH
Confidence 3344444555555555544432 234555677777777777766666555544333222110 00001111
Q ss_pred HHHHHhHHHHhhhhcccchhhhhhhhhhHHhhhhhcc
Q 002103 929 QELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFK 965 (966)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~kr~~~~c~~gv~k~~~rfk 965 (966)
.-|........+...+--++++.-|++-|.+++++..
T Consensus 133 n~La~n~a~~~a~~~~~~~~~~~vva~evr~la~~~~ 169 (279)
T 3c98_B 133 STLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITG 169 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2223333333333444446677778888888887653
No 46
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=41.16 E-value=1.9e+02 Score=27.74 Aligned_cols=96 Identities=8% Similarity=0.140 Sum_probs=55.8
Q ss_pred chHHHHHhHHHHHHHHHHhhhhccc--------chHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHH
Q 002103 858 SVDQTVSRAQSLVDKLKAMANDVSG--------KSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQ 929 (966)
Q Consensus 858 ~~~~~~~ra~~l~~klk~m~~~~~~--------~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (966)
.+..-|.+....+.+|+.+-..+.. ..++-|+.+++.|..++..++..+..+.....+... .........+
T Consensus 13 ~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~~~r~-~k~~~~~L~~ 91 (196)
T 1fio_A 13 QINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTN-KQAQAENSRQ 91 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhH-HHHHHHHHHH
Confidence 4556677888888888888776432 355667777777877777777777776654321111 1222333445
Q ss_pred HHHHhHHHHhhhhcccchhhhhhhhhhHH
Q 002103 930 ELQQSTAEFRSNLTEGAKRVAGDCREGVE 958 (966)
Q Consensus 930 ~~~~~~~~~~~~~~~~~kr~~~~c~~gv~ 958 (966)
.++....+|...- ....+.||.-+.
T Consensus 92 ~f~~~~~~fq~~Q----~~~~~~~k~~~~ 116 (196)
T 1fio_A 92 RFLKLIQDYRIVD----SNYKEENKEQAK 116 (196)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 5555555554433 344455555443
No 47
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=40.46 E-value=50 Score=38.04 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhhhcc
Q 002103 867 QSLVDKLKAMANDVS 881 (966)
Q Consensus 867 ~~l~~klk~m~~~~~ 881 (966)
+.|-++|+.|..++.
T Consensus 514 ~~lq~qL~~L~~el~ 528 (575)
T 2i1j_A 514 ERLHNQLKALKQDLA 528 (575)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 577777777776654
No 48
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=40.00 E-value=1.6e+02 Score=26.15 Aligned_cols=30 Identities=20% Similarity=0.504 Sum_probs=13.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002103 723 EVDKIALMKERAAIESEMEILSKLRREVEEQLESLMS 759 (966)
Q Consensus 723 e~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s 759 (966)
+.....|+.++..+.-| -.+.+++..+|..
T Consensus 41 e~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~ 70 (89)
T 3bas_A 41 EEQNVTLLEQKNDLFGS-------MKQLEDKVEELLS 70 (89)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHH
Confidence 33444555555554444 3444444444433
No 49
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=39.52 E-value=2.4e+02 Score=26.28 Aligned_cols=58 Identities=21% Similarity=0.375 Sum_probs=40.9
Q ss_pred ccchhhHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002103 649 GEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRA 720 (966)
Q Consensus 649 G~~~e~v~eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ 720 (966)
|..-+...++|.+|+.+..- +..+++ -.-.++..||.+...+|+-....-+|||.|-+
T Consensus 4 ~~~~e~lre~l~~le~~~~~-------------~~~e~~-~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 4 GSNYNQLKEDYNTLKRELSD-------------RDDEVK-RLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHH-------------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh-------------hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788899998876633 223333 24566777888888888888888888888876
No 50
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=38.86 E-value=2.3e+02 Score=25.99 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=19.8
Q ss_pred hhhhcccccchHHHHHhHHHHHHHHH
Q 002103 849 MWVNAGKQFSVDQTVSRAQSLVDKLK 874 (966)
Q Consensus 849 ~w~~~~~~~~~~~~~~ra~~l~~klk 874 (966)
-.++-|..+-|+.++.-|..++++=.
T Consensus 72 V~v~lG~g~~vE~~~~eA~~~l~~r~ 97 (133)
T 1fxk_C 72 VIMSVGAGVAIKKNFEDAMESIKSQK 97 (133)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEeeHHHHHHHHHHHH
Confidence 34567888999999999977776533
No 51
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=37.73 E-value=2e+02 Score=33.57 Aligned_cols=43 Identities=16% Similarity=0.037 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHH
Q 002103 769 ERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAK 811 (966)
Q Consensus 769 ~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~ 811 (966)
+.|+++...+..+..+...-..-++.=++.|..++.+++..++
T Consensus 611 ~~l~~~~~~i~~r~~e~~~rp~~~~~~~~~~~~~~~~~~~~~~ 653 (675)
T 3d2f_A 611 EELASLGNIIRGRYLAKEEEKKQAIRSKQEASQMAAMAEKLAA 653 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443444433333333333334444555555666666544
No 52
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=35.20 E-value=31 Score=27.23 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 002103 772 NMLRKEAENENQEIARLQYELE 793 (966)
Q Consensus 772 ~kL~~~~e~~~q~i~~~k~~LE 793 (966)
+||.++++.|.++|.+||.+-+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~ 31 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENK 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhH
Confidence 6899999999999999998644
No 53
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=34.31 E-value=2e+02 Score=26.14 Aligned_cols=57 Identities=18% Similarity=0.346 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002103 657 EELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREV 724 (966)
Q Consensus 657 eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~ 724 (966)
+=...|++|=.|.+++..+ | .+++.+ |..|+.+|. +.|+..++..+|+++++.+-++
T Consensus 14 eLQSALeaEIqAKQ~i~EE--L-s~vr~~-ni~~eskL~-------eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSRE--M-EAIRTD-NQNFASQLR-------EAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH--H-HHHHHH-HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--H-HHHHHH-HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677888888877766 3 555444 356666554 4555666666666666654433
No 54
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=33.16 E-value=3.1e+02 Score=25.68 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HH-HhHHHHHHHHHH---HHHHHHHHhhHHhh-cCcEEEEcCCccccc
Q 002103 771 INMLRKEAENENQEIARLQYELEVERKALSM-AR-AWAEDEAKRARE---QAKALEGARDRWER-QGIKVVVDKDLREES 844 (966)
Q Consensus 771 l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m-aR-~WaEdEA~r~~e---~A~vLEea~~rW~~-~gikv~vd~~~~~~~ 844 (966)
+++|..-++.+.+.+..+..-|+.|+.||.- -. .+.+.=+++.++ +-.-++..|++|.. .|+. .+.
T Consensus 6 ~~~L~~~L~~~~~~l~~L~~lL~~E~~~L~~~~d~~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~--------~~~ 77 (154)
T 3opc_A 6 SAALKSCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLSGAGLA--------SGP 77 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------SHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--------CCh
Confidence 3667788888888888899999999999877 32 233333333333 23345566666653 3432 111
Q ss_pred cccchhhhcccccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Q 002103 845 DAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKK 904 (966)
Q Consensus 845 ~~~~~w~~~~~~~~~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~ 904 (966)
..--.|... ...+.....+...++.+++.+- +.|| .+|..-+.++..+|..|+.
T Consensus 78 ~g~~~~~~~--~~~l~~~w~~l~~l~~~c~~~N-~~Ng---~Li~~~l~~~~~~L~~L~~ 131 (154)
T 3opc_A 78 AGTDAAAAA--HPELGPLWQALQANAAQAREHN-QRNG---TLIAVNLRHTQESLDALRQ 131 (154)
T ss_dssp HHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHh
Confidence 111224432 1244555555566666665542 3333 4566677777777777764
No 55
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=32.68 E-value=4.2e+02 Score=27.06 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhH
Q 002103 688 ESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYE 767 (966)
Q Consensus 688 ~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~E 767 (966)
+||..+...=+.+...++.-|.+-...=..|.++-|+++..+=|.-..+....+ +|+.|++..=.++..-+.+....
T Consensus 13 ~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~---~L~~E~e~~k~K~~~~~~e~~~~ 89 (189)
T 2v71_A 13 AYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQ---RLKYEVEALKEKLEHQYAQSYKQ 89 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002103 768 KERINMLRKEAENENQEIARLQYELEV 794 (966)
Q Consensus 768 k~~l~kL~~~~e~~~q~i~~~k~~LE~ 794 (966)
...|++-...+...++.+..---+||+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 56
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=32.15 E-value=1.3e+02 Score=28.88 Aligned_cols=46 Identities=26% Similarity=0.310 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002103 712 RQELERLRAEREVDKI--ALMKERAAIESEMEILSKLRREVEEQLESLM 758 (966)
Q Consensus 712 ~~eLe~~r~ere~e~~--~llKerAa~e~e~q~L~~Lr~EVde~~q~L~ 758 (966)
.+||+|+|-+.+.-.- +-.|-+--.||+++ +-.+|.+-|.++|.+-
T Consensus 38 ~~ELeRLr~~~d~~~K~HE~kklqLkse~e~E-~ae~k~KYD~~lqe~e 85 (115)
T 3vem_A 38 LHELEKLRRESENSKKTFEEKKSILKAELERK-MAEVQAEFRRKFHEVE 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4667777665554332 33344445566665 6677777777777654
No 57
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=31.75 E-value=6e+02 Score=30.50 Aligned_cols=58 Identities=16% Similarity=0.113 Sum_probs=43.7
Q ss_pred HHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHH
Q 002103 751 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDE 809 (966)
Q Consensus 751 de~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdE 809 (966)
+.|.+.+..-++.=.. +...+||+++.+...+++.+++..|..+.+=..+.+.|.++=
T Consensus 620 e~Qa~aIL~m~L~rLt-~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i 677 (692)
T 2xcs_B 620 EKQAQAILDMRLRRLT-GLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEI 677 (692)
T ss_dssp HHHHHHHHTCBGGGGS-TTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4566666666654333 344678899999999999999999999998888887776643
No 58
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.16 E-value=7.1e+02 Score=29.26 Aligned_cols=24 Identities=8% Similarity=0.347 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 002103 733 RAAIESEMEILSKLRREVEEQLES 756 (966)
Q Consensus 733 rAa~e~e~q~L~~Lr~EVde~~q~ 756 (966)
|..|+.|...+.+|---||-|+..
T Consensus 137 QsnLedq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 137 QKNVRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555566665555555543
No 59
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=30.86 E-value=2.2e+02 Score=26.50 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002103 767 EKERINMLRKEAENENQEIARLQYELE 793 (966)
Q Consensus 767 Ek~~l~kL~~~~e~~~q~i~~~k~~LE 793 (966)
..+.|++|+.+|+.+..+|..+|..|+
T Consensus 52 q~~~le~lk~eL~~~~~el~~lq~~l~ 78 (107)
T 2no2_A 52 QLEVLESLKQELATSQRELQVLQGSLE 78 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888777776554
No 60
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=30.84 E-value=3.1e+02 Score=24.92 Aligned_cols=70 Identities=14% Similarity=0.163 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHH
Q 002103 709 EEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEI 785 (966)
Q Consensus 709 eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i 785 (966)
+..+..|+.+...-..++..+.|++++++.+...|-. .+++|-.+--.|..|...+..-+-+.+.+.+.+
T Consensus 10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~-------E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl 79 (96)
T 3q8t_A 10 QRELKELALEEERLIQELEDVEKNRKVVAENLEKVQA-------EAERLDQEEAQYQREYSEFKRQQLELDDELKSV 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666677778888888888888765543 333343444445555555555555555555544
No 61
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=30.81 E-value=82 Score=31.33 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHH
Q 002103 683 EKEINESFEKELSM 696 (966)
Q Consensus 683 ~~di~~~f~~el~~ 696 (966)
.+++++.|++||..
T Consensus 21 ~~el~~tWeeKl~~ 34 (184)
T 4egx_A 21 IAELNETWEEKLRR 34 (184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHH
Confidence 45788899988764
No 62
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=30.18 E-value=3e+02 Score=25.10 Aligned_cols=74 Identities=15% Similarity=0.251 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHH
Q 002103 721 EREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAEN---ENQEIARLQYELEVERK 797 (966)
Q Consensus 721 ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~---~~q~i~~~k~~LE~Ekk 797 (966)
-|+.....|-+.++++|++...+-.-...--+++|..... =...|..++.+++. +.|.+.+.|--|+.|..
T Consensus 9 ~~~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~------lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 9 SRENLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTD------KEREMAEIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777788888877665544322222233332221 13345566666654 45789999999999977
Q ss_pred HHH
Q 002103 798 ALS 800 (966)
Q Consensus 798 AL~ 800 (966)
+-+
T Consensus 83 tYr 85 (95)
T 3mov_A 83 AYR 85 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 63
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=29.93 E-value=1.7e+02 Score=27.82 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002103 711 ARQELERLRAEREVDKIAL 729 (966)
Q Consensus 711 a~~eLe~~r~ere~e~~~l 729 (966)
.+.||++++.+.......|
T Consensus 27 lk~ele~l~~E~q~~v~ql 45 (120)
T 3i00_A 27 LKAQLENMKTESQRVVLQL 45 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333
No 64
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=29.52 E-value=2.9e+02 Score=26.98 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhhhhhhhh
Q 002103 886 EIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCRE 955 (966)
Q Consensus 886 ~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~~~c~~ 955 (966)
++..++-+....|=..|.+-+.+++.+..-+.+--..+....+.+++....-+...+.++...=++.-|.
T Consensus 71 e~~~~l~~~~~~Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~ 140 (185)
T 3r2p_A 71 EFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQE 140 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3333343433333333333344444444333333344444444455544444444444444444444433
No 65
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=28.89 E-value=2e+02 Score=28.83 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 002103 766 YEKERINMLRKEAENENQEIA 786 (966)
Q Consensus 766 ~Ek~~l~kL~~~~e~~~q~i~ 786 (966)
+++..|.+|.+++...++.+.
T Consensus 110 ~DeakI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 110 PDTAKINAVAKEMESLGQKLD 130 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 566677777766655554443
No 66
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=28.24 E-value=2.9e+02 Score=28.33 Aligned_cols=65 Identities=12% Similarity=0.132 Sum_probs=39.5
Q ss_pred HhccchhhHHHHHHHHHHHHHhhHHHHhhHHHHHHH----------HHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHH
Q 002103 647 AIGEASDAVNEELQRIEAESAAENAVSEHSALVAEV----------EKEINESFEKELSMEREKIDVVE-KMAEEARQ 713 (966)
Q Consensus 647 ~~G~~~e~v~eEL~RlEAE~~a~~av~~~~~l~~~~----------~~di~~~f~~el~~Er~~~~~vE-k~~eea~~ 713 (966)
|.+.......+++.+|.+|+..-.... ..|.+++ +.|+-+-|--=|++-+.||.+.+ +++.+|..
T Consensus 129 ~~~~~~~~~~~~~~~L~~e~~~l~~~~--~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~~ 204 (213)
T 1ik9_A 129 YALDTIAENQAKNEHLQKENERLLRDW--NDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQE 204 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 577777777888888877764332222 2233333 44555566666666777777777 66555544
No 67
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=28.10 E-value=2e+02 Score=29.00 Aligned_cols=64 Identities=13% Similarity=0.189 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcceehhhHHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002103 738 SEMEILSKLRREVEEQLESLMSNKVEISYEKER-----INMLRKEAENENQEIARLQYELEVERKALSM 801 (966)
Q Consensus 738 ~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~-----l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m 801 (966)
..+++|.+|++.+.++++.+.-.-.+..+..+- |.+-..++....+.+.+.+..||.|+..|.+
T Consensus 9 ~~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~ 77 (174)
T 2p22_A 9 NHHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNA 77 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999998887555554444332 2233334444444444444444444444433
No 68
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=27.24 E-value=4e+02 Score=25.07 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=41.1
Q ss_pred HHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHH
Q 002103 862 TVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISN-------LKKWASKASMRAAELKDAT 920 (966)
Q Consensus 862 ~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~-------l~~~~~~~~~~~~~~~~~~ 920 (966)
.+..++.|+.+.+.+..++... ...|..++..-..||.. |+.+..++.++...|...+
T Consensus 137 ~~~~v~~ll~~h~~~~~el~~~-~~~i~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~w~~l~~~~ 201 (213)
T 1cun_A 137 TLAAIQGLLKKHEAFETDFTVH-KDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAA 201 (213)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888888887644 46677777777777763 6777777777776666653
No 69
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=27.20 E-value=4.7e+02 Score=25.88 Aligned_cols=32 Identities=28% Similarity=0.548 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002103 678 LVAEVEKEINESFEKELSMEREKIDVVEKMAEE 710 (966)
Q Consensus 678 l~~~~~~di~~~f~~el~~Er~~~~~vEk~~ee 710 (966)
++++++.|+. +...++.+-++..+-|=||+.+
T Consensus 12 ~ia~L~~D~~-s~~~eleEnqeEL~iVgkML~E 43 (167)
T 4gkw_A 12 EVADLKQDTE-SLQKQLEENQEELEIVGNMLRE 43 (167)
T ss_dssp SHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555553 4444444445555556666544
No 70
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=26.23 E-value=3.3e+02 Score=25.56 Aligned_cols=56 Identities=13% Similarity=0.197 Sum_probs=39.0
Q ss_pred HHHHHHhhhhcc--cchHHHHHHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHhh
Q 002103 870 VDKLKAMANDVS--GKSKEIINTIIHKILLFISNLKKWA-------SKASMRAAELKDATILKAK 925 (966)
Q Consensus 870 ~~klk~m~~~~~--~~~~~~~~~~~~~i~~~i~~l~~~~-------~~~~~~~~~~~~~~~~~~~ 925 (966)
++.|..|.++-+ ....++|..|++-...+|..|++-+ ..+..-+|.||-++.+.-.
T Consensus 27 ~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGssa~lGa 91 (149)
T 1yvi_A 27 FQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLKGSSASVGA 91 (149)
T ss_dssp HHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhHHHHHhH
Confidence 678888865554 6778999999999999999888765 3445566777766555433
No 71
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=26.10 E-value=4.5e+02 Score=25.38 Aligned_cols=52 Identities=31% Similarity=0.387 Sum_probs=36.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHH
Q 002103 722 REVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKE 777 (966)
Q Consensus 722 re~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~ 777 (966)
|..-.+.+-..+.-+..+.+++..+..++.+.|..+..+ -+ | ++-|.+|..+
T Consensus 58 r~~s~a~le~r~~~L~ar~eli~~v~~~a~~~L~~~~~~-~~--Y-~~~L~~Li~e 109 (187)
T 3v6i_A 58 RAESAGELLVATARTQARGEVLEEVRRRVREALEALPQK-PE--W-PEVVRKLALE 109 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGS-TT--H-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-cc--H-HHHHHHHHHH
Confidence 444445555666677888899999999999999998876 12 2 4566666655
No 72
>2lse_A Four helix bundle protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=31.88 E-value=14 Score=33.39 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 002103 740 MEILSKLRREVEEQLESLM 758 (966)
Q Consensus 740 ~q~L~~Lr~EVde~~q~L~ 758 (966)
+.++-+.|.|++.||..--
T Consensus 48 knmiekfrdemeqmykdap 66 (101)
T 2lse_A 48 KNMIEKFRDEMEQMYKDAP 66 (101)
Confidence 4566678888888876543
No 73
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=25.72 E-value=1.6e+02 Score=26.30 Aligned_cols=48 Identities=17% Similarity=0.175 Sum_probs=32.0
Q ss_pred HHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002103 752 EQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKAL 799 (966)
Q Consensus 752 e~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL 799 (966)
.|++.+..++..+.-|.++++....+...|.+.=..++..+|.+..+|
T Consensus 7 ~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~L 54 (86)
T 3swk_A 7 RQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSF 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777777777766666666666665544
No 74
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=25.43 E-value=2.5e+02 Score=27.70 Aligned_cols=103 Identities=9% Similarity=0.120 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHhhcCcEEE-EcCCcccccccc
Q 002103 769 ERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVV-VDKDLREESDAA 847 (966)
Q Consensus 769 ~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~rW~~~gikv~-vd~~~~~~~~~~ 847 (966)
+-++--..++-.-+.++.++...+..|+.++ ..|...+++..+++.+.|+.+-..|-...-.-- -..-..+-....
T Consensus 16 ~~~~~alr~ia~l~r~~~~i~~~~n~eI~~i---k~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~elf~k~Kt~~l~~G~ 92 (171)
T 2p2u_A 16 RQAEGALAEIATIDRKVGEIEAQMNEAIDAA---KARASQKSAPLLARRKELEDGVATFATLNKTEMFKDRKSLDLGFGT 92 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC---CCBCSSCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCCCeEEEeCCEE
Confidence 3355566666666677777777777777664 689999999999999999999999986542100 022233444577
Q ss_pred chhhhcccccchHHHHHhHHHHHHHHHHh
Q 002103 848 VMWVNAGKQFSVDQTVSRAQSLVDKLKAM 876 (966)
Q Consensus 848 ~~w~~~~~~~~~~~~~~ra~~l~~klk~m 876 (966)
+.|+.......+.+. -.+.||+.||.+
T Consensus 93 v~~R~~~~~v~~~~~--~~~~vle~Lk~~ 119 (171)
T 2p2u_A 93 IGFRLSTQIVQMSKI--TKDMTLERLRQF 119 (171)
T ss_dssp CCCCCCCCCCCCTTC--CHHHHHHHHHHT
T ss_pred EEEEeCCCccccccC--CHHHHHHHHHHC
Confidence 889987765543111 236777777775
No 75
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=25.14 E-value=5.3e+02 Score=25.80 Aligned_cols=55 Identities=9% Similarity=0.125 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHh
Q 002103 770 RINMLRKEAENENQEIARLQYELEVERKALSMA-RAWAEDEAKRAREQAKALEGAR 824 (966)
Q Consensus 770 ~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ma-R~WaEdEA~r~~e~A~vLEea~ 824 (966)
.++|++.+.+...+.+...+.+...-..++.-. |.--+.+....-..=.-||+-|
T Consensus 173 ~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~lQ~le~~r 228 (305)
T 2efl_A 173 DVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEERR 228 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666665555554444444444443 3323333333333333444433
No 76
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=24.90 E-value=1.7e+02 Score=26.61 Aligned_cols=51 Identities=25% Similarity=0.310 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHH-HHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002103 741 EILSKLRREVEEQL-ESLMSNKVEISYEKERINMLRKEAENENQEIARLQYEL 792 (966)
Q Consensus 741 q~L~~Lr~EVde~~-q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~L 792 (966)
|.+..||.-|.||= ++|-.++ ..-.=|+-|.-|+..++.+..+|.+++.+|
T Consensus 26 qEi~~Lr~kv~elEnErlQyEk-KLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEW-KLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44555565555541 2222221 111223678888888999999999988876
No 77
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=24.51 E-value=8.9e+02 Score=28.25 Aligned_cols=37 Identities=14% Similarity=0.255 Sum_probs=22.8
Q ss_pred CCCCCCcHHHHHHHHHhccchhhHHHHHHHHHHHHHhhHHHHhhHHHH
Q 002103 632 QPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALV 679 (966)
Q Consensus 632 QPnKPVTRAEAAAaL~~G~~~e~v~eEL~RlEAE~~a~~av~~~~~l~ 679 (966)
-|-+|+..+|=. +..-|..||.|.--+.+-..|++-+
T Consensus 83 ~~pDPLsPgE~~-----------~~~Kl~eLE~e~k~d~~~~khn~~I 119 (526)
T 3iyk_A 83 EIPDPLSPGERG-----------IQAKLKELEDEQRNELVRLKYNDKI 119 (526)
T ss_pred CCCCCCCHhHHH-----------HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 377788887754 4455667777766555555554433
No 78
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=24.07 E-value=2.9e+02 Score=22.37 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 002103 884 SKEIINTIIHKILLFISNLKKWASK 908 (966)
Q Consensus 884 ~~~~~~~~~~~i~~~i~~l~~~~~~ 908 (966)
..+=|..+...+..++..|++...+
T Consensus 35 ~~dEi~~l~~~~n~m~~~l~~~~~~ 59 (115)
T 3zrx_A 35 RADEIGILAKSIERLRRSLKQLADD 59 (115)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554444
No 79
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=24.05 E-value=27 Score=30.93 Aligned_cols=11 Identities=36% Similarity=0.758 Sum_probs=9.0
Q ss_pred cccchhhHHHH
Q 002103 97 IVQAGVAGVVL 107 (966)
Q Consensus 97 ~v~~gvagv~l 107 (966)
|||||.||..+
T Consensus 7 IIGaGpaGL~a 17 (336)
T 3kkj_A 7 IIGTGIAGLSA 17 (336)
T ss_dssp EECCSHHHHHH
T ss_pred EECcCHHHHHH
Confidence 69999998653
No 80
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.04 E-value=4.4e+02 Score=24.53 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 002103 744 SKLRREVEEQLESLMSNK 761 (966)
Q Consensus 744 ~~Lr~EVde~~q~L~s~k 761 (966)
..+..||++..-.|-.+=
T Consensus 50 ~~ie~ElEeLTasLFeEA 67 (97)
T 2eqb_B 50 DKLNKEVEDLTASLFDEA 67 (97)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666666665543
No 81
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=23.81 E-value=1.8e+02 Score=23.76 Aligned_cols=42 Identities=26% Similarity=0.413 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 002103 654 AVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKID 702 (966)
Q Consensus 654 ~v~eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~ 702 (966)
.+..|++.||.|+-.-+--.-| .+|+-+|.++|+..=|.+++
T Consensus 7 qlenevaslenenetlkkknlh-------kkdliaylekeianlrkkie 48 (49)
T 3he5_A 7 QLENEVASLENENETLKKKNLH-------KKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcccHHHHHhccc-------HHHHHHHHHHHHHHHHHHhc
Confidence 3556777777777443332222 57777888877776666654
No 82
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=23.70 E-value=4.1e+02 Score=25.75 Aligned_cols=105 Identities=16% Similarity=0.220 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhhHH-HHHHHHHHHHH
Q 002103 701 IDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEK-ERINMLRKEAE 779 (966)
Q Consensus 701 ~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek-~~l~kL~~~~e 779 (966)
.+.+|.|++.|-++|+=..-.=|.|...-.-+-|+-+.=..+|.+|+ -|.+-|+.|-..=-.|+.|| +-+.+.+.-+.
T Consensus 7 vdkLe~mFqKA~sDLdyiq~RLe~Ef~~~~Pd~A~e~NPv~Ll~~Ls-aIk~ry~~L~~q~~~iaaeQke~~d~ir~tL~ 85 (123)
T 4aj5_K 7 VDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELS-VIKSRYQTLYARFKPVAVEQKESKSRICATVK 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHhCCccccccChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777775554444443322222232222233333332 23333444443333566666 66666666666
Q ss_pred HHHHHHHHHhHHH--------HHHHHHHHHHHHhH
Q 002103 780 NENQEIARLQYEL--------EVERKALSMARAWA 806 (966)
Q Consensus 780 ~~~q~i~~~k~~L--------E~EkkAL~maR~Wa 806 (966)
.-..-|-++|... |.|+.|...|++..
T Consensus 86 ~tm~miQ~LQ~~td~el~plteeE~~a~~~l~~~~ 120 (123)
T 4aj5_K 86 KTMNMIQKLQKQTDLELSPLTKEEKTAAEQFKFHM 120 (123)
T ss_dssp HHHHHHHHHHHHHCCCCCCCHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhhC
Confidence 5555555555443 56677766666544
No 83
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=23.68 E-value=7.8e+02 Score=27.26 Aligned_cols=136 Identities=13% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHH-----------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002103 661 RIEAESAAENAVSEHSALVAEVEKEINESFEKE-----------LSMEREKIDVVEKMAEEARQELERLRAEREVDKIAL 729 (966)
Q Consensus 661 RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~e-----------l~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~l 729 (966)
+-+.|++|+.-..--..|..++..+++.+=.+. -+.-..-...++|.++....+|++.|..=+..-.+.
T Consensus 87 ~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~K~~~~~~kerK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~ 166 (486)
T 3haj_A 87 MSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEE 166 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhHHHHH-------HHHHHHHHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002103 730 MKERAAIESE-------MEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVER 796 (966)
Q Consensus 730 lKerAa~e~e-------~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ek 796 (966)
-+-++..+.- ...+.+++..++...+.+..-+-+|..=-+.+++.+.+.+.+...+.+.=..||.||
T Consensus 167 e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeR 240 (486)
T 3haj_A 167 KLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKR 240 (486)
T ss_dssp HHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 84
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=23.46 E-value=2.5e+02 Score=32.33 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=42.9
Q ss_pred HHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHH
Q 002103 751 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAED 808 (966)
Q Consensus 751 de~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEd 808 (966)
+.|.+.|..-++-=.. +...+||.++.....+++.+++..|..+.+-..+.+.+.++
T Consensus 413 e~qa~~IL~m~L~rLt-~~e~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ 469 (496)
T 2nov_A 413 EEQAEAIVTLQLYRLT-NTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELRE 469 (496)
T ss_dssp HHHHHHHHTCBGGGGS-SHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566666665553332 44578899999999999999999999998888887777654
No 85
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=23.01 E-value=1.1e+02 Score=26.50 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=38.8
Q ss_pred HHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHH
Q 002103 862 TVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISN-------LKKWASKASMRAAELKDAT 920 (966)
Q Consensus 862 ~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~-------l~~~~~~~~~~~~~~~~~~ 920 (966)
.+..++.|+.|.+.+-.++... .+-|..|++.-..||.. |+++..++..+...|++.+
T Consensus 34 ~l~~v~~Llkkh~~fe~~~~~~-~~~i~~l~~~a~~L~~~~h~~~~~I~~r~~~l~~~w~~L~~~~ 98 (107)
T 2spc_A 34 AGGNVEALIKKHEDFDKAINGH-EQKIAALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGL 98 (107)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888888877643 45666677766777654 6666666666666666554
No 86
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.00 E-value=3e+02 Score=30.29 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=41.1
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHhhcCcEEEE
Q 002103 762 VEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVV 836 (966)
Q Consensus 762 vei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~rW~~~gikv~v 836 (966)
.++...++.|.+|+.+++...+.+.+++.+++.-++ -..++|..|.+-|-.+.|- +..|+|+|
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~rr~l~n~~~el------kgnIrV~v 65 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNE------ILIKEETVRRTLHNELQEL------RGNIRVYL 65 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH------HCSEEEEE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHc------CCCeEEEE
Confidence 345666777777877777777777777766654433 2345666666667666664 56788886
No 87
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=22.59 E-value=3.1e+02 Score=26.07 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=10.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 002103 731 KERAAIESEMEILSKLRREVEE 752 (966)
Q Consensus 731 KerAa~e~e~q~L~~Lr~EVde 752 (966)
|.+|.+||+ .||.|+++
T Consensus 63 ~q~a~~e~e-----~Lr~e~~~ 79 (120)
T 3i00_A 63 RQQAADDCE-----FLRAELDE 79 (120)
T ss_dssp HHHHHHHHH-----HHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHH
Confidence 555666665 56666664
No 88
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=22.22 E-value=2.4e+02 Score=28.87 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=27.2
Q ss_pred HhhhhHHHHHHhHHHHhhhhcccchhhhhhhhhhHHhhhhhc
Q 002103 923 KAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRF 964 (966)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~kr~~~~c~~gv~k~~~rf 964 (966)
+....+.+++..+..+...++.+---++++.+..+..+.+.|
T Consensus 195 kl~~~~e~lr~~l~p~~e~lk~~l~p~~e~~~~~l~~~~e~~ 236 (243)
T 2a01_A 195 KATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEY 236 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344456667777777777777777777777777666555544
No 89
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=21.58 E-value=6.4e+02 Score=25.69 Aligned_cols=42 Identities=7% Similarity=0.082 Sum_probs=25.4
Q ss_pred hhhhHHHHHHhHHHHhhhhcccchhhhhhhhhhHHhhhhhcc
Q 002103 924 AKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFK 965 (966)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~kr~~~~c~~gv~k~~~rfk 965 (966)
+.+.+.+++..+......+.+.....+++-|..+.-+++.+|
T Consensus 174 l~~~~~el~~~l~p~~~e~~~kl~~~~e~lr~~l~p~~e~lk 215 (243)
T 2a01_A 174 LAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLR 215 (243)
T ss_dssp HHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445566666665555555666666666666666666555554
No 90
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.15 E-value=3.2e+02 Score=24.92 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=24.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHh
Q 002103 781 ENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWE 828 (966)
Q Consensus 781 ~~q~i~~~k~~LE~EkkAL~maR~WaEdEA~r~~e~A~vLEea~~rW~ 828 (966)
+.++..+-.|.-.-|++.|.-||.=.++|-..-++.-+-||++-.|++
T Consensus 24 KrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk 71 (84)
T 1gmj_A 24 KREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHK 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555555555555555544
No 91
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=21.03 E-value=30 Score=27.12 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=11.4
Q ss_pred ccccchhhHHHHHhhhhH
Q 002103 96 GIVQAGVAGVVLFAGLTF 113 (966)
Q Consensus 96 g~v~~gvagv~l~~gl~f 113 (966)
|+|=..|+|++|+++|.|
T Consensus 15 GiVvG~v~gv~li~~l~~ 32 (38)
T 2k1k_A 15 AVIFGLLLGAALLLGILV 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 343345677777777766
No 92
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=20.75 E-value=1.8e+02 Score=28.92 Aligned_cols=31 Identities=39% Similarity=0.368 Sum_probs=15.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002103 729 LMKERAAIESEMEILSKLRREVEEQLESLMS 759 (966)
Q Consensus 729 llKerAa~e~e~q~L~~Lr~EVde~~q~L~s 759 (966)
|.+++..+....+.....+.+|+..++.|..
T Consensus 64 le~~~~~l~rdleasr~akk~~ea~la~l~~ 94 (146)
T 2xnx_M 64 LEKELEAITREQEINRNLLGNAKLELDQLSS 94 (146)
T ss_dssp HTTTTTTHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 3344455555555555555555555555443
No 93
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=20.71 E-value=2.9e+02 Score=24.45 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=22.6
Q ss_pred HHHHhHHHHHHHHHHhhh--hcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 002103 861 QTVSRAQSLVDKLKAMAN--DVSGKSKEIINTIIHKILLFISNLKKWAS 907 (966)
Q Consensus 861 ~~~~ra~~l~~klk~m~~--~~~~~~~~~~~~~~~~i~~~i~~l~~~~~ 907 (966)
++-|.|++++-.++..-. +...+. -..-..+|...|..|++|+.
T Consensus 4 EarN~aE~~iy~~e~~L~~~e~~~kl---~~~ek~~i~~~i~~l~~~L~ 49 (113)
T 1ud0_A 4 RGSHMLESYAFNMKATVEDEKLQGKI---NDEDKQKILDKCNEIISWLD 49 (113)
T ss_dssp CCHHHHHHHHHHHHHHHTSGGGTTTS---CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhhhccC---CHHHHHHHHHHHHHHHHHHH
Confidence 455677777776665443 333221 12223445555566666653
No 94
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=20.64 E-value=1.1e+03 Score=27.66 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=13.5
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 002103 782 NQEIARLQYELEVERKALS 800 (966)
Q Consensus 782 ~q~i~~~k~~LE~EkkAL~ 800 (966)
.+.+.-|+.-+|+||+||.
T Consensus 195 r~k~~aL~~aIe~Er~~~~ 213 (526)
T 3iyk_A 195 RDKIDALKNAIEVERDGMQ 213 (526)
T ss_pred HHHHHHHHHHHHHHHhHHH
Confidence 3445567778888988874
No 95
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=20.17 E-value=4.4e+02 Score=23.09 Aligned_cols=32 Identities=19% Similarity=0.408 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHH
Q 002103 769 ERINMLRKEAEN---ENQEIARLQYELEVERKALS 800 (966)
Q Consensus 769 ~~l~kL~~~~e~---~~q~i~~~k~~LE~EkkAL~ 800 (966)
..|++++.+++. +.|.+.++|--||.|..+-+
T Consensus 40 ~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYR 74 (84)
T 1gk4_A 40 DEIQNMKEEMARHLREYQDLLNVKMALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 456666777664 56789999999999987654
No 96
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=20.09 E-value=5e+02 Score=24.68 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=15.2
Q ss_pred cchHHHHHhHHHHHHHHHHhhhhcc
Q 002103 857 FSVDQTVSRAQSLVDKLKAMANDVS 881 (966)
Q Consensus 857 ~~~~~~~~ra~~l~~klk~m~~~~~ 881 (966)
-.|.++|++++.|..+-..+...-+
T Consensus 34 ~EVq~sl~~l~~l~~~w~~l~~~~~ 58 (130)
T 4dnd_A 34 GEVQKAVNTARGLYQRWCELLQESA 58 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3677888888888887766655444
Done!