BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002104
(966 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/334 (41%), Positives = 194/334 (58%), Gaps = 10/334 (2%)
Query: 99 SKGNIRVFCRIRPISM--GENFGRLRPV-IAKDSSNVLLKLADNKSKNYSFDKVFHPGSS 155
SKGNIRV R+RP++ GE V D +++ L K ++ DKVF P +S
Sbjct: 2 SKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQAS 61
Query: 156 QDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME 215
Q +VF EV+ ++ S +DG+N CIFAYGQTG GK++TMEGT ++PGI RA++ +F + E
Sbjct: 62 QQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQE 121
Query: 216 --SNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQV 273
S+ + I+ S EIY L+DLL +P + + + + + G + + L QV
Sbjct: 122 KASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLE-----IRLCPDGSGQLYVPGLTEFQV 176
Query: 274 NDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNKIWLVDLG 333
+ +++ G H ++ +++ D R K+ LVDL
Sbjct: 177 QSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLA 236
Query: 334 GSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGED 393
GSERV K+ A G RL E + IN SLSALGDVI AL+ R+ HVP+RNSKLT +L+DSL D
Sbjct: 237 GSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGD 296
Query: 394 SKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 427
SKTLM+V VSP E + ET+ SL FA RV+SV L
Sbjct: 297 SKTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 235 bits (599), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 123/331 (37%), Positives = 195/331 (58%), Gaps = 8/331 (2%)
Query: 98 DSKGNIRVFCRIRPISMGENFGRLRPVI-AKDSSNVLLKLADNKSKNYSFDKVFHPGSSQ 156
D KG IRV+CR+RP+ E + R I + D V D+K+K + +D+VF ++Q
Sbjct: 2 DMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQ 61
Query: 157 DEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMES 216
D+VF + + +++S +DGYN CIFAYGQTG+GK+FT+ G +PG+ PRA+ +F+ +
Sbjct: 62 DDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKD 121
Query: 217 NHAFRISFS--MLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVN 274
++ F S M+E+Y +L DLL+ + K L I + KG + ++N+ + ++
Sbjct: 122 SNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLK-----LDIKKDSKGMVSVENVTVVSIS 176
Query: 275 DFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNKIWLVDLGG 334
+ + + + G H ++ + I + + + K+ VDL G
Sbjct: 177 TYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAG 236
Query: 335 SERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDS 394
SERV K+ + G +L E ++IN SLSALGDVI AL +H+PYRN KLT ++ DSLG ++
Sbjct: 237 SERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNA 296
Query: 395 KTLMLVHVSPKEDDLCETICSLNFATRVKSV 425
KTLM V++SP E +L ET SL +A+RV+S+
Sbjct: 297 KTLMFVNISPAESNLDETHNSLTYASRVRSI 327
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 234 bits (598), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/378 (36%), Positives = 213/378 (56%), Gaps = 15/378 (3%)
Query: 89 RRQILNEFLDSKGNIRVFCRIRPISMGENFGRLRPVIAK-DSSNVLLKLADNKSKNYSFD 147
R++ N D KG IRV+CRIRP++ E+ R + ++ D V D+K K + +D
Sbjct: 1 RKRYYNTIEDMKGKIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKRKQHIYD 60
Query: 148 KVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIE 207
+VF +SQD++F + + +++S +DGYN CIFAYGQTG+GK+FT+ G +PG+ PRA +
Sbjct: 61 RVFDMRASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATK 120
Query: 208 AIFKQAMESNHAFRISFS--MLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEI 265
+F + F S M+E+Y +L DLL+ + + L I + KG + +
Sbjct: 121 ELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLK-----LEIKKDSKGMVFV 175
Query: 266 DNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKN 325
+N+ TI ++ + + G H ++ + I D + +
Sbjct: 176 ENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQSAARG 235
Query: 326 KIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQV 385
K+ VDL GSERV K+ + G +L E ++IN SLSALGDVI AL +H+PYRN KLT +
Sbjct: 236 KLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHKLTML 295
Query: 386 LKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDSNEARDQKEVSMKN 445
+ DSLG ++KTLM V+VSP E +L ET SL +A+RV+++ ++ S ++ V +K
Sbjct: 296 MSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTI--VNDPSKHISSKEMVRLKK 353
Query: 446 L-----QQKMKKIEEERL 458
L +Q KK EEE L
Sbjct: 354 LVAYWKEQAGKKGEEEDL 371
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 216 bits (551), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 192/365 (52%), Gaps = 22/365 (6%)
Query: 72 KDELATLSACINQL---NIQRRQILNEFLDSKGNIRVFCRIRPISMGENFGRLRPVIAKD 128
+ + A L C QL N++R+++ N +D +GNIRVFCRIRP E D
Sbjct: 35 EQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHD 94
Query: 129 SSNVLLKLADNKSKN------YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYG 182
S V L+ D ++K+ +SFD+VFHP SSQ ++F V P+I+S LDGYN CIFAYG
Sbjct: 95 ESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYG 154
Query: 183 QTGTGKSFTMEGTPDSPGIVPRAIEAIF---KQAMESNHAFRISFSMLEIYLGSLKDLLV 239
QTG+GK++TM+G P+S G++PR ++ +F + + I + LEIY L DLL
Sbjct: 155 QTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS 214
Query: 240 TQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXX 299
+ + + K I + N+ V D N L
Sbjct: 215 NEQKDME------IRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNE 268
Query: 300 XXXXXHCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLS 359
H + ++ + A ++ I LVDL GSE + R+ E K IN SLS
Sbjct: 269 RSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLS 324
Query: 360 ALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFA 419
L +VI AL +++ H+PYRNSKLT +L SLG +SKTLM ++VSP +D E++ SL FA
Sbjct: 325 ELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 384
Query: 420 TRVKS 424
V S
Sbjct: 385 ASVNS 389
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 216 bits (551), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 135/368 (36%), Positives = 193/368 (52%), Gaps = 22/368 (5%)
Query: 72 KDELATLSACINQL---NIQRRQILNEFLDSKGNIRVFCRIRPISMGENFGRLRPVIAKD 128
+ + A L C QL N++R+++ N +D +GNIRVFCRIRP E D
Sbjct: 21 EQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHD 80
Query: 129 SSNVLLKLADNKSKN------YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYG 182
S V L+ D ++K+ +SFD+VFHP SSQ ++F V P+I+S LDGYN CIFAYG
Sbjct: 81 ESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYG 140
Query: 183 QTGTGKSFTMEGTPDSPGIVPRAIEAIF---KQAMESNHAFRISFSMLEIYLGSLKDLLV 239
QTG+GK++TM+G P+S G++PR ++ +F + + I + LEIY L DLL
Sbjct: 141 QTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS 200
Query: 240 TQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXX 299
+ + + K I + N+ V D N L
Sbjct: 201 NEQKDME------IRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNE 254
Query: 300 XXXXXHCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLS 359
H + ++ + A ++ I LVDL GSE + R+ E K IN SLS
Sbjct: 255 RSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLS 310
Query: 360 ALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFA 419
L +VI AL +++ H+PYRNSKLT +L SLG +SKTLM ++VSP +D E++ SL FA
Sbjct: 311 ELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 370
Query: 420 TRVKSVHL 427
V S +
Sbjct: 371 ASVNSCKM 378
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 214 bits (546), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 192/365 (52%), Gaps = 22/365 (6%)
Query: 72 KDELATLSACINQL---NIQRRQILNEFLDSKGNIRVFCRIRPISMGENFGRLRPVIAKD 128
+ + A L C QL N++R+++ N +D +GNIRVFCRIRP E D
Sbjct: 24 EQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHD 83
Query: 129 SSNVLLKLADNKSKN------YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYG 182
S V L+ D ++K+ +SFD+VFHP SSQ ++F V P+I+S LDGYN CIFAYG
Sbjct: 84 ESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYG 143
Query: 183 QTGTGKSFTMEGTPDSPGIVPRAIEAIF---KQAMESNHAFRISFSMLEIYLGSLKDLLV 239
Q+G+GK++TM+G P+S G++PR ++ +F + + I + LEIY L DLL
Sbjct: 144 QSGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS 203
Query: 240 TQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXX 299
+ + + K I + N+ V D N L
Sbjct: 204 NEQKDME------IRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNE 257
Query: 300 XXXXXHCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLS 359
H + ++ + A ++ I LVDL GSE + R+ E K IN SLS
Sbjct: 258 RSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLS 313
Query: 360 ALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFA 419
L +VI AL +++ H+PYRNSKLT +L SLG +SKTLM ++VSP +D E++ SL FA
Sbjct: 314 ELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 373
Query: 420 TRVKS 424
V S
Sbjct: 374 ASVNS 378
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/368 (36%), Positives = 192/368 (52%), Gaps = 22/368 (5%)
Query: 72 KDELATLSACINQL---NIQRRQILNEFLDSKGNIRVFCRIRPISMGENFGRLRPVIAKD 128
+ + A L C QL N++R+++ N +D +GNIRVFCRIRP E D
Sbjct: 24 EQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHD 83
Query: 129 SSNVLLKLADNKSKN------YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYG 182
S V L+ D ++K+ +SFD+VFHP SSQ ++F V P+I+S LDGYN CIFAYG
Sbjct: 84 ESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYG 143
Query: 183 QTGTGKSFTMEGTPDSPGIVPRAIEAIF---KQAMESNHAFRISFSMLEIYLGSLKDLLV 239
QTG+GK++TM+G P+S G++PR ++ +F + + I + LEIY L DLL
Sbjct: 144 QTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS 203
Query: 240 TQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXX 299
+ + + K I + N+ V D N L
Sbjct: 204 NEQKDME------IRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNE 257
Query: 300 XXXXXHCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLS 359
H + ++ + A ++ I LVDL GSE + R+ E K I SLS
Sbjct: 258 RSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNIKRSLS 313
Query: 360 ALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFA 419
L +VI AL +++ H+PYRNSKLT +L SLG +SKTLM ++VSP +D E++ SL FA
Sbjct: 314 ELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 373
Query: 420 TRVKSVHL 427
V S +
Sbjct: 374 ASVNSCKM 381
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 214 bits (544), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 134/366 (36%), Positives = 191/366 (52%), Gaps = 22/366 (6%)
Query: 74 ELATLSACINQL---NIQRRQILNEFLDSKGNIRVFCRIRPISMGENFGRLRPVIAKDSS 130
+ A L C QL N++R+++ N +D + NIRVFCRIRP E D S
Sbjct: 29 QAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDES 88
Query: 131 NVLLKLADNKSKN------YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQT 184
V L+ D ++K+ +SFD+VFHP SSQ ++F V P+I+S LDGYN CIFAYGQT
Sbjct: 89 TVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQT 148
Query: 185 GTGKSFTMEGTPDSPGIVPRAIEAIF---KQAMESNHAFRISFSMLEIYLGSLKDLLVTQ 241
G+GK++TM+G P+S G++PR ++ +F + + I + LEIY L DLL +
Sbjct: 149 GSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE 208
Query: 242 PTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXX 301
+ + K I + N+ V D N L
Sbjct: 209 QKDME------IRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS 262
Query: 302 XXXHCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSAL 361
H + ++ + A ++ I LVDL GSE + R+ E K IN SLS L
Sbjct: 263 SRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSEL 318
Query: 362 GDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATR 421
+VI AL +++ H+PYRNSKLT +L SLG +SKTLM ++VSP +D E++ SL FA
Sbjct: 319 TNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAAS 378
Query: 422 VKSVHL 427
V S +
Sbjct: 379 VNSCKM 384
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 206 bits (525), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 125/362 (34%), Positives = 193/362 (53%), Gaps = 22/362 (6%)
Query: 99 SKGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDE 158
S +I+V R RP + E +P++ + + +++FD+VF Q +
Sbjct: 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSD 63
Query: 159 VFS-EVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT----PDSPGIVPRAIEAIFKQA 213
+F ++P + +L+GYN +FAYGQTG GKS+TM GT PD G++PR +E IF
Sbjct: 64 IFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSI 123
Query: 214 MES--NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTI 271
+ S N + + S +EIY+ ++DLL Q D LP +H E G+ + L+ I
Sbjct: 124 LSSAANIEYTVRVSYMEIYMERIRDLLAPQ----NDNLP----VHEEKNRGVYVKGLLEI 175
Query: 272 QVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNKIWLVD 331
V+ + + R G H + I+IT + + +++LVD
Sbjct: 176 YVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVD 235
Query: 332 LGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKR-HVPYRNSKLTQVLKDSL 390
L GSE+V KT A G+ L+E K IN SLSALG VI AL K HVPYR+SKLT++L++SL
Sbjct: 236 LAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESL 295
Query: 391 GEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDSNEARDQKEVSMKNLQQKM 450
G +S+T ++++ SP + ET+ +L F R KS+ N+A+ E+S L+Q +
Sbjct: 296 GGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIK------NKAKVNAELSPAELKQML 349
Query: 451 KK 452
K
Sbjct: 350 AK 351
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 195 bits (495), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 133/355 (37%), Positives = 188/355 (52%), Gaps = 34/355 (9%)
Query: 100 KGNIRVFCRIRPISMGENFGR----LRPVIAKDSSNVLLKLADNKS-------------- 141
KGNIRVFCR+RP+ GE L P S+ +L+ ++S
Sbjct: 21 KGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPP 80
Query: 142 --KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDS- 198
++SFD+VF PGS QDEVF E+ +++S LDGY CIFAYGQTG+GK+FTMEG P
Sbjct: 81 PRHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGD 140
Query: 199 ---PGIVPRAIEAIFKQAME-SNHAFRISF--SMLEIYLGSLKDLLVTQPTKATDPLPPC 252
G++PRA+ +F A E S + SF S +EIY +++DLL T K C
Sbjct: 141 PQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQG--GEC 198
Query: 253 LSIHTEPKG-GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRIS 311
P + + N + V+ + L L + H + ++
Sbjct: 199 EIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQ 258
Query: 312 ITCFDAPERRREKNKIWLVDLGGSERVLKTKARG----RRLDEGKAINLSLSALGDVIYA 367
I+ + + + LVDL GSER+ A G RL E +AIN SLS LG VI A
Sbjct: 259 ISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMA 318
Query: 368 LQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRV 422
L ++ HVPYRNSKLT +L++SLG +K LM V++SP E+++ E++ SL FA++V
Sbjct: 319 LSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKV 373
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 192 bits (488), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 126/347 (36%), Positives = 182/347 (52%), Gaps = 25/347 (7%)
Query: 100 KGNIRVFCRIRPISMGENFGRLR----------PVIAKDSSNVLLKLADNKSKNYS---- 145
KGNIRVFCRIR +S + P D S L + N + N+S
Sbjct: 373 KGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRF 432
Query: 146 -FDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPR 204
FDK+F S D VF E+ +I+ LDG N C+FAYGQTG+GK+FTM + + G++P
Sbjct: 433 LFDKIFEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM--SHPTNGMIPL 490
Query: 205 AIEAIF---KQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKG 261
+++ IF ++ E ++ + +EIY ++ DLL DP H + G
Sbjct: 491 SLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLL----NPKIDPNTKYEIKHDDIAG 546
Query: 262 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERR 321
+ N+ TI + QA+ + + H + I + +++ +
Sbjct: 547 KTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKE 606
Query: 322 REKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQ-RRKRHVPYRNS 380
+ L+DL GSER+ ++A G RL E +AIN SLS LGDVI++L + HVPYRNS
Sbjct: 607 SSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNS 666
Query: 381 KLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 427
KLT +LK SLG +SKTLM V++SP DL ETI SL FAT+V + +
Sbjct: 667 KLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTRI 713
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 181/348 (52%), Gaps = 23/348 (6%)
Query: 100 KGNIRVFCRIRPISMGENFGRLRPVI-----AKDSSNVLLKLADNK--SKNYSFDKVFHP 152
+GNIRV+CR+RP + E +I AK + ++ + + + S N+ FD +F P
Sbjct: 4 RGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEP 63
Query: 153 GSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQ 212
+ E+F E+ +++S LDGYN CIFAYGQTG+GK++TM D G++P + IFK
Sbjct: 64 SHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGD--GMIPMTLSHIFKW 121
Query: 213 AM---ESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSI------HTEPKGGI 263
E + + +EIY ++ DLL + K+ D + L H K G
Sbjct: 122 TANLKERGWNYEMECEYIEIYNETILDLL--RDFKSHDNIDEILDSQKHDIRHDHEKQGT 179
Query: 264 EIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRRE 323
I N+ +++ +Q + + + H + + I +
Sbjct: 180 YITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETS 239
Query: 324 KNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR---RKRHVPYRNS 380
+ K+ LVDL GSER+ + G RL E + IN SLS LGDVIYAL KR++P+RNS
Sbjct: 240 QGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNS 299
Query: 381 KLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLG 428
KLT +L+ SL DSKTLM V++ P + + ET+ SL FA++V S +
Sbjct: 300 KLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 189 bits (479), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 121/345 (35%), Positives = 180/345 (52%), Gaps = 22/345 (6%)
Query: 96 FLDSKGNIRVFCRIRPISMGENFGRLRPVIAKDS--SNVLLK----LADNKSKNYSFDKV 149
F S ++RV R RP++ E V+ D V +K A K ++FD V
Sbjct: 16 FQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAV 75
Query: 150 FHPGSSQDEVFSEV-EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT---PDSPGIVPRA 205
+ + Q E++ E P++ SVL G+N IFAYGQTGTGK++TMEG P+ G++P +
Sbjct: 76 YDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNS 135
Query: 206 IEAIFKQAMES-NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIE 264
+ IF S N + + S LEIY ++DLL TK L + P G+
Sbjct: 136 FDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKR-------LELKERPDTGVY 188
Query: 265 IDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAP---ERR 321
+ +L + + + +G + H + I+I C + E
Sbjct: 189 VKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENH 248
Query: 322 REKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYAL-QRRKRHVPYRNS 380
K+ LVDL GSER KT A+G RL E INLSLSALG+VI AL + H+PYR+S
Sbjct: 249 IRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDS 308
Query: 381 KLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 425
KLT++L+DSLG ++KT+M+ +V P ++ ET+ +L +A R K++
Sbjct: 309 KLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNI 353
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 187 bits (475), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 177/330 (53%), Gaps = 18/330 (5%)
Query: 102 NIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFS 161
NI+V CR RP++ E R IAK + +A SK Y+FD+VF +SQ++V++
Sbjct: 8 NIKVMCRFRPLNESE-VNRGDKYIAKFQGEDTVVIA---SKPYAFDRVFQSSTSQEQVYN 63
Query: 162 E-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT---PDSPGIVPRAIEAIFK--QAME 215
+ + ++K VL+GYN IFAYGQT +GK+ TMEG P+ GI+PR ++ IF +M+
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMD 123
Query: 216 SNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVND 275
N F I S EIYL ++DLL T LS+H + + V
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLLDVSKTN--------LSVHEDKNRVPYVKGCTERFVCS 175
Query: 276 FNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNKIWLVDLGGS 335
++ + G H + I++ + ++ K++LVDL GS
Sbjct: 176 PDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGS 235
Query: 336 ERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSK 395
E+V KT A G LDE K IN SLSALG+VI AL +VPYR+SK+T++L+DSLG + +
Sbjct: 236 EKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCR 295
Query: 396 TLMLVHVSPKEDDLCETICSLNFATRVKSV 425
T +++ SP + ET +L F R K++
Sbjct: 296 TTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 187 bits (475), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 177/330 (53%), Gaps = 18/330 (5%)
Query: 102 NIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFS 161
NI+V CR RP++ E R IAK + +A SK Y+FD+VF +SQ++V++
Sbjct: 8 NIKVMCRFRPLNESE-VNRGDKYIAKFQGEDTVVIA---SKPYAFDRVFQSSTSQEQVYN 63
Query: 162 E-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT---PDSPGIVPRAIEAIFK--QAME 215
+ + ++K VL+GYN IFAYGQT +GK+ TMEG P+ GI+PR ++ IF +M+
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMD 123
Query: 216 SNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVND 275
N F I S EIYL ++DLL T LS+H + + V
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLLDVSKTN--------LSVHEDKNRVPYVKGCTERFVCS 175
Query: 276 FNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNKIWLVDLGGS 335
++ + G H + I++ + ++ K++LVDL GS
Sbjct: 176 PDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGS 235
Query: 336 ERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSK 395
E+V KT A G LDE K IN SLSALG+VI AL +VPYR+SK+T++L+DSLG + +
Sbjct: 236 EKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCR 295
Query: 396 TLMLVHVSPKEDDLCETICSLNFATRVKSV 425
T +++ SP + ET +L F R K++
Sbjct: 296 TTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 118/330 (35%), Positives = 177/330 (53%), Gaps = 18/330 (5%)
Query: 102 NIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFS 161
NI+V CR RP++ E R +AK + +A SK Y+FD+VF +SQ++V++
Sbjct: 8 NIKVMCRFRPLNESE-VNRGDKYVAKFQGEDTVMIA---SKPYAFDRVFQSSTSQEQVYN 63
Query: 162 E-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT---PDSPGIVPRAIEAIFK--QAME 215
+ + ++K VL+GYN IFAYGQT +GK+ TMEG P+ GI+PR ++ IF +M+
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMD 123
Query: 216 SNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVND 275
N F I S EIYL ++DLL T LS+H + + V
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLLDVSKTN--------LSVHEDKNRVPYVKGCTERFVCS 175
Query: 276 FNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNKIWLVDLGGS 335
++ + G H + I++ + ++ K++LVDL GS
Sbjct: 176 PDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGS 235
Query: 336 ERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSK 395
E+V KT A G LDE K IN SLSALG+VI AL +VPYR+SK+T++L+DSLG + +
Sbjct: 236 EKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCR 295
Query: 396 TLMLVHVSPKEDDLCETICSLNFATRVKSV 425
T +++ SP + ET +L F R K++
Sbjct: 296 TTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 128/376 (34%), Positives = 195/376 (51%), Gaps = 38/376 (10%)
Query: 103 IRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKN--------YSFDKVFHPGS 154
I+V CR RP++ E K S ++K +N +N Y FDKVF P +
Sbjct: 13 IKVVCRFRPLNDSEE---------KAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPNA 63
Query: 155 SQDEVFSEV-EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT-PDS--PGIVPRAIEAIF 210
SQ++V++E + ++ VL GYN IFAYGQT +GK+ TMEG DS GI+PR + IF
Sbjct: 64 SQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIF 123
Query: 211 KQ--AMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNL 268
AME N F I S EIY+ ++DLL D LS+H + +
Sbjct: 124 NHIYAMEVNLEFHIKVSYYEIYMDKIRDLL--------DVSKVNLSVHEDKNRVPYVKGA 175
Query: 269 VTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNKIW 328
V+ + G H + I++ + +++ K++
Sbjct: 176 TERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLY 235
Query: 329 LVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR-RKRHVPYRNSKLTQVLK 387
LVDL GSE+V KT A G LDE K IN SLSALG+VI AL K H+PYR+SKLT++L+
Sbjct: 236 LVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQ 295
Query: 388 DSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDSNEARDQKEVSMKNLQ 447
+SLG +++T +++ SP + ET +L+F R K+V N +E++ + +
Sbjct: 296 ESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTV------KNVVCVNEELTAEEWK 349
Query: 448 QKMKKIEEERLRVRGE 463
++ +K +E+ R++G+
Sbjct: 350 RRYEKEKEKNARLKGK 365
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 124/357 (34%), Positives = 185/357 (51%), Gaps = 23/357 (6%)
Query: 89 RRQILNEFLDSKGNIRVFCRIRPISMGENFG----RLRPVIAKDSSNVLLKLADNKSKN- 143
RR + NE + +GNIRV+CRIRP E+ +++P D N + N+ +
Sbjct: 16 RRALHNELQELRGNIRVYCRIRPPLPHEDDNIEHIKVQPF---DDDNGDQGMTINRGNSQ 72
Query: 144 ---YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPG 200
+ FDK+F + DE+F EV +I+S LDGYN CIFAYGQTG+GK++TM D G
Sbjct: 73 VIPFKFDKIFDQQETNDEIFKEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGD--G 130
Query: 201 IVPRAIEAIFK---QAMESNHAFRISFSMLEIYLGSLKDLLV----TQPTKATDPLPPCL 253
IVP I IF + ++++S +EIY ++ DLL +Q +
Sbjct: 131 IVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHE 190
Query: 254 SIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISIT 313
H + I N+ T ++ + ++ + + H + I +
Sbjct: 191 IRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLE 250
Query: 314 CFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR--- 370
+ + + + LVDL GSER+ + G RL E ++IN SLS LGDVI+AL
Sbjct: 251 GKNEGTGEKSQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDG 310
Query: 371 RKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 427
+KRH+P+RNSKLT +L+ SL SKTLM V++SP L ETI SL FA++V + +
Sbjct: 311 QKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNNTKM 367
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 180 bits (457), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 122/352 (34%), Positives = 181/352 (51%), Gaps = 37/352 (10%)
Query: 103 IRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKL---------ADNKSKNYSFDKVF--- 150
++V RIRP++ E + V+ D++ V+L A + K +++D F
Sbjct: 3 VKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSM 62
Query: 151 -----HPGSSQDEVFSEV-EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPR 204
+ QD VF + E ++++ DGYNACIFAYGQTG+GKS+TM GT D PG++PR
Sbjct: 63 DESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPR 122
Query: 205 AIEAIFKQAM-ESN--HAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKG 261
+F++ E N +F++ S +EIY ++DLL + ++ T L +
Sbjct: 123 LCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQT------LKVREHSVL 176
Query: 262 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISI--TCFDAPE 319
G +D L + V + L G + H + +I++ T +D
Sbjct: 177 GPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKS 236
Query: 320 --RRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYAL------QRR 371
+ K+ LVDL GSER KT A G RL EG IN SL+ LG VI AL + +
Sbjct: 237 GTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNK 296
Query: 372 KRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVK 423
+ VPYR+S LT +LKDSLG +SKT M+ VSP D+ ET+ +L +A R K
Sbjct: 297 NKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 180 bits (457), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 122/348 (35%), Positives = 182/348 (52%), Gaps = 30/348 (8%)
Query: 102 NIRVFCRIRPISMGENFGRLRPVIAKD--SSNVLLK---LADNKS-KNYSFDKVFHPGSS 155
NI+V R+RP ++ E ++ D V ++ LAD S K Y+FD VF +
Sbjct: 18 NIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 156 QDEVF-SEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG--TPDS---------PGIVP 203
Q +V+ S V P++ V+ GYNA IFAYGQTGTGK+FTMEG +P+ GI+P
Sbjct: 78 QIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGIIP 137
Query: 204 RAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP--KG 261
R + IF++ ++ F + S+LEIY L DLL + + L + +P K
Sbjct: 138 RTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSERLQMFDDPRNKR 192
Query: 262 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISI----TCFDA 317
G+ I L I V++ ++ ++ G H + ++I T D
Sbjct: 193 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 252
Query: 318 PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPY 377
E + K+ LVDL GSE + ++ A +R E IN SL LG VI AL R HVPY
Sbjct: 253 EELVK-IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 311
Query: 378 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 425
R SKLT++L+DSLG ++T ++ +SP +L ET+ +L +A R K++
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 176 bits (446), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 124/360 (34%), Positives = 184/360 (51%), Gaps = 28/360 (7%)
Query: 89 RRQILNEFLDSKGNIRVFCRIRPI--SMGENFGRLRPVIAKDSSNVLLKLADNKSKN--- 143
RR + NE + +GNIRV+CRIRP ++ + L V D ++ + + K +N
Sbjct: 2 RRTLHNELQELRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQ 61
Query: 144 ---YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPG 200
+ FDK+F + +VF EV +++S LDGYN CIFAYGQTG+GK+FTM D G
Sbjct: 62 VHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--G 119
Query: 201 IVPRAIEAIF---KQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSI-- 255
I+P I IF + ++++ +EIY ++ DLL + D SI
Sbjct: 120 IIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDT-----SIGL 174
Query: 256 -----HTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRI 310
H + I N+ + ++ + + + H + I
Sbjct: 175 KHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFII 234
Query: 311 SITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR 370
++ +A + LVDL GSER+ ++ G RL E + IN SLS LGDVI+AL +
Sbjct: 235 HLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQ 294
Query: 371 ---RKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 427
KRH+P+RNSKLT +L+ SL DSKTLM V++SP + ET+ SL FA++V S L
Sbjct: 295 PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 354
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/356 (34%), Positives = 184/356 (51%), Gaps = 20/356 (5%)
Query: 89 RRQILNEFLDSKGNIRVFCRIRPI--SMGENFGRLRPVIAKDSSNVLLKLADNKSKN--- 143
RR + NE + +GNIRV+ RIRP ++ + L V D ++ + + K +N
Sbjct: 47 RRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQ 106
Query: 144 ---YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPG 200
+ FDK+F + +VF EV +++S LDGYN IFAYGQTG+GK+FTM D G
Sbjct: 107 VHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGD--G 164
Query: 201 IVPRAIEAIFK---QAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDP---LPPCLS 254
I+P I IF + ++++ +EIY ++ DLL + D L +
Sbjct: 165 IIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 224
Query: 255 IHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITC 314
H + I N+ ++++ + + + H + I ++
Sbjct: 225 -HDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSG 283
Query: 315 FDAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR---R 371
+A + LVDL GSER+ ++ G RL E + IN SLSALGDVI+AL +
Sbjct: 284 SNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDST 343
Query: 372 KRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 427
KRH+P+RNSKLT +L+ SL DSKTLM V++SP + ET+ SL FA++V S L
Sbjct: 344 KRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 399
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 116/343 (33%), Positives = 172/343 (50%), Gaps = 25/343 (7%)
Query: 99 SKGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKL-----------ADNKSKNYSFD 147
S NI+V R RP++ E +I D ++ + + A + ++FD
Sbjct: 2 SSDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFD 61
Query: 148 KVFHPGSSQDEVF-SEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAI 206
V+ S +F + +P+I +VL+G+N+ IFAYGQTG GK++TM G + PG +P +
Sbjct: 62 AVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSF 121
Query: 207 EAIFK--QAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIE 264
+ +F + SN F + S LE+Y ++DL+ K LP + + GI
Sbjct: 122 KHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLI-----KNNTKLP----LKEDKTRGIY 172
Query: 265 IDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRR-- 322
+D L +V + L G H + + I C + E +
Sbjct: 173 VDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVI 232
Query: 323 EKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKL 382
K+ LVDL GSER KT A G L EG INLSLSALG VI L H+PYR+SKL
Sbjct: 233 RVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKL 292
Query: 383 TQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 425
T++L+DSLG +SKTLM ++SP + ET+ +L +A R K +
Sbjct: 293 TRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQI 335
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 179/348 (51%), Gaps = 30/348 (8%)
Query: 102 NIRVFCRIRPISMGENFGRLRPVIA-----KDSSNVLLKLADNKS-KNYSFDKVFHPGSS 155
NI+V R RP ++ E ++ K+ S LAD S K Y+FD VF +
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 156 QDEVF-SEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG--TPDS---------PGIVP 203
Q +V+ S V P++ V+ GYN IFAYGQTGTGK+FTMEG +P+ GI+P
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 204 RAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP--KG 261
R + IF++ ++ F + S+LEIY L DLL + + L + +P K
Sbjct: 138 RTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSERLQMFDDPRNKR 192
Query: 262 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISI----TCFDA 317
G+ I L I V++ ++ ++ G H + ++I T D
Sbjct: 193 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 252
Query: 318 PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPY 377
E + K+ LVDL GSE + ++ A +R E IN SL LG VI AL R HVPY
Sbjct: 253 EELVK-IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 311
Query: 378 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 425
R SKLT++L+DSLG ++T ++ +SP +L ET+ +L +A R K++
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 179/348 (51%), Gaps = 30/348 (8%)
Query: 102 NIRVFCRIRPISMGENFGRLRPVIA-----KDSSNVLLKLADNKS-KNYSFDKVFHPGSS 155
NI+V R RP ++ E ++ K+ S LAD S K Y+FD VF +
Sbjct: 17 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 76
Query: 156 QDEVF-SEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG--TPDS---------PGIVP 203
Q +V+ S V P++ V+ GYN IFAYGQTGTGK+FTMEG +P+ GI+P
Sbjct: 77 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 136
Query: 204 RAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP--KG 261
R + IF++ ++ F + S+LEIY L DLL + + L + +P K
Sbjct: 137 RTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSERLQMFDDPRNKR 191
Query: 262 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISI----TCFDA 317
G+ I L I V++ ++ ++ G H + ++I T D
Sbjct: 192 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 251
Query: 318 PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPY 377
E + K+ LVDL GSE + ++ A +R E IN SL LG VI AL R HVPY
Sbjct: 252 EELVK-IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 310
Query: 378 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 425
R SKLT++L+DSLG ++T ++ +SP +L ET+ +L +A R K++
Sbjct: 311 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 358
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 179/348 (51%), Gaps = 30/348 (8%)
Query: 102 NIRVFCRIRPISMGENFGRLRPVIA-----KDSSNVLLKLADNKS-KNYSFDKVFHPGSS 155
NI+V R RP ++ E ++ K+ S LAD S K Y+FD VF +
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 156 QDEVF-SEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG--TPDS---------PGIVP 203
Q +V+ S V P++ V+ GYN IFAYGQTGTGK+FTMEG +P+ GI+P
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 204 RAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP--KG 261
R + IF++ ++ F + S+LEIY L DLL + + L + +P K
Sbjct: 138 RTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSERLQMFDDPRNKR 192
Query: 262 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISI----TCFDA 317
G+ I L I V++ ++ ++ G H + ++I T D
Sbjct: 193 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 252
Query: 318 PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPY 377
E + K+ LVDL GSE + ++ A +R E IN SL LG VI AL R HVPY
Sbjct: 253 EELVK-IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 311
Query: 378 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 425
R SKLT++L+DSLG ++T ++ +SP +L ET+ +L +A R K++
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 179/348 (51%), Gaps = 30/348 (8%)
Query: 102 NIRVFCRIRPISMGENFGRLRPVIA-----KDSSNVLLKLADNKS-KNYSFDKVFHPGSS 155
NI+V R RP ++ E ++ K+ S LAD S K Y+FD VF +
Sbjct: 20 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 79
Query: 156 QDEVF-SEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG--TPDS---------PGIVP 203
Q +V+ S V P++ V+ GYN IFAYGQTGTGK+FTMEG +P+ GI+P
Sbjct: 80 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 139
Query: 204 RAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP--KG 261
R + IF++ ++ F + S+LEIY L DLL + + L + +P K
Sbjct: 140 RTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSERLQMFDDPRNKR 194
Query: 262 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISI----TCFDA 317
G+ I L I V++ ++ ++ G H + ++I T D
Sbjct: 195 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 254
Query: 318 PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPY 377
E + K+ LVDL GSE + ++ A +R E IN SL LG VI AL R HVPY
Sbjct: 255 EELVK-IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 313
Query: 378 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 425
R SKLT++L+DSLG ++T ++ +SP +L ET+ +L +A R K++
Sbjct: 314 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 361
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 179/348 (51%), Gaps = 30/348 (8%)
Query: 102 NIRVFCRIRPISMGENFGRLRPVIA-----KDSSNVLLKLADNKS-KNYSFDKVFHPGSS 155
NI+V R RP ++ E ++ K+ S LAD S K Y+FD VF +
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 156 QDEVF-SEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG--TPDS---------PGIVP 203
Q +V+ S V P++ V+ GYN IFAYGQTGTGK+FTMEG +P+ GI+P
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGIIP 137
Query: 204 RAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP--KG 261
R + IF++ ++ F + S+LEIY L DLL + + L + +P K
Sbjct: 138 RTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSERLQMFDDPRNKR 192
Query: 262 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISI----TCFDA 317
G+ I L I V++ ++ ++ G H + ++I T D
Sbjct: 193 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 252
Query: 318 PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPY 377
E + K+ LVDL GSE + ++ A +R E IN SL LG VI AL R HVPY
Sbjct: 253 EELVK-IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 311
Query: 378 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 425
R SKLT++L+DSLG ++T ++ +SP +L ET+ +L +A R K++
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 179/348 (51%), Gaps = 30/348 (8%)
Query: 102 NIRVFCRIRPISMGENFGRLRPVIA-----KDSSNVLLKLADNKS-KNYSFDKVFHPGSS 155
NI+V R RP ++ E ++ K+ S LAD S K Y+FD VF +
Sbjct: 9 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 68
Query: 156 QDEVF-SEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG--TPDS---------PGIVP 203
Q +V+ S V P++ V+ GYN IFAYGQTGTGK+FTMEG +P+ GI+P
Sbjct: 69 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 128
Query: 204 RAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP--KG 261
R + IF++ ++ F + S+LEIY L DLL + + L + +P K
Sbjct: 129 RTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSERLQMFDDPRNKR 183
Query: 262 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISI----TCFDA 317
G+ I L I V++ ++ ++ G H + ++I T D
Sbjct: 184 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 243
Query: 318 PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPY 377
E + K+ LVDL GSE + ++ A +R E IN SL LG VI AL R HVPY
Sbjct: 244 EELVK-IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 302
Query: 378 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 425
R SKLT++L+DSLG ++T ++ +SP +L ET+ +L +A R K++
Sbjct: 303 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 350
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 179/348 (51%), Gaps = 30/348 (8%)
Query: 102 NIRVFCRIRPISMGENFGRLRPVIA-----KDSSNVLLKLADNKS-KNYSFDKVFHPGSS 155
NI+V R RP ++ E ++ K+ S LAD S K Y+FD VF +
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 156 QDEVF-SEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG--TPDSP---------GIVP 203
Q +V+ S V P++ V+ GYN IFAYGQTGTGK+FTMEG +P+ GI+P
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGIIP 137
Query: 204 RAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP--KG 261
R + IF++ ++ F + S+LEIY L DLL + + L + +P K
Sbjct: 138 RTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSERLQMFDDPRNKR 192
Query: 262 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISI----TCFDA 317
G+ I L I V++ ++ ++ G H + ++I T D
Sbjct: 193 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 252
Query: 318 PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPY 377
E + K+ LVDL GSE + ++ A +R E IN SL LG VI AL R HVPY
Sbjct: 253 EELVK-IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 311
Query: 378 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 425
R SKLT++L+DSLG ++T ++ +SP +L ET+ +L +A R K++
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 172 bits (437), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 179/348 (51%), Gaps = 30/348 (8%)
Query: 102 NIRVFCRIRPISMGENFGRLRPVIA-----KDSSNVLLKLADNKS-KNYSFDKVFHPGSS 155
NI+V R RP ++ E ++ K+ S LAD S K Y+FD VF +
Sbjct: 3 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 62
Query: 156 QDEVF-SEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG--TPDS---------PGIVP 203
Q +V+ S V P++ V+ GYN IFAYGQTGTGK+FTMEG +P+ GI+P
Sbjct: 63 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 122
Query: 204 RAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP--KG 261
R + IF++ ++ F + S+LEIY L DLL + + L + +P K
Sbjct: 123 RTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSERLQMFDDPRNKR 177
Query: 262 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISI----TCFDA 317
G+ I L I V++ ++ ++ G H + ++I T D
Sbjct: 178 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 237
Query: 318 PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPY 377
E + K+ LVDL GSE + ++ A +R E IN SL LG VI AL R HVPY
Sbjct: 238 EELVK-IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 296
Query: 378 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 425
R SKLT++L+DSLG ++T ++ +SP +L ET+ +L +A R K++
Sbjct: 297 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 118/369 (31%), Positives = 180/369 (48%), Gaps = 46/369 (12%)
Query: 96 FLDSKGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKS------KNYSFDKV 149
F + ++V R RP+S E ++ D + L + ++ K ++FD V
Sbjct: 16 FQGASEALKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGELPKTFTFDAV 75
Query: 150 FHPGSSQDEVFSE-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT---PDSPGIVPRA 205
+ S Q +++ E V P+I SVL G+N +FAYGQTGTGK++TM+GT P+ G++P A
Sbjct: 76 YDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNA 135
Query: 206 IEAIFKQAMES-NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIE 264
E IF S N + + S LEIY ++DLL +P K L + P+ G+
Sbjct: 136 FEHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKR-------LELKENPETGVY 188
Query: 265 IDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREK 324
I +L + + + + LG + H + I++ C + ++
Sbjct: 189 IKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDH 248
Query: 325 ---NKIWLVDLGGSERVLKT---KARG---------------------RRLDEGKAINLS 357
K+ LVDL GSER K A G R E INLS
Sbjct: 249 IRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLS 308
Query: 358 LSALGDVIYALQ-RRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSL 416
LSALG+VI AL R H+PYR+SKLT++L+DSLG ++KT+M+ + P E++ +L
Sbjct: 309 LSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTL 368
Query: 417 NFATRVKSV 425
FA R K++
Sbjct: 369 RFANRAKNI 377
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 170 bits (431), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 120/349 (34%), Positives = 178/349 (51%), Gaps = 28/349 (8%)
Query: 100 KGNIRVFCRIRPI--SMGENFGRLRPVIAKDSSNVLLKLADNKSKN------YSFDKVFH 151
+GNIRV+CRIRP ++ + L V D ++ + + K +N + FDK+F
Sbjct: 2 RGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFD 61
Query: 152 PGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIF- 210
+ +VF EV +++S LDGYN CIFAYGQTG+GK+FTM D GI+P I IF
Sbjct: 62 QQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIFN 119
Query: 211 --KQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSI-------HTEPKG 261
+ ++++ +EIY ++ DLL + D SI H +
Sbjct: 120 WINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDT-----SIGLKHEIRHDQETK 174
Query: 262 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERR 321
I N+ + ++ + + + H + I ++ +A
Sbjct: 175 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGA 234
Query: 322 REKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR---RKRHVPYR 378
+ LVDL GSER+ ++ G RL E + IN SLS LGDVI+AL + KRH+P+R
Sbjct: 235 HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFR 294
Query: 379 NSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 427
NSKLT +L+ SL DSKTLM V++SP + ET+ SL FA++V S L
Sbjct: 295 NSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 120/348 (34%), Positives = 177/348 (50%), Gaps = 28/348 (8%)
Query: 101 GNIRVFCRIRPI--SMGENFGRLRPVIAKDSSNVLLKLADNKSKN------YSFDKVFHP 152
GNIRV+CRIRP ++ + L V D ++ + + K +N + FDK+F
Sbjct: 2 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 61
Query: 153 GSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIF-- 210
+ +VF EV +++S LDGYN CIFAYGQTG+GK+FTM D GI+P I IF
Sbjct: 62 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIFNW 119
Query: 211 -KQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSI-------HTEPKGG 262
+ ++++ +EIY ++ DLL + D SI H +
Sbjct: 120 INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDT-----SIGLKHEIRHDQETKT 174
Query: 263 IEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRR 322
I N+ + ++ + + + H + I ++ +A
Sbjct: 175 TTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAH 234
Query: 323 EKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR---RKRHVPYRN 379
+ LVDL GSER+ ++ G RL E + IN SLS LGDVI+AL + KRH+P+RN
Sbjct: 235 SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRN 294
Query: 380 SKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 427
SKLT +L+ SL DSKTLM V++SP + ET+ SL FA++V S L
Sbjct: 295 SKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 342
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 177/349 (50%), Gaps = 28/349 (8%)
Query: 100 KGNIRVFCRIRPI--SMGENFGRLRPVIAKDSSNVLLKLADNKSKN------YSFDKVFH 151
+GNIRV+CRIRP ++ + L V D ++ + + K +N + FDK+F
Sbjct: 2 RGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFD 61
Query: 152 PGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIF- 210
+ +VF EV +++S LDGYN CIFAYGQTG+GK+FTM D GI+P I IF
Sbjct: 62 QQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIFN 119
Query: 211 --KQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSI-------HTEPKG 261
+ ++++ +EIY ++ DLL + D SI H +
Sbjct: 120 WINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDT-----SIGLKHEIRHDQETK 174
Query: 262 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERR 321
I N+ + ++ + + + H + I ++ +A
Sbjct: 175 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGA 234
Query: 322 REKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR---RKRHVPYR 378
+ LVDL GS R+ ++ G RL E + IN SLS LGDVI+AL + KRH+P+R
Sbjct: 235 HSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFR 294
Query: 379 NSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 427
NSKLT +L+ SL DSKTLM V++SP + ET+ SL FA++V S L
Sbjct: 295 NSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/366 (31%), Positives = 185/366 (50%), Gaps = 23/366 (6%)
Query: 96 FLDSKGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKN----YSFDKVFH 151
F +RV R+RP G G P + + L++A+ ++ Y FD +
Sbjct: 16 FQGPPARVRVAVRLRPFVDG-TAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYG 74
Query: 152 PGSSQDEVFS-EVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIF 210
S+Q ++++ V+P+++ +L+G NA + AYG TG GK+ TM G+P+ PG++PRA+ +
Sbjct: 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLL 134
Query: 211 KQAMESN-----HAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEI 265
+ E A ++ S LEIY + DLL DP L I + +G I I
Sbjct: 135 QLTREEGAEGRPWALSVTMSYLEIYQEKVLDLL--------DPASGDLVIREDCRGNILI 186
Query: 266 DNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFD--APERRRE 323
L ++ F R + R H ++ + + + AP R+RE
Sbjct: 187 PGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQRE 246
Query: 324 KNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLT 383
K++L+DL GSE +T +G RL E AIN SL LG V+ AL + VPYR+SKLT
Sbjct: 247 -GKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLT 305
Query: 384 QVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDSNEARDQKEVSM 443
++L+DSLG + ++++ +++P+ +T+ +LNFA R K V + +NE+ +
Sbjct: 306 RLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEV-INRPFTNESLQPHALGP 364
Query: 444 KNLQQK 449
L QK
Sbjct: 365 VKLSQK 370
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 177/349 (50%), Gaps = 28/349 (8%)
Query: 100 KGNIRVFCRIRPI--SMGENFGRLRPVIAKDSSNVLLKLADNKSKN------YSFDKVFH 151
+GNIRV+CRIRP ++ + L V D ++ + + K +N + FDK+F
Sbjct: 2 RGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFD 61
Query: 152 PGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIF- 210
+ +VF EV +++S LDGYN CIFAYGQTG+GK+FTM D GI+P I IF
Sbjct: 62 QQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIFN 119
Query: 211 --KQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSI-------HTEPKG 261
+ ++++ +EIY ++ DLL + D SI H +
Sbjct: 120 WINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDT-----SIGLKHEIRHDQETK 174
Query: 262 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERR 321
I N+ + ++ + + + H + I ++ +A
Sbjct: 175 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGA 234
Query: 322 REKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR---RKRHVPYR 378
+ LVDL GSER+ ++ G RL E + I SLS LGDVI+AL + KRH+P+R
Sbjct: 235 HSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPFR 294
Query: 379 NSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 427
NSKLT +L+ SL DSKTLM V++SP + ET+ SL FA++V S L
Sbjct: 295 NSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 167 bits (422), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 111/326 (34%), Positives = 161/326 (49%), Gaps = 50/326 (15%)
Query: 142 KNYSFDKVFHPGSSQDEVFSEVEPVIKSV--------LDGYNACIFAYGQTGTGKSFTME 193
K+++FDK F +++DE ++ E V S+ +GY+ CIFAYGQTG+GKS+TM
Sbjct: 96 KSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155
Query: 194 GTPDSPGIVPRAIEAIFKQAMES-----NHAFRISFSMLEIYLGSLKDLLVTQPTKATDP 248
GTPD PG++PR E +F++ + N ++ + S E+Y ++DLL P P
Sbjct: 156 GTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLA--PVVPNKP 213
Query: 249 LPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMI 308
P L + P G + +L + V + +R R+G H +
Sbjct: 214 -PYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVF 272
Query: 309 RISITCF-------DAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSAL 361
I + D ER ++I LVDL GSER T+A G+RL EG IN SL+ L
Sbjct: 273 TIMLKQIHHDLETDDTTER---SSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTL 329
Query: 362 GDVIYALQRRKRH----------------------VPYRNSKLTQVLKDSLGEDSKTLML 399
G VI AL K VPYR+S LT +LKDSLG +SKT M+
Sbjct: 330 GRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMI 389
Query: 400 VHVSPKEDDLCETICSLNFATRVKSV 425
+SP + D ET+ +L +A + K +
Sbjct: 390 ACISPTDYD--ETLSTLRYADQAKRI 413
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/340 (32%), Positives = 177/340 (52%), Gaps = 27/340 (7%)
Query: 103 IRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE 162
+RV R+RP+ E + + + L ++ + +++ F V + Q+ V+
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPG--LGRVTLGRDRHFGFHVVLAEDAGQEAVYQA 70
Query: 163 -VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTP------DSPGIVPRAIEAIFKQAME 215
V+P++++ +G+NA +FAYGQTG+GK++TM D GIVPRA+ FK E
Sbjct: 71 CVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDE 130
Query: 216 SNHA-FRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVN 274
++ + S LE+Y +DLL T + D + + + +G + + + + V
Sbjct: 131 NDLLDCLVHVSYLEVYKEEFRDLLEVG-TASRD-----IQLREDERGNVVLCGVKEVDVE 184
Query: 275 DFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFD-APER-------RREKNK 326
++ L L +G H + +++ AP R + +K
Sbjct: 185 GLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSK 244
Query: 327 IWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYAL---QRRKRHVPYRNSKLT 383
VDL GSERVLKT + G RL E IN SL ALG+VI AL QRR H+PYR+SK+T
Sbjct: 245 FHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKIT 304
Query: 384 QVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVK 423
++LKDSLG ++KT+M+ VSP D ET+ +LN+A+R +
Sbjct: 305 RILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 174/349 (49%), Gaps = 28/349 (8%)
Query: 99 SKGNIRVFCRIRPISMGENFGRLRPVI--AKDSSNVLLKLADNK-SKNYSFDKVFHPGSS 155
S NI+V+ R+RP++ E R V+ V D+K +K ++FD+ F P S
Sbjct: 21 SNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESK 80
Query: 156 QDEVFSEV-EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSP-----------GIVP 203
Q +V+S V P+I+ VL+GYN +FAYGQTGTGK+ TM G + GI+P
Sbjct: 81 QCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIP 140
Query: 204 RAIEAIFKQ--AMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKG 261
RA+ +F + ME + RIS+ LE+Y L DLL T T + KG
Sbjct: 141 RALSHLFDELRMMEVEYTMRISY--LELYNEELCDLLSTDDTTKIRIFDD-----STKKG 193
Query: 262 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFD---AP 318
+ I L I V+ + +L G H + I + +
Sbjct: 194 SVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEG 253
Query: 319 ERRREKNKIWLVDLGGSERVLKT-KARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPY 377
E + K+ LVDL GSE V K +G R+ E IN SL LG VI AL R HVPY
Sbjct: 254 EDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPY 313
Query: 378 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVH 426
R SKLT++L++SLG +KT ++ +SP D+ ET+ +L +A R K++
Sbjct: 314 RESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQ 362
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 175/337 (51%), Gaps = 26/337 (7%)
Query: 100 KGNIRVFCRIRPI-SMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDE 158
+G + V R+RP+ S E+ G V K +NV+ ++ + SK+++FD+VFH +
Sbjct: 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV--DGSKSFNFDRVFHGNETTKN 60
Query: 159 VFSEVE-PVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME-S 216
V+ E+ P+I S + GYN IFAYGQT +GK++TM G+ D G++PRAI IF++ +
Sbjct: 61 VYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFP 120
Query: 217 NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDF 276
+ F + S +EIY ++ DLL T + P L I + + + +L V
Sbjct: 121 DREFLLRVSYMEIYNETITDLLC-----GTQKMKP-LIIREDVNRNVYVADLTEEVVYTS 174
Query: 277 NQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKN--------KIW 328
AL+ G + H + R+ ++ E+ N +
Sbjct: 175 EMALKWITKGEKSRHYGETKMNQRSSRSHTIFRM---ILESREKGEPSNCEGSVKVSHLN 231
Query: 329 LVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQ--RRKRHVPYRNSKLTQVL 386
LVDL GSER +T A G RL EG IN SL LG VI L + + YR+SKLT++L
Sbjct: 232 LVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRIL 291
Query: 387 KDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVK 423
++SLG ++KT ++ ++P D ET+ +L FA+ K
Sbjct: 292 QNSLGGNAKTRIICTITPVSFD--ETLTALQFASTAK 326
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 155 bits (393), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 153/296 (51%), Gaps = 18/296 (6%)
Query: 139 NKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPD 197
NK + FD VF S+Q EVF +P+++S L+GYN + AYG TG GK+ TM G+ D
Sbjct: 69 NKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSAD 128
Query: 198 SPGIVPRAIEAIFK--QAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSI 255
PG++ + ++K ++ + S LE+Y ++DLLV + P L++
Sbjct: 129 EPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVN-----SGP----LAV 179
Query: 256 HTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCF 315
+ + G+ + L Q + L L G + H + +I +
Sbjct: 180 REDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQ 239
Query: 316 DAPERRREKNKIW---LVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYAL---Q 369
D + +I L+DL GSER + A+G R EG IN SL ALG+VI AL +
Sbjct: 240 DKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSK 299
Query: 370 RRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 425
R+ +H+PYRNSKLT++LKDSLG + +T+M+ VSP +T +L +A R K +
Sbjct: 300 RKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 118/347 (34%), Positives = 174/347 (50%), Gaps = 25/347 (7%)
Query: 97 LDSKGNIRVFCRIRPISMGENFGR--LRPVIAKDSSNVLLK------LADNKSKNYSF-- 146
+ ++ + F R++P ++F +R K S ++ LK + +N+ ++SF
Sbjct: 20 MGTRKKVHAFVRVKPT---DDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKL 76
Query: 147 DKVFHPGSSQDEVFSEV-EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSP---GIV 202
D V H +SQD V+ V + V+ LDGYN I YGQTG GK++TM G ++ GI+
Sbjct: 77 DGVLHD-ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGIL 135
Query: 203 PRAIEAIFKQAMES-NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKG 261
PRA++ +F+ E HA + S LEIY SL DLL T P P ++I P+G
Sbjct: 136 PRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTP--MTIVENPQG 193
Query: 262 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFD--APE 319
+ I L + A L G HC+ I + E
Sbjct: 194 -VFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSE 252
Query: 320 RRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKR-HVPYR 378
+ +KI LVDL GSER+ K+ + G+ L E IN SLS L I AL +KR H+P+R
Sbjct: 253 EKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFR 312
Query: 379 NSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 425
KLT LKDSLG + +++ ++ + L ET+ SL FA+R+K V
Sbjct: 313 QCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 152 bits (385), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 175/340 (51%), Gaps = 27/340 (7%)
Query: 103 IRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE 162
+RV R+RP+ E + + + L ++ + +++ F V + Q+ V+
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPG--LGRVTLGRDRHFGFHVVLAEDAGQEAVYQA 70
Query: 163 -VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTP------DSPGIVPRAIEAIFKQAME 215
V+P++++ +G+NA +FAYGQTG+GK++TM D GIVPRA+ FK E
Sbjct: 71 CVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDE 130
Query: 216 SNHA-FRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVN 274
++ + S LE+Y +DLL T + D + + + +G + + + + V
Sbjct: 131 NDLLDCLVHVSYLEVYKEEFRDLLEVG-TASRD-----IQLREDERGNVVLCGVKEVDVE 184
Query: 275 DFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFD-APER-------RREKNK 326
++ L L +G H + +++ AP R + +K
Sbjct: 185 GLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLVSK 244
Query: 327 IWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYAL---QRRKRHVPYRNSKLT 383
VDL GSERVLKT + G E IN SL ALG+VI AL QRR ++PYR+SK+T
Sbjct: 245 FHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSKIT 304
Query: 384 QVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVK 423
++LKDSLG ++KT+M+ VSP D ET+ +LN+A+R +
Sbjct: 305 RILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/361 (30%), Positives = 169/361 (46%), Gaps = 46/361 (12%)
Query: 101 GNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLL---KLADNKSKNYSFDKVFHPG---- 153
+++V R+RP + E + +I S + K K++SFD +
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 154 ----SSQDEVFSEV-EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT--PDSPGIVPRAI 206
+SQ +V+ ++ E +++ +GYN CIFAYGQTG GKS+TM G D GI+P+
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLC 123
Query: 207 EAIFKQAMES---NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGI 263
E +F + ++ N ++ + S +EIY ++DLL P + L + P G
Sbjct: 124 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL--NPKNKGN-----LRVREHPLLGP 176
Query: 264 EIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRRE 323
+++L + V +N L G + H + I F E
Sbjct: 177 YVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNI---IFTQKRHDAE 233
Query: 324 KN-------KIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKR--- 373
N KI LVDL GSER T A+G RL EG IN SL+ LG VI AL
Sbjct: 234 TNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 293
Query: 374 ---------HVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKS 424
+PYR+S LT +L+++LG +S+T M+ +SP + + ET+ +L +A R K
Sbjct: 294 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQ 353
Query: 425 V 425
+
Sbjct: 354 I 354
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 109/361 (30%), Positives = 169/361 (46%), Gaps = 46/361 (12%)
Query: 101 GNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLL---KLADNKSKNYSFDKVFHPG---- 153
+++V R+RP + E + +I S + K K++SFD +
Sbjct: 20 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 79
Query: 154 ----SSQDEVFSEV-EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT--PDSPGIVPRAI 206
+SQ +V+ ++ E +++ +GYN CIFAYGQTG GKS+TM G D GI+P+
Sbjct: 80 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLC 139
Query: 207 EAIFKQAMES---NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGI 263
E +F + ++ N ++ + S +EIY ++DLL P + L + P G
Sbjct: 140 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL--NPKNKGN-----LRVREHPLLGP 192
Query: 264 EIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRRE 323
+++L + V +N L G + H + I F E
Sbjct: 193 YVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNI---IFTQKRHDAE 249
Query: 324 KN-------KIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKR--- 373
N KI LVDL GSER T A+G RL EG IN SL+ LG VI AL
Sbjct: 250 TNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 309
Query: 374 ---------HVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKS 424
+PYR+S LT +L+++LG +S+T M+ +SP + + ET+ +L +A R K
Sbjct: 310 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQ 369
Query: 425 V 425
+
Sbjct: 370 I 370
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/361 (30%), Positives = 170/361 (47%), Gaps = 46/361 (12%)
Query: 101 GNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLL---KLADNKSKNYSFDKVF--HPG-- 153
+++V R+RP + E + +I S + K K++SFD + H
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 154 ----SSQDEVFSEV-EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT--PDSPGIVPRAI 206
+SQ +V+ ++ E +++ +GYN CIFAYGQTG GKS+TM G D GI+P+
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLC 123
Query: 207 EAIFKQAMES---NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGI 263
E +F + ++ N ++ + S +EIY ++DLL P + L + P G
Sbjct: 124 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL--NPKNKGN-----LRVREHPLLGP 176
Query: 264 EIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRRE 323
+++L + V +N L G + H + I F E
Sbjct: 177 YVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNI---IFTQKRHDAE 233
Query: 324 KN-------KIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKR--- 373
N KI LVDL GSER T A+G RL EG IN SL+ LG VI AL
Sbjct: 234 TNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 293
Query: 374 ---------HVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKS 424
+PYR+S LT +L+++LG +S+T M+ +SP + + ET+ +L +A R K
Sbjct: 294 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQ 353
Query: 425 V 425
+
Sbjct: 354 I 354
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 109/361 (30%), Positives = 169/361 (46%), Gaps = 46/361 (12%)
Query: 101 GNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLL---KLADNKSKNYSFDKVFHPG---- 153
+++V R+RP + E + +I S + K K++SFD +
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 154 ----SSQDEVFSEV-EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT--PDSPGIVPRAI 206
+SQ +V+ ++ E +++ +GYN CIFAYGQTG GKS+TM G D GI+P+
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLC 123
Query: 207 EAIFKQAMES---NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGI 263
E +F + ++ N ++ + S +EIY ++DLL P + L + P G
Sbjct: 124 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL--NPKNKGN-----LRVREHPLLGP 176
Query: 264 EIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRRE 323
+++L + V +N L G + H + I F E
Sbjct: 177 YVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNI---IFTQKRHDAE 233
Query: 324 KN-------KIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKR--- 373
N KI LVDL GSER T A+G RL EG IN SL+ LG VI AL
Sbjct: 234 TNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 293
Query: 374 ---------HVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKS 424
+PYR+S LT +L+++LG +S+T M+ +SP + + ET+ +L +A R K
Sbjct: 294 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQ 353
Query: 425 V 425
+
Sbjct: 354 I 354
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 140/299 (46%), Gaps = 39/299 (13%)
Query: 144 YSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTP------ 196
+ FD F SQDE++ + P++ +L+G+ AYGQTGTGKS++M TP
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 197 DSPGIVPRAIEAIFKQ--AMESNH--AFRISFSMLEIYLGSLKDLLVTQP----TKATDP 248
+ GI+PRA+ IF++ A + N+ A ++ S +EIY DLL + P A
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQ 182
Query: 249 LPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMI 308
CL +H++ D + L L G R H ++
Sbjct: 183 RCTCLPLHSQA---------------DLHHILEL---GTRNRRVRPTNMNSNSSRSHAIV 224
Query: 309 RISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYAL 368
I + + + +++ +VDL GSE V +T G EG INL L ++ V+ ++
Sbjct: 225 TIHV------KSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSM 278
Query: 369 QRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 427
+PYR+S LT VL+ SL S L +SP + DL ET+ +L F T K+ L
Sbjct: 279 AAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAAL 337
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 140/299 (46%), Gaps = 39/299 (13%)
Query: 144 YSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTP------ 196
+ FD F SQDE++ + P++ +L+G+ AYGQTGTGKS++M TP
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 197 DSPGIVPRAIEAIFKQ--AMESNH--AFRISFSMLEIYLGSLKDLLVTQP----TKATDP 248
+ GI+PRA+ IF++ A + N+ A ++ S +EIY DLL + P A
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQ 182
Query: 249 LPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMI 308
CL +H++ D + L L G R H ++
Sbjct: 183 RCTCLPLHSQA---------------DLHHILEL---GTRNRRVRPTNMNSNSSRSHAIV 224
Query: 309 RISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYAL 368
I + + + +++ +VDL GSE V +T G EG INL L ++ V+ ++
Sbjct: 225 TIHV------KSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSM 278
Query: 369 QRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 427
+PYR+S LT VL+ SL S L +SP + DL ET+ +L F T K + L
Sbjct: 279 AAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKLRL 337
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 116 bits (290), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 144/309 (46%), Gaps = 36/309 (11%)
Query: 133 LLKLADNKSKNYSFDKVFHPGSSQDEVFS-EVEPVIKSVLDGYNACIFAYGQTGTGKSFT 191
L K +N++ + FD F +S + V+ P+++++ +G A FAYGQTG+GK+ T
Sbjct: 94 LTKYLENQA--FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHT 151
Query: 192 MEGTPDSPGIVPRAIEAIFKQAMESNHAF-------------RISFSMLEIYLGSLKDLL 238
M G D G A + I+ AM S F + + EIY G L DLL
Sbjct: 152 MGG--DLSGKAQNASKGIY--AMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLL 207
Query: 239 VTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXX 298
+ L + + K +++ L VN + +++ +G
Sbjct: 208 NKKAK---------LRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFAN 258
Query: 299 XXXXXXHCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLD-EGKAINLS 357
H +I + + R K LVDL G+ER T + R+ EG IN S
Sbjct: 259 SNSSRSHACFQIILR-----AKGRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKS 313
Query: 358 LSALGDVIYALQRRKRHVPYRNSKLTQVLKDS-LGEDSKTLMLVHVSPKEDDLCETICSL 416
L AL + I AL + K H P+R SKLTQVL+DS +GE+S+T M+ +SP T+ +L
Sbjct: 314 LLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTL 373
Query: 417 NFATRVKSV 425
+A RVK +
Sbjct: 374 RYADRVKEL 382
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/305 (29%), Positives = 141/305 (46%), Gaps = 28/305 (9%)
Query: 133 LLKLADNKSKNYSFDKVFHPGSSQDEVFS-EVEPVIKSVLDGYNACIFAYGQTGTGKSFT 191
L K +N++ + FD F +S + V+ P+++++ +G A FAYGQTG+GK+ T
Sbjct: 114 LTKYLENQA--FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHT 171
Query: 192 MEG------TPDSPGIVPRAIEAIF---KQAMESNHAFRISFSMLEIYLGSLKDLLVTQP 242
M G S GI A +F Q N + + EIY G + DLL +
Sbjct: 172 MGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKA 231
Query: 243 TKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXX 302
L + + + +++ L V + +++ +G
Sbjct: 232 K---------LRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSS 282
Query: 303 XXHCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLD-EGKAINLSLSAL 361
H +I + + R K LVDL G+ER T + R+ EG IN SL AL
Sbjct: 283 RSHACFQILLR-----TKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLAL 337
Query: 362 GDVIYALQRRKRHVPYRNSKLTQVLKDS-LGEDSKTLMLVHVSPKEDDLCETICSLNFAT 420
+ I AL + K H P+R SKLTQVL+DS +GE+S+T M+ +SP T+ +L +A
Sbjct: 338 KECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYAD 397
Query: 421 RVKSV 425
RVK +
Sbjct: 398 RVKEL 402
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 143/300 (47%), Gaps = 30/300 (10%)
Query: 140 KSKNYSFDKVFHPGSSQDEVFS-EVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPD- 197
+++ + FD F + + V+ P+++++ + A FAYGQTG+GK+ TM G
Sbjct: 137 ENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSG 196
Query: 198 -----SPGIVPRAIEAIFKQAMESNHA---FRISFSMLEIYLGSLKDLLVTQPTKATDPL 249
S GI A +F + N+ ++ + EIY G + DLL + TK
Sbjct: 197 KNQDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLL-NRKTK----- 250
Query: 250 PPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIR 309
L + + K +++ L +V L+L +G H + +
Sbjct: 251 ---LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQ 307
Query: 310 ISITCFDAPERRREK--NKIWLVDLGGSERVLKTKARGRRLD-EGKAINLSLSALGDVIY 366
I + RR+ K K L+DL G+ER T + R+ EG IN SL AL + I
Sbjct: 308 IIL-------RRKGKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIR 360
Query: 367 ALQRRKRHVPYRNSKLTQVLKDS-LGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 425
AL R K H P+R SKLTQVL+DS +GE+S+T M+ +SP T+ +L +A RVK +
Sbjct: 361 ALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/305 (29%), Positives = 141/305 (46%), Gaps = 28/305 (9%)
Query: 133 LLKLADNKSKNYSFDKVFHPGSSQDEVFS-EVEPVIKSVLDGYNACIFAYGQTGTGKSFT 191
L K +N++ + FD F +S + V+ P+++++ +G A FAYGQTG+GK+ T
Sbjct: 42 LTKYLENQA--FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHT 99
Query: 192 MEGTPD------SPGIVPRAIEAIF---KQAMESNHAFRISFSMLEIYLGSLKDLLVTQP 242
M G S GI A +F Q N + + EIY G + DLL +
Sbjct: 100 MGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKA 159
Query: 243 TKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXX 302
L + + + +++ L V + +++ +G
Sbjct: 160 K---------LRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSS 210
Query: 303 XXHCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLD-EGKAINLSLSAL 361
H +I + + R K LVDL G+ER T + R+ EG IN SL AL
Sbjct: 211 RSHACFQILL-----RTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLAL 265
Query: 362 GDVIYALQRRKRHVPYRNSKLTQVLKDS-LGEDSKTLMLVHVSPKEDDLCETICSLNFAT 420
+ I AL + K H P+R SKLTQVL+DS +GE+S+T M+ +SP T+ +L +A
Sbjct: 266 KECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYAD 325
Query: 421 RVKSV 425
RVK +
Sbjct: 326 RVKEL 330
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 115/245 (46%), Gaps = 21/245 (8%)
Query: 102 NIRVFCRIRPISMGENF--GRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEV 159
+I+V CR RP++ E + P + + V+ + K Y FD+V P ++Q++V
Sbjct: 7 SIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVI-----GQGKPYVFDRVLPPNTTQEQV 61
Query: 160 FSE-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSP---GIVPRAIEAIFKQ--A 213
++ + ++K VL+GYN IFAYGQT +GK+ TMEG P GI+PR IF +
Sbjct: 62 YNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYS 121
Query: 214 MESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQV 273
M+ N F I S EIYL ++DLL T L++H + + V
Sbjct: 122 MDENLEFHIKVSYFEIYLDKIRDLLDVSKTN--------LAVHEDKNRVPYVKGCTERFV 173
Query: 274 NDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNKIWLVDLG 333
+ + + + G H + I+I + ++ K++LVDL
Sbjct: 174 SSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLA 233
Query: 334 GSERV 338
GSE+V
Sbjct: 234 GSEKV 238
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 141/294 (47%), Gaps = 28/294 (9%)
Query: 144 YSFDKVFHPGSSQDEVF-SEVEPVIKSVLDGY-NACI---FAYGQTGTGKSFTMEGT--- 195
+ DKVF V+ + ++P+I +D Y N C+ FAYGQTG+GK++TM G+
Sbjct: 52 FIVDKVFDDTVDNFTVYENTIKPLI---IDLYENGCVCSCFAYGQTGSGKTYTMLGSQPY 108
Query: 196 --PDSPGIVPRAIEAIFK--QAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPP 251
D+PGI A IF + ++ I S EIY G L DLL Q K L
Sbjct: 109 GQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLL--QKRKMVAALE- 165
Query: 252 CLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRIS 311
K + + +L ++V + + G H ++ I
Sbjct: 166 ------NGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNID 219
Query: 312 ITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLD-EGKAINLSLSALGDVIYALQR 370
+ + + KI +DL GSER T ++ ++ +G IN SL AL + I A+
Sbjct: 220 LKDIN---KNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDS 276
Query: 371 RKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKS 424
K H+P+R+S+LT+VL+D SK++M+ ++SP +T+ +L +++RVK+
Sbjct: 277 DKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKN 330
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 355 NLSLSALGDVIYAL-QRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETI 413
N SLSALG+VI AL + K HVPYR+SK+T++L+DSLG + +T +++ SP + ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 414 CSLNFATRVKSV 425
+L F R K++
Sbjct: 61 STLMFGQRAKTI 72
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 351 GKAINLSLSALGDVIYAL-QRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDL 409
K IN SLSALG+VI AL + K HVPYR+SK+T++L+DSL + +T +++ SP +
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 410 CETICSLNFATRVKSV 425
ET +L F R K++
Sbjct: 61 AETKSTLMFGQRAKTI 76
>pdb|2V0O|A Chain A, Fcho2 F-Bar Domain
pdb|2V0O|B Chain B, Fcho2 F-Bar Domain
pdb|2V0O|C Chain C, Fcho2 F-Bar Domain
Length = 276
Score = 30.0 bits (66), Expect = 6.4, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 42 LPSTDIKGKKLETQCSEIKEIDSGPTISGIKDELATLSACINQLNIQRRQILNEFLDSKG 101
L D + K ET + ++I+ I IK+ + +LS I ++++Q Q+ EF+++
Sbjct: 188 LAKADFEQKMTET-AQKFQDIEETHLIH-IKEIIGSLSNAIKEIHLQIGQVHEEFINNMA 245
Query: 102 NIRVFCRIRPISMGENFGRLRP 123
N V I+ + + G+ RP
Sbjct: 246 NTTVESLIQKFAESKGTGKERP 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,757,572
Number of Sequences: 62578
Number of extensions: 1015292
Number of successful extensions: 2894
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2634
Number of HSP's gapped (non-prelim): 98
length of query: 966
length of database: 14,973,337
effective HSP length: 108
effective length of query: 858
effective length of database: 8,214,913
effective search space: 7048395354
effective search space used: 7048395354
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)