Query 002103
Match_columns 966
No_of_seqs 131 out of 172
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 12:29:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002103.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/002103hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gs9a_ a.24.1.1 (A:) Apolipop 52.0 8.7 0.00063 34.0 5.4 23 858-880 4-26 (144)
2 d1gs9a_ a.24.1.1 (A:) Apolipop 31.8 23 0.0017 31.1 4.7 79 865-943 42-124 (144)
3 d1y74a1 a.194.1.1 (A:17-73) Li 29.1 38 0.0028 27.0 5.0 44 858-904 2-45 (57)
4 d2efla1 a.238.1.4 (A:1-288) Fo 26.3 2.1E+02 0.016 25.5 21.3 55 768-822 166-221 (288)
5 d1gqea_ e.38.1.1 (A:) Polypept 26.2 2.2E+02 0.016 28.6 11.8 30 726-755 50-79 (362)
6 d1f5na1 a.114.1.1 (A:284-583) 25.7 2.3E+02 0.017 25.6 13.7 95 660-757 204-300 (300)
7 d2fupa1 a.47.5.1 (A:1-130) Hyp 24.4 1.4E+02 0.01 25.0 8.5 53 817-876 54-107 (130)
8 d1c0pa1 c.4.1.2 (A:999-1193,A: 23.7 10 0.00074 33.3 0.7 19 97-122 11-29 (268)
9 d2dw4a2 c.3.1.2 (A:274-654,A:7 22.9 11 0.00079 32.7 0.8 18 97-121 10-27 (449)
10 d1lvfa_ a.47.2.1 (A:) Syntaxin 22.0 2.1E+02 0.015 23.9 10.1 52 857-908 9-60 (106)
11 d1qvra2 c.37.1.20 (A:149-535) 21.2 3E+02 0.022 27.6 11.7 126 628-762 225-368 (387)
No 1
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=51.95 E-value=8.7 Score=33.98 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=14.8
Q ss_pred chHHHHHhHHHHHHHHHHhhhhc
Q 002103 858 SVDQTVSRAQSLVDKLKAMANDV 880 (966)
Q Consensus 858 ~~~~~~~ra~~l~~klk~m~~~~ 880 (966)
.+++++++.-+-+++++.++.++
T Consensus 4 ~~e~~~d~f~~y~~~l~~~a~~~ 26 (144)
T d1gs9a_ 4 RWELALGRFWDYLRWVQTLSEQV 26 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHH
Confidence 35666666666666666666554
No 2
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=31.80 E-value=23 Score=31.14 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHhhhhcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhh
Q 002103 865 RAQSLVDKLKAMANDVS----GKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRS 940 (966)
Q Consensus 865 ra~~l~~klk~m~~~~~----~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 940 (966)
+...+++++.....+++ --+.++-.++.+.+..|=..|...+.+++.+....-+-...++...+.+++..+.....
T Consensus 42 ~l~e~~~~l~~~~~~l~~~l~p~~~e~~~~l~~~~e~lr~~l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~e 121 (144)
T d1gs9a_ 42 LMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLR 121 (144)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555443333 33334444444444444444444444444444333333333444444555555544443
Q ss_pred hhc
Q 002103 941 NLT 943 (966)
Q Consensus 941 ~~~ 943 (966)
.+.
T Consensus 122 el~ 124 (144)
T d1gs9a_ 122 KLR 124 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 3
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.09 E-value=38 Score=27.00 Aligned_cols=44 Identities=18% Similarity=0.453 Sum_probs=30.4
Q ss_pred chHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Q 002103 858 SVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKK 904 (966)
Q Consensus 858 ~~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~ 904 (966)
.++.-|+||-.|+|||+. .+.+..--...|.+|.| ..|...+||
T Consensus 2 ~L~rDv~RaieLle~LQ~-~gevp~~KL~aLqkVLq--SdF~~avRE 45 (57)
T d1y74a1 2 GLERDVSRAVELLERLQR-SGELPPQKLQALQRVLQ--SRFCSAIRE 45 (57)
T ss_dssp CHHHHHHHHHHHHHHHHH-HTCSCHHHHHHHHHHHH--SHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH-cCCCChHHHHHHHHHHH--HHHHHHHHH
Confidence 467789999999999987 56666555666666655 345555554
No 4
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.34 E-value=2.1e+02 Score=25.50 Aligned_cols=55 Identities=9% Similarity=0.125 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Q 002103 768 KERINMLRKEAENENQEIARLQYELEVERKALSMAR-AWAEDEAKRAREQAKALEG 822 (966)
Q Consensus 768 k~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~maR-~WaEdEA~r~~e~A~vLEe 822 (966)
+..++|+....+...+.+.+++.++..-..++..+| .|-+.+....-..-.-||+
T Consensus 166 ~~~~~K~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~~q~~e~ 221 (288)
T d2efla1 166 KADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEE 221 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888877777777766666665553 4545444444444444444
No 5
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=26.21 E-value=2.2e+02 Score=28.63 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=25.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002103 726 KIALMKERAAIESEMEILSKLRREVEEQLE 755 (966)
Q Consensus 726 ~~~llKerAa~e~e~q~L~~Lr~EVde~~q 755 (966)
...++||++.++...+.+..|+..+++.-+
T Consensus 50 Aqkl~KE~s~L~~iVe~~~~l~~~leDl~e 79 (362)
T d1gqea_ 50 AQALGKERSSLEAVVDTLDQMKQGLEDVSG 79 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999988877644
No 6
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.67 E-value=2.3e+02 Score=25.61 Aligned_cols=95 Identities=15% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--H
Q 002103 660 QRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAI--E 737 (966)
Q Consensus 660 ~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~--e 737 (966)
..++.+.........+...+.+......+.++.. ++.....+.++-+....|.+++..+++......++++..+ +
T Consensus 204 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~e~~---~~~~ee~~~~l~~~~e~e~~~~~~e~~~~~~~~~~e~~~~~~~ 280 (300)
T d1f5na1 204 KEIEVERVKAESAQASAKMLHEMQRKNEQMMEQK---ERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKE 280 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 002103 738 SEMEILSKLRREVEEQLESL 757 (966)
Q Consensus 738 ~e~q~L~~Lr~EVde~~q~L 757 (966)
.-.+....|+.|++.+=++|
T Consensus 281 ~~~~~~~~l~~ei~~Lk~~l 300 (300)
T d1f5na1 281 GFQKESRIMKNEIQDLQTKM 300 (300)
T ss_dssp TCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcC
No 7
>d2fupa1 a.47.5.1 (A:1-130) Hypothetical protein PA3352 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=24.42 E-value=1.4e+02 Score=24.95 Aligned_cols=53 Identities=8% Similarity=0.055 Sum_probs=24.4
Q ss_pred HHHHHHHhhHHhhcCcEEEEcCCccccccccchhhhccc-ccchHHHHHhHHHHHHHHHHh
Q 002103 817 AKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNAGK-QFSVDQTVSRAQSLVDKLKAM 876 (966)
Q Consensus 817 A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w~~~~~-~~~~~~~~~ra~~l~~klk~m 876 (966)
...++++|++|-+. -++..+...-..|..... ...+....++-..++.++|.+
T Consensus 54 l~~~~~~R~~~l~~-------~g~~~~~~~~~~l~~~~~~~~~l~~~~~~L~~l~~~~k~~ 107 (130)
T d2fupa1 54 LERNGRARAEILRE-------AGVSLDREGLARYARERADGAELLARGDELGELLERCQQA 107 (130)
T ss_dssp HHHHHHHHHHHHHH-------TTCCSSHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------cCCCCCcchHHHHhhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777644 233333333333443321 122444444455555555543
No 8
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Probab=23.69 E-value=10 Score=33.30 Aligned_cols=19 Identities=32% Similarity=0.639 Sum_probs=15.3
Q ss_pred cccchhhHHHHHhhhhHHhhhccccc
Q 002103 97 IVQAGVAGVVLFAGLTFAALSLSKRS 122 (966)
Q Consensus 97 ~v~~gvagv~l~~gl~faa~s~sk~~ 122 (966)
|||||+||+ .+|+.|++|.
T Consensus 11 VIGaGiaGl-------~~A~~L~~~G 29 (268)
T d1c0pa1 11 VLGSGVIGL-------SSALILARKG 29 (268)
T ss_dssp EECCSHHHH-------HHHHHHHHTT
T ss_pred EECccHHHH-------HHHHHHHHCC
Confidence 599999986 4788888864
No 9
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.95 E-value=11 Score=32.73 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=12.5
Q ss_pred cccchhhHHHHHhhhhHHhhhcccc
Q 002103 97 IVQAGVAGVVLFAGLTFAALSLSKR 121 (966)
Q Consensus 97 ~v~~gvagv~l~~gl~faa~s~sk~ 121 (966)
|||||+||. .||.-|.|+
T Consensus 10 VIGaG~aGL-------~aA~~L~~~ 27 (449)
T d2dw4a2 10 IIGSGVSGL-------AAARQLQSF 27 (449)
T ss_dssp EECCBHHHH-------HHHHHHHHT
T ss_pred EECCCHHHH-------HHHHHHHhC
Confidence 699998874 356666654
No 10
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=22.03 E-value=2.1e+02 Score=23.88 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=34.2
Q ss_pred cchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002103 857 FSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASK 908 (966)
Q Consensus 857 ~~~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~ 908 (966)
-.|.+.++++++|..+...+-....+-..+-+......++.-|..|+..+..
T Consensus 9 ~EVq~s~~~~~~l~~~w~~~~~~~~~~~~~e~~~~~~eL~~~l~siewdL~d 60 (106)
T d1lvfa_ 9 GEVQKAVNTAQGLFQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDLED 60 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3688899999999999888877666655554444444444444444444433
No 11
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=21.23 E-value=3e+02 Score=27.61 Aligned_cols=126 Identities=24% Similarity=0.270 Sum_probs=0.0
Q ss_pred CCccCCCCCCcHHHHHHHHHhccch------hhHHHHHHHHHHHHHhh------------HHHHhhHHHHHHHHHHHHHH
Q 002103 628 TRLFQPDKPVTNAQAAVALAIGEAS------DAVNEELQRIEAESAAE------------NAVSEHSALVAEVEKEINES 689 (966)
Q Consensus 628 T~~FQPnKPVTRAEAAAaL~~G~~~------e~v~eEL~RlEAE~~a~------------~av~~~~~l~~~~~~di~~~ 689 (966)
..+|-|+|.+--=+.|++-..-... +.+..++..++.|..+- .....+.+.+.+-.+.+++.
T Consensus 225 ~~r~~PdKAidlld~a~a~~~i~~~s~P~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~ 304 (387)
T d1qvra2 225 TERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAE 304 (387)
T ss_dssp CSSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccChhhHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcce
Q 002103 690 FEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKV 762 (966)
Q Consensus 690 f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kv 762 (966)
|..+ +.--+.+.++.+.++.++.++++......-+++..|+.-. +-.|+.|++.....+...+.
T Consensus 305 w~~e-k~~l~~i~~Lk~~Le~lr~~le~A~r~gd~e~AaeL~y~~--------ip~le~el~~l~~~~~~~~l 368 (387)
T d1qvra2 305 WERE-REILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGE--------LPKLEAEVEALSEKLRGARF 368 (387)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTH--------HHHHHHHHHHHHHHSSSCSS
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhch--------HHHHHHHHHHHHHHhcCCCC
Done!