Query 002104
Match_columns 966
No_of_seqs 455 out of 2220
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 16:36:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002104.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002104hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0239 Kinesin (KAR3 subfamil 100.0 7.8E-86 1.7E-90 774.5 31.9 355 72-432 282-647 (670)
2 KOG0243 Kinesin-like protein [ 100.0 1.4E-84 2.9E-89 771.8 33.9 332 98-434 46-399 (1041)
3 KOG4280 Kinesin-like protein [ 100.0 4.4E-85 9.5E-90 749.3 26.1 327 100-433 4-344 (574)
4 KOG0245 Kinesin-like protein [ 100.0 2.4E-82 5.1E-87 740.9 22.5 380 101-489 4-425 (1221)
5 cd01370 KISc_KIP3_like Kinesin 100.0 3.2E-80 6.9E-85 680.2 33.4 316 102-425 1-338 (338)
6 cd01373 KISc_KLP2_like Kinesin 100.0 1E-79 2.2E-84 676.1 34.6 316 101-425 1-337 (337)
7 KOG0240 Kinesin (SMY1 subfamil 100.0 2.4E-80 5.2E-85 696.7 29.9 321 99-428 5-334 (607)
8 PLN03188 kinesin-12 family pro 100.0 5.3E-79 1.1E-83 729.8 37.4 356 89-463 82-468 (1320)
9 KOG0242 Kinesin-like protein [ 100.0 7.1E-79 1.5E-83 717.5 32.4 351 100-461 5-365 (675)
10 cd01368 KISc_KIF23_like Kinesi 100.0 5.3E-78 1.1E-82 664.6 35.3 316 102-423 2-345 (345)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.1E-76 2.5E-81 655.5 35.8 325 101-430 1-354 (356)
12 cd01367 KISc_KIF2_like Kinesin 100.0 8.9E-77 1.9E-81 648.8 33.2 311 101-423 1-322 (322)
13 cd01376 KISc_KID_like Kinesin 100.0 1.5E-75 3.1E-80 638.2 34.1 311 102-423 1-319 (319)
14 cd01364 KISc_BimC_Eg5 Kinesin 100.0 2.4E-75 5.1E-80 643.5 35.6 325 101-430 2-348 (352)
15 cd01369 KISc_KHC_KIF5 Kinesin 100.0 2.5E-75 5.5E-80 636.5 34.6 317 101-425 2-325 (325)
16 cd01366 KISc_C_terminal Kinesi 100.0 5.3E-75 1.1E-79 634.5 36.8 323 100-428 1-329 (329)
17 cd01371 KISc_KIF3 Kinesin moto 100.0 4.5E-75 9.8E-80 637.7 33.9 318 101-425 1-333 (333)
18 cd01374 KISc_CENP_E Kinesin mo 100.0 6.9E-75 1.5E-79 632.6 34.2 314 102-425 1-321 (321)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 2.4E-74 5.3E-79 632.1 34.4 318 102-426 2-341 (341)
20 KOG0241 Kinesin-like protein [ 100.0 1.4E-74 3.1E-79 664.1 26.2 322 100-427 3-353 (1714)
21 cd01375 KISc_KIF9_like Kinesin 100.0 6.1E-73 1.3E-77 621.4 33.8 316 102-423 1-334 (334)
22 cd00106 KISc Kinesin motor dom 100.0 3.6E-70 7.8E-75 594.2 35.6 315 102-423 1-328 (328)
23 smart00129 KISc Kinesin motor, 100.0 4.9E-70 1.1E-74 595.8 35.9 321 102-430 1-333 (335)
24 PF00225 Kinesin: Kinesin moto 100.0 7.2E-70 1.6E-74 593.4 24.9 314 108-425 1-335 (335)
25 KOG0246 Kinesin-like protein [ 100.0 9.4E-66 2E-70 577.2 28.1 318 100-429 207-545 (676)
26 KOG0247 Kinesin-like protein [ 100.0 1.6E-65 3.4E-70 588.2 28.8 327 98-428 28-439 (809)
27 KOG0244 Kinesin-like protein [ 100.0 8.1E-64 1.8E-68 587.4 9.4 352 109-472 1-366 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 8.2E-61 1.8E-65 557.7 28.9 317 100-431 21-342 (568)
29 cd01363 Motor_domain Myosin an 100.0 1.6E-50 3.5E-55 410.2 17.9 176 159-404 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 98.7 6.7E-11 1.5E-15 140.0 -12.5 261 87-369 292-566 (568)
31 KOG0239 Kinesin (KAR3 subfamil 94.5 0.0066 1.4E-07 74.3 -1.6 89 141-242 25-113 (670)
32 PF00308 Bac_DnaA: Bacterial d 94.4 0.022 4.8E-07 60.4 2.3 50 142-193 3-52 (219)
33 COG0556 UvrB Helicase subunit 91.7 0.37 8E-06 57.7 6.9 87 142-232 3-98 (663)
34 PRK06620 hypothetical protein; 91.4 0.12 2.7E-06 54.8 2.5 50 141-193 10-62 (214)
35 PRK14086 dnaA chromosomal repl 90.1 0.16 3.5E-06 61.9 2.2 51 142-194 283-333 (617)
36 TIGR00362 DnaA chromosomal rep 90.1 0.2 4.3E-06 57.6 2.8 51 141-193 104-154 (405)
37 PRK00149 dnaA chromosomal repl 89.8 0.2 4.3E-06 58.5 2.6 51 141-193 116-166 (450)
38 PRK14088 dnaA chromosomal repl 89.7 0.2 4.3E-06 58.8 2.5 50 141-193 99-148 (440)
39 PRK06893 DNA replication initi 89.3 0.3 6.6E-06 52.0 3.3 49 141-194 10-58 (229)
40 PRK12377 putative replication 89.1 0.32 6.8E-06 53.2 3.3 49 145-194 72-120 (248)
41 COG0593 DnaA ATPase involved i 89.0 0.47 1E-05 55.5 4.7 51 141-193 81-131 (408)
42 PRK08116 hypothetical protein; 88.7 0.28 6E-06 53.9 2.6 51 142-193 80-132 (268)
43 PRK08084 DNA replication initi 88.4 0.34 7.4E-06 51.9 2.9 49 141-194 16-64 (235)
44 COG2805 PilT Tfp pilus assembl 87.8 0.29 6.3E-06 55.2 2.0 30 164-193 114-143 (353)
45 PRK07952 DNA replication prote 87.5 0.44 9.5E-06 52.0 3.1 50 144-194 69-118 (244)
46 TIGR01242 26Sp45 26S proteasom 87.5 3.1 6.7E-05 47.4 10.0 17 176-192 157-173 (364)
47 PRK14087 dnaA chromosomal repl 87.3 0.38 8.2E-06 56.7 2.7 49 143-193 111-159 (450)
48 TIGR03420 DnaA_homol_Hda DnaA 86.9 0.52 1.1E-05 48.9 3.2 48 141-193 9-56 (226)
49 COG1474 CDC6 Cdc6-related prot 86.9 1.1 2.4E-05 51.7 6.0 33 160-192 26-59 (366)
50 PRK05642 DNA replication initi 86.6 0.5 1.1E-05 50.7 2.9 51 141-193 13-63 (234)
51 PRK06835 DNA replication prote 86.1 0.41 8.9E-06 54.3 2.1 37 157-194 166-202 (329)
52 COG2804 PulE Type II secretory 85.9 0.37 8E-06 57.4 1.6 32 163-194 246-277 (500)
53 PRK08903 DnaA regulatory inact 85.8 0.72 1.6E-05 48.5 3.5 50 140-193 11-60 (227)
54 PRK09087 hypothetical protein; 85.7 0.5 1.1E-05 50.6 2.3 48 141-193 15-62 (226)
55 TIGR02928 orc1/cdc6 family rep 85.0 0.79 1.7E-05 51.3 3.6 39 154-192 18-57 (365)
56 COG1484 DnaC DNA replication p 83.1 1 2.2E-05 49.3 3.4 42 151-194 83-124 (254)
57 PRK00411 cdc6 cell division co 82.9 1.2 2.5E-05 50.6 3.8 38 155-192 34-72 (394)
58 PF04851 ResIII: Type III rest 82.0 0.96 2.1E-05 44.4 2.4 30 165-194 14-44 (184)
59 PRK12422 chromosomal replicati 81.4 1 2.3E-05 53.1 2.9 51 141-193 105-159 (445)
60 PTZ00454 26S protease regulato 80.9 3.3 7.2E-05 48.3 6.6 50 143-192 141-196 (398)
61 PRK08939 primosomal protein Dn 80.7 0.94 2E-05 50.9 2.1 51 144-194 124-175 (306)
62 cd00009 AAA The AAA+ (ATPases 79.6 1.2 2.7E-05 41.0 2.2 25 168-192 12-36 (151)
63 PRK08727 hypothetical protein; 79.4 1.4 3E-05 47.2 2.7 46 141-193 13-59 (233)
64 PRK06526 transposase; Provisio 78.5 1 2.2E-05 49.4 1.4 21 172-194 97-117 (254)
65 PTZ00112 origin recognition co 78.0 0.98 2.1E-05 57.3 1.3 38 156-193 760-799 (1164)
66 PRK08181 transposase; Validate 78.0 1.5 3.3E-05 48.5 2.6 21 172-194 105-125 (269)
67 cd00046 DEXDc DEAD-like helica 77.8 0.88 1.9E-05 41.5 0.6 17 178-194 3-19 (144)
68 PRK12402 replication factor C 76.1 1.5 3.2E-05 48.3 1.9 43 144-193 12-54 (337)
69 PRK06921 hypothetical protein; 74.7 2.3 5.1E-05 46.8 2.9 37 158-194 97-136 (266)
70 PF13245 AAA_19: Part of AAA d 74.6 1.6 3.5E-05 39.4 1.4 26 167-193 3-28 (76)
71 PRK10436 hypothetical protein; 74.1 1.5 3.3E-05 52.0 1.4 28 166-193 209-236 (462)
72 PF00270 DEAD: DEAD/DEAH box h 74.1 1.9 4E-05 42.2 1.8 26 166-193 7-32 (169)
73 PF13401 AAA_22: AAA domain; P 74.0 1.1 2.4E-05 42.2 0.2 18 175-192 4-21 (131)
74 TIGR02538 type_IV_pilB type IV 73.5 1.7 3.6E-05 52.8 1.5 29 166-194 307-335 (564)
75 smart00382 AAA ATPases associa 73.5 1.3 2.9E-05 40.1 0.6 18 176-193 3-20 (148)
76 TIGR02533 type_II_gspE general 73.0 1.9 4.1E-05 51.5 1.9 29 165-193 232-260 (486)
77 PRK03992 proteasome-activating 72.7 16 0.00035 42.3 9.2 18 175-192 165-182 (389)
78 PTZ00361 26 proteosome regulat 72.4 19 0.00041 42.9 9.8 16 177-192 219-234 (438)
79 PF13191 AAA_16: AAA ATPase do 72.4 1.3 2.8E-05 44.0 0.2 33 160-192 9-41 (185)
80 smart00053 DYNc Dynamin, GTPas 71.6 7.6 0.00016 42.5 5.9 54 272-338 85-138 (240)
81 TIGR01420 pilT_fam pilus retra 71.4 2.1 4.6E-05 48.6 1.7 28 166-193 113-140 (343)
82 PF01637 Arch_ATPase: Archaeal 71.3 1.9 4E-05 44.0 1.1 30 163-192 8-37 (234)
83 PF12846 AAA_10: AAA-like doma 71.0 1.6 3.4E-05 46.5 0.6 19 175-193 1-19 (304)
84 PF01935 DUF87: Domain of unkn 70.6 1.6 3.5E-05 45.8 0.5 17 177-193 25-41 (229)
85 cd01131 PilT Pilus retraction 70.0 1.7 3.8E-05 45.3 0.6 19 175-193 1-19 (198)
86 PF13604 AAA_30: AAA domain; P 69.4 2.7 5.8E-05 44.0 1.8 29 165-193 8-36 (196)
87 TIGR03015 pepcterm_ATPase puta 69.2 3.2 7E-05 44.3 2.4 25 168-192 36-60 (269)
88 TIGR02524 dot_icm_DotB Dot/Icm 68.2 2.8 6.1E-05 48.3 1.8 21 173-193 132-152 (358)
89 TIGR02525 plasmid_TraJ plasmid 67.8 2.8 6.1E-05 48.5 1.7 20 174-193 148-167 (372)
90 cd01129 PulE-GspE PulE/GspE Th 67.3 3.1 6.8E-05 45.7 1.9 29 165-193 70-98 (264)
91 KOG0727 26S proteasome regulat 67.0 15 0.00032 41.2 6.8 74 144-217 152-248 (408)
92 PF00437 T2SE: Type II/IV secr 66.5 2.5 5.4E-05 45.7 0.9 30 163-193 116-145 (270)
93 TIGR00635 ruvB Holliday juncti 65.5 4.5 9.9E-05 44.3 2.7 40 154-193 7-48 (305)
94 PF13086 AAA_11: AAA domain; P 65.4 3.3 7.2E-05 42.1 1.5 28 166-194 9-36 (236)
95 COG5008 PilU Tfp pilus assembl 65.0 4.4 9.5E-05 45.6 2.4 34 160-193 110-145 (375)
96 PF01695 IstB_IS21: IstB-like 64.5 4.2 9E-05 42.2 2.1 19 176-194 48-66 (178)
97 KOG0989 Replication factor C, 64.5 5.1 0.00011 45.7 2.8 37 157-193 37-75 (346)
98 TIGR02782 TrbB_P P-type conjug 63.2 4.5 9.9E-05 45.3 2.2 29 164-193 122-150 (299)
99 PF00004 AAA: ATPase family as 63.0 2.7 5.9E-05 39.3 0.3 15 178-192 1-15 (132)
100 PRK13894 conjugal transfer ATP 62.2 4.6 9.9E-05 45.8 2.0 29 164-193 138-166 (319)
101 PLN03025 replication factor C 62.0 4.9 0.00011 44.9 2.2 42 145-193 11-52 (319)
102 PF05673 DUF815: Protein of un 61.7 19 0.00041 40.0 6.4 129 144-308 24-155 (249)
103 PF00580 UvrD-helicase: UvrD/R 60.7 3.7 8E-05 44.1 0.9 20 174-193 12-31 (315)
104 PF13207 AAA_17: AAA domain; P 60.5 3.3 7.2E-05 38.7 0.5 16 177-192 1-16 (121)
105 PF13479 AAA_24: AAA domain 60.4 3.5 7.7E-05 43.5 0.7 20 175-194 3-22 (213)
106 PF05970 PIF1: PIF1-like helic 60.0 5.8 0.00013 45.5 2.3 36 154-192 4-39 (364)
107 PF00448 SRP54: SRP54-type pro 59.8 3.3 7.1E-05 43.6 0.3 17 177-193 3-19 (196)
108 smart00487 DEXDc DEAD-like hel 59.5 6.4 0.00014 38.3 2.3 26 168-194 18-43 (201)
109 cd01130 VirB11-like_ATPase Typ 58.0 6.7 0.00015 40.4 2.2 30 163-193 14-43 (186)
110 PF06309 Torsin: Torsin; Inte 57.9 4.3 9.3E-05 40.7 0.7 26 178-213 56-81 (127)
111 PRK12723 flagellar biosynthesi 57.8 8.6 0.00019 45.0 3.3 19 175-193 174-192 (388)
112 COG4962 CpaF Flp pilus assembl 57.6 5.9 0.00013 45.7 1.9 74 163-240 162-268 (355)
113 PRK13833 conjugal transfer pro 57.5 6.5 0.00014 44.9 2.2 29 164-193 134-162 (323)
114 KOG0340 ATP-dependent RNA heli 56.2 7.9 0.00017 45.0 2.5 29 165-195 36-64 (442)
115 TIGR03499 FlhF flagellar biosy 56.0 10 0.00022 42.1 3.3 18 177-194 196-213 (282)
116 PRK04195 replication factor C 55.9 9.2 0.0002 45.5 3.2 38 156-193 19-57 (482)
117 KOG4005 Transcription factor X 55.7 33 0.00071 37.9 6.9 54 434-487 83-136 (292)
118 PRK13900 type IV secretion sys 55.4 7.4 0.00016 44.4 2.2 30 163-193 149-178 (332)
119 PRK13341 recombination factor 55.2 7.5 0.00016 48.9 2.4 45 145-193 26-70 (725)
120 PRK13851 type IV secretion sys 54.5 7.4 0.00016 44.7 2.0 30 163-193 151-180 (344)
121 PF05496 RuvB_N: Holliday junc 54.4 13 0.00029 40.8 3.8 41 151-191 24-66 (233)
122 PTZ00424 helicase 45; Provisio 54.4 7 0.00015 44.3 1.8 26 165-192 57-82 (401)
123 PRK11776 ATP-dependent RNA hel 54.3 7.5 0.00016 45.5 2.1 25 166-192 34-58 (460)
124 cd00268 DEADc DEAD-box helicas 54.2 8.3 0.00018 39.3 2.2 24 166-191 29-52 (203)
125 PHA02544 44 clamp loader, smal 54.1 7.7 0.00017 42.8 2.0 22 172-193 39-61 (316)
126 PF03215 Rad17: Rad17 cell cyc 54.0 8.1 0.00017 46.8 2.3 31 162-192 30-62 (519)
127 TIGR00631 uvrb excinuclease AB 53.9 18 0.00038 45.1 5.2 87 144-234 2-97 (655)
128 PF01580 FtsK_SpoIIIE: FtsK/Sp 53.9 4.6 9.9E-05 41.8 0.2 17 177-193 40-56 (205)
129 PRK13342 recombination factor 53.8 7.2 0.00016 45.3 1.8 38 156-193 17-54 (413)
130 TIGR02881 spore_V_K stage V sp 53.0 12 0.00027 40.6 3.3 17 176-192 43-59 (261)
131 PF00063 Myosin_head: Myosin h 52.3 8.4 0.00018 47.8 2.1 36 157-192 66-102 (689)
132 PRK00080 ruvB Holliday junctio 52.0 9.3 0.0002 42.9 2.2 39 155-193 29-69 (328)
133 PF13671 AAA_33: AAA domain; P 51.5 6.2 0.00014 37.8 0.7 15 178-192 2-16 (143)
134 PF02562 PhoH: PhoH-like prote 51.3 9.4 0.0002 41.0 2.1 19 174-192 18-36 (205)
135 PHA02653 RNA helicase NPH-II; 51.3 18 0.00038 45.3 4.7 32 155-191 164-195 (675)
136 PRK11192 ATP-dependent RNA hel 50.9 9.1 0.0002 44.3 2.0 26 165-192 30-55 (434)
137 TIGR01241 FtsH_fam ATP-depende 50.6 11 0.00025 44.8 2.8 47 142-192 50-105 (495)
138 COG2256 MGS1 ATPase related to 50.5 8.6 0.00019 45.3 1.7 43 145-191 22-64 (436)
139 PF00910 RNA_helicase: RNA hel 50.4 5.4 0.00012 37.6 0.1 26 178-213 1-26 (107)
140 PF08172 CASP_C: CASP C termin 50.2 32 0.0007 38.1 6.0 47 442-488 87-133 (248)
141 PRK11448 hsdR type I restricti 50.2 10 0.00023 49.8 2.6 30 164-194 423-452 (1123)
142 TIGR00348 hsdR type I site-spe 50.0 11 0.00025 46.7 2.8 31 163-194 247-282 (667)
143 PRK10865 protein disaggregatio 49.6 14 0.0003 47.3 3.5 44 145-192 566-615 (857)
144 PF13238 AAA_18: AAA domain; P 49.5 7 0.00015 36.3 0.7 15 178-192 1-15 (129)
145 PRK06547 hypothetical protein; 49.3 12 0.00026 38.7 2.4 29 164-192 4-32 (172)
146 PF00170 bZIP_1: bZIP transcri 49.2 46 0.001 29.0 5.6 40 437-476 22-61 (64)
147 KOG0926 DEAH-box RNA helicase 49.1 11 0.00023 47.8 2.2 35 175-209 271-319 (1172)
148 PF07728 AAA_5: AAA domain (dy 49.1 6.2 0.00014 38.0 0.3 15 178-192 2-16 (139)
149 PRK04837 ATP-dependent RNA hel 48.0 10 0.00023 43.8 1.9 26 165-192 37-62 (423)
150 PRK09183 transposase/IS protei 47.9 10 0.00022 41.6 1.7 21 172-194 101-121 (259)
151 PRK10803 tol-pal system protei 47.8 33 0.00071 38.1 5.6 46 442-487 55-100 (263)
152 PRK13764 ATPase; Provisional 46.5 9.9 0.00021 46.9 1.5 20 174-193 256-275 (602)
153 PRK00440 rfc replication facto 46.4 11 0.00024 41.1 1.8 21 172-192 35-55 (319)
154 PRK10590 ATP-dependent RNA hel 46.1 12 0.00027 43.9 2.2 26 165-192 30-55 (456)
155 PF04977 DivIC: Septum formati 45.1 1E+02 0.0022 27.2 7.3 42 442-483 18-59 (80)
156 PRK10536 hypothetical protein; 44.9 11 0.00025 41.9 1.5 41 143-192 51-91 (262)
157 smart00338 BRLZ basic region l 44.1 66 0.0014 28.0 5.8 39 437-475 22-60 (65)
158 PRK14961 DNA polymerase III su 44.0 15 0.00033 42.0 2.4 41 145-192 14-55 (363)
159 PHA00729 NTP-binding motif con 43.6 16 0.00035 39.9 2.4 29 165-193 7-35 (226)
160 PF06414 Zeta_toxin: Zeta toxi 43.5 9.3 0.0002 39.7 0.6 19 174-192 14-32 (199)
161 CHL00176 ftsH cell division pr 43.5 14 0.0003 45.9 2.1 46 143-192 179-233 (638)
162 COG2841 Uncharacterized protei 43.0 68 0.0015 29.5 5.7 57 13-83 5-63 (72)
163 smart00242 MYSc Myosin. Large 42.7 19 0.00041 45.0 3.1 36 157-192 73-109 (677)
164 cd01383 MYSc_type_VIII Myosin 42.5 20 0.00044 44.8 3.3 36 157-192 73-109 (677)
165 cd01384 MYSc_type_XI Myosin mo 41.9 20 0.00044 44.8 3.2 35 158-192 70-105 (674)
166 cd01378 MYSc_type_I Myosin mot 41.9 21 0.00045 44.7 3.3 35 158-192 68-103 (674)
167 PRK14963 DNA polymerase III su 41.8 15 0.00032 44.4 2.0 42 145-192 12-53 (504)
168 cd00124 MYSc Myosin motor doma 41.6 20 0.00043 44.8 3.1 36 157-192 67-103 (679)
169 cd01381 MYSc_type_VII Myosin m 41.5 22 0.00048 44.5 3.4 36 157-192 67-103 (671)
170 cd01385 MYSc_type_IX Myosin mo 41.5 21 0.00046 44.8 3.2 36 157-192 75-111 (692)
171 cd01387 MYSc_type_XV Myosin mo 41.3 22 0.00047 44.5 3.3 36 157-192 68-104 (677)
172 PF07724 AAA_2: AAA domain (Cd 40.9 10 0.00023 39.1 0.5 17 176-192 4-20 (171)
173 KOG0728 26S proteasome regulat 40.7 1.2E+02 0.0027 34.3 8.5 17 175-191 181-197 (404)
174 TIGR00614 recQ_fam ATP-depende 40.6 18 0.00038 42.8 2.3 26 165-192 18-43 (470)
175 PRK14722 flhF flagellar biosyn 40.4 11 0.00025 43.8 0.7 19 175-193 137-155 (374)
176 PRK05703 flhF flagellar biosyn 40.0 22 0.00048 42.0 3.0 18 176-193 222-239 (424)
177 PRK00771 signal recognition pa 40.0 27 0.00059 41.6 3.7 19 175-193 95-113 (437)
178 TIGR01817 nifA Nif-specific re 39.8 18 0.00039 43.5 2.2 44 143-191 192-235 (534)
179 PRK11034 clpA ATP-dependent Cl 39.7 26 0.00056 44.5 3.7 37 156-192 463-505 (758)
180 PRK11889 flhF flagellar biosyn 39.6 23 0.0005 42.1 3.0 18 176-193 242-259 (436)
181 COG1222 RPT1 ATP-dependent 26S 39.4 21 0.00045 41.8 2.5 61 157-217 161-244 (406)
182 cd01120 RecA-like_NTPases RecA 39.3 11 0.00025 35.9 0.4 16 178-193 2-17 (165)
183 COG1223 Predicted ATPase (AAA+ 39.3 12 0.00026 42.2 0.6 18 175-192 151-168 (368)
184 COG1201 Lhr Lhr-like helicases 39.0 19 0.00042 45.9 2.4 25 166-192 30-54 (814)
185 smart00763 AAA_PrkA PrkA AAA d 38.9 28 0.0006 40.6 3.4 47 142-192 44-95 (361)
186 PF05729 NACHT: NACHT domain 38.6 13 0.00028 36.0 0.6 16 177-192 2-17 (166)
187 cd01382 MYSc_type_VI Myosin mo 38.6 23 0.00051 44.6 3.0 35 158-192 73-108 (717)
188 PRK11634 ATP-dependent RNA hel 38.5 18 0.00038 44.8 2.0 25 166-192 36-60 (629)
189 cd01380 MYSc_type_V Myosin mot 38.2 25 0.00055 44.1 3.2 35 158-192 68-103 (691)
190 KOG2543 Origin recognition com 38.1 12 0.00027 43.8 0.5 37 177-231 32-68 (438)
191 TIGR02902 spore_lonB ATP-depen 38.0 21 0.00046 43.2 2.5 41 144-191 62-102 (531)
192 TIGR02788 VirB11 P-type DNA tr 37.8 21 0.00045 40.1 2.2 30 163-193 133-162 (308)
193 PRK11331 5-methylcytosine-spec 37.8 20 0.00043 43.0 2.1 36 390-429 320-357 (459)
194 cd01377 MYSc_type_II Myosin mo 37.6 26 0.00056 44.0 3.2 36 157-192 72-108 (693)
195 CHL00081 chlI Mg-protoporyphyr 37.4 14 0.00031 42.6 0.9 45 141-192 11-55 (350)
196 PRK00888 ftsB cell division pr 37.4 1.3E+02 0.0029 29.1 7.3 42 442-483 28-69 (105)
197 COG1419 FlhF Flagellar GTP-bin 37.3 24 0.00052 41.7 2.6 19 175-193 203-221 (407)
198 PRK14974 cell division protein 37.2 29 0.00063 39.9 3.3 19 175-193 140-158 (336)
199 TIGR00602 rad24 checkpoint pro 37.0 19 0.00042 44.7 2.0 38 156-193 89-128 (637)
200 TIGR00376 DNA helicase, putati 36.9 19 0.00041 44.7 1.8 18 177-194 175-192 (637)
201 PRK01297 ATP-dependent RNA hel 36.8 17 0.00038 42.8 1.5 26 165-192 116-141 (475)
202 PRK06696 uridine kinase; Valid 36.6 30 0.00066 36.7 3.1 35 158-192 5-39 (223)
203 PRK14962 DNA polymerase III su 36.4 23 0.00051 42.4 2.4 41 145-192 12-53 (472)
204 PRK10416 signal recognition pa 36.1 31 0.00068 39.2 3.3 18 176-193 115-132 (318)
205 KOG0335 ATP-dependent RNA heli 36.0 12 0.00026 44.9 0.0 26 167-194 105-130 (482)
206 PF06005 DUF904: Protein of un 35.9 96 0.0021 28.4 5.7 41 444-484 21-61 (72)
207 PF12775 AAA_7: P-loop contain 35.9 17 0.00038 40.3 1.2 28 165-193 24-51 (272)
208 PRK04537 ATP-dependent RNA hel 35.6 22 0.00047 43.5 2.1 26 165-192 38-63 (572)
209 TIGR00064 ftsY signal recognit 35.2 32 0.00069 38.2 3.1 18 176-193 73-90 (272)
210 PF02534 T4SS-DNA_transf: Type 34.9 27 0.00058 41.0 2.6 17 176-192 45-61 (469)
211 TIGR03345 VI_ClpV1 type VI sec 34.6 35 0.00076 43.9 3.7 42 147-192 566-613 (852)
212 PLN00206 DEAD-box ATP-dependen 34.5 28 0.0006 41.9 2.7 26 165-192 150-175 (518)
213 TIGR02237 recomb_radB DNA repa 34.4 20 0.00044 37.1 1.4 25 168-192 2-29 (209)
214 TIGR03819 heli_sec_ATPase heli 33.9 26 0.00057 40.2 2.3 30 163-193 167-196 (340)
215 PRK11664 ATP-dependent RNA hel 33.9 28 0.0006 44.5 2.7 32 159-192 6-37 (812)
216 COG1219 ClpX ATP-dependent pro 33.9 18 0.00039 41.8 0.9 17 175-191 97-113 (408)
217 PRK10820 DNA-binding transcrip 33.5 23 0.0005 42.7 1.8 45 142-191 199-243 (520)
218 cd02021 GntK Gluconate kinase 33.5 17 0.00036 35.6 0.6 15 178-192 2-16 (150)
219 PRK00131 aroK shikimate kinase 33.0 19 0.00042 35.4 0.9 17 176-192 5-21 (175)
220 cd01123 Rad51_DMC1_radA Rad51_ 32.8 26 0.00056 36.8 1.8 28 165-192 6-36 (235)
221 PF00735 Septin: Septin; Inte 32.7 13 0.00029 41.4 -0.3 20 172-191 1-20 (281)
222 TIGR02639 ClpA ATP-dependent C 32.6 32 0.0007 43.2 2.9 37 156-192 459-501 (731)
223 TIGR00618 sbcc exonuclease Sbc 32.5 38 0.00083 44.2 3.7 17 176-192 27-43 (1042)
224 TIGR01618 phage_P_loop phage n 32.5 17 0.00036 39.5 0.4 20 175-194 12-31 (220)
225 TIGR02903 spore_lon_C ATP-depe 32.4 27 0.00058 43.2 2.1 43 143-192 150-192 (615)
226 COG2204 AtoC Response regulato 32.4 70 0.0015 38.6 5.5 104 172-290 161-266 (464)
227 TIGR01359 UMP_CMP_kin_fam UMP- 32.4 20 0.00043 36.2 0.9 14 178-191 2-15 (183)
228 PRK04328 hypothetical protein; 32.4 30 0.00064 37.6 2.3 25 166-190 11-38 (249)
229 PF13476 AAA_23: AAA domain; P 32.4 17 0.00037 36.3 0.4 18 176-193 20-37 (202)
230 TIGR01243 CDC48 AAA family ATP 32.3 32 0.00068 43.2 2.8 17 176-192 213-229 (733)
231 KOG1803 DNA helicase [Replicat 32.2 38 0.00082 41.9 3.2 18 176-193 202-219 (649)
232 PRK06067 flagellar accessory p 32.2 30 0.00066 36.7 2.3 28 165-192 12-42 (234)
233 cd01379 MYSc_type_III Myosin m 31.8 36 0.00078 42.5 3.1 35 158-192 68-103 (653)
234 cd01386 MYSc_type_XVIII Myosin 31.6 35 0.00075 43.5 3.0 36 157-192 67-103 (767)
235 smart00338 BRLZ basic region l 31.3 95 0.002 27.1 4.8 42 444-485 22-63 (65)
236 TIGR02030 BchI-ChlI magnesium 31.1 35 0.00076 39.3 2.6 42 144-192 1-42 (337)
237 cd01126 TraG_VirD4 The TraG/Tr 31.1 24 0.00053 40.4 1.4 16 178-193 2-17 (384)
238 PF06048 DUF927: Domain of unk 31.0 36 0.00078 37.9 2.7 33 164-197 183-221 (286)
239 KOG2373 Predicted mitochondria 30.9 37 0.00079 39.8 2.7 28 165-193 261-291 (514)
240 PLN00020 ribulose bisphosphate 30.9 39 0.00084 40.0 2.9 74 142-215 110-205 (413)
241 PF13173 AAA_14: AAA domain 30.7 21 0.00045 34.5 0.7 17 177-193 4-20 (128)
242 PRK14723 flhF flagellar biosyn 30.7 36 0.00078 43.3 2.9 18 176-193 186-203 (767)
243 KOG1514 Origin recognition com 30.5 45 0.00098 42.0 3.5 48 158-215 403-452 (767)
244 TIGR02397 dnaX_nterm DNA polym 30.4 35 0.00076 38.1 2.5 35 155-192 18-53 (355)
245 PRK07261 topology modulation p 30.3 22 0.00048 36.4 0.8 15 178-192 3-17 (171)
246 PRK13729 conjugal transfer pil 30.3 1E+02 0.0022 37.3 6.3 44 443-486 78-121 (475)
247 smart00489 DEXDc3 DEAD-like he 30.3 33 0.00071 38.3 2.2 36 152-192 9-44 (289)
248 smart00488 DEXDc2 DEAD-like he 30.3 33 0.00071 38.3 2.2 36 152-192 9-44 (289)
249 TIGR01389 recQ ATP-dependent D 30.2 32 0.00069 41.9 2.3 26 165-192 20-45 (591)
250 cd01428 ADK Adenylate kinase ( 30.2 22 0.00049 35.9 0.9 15 178-192 2-16 (194)
251 PRK14952 DNA polymerase III su 30.1 31 0.00067 42.6 2.1 41 145-192 11-52 (584)
252 cd01127 TrwB Bacterial conjuga 30.0 20 0.00043 41.8 0.5 17 176-192 43-59 (410)
253 cd01850 CDC_Septin CDC/Septin. 30.0 21 0.00046 39.5 0.7 21 172-192 1-21 (276)
254 PRK15429 formate hydrogenlyase 30.0 32 0.00069 42.8 2.3 42 144-190 373-414 (686)
255 TIGR02640 gas_vesic_GvpN gas v 29.7 36 0.00077 37.3 2.3 26 165-192 13-38 (262)
256 COG3074 Uncharacterized protei 29.6 1E+02 0.0022 28.4 4.7 33 446-478 23-55 (79)
257 TIGR03158 cas3_cyano CRISPR-as 29.4 39 0.00084 38.7 2.7 26 167-192 6-31 (357)
258 PRK10917 ATP-dependent DNA hel 29.3 39 0.00085 42.2 2.9 40 150-192 260-299 (681)
259 PF15290 Syntaphilin: Golgi-lo 29.3 76 0.0016 36.0 4.7 42 436-477 63-104 (305)
260 PF02456 Adeno_IVa2: Adenoviru 29.2 20 0.00042 41.3 0.2 34 178-211 90-139 (369)
261 PF00158 Sigma54_activat: Sigm 29.1 46 0.00099 34.4 2.9 104 172-290 19-124 (168)
262 cd00464 SK Shikimate kinase (S 28.9 25 0.00054 34.1 0.9 16 177-192 1-16 (154)
263 PF00931 NB-ARC: NB-ARC domain 28.8 46 0.001 35.8 3.0 30 163-192 5-36 (287)
264 PRK05580 primosome assembly pr 28.6 36 0.00079 42.5 2.4 36 151-192 144-179 (679)
265 KOG3119 Basic region leucine z 28.5 95 0.0021 34.7 5.4 43 436-478 210-252 (269)
266 PRK12724 flagellar biosynthesi 28.5 45 0.00098 39.8 3.0 18 176-193 224-241 (432)
267 COG4096 HsdR Type I site-speci 28.3 54 0.0012 42.0 3.7 38 156-194 165-204 (875)
268 PF10236 DAP3: Mitochondrial r 28.3 42 0.00091 37.9 2.6 23 171-193 19-41 (309)
269 cd01124 KaiC KaiC is a circadi 28.3 28 0.0006 35.0 1.1 15 178-192 2-16 (187)
270 PRK11057 ATP-dependent DNA hel 28.3 35 0.00077 41.9 2.2 25 166-192 33-57 (607)
271 PRK08118 topology modulation p 28.2 25 0.00055 35.9 0.8 13 178-190 4-16 (167)
272 KOG1937 Uncharacterized conser 28.1 1.1E+02 0.0023 36.9 5.8 89 5-99 290-378 (521)
273 KOG4196 bZIP transcription fac 28.0 1.8E+02 0.0039 29.7 6.6 33 451-483 77-109 (135)
274 cd02020 CMPK Cytidine monophos 27.9 26 0.00057 33.5 0.9 14 178-191 2-15 (147)
275 TIGR02880 cbbX_cfxQ probable R 27.9 23 0.0005 39.3 0.5 16 177-192 60-75 (284)
276 PRK09361 radB DNA repair and r 27.9 42 0.00091 35.3 2.4 28 165-192 10-40 (225)
277 PRK10884 SH3 domain-containing 27.8 1.7E+02 0.0037 31.7 6.9 36 446-481 130-165 (206)
278 TIGR01313 therm_gnt_kin carboh 27.8 23 0.0005 35.2 0.4 14 178-191 1-14 (163)
279 TIGR02746 TraC-F-type type-IV 27.7 23 0.00051 44.4 0.6 19 175-193 430-448 (797)
280 CHL00181 cbbX CbbX; Provisiona 27.5 26 0.00056 39.2 0.8 15 178-192 62-76 (287)
281 PRK06995 flhF flagellar biosyn 27.5 23 0.0005 42.7 0.5 18 176-193 257-274 (484)
282 PRK05342 clpX ATP-dependent pr 27.3 38 0.00082 40.0 2.2 18 175-192 108-125 (412)
283 TIGR02688 conserved hypothetic 27.3 45 0.00098 39.9 2.7 47 166-215 202-252 (449)
284 cd01983 Fer4_NifH The Fer4_Nif 27.3 26 0.00056 30.4 0.6 16 178-193 2-17 (99)
285 PF07716 bZIP_2: Basic region 27.2 2E+02 0.0042 24.4 5.9 31 438-468 22-52 (54)
286 COG0630 VirB11 Type IV secreto 27.2 24 0.00051 40.1 0.4 19 175-193 143-161 (312)
287 KOG0354 DEAD-box like helicase 27.1 40 0.00086 42.7 2.3 42 147-191 44-92 (746)
288 PF10205 KLRAQ: Predicted coil 27.1 1.7E+02 0.0036 28.8 6.0 46 442-487 27-72 (102)
289 PRK08233 hypothetical protein; 27.1 27 0.00059 34.8 0.8 15 178-192 6-20 (182)
290 PHA02244 ATPase-like protein 27.0 50 0.0011 38.9 3.0 19 172-192 118-136 (383)
291 PF07693 KAP_NTPase: KAP famil 27.0 38 0.00083 37.2 2.0 20 173-192 18-37 (325)
292 PRK11608 pspF phage shock prot 26.9 42 0.00091 38.0 2.3 41 146-191 5-45 (326)
293 PF13555 AAA_29: P-loop contai 26.8 25 0.00054 31.2 0.4 15 178-192 26-40 (62)
294 PF06745 KaiC: KaiC; InterPro 26.8 41 0.00089 35.4 2.1 24 167-190 8-34 (226)
295 PF06156 DUF972: Protein of un 26.8 1.3E+02 0.0029 29.4 5.4 32 443-474 24-55 (107)
296 PF02202 Tachykinin: Tachykini 26.7 23 0.00049 21.9 0.1 7 959-965 5-11 (11)
297 TIGR02322 phosphon_PhnN phosph 26.7 25 0.00054 35.5 0.5 16 177-192 3-18 (179)
298 PTZ00110 helicase; Provisional 26.3 35 0.00076 41.4 1.7 25 166-192 160-184 (545)
299 cd01393 recA_like RecA is a b 26.0 43 0.00094 34.9 2.1 29 165-193 6-37 (226)
300 PTZ00014 myosin-A; Provisional 26.0 54 0.0012 42.2 3.3 35 158-192 165-200 (821)
301 cd01394 radB RadB. The archaea 25.9 45 0.00098 34.8 2.2 27 166-192 7-36 (218)
302 TIGR00231 small_GTP small GTP- 25.9 26 0.00057 32.5 0.4 15 178-192 4-18 (161)
303 PF08477 Miro: Miro-like prote 25.9 25 0.00055 32.4 0.3 15 178-192 2-16 (119)
304 PRK06217 hypothetical protein; 25.7 30 0.00064 35.5 0.8 14 178-191 4-17 (183)
305 PRK01172 ski2-like helicase; P 25.6 45 0.00097 41.4 2.4 22 168-191 32-53 (674)
306 PRK08691 DNA polymerase III su 25.4 41 0.00088 42.5 2.0 42 145-193 14-56 (709)
307 PHA02624 large T antigen; Prov 25.4 51 0.0011 41.1 2.8 27 166-192 420-448 (647)
308 PF00485 PRK: Phosphoribulokin 25.2 27 0.00059 36.1 0.4 15 178-192 2-16 (194)
309 KOG0735 AAA+-type ATPase [Post 25.2 37 0.00081 42.9 1.6 37 178-214 704-757 (952)
310 COG1125 OpuBA ABC-type proline 25.1 29 0.00062 39.2 0.6 13 180-192 32-44 (309)
311 TIGR03744 traC_PFL_4706 conjug 25.1 28 0.0006 44.9 0.5 20 174-193 474-493 (893)
312 PHA01747 putative ATP-dependen 25.0 40 0.00086 39.8 1.7 30 163-192 178-207 (425)
313 PRK14531 adenylate kinase; Pro 24.9 32 0.00069 35.3 0.9 15 177-191 4-18 (183)
314 PF10412 TrwB_AAD_bind: Type I 24.9 26 0.00056 40.7 0.2 17 176-192 16-32 (386)
315 COG0419 SbcC ATPase involved i 24.8 52 0.0011 42.4 2.9 35 175-211 25-66 (908)
316 cd01853 Toc34_like Toc34-like 24.8 33 0.00072 37.6 1.0 40 151-192 9-48 (249)
317 PRK11388 DNA-binding transcrip 24.7 42 0.00091 41.3 2.0 43 143-190 321-363 (638)
318 TIGR03346 chaperone_ClpB ATP-d 24.6 56 0.0012 42.0 3.1 42 147-192 565-612 (852)
319 TIGR01074 rep ATP-dependent DN 24.6 36 0.00078 41.9 1.4 20 174-193 13-32 (664)
320 PF00170 bZIP_1: bZIP transcri 24.4 1.6E+02 0.0035 25.6 5.0 42 443-484 21-62 (64)
321 COG3829 RocR Transcriptional r 24.3 51 0.0011 40.4 2.5 42 142-188 240-281 (560)
322 cd02023 UMPK Uridine monophosp 24.3 29 0.00063 35.7 0.4 15 178-192 2-16 (198)
323 CHL00195 ycf46 Ycf46; Provisio 24.3 29 0.00064 41.8 0.5 17 176-192 260-276 (489)
324 PRK13767 ATP-dependent helicas 24.2 40 0.00086 43.4 1.7 25 166-192 40-64 (876)
325 PRK10867 signal recognition pa 24.1 68 0.0015 38.3 3.5 19 175-193 100-118 (433)
326 KOG3859 Septins (P-loop GTPase 24.1 37 0.0008 38.7 1.2 27 166-192 32-59 (406)
327 TIGR03689 pup_AAA proteasome A 24.1 30 0.00065 42.1 0.5 14 178-191 219-232 (512)
328 TIGR02173 cyt_kin_arch cytidyl 24.1 34 0.00073 33.8 0.8 16 177-192 2-17 (171)
329 TIGR01360 aden_kin_iso1 adenyl 24.0 34 0.00074 34.3 0.9 16 177-192 5-20 (188)
330 TIGR03117 cas_csf4 CRISPR-asso 24.0 50 0.0011 41.2 2.4 32 156-192 2-33 (636)
331 PF14532 Sigma54_activ_2: Sigm 23.8 37 0.0008 33.2 1.0 21 172-192 18-38 (138)
332 TIGR02449 conserved hypothetic 23.5 1.5E+02 0.0033 26.8 4.7 42 445-486 4-45 (65)
333 PRK13889 conjugal transfer rel 23.5 42 0.00092 43.9 1.7 27 165-192 353-379 (988)
334 PRK14958 DNA polymerase III su 23.3 52 0.0011 39.9 2.4 41 145-192 14-55 (509)
335 cd01858 NGP_1 NGP-1. Autoanti 23.2 50 0.0011 32.8 1.9 20 173-192 100-119 (157)
336 COG1730 GIM5 Predicted prefold 23.2 3.2E+02 0.0069 28.3 7.5 45 440-484 93-137 (145)
337 TIGR00643 recG ATP-dependent D 23.1 60 0.0013 40.2 2.9 40 150-192 234-273 (630)
338 COG3074 Uncharacterized protei 23.1 2.3E+02 0.0049 26.2 5.6 43 443-485 27-69 (79)
339 TIGR02329 propionate_PrpR prop 23.0 49 0.0011 40.3 2.0 43 143-190 208-250 (526)
340 PF08537 NBP1: Fungal Nap bind 23.0 1.7E+02 0.0037 33.9 6.0 48 443-490 177-224 (323)
341 PRK14532 adenylate kinase; Pro 23.0 37 0.0008 34.6 0.9 15 177-191 2-16 (188)
342 PRK15424 propionate catabolism 23.0 51 0.0011 40.3 2.2 42 144-190 216-257 (538)
343 TIGR01650 PD_CobS cobaltochela 23.0 49 0.0011 38.1 2.0 41 150-192 39-81 (327)
344 PRK12726 flagellar biosynthesi 22.9 32 0.0007 40.6 0.5 18 176-193 207-224 (407)
345 PRK10865 protein disaggregatio 22.9 38 0.00083 43.5 1.2 43 145-194 176-218 (857)
346 KOG2264 Exostosin EXT1L [Signa 22.8 1.2E+02 0.0026 37.4 5.1 15 886-900 491-505 (907)
347 TIGR03817 DECH_helic helicase/ 22.8 50 0.0011 41.8 2.1 26 165-192 43-68 (742)
348 COG4026 Uncharacterized protei 22.6 1.9E+02 0.0042 32.0 6.1 43 445-487 146-188 (290)
349 PRK14721 flhF flagellar biosyn 22.6 34 0.00074 40.6 0.6 19 175-193 191-209 (420)
350 PRK14951 DNA polymerase III su 22.5 52 0.0011 41.0 2.1 41 145-192 14-55 (618)
351 PRK04040 adenylate kinase; Pro 22.5 38 0.00082 35.5 0.9 16 177-192 4-19 (188)
352 TIGR02639 ClpA ATP-dependent C 22.4 48 0.001 41.8 1.9 31 164-194 192-222 (731)
353 TIGR00929 VirB4_CagE type IV s 22.2 34 0.00075 42.7 0.6 19 175-193 434-452 (785)
354 TIGR03881 KaiC_arch_4 KaiC dom 22.1 57 0.0012 34.3 2.1 26 167-192 9-37 (229)
355 PRK05022 anaerobic nitric oxid 22.1 54 0.0012 39.5 2.1 42 145-191 185-226 (509)
356 PF07334 IFP_35_N: Interferon- 22.1 1.2E+02 0.0026 28.3 3.8 27 450-476 2-28 (76)
357 TIGR02236 recomb_radA DNA repa 22.0 62 0.0013 36.1 2.4 26 167-192 84-112 (310)
358 PRK14970 DNA polymerase III su 22.0 56 0.0012 37.2 2.2 41 145-192 15-56 (367)
359 TIGR02894 DNA_bind_RsfA transc 22.0 1.9E+02 0.0041 30.5 5.6 11 358-368 30-40 (161)
360 COG2433 Uncharacterized conser 21.9 1.7E+02 0.0036 36.5 6.1 42 443-484 424-465 (652)
361 PRK06305 DNA polymerase III su 21.6 57 0.0012 38.8 2.2 41 145-192 15-56 (451)
362 KOG0729 26S proteasome regulat 21.6 45 0.00098 37.8 1.3 43 172-214 206-267 (435)
363 PF04548 AIG1: AIG1 family; I 21.4 35 0.00075 36.1 0.3 16 177-192 2-17 (212)
364 TIGR02768 TraA_Ti Ti-type conj 21.3 54 0.0012 41.6 2.0 28 166-194 360-387 (744)
365 PF08298 AAA_PrkA: PrkA AAA do 21.2 1.5E+02 0.0033 34.7 5.4 61 148-212 62-143 (358)
366 TIGR01425 SRP54_euk signal rec 21.2 81 0.0018 37.7 3.3 19 175-193 100-118 (429)
367 cd02025 PanK Pantothenate kina 21.1 29 0.00062 37.2 -0.4 13 180-192 4-16 (220)
368 KOG0953 Mitochondrial RNA heli 21.1 70 0.0015 39.5 2.7 39 177-215 193-237 (700)
369 KOG0739 AAA+-type ATPase [Post 21.1 42 0.0009 38.7 0.9 74 145-218 131-226 (439)
370 PRK10246 exonuclease subunit S 21.1 82 0.0018 41.5 3.6 18 175-192 30-47 (1047)
371 KOG0652 26S proteasome regulat 21.0 44 0.00095 37.9 1.0 14 177-190 207-220 (424)
372 TIGR03346 chaperone_ClpB ATP-d 21.0 45 0.00098 42.8 1.3 32 163-194 182-213 (852)
373 PRK06762 hypothetical protein; 20.9 42 0.00092 33.4 0.8 15 177-191 4-18 (166)
374 PF10923 DUF2791: P-loop Domai 20.9 80 0.0017 37.6 3.1 36 157-192 31-66 (416)
375 PRK13169 DNA replication intia 20.8 2E+02 0.0044 28.4 5.4 32 443-474 24-55 (110)
376 TIGR02767 TraG-Ti Ti-type conj 20.8 48 0.001 41.3 1.4 17 176-192 212-228 (623)
377 COG5019 CDC3 Septin family pro 20.8 46 0.00099 39.0 1.1 21 172-192 20-40 (373)
378 cd00820 PEPCK_HprK Phosphoenol 20.8 40 0.00087 32.8 0.6 17 177-193 17-33 (107)
379 PRK03839 putative kinase; Prov 20.7 42 0.00092 34.0 0.8 14 178-191 3-16 (180)
380 TIGR03877 thermo_KaiC_1 KaiC d 20.7 68 0.0015 34.4 2.4 24 167-190 10-36 (237)
381 KOG0726 26S proteasome regulat 20.7 86 0.0019 36.2 3.2 40 177-216 221-277 (440)
382 KOG0330 ATP-dependent RNA heli 20.6 51 0.0011 39.1 1.5 26 165-192 90-115 (476)
383 TIGR01447 recD exodeoxyribonuc 20.5 55 0.0012 40.4 1.8 26 166-193 153-178 (586)
384 PRK00300 gmk guanylate kinase; 20.5 40 0.00086 34.7 0.5 17 176-192 6-22 (205)
385 TIGR03263 guanyl_kin guanylate 20.4 41 0.00089 33.8 0.6 16 177-192 3-18 (180)
386 PRK14955 DNA polymerase III su 20.4 70 0.0015 37.2 2.6 40 145-192 14-55 (397)
387 PRK14530 adenylate kinase; Pro 20.4 43 0.00094 35.2 0.8 16 177-192 5-20 (215)
388 PRK10884 SH3 domain-containing 20.4 1.5E+02 0.0033 32.1 4.8 35 4-38 89-123 (206)
389 TIGR01970 DEAH_box_HrpB ATP-de 20.3 70 0.0015 41.1 2.7 18 175-192 17-34 (819)
390 PF06005 DUF904: Protein of un 20.1 4.4E+02 0.0096 24.2 7.0 32 444-475 7-38 (72)
391 COG3883 Uncharacterized protei 20.1 2.9E+02 0.0064 31.2 7.1 44 443-486 40-83 (265)
392 PRK14969 DNA polymerase III su 20.1 64 0.0014 39.3 2.2 41 145-192 14-55 (527)
No 1
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=7.8e-86 Score=774.53 Aligned_cols=355 Identities=47% Similarity=0.737 Sum_probs=320.7
Q ss_pred HHHHHHHHHHHH---HHHHHHHhhhhhhccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCC-ceEEEeCCCCCc----e
Q 002104 72 KDELATLSACIN---QLNIQRRQILNEFLDSKGNIRVFCRIRPISMGENFGRLRPVIAKDSS-NVLLKLADNKSK----N 143 (966)
Q Consensus 72 ~~El~~l~~~~~---~~~~eRk~L~N~l~elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~-~v~l~~~~~k~k----~ 143 (966)
..++..+...+. ..+.+||+|||+|+|+||||||||||||+.+.+.......++..++. .+.+.......+ .
T Consensus 282 ~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (670)
T KOG0239|consen 282 QSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQS 361 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCcccc
Confidence 344444433333 44589999999999999999999999999998876544445555443 344444333332 4
Q ss_pred eecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceeccc-CCCCCCcHHHHHHHHHHHHHh--cCCee
Q 002104 144 YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG-TPDSPGIVPRAIEAIFKQAME--SNHAF 220 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G-~~e~pGIIPRale~LF~~i~e--~~~~f 220 (966)
|.||+||+|.++|++||.++.|+|+++|||||+||||||||||||||||.| +++++|||||+++.||..+.. .+|.|
T Consensus 362 f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y 441 (670)
T KOG0239|consen 362 FKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKY 441 (670)
T ss_pred ceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceE
Confidence 999999999999999999999999999999999999999999999999999 799999999999999998754 36899
Q ss_pred EEEEEEEEEecceeecccCCCCCCCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCC
Q 002104 221 RISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRT 300 (966)
Q Consensus 221 ~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~ 300 (966)
.+.+||+|||||.|+|||.+.. .+..+.|++++++..+|.+++.+.|.+.+++..+++.|..+|++++|.+|++
T Consensus 442 ~~~~s~~EIYNe~i~DlL~~~~------~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~ 515 (670)
T KOG0239|consen 442 DKTVSMLEIYNEAIRDLLSDES------YVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNER 515 (670)
T ss_pred EeeeehhHHHHHHHHHhccccc------cccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchh
Confidence 9999999999999999998764 2346899999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEEEEEecCCcCccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCC
Q 002104 301 SSRSHCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNS 380 (966)
Q Consensus 301 SSRSH~IftI~I~~~n~~~~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~hIPYRdS 380 (966)
|||||+||+|+|...+...+....+.|+|||||||||+.++++.|+|++|+++||+||++||+||.||+.+..|||||||
T Consensus 516 SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNS 595 (670)
T KOG0239|consen 516 SSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNS 595 (670)
T ss_pred hhccceEEEEEEeccccCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCccccc
Confidence 99999999999999999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCcceeEEEecCCCCCCHHHHHHHHHHHHHhhhcccCcCCc
Q 002104 381 KLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDS 432 (966)
Q Consensus 381 KLTrLLqDSLGGNSKTlMIa~ISPs~~~~eETLsTLrFAsRaK~I~l~~~~~ 432 (966)
|||+|||+||||++||+|+|+|||...++.||+++|+||+|++.+.+|+...
T Consensus 596 KLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~ 647 (670)
T KOG0239|consen 596 KLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARK 647 (670)
T ss_pred chHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccc
Confidence 9999999999999999999999999999999999999999999999988653
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-84 Score=771.79 Aligned_cols=332 Identities=39% Similarity=0.625 Sum_probs=298.1
Q ss_pred cCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCC-Cc-eEEEeC-CCC--CceeecceeeCCCCChHHHHHh-hHHHHHHHh
Q 002104 98 DSKGNIRVFCRIRPISMGENFGRLRPVIAKDS-SN-VLLKLA-DNK--SKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVL 171 (966)
Q Consensus 98 elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~-~~-v~l~~~-~~k--~k~F~FD~VF~p~asQedVF~e-V~PLV~svL 171 (966)
+..-||+|+|||||++..|.......||.+++ .. |.+... .++ .+.|+||+||+|.+.|++||+. |.|+|..|+
T Consensus 46 e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl 125 (1041)
T KOG0243|consen 46 EKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVL 125 (1041)
T ss_pred CCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHh
Confidence 44579999999999999998777777887777 33 333322 133 6889999999999999999998 799999999
Q ss_pred cCCcccEEeeccCCCCcceeccc--------CCCCCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEecceeecccCCCCC
Q 002104 172 DGYNACIFAYGQTGTGKSFTMEG--------TPDSPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPT 243 (966)
Q Consensus 172 dGyNvcIfAYGQTGSGKTyTM~G--------~~e~pGIIPRale~LF~~i~e~~~~f~VsVS~lEIYNE~V~DLL~~~~~ 243 (966)
.|||||||||||||+||||||+| .+..+||||||+.+||+.+...+..|.|+|||+|+|||.|+|||++...
T Consensus 126 ~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~ 205 (1041)
T KOG0243|consen 126 EGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDT 205 (1041)
T ss_pred ccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCccc
Confidence 99999999999999999999999 5678999999999999999988999999999999999999999998765
Q ss_pred CCCCCCCCcceeee-----cCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecC-
Q 002104 244 KATDPLPPCLSIHT-----EPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDA- 317 (966)
Q Consensus 244 ~~~~~~~~~L~Ire-----d~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~- 317 (966)
.. ..+.+.. +.+|||+|+||.++.|.++.|++.+|.+|...|++++|.||.+|||||+||+|+|.....
T Consensus 206 ~~-----~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t 280 (1041)
T KOG0243|consen 206 SD-----KKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENT 280 (1041)
T ss_pred cc-----cccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCC
Confidence 31 1122333 568999999999999999999999999999999999999999999999999999975432
Q ss_pred --CcCccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcc
Q 002104 318 --PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSK 395 (966)
Q Consensus 318 --~~~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~hIPYRdSKLTrLLqDSLGGNSK 395 (966)
.+.....|||+||||||||...++|+.+.|.+|++.||+||++||+||+||..+..|||||+|||||||||||||.+|
T Consensus 281 ~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTK 360 (1041)
T KOG0243|consen 281 PEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTK 360 (1041)
T ss_pred CcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCce
Confidence 233467899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCCCCCCHHHHHHHHHHHHHhhhcccCcCCchh
Q 002104 396 TLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDSNE 434 (966)
Q Consensus 396 TlMIa~ISPs~~~~eETLsTLrFAsRaK~I~l~~~~~~~ 434 (966)
|+||+||||+..+++||++||.||.|||+|+.+|+....
T Consensus 361 T~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQk 399 (1041)
T KOG0243|consen 361 TCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQK 399 (1041)
T ss_pred eEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchH
Confidence 999999999999999999999999999999999887643
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.4e-85 Score=749.30 Aligned_cols=327 Identities=41% Similarity=0.663 Sum_probs=292.8
Q ss_pred CCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeC------CCCCceeecceeeCCCCChHHHHHh-hHHHHHHHhc
Q 002104 100 KGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLA------DNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLD 172 (966)
Q Consensus 100 kGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~------~~k~k~F~FD~VF~p~asQedVF~e-V~PLV~svLd 172 (966)
..+|+||+|+||+...+........+.++.....+... ....+.|+||+||+++++|++||+. +.|+|++||+
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 46899999999999877655544455555444333221 2346789999999999999999998 5999999999
Q ss_pred CCcccEEeeccCCCCcceecccC-CCCCCcHHHHHHHHHHHHHhc--CCeeEEEEEEEEEecceeecccCCCCCCCCCCC
Q 002104 173 GYNACIFAYGQTGTGKSFTMEGT-PDSPGIVPRAIEAIFKQAMES--NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPL 249 (966)
Q Consensus 173 GyNvcIfAYGQTGSGKTyTM~G~-~e~pGIIPRale~LF~~i~e~--~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~ 249 (966)
|||+||||||||||||||||+|+ ++..|||||++++||..+.+. ...|.|+|||+|||||.|+|||.+...
T Consensus 84 GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~------ 157 (574)
T KOG4280|consen 84 GYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNP------ 157 (574)
T ss_pred ccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCc------
Confidence 99999999999999999999999 678899999999999999765 447999999999999999999987653
Q ss_pred CCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecC---CcCccccce
Q 002104 250 PPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDA---PERRREKNK 326 (966)
Q Consensus 250 ~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~---~~~~~~~SK 326 (966)
+.+.|+++++.||||+||+++.|.++++++.+|..|.++|.+++|.||..|||||+||+|+|++... .......|+
T Consensus 158 -~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~r 236 (574)
T KOG4280|consen 158 -KGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSK 236 (574)
T ss_pred -CCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccce
Confidence 4689999999999999999999999999999999999999999999999999999999999998321 234567899
Q ss_pred eEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCC-CCCCCCCccccccccccCCCcceeEEEecCCC
Q 002104 327 IWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKR-HVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPK 405 (966)
Q Consensus 327 L~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~-hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs 405 (966)
|+|||||||||..++++.|+|++||.+||+||++||+||.||+++++ ||||||||||+||||||||||||+||+||+|+
T Consensus 237 lnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~ 316 (574)
T KOG4280|consen 237 LNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPS 316 (574)
T ss_pred eeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCch
Confidence 99999999999999999999999999999999999999999999876 99999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhcccCcCCch
Q 002104 406 EDDLCETICSLNFATRVKSVHLGHEDSN 433 (966)
Q Consensus 406 ~~~~eETLsTLrFAsRaK~I~l~~~~~~ 433 (966)
..+++||++||+||+|||.|++.+....
T Consensus 317 ~~~~~ETlsTLrfA~Rak~I~nk~~ine 344 (574)
T KOG4280|consen 317 SDNYEETLSTLRFAQRAKAIKNKPVINE 344 (574)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccccccC
Confidence 9999999999999999999997765433
No 4
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-82 Score=740.91 Aligned_cols=380 Identities=32% Similarity=0.527 Sum_probs=324.3
Q ss_pred CCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeCCC--CCceeecceeeCCC-------CChHHHHHhh-HHHHHHH
Q 002104 101 GNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADN--KSKNYSFDKVFHPG-------SSQDEVFSEV-EPVIKSV 170 (966)
Q Consensus 101 GnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~~~--k~k~F~FD~VF~p~-------asQedVF~eV-~PLV~sv 170 (966)
.+|+|.|||||++..|....+.+|+...+++..+..+.+ ....|+||+.|+.. ++|..||+++ .++++.+
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~A 83 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHA 83 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHH
Confidence 479999999999999998888899999888776655442 23569999999754 7899999997 8999999
Q ss_pred hcCCcccEEeeccCCCCcceecccCC--CCCCcHHHHHHHHHHHHHh---cCCeeEEEEEEEEEecceeecccCCCCCCC
Q 002104 171 LDGYNACIFAYGQTGTGKSFTMEGTP--DSPGIVPRAIEAIFKQAME---SNHAFRISFSMLEIYLGSLKDLLVTQPTKA 245 (966)
Q Consensus 171 LdGyNvcIfAYGQTGSGKTyTM~G~~--e~pGIIPRale~LF~~i~e---~~~~f~VsVS~lEIYNE~V~DLL~~~~~~~ 245 (966)
++|||+||||||||||||||||+|.. +++|||||++++||.++.. .+..|.|.|||+|||||+|+|||+..+.
T Consensus 84 fEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~-- 161 (1221)
T KOG0245|consen 84 FEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKS-- 161 (1221)
T ss_pred hcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCC--
Confidence 99999999999999999999999987 8999999999999999854 3568999999999999999999984222
Q ss_pred CCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCC--c--Cc
Q 002104 246 TDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP--E--RR 321 (966)
Q Consensus 246 ~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~--~--~~ 321 (966)
.+.|+||++|.-|+||++|+.+.|+|+.|+..+|..|++.|++++|+||+.|||||+||+|.+.+.... . ..
T Consensus 162 ----kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~s 237 (1221)
T KOG0245|consen 162 ----KGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDS 237 (1221)
T ss_pred ----CCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcc
Confidence 346999999999999999999999999999999999999999999999999999999999999875432 2 35
Q ss_pred cccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhC-------CCCCCCCCCccccccccccCCCc
Q 002104 322 REKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRR-------KRHVPYRNSKLTQVLKDSLGEDS 394 (966)
Q Consensus 322 ~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k-------~~hIPYRdSKLTrLLqDSLGGNS 394 (966)
..+|||+|||||||||+..+++.|+||+||.+|||||.+||+||+||+.. ..+||||||.||+||+++|||||
T Consensus 238 ek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNS 317 (1221)
T KOG0245|consen 238 EKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNS 317 (1221)
T ss_pred eeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcc
Confidence 67899999999999999999999999999999999999999999999853 34899999999999999999999
Q ss_pred ceeEEEecCCCCCCHHHHHHHHHHHHHhhhcccCcCCchhhhhHHHHHHHHHHHHHHHHHHHHHH---------------
Q 002104 395 KTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDSNEARDQKEVSMKNLQQKMKKIEEERLR--------------- 459 (966)
Q Consensus 395 KTlMIa~ISPs~~~~eETLsTLrFAsRaK~I~l~~~~~~~~~~~k~~~~~~Lqqkik~LeeE~~~--------------- 459 (966)
||.||++|||+.-||+|||+|||||.|||.|++.+..+. +.....+.+|++++.+|+.-+..
T Consensus 318 KTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNE---dpnaKLIRELreEv~rLksll~~~~~~~~~~~~~p~~~ 394 (1221)
T KOG0245|consen 318 KTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNE---DPNAKLIRELREEVARLKSLLRAQGLGDIAVEGSPSAL 394 (1221)
T ss_pred hhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCC---CccHHHHHHHHHHHHHHHHHHhccccccccccCCcccc
Confidence 999999999999999999999999999999987543322 22233456666666666544321
Q ss_pred -HHHHHHHHHHHHHHHcCChhhHHHHHhhhc
Q 002104 460 -VRGEIENLSEKLEALTRPAHSFQEQLEVSH 489 (966)
Q Consensus 460 -lr~EIe~Lk~~Le~l~~~~~~~qeql~~~~ 489 (966)
.+.+++++.++|.+-++....+++-++.+-
T Consensus 395 ~~~~~~e~~~~~L~E~Ek~mael~etW~EKl 425 (1221)
T KOG0245|consen 395 LSQPEIEELRERLQETEKIMAELNETWEEKL 425 (1221)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134467777777776666666665555443
No 5
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=3.2e-80 Score=680.25 Aligned_cols=316 Identities=40% Similarity=0.636 Sum_probs=289.1
Q ss_pred CEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeCC-------------CCCceeecceeeCCCCChHHHHHh-hHHHH
Q 002104 102 NIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLAD-------------NKSKNYSFDKVFHPGSSQDEVFSE-VEPVI 167 (966)
Q Consensus 102 nIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~~-------------~k~k~F~FD~VF~p~asQedVF~e-V~PLV 167 (966)
||+|||||||+...|.......++.+.+..+++..+. ...+.|.||+||+++++|++||+. ++|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 6999999999998886555556666655554433221 235789999999999999999999 47999
Q ss_pred HHHhcCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHhc--CCeeEEEEEEEEEecceeecccCCCCCCC
Q 002104 168 KSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMES--NHAFRISFSMLEIYLGSLKDLLVTQPTKA 245 (966)
Q Consensus 168 ~svLdGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e~--~~~f~VsVS~lEIYNE~V~DLL~~~~~~~ 245 (966)
+++++|||+||||||||||||||||+|+++++|||||++++||+.+... ...|.|++||+|||||+|+|||++..
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~--- 157 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSS--- 157 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCC---
Confidence 9999999999999999999999999999999999999999999998654 47899999999999999999997642
Q ss_pred CCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCC---cCcc
Q 002104 246 TDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP---ERRR 322 (966)
Q Consensus 246 ~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~---~~~~ 322 (966)
..+.|++++.++++|.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|.+.+.. ....
T Consensus 158 -----~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~ 232 (338)
T cd01370 158 -----GPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQV 232 (338)
T ss_pred -----CCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcE
Confidence 34899999999999999999999999999999999999999999999999999999999999987764 4566
Q ss_pred ccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCC---CCCCCCCCccccccccccCCCcceeEE
Q 002104 323 EKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK---RHVPYRNSKLTQVLKDSLGEDSKTLML 399 (966)
Q Consensus 323 ~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~---~hIPYRdSKLTrLLqDSLGGNSKTlMI 399 (966)
..|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+.++ .|||||+||||+||+|+|||||+|+||
T Consensus 233 ~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I 312 (338)
T cd01370 233 RIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMI 312 (338)
T ss_pred EEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEE
Confidence 78999999999999999999999999999999999999999999999887 899999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhhhc
Q 002104 400 VHVSPKEDDLCETICSLNFATRVKSV 425 (966)
Q Consensus 400 a~ISPs~~~~eETLsTLrFAsRaK~I 425 (966)
+||||+..+++||++||+||+|||+|
T Consensus 313 ~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 313 ANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred EEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999986
No 6
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1e-79 Score=676.08 Aligned_cols=316 Identities=38% Similarity=0.583 Sum_probs=281.2
Q ss_pred CCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeCCCCCceeecceeeCCCCChHHHHHh-hHHHHHHHhcCCcccEE
Q 002104 101 GNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACIF 179 (966)
Q Consensus 101 GnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~~~k~k~F~FD~VF~p~asQedVF~e-V~PLV~svLdGyNvcIf 179 (966)
++|||+|||||+...|.......++...+...++... .+.+.|.||+||+++++|++||+. +.|+|+++++|||+|||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~-~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~ 79 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHS-HPPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIF 79 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeC-CCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEE
Confidence 4899999999999888654444444444433333222 336899999999999999999998 58999999999999999
Q ss_pred eeccCCCCcceecccCCC--------CCCcHHHHHHHHHHHHHhc------CCeeEEEEEEEEEecceeecccCCCCCCC
Q 002104 180 AYGQTGTGKSFTMEGTPD--------SPGIVPRAIEAIFKQAMES------NHAFRISFSMLEIYLGSLKDLLVTQPTKA 245 (966)
Q Consensus 180 AYGQTGSGKTyTM~G~~e--------~pGIIPRale~LF~~i~e~------~~~f~VsVS~lEIYNE~V~DLL~~~~~~~ 245 (966)
|||||||||||||+|+.. ++|||||++++||..+... ...|.|++||+|||||+|+|||.+..
T Consensus 80 aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~--- 156 (337)
T cd01373 80 AYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTS--- 156 (337)
T ss_pred EeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCC---
Confidence 999999999999999753 6899999999999987532 35799999999999999999997543
Q ss_pred CCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCcC--ccc
Q 002104 246 TDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPER--RRE 323 (966)
Q Consensus 246 ~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~~--~~~ 323 (966)
..+.|++++.++++|.|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+|+|...+.... ...
T Consensus 157 -----~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~ 231 (337)
T cd01373 157 -----RNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIR 231 (337)
T ss_pred -----CCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEE
Confidence 2488999999999999999999999999999999999999999999999999999999999987654332 345
Q ss_pred cceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhh----CCCCCCCCCCccccccccccCCCcceeEE
Q 002104 324 KNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR----RKRHVPYRNSKLTQVLKDSLGEDSKTLML 399 (966)
Q Consensus 324 ~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~----k~~hIPYRdSKLTrLLqDSLGGNSKTlMI 399 (966)
.|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+. +..|||||+||||+||||+|||||+|+||
T Consensus 232 ~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I 311 (337)
T cd01373 232 TSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTII 311 (337)
T ss_pred EEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEE
Confidence 79999999999999999999999999999999999999999999975 46899999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhhhc
Q 002104 400 VHVSPKEDDLCETICSLNFATRVKSV 425 (966)
Q Consensus 400 a~ISPs~~~~eETLsTLrFAsRaK~I 425 (966)
+||||+..+++||++||+||+|||.|
T Consensus 312 ~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 312 ANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EEECCCcccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999986
No 7
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2.4e-80 Score=696.69 Aligned_cols=321 Identities=39% Similarity=0.620 Sum_probs=293.9
Q ss_pred CCCCEEEEEEeCCCCCCcCCCCCCcEEEeCC--CceEEEeCCCCCceeecceeeCCCCChHHHHHh-hHHHHHHHhcCCc
Q 002104 99 SKGNIRVFCRIRPISMGENFGRLRPVIAKDS--SNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYN 175 (966)
Q Consensus 99 lkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~--~~v~l~~~~~k~k~F~FD~VF~p~asQedVF~e-V~PLV~svLdGyN 175 (966)
..++|+|+||+||.+..|...+...+..+.+ .++++.... ..+.|.||+||.|+++|++||+. +.|+|++||.|||
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~-~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYN 83 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTK-ETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYN 83 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEeccc-ccccceeeeecCCCccHHHHHHHHHHHHHHHHhcccc
Confidence 4689999999999998886554444444444 334443322 34899999999999999999998 6999999999999
Q ss_pred ccEEeeccCCCCcceecccCCC---CCCcHHHHHHHHHHHHHhc--CCeeEEEEEEEEEecceeecccCCCCCCCCCCCC
Q 002104 176 ACIFAYGQTGTGKSFTMEGTPD---SPGIVPRAIEAIFKQAMES--NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLP 250 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM~G~~e---~pGIIPRale~LF~~i~e~--~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~ 250 (966)
+||||||||||||||||.|... ..||+||++++||.++... +..|+|+|||+|||+|+|+|||++...
T Consensus 84 GTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~------- 156 (607)
T KOG0240|consen 84 GTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKT------- 156 (607)
T ss_pred eeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccC-------
Confidence 9999999999999999999765 5699999999999999654 458999999999999999999986543
Q ss_pred CcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCcCccccceeEEE
Q 002104 251 PCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLV 330 (966)
Q Consensus 251 ~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~~~~~~SKL~LV 330 (966)
.+.|++|...+++|+|+++..|.++++++++++.|..+|+++.|+||.+|||||+||+|+|.+.+........|+|+||
T Consensus 157 -nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLV 235 (607)
T KOG0240|consen 157 -NLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLV 235 (607)
T ss_pred -CceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEE
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhC-CCCCCCCCCccccccccccCCCcceeEEEecCCCCCCH
Q 002104 331 DLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRR-KRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDL 409 (966)
Q Consensus 331 DLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k-~~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~ 409 (966)
||||||++.++++.|.-+.|+++||+||+|||+||+||+.+ +.|||||||||||||||||||||+|.+|+|++|+..+.
T Consensus 236 DLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~ 315 (607)
T KOG0240|consen 236 DLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNE 315 (607)
T ss_pred EcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccc
Confidence 99999999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccC
Q 002104 410 CETICSLNFATRVKSVHLG 428 (966)
Q Consensus 410 eETLsTLrFAsRaK~I~l~ 428 (966)
.||.+||+|+.||+.|+..
T Consensus 316 ~ET~STl~fg~rak~ikN~ 334 (607)
T KOG0240|consen 316 AETKSTLRFGNRAKTIKNT 334 (607)
T ss_pred cccccchhhccccccccch
Confidence 9999999999999999853
No 8
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=5.3e-79 Score=729.79 Aligned_cols=356 Identities=33% Similarity=0.537 Sum_probs=299.2
Q ss_pred HHhhhhhhccC----CCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeCCCCCceeecceeeCCCCChHHHHHhh-
Q 002104 89 RRQILNEFLDS----KGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSEV- 163 (966)
Q Consensus 89 Rk~L~N~l~el----kGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~~~k~k~F~FD~VF~p~asQedVF~eV- 163 (966)
+|+|..+.... .++|+|||||||++..|.. ...++..+++.+.+ ..+.|.||+||+++++|++||+.+
T Consensus 82 ~rk~~~~~~~en~~~ds~VkV~VRVRPl~~~E~g--~~iV~~~s~dsl~I-----~~qtFtFD~VFdp~aTQedVFe~vv 154 (1320)
T PLN03188 82 KRKLSAETAPENGVSDSGVKVIVRMKPLNKGEEG--EMIVQKMSNDSLTI-----NGQTFTFDSIADPESTQEDIFQLVG 154 (1320)
T ss_pred hccccccccccccCCCCCeEEEEEcCCCCCccCC--CeeEEEcCCCeEEE-----eCcEEeCCeeeCCCCCHHHHHHHHH
Confidence 34555444333 6799999999999987642 22333444444433 247899999999999999999995
Q ss_pred HHHHHHHhcCCcccEEeeccCCCCcceecccCC----------CCCCcHHHHHHHHHHHHHh-------cCCeeEEEEEE
Q 002104 164 EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTP----------DSPGIVPRAIEAIFKQAME-------SNHAFRISFSM 226 (966)
Q Consensus 164 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~----------e~pGIIPRale~LF~~i~e-------~~~~f~VsVS~ 226 (966)
.|+|+++++|||+||||||||||||||||+|+. .++|||||++++||..+.. ....|.|+|||
T Consensus 155 ~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSy 234 (1320)
T PLN03188 155 APLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSF 234 (1320)
T ss_pred HHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEE
Confidence 899999999999999999999999999999963 5689999999999998753 23579999999
Q ss_pred EEEecceeecccCCCCCCCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCcee
Q 002104 227 LEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHC 306 (966)
Q Consensus 227 lEIYNE~V~DLL~~~~~~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~ 306 (966)
+|||||+|+|||.+.. ..+.|++++.++++|.||+++.|.|+++++++|..|..+|++++|.+|..|||||+
T Consensus 235 LEIYNEkI~DLLsp~~--------k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHa 306 (1320)
T PLN03188 235 LEIYNEQITDLLDPSQ--------KNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHS 306 (1320)
T ss_pred EeeecCcceecccccc--------CCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCce
Confidence 9999999999997643 24889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEecCC----cCccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhh-----CCCCCCC
Q 002104 307 MIRISITCFDAP----ERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR-----RKRHVPY 377 (966)
Q Consensus 307 IftI~I~~~n~~----~~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~-----k~~hIPY 377 (966)
||+|+|...... ......|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+. +..||||
T Consensus 307 IFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPY 386 (1320)
T PLN03188 307 VFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPY 386 (1320)
T ss_pred eEEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCC
Confidence 999999864321 2234579999999999999999999999999999999999999999999975 4579999
Q ss_pred CCCccccccccccCCCcceeEEEecCCCCCCHHHHHHHHHHHHHhhhcccCcCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 002104 378 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDSNEARDQKEVSMKNLQQKMKKIEEER 457 (966)
Q Consensus 378 RdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~eETLsTLrFAsRaK~I~l~~~~~~~~~~~k~~~~~~Lqqkik~LeeE~ 457 (966)
|+||||+||||+|||||+|+|||||||+..+++||++||+||+||+.|++.+.......+ ....|++.+++|++|+
T Consensus 387 RDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~----~vn~LrelIr~Lk~EL 462 (1320)
T PLN03188 387 RDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQD----DVNFLREVIRQLRDEL 462 (1320)
T ss_pred CcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhh----hHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987644332211 1234555555666555
Q ss_pred HHHHHH
Q 002104 458 LRVRGE 463 (966)
Q Consensus 458 ~~lr~E 463 (966)
.+++..
T Consensus 463 ~rLK~~ 468 (1320)
T PLN03188 463 QRVKAN 468 (1320)
T ss_pred HHHHHh
Confidence 555543
No 9
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.1e-79 Score=717.46 Aligned_cols=351 Identities=36% Similarity=0.595 Sum_probs=300.5
Q ss_pred CCCEEEEEEeCCCCCCcCCCC-CCcEEEeCCCceEEEeCCC-----CCceeecceeeCCCCChHHHHHh-hHHHHHHHhc
Q 002104 100 KGNIRVFCRIRPISMGENFGR-LRPVIAKDSSNVLLKLADN-----KSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLD 172 (966)
Q Consensus 100 kGnIRV~~RVRPl~~~E~~~~-~~~vv~~d~~~v~l~~~~~-----k~k~F~FD~VF~p~asQedVF~e-V~PLV~svLd 172 (966)
..+|.|+|||||+.+.+.... ...+...++..+....... ....|.||+||+++++|++||+. ++|+|.+|+.
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~ 84 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLE 84 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhc
Confidence 358999999999998754322 2234444444443332111 14789999999999999999998 8999999999
Q ss_pred CCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHh-cCCeeEEEEEEEEEecceeecccCCCCCCCCCCCCC
Q 002104 173 GYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME-SNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPP 251 (966)
Q Consensus 173 GyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e-~~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~ 251 (966)
|||++|||||||||||||||.|..++|||||+|+.+||+.+.+ ....|.|.|||+|||||.|+|||.+...
T Consensus 85 G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~-------- 156 (675)
T KOG0242|consen 85 GFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGG-------- 156 (675)
T ss_pred CcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCC--------
Confidence 9999999999999999999999999999999999999999865 3678999999999999999999977543
Q ss_pred cceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCcCccccceeEEEe
Q 002104 252 CLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVD 331 (966)
Q Consensus 252 ~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~~~~~~SKL~LVD 331 (966)
.+.|++|+.+|++|.||+++.|.|+++++.+|..|..+|+++.|++|..|||||+||+|+|.+....... ..++|+|||
T Consensus 157 ~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~~s~L~lID 235 (675)
T KOG0242|consen 157 DLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-RVSKLNLID 235 (675)
T ss_pred CceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-hhheehhhh
Confidence 3899999999999999999999999999999999999999999999999999999999999987654332 678999999
Q ss_pred ccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhC--CCCCCCCCCccccccccccCCCcceeEEEecCCCCCCH
Q 002104 332 LGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRR--KRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDL 409 (966)
Q Consensus 332 LAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k--~~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~ 409 (966)
||||||+.++++.|.|++||.+||+||++||+||.+|+.+ ..||||||||||||||++|||||+|+|||||+|+..++
T Consensus 236 LAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~ 315 (675)
T KOG0242|consen 236 LAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHY 315 (675)
T ss_pred hhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHH
Confidence 9999999999999999999999999999999999999876 56999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002104 410 CETICSLNFATRVKSVHLGHEDSNEARDQKEVSMKNLQQKMKKIEEERLRVR 461 (966)
Q Consensus 410 eETLsTLrFAsRaK~I~l~~~~~~~~~~~k~~~~~~Lqqkik~LeeE~~~lr 461 (966)
+||.+||+||+|||+|++.........+... ...++.++.+|+.++.+++
T Consensus 316 ~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~--~~~~~~~i~~l~~e~~~~~ 365 (675)
T KOG0242|consen 316 EETKNTLKFASRAKEITTKAQVNVILSDKAL--LKYLQREIAELEAELERLK 365 (675)
T ss_pred HHHHHHHHHHHHhhhcccccccceecchhhh--hHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999976544332222221 2233555555555555433
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=5.3e-78 Score=664.58 Aligned_cols=316 Identities=32% Similarity=0.559 Sum_probs=282.8
Q ss_pred CEEEEEEeCCCCCCcCCCCCCcEEE-eCCCceEEEeCC------------CCCceeecceeeCCCCChHHHHHh-hHHHH
Q 002104 102 NIRVFCRIRPISMGENFGRLRPVIA-KDSSNVLLKLAD------------NKSKNYSFDKVFHPGSSQDEVFSE-VEPVI 167 (966)
Q Consensus 102 nIRV~~RVRPl~~~E~~~~~~~vv~-~d~~~v~l~~~~------------~k~k~F~FD~VF~p~asQedVF~e-V~PLV 167 (966)
+|+|||||||+...|......+++. .++..+.+..+. ...+.|.||+||+++++|++||+. +.|+|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v 81 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLV 81 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHH
Confidence 6999999999998876544444444 444444443322 246789999999999999999998 58999
Q ss_pred HHHhcCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEecceeecccCCCCCCCCC
Q 002104 168 KSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATD 247 (966)
Q Consensus 168 ~svLdGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e~~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~ 247 (966)
+++++|||+||||||||||||||||+|++.++|||||++++||+.+.. |.|++||+|||||+|+|||++.....
T Consensus 82 ~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~----~~v~~S~~EIyne~v~DLL~~~~~~~-- 155 (345)
T cd01368 82 QDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG----YSVFVSYVEIYNNYIYDLLEDSPSST-- 155 (345)
T ss_pred HHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh----eeEEEEEEEEeCCEeEeCCCCccccc--
Confidence 999999999999999999999999999999999999999999998866 99999999999999999998765421
Q ss_pred CCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCc--------
Q 002104 248 PLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPE-------- 319 (966)
Q Consensus 248 ~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~-------- 319 (966)
.....+.|++++.++++|.|++++.|.|++|++++|..|.++|.+++|.+|.+|||||+||+|+|.+.+...
T Consensus 156 ~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~ 235 (345)
T cd01368 156 KKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDK 235 (345)
T ss_pred cCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCC
Confidence 123458999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred CccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhh------CCCCCCCCCCccccccccccCCC
Q 002104 320 RRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR------RKRHVPYRNSKLTQVLKDSLGED 393 (966)
Q Consensus 320 ~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~------k~~hIPYRdSKLTrLLqDSLGGN 393 (966)
.....|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+. +..|||||+||||+||+|+||||
T Consensus 236 ~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~ 315 (345)
T cd01368 236 DQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGE 315 (345)
T ss_pred CceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCC
Confidence 345679999999999999999999999999999999999999999999986 57899999999999999999999
Q ss_pred cceeEEEecCCCCCCHHHHHHHHHHHHHhh
Q 002104 394 SKTLMLVHVSPKEDDLCETICSLNFATRVK 423 (966)
Q Consensus 394 SKTlMIa~ISPs~~~~eETLsTLrFAsRaK 423 (966)
|+|+||+||||+..+++||++||+||.+|+
T Consensus 316 s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 316 GKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.1e-76 Score=655.54 Aligned_cols=325 Identities=37% Similarity=0.569 Sum_probs=296.1
Q ss_pred CCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeCC------CCCceeecceeeCCC-------CChHHHHHh-hHHH
Q 002104 101 GNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLAD------NKSKNYSFDKVFHPG-------SSQDEVFSE-VEPV 166 (966)
Q Consensus 101 GnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~~------~k~k~F~FD~VF~p~-------asQedVF~e-V~PL 166 (966)
+||+|||||||++..|...+...++.+++..+.+.... ...+.|.||+||++. ++|++||+. +.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 68999999999998887666666778888777665543 346789999999999 999999998 5899
Q ss_pred HHHHhcCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHhc---CCeeEEEEEEEEEecceeecccCCCCC
Q 002104 167 IKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMES---NHAFRISFSMLEIYLGSLKDLLVTQPT 243 (966)
Q Consensus 167 V~svLdGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e~---~~~f~VsVS~lEIYNE~V~DLL~~~~~ 243 (966)
|+++++|||+||||||||||||||||+|+..++|||||++++||+.+... ...|.|++||+|||||+|+|||++...
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 160 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKK 160 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCcc
Confidence 99999999999999999999999999999999999999999999988654 357999999999999999999987641
Q ss_pred CCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCC----c
Q 002104 244 KATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP----E 319 (966)
Q Consensus 244 ~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~----~ 319 (966)
....+.|++++.++++|+|++++.|.|++|++++|..|.++|.+++|.+|..|||||+||+|+|.+.+.. .
T Consensus 161 -----~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~ 235 (356)
T cd01365 161 -----NKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDL 235 (356)
T ss_pred -----CCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCC
Confidence 1245899999999999999999999999999999999999999999999999999999999999876543 3
Q ss_pred CccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhC--------CCCCCCCCCccccccccccC
Q 002104 320 RRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRR--------KRHVPYRNSKLTQVLKDSLG 391 (966)
Q Consensus 320 ~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k--------~~hIPYRdSKLTrLLqDSLG 391 (966)
.....|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|+.+ ..|||||+||||+||+|+||
T Consensus 236 ~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lg 315 (356)
T cd01365 236 TTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLG 315 (356)
T ss_pred CceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcC
Confidence 4567899999999999999999999999999999999999999999999863 58999999999999999999
Q ss_pred CCcceeEEEecCCCCCCHHHHHHHHHHHHHhhhcccCcC
Q 002104 392 EDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHE 430 (966)
Q Consensus 392 GNSKTlMIa~ISPs~~~~eETLsTLrFAsRaK~I~l~~~ 430 (966)
|||+|+||+||||...+++||++||+||+|+++|++.|.
T Consensus 316 g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~ 354 (356)
T cd01365 316 GNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAV 354 (356)
T ss_pred CCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccc
Confidence 999999999999999999999999999999999997663
No 12
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=8.9e-77 Score=648.81 Aligned_cols=311 Identities=36% Similarity=0.523 Sum_probs=284.2
Q ss_pred CCEEEEEEeCCCCCCcCCCCCCcEEEeCCC-ceEEEeCC--------CCCceeecceeeCCCCChHHHHHh-hHHHHHHH
Q 002104 101 GNIRVFCRIRPISMGENFGRLRPVIAKDSS-NVLLKLAD--------NKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSV 170 (966)
Q Consensus 101 GnIRV~~RVRPl~~~E~~~~~~~vv~~d~~-~v~l~~~~--------~k~k~F~FD~VF~p~asQedVF~e-V~PLV~sv 170 (966)
++|+|||||||+.+.|...+...++.++++ .+.+.... ...+.|.||+||+++++|++||+. +.|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 489999999999998865555556666665 34333211 125789999999999999999998 69999999
Q ss_pred hcCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEecceeecccCCCCCCCCCCCC
Q 002104 171 LDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLP 250 (966)
Q Consensus 171 LdGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e~~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~ 250 (966)
++|||+||||||||||||||||+|+.+++||+||++++||+.+......|.|++||+|||||+|+|||++.
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~--------- 151 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPNDDLGVTVSFFEIYGGKLFDLLNDR--------- 151 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccccccEEEEEEEeeecCchhhhccCc---------
Confidence 99999999999999999999999999999999999999999998777889999999999999999999762
Q ss_pred CcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCcCccccceeEEE
Q 002104 251 PCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLV 330 (966)
Q Consensus 251 ~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~~~~~~SKL~LV 330 (966)
+.+.|++++.++++|.|++++.|.|++|++++|..|..+|.+++|.+|..|||||+||+|+|...+. ....|+|+||
T Consensus 152 ~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~v 228 (322)
T cd01367 152 KRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSFI 228 (322)
T ss_pred cceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEEe
Confidence 2488999999999999999999999999999999999999999999999999999999999998765 4568999999
Q ss_pred eccCCccccccc-ccchhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcceeEEEecCCCCCCH
Q 002104 331 DLGGSERVLKTK-ARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDL 409 (966)
Q Consensus 331 DLAGSER~~kt~-a~G~rlkEa~~INkSLsALG~VI~ALs~k~~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~ 409 (966)
|||||||...++ ..+++++|+.+||+||++|++||.+|+.++.||||||||||+||+|+|||||+|+||+||||+..++
T Consensus 229 DLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~ 308 (322)
T cd01367 229 DLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSC 308 (322)
T ss_pred ecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhH
Confidence 999999998765 5689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 002104 410 CETICSLNFATRVK 423 (966)
Q Consensus 410 eETLsTLrFAsRaK 423 (966)
+||++||+||+|+|
T Consensus 309 ~eTl~tL~fa~r~k 322 (322)
T cd01367 309 EHTLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999999986
No 13
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1.5e-75 Score=638.21 Aligned_cols=311 Identities=35% Similarity=0.552 Sum_probs=282.4
Q ss_pred CEEEEEEeCCCCCCcCCCCCCcEEEeCCC-----ceEEEeC--CCCCceeecceeeCCCCChHHHHHh-hHHHHHHHhcC
Q 002104 102 NIRVFCRIRPISMGENFGRLRPVIAKDSS-----NVLLKLA--DNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDG 173 (966)
Q Consensus 102 nIRV~~RVRPl~~~E~~~~~~~vv~~d~~-----~v~l~~~--~~k~k~F~FD~VF~p~asQedVF~e-V~PLV~svLdG 173 (966)
||+|||||||+...|... ..++...+.. .+.+..+ ....+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~i~V~vRvRP~~~~e~~~-~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G 79 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDS-SSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSG 79 (319)
T ss_pred CcEEEEEeCcCCccccCC-CceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCC
Confidence 799999999998887432 2233333331 3333322 2346889999999999999999998 79999999999
Q ss_pred CcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcc
Q 002104 174 YNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCL 253 (966)
Q Consensus 174 yNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e~~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~~L 253 (966)
||+||||||||||||||||+|+..++|||||++++||+.+......|.|++||+|||||.|+|||.+.. ..+
T Consensus 80 ~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~--------~~l 151 (319)
T cd01376 80 QNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLEPAK--------KEL 151 (319)
T ss_pred CceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhccccceEEEEEEEEECCEeeEccCCCC--------CCc
Confidence 999999999999999999999999999999999999999887778999999999999999999997642 247
Q ss_pred eeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCcCccccceeEEEecc
Q 002104 254 SIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVDLG 333 (966)
Q Consensus 254 ~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~~~~~~SKL~LVDLA 333 (966)
.|++++.++++|.|++++.|.+++|+++++..|.++|.+++|.+|..|||||+||+|+|.+.+.. ....|+|+|||||
T Consensus 152 ~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~--~~~~s~l~~VDLA 229 (319)
T cd01376 152 PIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN--IQLEGKLNLIDLA 229 (319)
T ss_pred eEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC--ceEEEEEEEEECC
Confidence 89999999999999999999999999999999999999999999999999999999999887542 3578999999999
Q ss_pred CCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcceeEEEecCCCCCCHHHHH
Q 002104 334 GSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETI 413 (966)
Q Consensus 334 GSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~eETL 413 (966)
||||..+++..|.+++|+.+||+||++|++||.+|+.+..|||||+||||+||+|+|||||+|+||+||||...+++||+
T Consensus 230 GsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl 309 (319)
T cd01376 230 GSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTL 309 (319)
T ss_pred CCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 002104 414 CSLNFATRVK 423 (966)
Q Consensus 414 sTLrFAsRaK 423 (966)
+||+||+|+|
T Consensus 310 ~TL~fa~r~~ 319 (319)
T cd01376 310 STLNFASRSK 319 (319)
T ss_pred HHHHHHHhhC
Confidence 9999999986
No 14
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=2.4e-75 Score=643.46 Aligned_cols=325 Identities=41% Similarity=0.613 Sum_probs=292.8
Q ss_pred CCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeCC-----CCCceeecceeeCCCCChHHHHHh-hHHHHHHHhcCC
Q 002104 101 GNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLAD-----NKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGY 174 (966)
Q Consensus 101 GnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~~-----~k~k~F~FD~VF~p~asQedVF~e-V~PLV~svLdGy 174 (966)
+||+|+|||||+...|.......++..++....+.... ...+.|.||+||+++++|++||+. +.|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGY 81 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 69999999999999886655556666665432222222 256889999999999999999998 699999999999
Q ss_pred cccEEeeccCCCCcceecccCC-----------CCCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEecceeecccCCCCC
Q 002104 175 NACIFAYGQTGTGKSFTMEGTP-----------DSPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPT 243 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM~G~~-----------e~pGIIPRale~LF~~i~e~~~~f~VsVS~lEIYNE~V~DLL~~~~~ 243 (966)
|+||||||||||||||||+|+. +.+|||||++++||+.+......|.|++||+|||||+|+|||++...
T Consensus 82 n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 161 (352)
T cd01364 82 NCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQNTEYSVKVSYLELYNEELFDLLSSESD 161 (352)
T ss_pred eEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhccceeEEEEEEEEeeCCeeeeCCCCccc
Confidence 9999999999999999999974 34899999999999999887889999999999999999999986541
Q ss_pred CCCCCCCCcceeeec--CCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCC---
Q 002104 244 KATDPLPPCLSIHTE--PKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP--- 318 (966)
Q Consensus 244 ~~~~~~~~~L~Ired--~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~--- 318 (966)
..+.+.++++ ..++++|.|++++.|.|++|++++|..|.++|.+++|.+|..|||||+||+|+|.+.+..
T Consensus 162 -----~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~ 236 (352)
T cd01364 162 -----LNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISG 236 (352)
T ss_pred -----cCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCC
Confidence 1345889999 689999999999999999999999999999999999999999999999999999876543
Q ss_pred cCccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcceeE
Q 002104 319 ERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLM 398 (966)
Q Consensus 319 ~~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~hIPYRdSKLTrLLqDSLGGNSKTlM 398 (966)
......|+|+|||||||||..+.++.+.+++|+..||+||++|++||.+|+.++.|||||+||||+||+|+|||||+|+|
T Consensus 237 ~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~ 316 (352)
T cd01364 237 EELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSI 316 (352)
T ss_pred CccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEE
Confidence 23345799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHhhhcccCcC
Q 002104 399 LVHVSPKEDDLCETICSLNFATRVKSVHLGHE 430 (966)
Q Consensus 399 Ia~ISPs~~~~eETLsTLrFAsRaK~I~l~~~ 430 (966)
|+||||+..+++||++||+||+|+++|++.|.
T Consensus 317 I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~ 348 (352)
T cd01364 317 IATISPASINLEETLSTLEYAHRAKNIKNKPE 348 (352)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHhhccCccc
Confidence 99999999999999999999999999998774
No 15
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=2.5e-75 Score=636.55 Aligned_cols=317 Identities=39% Similarity=0.679 Sum_probs=291.3
Q ss_pred CCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeCCCCCceeecceeeCCCCChHHHHHh-hHHHHHHHhcCCcccEE
Q 002104 101 GNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACIF 179 (966)
Q Consensus 101 GnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~~~k~k~F~FD~VF~p~asQedVF~e-V~PLV~svLdGyNvcIf 179 (966)
.+|+|+|||||+...|.......++...+...+........+.|.||+||+++++|++||+. ++|+|+++++|||+|||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ 81 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIF 81 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEE
Confidence 48999999999998885545555666666644433344567899999999999999999998 59999999999999999
Q ss_pred eeccCCCCcceecccCCC---CCCcHHHHHHHHHHHHHhc--CCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcce
Q 002104 180 AYGQTGTGKSFTMEGTPD---SPGIVPRAIEAIFKQAMES--NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLS 254 (966)
Q Consensus 180 AYGQTGSGKTyTM~G~~e---~pGIIPRale~LF~~i~e~--~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~~L~ 254 (966)
|||||||||||||+|+.. ++||+||++++||+.+... ...|.|++||+|||||.++|||++.. ..+.
T Consensus 82 ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~--------~~l~ 153 (325)
T cd01369 82 AYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSK--------DNLQ 153 (325)
T ss_pred EeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCcc--------CCce
Confidence 999999999999999987 8999999999999998654 45799999999999999999997652 2478
Q ss_pred eeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCcCccccceeEEEeccC
Q 002104 255 IHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVDLGG 334 (966)
Q Consensus 255 Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~~~~~~SKL~LVDLAG 334 (966)
+++++.++++|+|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.+........|+|+||||||
T Consensus 154 i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAG 233 (325)
T cd01369 154 VHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAG 233 (325)
T ss_pred EEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999888777777899999999999
Q ss_pred CcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCC-CCCCCCCCccccccccccCCCcceeEEEecCCCCCCHHHHH
Q 002104 335 SERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK-RHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETI 413 (966)
Q Consensus 335 SER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~-~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~eETL 413 (966)
|||..++++.|.+++|+..||+||++|++||.+|+.++ .|||||+||||+||+|+|||+|+|+||+||||+..+++||+
T Consensus 234 sE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl 313 (325)
T cd01369 234 SEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETL 313 (325)
T ss_pred CCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHH
Confidence 99999999999999999999999999999999999987 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 002104 414 CSLNFATRVKSV 425 (966)
Q Consensus 414 sTLrFAsRaK~I 425 (966)
+||+||+|+|+|
T Consensus 314 ~TL~~a~r~~~i 325 (325)
T cd01369 314 STLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHhhcC
Confidence 999999999986
No 16
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=5.3e-75 Score=634.55 Aligned_cols=323 Identities=51% Similarity=0.815 Sum_probs=295.6
Q ss_pred CCCEEEEEEeCCCCCCcCCCCCCcEEEeCCC--ceEEEeCC-CCCceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcc
Q 002104 100 KGNIRVFCRIRPISMGENFGRLRPVIAKDSS--NVLLKLAD-NKSKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNA 176 (966)
Q Consensus 100 kGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~--~v~l~~~~-~k~k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNv 176 (966)
+|+|+|+|||||+...|.. ....++.+++. ..+..... ...+.|.||+||+++++|++||+.++|+|+++++|+|+
T Consensus 1 ~~~i~V~vRirP~~~~e~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G~~~ 79 (329)
T cd01366 1 KGNIRVFCRVRPLLPSEST-EYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDGYNV 79 (329)
T ss_pred CCCEEEEEEcCcCCccccC-CCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCCCce
Confidence 6999999999999988762 33345555555 33322232 56789999999999999999999999999999999999
Q ss_pred cEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHhc---CCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcc
Q 002104 177 CIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMES---NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCL 253 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e~---~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~~L 253 (966)
||||||+|||||||||+|+.+++||+||++++||..+... +..|.|++||+|||||+++|||++.+. ..+.+
T Consensus 80 ~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~-----~~~~l 154 (329)
T cd01366 80 CIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPA-----PKKKL 154 (329)
T ss_pred EEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcC-----CCCce
Confidence 9999999999999999999999999999999999988654 568999999999999999999987541 13458
Q ss_pred eeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCcCccccceeEEEecc
Q 002104 254 SIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVDLG 333 (966)
Q Consensus 254 ~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~~~~~~SKL~LVDLA 333 (966)
+|++++.++++|.|++++.|.|++|+.+++..|.++|.+++|.+|..|||||+||+|+|.+.+...+....|+|+|||||
T Consensus 155 ~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDLa 234 (329)
T cd01366 155 EIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLA 234 (329)
T ss_pred EEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999998877777889999999999
Q ss_pred CCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcceeEEEecCCCCCCHHHHH
Q 002104 334 GSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETI 413 (966)
Q Consensus 334 GSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~eETL 413 (966)
|||+..+.++.+.+++|+..||+||++|++||.+|+.+..|||||+||||+||+|+|||+++|+||+||||...+++||+
T Consensus 235 GsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl 314 (329)
T cd01366 235 GSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETL 314 (329)
T ss_pred CCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccC
Q 002104 414 CSLNFATRVKSVHLG 428 (966)
Q Consensus 414 sTLrFAsRaK~I~l~ 428 (966)
+||+||+|+++|++|
T Consensus 315 ~tL~~a~~~~~i~~~ 329 (329)
T cd01366 315 CSLRFASRVRSVELG 329 (329)
T ss_pred HHHHHHHHhhcccCC
Confidence 999999999999864
No 17
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=4.5e-75 Score=637.67 Aligned_cols=318 Identities=41% Similarity=0.659 Sum_probs=287.2
Q ss_pred CCEEEEEEeCCCCCCcCCCCCCcEEEeCCCce--EEEeCC----CCCceeecceeeCCCCChHHHHHh-hHHHHHHHhcC
Q 002104 101 GNIRVFCRIRPISMGENFGRLRPVIAKDSSNV--LLKLAD----NKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDG 173 (966)
Q Consensus 101 GnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v--~l~~~~----~k~k~F~FD~VF~p~asQedVF~e-V~PLV~svLdG 173 (966)
.||+|+|||||++..|.......++..+.... .+.... ...+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 38999999999998886655555666654443 332222 346789999999999999999998 69999999999
Q ss_pred CcccEEeeccCCCCcceecccCCC---CCCcHHHHHHHHHHHHHhc-CCeeEEEEEEEEEecceeecccCCCCCCCCCCC
Q 002104 174 YNACIFAYGQTGTGKSFTMEGTPD---SPGIVPRAIEAIFKQAMES-NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPL 249 (966)
Q Consensus 174 yNvcIfAYGQTGSGKTyTM~G~~e---~pGIIPRale~LF~~i~e~-~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~ 249 (966)
||+||||||||||||||||+|+.. ++|||||++++||+.+... ...|.|++||+|||||+|+|||.+...
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~------ 154 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQK------ 154 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCC------
Confidence 999999999999999999999887 8999999999999988654 468999999999999999999976432
Q ss_pred CCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCC---cCccccce
Q 002104 250 PPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP---ERRREKNK 326 (966)
Q Consensus 250 ~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~---~~~~~~SK 326 (966)
..+.+++++.++++|.|++++.|.|++++..+|..|.++|.+++|.+|..|||||+||+|+|++.+.. ......|+
T Consensus 155 -~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~ 233 (333)
T cd01371 155 -KKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGK 233 (333)
T ss_pred -CceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEE
Confidence 34889999999999999999999999999999999999999999999999999999999999987653 34556799
Q ss_pred eEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCC-CCCCCCCccccccccccCCCcceeEEEecCCC
Q 002104 327 IWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKR-HVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPK 405 (966)
Q Consensus 327 L~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~-hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs 405 (966)
|+|||||||||..+++..|.+++|+..||+||.+|++||.+|+.++. |||||+||||+||+|+|||||+|+||+||+|.
T Consensus 234 L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~ 313 (333)
T cd01371 234 LNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPA 313 (333)
T ss_pred EEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999875 99999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhc
Q 002104 406 EDDLCETICSLNFATRVKSV 425 (966)
Q Consensus 406 ~~~~eETLsTLrFAsRaK~I 425 (966)
..+++||++||+||+|+|.|
T Consensus 314 ~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 314 DYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred cccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999986
No 18
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=6.9e-75 Score=632.59 Aligned_cols=314 Identities=37% Similarity=0.601 Sum_probs=287.7
Q ss_pred CEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeCCCCCceeecceeeCCCCChHHHHHh-hHHHHHHHhcCCcccEEe
Q 002104 102 NIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACIFA 180 (966)
Q Consensus 102 nIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~~~k~k~F~FD~VF~p~asQedVF~e-V~PLV~svLdGyNvcIfA 180 (966)
||+|+|||||+...|... ..+++.++++..++.......+.|.||+||+++++|++||+. +.|+|+++++|||+||||
T Consensus 1 ~V~V~vRvRP~~~~e~~~-~~~~~~~~~~~~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~a 79 (321)
T cd01374 1 KIKVSVRVRPLNPRESDN-EQVAWSIDNDNTISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFA 79 (321)
T ss_pred CeEEEEEcCcCCcccccC-CcceEEECCCCEEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEe
Confidence 799999999999887643 345666666644444444567899999999999999999998 699999999999999999
Q ss_pred eccCCCCcceecccCCCCCCcHHHHHHHHHHHHHh-cCCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcceeeecC
Q 002104 181 YGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME-SNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP 259 (966)
Q Consensus 181 YGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e-~~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~~L~Ired~ 259 (966)
||||||||||||+|+.+++||+||++++||..+.+ ....|.|++||+|||||+|+|||.+.. ..+++++++
T Consensus 80 yG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~--------~~l~i~~~~ 151 (321)
T cd01374 80 YGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSP--------QELRIREDP 151 (321)
T ss_pred ecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCC--------CCceEEECC
Confidence 99999999999999999999999999999998865 356899999999999999999997654 248899999
Q ss_pred CCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCc---CccccceeEEEeccCCc
Q 002104 260 KGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPE---RRREKNKIWLVDLGGSE 336 (966)
Q Consensus 260 ~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~---~~~~~SKL~LVDLAGSE 336 (966)
.++++|.|++++.|.|++|++++|..|.++|++++|.+|.+|||||+||+|+|...+... +....|+|+||||||||
T Consensus 152 ~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE 231 (321)
T cd01374 152 NKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSE 231 (321)
T ss_pred CCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999999999876544 55678999999999999
Q ss_pred ccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCC--CCCCCCCCccccccccccCCCcceeEEEecCCCCCCHHHHHH
Q 002104 337 RVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK--RHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETIC 414 (966)
Q Consensus 337 R~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~--~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~eETLs 414 (966)
|..+.+ .+.+++|+.+||+||++|++||.+|+.++ .|||||+||||+||+|+|||||+|+||+||||...+++||++
T Consensus 232 ~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~ 310 (321)
T cd01374 232 RASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLN 310 (321)
T ss_pred ccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHH
Confidence 999988 89999999999999999999999999985 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhc
Q 002104 415 SLNFATRVKSV 425 (966)
Q Consensus 415 TLrFAsRaK~I 425 (966)
||+||+|+++|
T Consensus 311 TL~~a~r~~~i 321 (321)
T cd01374 311 TLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHhcC
Confidence 99999999976
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.4e-74 Score=632.12 Aligned_cols=318 Identities=39% Similarity=0.625 Sum_probs=285.6
Q ss_pred CEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeCCCCCceeecceeeCCCCChHHHHHh-hHHHHHHHhcCCcccEEe
Q 002104 102 NIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACIFA 180 (966)
Q Consensus 102 nIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~~~k~k~F~FD~VF~p~asQedVF~e-V~PLV~svLdGyNvcIfA 180 (966)
+|+|+||+||+...|.......++.+.+.+..+... ..+.|.||+||+++++|++||+. ++|+|+++++|||+||||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~--~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~a 79 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVG--TDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLA 79 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEec--CCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceee
Confidence 699999999999888655444455444443222222 26789999999999999999998 689999999999999999
Q ss_pred eccCCCCcceecccCC------CCCCcHHHHHHHHHHHHHhcC--CeeEEEEEEEEEecceeecccCCCCCCCCCCCCCc
Q 002104 181 YGQTGTGKSFTMEGTP------DSPGIVPRAIEAIFKQAMESN--HAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPC 252 (966)
Q Consensus 181 YGQTGSGKTyTM~G~~------e~pGIIPRale~LF~~i~e~~--~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~~ 252 (966)
||||||||||||+|+. +++|||||++++||+.+.... ..|.|.|||+|||||+|+|||.+... ..+.
T Consensus 80 yG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~-----~~~~ 154 (341)
T cd01372 80 YGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTS-----EKSP 154 (341)
T ss_pred ecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCccc-----CCCC
Confidence 9999999999999974 579999999999999987654 58999999999999999999976541 1245
Q ss_pred ceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCC----------cCcc
Q 002104 253 LSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP----------ERRR 322 (966)
Q Consensus 253 L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~----------~~~~ 322 (966)
+.|++++.++++|.|++++.|.+++|++++|..|.++|.+++|.+|..|||||+||+|+|.+.+.. ....
T Consensus 155 l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~ 234 (341)
T cd01372 155 IQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNST 234 (341)
T ss_pred ceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCce
Confidence 899999999999999999999999999999999999999999999999999999999999987652 3455
Q ss_pred ccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCC---CCCCCCCCccccccccccCCCcceeEE
Q 002104 323 EKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK---RHVPYRNSKLTQVLKDSLGEDSKTLML 399 (966)
Q Consensus 323 ~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~---~hIPYRdSKLTrLLqDSLGGNSKTlMI 399 (966)
..|+|+||||||||+..++++.|.+++|+..||+||.+|++||.+|+.++ .|||||+||||+||+|+||||++|+||
T Consensus 235 ~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I 314 (341)
T cd01372 235 LTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMI 314 (341)
T ss_pred eeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEE
Confidence 78999999999999999999999999999999999999999999999876 799999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhhhcc
Q 002104 400 VHVSPKEDDLCETICSLNFATRVKSVH 426 (966)
Q Consensus 400 a~ISPs~~~~eETLsTLrFAsRaK~I~ 426 (966)
+||||...+++||++||+||+|+|+|+
T Consensus 315 ~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 315 ACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999985
No 20
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-74 Score=664.07 Aligned_cols=322 Identities=38% Similarity=0.608 Sum_probs=295.5
Q ss_pred CCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeC--------CCCCceeecceeeCCC-------CChHHHHHhh-
Q 002104 100 KGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLA--------DNKSKNYSFDKVFHPG-------SSQDEVFSEV- 163 (966)
Q Consensus 100 kGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~--------~~k~k~F~FD~VF~p~-------asQedVF~eV- 163 (966)
..+|||+|||||++..|..-...+++.++.++.++... .+++++|.||++|++. +.|+.||..+
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 46899999999999999888888899999998877543 2467899999999875 6899999998
Q ss_pred HHHHHHHhcCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHh---cCCeeEEEEEEEEEecceeecccCC
Q 002104 164 EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME---SNHAFRISFSMLEIYLGSLKDLLVT 240 (966)
Q Consensus 164 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e---~~~~f~VsVS~lEIYNE~V~DLL~~ 240 (966)
..+|+++|+|||+||||||||||||||||+|+.++||||||.++.||..+.. ....|.|.|||+|||||++||||.|
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdP 162 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDP 162 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCC
Confidence 5689999999999999999999999999999999999999999999999854 3568999999999999999999988
Q ss_pred CCCCCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEe--cCC
Q 002104 241 QPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCF--DAP 318 (966)
Q Consensus 241 ~~~~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~--n~~ 318 (966)
.... ..++++++.--|.||.||++..|.|++|+-.++..|.++|++++|+||..|||||+||.|.|++. +..
T Consensus 163 k~ss------qtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~k 236 (1714)
T KOG0241|consen 163 KGSS------QTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLK 236 (1714)
T ss_pred CCCc------ceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccc
Confidence 7653 56999999999999999999999999999999999999999999999999999999999999864 332
Q ss_pred --cCccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhC------CCCCCCCCCcccccccccc
Q 002104 319 --ERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRR------KRHVPYRNSKLTQVLKDSL 390 (966)
Q Consensus 319 --~~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k------~~hIPYRdSKLTrLLqDSL 390 (966)
......|+|.|||||||||+.++++.|.|++|+.+||+||++||.||+||+.+ .++||||||.||+||+|+|
T Consensus 237 tg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~L 316 (1714)
T KOG0241|consen 237 TGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNL 316 (1714)
T ss_pred cCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhc
Confidence 23346799999999999999999999999999999999999999999999853 4699999999999999999
Q ss_pred CCCcceeEEEecCCCCCCHHHHHHHHHHHHHhhhccc
Q 002104 391 GEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 427 (966)
Q Consensus 391 GGNSKTlMIa~ISPs~~~~eETLsTLrFAsRaK~I~l 427 (966)
||||+|+||+||||+..+|+||++|||||.|||.|++
T Consensus 317 GGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN 353 (1714)
T KOG0241|consen 317 GGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVN 353 (1714)
T ss_pred CCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999985
No 21
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=6.1e-73 Score=621.45 Aligned_cols=316 Identities=41% Similarity=0.628 Sum_probs=277.9
Q ss_pred CEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeC----------CCCCceeecceeeCCCCChHHHHHh-hHHHHHHH
Q 002104 102 NIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLA----------DNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSV 170 (966)
Q Consensus 102 nIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~----------~~k~k~F~FD~VF~p~asQedVF~e-V~PLV~sv 170 (966)
.|+|+||+||+...+... ..+..++..+.+..+ ....+.|.||+||++ ++|++||+. +.|+|+++
T Consensus 1 ~i~V~vRvRP~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~ 76 (334)
T cd01375 1 TIQVFVRVRPTPTKQGSS---IKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSA 76 (334)
T ss_pred CeEEEEECCCCCCCCCcc---EEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHH
Confidence 489999999998744321 112222222222221 123567999999999 999999999 58999999
Q ss_pred hcCCcccEEeeccCCCCcceecccCC---CCCCcHHHHHHHHHHHHHhc-CCeeEEEEEEEEEecceeecccCCCCCCCC
Q 002104 171 LDGYNACIFAYGQTGTGKSFTMEGTP---DSPGIVPRAIEAIFKQAMES-NHAFRISFSMLEIYLGSLKDLLVTQPTKAT 246 (966)
Q Consensus 171 LdGyNvcIfAYGQTGSGKTyTM~G~~---e~pGIIPRale~LF~~i~e~-~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~ 246 (966)
++|||+||||||||||||||||+|+. .++||+||++++||+.+... +..|.|++||+|||||+|+|||.+.+..
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~-- 154 (334)
T cd01375 77 LDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEA-- 154 (334)
T ss_pred hCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccc--
Confidence 99999999999999999999999976 47899999999999998654 4689999999999999999999876432
Q ss_pred CCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEe--cCCcCcccc
Q 002104 247 DPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCF--DAPERRREK 324 (966)
Q Consensus 247 ~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~--n~~~~~~~~ 324 (966)
....+.+.|++++.++++|.|++++.|.+++|++.++..|.++|.+++|.+|..|||||+||+|+|.+. .........
T Consensus 155 ~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~ 234 (334)
T cd01375 155 LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRL 234 (334)
T ss_pred cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEE
Confidence 112346899999999999999999999999999999999999999999999999999999999999987 334455678
Q ss_pred ceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCC-CCCCCCCCccccccccccCCCcceeEEEecC
Q 002104 325 NKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK-RHVPYRNSKLTQVLKDSLGEDSKTLMLVHVS 403 (966)
Q Consensus 325 SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~-~hIPYRdSKLTrLLqDSLGGNSKTlMIa~IS 403 (966)
|+|+|||||||||..++++.+.+++|+..||+||++|++||.+|++++ .|||||+||||+||+|+|||||+|+||+|||
T Consensus 235 s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vs 314 (334)
T cd01375 235 SKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIW 314 (334)
T ss_pred EEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeC
Confidence 999999999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhh
Q 002104 404 PKEDDLCETICSLNFATRVK 423 (966)
Q Consensus 404 Ps~~~~eETLsTLrFAsRaK 423 (966)
|+..+++||++||+||+|++
T Consensus 315 p~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 315 VEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999985
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=3.6e-70 Score=594.23 Aligned_cols=315 Identities=46% Similarity=0.732 Sum_probs=286.9
Q ss_pred CEEEEEEeCCCCCCcCCCCCCcEEEeCC-CceEEEeCC----CCCceeecceeeCCCCChHHHHHh-hHHHHHHHhcCCc
Q 002104 102 NIRVFCRIRPISMGENFGRLRPVIAKDS-SNVLLKLAD----NKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYN 175 (966)
Q Consensus 102 nIRV~~RVRPl~~~E~~~~~~~vv~~d~-~~v~l~~~~----~k~k~F~FD~VF~p~asQedVF~e-V~PLV~svLdGyN 175 (966)
+|+|||||||+...|.. ....++.+++ ..+.+.... ...+.|.||+||+++++|++||+. +.|+|+++++|+|
T Consensus 1 ~i~V~vRvrP~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~ 79 (328)
T cd00106 1 NIRVVVRIRPLNGRESK-SEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYN 79 (328)
T ss_pred CeEEEEEcCCCCccccc-CCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 69999999999887633 2334666776 455554322 346899999999999999999998 5799999999999
Q ss_pred ccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHhc---CCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCc
Q 002104 176 ACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMES---NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPC 252 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e~---~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~~ 252 (966)
+||||||+|||||||||+|+.+++|||||++++||+.+... ...|.|++||+|||+|+|+|||++.. ....
T Consensus 80 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~------~~~~ 153 (328)
T cd00106 80 GTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEP------PSKP 153 (328)
T ss_pred eeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCC------CCCC
Confidence 99999999999999999999999999999999999998765 46899999999999999999998753 1235
Q ss_pred ceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCcCc--cccceeEEE
Q 002104 253 LSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERR--REKNKIWLV 330 (966)
Q Consensus 253 L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~~~--~~~SKL~LV 330 (966)
+.+++++.++++|.|++++.|.|++|+++++..|.++|.+++|.+|..|||||+||+|+|.+.+..... ...|+|+||
T Consensus 154 l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~V 233 (328)
T cd00106 154 LSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLV 233 (328)
T ss_pred cEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999988765543 678999999
Q ss_pred eccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCC--CCCCCCCCccccccccccCCCcceeEEEecCCCCCC
Q 002104 331 DLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK--RHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDD 408 (966)
Q Consensus 331 DLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~--~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~ 408 (966)
||||+|+..+.+..+.+++|+..||+||++|++||.+|+.+. .|||||+||||+||+|+|||+++|+||+||+|...+
T Consensus 234 DLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~ 313 (328)
T cd00106 234 DLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSEN 313 (328)
T ss_pred ECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhh
Confidence 999999999999999999999999999999999999999988 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 002104 409 LCETICSLNFATRVK 423 (966)
Q Consensus 409 ~eETLsTLrFAsRaK 423 (966)
++||++||+||+|+|
T Consensus 314 ~~eTl~tL~~a~r~~ 328 (328)
T cd00106 314 YDETLSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999986
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=4.9e-70 Score=595.84 Aligned_cols=321 Identities=44% Similarity=0.715 Sum_probs=292.4
Q ss_pred CEEEEEEeCCCCCCcCCCCCCcEEEeCCC---ceEEEeC--CCCCceeecceeeCCCCChHHHHHh-hHHHHHHHhcCCc
Q 002104 102 NIRVFCRIRPISMGENFGRLRPVIAKDSS---NVLLKLA--DNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYN 175 (966)
Q Consensus 102 nIRV~~RVRPl~~~E~~~~~~~vv~~d~~---~v~l~~~--~~k~k~F~FD~VF~p~asQedVF~e-V~PLV~svLdGyN 175 (966)
+|+|+|||||+...|......+++.+.+. .+++... ....+.|.||+||+++++|++||+. +.|+|+++++|+|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~ 80 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN 80 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence 69999999999988865555556666544 3433322 2456889999999999999999998 5899999999999
Q ss_pred ccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHhc--CCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcc
Q 002104 176 ACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMES--NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCL 253 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e~--~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~~L 253 (966)
+||||||+|||||||||+|+.+++||+||++++||+.+... ...|.|++||+|||+|+++|||++.. +.+
T Consensus 81 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~--------~~l 152 (335)
T smart00129 81 ATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSP--------KKL 152 (335)
T ss_pred eeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCC--------CCc
Confidence 99999999999999999999999999999999999988654 46899999999999999999997642 348
Q ss_pred eeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEe--cCCcCccccceeEEEe
Q 002104 254 SIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCF--DAPERRREKNKIWLVD 331 (966)
Q Consensus 254 ~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~--n~~~~~~~~SKL~LVD 331 (966)
.|++++.+++++.|++++.|.|++|+++++..|..+|.+++|.+|..|||||+||+|+|.+. +........|+|+|||
T Consensus 153 ~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VD 232 (335)
T smart00129 153 EIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVD 232 (335)
T ss_pred EEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999966 5556667899999999
Q ss_pred ccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhh--CCCCCCCCCCccccccccccCCCcceeEEEecCCCCCCH
Q 002104 332 LGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR--RKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDL 409 (966)
Q Consensus 332 LAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~--k~~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~ 409 (966)
|||+||..+.++.|.+++|+..||+||.+|++||.+|+. +..|||||+|+||+||+++|||+++|+||+||||...++
T Consensus 233 LaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~ 312 (335)
T smart00129 233 LAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNL 312 (335)
T ss_pred CCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccch
Confidence 999999999999999999999999999999999999998 678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCcC
Q 002104 410 CETICSLNFATRVKSVHLGHE 430 (966)
Q Consensus 410 eETLsTLrFAsRaK~I~l~~~ 430 (966)
+||++||+||+++++|+..|.
T Consensus 313 ~eTl~tL~~a~~~~~i~~~p~ 333 (335)
T smart00129 313 EETLSTLRFASRAKEIKNKAI 333 (335)
T ss_pred HHHHHHHHHHHHHhhcccCCC
Confidence 999999999999999998764
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=7.2e-70 Score=593.45 Aligned_cols=314 Identities=43% Similarity=0.688 Sum_probs=274.8
Q ss_pred EeCCCCCCcCCCCCCcEEEeCCCc--eEE----EeCCCCCceeecceeeCCCCChHHHHHh-hHHHHHHHhcCCcccEEe
Q 002104 108 RIRPISMGENFGRLRPVIAKDSSN--VLL----KLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACIFA 180 (966)
Q Consensus 108 RVRPl~~~E~~~~~~~vv~~d~~~--v~l----~~~~~k~k~F~FD~VF~p~asQedVF~e-V~PLV~svLdGyNvcIfA 180 (966)
||||++..|........+...... ... .......+.|.||+||+++++|++||+. +.|+|+++++|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 999999877654433333332111 111 1123456889999999999999999999 699999999999999999
Q ss_pred eccCCCCcceecccC--CCCCCcHHHHHHHHHHHHHhcC----CeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcce
Q 002104 181 YGQTGTGKSFTMEGT--PDSPGIVPRAIEAIFKQAMESN----HAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLS 254 (966)
Q Consensus 181 YGQTGSGKTyTM~G~--~e~pGIIPRale~LF~~i~e~~----~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~~L~ 254 (966)
||+|||||||||+|+ ..++||+||++++||..+.... ..|.|+|||+|||+|.|+|||++.... ....+.
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~----~~~~l~ 156 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSK----SRKPLK 156 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSS----TTSEBE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccc----cccccc
Confidence 999999999999999 8999999999999999987643 479999999999999999999876421 123589
Q ss_pred eeecCCCc-EEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCcCc----cccceeEE
Q 002104 255 IHTEPKGG-IEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERR----REKNKIWL 329 (966)
Q Consensus 255 Ired~~gg-v~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~~~----~~~SKL~L 329 (966)
|++++..| ++|.|++++.|.+++++.++|..|.++|.++.|.+|..|||||+||+|+|.+.+..... ...|+|+|
T Consensus 157 i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~ 236 (335)
T PF00225_consen 157 IREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTF 236 (335)
T ss_dssp EEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEE
T ss_pred eeeccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceee
Confidence 99999966 99999999999999999999999999999999999999999999999999988765443 47899999
Q ss_pred EeccCCcccccccc-cchhHHHHHHhhhhHHHHHHHHHHHhhC--CCCCCCCCCccccccccccCCCcceeEEEecCCCC
Q 002104 330 VDLGGSERVLKTKA-RGRRLDEGKAINLSLSALGDVIYALQRR--KRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKE 406 (966)
Q Consensus 330 VDLAGSER~~kt~a-~G~rlkEa~~INkSLsALG~VI~ALs~k--~~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~ 406 (966)
|||||+||..+..+ .+.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+|+|||||+|+||+||||..
T Consensus 237 vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~ 316 (335)
T PF00225_consen 237 VDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSS 316 (335)
T ss_dssp EEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBG
T ss_pred eecccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCcc
Confidence 99999999998886 4788999999999999999999999998 99999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhc
Q 002104 407 DDLCETICSLNFATRVKSV 425 (966)
Q Consensus 407 ~~~eETLsTLrFAsRaK~I 425 (966)
.+++||++||+||+++|+|
T Consensus 317 ~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 317 EDYEETLSTLRFASRAREI 335 (335)
T ss_dssp GGHHHHHHHHHHHHHHTTE
T ss_pred ccHHHHHHHHHHHHHHcCC
Confidence 9999999999999999986
No 25
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.4e-66 Score=577.22 Aligned_cols=318 Identities=33% Similarity=0.478 Sum_probs=283.3
Q ss_pred CCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeCCC---------CCceeecceeeCCCCChHHHHHh-hHHHHHH
Q 002104 100 KGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADN---------KSKNYSFDKVFHPGSSQDEVFSE-VEPVIKS 169 (966)
Q Consensus 100 kGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~~~---------k~k~F~FD~VF~p~asQedVF~e-V~PLV~s 169 (966)
...|.|+||-||++..|.......+|.+.+.++++..... ..+.|.||++|+..++++.||.. ++|||..
T Consensus 207 ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~ 286 (676)
T KOG0246|consen 207 EHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKT 286 (676)
T ss_pred cceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHH
Confidence 3469999999999999976666668888776665543211 23679999999999999999997 7999999
Q ss_pred HhcCCcccEEeeccCCCCcceecccCC------CCCCcHHHHHHHHHHHHHhc---CCeeEEEEEEEEEecceeecccCC
Q 002104 170 VLDGYNACIFAYGQTGTGKSFTMEGTP------DSPGIVPRAIEAIFKQAMES---NHAFRISFSMLEIYLGSLKDLLVT 240 (966)
Q Consensus 170 vLdGyNvcIfAYGQTGSGKTyTM~G~~------e~pGIIPRale~LF~~i~e~---~~~f~VsVS~lEIYNE~V~DLL~~ 240 (966)
+|+|--+|+||||||||||||||.|+. ...||..++.+++|..+... ...+.|++||||||+.+|||||..
T Consensus 287 IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~ 366 (676)
T KOG0246|consen 287 IFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND 366 (676)
T ss_pred HHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc
Confidence 999999999999999999999998863 34699999999999988664 347899999999999999999976
Q ss_pred CCCCCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCcC
Q 002104 241 QPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPER 320 (966)
Q Consensus 241 ~~~~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~~ 320 (966)
.. .|.+.+|.++.|.|.||++..|.+.++++.+|..|+..|+++.|..|+.|||||+||+|.+...- .
T Consensus 367 k~---------KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~---~ 434 (676)
T KOG0246|consen 367 KK---------KLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG---E 434 (676)
T ss_pred cc---------ceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC---c
Confidence 32 48999999999999999999999999999999999999999999999999999999999997532 2
Q ss_pred ccccceeEEEeccCCccccccc-ccchhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCC-CcceeE
Q 002104 321 RREKNKIWLVDLGGSERVLKTK-ARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGE-DSKTLM 398 (966)
Q Consensus 321 ~~~~SKL~LVDLAGSER~~kt~-a~G~rlkEa~~INkSLsALG~VI~ALs~k~~hIPYRdSKLTrLLqDSLGG-NSKTlM 398 (966)
...+||+.||||||+||...+. +..+...||+.|||||+||..||+||...+.|+|||.||||++|+|||-| ||+|+|
T Consensus 435 ~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcM 514 (676)
T KOG0246|consen 435 FKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCM 514 (676)
T ss_pred ceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEE
Confidence 4678999999999999987654 55567779999999999999999999999999999999999999999988 999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHhhhcccCc
Q 002104 399 LVHVSPKEDDLCETICSLNFATRVKSVHLGH 429 (966)
Q Consensus 399 Ia~ISPs~~~~eETLsTLrFAsRaK~I~l~~ 429 (966)
|+||||...+.+.||+|||||.|||......
T Consensus 515 IA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~ 545 (676)
T KOG0246|consen 515 IATISPGISSCEHTLNTLRYADRVKELSVDG 545 (676)
T ss_pred EEEeCCCcchhhhhHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999876543
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-65 Score=588.16 Aligned_cols=327 Identities=35% Similarity=0.580 Sum_probs=285.8
Q ss_pred cCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeC-----------CCCCceeecceeeCCCCChHHHHHh-hHH
Q 002104 98 DSKGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLA-----------DNKSKNYSFDKVFHPGSSQDEVFSE-VEP 165 (966)
Q Consensus 98 elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~-----------~~k~k~F~FD~VF~p~asQedVF~e-V~P 165 (966)
+.+..|.||||+||+..... ...++...+..++++..+ ....+.|.|.+||+|+++|.+||+. +.|
T Consensus 28 ~~~d~v~v~~rvrP~~~~~~--~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~p 105 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSDASE--DEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAP 105 (809)
T ss_pred hhhcchheeEeecCCCCCcc--ccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHH
Confidence 45677899999999884221 223455666666666421 2235789999999999999999998 699
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHh------------------------------
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME------------------------------ 215 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e------------------------------ 215 (966)
+|.+++.|.|..+|+||-|||||||||.|++..+||+||+++-||..++.
T Consensus 106 lV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr 185 (809)
T KOG0247|consen 106 LVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKR 185 (809)
T ss_pred HHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999952200
Q ss_pred ------------------------------------cCCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcceeeecC
Q 002104 216 ------------------------------------SNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP 259 (966)
Q Consensus 216 ------------------------------------~~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~~L~Ired~ 259 (966)
.+..|.|+|||+|||||.|||||.+.+.... .+....+++|.
T Consensus 186 ~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~--~~~~~ll~~d~ 263 (809)
T KOG0247|consen 186 EAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGK--LQKLKLLREDT 263 (809)
T ss_pred hhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccch--hhhhhhhhhcc
Confidence 1235899999999999999999987654332 22236678999
Q ss_pred CCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCC--cCccccceeEEEeccCCcc
Q 002104 260 KGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP--ERRREKNKIWLVDLGGSER 337 (966)
Q Consensus 260 ~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~--~~~~~~SKL~LVDLAGSER 337 (966)
+|..+|.|+++|.|.|.+|++++|+.|.++|++++|.+|..|||||+||+|.|.+.... ......|.|.|||||||||
T Consensus 264 ~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSER 343 (809)
T KOG0247|consen 264 NGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSER 343 (809)
T ss_pred CCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccchh
Confidence 99999999999999999999999999999999999999999999999999999876655 4566789999999999999
Q ss_pred cccccccchhHHHHHHhhhhHHHHHHHHHHHhhC-----CCCCCCCCCccccccccccCCCcceeEEEecCCCCCCHHHH
Q 002104 338 VLKTKARGRRLDEGKAINLSLSALGDVIYALQRR-----KRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCET 412 (966)
Q Consensus 338 ~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k-----~~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~eET 412 (966)
..++++.|.||+||++||.||.+||.||.+|+++ +.+|||||||||++++.+|.|..+.+||+||+|..++|+|+
T Consensus 344 t~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEn 423 (809)
T KOG0247|consen 344 TNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDEN 423 (809)
T ss_pred cccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHH
Confidence 9999999999999999999999999999999864 46899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccC
Q 002104 413 ICSLNFATRVKSVHLG 428 (966)
Q Consensus 413 LsTLrFAsRaK~I~l~ 428 (966)
++.|+||.-+..|.+.
T Consensus 424 l~vlkFaeiaq~v~v~ 439 (809)
T KOG0247|consen 424 LNVLKFAEIAQEVEVA 439 (809)
T ss_pred HHHHHHHHhccccccc
Confidence 9999999999998743
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.1e-64 Score=587.45 Aligned_cols=352 Identities=38% Similarity=0.550 Sum_probs=298.6
Q ss_pred eCCCCCCcCCCCCCcEEEeCCCceEEEeCCCCCceeecceeeCCCCChHHHHHh-hHHHHHHHhcCCcccEEeeccCCCC
Q 002104 109 IRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACIFAYGQTGTG 187 (966)
Q Consensus 109 VRPl~~~E~~~~~~~vv~~d~~~v~l~~~~~k~k~F~FD~VF~p~asQedVF~e-V~PLV~svLdGyNvcIfAYGQTGSG 187 (966)
|||+...|...++..++.+.+.+..+.. ++...|+||+||....+|.++|+. |+|+++.+++|||++++||||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~i--g~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsg 78 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAI--GKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSG 78 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceee--cCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCC
Confidence 6899887765554444443333322222 456789999999999999999998 7999999999999999999999999
Q ss_pred cceecccC----CCCCCcHHHHHHHHHHHHHhc-CCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcceeeecCCCc
Q 002104 188 KSFTMEGT----PDSPGIVPRAIEAIFKQAMES-NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGG 262 (966)
Q Consensus 188 KTyTM~G~----~e~pGIIPRale~LF~~i~e~-~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~~L~Ired~~gg 262 (966)
|||||.+. .+..|+|||+++.+|..+... ...|.|.|||+|||++.|+|||.+.... ..+.+++ ++|+
T Consensus 79 kTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~------~~i~~~e-~~g~ 151 (913)
T KOG0244|consen 79 KTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLK------ANIKLRE-PKGE 151 (913)
T ss_pred ceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhh------hceeccc-cCCc
Confidence 99999887 344699999999999998653 3579999999999999999999743322 2267777 8899
Q ss_pred EEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEec-CCcCccccceeEEEeccCCcccccc
Q 002104 263 IEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFD-APERRREKNKIWLVDLGGSERVLKT 341 (966)
Q Consensus 263 v~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n-~~~~~~~~SKL~LVDLAGSER~~kt 341 (966)
+.+.|++++.|.+..++...|..|.-.|++++|+||+.|||||+||++.+++.. ........+||+|||||||||.++|
T Consensus 152 it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kkT 231 (913)
T KOG0244|consen 152 ITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKKT 231 (913)
T ss_pred eEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeecccccccccc
Confidence 999999999999999999999999999999999999999999999999997633 3334456799999999999999999
Q ss_pred cccchhHHHHHHhhhhHHHHHHHHHHHhhCCC--CCCCCCCccccccccccCCCcceeEEEecCCCCCCHHHHHHHHHHH
Q 002104 342 KARGRRLDEGKAINLSLSALGDVIYALQRRKR--HVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFA 419 (966)
Q Consensus 342 ~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~--hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~eETLsTLrFA 419 (966)
++.|.|++||.+||.+|++||+||+||...+. |||||+|||||||||+||||+.|+||+||||+..+++||++||+||
T Consensus 232 ~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya 311 (913)
T KOG0244|consen 232 KAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYA 311 (913)
T ss_pred ccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHh
Confidence 99999999999999999999999999988665 9999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 002104 420 TRVKSVHLGHEDSNEARDQKEVSMKNLQQKMKKIEEERLRVR-----GEIENLSEKLE 472 (966)
Q Consensus 420 sRaK~I~l~~~~~~~~~~~k~~~~~~Lqqkik~LeeE~~~lr-----~EIe~Lk~~Le 472 (966)
.||+.|++.+.... +.....+..++++++.|+.++...+ .+|+.|..+..
T Consensus 312 ~Rak~iknk~vvN~---d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e~~ 366 (913)
T KOG0244|consen 312 DRAKQIKNKPVVNQ---DPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFENV 366 (913)
T ss_pred hHHHHhcccccccc---cHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhhhh
Confidence 99999998776544 5555667777888887777766554 34554444433
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.2e-61 Score=557.75 Aligned_cols=317 Identities=40% Similarity=0.653 Sum_probs=283.7
Q ss_pred CCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeCCCCCceeecceeeCCCCChHHHHHh-hHHHHHHHhcCCcccE
Q 002104 100 KGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACI 178 (966)
Q Consensus 100 kGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~~~k~k~F~FD~VF~p~asQedVF~e-V~PLV~svLdGyNvcI 178 (966)
-.+++++++..|-..++. ....... ..+.....+...|.||+||++.++|++||+. +.|++++++.|||+||
T Consensus 21 ~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~Tv 93 (568)
T COG5059 21 VSDIKSTIRIIPGELGER------LINTSKK-SHVSLEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTV 93 (568)
T ss_pred ecCceEEEeecCCCcchh------eeecccc-cccccccccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceE
Confidence 467889999998654431 1111111 1111222226789999999999999999998 7999999999999999
Q ss_pred EeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHhcC--CeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcceee
Q 002104 179 FAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESN--HAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIH 256 (966)
Q Consensus 179 fAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e~~--~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~~L~Ir 256 (966)
||||||||||||||.|..+.+||||+++.+||+.+.... ..|.|.+||+|||||+++|||.+.... +.++
T Consensus 94 fayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~--------~~~~ 165 (568)
T COG5059 94 FAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEES--------LNIR 165 (568)
T ss_pred EEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCcccc--------cccc
Confidence 999999999999999999999999999999999987655 789999999999999999999775432 6688
Q ss_pred ecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCcCccccceeEEEeccCCc
Q 002104 257 TEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVDLGGSE 336 (966)
Q Consensus 257 ed~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~~~~~~SKL~LVDLAGSE 336 (966)
++..+++.|.|+++..|.+.+|++.+|+.|..+|+++.|.+|..|||||++|++.+.+.+...+....++|+||||||||
T Consensus 166 ~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE 245 (568)
T COG5059 166 EDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSE 245 (568)
T ss_pred ccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccceecceEEEEeecccc
Confidence 99999999999999999999999999999999999999999999999999999999998877666666899999999999
Q ss_pred ccccccccchhHHHHHHhhhhHHHHHHHHHHHhh--CCCCCCCCCCccccccccccCCCcceeEEEecCCCCCCHHHHHH
Q 002104 337 RVLKTKARGRRLDEGKAINLSLSALGDVIYALQR--RKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETIC 414 (966)
Q Consensus 337 R~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~--k~~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~eETLs 414 (966)
++..+++.+.|++|+..||+||.+||+||.+|.. +..|||||+|||||+|+++|||+++|.|||||+|...+++||.+
T Consensus 246 ~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~ 325 (568)
T COG5059 246 RAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETIN 325 (568)
T ss_pred ccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHH
Confidence 9999999999999999999999999999999997 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCcCC
Q 002104 415 SLNFATRVKSVHLGHED 431 (966)
Q Consensus 415 TLrFAsRaK~I~l~~~~ 431 (966)
||+||.|+++|+.....
T Consensus 326 tL~~a~rak~I~~~~~~ 342 (568)
T COG5059 326 TLKFASRAKSIKNKIQV 342 (568)
T ss_pred HHHHHHHHhhcCCcccc
Confidence 99999999999865543
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1.6e-50 Score=410.21 Aligned_cols=176 Identities=52% Similarity=0.799 Sum_probs=168.9
Q ss_pred HHHhhHHHHHHHhcCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEecceeeccc
Q 002104 159 VFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLL 238 (966)
Q Consensus 159 VF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e~~~~f~VsVS~lEIYNE~V~DLL 238 (966)
||+.+.|+|+.+++|||+||||||||||||||||+|+.+++||+||++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~------------------------------ 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD------------------------------ 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH------------------------------
Confidence 99997799999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCC
Q 002104 239 VTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP 318 (966)
Q Consensus 239 ~~~~~~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~ 318 (966)
+++++..|.++|.+++|.+|..|||||+||+|++...+..
T Consensus 58 ----------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~ 97 (186)
T cd01363 58 ----------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNAL 97 (186)
T ss_pred ----------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecC
Confidence 7889999999999999999999999999999999987654
Q ss_pred c---CccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcc
Q 002104 319 E---RRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSK 395 (966)
Q Consensus 319 ~---~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~hIPYRdSKLTrLLqDSLGGNSK 395 (966)
. .....++|+||||||||+..++++.+.+++|+..||+||++|++||.+|++++.|||||+||||+||||+|||||+
T Consensus 98 ~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~ 177 (186)
T cd01363 98 ASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSR 177 (186)
T ss_pred CCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCe
Confidence 4 5567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCC
Q 002104 396 TLMLVHVSP 404 (966)
Q Consensus 396 TlMIa~ISP 404 (966)
|+||+||||
T Consensus 178 t~~i~~vsP 186 (186)
T cd01363 178 TLMVACISP 186 (186)
T ss_pred EEEEEEeCc
Confidence 999999999
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.72 E-value=6.7e-11 Score=139.96 Aligned_cols=261 Identities=27% Similarity=0.315 Sum_probs=166.8
Q ss_pred HHHHhhhhhhccCCCCEEEEEEeCCCCCCc--CCC---------CCCcEEEeCCCceEEEeCCCCCceeecceeeCCCCC
Q 002104 87 IQRRQILNEFLDSKGNIRVFCRIRPISMGE--NFG---------RLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSS 155 (966)
Q Consensus 87 ~eRk~L~N~l~elkGnIRV~~RVRPl~~~E--~~~---------~~~~vv~~d~~~v~l~~~~~k~k~F~FD~VF~p~as 155 (966)
+.+|.|++.+.... +++|+|+|+|..... ... .....+..... .........|.||.+|.+...
T Consensus 292 kLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~----~~~~~~~~~~~~d~~~~~~~~ 366 (568)
T COG5059 292 KLTRLLQDSLGGNC-NTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS----SDSSREIEEIKFDLSEDRSEI 366 (568)
T ss_pred HHHHHHHHhcCCCc-cEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCc----CcchHHHHHHHhhhhhhhhhh
Confidence 57889999999888 999999999987432 110 11111111110 001122356999999999999
Q ss_pred hHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHH---hcCCeeEEEEEEEEEecc
Q 002104 156 QDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAM---ESNHAFRISFSMLEIYLG 232 (966)
Q Consensus 156 QedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~---e~~~~f~VsVS~lEIYNE 232 (966)
+..++.....+++..++| +++||++++|+++||.- ...++..-.+...|.... ...+.+...+-++++|-.
T Consensus 367 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 440 (568)
T COG5059 367 EILVFREQSQLSQSSLSG----IFAYMQSLKKETETLKS--RIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEID 440 (568)
T ss_pred hhHHHHHHHhhhhhhhhh----HHHHHhhhhhhhhcccc--hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999963 334565666566676543 334455555555666622
Q ss_pred eeecccCCCCCCCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEE
Q 002104 233 SLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISI 312 (966)
Q Consensus 233 ~V~DLL~~~~~~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I 312 (966)
...+++....... ...+............+.........+..... .+...+..+.++.|.+++++|++|....
T Consensus 441 ~~~~~~~e~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~ 513 (568)
T COG5059 441 RLLLLREEELSKK------KTKIHKLNKLRHDLSSLLSSIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHL 513 (568)
T ss_pred HHHHHHHHhcCCh------HHHHHHHHHHHHHHHHhhhhcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcc
Confidence 2222222211100 00000000000000000011111111222222 4677888999999999999999998777
Q ss_pred EEecCCcCccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHh
Q 002104 313 TCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQ 369 (966)
Q Consensus 313 ~~~n~~~~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs 369 (966)
........... +++|||||+||. -+..-|.++++..++|++|..+|++|.++.
T Consensus 514 ~~~~~~~~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 514 NGSNSSTKELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred cchhhhhHHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 54443222222 799999999999 899999999999999999999999998864
No 31
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=94.52 E-value=0.0066 Score=74.26 Aligned_cols=89 Identities=29% Similarity=0.577 Sum_probs=67.4
Q ss_pred CceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHhcCCee
Q 002104 141 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAF 220 (966)
Q Consensus 141 ~k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e~~~~f 220 (966)
...+.|+++..+...+.--+....+.+..++++++.. +|++|++.+.....|++-+....++..........
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (670)
T KOG0239|consen 25 KKRFELARVYSPSVGQPSLFSDVQPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFKELIDLANSDKTSN 96 (670)
T ss_pred ccccCccccccccccccccCCccccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhhhcccccccCCCch
Confidence 4668888888877666666666777777888888775 89999999999888998888888887543322211
Q ss_pred EEEEEEEEEecceeecccCCCC
Q 002104 221 RISFSMLEIYLGSLKDLLVTQP 242 (966)
Q Consensus 221 ~VsVS~lEIYNE~V~DLL~~~~ 242 (966)
.++.|++.+.|++....
T Consensus 97 -----~~~~~~~~~~~~~~~~q 113 (670)
T KOG0239|consen 97 -----VVEAYNERLRDLLSELQ 113 (670)
T ss_pred -----hHHHHHHHHhhhccccc
Confidence 68899999999996543
No 32
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.42 E-value=0.022 Score=60.44 Aligned_cols=50 Identities=26% Similarity=0.624 Sum_probs=33.4
Q ss_pred ceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
..|+||.-+. ...++..|..+..+...--..+|. +|-||++|+||||-|.
T Consensus 3 ~~~tFdnfv~-g~~N~~a~~~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 3 PKYTFDNFVV-GESNELAYAAAKAIAENPGERYNP-LFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp TT-SCCCS---TTTTHHHHHHHHHHHHSTTTSSSE-EEEEESTTSSHHHHHH
T ss_pred CCCccccCCc-CCcHHHHHHHHHHHHhcCCCCCCc-eEEECCCCCCHHHHHH
Confidence 4699998554 455777887776666552223444 7889999999999764
No 33
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=91.66 E-value=0.37 Score=57.66 Aligned_cols=87 Identities=23% Similarity=0.433 Sum_probs=56.6
Q ss_pred ceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecccC---CCCCCcH----HHHHHHHHHHHH
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT---PDSPGIV----PRAIEAIFKQAM 214 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~---~e~pGII----PRale~LF~~i~ 214 (966)
..|..-.-|.|.-.|-. .+..+|+.+-.|...- .-.|.|||||||||-.- -.-|-|| --...+||....
T Consensus 3 ~~F~l~s~f~PaGDQP~---AI~~Lv~gi~~g~~~Q-tLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 3 KPFKLHSPFKPAGDQPE---AIAELVEGIENGLKHQ-TLLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred CceEeccCCCCCCCcHH---HHHHHHHHHhcCceee-EEeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 45777777888888864 3566777776665543 34699999999999641 1111111 123456666654
Q ss_pred h--cCCeeEEEEEEEEEecc
Q 002104 215 E--SNHAFRISFSMLEIYLG 232 (966)
Q Consensus 215 e--~~~~f~VsVS~lEIYNE 232 (966)
+ .+..+...|||+.-|.-
T Consensus 79 ~fFP~NaVEYFVSYYDYYQP 98 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQP 98 (663)
T ss_pred HhCcCcceEEEeeeccccCc
Confidence 4 46678889999998853
No 34
>PRK06620 hypothetical protein; Validated
Probab=91.39 E-value=0.12 Score=54.79 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=35.5
Q ss_pred CceeecceeeCCCCChHHHHHhhHHHHHHHhcCCc---ccEEeeccCCCCcceecc
Q 002104 141 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYN---ACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 141 ~k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyN---vcIfAYGQTGSGKTyTM~ 193 (966)
...|+||..+.. .+++..|..+..+... -|+| -.++-||++|+||||.+.
T Consensus 10 ~~~~tfd~Fvvg-~~N~~a~~~~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 10 SSKYHPDEFIVS-SSNDQAYNIIKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCchhhEec-ccHHHHHHHHHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 456899985553 4456688876655542 1444 359999999999999885
No 35
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.10 E-value=0.16 Score=61.91 Aligned_cols=51 Identities=25% Similarity=0.503 Sum_probs=35.8
Q ss_pred ceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceeccc
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 194 (966)
..|+||..+-.. ++..+|..+..++...-.+||. ||-||.+|+||||-+..
T Consensus 283 ~~~TFDnFvvG~-sN~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVIGA-SNRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcCCC-ccHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 348899854333 3556666666666554456776 89999999999998854
No 36
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=90.08 E-value=0.2 Score=57.59 Aligned_cols=51 Identities=27% Similarity=0.492 Sum_probs=34.1
Q ss_pred CceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 141 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 141 ~k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
...|+||.-.. ...+...|..+..+...--..|| .++-||++|+||||.+.
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCCccccccc-CCcHHHHHHHHHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 35789998332 34566677666665554212244 47889999999999874
No 37
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=89.83 E-value=0.2 Score=58.52 Aligned_cols=51 Identities=27% Similarity=0.492 Sum_probs=34.7
Q ss_pred CceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 141 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 141 ~k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
...|+||.-.. ...+...|..+..+...--..|| .++-||++|+||||.+.
T Consensus 116 ~~~~tfd~fv~-g~~n~~a~~~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 116 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCCccccccc-CCCcHHHHHHHHHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 35688988332 34566677766666554323344 48889999999999875
No 38
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=89.73 E-value=0.2 Score=58.75 Aligned_cols=50 Identities=26% Similarity=0.564 Sum_probs=35.4
Q ss_pred CceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 141 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 141 ~k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
...|+||.-.. ..++...|..+..++.. -..||. +|-||++|+||||.+.
T Consensus 99 ~~~~tFdnFv~-g~~n~~a~~~~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 99 NPDYTFENFVV-GPGNSFAYHAALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCCccccccc-CCchHHHHHHHHHHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 45699998554 35566677766555543 123665 9999999999999875
No 39
>PRK06893 DNA replication initiation factor; Validated
Probab=89.31 E-value=0.3 Score=52.03 Aligned_cols=49 Identities=14% Similarity=0.314 Sum_probs=32.9
Q ss_pred CceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceeccc
Q 002104 141 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 141 ~k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 194 (966)
...++||..+.... ..-+ ..+.+.+-.++|..++-||++|+||||.+.+
T Consensus 10 ~~~~~fd~f~~~~~-~~~~----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 10 IDDETLDNFYADNN-LLLL----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CCcccccccccCCh-HHHH----HHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 45688999886542 2211 2222333357888899999999999998753
No 40
>PRK12377 putative replication protein; Provisional
Probab=89.09 E-value=0.32 Score=53.19 Aligned_cols=49 Identities=20% Similarity=0.330 Sum_probs=36.2
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceeccc
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 194 (966)
+||.-......|..++..+..+++.+..+. ..++-||++|+||||.+.+
T Consensus 72 tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 455543344567778888788888777654 4688899999999998864
No 41
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=89.00 E-value=0.47 Score=55.47 Aligned_cols=51 Identities=29% Similarity=0.592 Sum_probs=33.3
Q ss_pred CceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 141 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 141 ~k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
...|+||. |-++.+++-.|..+..+-+.--.-|| -||-||.+|+||||-|.
T Consensus 81 ~~~ytFdn-Fv~g~~N~~A~aa~~~va~~~g~~~n-plfi~G~~GlGKTHLl~ 131 (408)
T COG0593 81 NPKYTFDN-FVVGPSNRLAYAAAKAVAENPGGAYN-PLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCchhh-eeeCCchHHHHHHHHHHHhccCCcCC-cEEEECCCCCCHHHHHH
Confidence 45799998 44455555566544333333222244 58999999999999985
No 42
>PRK08116 hypothetical protein; Validated
Probab=88.75 E-value=0.28 Score=53.93 Aligned_cols=51 Identities=18% Similarity=0.416 Sum_probs=37.1
Q ss_pred ceeecceeeCCCCChHHHHHhhHHHHHHHhc--CCcccEEeeccCCCCcceecc
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLD--GYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV~PLV~svLd--GyNvcIfAYGQTGSGKTyTM~ 193 (966)
..++||.-. .+..+...|..+...++.+.. ..+..++-||.+|+||||.+.
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred Hhcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 346677633 456677778777777777654 345669999999999999875
No 43
>PRK08084 DNA replication initiation factor; Provisional
Probab=88.35 E-value=0.34 Score=51.90 Aligned_cols=49 Identities=12% Similarity=0.436 Sum_probs=33.8
Q ss_pred CceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceeccc
Q 002104 141 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 141 ~k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 194 (966)
...|+||.-+.. .+...+..+..++. ......++-||++|+||||.+.+
T Consensus 16 ~~~~~fd~f~~~--~n~~a~~~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 16 PDDETFASFYPG--DNDSLLAALQNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CCcCCccccccC--ccHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 456788875543 56667776655543 22234789999999999998853
No 44
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.83 E-value=0.29 Score=55.23 Aligned_cols=30 Identities=30% Similarity=0.583 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 164 EPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 164 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
-|++..+++--++.|+.-|+||||||.||-
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 357777889999999999999999999984
No 45
>PRK07952 DNA replication protein DnaC; Validated
Probab=87.54 E-value=0.44 Score=51.98 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=34.5
Q ss_pred eecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceeccc
Q 002104 144 YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 194 (966)
.+||.-......|..++..+...++.+..|+ ..++-||.+|+||||.+.+
T Consensus 69 ~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 69 CSFENYRVECEGQMNALSKARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 3455533334557778877777777665543 3689999999999998754
No 46
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=87.46 E-value=3.1 Score=47.37 Aligned_cols=17 Identities=35% Similarity=0.710 Sum_probs=14.8
Q ss_pred ccEEeeccCCCCcceec
Q 002104 176 ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM 192 (966)
..|+-||++|+|||++.
T Consensus 157 ~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLA 173 (364)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999876
No 47
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=87.31 E-value=0.38 Score=56.68 Aligned_cols=49 Identities=31% Similarity=0.538 Sum_probs=33.3
Q ss_pred eeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 143 NYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 143 ~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
.|+||.-... .+++..|..+..++..--..|| .+|-||.+|+||||.|.
T Consensus 111 ~~tFdnFv~g-~~n~~A~~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVIG-SSNEQAFIAVQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccCC-CcHHHHHHHHHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 5899995543 4556677666555543212244 48999999999999874
No 48
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=86.91 E-value=0.52 Score=48.93 Aligned_cols=48 Identities=19% Similarity=0.532 Sum_probs=34.1
Q ss_pred CceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 141 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 141 ~k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
...|+||.... + .+..++..++.++. .+....|+-||++|+||||...
T Consensus 9 ~~~~~~~~~~~-~-~~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 9 PDDPTFDNFYA-G-GNAELLAALRQLAA---GKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCchhhcCcCc-C-CcHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHHH
Confidence 34578887663 2 55667766665543 4567789999999999999764
No 49
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=86.86 E-value=1.1 Score=51.70 Aligned_cols=33 Identities=33% Similarity=0.609 Sum_probs=24.3
Q ss_pred HHhhHHHHHHHhcCCccc-EEeeccCCCCcceec
Q 002104 160 FSEVEPVIKSVLDGYNAC-IFAYGQTGTGKSFTM 192 (966)
Q Consensus 160 F~eV~PLV~svLdGyNvc-IfAYGQTGSGKTyTM 192 (966)
++.+...+..++.|.-.. ++.||.||||||.|+
T Consensus 26 i~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 26 INQLASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 344555566677666544 999999999998875
No 50
>PRK05642 DNA replication initiation factor; Validated
Probab=86.62 E-value=0.5 Score=50.66 Aligned_cols=51 Identities=16% Similarity=0.347 Sum_probs=30.8
Q ss_pred CceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 141 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 141 ~k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
...|+||.-+.. .+..++..+..+....-..-...++-||.+|+||||-+.
T Consensus 13 ~~~~tfdnF~~~--~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 13 RDDATFANYYPG--ANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CCcccccccCcC--ChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence 456899986633 234444444433332111113568999999999999874
No 51
>PRK06835 DNA replication protein DnaC; Validated
Probab=86.10 E-value=0.41 Score=54.33 Aligned_cols=37 Identities=24% Similarity=0.491 Sum_probs=27.2
Q ss_pred HHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceeccc
Q 002104 157 DEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 157 edVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 194 (966)
..+++.+...|+.+-.+. -.|+-||++|+||||.+.+
T Consensus 166 ~~~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 166 EKILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 345555566777776554 5699999999999998754
No 52
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.88 E-value=0.37 Score=57.37 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=27.7
Q ss_pred hHHHHHHHhcCCcccEEeeccCCCCcceeccc
Q 002104 163 VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 163 V~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 194 (966)
....+..++..-++-|+.-|+||||||.||+.
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 34566788889999999999999999999975
No 53
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.76 E-value=0.72 Score=48.48 Aligned_cols=50 Identities=16% Similarity=0.406 Sum_probs=32.9
Q ss_pred CCceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 140 KSKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 140 k~k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
....|+||..+. .. .+.+...+..++.. .+.+..++-||++|+||||.+.
T Consensus 11 ~~~~~~~d~f~~-~~-~~~~~~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 11 PPPPPTFDNFVA-GE-NAELVARLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCChhhhccccc-CC-cHHHHHHHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 345688999773 22 23455555555442 2345679999999999999764
No 54
>PRK09087 hypothetical protein; Validated
Probab=85.69 E-value=0.5 Score=50.65 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=32.4
Q ss_pred CceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 141 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 141 ~k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
...|+||.-+..++ +..+|..+..+ ..-.+..++-||++||||||-+.
T Consensus 15 ~~~~~~~~Fi~~~~-N~~a~~~l~~~----~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 15 DPAYGRDDLLVTES-NRAAVSLVDHW----PNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCCChhceeecCc-hHHHHHHHHhc----ccCCCCeEEEECCCCCCHHHHHH
Confidence 45688998665333 45577754332 22235568999999999999885
No 55
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=84.97 E-value=0.79 Score=51.26 Aligned_cols=39 Identities=33% Similarity=0.635 Sum_probs=27.7
Q ss_pred CChHHHHHhhHHHHHHHhcC-CcccEEeeccCCCCcceec
Q 002104 154 SSQDEVFSEVEPVIKSVLDG-YNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 154 asQedVF~eV~PLV~svLdG-yNvcIfAYGQTGSGKTyTM 192 (966)
...++-++.+...+..++.| ...+++-||++|+|||+++
T Consensus 18 ~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 18 VHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 34555555555556665554 4568999999999999875
No 56
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=83.08 E-value=1 Score=49.26 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=31.9
Q ss_pred CCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceeccc
Q 002104 151 HPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 151 ~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 194 (966)
.+...+..+|..+..++..+-.|.| ++-||++|+||||-..+
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~n--l~l~G~~G~GKThLa~A 124 (254)
T COG1484 83 FQPGIDKKALEDLASLVEFFERGEN--LVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CCcchhHHHHHHHHHHHHHhccCCc--EEEECCCCCcHHHHHHH
Confidence 3445678888888888777764444 67899999999998754
No 57
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=82.85 E-value=1.2 Score=50.57 Aligned_cols=38 Identities=26% Similarity=0.477 Sum_probs=26.6
Q ss_pred ChHHHHHhhHHHHHHHhc-CCcccEEeeccCCCCcceec
Q 002104 155 SQDEVFSEVEPVIKSVLD-GYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 155 sQedVF~eV~PLV~svLd-GyNvcIfAYGQTGSGKTyTM 192 (966)
.-++-++.+...+..++. +....++-||++|+|||+++
T Consensus 34 ~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 34 HREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 345555555555555554 44567899999999999875
No 58
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=81.96 E-value=0.96 Score=44.45 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=20.6
Q ss_pred HHHHHHhcC-CcccEEeeccCCCCcceeccc
Q 002104 165 PVIKSVLDG-YNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 165 PLV~svLdG-yNvcIfAYGQTGSGKTyTM~G 194 (966)
.+++.+-.+ ...-++..++||||||++|..
T Consensus 14 ~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 14 RIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 344444433 355667778999999999974
No 59
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=81.43 E-value=1 Score=53.07 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=34.9
Q ss_pred CceeecceeeCCCCChHHHHHhhHHHHHHH--hcC--CcccEEeeccCCCCcceecc
Q 002104 141 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSV--LDG--YNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 141 ~k~F~FD~VF~p~asQedVF~eV~PLV~sv--LdG--yNvcIfAYGQTGSGKTyTM~ 193 (966)
...|+||.-.. ..+++..|..+..+.... ..| || .+|-||++|+||||.+.
T Consensus 105 ~~~~tFdnFv~-g~~N~~a~~~a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 105 DPLMTFANFLV-TPENDLPHRILQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQ 159 (445)
T ss_pred Cccccccceee-CCcHHHHHHHHHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHH
Confidence 45699998554 345666676666665433 223 44 36789999999999875
No 60
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=80.86 E-value=3.3 Score=48.33 Aligned_cols=50 Identities=20% Similarity=0.381 Sum_probs=29.1
Q ss_pred eeecceeeCCCCChHHHHHhh-HHHHH-HHhc--C--CcccEEeeccCCCCcceec
Q 002104 143 NYSFDKVFHPGSSQDEVFSEV-EPVIK-SVLD--G--YNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 143 ~F~FD~VF~p~asQedVF~eV-~PLV~-svLd--G--yNvcIfAYGQTGSGKTyTM 192 (966)
.++|+.|-+.+..-+++-+.+ .|+.. ..+. | ....|+-||++|+|||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 356666666443333443333 24332 2333 2 2456889999999999875
No 61
>PRK08939 primosomal protein DnaI; Reviewed
Probab=80.69 E-value=0.94 Score=50.91 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=33.9
Q ss_pred eecceeeCCCCChHHHHHhhHHHHHHHhcC-CcccEEeeccCCCCcceeccc
Q 002104 144 YSFDKVFHPGSSQDEVFSEVEPVIKSVLDG-YNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV~PLV~svLdG-yNvcIfAYGQTGSGKTyTM~G 194 (966)
.+||.+-.....+..++..+...+.....| ..-.++-||++|+||||-+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 456654333335666666666666665543 234699999999999998864
No 62
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=79.61 E-value=1.2 Score=40.99 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=17.9
Q ss_pred HHHhcCCcccEEeeccCCCCcceec
Q 002104 168 KSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 168 ~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
..+.......++-+|++|+|||+.+
T Consensus 12 ~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 12 EALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHhCCCCCeEEEECCCCCCHHHHH
Confidence 3333334457889999999999765
No 63
>PRK08727 hypothetical protein; Validated
Probab=79.37 E-value=1.4 Score=47.25 Aligned_cols=46 Identities=17% Similarity=0.381 Sum_probs=27.9
Q ss_pred CceeecceeeCCCCChHHHHHhhHHHHHHHhcCCc-ccEEeeccCCCCcceecc
Q 002104 141 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYN-ACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 141 ~k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyN-vcIfAYGQTGSGKTyTM~ 193 (966)
...|+||.-+...+ + ....+..+ ..|+. -.|+-||++|+||||.+.
T Consensus 13 ~~~~~f~~f~~~~~-n--~~~~~~~~----~~~~~~~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 13 PSDQRFDSYIAAPD-G--LLAQLQAL----AAGQSSDWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CCcCChhhccCCcH-H--HHHHHHHH----HhccCCCeEEEECCCCCCHHHHHH
Confidence 34578888554332 2 22222222 22332 359999999999999875
No 64
>PRK06526 transposase; Provisional
Probab=78.48 E-value=1 Score=49.39 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=17.4
Q ss_pred cCCcccEEeeccCCCCcceeccc
Q 002104 172 DGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 172 dGyNvcIfAYGQTGSGKTyTM~G 194 (966)
.+.| |+.||++|+||||...+
T Consensus 97 ~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 97 GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCce--EEEEeCCCCchHHHHHH
Confidence 3444 79999999999999875
No 65
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=78.02 E-value=0.98 Score=57.35 Aligned_cols=38 Identities=29% Similarity=0.477 Sum_probs=26.5
Q ss_pred hHHHHHhhHHHHHHHhc--CCcccEEeeccCCCCcceecc
Q 002104 156 QDEVFSEVEPVIKSVLD--GYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 156 QedVF~eV~PLV~svLd--GyNvcIfAYGQTGSGKTyTM~ 193 (966)
-++=++.+..++..++. |-+.+||-||++|+|||.|+-
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHH
Confidence 34445555566666664 445578899999999999873
No 66
>PRK08181 transposase; Validated
Probab=78.00 E-value=1.5 Score=48.54 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=17.7
Q ss_pred cCCcccEEeeccCCCCcceeccc
Q 002104 172 DGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 172 dGyNvcIfAYGQTGSGKTyTM~G 194 (966)
.|.| |+-||++|+||||-+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4555 89999999999998865
No 67
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=77.79 E-value=0.88 Score=41.51 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=14.9
Q ss_pred EEeeccCCCCcceeccc
Q 002104 178 IFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 178 IfAYGQTGSGKTyTM~G 194 (966)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57899999999999864
No 68
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=76.13 E-value=1.5 Score=48.33 Aligned_cols=43 Identities=19% Similarity=0.369 Sum_probs=28.3
Q ss_pred eecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 144 YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
-+||.+.+ |+++.+.+..++. .|....++-||++|+|||++..
T Consensus 12 ~~~~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 12 ALLEDILG----QDEVVERLSRAVD---SPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred CcHHHhcC----CHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHH
Confidence 34666664 5556555544443 3443458889999999999874
No 69
>PRK06921 hypothetical protein; Provisional
Probab=74.71 E-value=2.3 Score=46.78 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=25.1
Q ss_pred HHHHhhHHHHHHHhc---CCcccEEeeccCCCCcceeccc
Q 002104 158 EVFSEVEPVIKSVLD---GYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 158 dVF~eV~PLV~svLd---GyNvcIfAYGQTGSGKTyTM~G 194 (966)
.++..+...+..+-. +....|+-||++|+||||.+..
T Consensus 97 ~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 97 DAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 355445556665532 2345689999999999998753
No 70
>PF13245 AAA_19: Part of AAA domain
Probab=74.59 E-value=1.6 Score=39.39 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=18.1
Q ss_pred HHHHhcCCcccEEeeccCCCCcceecc
Q 002104 167 IKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 167 V~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
|..++. -+..+...|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 454555 33344558999999999874
No 71
>PRK10436 hypothetical protein; Provisional
Probab=74.14 E-value=1.5 Score=52.04 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=23.7
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
.+..++..-++.|+..|+||||||.||.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 4556667778999999999999999985
No 72
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=74.11 E-value=1.9 Score=42.21 Aligned_cols=26 Identities=27% Similarity=0.583 Sum_probs=20.6
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
++..++.|.| ++..|+||+|||+...
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 4555667777 7889999999999864
No 73
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=74.03 E-value=1.1 Score=42.20 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=12.8
Q ss_pred cccEEeeccCCCCcceec
Q 002104 175 NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM 192 (966)
..+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999865
No 74
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=73.47 E-value=1.7 Score=52.84 Aligned_cols=29 Identities=17% Similarity=0.375 Sum_probs=24.5
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceeccc
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM~G 194 (966)
.+..++..-++.|+..|+||||||.||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 55667777889999999999999999853
No 75
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=73.46 E-value=1.3 Score=40.15 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=15.6
Q ss_pred ccEEeeccCCCCcceecc
Q 002104 176 ACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM~ 193 (966)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467889999999999874
No 76
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=72.99 E-value=1.9 Score=51.49 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=24.3
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
..+..++..-++.|+..|+||||||.||.
T Consensus 232 ~~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 232 SRFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 35566777778889999999999999985
No 77
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=72.71 E-value=16 Score=42.33 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=14.8
Q ss_pred cccEEeeccCCCCcceec
Q 002104 175 NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM 192 (966)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 346899999999999754
No 78
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=72.41 E-value=19 Score=42.85 Aligned_cols=16 Identities=38% Similarity=0.742 Sum_probs=13.8
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.|+-||++|+|||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999998765
No 79
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=72.36 E-value=1.3 Score=44.03 Aligned_cols=33 Identities=15% Similarity=0.398 Sum_probs=17.6
Q ss_pred HHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 160 FSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 160 F~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
++.+..++.....|..-+++-+|.+|+|||+.+
T Consensus 9 ~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 9 IERLRDLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HHHHHHTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 334444444334666778999999999999864
No 80
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=71.57 E-value=7.6 Score=42.52 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=34.7
Q ss_pred EecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCcCccccceeEEEeccCCccc
Q 002104 272 QVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVDLGGSERV 338 (966)
Q Consensus 272 ~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~~~~~~SKL~LVDLAGSER~ 338 (966)
.+.+++++...+..+... ..+. + ..-|.-++.|.|...+. -.|+||||+|-.+.
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~---~--~~~s~~~i~l~i~~p~~-------~~ltLIDlPGl~~~ 138 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT---N--KGISPVPINLRVYSPHV-------LNLTLIDLPGITKV 138 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC---C--CcccCcceEEEEeCCCC-------CceEEEeCCCcccc
Confidence 346788888888765432 1111 1 23456688888876543 35999999998643
No 81
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=71.39 E-value=2.1 Score=48.57 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=21.1
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
.+..++.--.+.|+-.|+||||||+||.
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 4444444445779999999999999984
No 82
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=71.26 E-value=1.9 Score=44.02 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=21.6
Q ss_pred hHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 163 VEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 163 V~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
+..+...+-.|.+.+++-||+.|+|||+.|
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 344544444567889999999999999876
No 83
>PF12846 AAA_10: AAA-like domain
Probab=71.03 E-value=1.6 Score=46.49 Aligned_cols=19 Identities=32% Similarity=0.595 Sum_probs=16.1
Q ss_pred cccEEeeccCCCCcceecc
Q 002104 175 NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM~ 193 (966)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999998874
No 84
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=70.60 E-value=1.6 Score=45.84 Aligned_cols=17 Identities=47% Similarity=0.708 Sum_probs=14.1
Q ss_pred cEEeeccCCCCcceecc
Q 002104 177 CIFAYGQTGTGKSFTME 193 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM~ 193 (966)
-+...|.||||||+|+-
T Consensus 25 H~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTVK 41 (229)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 35577999999999984
No 85
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=70.03 E-value=1.7 Score=45.29 Aligned_cols=19 Identities=37% Similarity=0.609 Sum_probs=16.4
Q ss_pred cccEEeeccCCCCcceecc
Q 002104 175 NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM~ 193 (966)
++.|+-.|+||||||.++.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3678899999999999984
No 86
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=69.43 E-value=2.7 Score=44.00 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=21.4
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
..|..++...+..++..|..||||||+|.
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 34566666665566678999999999874
No 87
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=69.19 E-value=3.2 Score=44.27 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=18.6
Q ss_pred HHHhcCCcccEEeeccCCCCcceec
Q 002104 168 KSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 168 ~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
...+......++-+|++|+|||+++
T Consensus 36 ~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 36 EYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 3334444667888999999999765
No 88
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=68.17 E-value=2.8 Score=48.26 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=18.2
Q ss_pred CCcccEEeeccCCCCcceecc
Q 002104 173 GYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 173 GyNvcIfAYGQTGSGKTyTM~ 193 (966)
--.+.|+..|+||||||.||.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHH
Confidence 356889999999999999984
No 89
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=67.75 E-value=2.8 Score=48.55 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=17.1
Q ss_pred CcccEEeeccCCCCcceecc
Q 002104 174 YNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 174 yNvcIfAYGQTGSGKTyTM~ 193 (966)
.++.|+..|+||||||+||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45678899999999999984
No 90
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=67.32 E-value=3.1 Score=45.71 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=22.4
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
..+..++..-.+.|+-.|.||||||.||.
T Consensus 70 ~~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 70 EIFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 34455666566778889999999999984
No 91
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=67.00 E-value=15 Score=41.24 Aligned_cols=74 Identities=24% Similarity=0.402 Sum_probs=46.4
Q ss_pred eecceeeCCCCChHHHHHhh-HHHHHHHh---cCCc--ccEEeeccCCCCcceeccc--------------CC---CCCC
Q 002104 144 YSFDKVFHPGSSQDEVFSEV-EPVIKSVL---DGYN--ACIFAYGQTGTGKSFTMEG--------------TP---DSPG 200 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV-~PLV~svL---dGyN--vcIfAYGQTGSGKTyTM~G--------------~~---e~pG 200 (966)
.++..|=+-+..-++|-+.| -|+.+.-| =|.+ -.|+.||+.|+|||-..-. +. .--|
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylg 231 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 231 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhc
Confidence 34444545555556677666 46665544 2443 3589999999999754321 10 1136
Q ss_pred cHHHHHHHHHHHHHhcC
Q 002104 201 IVPRAIEAIFKQAMESN 217 (966)
Q Consensus 201 IIPRale~LF~~i~e~~ 217 (966)
-=||.++++|..+.+..
T Consensus 232 egprmvrdvfrlakena 248 (408)
T KOG0727|consen 232 EGPRMVRDVFRLAKENA 248 (408)
T ss_pred cCcHHHHHHHHHHhccC
Confidence 67999999999776543
No 92
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=66.47 E-value=2.5 Score=45.72 Aligned_cols=30 Identities=27% Similarity=0.550 Sum_probs=20.2
Q ss_pred hHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 163 VEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 163 V~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
+..++...+.+ .+.|+..|.||||||.+|.
T Consensus 116 ~~~~l~~~v~~-~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 116 IAEFLRSAVRG-RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp HHHHHHHCHHT-TEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhhcccc-ceEEEEECCCccccchHHH
Confidence 44444444443 4456677999999999873
No 93
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=65.49 E-value=4.5 Score=44.29 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=27.2
Q ss_pred CChHHHHHhhHHHHHHHhcC--CcccEEeeccCCCCcceecc
Q 002104 154 SSQDEVFSEVEPVIKSVLDG--YNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 154 asQedVF~eV~PLV~svLdG--yNvcIfAYGQTGSGKTyTM~ 193 (966)
..|+++.+.+..++.....+ ....++-||++|+|||+...
T Consensus 7 iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 7 IGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 34777777776666655432 22347779999999997653
No 94
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=65.37 E-value=3.3 Score=42.12 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=17.6
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceeccc
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM~G 194 (966)
.|..++..-. ..+..|+.|||||+|+..
T Consensus 9 Ai~~~~~~~~-~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 9 AIQSALSSNG-ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp HHHHHCTSSE--EEEE-STTSSHHHHHHH
T ss_pred HHHHHHcCCC-CEEEECCCCCChHHHHHH
Confidence 3455554333 456689999999988753
No 95
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=65.00 E-value=4.4 Score=45.57 Aligned_cols=34 Identities=35% Similarity=0.507 Sum_probs=27.4
Q ss_pred HHh--hHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 160 FSE--VEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 160 F~e--V~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
|++ +-++++.+.--..+.|+..|.|||||+.||-
T Consensus 110 ~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 110 FEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred HHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 444 3467778777788899999999999999984
No 96
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=64.55 E-value=4.2 Score=42.16 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=15.7
Q ss_pred ccEEeeccCCCCcceeccc
Q 002104 176 ACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM~G 194 (966)
-.++-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 4589999999999998754
No 97
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=64.45 E-value=5.1 Score=45.72 Aligned_cols=37 Identities=32% Similarity=0.312 Sum_probs=22.7
Q ss_pred HHHHHh-hHHHHHHHhcC-CcccEEeeccCCCCcceecc
Q 002104 157 DEVFSE-VEPVIKSVLDG-YNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 157 edVF~e-V~PLV~svLdG-yNvcIfAYGQTGSGKTyTM~ 193 (966)
+.++++ |-.++...+.+ .---.+-||+.|+|||.|..
T Consensus 37 e~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred hhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 344443 33333333333 33457889999999999974
No 98
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=63.22 E-value=4.5 Score=45.33 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 164 EPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 164 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
..++..++.+ ...|+-.|.||||||++|.
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 3455555553 4567889999999999873
No 99
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=62.95 E-value=2.7 Score=39.26 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=13.1
Q ss_pred EEeeccCCCCcceec
Q 002104 178 IFAYGQTGTGKSFTM 192 (966)
Q Consensus 178 IfAYGQTGSGKTyTM 192 (966)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999865
No 100
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=62.17 E-value=4.6 Score=45.85 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=20.4
Q ss_pred HHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 164 EPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 164 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
..++..++.+ ...|+-.|.||||||++|.
T Consensus 138 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 138 REAIIAAVRA-HRNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 3455656654 3556777999999997763
No 101
>PLN03025 replication factor C subunit; Provisional
Probab=61.96 E-value=4.9 Score=44.90 Aligned_cols=42 Identities=21% Similarity=0.457 Sum_probs=25.6
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
+||.|.+ |+++.+.+..++. .|.-..++-||++|+|||++..
T Consensus 11 ~l~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 11 KLDDIVG----NEDAVSRLQVIAR---DGNMPNLILSGPPGTGKTTSIL 52 (319)
T ss_pred CHHHhcC----cHHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHHH
Confidence 3555553 4555544444332 3333346679999999999875
No 102
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=61.65 E-value=19 Score=40.00 Aligned_cols=129 Identities=19% Similarity=0.274 Sum_probs=70.7
Q ss_pred eecceeeCCCCChHHHHHhhHHHHHHHhcCCcc-cEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHhcCCeeEE
Q 002104 144 YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNA-CIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAFRI 222 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV~PLV~svLdGyNv-cIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e~~~~f~V 222 (966)
..+|...+-+...+.+.+.+ ..++.|..+ .++-||..|||||.++- .|+......+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt----~~Fl~G~pannvLL~G~rGtGKSSlVk--------------all~~y~~~G----- 80 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENT----EQFLQGLPANNVLLWGARGTGKSSLVK--------------ALLNEYADQG----- 80 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHH----HHHHcCCCCcceEEecCCCCCHHHHHH--------------HHHHHHhhcC-----
Confidence 45555555444444444333 556777754 36779999999987653 3333333333
Q ss_pred EEEEEEEecceeecccCCCCCCCCCCCCCcceeeecC-CCcEEecCcEEEEe-cCHHHHHHHHHhcccccccccccCCCC
Q 002104 223 SFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP-KGGIEIDNLVTIQV-NDFNQALRLYRLGCRFRSTASTNSNRT 300 (966)
Q Consensus 223 sVS~lEIYNE~V~DLL~~~~~~~~~~~~~~L~Ired~-~ggv~V~gLtev~V-~S~eE~l~LL~~G~~nR~tasT~~N~~ 300 (966)
+.++||..+.+.||-.--. .++..+ .--+++.+|+--.- .+...+..+|.-|...| ....-...+
T Consensus 81 -LRlIev~k~~L~~l~~l~~-----------~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyAT 147 (249)
T PF05673_consen 81 -LRLIEVSKEDLGDLPELLD-----------LLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYAT 147 (249)
T ss_pred -ceEEEECHHHhccHHHHHH-----------HHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEe
Confidence 5569999888776631100 001111 11234555553222 23555666776666544 344455677
Q ss_pred CCCceeEE
Q 002104 301 SSRSHCMI 308 (966)
Q Consensus 301 SSRSH~If 308 (966)
|.|-|.|-
T Consensus 148 SNRRHLv~ 155 (249)
T PF05673_consen 148 SNRRHLVP 155 (249)
T ss_pred cchhhccc
Confidence 88888764
No 103
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=60.74 E-value=3.7 Score=44.05 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=16.0
Q ss_pred CcccEEeeccCCCCcceecc
Q 002104 174 YNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 174 yNvcIfAYGQTGSGKTyTM~ 193 (966)
.++.++..|..|||||+||.
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHH
Confidence 67788888999999999974
No 104
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=60.49 E-value=3.3 Score=38.70 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=13.7
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
+|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999764
No 105
>PF13479 AAA_24: AAA domain
Probab=60.40 E-value=3.5 Score=43.52 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=16.6
Q ss_pred cccEEeeccCCCCcceeccc
Q 002104 175 NACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM~G 194 (966)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45689999999999987643
No 106
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=59.96 E-value=5.8 Score=45.46 Aligned_cols=36 Identities=36% Similarity=0.527 Sum_probs=26.2
Q ss_pred CChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 154 SSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 154 asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
..|+.+|+.|-..+.. .....+|.-|..|+||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~~---~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN---EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHHc---cCCcEEEEEcCCCCChhHHH
Confidence 4689999886433333 34456788999999999976
No 107
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=59.78 E-value=3.3 Score=43.65 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=14.7
Q ss_pred cEEeeccCCCCcceecc
Q 002104 177 CIFAYGQTGTGKSFTME 193 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM~ 193 (966)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 46788999999999974
No 108
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=59.50 E-value=6.4 Score=38.27 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=17.7
Q ss_pred HHHhcCCcccEEeeccCCCCcceeccc
Q 002104 168 KSVLDGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 168 ~svLdGyNvcIfAYGQTGSGKTyTM~G 194 (966)
..++++. ..++..|+||||||.++..
T Consensus 18 ~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 18 EALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 3444442 3457778999999998754
No 109
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=57.99 E-value=6.7 Score=40.40 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=20.8
Q ss_pred hHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 163 VEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 163 V~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
+.+++..++.. ...+.-.|+||||||.+|.
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 34555555554 3456778999999998863
No 110
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=57.95 E-value=4.3 Score=40.69 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=18.6
Q ss_pred EEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHH
Q 002104 178 IFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQA 213 (966)
Q Consensus 178 IfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i 213 (966)
+--.|.||+||||+- ..+.+.||..-
T Consensus 56 lSfHG~tGtGKn~v~----------~liA~~ly~~G 81 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVS----------RLIAEHLYKSG 81 (127)
T ss_pred EEeecCCCCcHHHHH----------HHHHHHHHhcc
Confidence 335699999999964 45667777643
No 111
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=57.77 E-value=8.6 Score=44.96 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=16.5
Q ss_pred cccEEeeccCCCCcceecc
Q 002104 175 NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM~ 193 (966)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578899999999999973
No 112
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=57.58 E-value=5.9 Score=45.71 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=45.3
Q ss_pred hHHHHHHHhcCCcccEEeeccCCCCcceecc---c--CCCCC----------------------------CcHHHHHHHH
Q 002104 163 VEPVIKSVLDGYNACIFAYGQTGTGKSFTME---G--TPDSP----------------------------GIVPRAIEAI 209 (966)
Q Consensus 163 V~PLV~svLdGyNvcIfAYGQTGSGKTyTM~---G--~~e~p----------------------------GIIPRale~L 209 (966)
+..++..++.+. +-|+-.|.||||||+++- | ++.++ |----.+.+|
T Consensus 162 ~a~~L~~av~~r-~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~~ph~vrL~TR~~n~Eg~gevtm~dL 240 (355)
T COG4962 162 AAKFLRRAVGIR-CNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLAHPHVVRLETRPPNVEGTGEVTMRDL 240 (355)
T ss_pred HHHHHHHHHhhc-eeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhccCCCceEEEeecCCCCCCcceEEHHHH
Confidence 345566666666 778999999999999873 2 11111 2223356666
Q ss_pred HHHHHhcCCeeEEEEEEEEEecceeecccCC
Q 002104 210 FKQAMESNHAFRISFSMLEIYLGSLKDLLVT 240 (966)
Q Consensus 210 F~~i~e~~~~f~VsVS~lEIYNE~V~DLL~~ 240 (966)
.+......-+ ++=+-||+....+|||..
T Consensus 241 vkn~LRmRPD---RIiVGEVRG~Ea~dLL~A 268 (355)
T COG4962 241 VKNALRMRPD---RIIVGEVRGVEALDLLQA 268 (355)
T ss_pred HHHHhhcCcc---ceEEEEecCccHHHHHHH
Confidence 6654332222 122468999999999954
No 113
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=57.51 E-value=6.5 Score=44.86 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=20.3
Q ss_pred HHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 164 EPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 164 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
..++..++.+. ..|+-.|.||||||.+|.
T Consensus 134 ~~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 134 ASVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 34455555432 347888999999999883
No 114
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=56.21 E-value=7.9 Score=44.95 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=23.8
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceecccC
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTMEGT 195 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~ 195 (966)
..|..+|+|.+| +....||||||..+-++
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AFaLP 64 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAFALP 64 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhhhHH
Confidence 467888999996 56678999999998774
No 115
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=55.98 E-value=10 Score=42.11 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=14.7
Q ss_pred cEEeeccCCCCcceeccc
Q 002104 177 CIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM~G 194 (966)
.|.-.|+||+|||+|+..
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 566669999999999853
No 116
>PRK04195 replication factor C large subunit; Provisional
Probab=55.86 E-value=9.2 Score=45.45 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=27.6
Q ss_pred hHHHHHhhHHHHHHHhcCC-cccEEeeccCCCCcceecc
Q 002104 156 QDEVFSEVEPVIKSVLDGY-NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 156 QedVF~eV~PLV~svLdGy-NvcIfAYGQTGSGKTyTM~ 193 (966)
|+++-+.+..++.....|. .-.++-||++|+|||++..
T Consensus 19 ~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 19 NEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 4455555666677666665 5578899999999998763
No 117
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=55.67 E-value=33 Score=37.89 Aligned_cols=54 Identities=28% Similarity=0.447 Sum_probs=46.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHhh
Q 002104 434 EARDQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLEV 487 (966)
Q Consensus 434 ~~~~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeql~~ 487 (966)
.++|.|...+.++..+|+.|.+|.+.|+.|.+.|+..-+.|-.+...+...|+.
T Consensus 83 taRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~ 136 (292)
T KOG4005|consen 83 TARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELEL 136 (292)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 357888888999999999999999999999999999888887777777776664
No 118
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=55.44 E-value=7.4 Score=44.43 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=21.4
Q ss_pred hHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 163 VEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 163 V~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
+..++..++.+. ..|+..|.||||||.+|-
T Consensus 149 ~~~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 149 IKEFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 455666555443 447788999999999873
No 119
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=55.22 E-value=7.5 Score=48.85 Aligned_cols=45 Identities=18% Similarity=0.368 Sum_probs=27.3
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
+||.+++ |+.+-.....+...+-.|.-..++-||++|+|||++..
T Consensus 26 tldd~vG----Qe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 26 TLEEFVG----QDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cHHHhcC----cHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 3555543 55554432333333334545578889999999998874
No 120
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=54.55 E-value=7.4 Score=44.72 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=21.1
Q ss_pred hHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 163 VEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 163 V~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
+..++..++.+ ...|+..|.||||||++|.
T Consensus 151 ~~~~l~~~v~~-~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 151 LEAFLHACVVG-RLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHHHHc-CCeEEEECCCCccHHHHHH
Confidence 44555555542 3447888999999999884
No 121
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=54.41 E-value=13 Score=40.79 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=28.6
Q ss_pred CCCCChHHHHHhhHHHHHHHhc-C-CcccEEeeccCCCCccee
Q 002104 151 HPGSSQDEVFSEVEPVIKSVLD-G-YNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 151 ~p~asQedVF~eV~PLV~svLd-G-yNvcIfAYGQTGSGKTyT 191 (966)
+.-..|+++-...+.+++.+.. | .=..++-||+.|.|||..
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 3345599999988889988864 2 234688899999999753
No 122
>PTZ00424 helicase 45; Provisional
Probab=54.39 E-value=7 Score=44.32 Aligned_cols=26 Identities=46% Similarity=0.758 Sum_probs=20.5
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
..+..+++|.|. +..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 456778899985 46789999999764
No 123
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=54.34 E-value=7.5 Score=45.47 Aligned_cols=25 Identities=28% Similarity=0.593 Sum_probs=19.8
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..+++|.| +++.++||||||.+.
T Consensus 34 ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 34 SLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 4566778988 677889999999653
No 124
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=54.17 E-value=8.3 Score=39.30 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=18.3
Q ss_pred HHHHHhcCCcccEEeeccCCCCccee
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyT 191 (966)
.++.++.|.| ++..++||+|||.+
T Consensus 29 ~~~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 29 AIPPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHH
Confidence 3455556877 67888999999987
No 125
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=54.10 E-value=7.7 Score=42.76 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=16.7
Q ss_pred cCC-cccEEeeccCCCCcceecc
Q 002104 172 DGY-NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 172 dGy-NvcIfAYGQTGSGKTyTM~ 193 (966)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 454 3466669999999999874
No 126
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=54.00 E-value=8.1 Score=46.80 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=24.8
Q ss_pred hhHHHHHHHhcCCc--ccEEeeccCCCCcceec
Q 002104 162 EVEPVIKSVLDGYN--ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 162 eV~PLV~svLdGyN--vcIfAYGQTGSGKTyTM 192 (966)
+|+..++..+.|.. ..++.+|++|+|||.|+
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 46777887776654 46788999999999987
No 127
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=53.90 E-value=18 Score=45.12 Aligned_cols=87 Identities=22% Similarity=0.421 Sum_probs=52.3
Q ss_pred eecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecccCC---CCCCcH----HHHHHHHHHHHHh-
Q 002104 144 YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTP---DSPGIV----PRAIEAIFKQAME- 215 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~---e~pGII----PRale~LF~~i~e- 215 (966)
|....=|.|...|..-|+. +++.+-+|...- ..+|.|||||||||..-- ..|-|| ......|+..+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~---l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK---LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred ceeccCCCCChHHHHHHHH---HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Confidence 4444557888888877765 445555564222 378999999999996521 112121 1233445544432
Q ss_pred -cCCeeEEEEEEEEEeccee
Q 002104 216 -SNHAFRISFSMLEIYLGSL 234 (966)
Q Consensus 216 -~~~~f~VsVS~lEIYNE~V 234 (966)
....+.+.|||+.-|.-..
T Consensus 78 ~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 78 FPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred CCCCeEEEEeeecccCCccc
Confidence 2345888899999885443
No 128
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=53.86 E-value=4.6 Score=41.82 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=13.1
Q ss_pred cEEeeccCCCCcceecc
Q 002104 177 CIFAYGQTGTGKSFTME 193 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM~ 193 (966)
-++.+|+||||||.++.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 58999999999998874
No 129
>PRK13342 recombination factor protein RarA; Reviewed
Probab=53.81 E-value=7.2 Score=45.34 Aligned_cols=38 Identities=21% Similarity=0.424 Sum_probs=24.4
Q ss_pred hHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 156 QDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 156 QedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
|+.+.....++...+-.+.-..++-||++|+|||+...
T Consensus 17 q~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 17 QEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred cHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 55665543333333345555567779999999997653
No 130
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=52.98 E-value=12 Score=40.56 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=14.5
Q ss_pred ccEEeeccCCCCcceec
Q 002104 176 ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM 192 (966)
..++-||++|+|||++.
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45788999999999875
No 131
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=52.29 E-value=8.4 Score=47.78 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=27.9
Q ss_pred HHHHHhhHHHHHHHh-cCCcccEEeeccCCCCcceec
Q 002104 157 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 157 edVF~eV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 192 (966)
-.||.-.......++ .+.|-||+-.|.+|||||.|+
T Consensus 66 PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 66 PHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred Cccchhhhcccccccccccccceeeccccccccccch
Confidence 457766554444443 688999999999999999986
No 132
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=51.96 E-value=9.3 Score=42.88 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=26.1
Q ss_pred ChHHHHHhhHHHHHHHhc--CCcccEEeeccCCCCcceecc
Q 002104 155 SQDEVFSEVEPVIKSVLD--GYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 155 sQedVF~eV~PLV~svLd--GyNvcIfAYGQTGSGKTyTM~ 193 (966)
.|+++-+.+..++..... +....++-||++|+|||+...
T Consensus 29 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 466666666666655432 223467889999999998874
No 133
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=51.48 E-value=6.2 Score=37.81 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=13.1
Q ss_pred EEeeccCCCCcceec
Q 002104 178 IFAYGQTGTGKSFTM 192 (966)
Q Consensus 178 IfAYGQTGSGKTyTM 192 (966)
|+..|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999864
No 134
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=51.30 E-value=9.4 Score=40.99 Aligned_cols=19 Identities=37% Similarity=0.629 Sum_probs=13.6
Q ss_pred CcccEEeeccCCCCcceec
Q 002104 174 YNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 174 yNvcIfAYGQTGSGKTyTM 192 (966)
.+-.+++.|+.||||||.-
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 5568999999999999764
No 135
>PHA02653 RNA helicase NPH-II; Provisional
Probab=51.27 E-value=18 Score=45.31 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=21.0
Q ss_pred ChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCccee
Q 002104 155 SQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 155 sQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyT 191 (966)
-|.++=+. ++..++.|.+ |+..|+||||||..
T Consensus 164 ~~~~iQ~q---il~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 164 LQPDVQLK---IFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred hhHHHHHH---HHHHHHhCCC--EEEECCCCCCchhH
Confidence 34444433 4444566664 58999999999954
No 136
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=50.86 E-value=9.1 Score=44.33 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=20.8
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
..|..+++|.| +++.++||||||.+.
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 34566778887 788899999999863
No 137
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=50.57 E-value=11 Score=44.77 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=28.4
Q ss_pred ceeecceeeCCCCChHHHHHhhHHHHHHHh-----c--C--CcccEEeeccCCCCcceec
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVL-----D--G--YNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV~PLV~svL-----d--G--yNvcIfAYGQTGSGKTyTM 192 (966)
...+||.|.+.+...++ +..++..+- . | ..-.|+-||++|+|||+..
T Consensus 50 ~~~~~~di~g~~~~k~~----l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEE----LMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCHHHhCCHHHHHHH----HHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence 45778888775433333 333333211 1 2 2235889999999999876
No 138
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=50.48 E-value=8.6 Score=45.28 Aligned_cols=43 Identities=30% Similarity=0.507 Sum_probs=31.7
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCccee
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyT 191 (966)
+||.|++ |+.+...-.|+=.-+-.|.-...+-||+.|+|||..
T Consensus 22 ~lde~vG----Q~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 22 SLDEVVG----QEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred CHHHhcC----hHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 4555554 777776655555555667778899999999999863
No 139
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=50.39 E-value=5.4 Score=37.62 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=19.2
Q ss_pred EEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHH
Q 002104 178 IFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQA 213 (966)
Q Consensus 178 IfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i 213 (966)
|+-||++|.|||+.+. ..+.+|.+.+
T Consensus 1 I~i~G~~G~GKS~l~~----------~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK----------ELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHH----------HHHHHHHHHh
Confidence 5789999999998763 4556666554
No 140
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=50.19 E-value=32 Score=38.06 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHhhh
Q 002104 442 SMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLEVS 488 (966)
Q Consensus 442 ~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeql~~~ 488 (966)
....++++..+||+|+.....++..|+.+++.|+.++..+.|.+.-.
T Consensus 87 QRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 87 QRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999987653
No 141
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=50.18 E-value=10 Score=49.84 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCcccEEeeccCCCCcceeccc
Q 002104 164 EPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 164 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 194 (966)
..++..+-+|...+++ ..+||||||+||.+
T Consensus 423 ~ai~~a~~~g~r~~Ll-~maTGSGKT~tai~ 452 (1123)
T PRK11448 423 QAVEKAIVEGQREILL-AMATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHhccCCeEE-EeCCCCCHHHHHHH
Confidence 3444555567665444 48999999999875
No 142
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=49.96 E-value=11 Score=46.68 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=21.9
Q ss_pred hHHHHHHHhc-----CCcccEEeeccCCCCcceeccc
Q 002104 163 VEPVIKSVLD-----GYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 163 V~PLV~svLd-----GyNvcIfAYGQTGSGKTyTM~G 194 (966)
|..++.++.. |.+..|+.. .||||||+||..
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 5667777765 345555444 899999999964
No 143
>PRK10865 protein disaggregation chaperone; Provisional
Probab=49.63 E-value=14 Score=47.34 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=29.5
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCCc------ccEEeeccCCCCcceec
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYN------ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGyN------vcIfAYGQTGSGKTyTM 192 (966)
-+.+|++ |...-..|...|..+..|.. +.++-+|++|+|||++.
T Consensus 566 l~~~viG----Q~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 566 LHHRVIG----QNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred hCCeEeC----CHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 3567776 55555555555555544432 57888899999999965
No 144
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=49.49 E-value=7 Score=36.31 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=12.9
Q ss_pred EEeeccCCCCcceec
Q 002104 178 IFAYGQTGTGKSFTM 192 (966)
Q Consensus 178 IfAYGQTGSGKTyTM 192 (966)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999865
No 145
>PRK06547 hypothetical protein; Provisional
Probab=49.31 E-value=12 Score=38.68 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=19.8
Q ss_pred HHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 164 EPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 164 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
+.++..+..+.---|.-+|.+|||||+.-
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 34455555555556677799999999764
No 146
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=49.19 E-value=46 Score=28.96 Aligned_cols=40 Identities=23% Similarity=0.508 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002104 437 DQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTR 476 (966)
Q Consensus 437 ~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~ 476 (966)
..+...+..|+.++..|+.++..|+.++..|+..+..|..
T Consensus 22 ~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 22 QRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556777777777777777777777777777666543
No 147
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=49.15 E-value=11 Score=47.79 Aligned_cols=35 Identities=37% Similarity=0.741 Sum_probs=24.4
Q ss_pred cccEEeeccCCCCcceec--------ccCC--CCCCcH----HHHHHHH
Q 002104 175 NACIFAYGQTGTGKSFTM--------EGTP--DSPGIV----PRAIEAI 209 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM--------~G~~--e~pGII----PRale~L 209 (966)
|-.++.+|+||||||+-+ ||.. .++|+| ||-+..|
T Consensus 271 n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAai 319 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAI 319 (1172)
T ss_pred CCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHH
Confidence 556788899999999887 3443 347776 5555544
No 148
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=49.14 E-value=6.2 Score=38.05 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=13.1
Q ss_pred EEeeccCCCCcceec
Q 002104 178 IFAYGQTGTGKSFTM 192 (966)
Q Consensus 178 IfAYGQTGSGKTyTM 192 (966)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999998765
No 149
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=47.98 E-value=10 Score=43.82 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=19.9
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
..+..++.|.| |++-++||||||.+.
T Consensus 37 ~aip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 37 LALPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHHhCCCc--EEEECCCCchHHHHH
Confidence 35566789988 466779999999863
No 150
>PRK09183 transposase/IS protein; Provisional
Probab=47.94 E-value=10 Score=41.63 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=16.3
Q ss_pred cCCcccEEeeccCCCCcceeccc
Q 002104 172 DGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 172 dGyNvcIfAYGQTGSGKTyTM~G 194 (966)
.|.| |+-+|++|+||||.+.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHH
Confidence 4554 56799999999998753
No 151
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=47.79 E-value=33 Score=38.07 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHhh
Q 002104 442 SMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLEV 487 (966)
Q Consensus 442 ~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeql~~ 487 (966)
...+|++++..|+.|+.+||.+|+++..+|+++.+.-..+..+|+.
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999988877777777764
No 152
>PRK13764 ATPase; Provisional
Probab=46.49 E-value=9.9 Score=46.87 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.6
Q ss_pred CcccEEeeccCCCCcceecc
Q 002104 174 YNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 174 yNvcIfAYGQTGSGKTyTM~ 193 (966)
....|+..|+||||||+++.
T Consensus 256 ~~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 34458999999999999984
No 153
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=46.36 E-value=11 Score=41.09 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=16.3
Q ss_pred cCCcccEEeeccCCCCcceec
Q 002104 172 DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 172 dGyNvcIfAYGQTGSGKTyTM 192 (966)
.|...-++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445788999999999776
No 154
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=46.11 E-value=12 Score=43.88 Aligned_cols=26 Identities=42% Similarity=0.650 Sum_probs=20.9
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
..|..+++|.| |++..+||||||.+.
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 35667788988 678889999999874
No 155
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=45.06 E-value=1e+02 Score=27.16 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHH
Q 002104 442 SMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQE 483 (966)
Q Consensus 442 ~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qe 483 (966)
....+++++..++.++..++.+++.|+.+++.++......++
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~ 59 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEK 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 345666777778888888888888888888887554444433
No 156
>PRK10536 hypothetical protein; Provisional
Probab=44.86 E-value=11 Score=41.92 Aligned_cols=41 Identities=20% Similarity=0.380 Sum_probs=27.1
Q ss_pred eeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 143 NYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 143 ~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.|.|-.|-+-+..|..... .+.+ +.-|+..|++||||||..
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~-------al~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK-------AIES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred hcCCccccCCCHHHHHHHH-------HHhc--CCeEEEECCCCCCHHHHH
Confidence 3555566665656655443 2233 348899999999999875
No 157
>smart00338 BRLZ basic region leucin zipper.
Probab=44.07 E-value=66 Score=28.04 Aligned_cols=39 Identities=33% Similarity=0.616 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002104 437 DQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALT 475 (966)
Q Consensus 437 ~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~ 475 (966)
..+...+..|+.++..|+.++..|+.++..|+..+..+.
T Consensus 22 ~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 22 ERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666666666666666666666555543
No 158
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.97 E-value=15 Score=42.03 Aligned_cols=41 Identities=17% Similarity=0.336 Sum_probs=25.3
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcC-CcccEEeeccCCCCcceec
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDG-YNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdG-yNvcIfAYGQTGSGKTyTM 192 (966)
+||.|.+ |+.+-+.+. ..+-.| ..-+++-||+.|+|||++.
T Consensus 14 ~~~~iiG----q~~~~~~l~---~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDIIG----QKHIVTAIS---NGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhccC----hHHHHHHHH---HHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 4555553 555544433 333333 3446789999999999865
No 159
>PHA00729 NTP-binding motif containing protein
Probab=43.59 E-value=16 Score=39.89 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=20.7
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
-++..+..|-=..|+.+|.+|+||||...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 34555544333579999999999998654
No 160
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=43.52 E-value=9.3 Score=39.74 Aligned_cols=19 Identities=37% Similarity=0.412 Sum_probs=14.3
Q ss_pred CcccEEeeccCCCCcceec
Q 002104 174 YNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 174 yNvcIfAYGQTGSGKTyTM 192 (966)
....||..||.|||||+.+
T Consensus 14 ~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp S-EEEEEES-TTSTTHHHH
T ss_pred CCEEEEEeCCCCCCHHHHH
Confidence 3467899999999998765
No 161
>CHL00176 ftsH cell division protein; Validated
Probab=43.45 E-value=14 Score=45.87 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=27.5
Q ss_pred eeecceeeCCCCChHHHHHhhHHHHHHHhcC---------CcccEEeeccCCCCcceec
Q 002104 143 NYSFDKVFHPGSSQDEVFSEVEPVIKSVLDG---------YNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 143 ~F~FD~VF~p~asQedVF~eV~PLV~svLdG---------yNvcIfAYGQTGSGKTyTM 192 (966)
.++||.|.+. +++-+++..++..+-++ ....|+-||++|+|||+..
T Consensus 179 ~~~f~dv~G~----~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 179 GITFRDIAGI----EEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CCCHHhccCh----HHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 4566666654 34444444444332221 1235899999999999876
No 162
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.97 E-value=68 Score=29.48 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=40.2
Q ss_pred hHHHHHhhhhhhhhhhhhHHH--HHHHHHhcCCCcccccccccccchhhcccCCccchHHHHHHHHHHHHHHH
Q 002104 13 LGETIHSLLGLKAHLTSSWVK--SVCDIVKNLPSTDIKGKKLETQCSEIKEIDSGPTISGIKDELATLSACIN 83 (966)
Q Consensus 13 ~~~~l~~l~~~~~~~~~~~~~--s~~~~~~~l~~~~~~~~k~~~~~~~~~~~~~~~~i~~l~~El~~l~~~~~ 83 (966)
-.|.|+.|.+.+||.++.+.+ ++.|.|+.. +......+..+++.|+++--.|..++.
T Consensus 5 fr~~is~Lk~~dahF~rLfd~hn~LDd~I~~~--------------E~n~~~~s~~ev~~LKKqkL~LKDEi~ 63 (72)
T COG2841 5 FRDLISKLKANDAHFARLFDKHNELDDRIKRA--------------EGNRQPGSDAEVSNLKKQKLQLKDEIA 63 (72)
T ss_pred HHHHHHHHhccchHHHHHHHHHhHHHHHHHHH--------------hcCCCCCcHHHHHHHHHHHHHhHHHHH
Confidence 358899999999999999988 788888776 222223344467777776666555443
No 163
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=42.67 E-value=19 Score=44.99 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=27.3
Q ss_pred HHHHHhhHHHHHHHh-cCCcccEEeeccCCCCcceec
Q 002104 157 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 157 edVF~eV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 192 (966)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 456765544444443 689999999999999999987
No 164
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=42.50 E-value=20 Score=44.79 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=28.1
Q ss_pred HHHHHhhHHHHHHHh-cCCcccEEeeccCCCCcceec
Q 002104 157 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 157 edVF~eV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 192 (966)
-.||.-......+++ .|.|-||+.-|.+|||||.|.
T Consensus 73 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 73 PHVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 357766554555554 589999999999999999986
No 165
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=41.93 E-value=20 Score=44.82 Aligned_cols=35 Identities=26% Similarity=0.557 Sum_probs=26.4
Q ss_pred HHHHhhHHHHHHHh-cCCcccEEeeccCCCCcceec
Q 002104 158 EVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 158 dVF~eV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 192 (966)
.||.-......+++ .|.|-||+.-|.+|||||.|.
T Consensus 70 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 70 HVFAIADAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 46665443344443 689999999999999999987
No 166
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=41.87 E-value=21 Score=44.70 Aligned_cols=35 Identities=20% Similarity=0.513 Sum_probs=27.1
Q ss_pred HHHHhhHHHHHHHh-cCCcccEEeeccCCCCcceec
Q 002104 158 EVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 158 dVF~eV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 192 (966)
.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 68 HIYALADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 46765544444444 689999999999999999987
No 167
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.81 E-value=15 Score=44.35 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=27.0
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
+||.|.+ |+.+...+...+.+ ......++-||+.|+|||.+.
T Consensus 12 ~~~dvvG----q~~v~~~L~~~i~~--~~l~ha~Lf~GppGtGKTTlA 53 (504)
T PRK14963 12 TFDEVVG----QEHVKEVLLAALRQ--GRLGHAYLFSGPRGVGKTTTA 53 (504)
T ss_pred CHHHhcC----hHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHH
Confidence 4666654 66666555544443 112334699999999999876
No 168
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=41.62 E-value=20 Score=44.78 Aligned_cols=36 Identities=28% Similarity=0.475 Sum_probs=28.2
Q ss_pred HHHHHhhHHHHHHHh-cCCcccEEeeccCCCCcceec
Q 002104 157 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 157 edVF~eV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 192 (966)
-.||.-......+++ .|.|-||+.-|.+|||||.+.
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 67 PHVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 357765555555554 589999999999999999986
No 169
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=41.49 E-value=22 Score=44.45 Aligned_cols=36 Identities=22% Similarity=0.479 Sum_probs=27.3
Q ss_pred HHHHHhhHHHHHHHh-cCCcccEEeeccCCCCcceec
Q 002104 157 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 157 edVF~eV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 192 (966)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 67 PHIFAISDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 346765444444444 689999999999999999987
No 170
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=41.47 E-value=21 Score=44.78 Aligned_cols=36 Identities=25% Similarity=0.501 Sum_probs=26.9
Q ss_pred HHHHHhhHHHHHHHh-cCCcccEEeeccCCCCcceec
Q 002104 157 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 157 edVF~eV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 192 (966)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 75 PHiy~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 75 PHIFAIADVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 346665444444433 689999999999999999987
No 171
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=41.29 E-value=22 Score=44.55 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=27.8
Q ss_pred HHHHHhhHHHHHHHh-cCCcccEEeeccCCCCcceec
Q 002104 157 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 157 edVF~eV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 192 (966)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 68 PHLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 347765544444444 699999999999999999987
No 172
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=40.90 E-value=10 Score=39.10 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=14.3
Q ss_pred ccEEeeccCCCCcceec
Q 002104 176 ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM 192 (966)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999854
No 173
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.67 E-value=1.2e+02 Score=34.25 Aligned_cols=17 Identities=35% Similarity=0.706 Sum_probs=13.8
Q ss_pred cccEEeeccCCCCccee
Q 002104 175 NACIFAYGQTGTGKSFT 191 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyT 191 (966)
--.++-||+.|+|||..
T Consensus 181 PKGvlLygppgtGktLl 197 (404)
T KOG0728|consen 181 PKGVLLYGPPGTGKTLL 197 (404)
T ss_pred CcceEEecCCCCchhHH
Confidence 44689999999999843
No 174
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.61 E-value=18 Score=42.84 Aligned_cols=26 Identities=42% Similarity=0.535 Sum_probs=20.0
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
..|..++.|.+ +++..+||||||.+.
T Consensus 18 ~ai~~~l~g~d--vlv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRD--CFVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCC--EEEEcCCCCcHhHHH
Confidence 35677888997 466679999999764
No 175
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=40.38 E-value=11 Score=43.83 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=16.1
Q ss_pred cccEEeeccCCCCcceecc
Q 002104 175 NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM~ 193 (966)
...|.-+|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4567789999999999974
No 176
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=40.00 E-value=22 Score=41.99 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=14.9
Q ss_pred ccEEeeccCCCCcceecc
Q 002104 176 ACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM~ 193 (966)
..|+-.|+||+|||+|+.
T Consensus 222 ~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLA 239 (424)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 366677999999999975
No 177
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=39.96 E-value=27 Score=41.55 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=16.1
Q ss_pred cccEEeeccCCCCcceecc
Q 002104 175 NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM~ 193 (966)
...|+-+|.+|+|||+|..
T Consensus 95 p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4578889999999999973
No 178
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=39.82 E-value=18 Score=43.50 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=29.9
Q ss_pred eeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCccee
Q 002104 143 NYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 143 ~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyT 191 (966)
.+.||.+.+.+..=..+.+.+. .+ ...+..|+-+|.+||||++.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~----~~-a~~~~pvli~Ge~GtGK~~l 235 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQAR----VV-ARSNSTVLLRGESGTGKELI 235 (534)
T ss_pred cCccCceEECCHHHHHHHHHHH----HH-hCcCCCEEEECCCCccHHHH
Confidence 3678888886554444444333 22 25688899999999999753
No 179
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=39.74 E-value=26 Score=44.46 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=26.3
Q ss_pred hHHHHHhhHHHHHHHhcCC------cccEEeeccCCCCcceec
Q 002104 156 QDEVFSEVEPVIKSVLDGY------NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 156 QedVF~eV~PLV~svLdGy------NvcIfAYGQTGSGKTyTM 192 (966)
|++.-..+...|.....|. .+.++-+|+||+|||++.
T Consensus 463 Q~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 463 QDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHH
Confidence 5566555555555555554 357899999999999875
No 180
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=39.62 E-value=23 Score=42.07 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=15.8
Q ss_pred ccEEeeccCCCCcceecc
Q 002104 176 ACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM~ 193 (966)
..|+-.|++|+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 568889999999999974
No 181
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=39.36 E-value=21 Score=41.81 Aligned_cols=61 Identities=26% Similarity=0.450 Sum_probs=36.7
Q ss_pred HHHHHhh-HHHHHH-Hh--cCCc--ccEEeeccCCCCcceecc--------------cCC---CCCCcHHHHHHHHHHHH
Q 002104 157 DEVFSEV-EPVIKS-VL--DGYN--ACIFAYGQTGTGKSFTME--------------GTP---DSPGIVPRAIEAIFKQA 213 (966)
Q Consensus 157 edVF~eV-~PLV~s-vL--dGyN--vcIfAYGQTGSGKTyTM~--------------G~~---e~pGIIPRale~LF~~i 213 (966)
++|.+.| -||.+. .+ =|.. --|+-||+.|+|||-.-- |+. .--|==+|.+++||..+
T Consensus 161 ~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lA 240 (406)
T COG1222 161 QEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELA 240 (406)
T ss_pred HHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHH
Confidence 4555544 344432 22 2443 358999999999985331 110 11255589999999987
Q ss_pred HhcC
Q 002104 214 MESN 217 (966)
Q Consensus 214 ~e~~ 217 (966)
.+..
T Consensus 241 reka 244 (406)
T COG1222 241 REKA 244 (406)
T ss_pred hhcC
Confidence 6543
No 182
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=39.34 E-value=11 Score=35.90 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=13.3
Q ss_pred EEeeccCCCCcceecc
Q 002104 178 IFAYGQTGTGKSFTME 193 (966)
Q Consensus 178 IfAYGQTGSGKTyTM~ 193 (966)
++-+|.+|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 5679999999998763
No 183
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=39.28 E-value=12 Score=42.21 Aligned_cols=18 Identities=33% Similarity=0.643 Sum_probs=14.6
Q ss_pred cccEEeeccCCCCcceec
Q 002104 175 NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM 192 (966)
--.|+-||++|+|||++-
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 346889999999998763
No 184
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=38.98 E-value=19 Score=45.85 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=21.1
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..+.+|.|+.|.| +||||||-+-
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH
Confidence 556778999998887 9999999774
No 185
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=38.90 E-value=28 Score=40.62 Aligned_cols=47 Identities=30% Similarity=0.503 Sum_probs=29.2
Q ss_pred ceee-cc-eeeCCCCChHHHHHhhHHHHHHHhcC---CcccEEeeccCCCCcceec
Q 002104 142 KNYS-FD-KVFHPGSSQDEVFSEVEPVIKSVLDG---YNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 142 k~F~-FD-~VF~p~asQedVF~eV~PLV~svLdG---yNvcIfAYGQTGSGKTyTM 192 (966)
+.|. || .||+ +++.-..+...+.+...| .+-.+.-.|++|||||...
T Consensus 44 ~~y~~F~~~~~G----~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla 95 (361)
T smart00763 44 KRYRFFDHDFFG----MEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred eeccccchhccC----cHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 3444 45 6777 455555543444454454 3466788999999998643
No 186
>PF05729 NACHT: NACHT domain
Probab=38.60 E-value=13 Score=35.99 Aligned_cols=16 Identities=31% Similarity=0.657 Sum_probs=13.8
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.++-+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 3678999999999876
No 187
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=38.55 E-value=23 Score=44.56 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=26.8
Q ss_pred HHHHhhHHHHHHHh-cCCcccEEeeccCCCCcceec
Q 002104 158 EVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 158 dVF~eV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 192 (966)
.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 73 HVFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cHHHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 46765444444443 689999999999999999987
No 188
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=38.46 E-value=18 Score=44.83 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=20.0
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.|..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4566778877 688889999999874
No 189
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=38.22 E-value=25 Score=44.08 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=26.9
Q ss_pred HHHHhhHHHHHHHh-cCCcccEEeeccCCCCcceec
Q 002104 158 EVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 158 dVF~eV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 192 (966)
.||.-.......++ .|.|-||+.-|.+|||||.+.
T Consensus 68 HifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 68 HIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 46665444444444 799999999999999999986
No 190
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=38.09 E-value=12 Score=43.83 Aligned_cols=37 Identities=19% Similarity=0.526 Sum_probs=25.8
Q ss_pred cEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEec
Q 002104 177 CIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYL 231 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e~~~~f~VsVS~lEIYN 231 (966)
.|+-||.+||||||++ +.+|+.. ..-.|++.++|-|.
T Consensus 32 ~~~iyG~sgTGKT~~~--------------r~~l~~~----n~~~vw~n~~ecft 68 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLV--------------RQLLRKL----NLENVWLNCVECFT 68 (438)
T ss_pred eEEEeccCCCchhHHH--------------HHHHhhc----CCcceeeehHHhcc
Confidence 3689999999999975 3455433 22357777788774
No 191
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=38.00 E-value=21 Score=43.20 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=26.1
Q ss_pred eecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCccee
Q 002104 144 YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyT 191 (966)
-+|+.+++.+ ..- +.+...+..+....|+-||++|+|||+.
T Consensus 62 ~~f~~iiGqs----~~i---~~l~~al~~~~~~~vLi~Ge~GtGKt~l 102 (531)
T TIGR02902 62 KSFDEIIGQE----EGI---KALKAALCGPNPQHVIIYGPPGVGKTAA 102 (531)
T ss_pred CCHHHeeCcH----HHH---HHHHHHHhCCCCceEEEECCCCCCHHHH
Confidence 3466666643 332 3333334556667788899999999863
No 192
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=37.79 E-value=21 Score=40.12 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=22.3
Q ss_pred hHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 163 VEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 163 V~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
+.+++..++.+. ..|+-.|.||||||..|.
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 566777777654 456777999999999763
No 193
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=37.75 E-value=20 Score=42.99 Aligned_cols=36 Identities=6% Similarity=0.193 Sum_probs=23.8
Q ss_pred cCCCcceeEEEecCCCCCCHHHHHHHHHHHHH--hhhcccCc
Q 002104 390 LGEDSKTLMLVHVSPKEDDLCETICSLNFATR--VKSVHLGH 429 (966)
Q Consensus 390 LGGNSKTlMIa~ISPs~~~~eETLsTLrFAsR--aK~I~l~~ 429 (966)
+.-..+..+|++.+..... +..|.+|-| ..-|.+.+
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~AlrRRF~fi~i~p 357 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYALRRRFSFIDIEP 357 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHHHhhhheEEecC
Confidence 4556889999999988754 445666544 44455544
No 194
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=37.60 E-value=26 Score=44.04 Aligned_cols=36 Identities=28% Similarity=0.485 Sum_probs=27.4
Q ss_pred HHHHHhhHHHHHHHh-cCCcccEEeeccCCCCcceec
Q 002104 157 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 157 edVF~eV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 192 (966)
-.||.-......+++ .|.|-||+.-|.+|||||.|.
T Consensus 72 PHiyaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFAIADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 457765444444444 699999999999999999986
No 195
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=37.37 E-value=14 Score=42.62 Aligned_cols=45 Identities=29% Similarity=0.431 Sum_probs=31.3
Q ss_pred CceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 141 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 141 ~k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
...|.|+.|-+ |+++= ..++..+.+..-+.|+-+|.+|||||+.+
T Consensus 11 ~~~~pf~~ivG----q~~~k---~al~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 11 RPVFPFTAIVG----QEEMK---LALILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCCCHHHHhC----hHHHH---HHHHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 34788888877 44432 34555555544456889999999999876
No 196
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=37.36 E-value=1.3e+02 Score=29.12 Aligned_cols=42 Identities=7% Similarity=0.230 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHH
Q 002104 442 SMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQE 483 (966)
Q Consensus 442 ~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qe 483 (966)
...++++++..++.++..++.+.+.|+.+++.|+....-+++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe 69 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEE 69 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHH
Confidence 456677777778888888888888888888877664333333
No 197
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=37.29 E-value=24 Score=41.71 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=16.0
Q ss_pred cccEEeeccCCCCcceecc
Q 002104 175 NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM~ 193 (966)
..-|.-.|+||.|||+|+-
T Consensus 203 ~~vi~LVGPTGVGKTTTlA 221 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLA 221 (407)
T ss_pred CcEEEEECCCCCcHHHHHH
Confidence 5667778999999999974
No 198
>PRK14974 cell division protein FtsY; Provisional
Probab=37.20 E-value=29 Score=39.92 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=16.4
Q ss_pred cccEEeeccCCCCcceecc
Q 002104 175 NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM~ 193 (966)
...|.-.|.+|+|||.|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4678899999999999874
No 199
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.00 E-value=19 Score=44.72 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=25.2
Q ss_pred hHHHHHhhHHHHHHHhcCCc--ccEEeeccCCCCcceecc
Q 002104 156 QDEVFSEVEPVIKSVLDGYN--ACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 156 QedVF~eV~PLV~svLdGyN--vcIfAYGQTGSGKTyTM~ 193 (966)
|......|..++..+.-+.. -.++-||++|+|||.++.
T Consensus 89 ~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 89 HKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIK 128 (637)
T ss_pred cHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHH
Confidence 45555555555555543331 248889999999999875
No 200
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=36.86 E-value=19 Score=44.70 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.3
Q ss_pred cEEeeccCCCCcceeccc
Q 002104 177 CIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM~G 194 (966)
.++..|++|||||||+..
T Consensus 175 ~~lI~GpPGTGKT~t~~~ 192 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVE 192 (637)
T ss_pred eEEEEcCCCCCHHHHHHH
Confidence 467899999999999853
No 201
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=36.79 E-value=17 Score=42.77 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=20.3
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
..+..+++|.|+.+ ..+||||||.+.
T Consensus 116 ~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 46777889998654 559999999764
No 202
>PRK06696 uridine kinase; Validated
Probab=36.60 E-value=30 Score=36.67 Aligned_cols=35 Identities=17% Similarity=0.108 Sum_probs=22.0
Q ss_pred HHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 158 EVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 158 dVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
++.+++...|.+.-.+....|.-.|.+|||||+.-
T Consensus 5 ~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 5 QLIKELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 34444433333333455667778899999998754
No 203
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.35 E-value=23 Score=42.40 Aligned_cols=41 Identities=27% Similarity=0.366 Sum_probs=25.3
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCCc-ccEEeeccCCCCcceec
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYN-ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGyN-vcIfAYGQTGSGKTyTM 192 (966)
+||.|.+ |+.+ ++.+-..+-.|.- ..++-||+.|+|||++.
T Consensus 12 ~~~divG----q~~i---~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 12 TFSEVVG----QDHV---KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CHHHccC----cHHH---HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 4666666 4444 2233333334443 35789999999999876
No 204
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=36.09 E-value=31 Score=39.21 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=14.9
Q ss_pred ccEEeeccCCCCcceecc
Q 002104 176 ACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM~ 193 (966)
..|.-.|++|+|||.|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 466677999999999974
No 205
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=36.04 E-value=12 Score=44.88 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=20.1
Q ss_pred HHHHhcCCcccEEeeccCCCCcceeccc
Q 002104 167 IKSVLDGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 167 V~svLdGyNvcIfAYGQTGSGKTyTM~G 194 (966)
|..+.+|.+. +|++|||||||+...+
T Consensus 105 ip~i~~Grdl--~acAqTGsGKT~aFLi 130 (482)
T KOG0335|consen 105 IPIISGGRDL--MACAQTGSGKTAAFLI 130 (482)
T ss_pred cceeecCCce--EEEccCCCcchHHHHH
Confidence 4445566664 9999999999998765
No 206
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=35.92 E-value=96 Score=28.37 Aligned_cols=41 Identities=27% Similarity=0.381 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH
Q 002104 444 KNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQ 484 (966)
Q Consensus 444 ~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeq 484 (966)
..|+.++.+|++++..+..+.+.|+...+.+..+...+++.
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443333333
No 207
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=35.91 E-value=17 Score=40.25 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=20.0
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
-+++..+.. +--++-+|++|+|||.++.
T Consensus 24 ~ll~~l~~~-~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 24 YLLDLLLSN-GRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp HHHHHHHHC-TEEEEEESSTTSSHHHHHH
T ss_pred HHHHHHHHc-CCcEEEECCCCCchhHHHH
Confidence 455555543 5567899999999987663
No 208
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=35.58 E-value=22 Score=43.46 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=20.7
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
..|..+++|.| |++.++||||||.+.
T Consensus 38 ~~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 38 LTLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 35667889998 566889999999764
No 209
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=35.16 E-value=32 Score=38.20 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=14.4
Q ss_pred ccEEeeccCCCCcceecc
Q 002104 176 ACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM~ 193 (966)
.+|...|++|+|||.|..
T Consensus 73 ~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIA 90 (272)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 456566999999999974
No 210
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=34.89 E-value=27 Score=40.99 Aligned_cols=17 Identities=29% Similarity=0.647 Sum_probs=15.3
Q ss_pred ccEEeeccCCCCcceec
Q 002104 176 ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM 192 (966)
.-++.+|+||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 55899999999999987
No 211
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=34.58 E-value=35 Score=43.85 Aligned_cols=42 Identities=24% Similarity=0.456 Sum_probs=28.1
Q ss_pred ceeeCCCCChHHHHHhhHHHHHHHhcCCc------ccEEeeccCCCCcceec
Q 002104 147 DKVFHPGSSQDEVFSEVEPVIKSVLDGYN------ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 147 D~VF~p~asQedVF~eV~PLV~svLdGyN------vcIfAYGQTGSGKTyTM 192 (966)
.+|++ |++.-+.|...|..+..|.+ +.++-.|+||+|||++-
T Consensus 566 ~~v~G----Q~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 566 ERVIG----QDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETA 613 (852)
T ss_pred CeEcC----hHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHH
Confidence 35665 55555555555555545543 46889999999999875
No 212
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=34.49 E-value=28 Score=41.88 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=20.2
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
..+..++.|.| +++..+||||||.+.
T Consensus 150 ~aip~il~g~d--viv~ApTGSGKTlay 175 (518)
T PLN00206 150 QAIPAALSGRS--LLVSADTGSGKTASF 175 (518)
T ss_pred HHHHHHhcCCC--EEEEecCCCCccHHH
Confidence 34667788987 577789999999764
No 213
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=34.44 E-value=20 Score=37.07 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=18.3
Q ss_pred HHHhcCC---cccEEeeccCCCCcceec
Q 002104 168 KSVLDGY---NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 168 ~svLdGy---NvcIfAYGQTGSGKTyTM 192 (966)
+.++.|- ...+.-||.+|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3445444 567899999999998653
No 214
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=33.91 E-value=26 Score=40.18 Aligned_cols=30 Identities=20% Similarity=0.454 Sum_probs=22.9
Q ss_pred hHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 163 VEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 163 V~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
+..++..++.+. ..|+-.|.||||||.+|.
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 456666666654 688899999999988763
No 215
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=33.88 E-value=28 Score=44.54 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=22.4
Q ss_pred HHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 159 VFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 159 VF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
||.....+++.+-++. .|+..|+||||||..+
T Consensus 6 i~~~~~~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 6 VAAVLPELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 4444455666665543 4778999999999876
No 216
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=33.86 E-value=18 Score=41.83 Aligned_cols=17 Identities=35% Similarity=0.651 Sum_probs=13.9
Q ss_pred cccEEeeccCCCCccee
Q 002104 175 NACIFAYGQTGTGKSFT 191 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyT 191 (966)
.+-|+..|+||||||+.
T Consensus 97 KSNILLiGPTGsGKTlL 113 (408)
T COG1219 97 KSNILLIGPTGSGKTLL 113 (408)
T ss_pred eccEEEECCCCCcHHHH
Confidence 34588999999999963
No 217
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=33.52 E-value=23 Score=42.73 Aligned_cols=45 Identities=20% Similarity=0.370 Sum_probs=30.3
Q ss_pred ceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCccee
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyT 191 (966)
..+.||.+++.+..-..+.+.++.+ ...+.-|+-+|.+||||++.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~-----A~~~~pvlI~GE~GtGK~~l 243 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKL-----AMLDAPLLITGDTGTGKDLL 243 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHH-----hCCCCCEEEECCCCccHHHH
Confidence 4578999888654334444333222 33577899999999999654
No 218
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=33.47 E-value=17 Score=35.56 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=12.5
Q ss_pred EEeeccCCCCcceec
Q 002104 178 IFAYGQTGTGKSFTM 192 (966)
Q Consensus 178 IfAYGQTGSGKTyTM 192 (966)
|+-.|.+|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998753
No 219
>PRK00131 aroK shikimate kinase; Reviewed
Probab=33.03 E-value=19 Score=35.44 Aligned_cols=17 Identities=35% Similarity=0.335 Sum_probs=14.4
Q ss_pred ccEEeeccCCCCcceec
Q 002104 176 ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM 192 (966)
.+|+-+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 47899999999998753
No 220
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=32.83 E-value=26 Score=36.83 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=21.1
Q ss_pred HHHHHHhcC---CcccEEeeccCCCCcceec
Q 002104 165 PVIKSVLDG---YNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 165 PLV~svLdG---yNvcIfAYGQTGSGKTyTM 192 (966)
+-++.++.| ...++.-+|++|||||..+
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 346777775 3567889999999998754
No 221
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=32.74 E-value=13 Score=41.44 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=17.5
Q ss_pred cCCcccEEeeccCCCCccee
Q 002104 172 DGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 172 dGyNvcIfAYGQTGSGKTyT 191 (966)
.|++-+|+..|++|+|||.-
T Consensus 1 kg~~fnImVvG~sG~GKTTF 20 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTF 20 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHH
T ss_pred CCceEEEEEECCCCCCHHHH
Confidence 37888999999999999863
No 222
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=32.61 E-value=32 Score=43.24 Aligned_cols=37 Identities=30% Similarity=0.364 Sum_probs=23.8
Q ss_pred hHHHHHhhHHHHHHHhcCC------cccEEeeccCCCCcceec
Q 002104 156 QDEVFSEVEPVIKSVLDGY------NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 156 QedVF~eV~PLV~svLdGy------NvcIfAYGQTGSGKTyTM 192 (966)
|+++-+.+...|.....|. .+.++-+|+||+|||++.
T Consensus 459 Q~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 459 QDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELA 501 (731)
T ss_pred cHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHH
Confidence 4555555444444444444 346788999999999764
No 223
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.55 E-value=38 Score=44.22 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=14.0
Q ss_pred ccEEeeccCCCCcceec
Q 002104 176 ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM 192 (966)
+.+.-+|+||||||..+
T Consensus 27 gl~~I~G~nGaGKSTil 43 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLL 43 (1042)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 55678999999999765
No 224
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=32.50 E-value=17 Score=39.49 Aligned_cols=20 Identities=35% Similarity=0.570 Sum_probs=16.7
Q ss_pred cccEEeeccCCCCcceeccc
Q 002104 175 NACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM~G 194 (966)
...++-||.+|+|||++.-+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 45699999999999997754
No 225
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=32.43 E-value=27 Score=43.21 Aligned_cols=43 Identities=19% Similarity=0.428 Sum_probs=29.7
Q ss_pred eeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 143 NYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 143 ~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.-+||.+++. ..... .++..+..++...++-||++|+|||+..
T Consensus 150 p~~~~~iiGq----s~~~~---~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 150 PRAFSEIVGQ----ERAIK---ALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred cCcHHhceeC----cHHHH---HHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 3567777753 33333 3455556678888999999999998765
No 226
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=32.41 E-value=70 Score=38.57 Aligned_cols=104 Identities=20% Similarity=0.210 Sum_probs=60.8
Q ss_pred cCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEecceeec-ccCCCCCCCCCCCC
Q 002104 172 DGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGSLKD-LLVTQPTKATDPLP 250 (966)
Q Consensus 172 dGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e~~~~f~VsVS~lEIYNE~V~D-LL~~~~~~~~~~~~ 250 (966)
...++.|+-.|.||||| -++.|+|+..=.+. + .=.|.+.|-.|-.+.+-. |+.-.+...+....
T Consensus 161 A~s~a~VLI~GESGtGK-----------ElvAr~IH~~S~R~---~-~PFVavNcaAip~~l~ESELFGhekGAFTGA~~ 225 (464)
T COG2204 161 APSDASVLITGESGTGK-----------ELVARAIHQASPRA---K-GPFIAVNCAAIPENLLESELFGHEKGAFTGAIT 225 (464)
T ss_pred hCCCCCEEEECCCCCcH-----------HHHHHHHHhhCccc---C-CCceeeecccCCHHHHHHHhhcccccCcCCccc
Confidence 57799999999999999 35666665543321 1 223444444444443333 34333322222222
Q ss_pred Ccc-eeeecCCCcEEecCcEEEEecCHHHHHHHHHhccccc
Q 002104 251 PCL-SIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFR 290 (966)
Q Consensus 251 ~~L-~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR 290 (966)
... .+.....|..++..+.+.+..--.-++++|+.+.-.|
T Consensus 226 ~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~r 266 (464)
T COG2204 226 RRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFER 266 (464)
T ss_pred ccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEe
Confidence 222 2334445567888888888877778888888776554
No 227
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=32.40 E-value=20 Score=36.21 Aligned_cols=14 Identities=36% Similarity=0.762 Sum_probs=12.4
Q ss_pred EEeeccCCCCccee
Q 002104 178 IFAYGQTGTGKSFT 191 (966)
Q Consensus 178 IfAYGQTGSGKTyT 191 (966)
|+.+|.+|||||+.
T Consensus 2 i~i~G~pGsGKst~ 15 (183)
T TIGR01359 2 VFVLGGPGSGKGTQ 15 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999864
No 228
>PRK04328 hypothetical protein; Provisional
Probab=32.37 E-value=30 Score=37.63 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=20.2
Q ss_pred HHHHHhcC---CcccEEeeccCCCCcce
Q 002104 166 VIKSVLDG---YNACIFAYGQTGTGKSF 190 (966)
Q Consensus 166 LV~svLdG---yNvcIfAYGQTGSGKTy 190 (966)
-++.+|.| ....++-+|.+|||||.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSI 38 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence 45777776 47788999999999974
No 229
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=32.36 E-value=17 Score=36.32 Aligned_cols=18 Identities=39% Similarity=0.628 Sum_probs=14.7
Q ss_pred ccEEeeccCCCCcceecc
Q 002104 176 ACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM~ 193 (966)
+..+-||.+|+|||..|.
T Consensus 20 g~~vi~G~Ng~GKStil~ 37 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTILE 37 (202)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 456789999999998763
No 230
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=32.31 E-value=32 Score=43.21 Aligned_cols=17 Identities=35% Similarity=0.710 Sum_probs=14.6
Q ss_pred ccEEeeccCCCCcceec
Q 002104 176 ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM 192 (966)
-.|+-||++|+|||+.+
T Consensus 213 ~giLL~GppGtGKT~la 229 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLA 229 (733)
T ss_pred ceEEEECCCCCChHHHH
Confidence 45899999999999765
No 231
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=32.19 E-value=38 Score=41.90 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=15.1
Q ss_pred ccEEeeccCCCCcceecc
Q 002104 176 ACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM~ 193 (966)
...+-.|++|+|||||+.
T Consensus 202 ~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred CceEeeCCCCCCceeeHH
Confidence 456678999999999985
No 232
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=32.15 E-value=30 Score=36.70 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=20.5
Q ss_pred HHHHHHhcCC---cccEEeeccCCCCcceec
Q 002104 165 PVIKSVLDGY---NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 165 PLV~svLdGy---NvcIfAYGQTGSGKTyTM 192 (966)
+-++.++.|- ..+++.+|.+|||||+-.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 3456677543 667888899999998753
No 233
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=31.77 E-value=36 Score=42.55 Aligned_cols=35 Identities=23% Similarity=0.530 Sum_probs=26.1
Q ss_pred HHHHhhHHHHHHHh-cCCcccEEeeccCCCCcceec
Q 002104 158 EVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 158 dVF~eV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 192 (966)
.||.-.......++ .+.|-||+.-|.+|||||.|+
T Consensus 68 HifavA~~Ay~~m~~~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 68 HIFAIADAAYQSLVTYNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 46654433344443 588999999999999999987
No 234
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=31.59 E-value=35 Score=43.46 Aligned_cols=36 Identities=19% Similarity=0.433 Sum_probs=27.2
Q ss_pred HHHHHhhHHHHHHHh-cCCcccEEeeccCCCCcceec
Q 002104 157 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 157 edVF~eV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 192 (966)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 67 PHIYSLAQTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 357765444444444 699999999999999999986
No 235
>smart00338 BRLZ basic region leucin zipper.
Probab=31.31 E-value=95 Score=27.05 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q 002104 444 KNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQL 485 (966)
Q Consensus 444 ~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeql 485 (966)
..-...+..|+.++..+..++..|..++..+..++..+..++
T Consensus 22 ~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 22 ERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566778888888899999999988888888777766554
No 236
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=31.08 E-value=35 Score=39.25 Aligned_cols=42 Identities=29% Similarity=0.490 Sum_probs=30.0
Q ss_pred eecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 144 YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
|.|..|.+ |+++ +..++-.+++..-+-++-.|.+|+|||..+
T Consensus 1 ~pf~~ivg----q~~~---~~al~~~~~~~~~g~vli~G~~G~gKttl~ 42 (337)
T TIGR02030 1 FPFTAIVG----QDEM---KLALLLNVIDPKIGGVMVMGDRGTGKSTAV 42 (337)
T ss_pred CCcccccc----HHHH---HHHHHHHhcCCCCCeEEEEcCCCCCHHHHH
Confidence 44555554 4443 345667777877778899999999999876
No 237
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=31.07 E-value=24 Score=40.39 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=14.0
Q ss_pred EEeeccCCCCcceecc
Q 002104 178 IFAYGQTGTGKSFTME 193 (966)
Q Consensus 178 IfAYGQTGSGKTyTM~ 193 (966)
++..|.||||||+++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5789999999999873
No 238
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=31.05 E-value=36 Score=37.86 Aligned_cols=33 Identities=33% Similarity=0.589 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCcccEEeeccCCCCcceec------ccCCC
Q 002104 164 EPVIKSVLDGYNACIFAYGQTGTGKSFTM------EGTPD 197 (966)
Q Consensus 164 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM------~G~~e 197 (966)
.||+ ..+.--+..+--||+|++|||.++ +|+++
T Consensus 183 ~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~~~a~Sv~G~p~ 221 (286)
T PF06048_consen 183 APLL-SLLGVEGFGFHLYGQSSSGKTTALQLAASVWGNPD 221 (286)
T ss_pred HHHH-HHhCCCceEEEEEeCCCCCHHHHHHHhhhhCcCch
Confidence 3444 455666778899999999999877 56655
No 239
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=30.93 E-value=37 Score=39.76 Aligned_cols=28 Identities=32% Similarity=0.640 Sum_probs=21.5
Q ss_pred HHHHHHhcCCc---ccEEeeccCCCCcceecc
Q 002104 165 PVIKSVLDGYN---ACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 165 PLV~svLdGyN---vcIfAYGQTGSGKTyTM~ 193 (966)
|++...|.|.- -|||+ |+||||||.-|.
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFls 291 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFLS 291 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEeh
Confidence 66777888874 35665 999999998874
No 240
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=30.86 E-value=39 Score=39.98 Aligned_cols=74 Identities=22% Similarity=0.336 Sum_probs=45.8
Q ss_pred ceeecceeeCCCCChHHHHHhh-HHHHHHHhc--CC--cccEEeeccCCCCcceec------ccC-----------CCCC
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEV-EPVIKSVLD--GY--NACIFAYGQTGTGKSFTM------EGT-----------PDSP 199 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV-~PLV~svLd--Gy--NvcIfAYGQTGSGKTyTM------~G~-----------~e~p 199 (966)
+.+.||.+.+.----..+.+.+ ..+....+. |. ---+.-||+.|+|||+.. .|- ....
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 4567777765443334444443 566666663 22 235778999999999873 121 1234
Q ss_pred CcHHHHHHHHHHHHHh
Q 002104 200 GIVPRAIEAIFKQAME 215 (966)
Q Consensus 200 GIIPRale~LF~~i~e 215 (966)
|=-.+.++++|..+.+
T Consensus 190 GEsEk~IR~~F~~A~~ 205 (413)
T PLN00020 190 GEPGKLIRQRYREAAD 205 (413)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 6667888888877643
No 241
>PF13173 AAA_14: AAA domain
Probab=30.74 E-value=21 Score=34.48 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.6
Q ss_pred cEEeeccCCCCcceecc
Q 002104 177 CIFAYGQTGTGKSFTME 193 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM~ 193 (966)
.++-+|+.|+|||+.+.
T Consensus 4 ~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLK 20 (128)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57889999999999763
No 242
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=30.73 E-value=36 Score=43.28 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=15.7
Q ss_pred ccEEeeccCCCCcceecc
Q 002104 176 ACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM~ 193 (966)
.+|.-.|+||+|||+|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 477889999999999984
No 243
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=30.46 E-value=45 Score=41.96 Aligned_cols=48 Identities=27% Similarity=0.585 Sum_probs=34.3
Q ss_pred HHHHhhHHHHHHHh--cCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHh
Q 002104 158 EVFSEVEPVIKSVL--DGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME 215 (966)
Q Consensus 158 dVF~eV~PLV~svL--dGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e 215 (966)
.-|.+|...+..++ +|--+|+..-|..|||||+|+.+ .+..|-....+
T Consensus 403 ~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~----------Vm~~Lq~~s~~ 452 (767)
T KOG1514|consen 403 NEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLE----------VMKELQTSSAQ 452 (767)
T ss_pred HHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHH----------HHHHHHHHHhh
Confidence 44555666666666 36677999999999999999853 66666654433
No 244
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=30.37 E-value=35 Score=38.07 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=22.7
Q ss_pred ChHHHHHhhHHHHHHHhcCC-cccEEeeccCCCCcceec
Q 002104 155 SQDEVFSEVEPVIKSVLDGY-NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 155 sQedVF~eV~PLV~svLdGy-NvcIfAYGQTGSGKTyTM 192 (966)
.|+.+.+.+... +-.|. ..+++-||+.|+|||.+.
T Consensus 18 g~~~~~~~l~~~---~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 18 GQEHIVQTLKNA---IKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred CcHHHHHHHHHH---HHcCCCCeEEEEECCCCCCHHHHH
Confidence 355555544333 33454 346889999999999765
No 245
>PRK07261 topology modulation protein; Provisional
Probab=30.33 E-value=22 Score=36.36 Aligned_cols=15 Identities=40% Similarity=0.501 Sum_probs=12.5
Q ss_pred EEeeccCCCCcceec
Q 002104 178 IFAYGQTGTGKSFTM 192 (966)
Q Consensus 178 IfAYGQTGSGKTyTM 192 (966)
|+-.|.+|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678899999998754
No 246
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.31 E-value=1e+02 Score=37.34 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHh
Q 002104 443 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLE 486 (966)
Q Consensus 443 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeql~ 486 (966)
..+|+++++.++.|...+..+.+.++.+|+++..++..++.|++
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444444445555666677777777777777663
No 247
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=30.31 E-value=33 Score=38.31 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=23.9
Q ss_pred CCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 152 PGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 152 p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
+...|.++-+.|. +.+-+|.+ ++.-.+||+|||.+.
T Consensus 9 ~r~~Q~~~m~~v~---~~~~~~~~--~~~eapTGtGKTl~~ 44 (289)
T smart00489 9 PYPIQYEFMEELK---RVLDRGKI--GILESPTGTGKTLSL 44 (289)
T ss_pred CCHHHHHHHHHHH---HHHHcCCc--EEEECCCCcchhHHH
Confidence 4556766655543 33346654 567779999999876
No 248
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=30.31 E-value=33 Score=38.31 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=23.9
Q ss_pred CCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 152 PGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 152 p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
+...|.++-+.|. +.+-+|.+ ++.-.+||+|||.+.
T Consensus 9 ~r~~Q~~~m~~v~---~~~~~~~~--~~~eapTGtGKTl~~ 44 (289)
T smart00488 9 PYPIQYEFMEELK---RVLDRGKI--GILESPTGTGKTLSL 44 (289)
T ss_pred CCHHHHHHHHHHH---HHHHcCCc--EEEECCCCcchhHHH
Confidence 4556766655543 33346654 567779999999876
No 249
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=30.25 E-value=32 Score=41.92 Aligned_cols=26 Identities=38% Similarity=0.569 Sum_probs=20.3
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+|..+++|.|+ ++..+||+|||.+.
T Consensus 20 ~~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 20 EIISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 456778899985 56679999999874
No 250
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=30.20 E-value=22 Score=35.91 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=12.6
Q ss_pred EEeeccCCCCcceec
Q 002104 178 IFAYGQTGTGKSFTM 192 (966)
Q Consensus 178 IfAYGQTGSGKTyTM 192 (966)
|+.+|.+|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998543
No 251
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.10 E-value=31 Score=42.59 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=26.5
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCC-cccEEeeccCCCCcceec
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGY-NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGy-NvcIfAYGQTGSGKTyTM 192 (966)
+||.|.+ |+.|.+.+...+. .|. .-+++-||+.|+|||.+.
T Consensus 11 ~f~eivG----q~~i~~~L~~~i~---~~r~~ha~Lf~Gp~G~GKTt~A 52 (584)
T PRK14952 11 TFAEVVG----QEHVTEPLSSALD---AGRINHAYLFSGPRGCGKTSSA 52 (584)
T ss_pred cHHHhcC----cHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHH
Confidence 4666654 5666555443333 343 345788999999999876
No 252
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=30.03 E-value=20 Score=41.85 Aligned_cols=17 Identities=41% Similarity=0.597 Sum_probs=14.1
Q ss_pred ccEEeeccCCCCcceec
Q 002104 176 ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM 192 (966)
--++.+|.||||||..|
T Consensus 43 ~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 43 AHTMIIGTTGTGKTTQI 59 (410)
T ss_pred ccEEEEcCCCCCHHHHH
Confidence 35789999999998754
No 253
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=29.99 E-value=21 Score=39.54 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=18.4
Q ss_pred cCCcccEEeeccCCCCcceec
Q 002104 172 DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 172 dGyNvcIfAYGQTGSGKTyTM 192 (966)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 488999999999999998754
No 254
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=29.96 E-value=32 Score=42.80 Aligned_cols=42 Identities=21% Similarity=0.434 Sum_probs=26.6
Q ss_pred eecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcce
Q 002104 144 YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSF 190 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTy 190 (966)
+.|+.+++.+..-..+.+.+ .. +...+..|+-+|.+|||||+
T Consensus 373 ~~~~~liG~S~~~~~~~~~~----~~-~a~~~~pVLI~GE~GTGK~~ 414 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQV----EM-VAQSDSTVLILGETGTGKEL 414 (686)
T ss_pred ccccceeecCHHHHHHHHHH----HH-HhCCCCCEEEECCCCcCHHH
Confidence 45666666544333333332 22 23567889999999999976
No 255
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=29.68 E-value=36 Score=37.27 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=17.5
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.++..+..|.+ |+-+|++|+|||...
T Consensus 13 ~~l~~l~~g~~--vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 13 RALRYLKSGYP--VHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHhcCCe--EEEEcCCCCCHHHHH
Confidence 34444455655 456899999998754
No 256
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.62 E-value=1e+02 Score=28.36 Aligned_cols=33 Identities=27% Similarity=0.435 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 002104 446 LQQKMKKIEEERLRVRGEIENLSEKLEALTRPA 478 (966)
Q Consensus 446 Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~ 478 (966)
|+-++.+|.+++..+..+...++...++|.+++
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~en 55 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALEREN 55 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444433
No 257
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=29.37 E-value=39 Score=38.70 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=21.0
Q ss_pred HHHHhcCCcccEEeeccCCCCcceec
Q 002104 167 IKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 167 V~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
++.+.+|.+..++..++||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 35567788778888999999999873
No 258
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=29.28 E-value=39 Score=42.16 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=27.2
Q ss_pred eCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 150 FHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 150 F~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
|.+...|+.+..++ ....-.++..-++..|+||||||.+.
T Consensus 260 f~lt~~Q~~ai~~I---~~d~~~~~~~~~Ll~~~TGSGKT~va 299 (681)
T PRK10917 260 FELTGAQKRVVAEI---LADLASPKPMNRLLQGDVGSGKTVVA 299 (681)
T ss_pred CCCCHHHHHHHHHH---HHhhhccCCceEEEECCCCCcHHHHH
Confidence 34666777776653 22333455567899999999999765
No 259
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=29.27 E-value=76 Score=35.97 Aligned_cols=42 Identities=29% Similarity=0.418 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 002104 436 RDQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRP 477 (966)
Q Consensus 436 ~~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~ 477 (966)
-.+|++.+.+|+.++++-++.+..-..||++|+.+|..+.+.
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrED 104 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMRED 104 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 468889999999999988888877778888888888776443
No 260
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=29.24 E-value=20 Score=41.31 Aligned_cols=34 Identities=26% Similarity=0.493 Sum_probs=22.7
Q ss_pred EEeeccCCCCcceeccc--------C-C-------CCCCcHHHHHHHHHH
Q 002104 178 IFAYGQTGTGKSFTMEG--------T-P-------DSPGIVPRAIEAIFK 211 (966)
Q Consensus 178 IfAYGQTGSGKTyTM~G--------~-~-------e~pGIIPRale~LF~ 211 (966)
...||+|||||++-+-. + + .+.|.||--=...++
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~ 139 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWE 139 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHH
Confidence 35699999999997742 1 1 245888865544444
No 261
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=29.07 E-value=46 Score=34.36 Aligned_cols=104 Identities=19% Similarity=0.173 Sum_probs=51.8
Q ss_pred cCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEeccee-ecccCCCCCCCCCCCC
Q 002104 172 DGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGSL-KDLLVTQPTKATDPLP 250 (966)
Q Consensus 172 dGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e~~~~f~VsVS~lEIYNE~V-~DLL~~~~~~~~~~~~ 250 (966)
..++..|+-+|.+||||+. +.+.|++........ -|.|.+-.+..+.+ ..|+............
T Consensus 19 a~~~~pVlI~GE~GtGK~~--------------lA~~IH~~s~r~~~p-fi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~ 83 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKEL--------------LARAIHNNSPRKNGP-FISVNCAALPEELLESELFGHEKGAFTGARS 83 (168)
T ss_dssp TTSTS-EEEECSTTSSHHH--------------HHHHHHHCSTTTTS--EEEEETTTS-HHHHHHHHHEBCSSSSTTTSS
T ss_pred hCCCCCEEEEcCCCCcHHH--------------HHHHHHHhhhcccCC-eEEEehhhhhcchhhhhhhcccccccccccc
Confidence 4788999999999999953 233333322222222 22332222222222 2233322111000000
Q ss_pred -CcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhccccc
Q 002104 251 -PCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFR 290 (966)
Q Consensus 251 -~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR 290 (966)
..-.+.....|.+++.++.......-..++++|+.+.-.|
T Consensus 84 ~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~ 124 (168)
T PF00158_consen 84 DKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTR 124 (168)
T ss_dssp EBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEEC
T ss_pred ccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhcc
Confidence 0112233455667888888888877788888888765433
No 262
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=28.89 E-value=25 Score=34.12 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=13.2
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
+|+.+|.+|||||+.-
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999998643
No 263
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=28.78 E-value=46 Score=35.76 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=23.0
Q ss_pred hHHHHHHHhc--CCcccEEeeccCCCCcceec
Q 002104 163 VEPVIKSVLD--GYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 163 V~PLV~svLd--GyNvcIfAYGQTGSGKTyTM 192 (966)
+..+.+.+.+ .-...|.-+|..|+|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 5566666666 66778999999999998643
No 264
>PRK05580 primosome assembly protein PriA; Validated
Probab=28.57 E-value=36 Score=42.52 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=23.4
Q ss_pred CCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 151 HPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 151 ~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.....|+++++.+.. .. ++ ..++.+|.||||||.+.
T Consensus 144 ~Lt~~Q~~ai~~i~~---~~--~~-~~~Ll~~~TGSGKT~v~ 179 (679)
T PRK05580 144 TLNPEQAAAVEAIRA---AA--GF-SPFLLDGVTGSGKTEVY 179 (679)
T ss_pred CCCHHHHHHHHHHHh---cc--CC-CcEEEECCCCChHHHHH
Confidence 445567766655421 11 33 45899999999999765
No 265
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=28.52 E-value=95 Score=34.75 Aligned_cols=43 Identities=23% Similarity=0.461 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 002104 436 RDQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPA 478 (966)
Q Consensus 436 ~~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~ 478 (966)
++.......+++.++..|++|+..|+.+++.|+.++..+....
T Consensus 210 R~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 210 RDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444567778888899999999999998888888776543
No 266
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.50 E-value=45 Score=39.81 Aligned_cols=18 Identities=33% Similarity=0.674 Sum_probs=15.0
Q ss_pred ccEEeeccCCCCcceecc
Q 002104 176 ACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM~ 193 (966)
..|+..|++|+|||+|..
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457778999999999874
No 267
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=28.32 E-value=54 Score=41.95 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=29.6
Q ss_pred hHHHHHh--hHHHHHHHhcCCcccEEeeccCCCCcceeccc
Q 002104 156 QDEVFSE--VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 156 QedVF~e--V~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 194 (966)
...-|+. |..+++++-+|.+-.+++. .||||||+|-+-
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAia 204 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIA 204 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEE-ecCCCcceeHHH
Confidence 3445654 6889999999999965554 799999999764
No 268
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=28.28 E-value=42 Score=37.94 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=19.4
Q ss_pred hcCCcccEEeeccCCCCcceecc
Q 002104 171 LDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 171 LdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
-..-+..++-||+.|||||.+|.
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHHH
Confidence 45667789999999999999874
No 269
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=28.26 E-value=28 Score=34.95 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=12.7
Q ss_pred EEeeccCCCCcceec
Q 002104 178 IFAYGQTGTGKSFTM 192 (966)
Q Consensus 178 IfAYGQTGSGKTyTM 192 (966)
++.+|.+|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999998754
No 270
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=28.26 E-value=35 Score=41.91 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=18.8
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.|..++.|.++. +.++||||||.+.
T Consensus 33 ai~~il~g~dvl--v~apTGsGKTl~y 57 (607)
T PRK11057 33 IIDAVLSGRDCL--VVMPTGGGKSLCY 57 (607)
T ss_pred HHHHHHcCCCEE--EEcCCCchHHHHH
Confidence 456678898864 4579999999653
No 271
>PRK08118 topology modulation protein; Reviewed
Probab=28.22 E-value=25 Score=35.91 Aligned_cols=13 Identities=46% Similarity=0.685 Sum_probs=11.7
Q ss_pred EEeeccCCCCcce
Q 002104 178 IFAYGQTGTGKSF 190 (966)
Q Consensus 178 IfAYGQTGSGKTy 190 (966)
|+..|+.|||||+
T Consensus 4 I~I~G~~GsGKST 16 (167)
T PRK08118 4 IILIGSGGSGKST 16 (167)
T ss_pred EEEECCCCCCHHH
Confidence 7889999999985
No 272
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.06 E-value=1.1e+02 Score=36.90 Aligned_cols=89 Identities=15% Similarity=0.160 Sum_probs=57.6
Q ss_pred chHHHHHhhHHHHHhhhhhhhhhhhhHHHHHHHHHhcCCCcccccccccccchhhcccCCccchHHHHHHHHHHHHHHHH
Q 002104 5 DSKQSVHKLGETIHSLLGLKAHLTSSWVKSVCDIVKNLPSTDIKGKKLETQCSEIKEIDSGPTISGIKDELATLSACINQ 84 (966)
Q Consensus 5 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~k~~~~~~~~~~~~~~~~i~~l~~El~~l~~~~~~ 84 (966)
+...-|.|+...|.++.-.-.+|+..|....--+..+. -.++.+....+-+... -..|+++..++..+...++.
T Consensus 290 dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kk-----l~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~ 363 (521)
T KOG1937|consen 290 DGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKK-----LQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIES 363 (521)
T ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-----HHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 33456788888999999999999999998655443222 1122222222212111 35688888888888888776
Q ss_pred HHHHHHhhhhhhccC
Q 002104 85 LNIQRRQILNEFLDS 99 (966)
Q Consensus 85 ~~~eRk~L~N~l~el 99 (966)
-+..+.+|++++..+
T Consensus 364 ~eel~~~Lrsele~l 378 (521)
T KOG1937|consen 364 NEELAEKLRSELEKL 378 (521)
T ss_pred hHHHHHHHHHHHhcC
Confidence 667777777777644
No 273
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=28.04 E-value=1.8e+02 Score=29.72 Aligned_cols=33 Identities=21% Similarity=0.476 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHH
Q 002104 451 KKIEEERLRVRGEIENLSEKLEALTRPAHSFQE 483 (966)
Q Consensus 451 k~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qe 483 (966)
.+||.+...|..+++.|.+++.++..+...+..
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666655555444433
No 274
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=27.93 E-value=26 Score=33.51 Aligned_cols=14 Identities=43% Similarity=0.548 Sum_probs=12.0
Q ss_pred EEeeccCCCCccee
Q 002104 178 IFAYGQTGTGKSFT 191 (966)
Q Consensus 178 IfAYGQTGSGKTyT 191 (966)
|+-.|++|||||..
T Consensus 2 I~i~G~~GsGKst~ 15 (147)
T cd02020 2 IAIDGPAGSGKSTV 15 (147)
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999874
No 275
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=27.92 E-value=23 Score=39.35 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=13.5
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
-|+-+|++|||||+.-
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4788999999999764
No 276
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=27.87 E-value=42 Score=35.29 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=20.7
Q ss_pred HHHHHHhcCC---cccEEeeccCCCCcceec
Q 002104 165 PVIKSVLDGY---NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 165 PLV~svLdGy---NvcIfAYGQTGSGKTyTM 192 (966)
|-++.++.|- ...+.-+|.+|||||...
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3467777543 456799999999998764
No 277
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.84 E-value=1.7e+02 Score=31.71 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhH
Q 002104 446 LQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSF 481 (966)
Q Consensus 446 Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~ 481 (966)
..+.+.+|++++.+|+++++.++.+++.++.++..+
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555444433333
No 278
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=27.78 E-value=23 Score=35.19 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=11.1
Q ss_pred EEeeccCCCCccee
Q 002104 178 IFAYGQTGTGKSFT 191 (966)
Q Consensus 178 IfAYGQTGSGKTyT 191 (966)
|+-.|.+|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 45679999999854
No 279
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=27.75 E-value=23 Score=44.39 Aligned_cols=19 Identities=47% Similarity=0.660 Sum_probs=15.7
Q ss_pred cccEEeeccCCCCcceecc
Q 002104 175 NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM~ 193 (966)
|.-++..|.||||||++|-
T Consensus 430 n~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred ccceEEEcCCCCCHHHHHH
Confidence 4456888999999999984
No 280
>CHL00181 cbbX CbbX; Provisional
Probab=27.53 E-value=26 Score=39.20 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=12.9
Q ss_pred EEeeccCCCCcceec
Q 002104 178 IFAYGQTGTGKSFTM 192 (966)
Q Consensus 178 IfAYGQTGSGKTyTM 192 (966)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 677999999999864
No 281
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=27.53 E-value=23 Score=42.71 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=15.7
Q ss_pred ccEEeeccCCCCcceecc
Q 002104 176 ACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM~ 193 (966)
..|.-.|+||+|||.|+.
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 467888999999999984
No 282
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=27.32 E-value=38 Score=40.00 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=15.0
Q ss_pred cccEEeeccCCCCcceec
Q 002104 175 NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM 192 (966)
...|+-+|+||+|||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 356899999999998754
No 283
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=27.32 E-value=45 Score=39.93 Aligned_cols=47 Identities=23% Similarity=0.386 Sum_probs=27.4
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceecccCCC----CCCcHHHHHHHHHHHHHh
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTMEGTPD----SPGIVPRAIEAIFKQAME 215 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM~G~~e----~pGIIPRale~LF~~i~e 215 (966)
++.-+=.++|. +-.|++|+||||.-.+-.. ..| -+-.+..||..+..
T Consensus 202 l~~fve~~~Nl--i~lGp~GTGKThla~~l~~~~a~~sG-~f~T~a~Lf~~L~~ 252 (449)
T TIGR02688 202 LLPLVEPNYNL--IELGPKGTGKSYIYNNLSPYVILISG-GTITVAKLFYNIST 252 (449)
T ss_pred hHHHHhcCCcE--EEECCCCCCHHHHHHHHhHHHHHHcC-CcCcHHHHHHHHHH
Confidence 33334466665 5679999999997765111 134 23345566665543
No 284
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=27.26 E-value=26 Score=30.38 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=12.5
Q ss_pred EEeeccCCCCcceecc
Q 002104 178 IFAYGQTGTGKSFTME 193 (966)
Q Consensus 178 IfAYGQTGSGKTyTM~ 193 (966)
++.+|..|+|||.+..
T Consensus 2 ~~~~g~~G~Gktt~~~ 17 (99)
T cd01983 2 IVVTGKGGVGKTTLAA 17 (99)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5667888999998753
No 285
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=27.23 E-value=2e+02 Score=24.42 Aligned_cols=31 Identities=32% Similarity=0.526 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002104 438 QKEVSMKNLQQKMKKIEEERLRVRGEIENLS 468 (966)
Q Consensus 438 ~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk 468 (966)
.+...+..+...+..|+.++..|+.+|..|+
T Consensus 22 rkk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 22 RKKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455556666666666666666555554
No 286
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.21 E-value=24 Score=40.07 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=15.7
Q ss_pred cccEEeeccCCCCcceecc
Q 002104 175 NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM~ 193 (966)
.-+|+-.|.||||||++|.
T Consensus 143 ~~siii~G~t~sGKTt~ln 161 (312)
T COG0630 143 RKSIIICGGTASGKTTLLN 161 (312)
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3457889999999999884
No 287
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=27.10 E-value=40 Score=42.68 Aligned_cols=42 Identities=26% Similarity=0.504 Sum_probs=29.5
Q ss_pred ceeeCCCCChHHHHHh---h----HHHHHHHhcCCcccEEeeccCCCCccee
Q 002104 147 DKVFHPGSSQDEVFSE---V----EPVIKSVLDGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 147 D~VF~p~asQedVF~e---V----~PLV~svLdGyNvcIfAYGQTGSGKTyT 191 (966)
++-+++++-|..+|.. + ..+++.+| |.|..|-+ +||+|||+.
T Consensus 44 ~~~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~l--PTG~GKTfI 92 (746)
T KOG0354|consen 44 SHSLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIAL--PTGSGKTFI 92 (746)
T ss_pred cCCCChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEe--ecCCCccch
Confidence 4445566666666643 2 35889999 99976554 999999984
No 288
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=27.10 E-value=1.7e+02 Score=28.78 Aligned_cols=46 Identities=24% Similarity=0.347 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHhh
Q 002104 442 SMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLEV 487 (966)
Q Consensus 442 ~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeql~~ 487 (966)
....|...++.-+.++.++..|++.|.-.-.+|++....++++++.
T Consensus 27 k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 27 KNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777778888888899999999989999988889888874
No 289
>PRK08233 hypothetical protein; Provisional
Probab=27.06 E-value=27 Score=34.84 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=11.9
Q ss_pred EEeeccCCCCcceec
Q 002104 178 IFAYGQTGTGKSFTM 192 (966)
Q Consensus 178 IfAYGQTGSGKTyTM 192 (966)
|.--|++|||||+..
T Consensus 6 I~I~G~~GsGKtTla 20 (182)
T PRK08233 6 ITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999998754
No 290
>PHA02244 ATPase-like protein
Probab=26.99 E-value=50 Score=38.88 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=14.5
Q ss_pred cCCcccEEeeccCCCCcceec
Q 002104 172 DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 172 dGyNvcIfAYGQTGSGKTyTM 192 (966)
.|.+ |+-+|+||+|||+..
T Consensus 118 ~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 118 ANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred cCCC--EEEECCCCCCHHHHH
Confidence 4554 555999999999765
No 291
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=26.98 E-value=38 Score=37.23 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=17.4
Q ss_pred CCcccEEeeccCCCCcceec
Q 002104 173 GYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 173 GyNvcIfAYGQTGSGKTyTM 192 (966)
.-+.+|.-||+=|||||+.|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 56778999999999999865
No 292
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=26.85 E-value=42 Score=38.04 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=25.1
Q ss_pred cceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCccee
Q 002104 146 FDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 146 FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyT 191 (966)
||.+++.+..-..+.+. +..+. ..+.-|+-+|.+||||++.
T Consensus 5 ~~~liG~S~~~~~~~~~----i~~~a-~~~~pVlI~GE~GtGK~~l 45 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQ----VSRLA-PLDKPVLIIGERGTGKELI 45 (326)
T ss_pred cCccEECCHHHHHHHHH----HHHHh-CCCCCEEEECCCCCcHHHH
Confidence 45555544333334333 33332 5578899999999999653
No 293
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=26.80 E-value=25 Score=31.18 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=12.6
Q ss_pred EEeeccCCCCcceec
Q 002104 178 IFAYGQTGTGKSFTM 192 (966)
Q Consensus 178 IfAYGQTGSGKTyTM 192 (966)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999766
No 294
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=26.79 E-value=41 Score=35.39 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=18.2
Q ss_pred HHHHhcC-C--cccEEeeccCCCCcce
Q 002104 167 IKSVLDG-Y--NACIFAYGQTGTGKSF 190 (966)
Q Consensus 167 V~svLdG-y--NvcIfAYGQTGSGKTy 190 (966)
++.++.| + +..++.+|++|||||.
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~ 34 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTT 34 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHH
Confidence 4556633 2 6789999999999974
No 295
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=26.78 E-value=1.3e+02 Score=29.42 Aligned_cols=32 Identities=38% Similarity=0.617 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002104 443 MKNLQQKMKKIEEERLRVRGEIENLSEKLEAL 474 (966)
Q Consensus 443 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l 474 (966)
+..|+..+..+.+|+..|+-|.+.|++.|.++
T Consensus 24 ~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 24 LEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555443
No 296
>PF02202 Tachykinin: Tachykinin family; InterPro: IPR002040 This family includes peptides, which belong to the tachykinin family. Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. Tachykinins, like most other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Tachykinins are from ten to twelve residues long.; GO: 0007217 tachykinin receptor signaling pathway, 0007268 synaptic transmission; PDB: 1MYU_A 1N6T_A 2GFR_A.
Probab=26.74 E-value=23 Score=21.86 Aligned_cols=7 Identities=71% Similarity=1.037 Sum_probs=4.2
Q ss_pred ccccccC
Q 002104 959 DFFHGLM 965 (966)
Q Consensus 959 ~~~~~~~ 965 (966)
|=|||||
T Consensus 5 d~F~GLM 11 (11)
T PF02202_consen 5 DQFYGLM 11 (11)
T ss_dssp HHHCCC-
T ss_pred ccceecC
Confidence 4577877
No 297
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=26.68 E-value=25 Score=35.49 Aligned_cols=16 Identities=31% Similarity=0.652 Sum_probs=13.8
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.|+-.|++|||||.++
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678899999999876
No 298
>PTZ00110 helicase; Provisional
Probab=26.31 E-value=35 Score=41.42 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=19.5
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..++.|.|+ ++.++||||||.+.
T Consensus 160 aip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 160 GWPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHHhcCCCE--EEEeCCCChHHHHH
Confidence 35567899875 56789999999874
No 299
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=26.05 E-value=43 Score=34.93 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=21.1
Q ss_pred HHHHHHhcC-C--cccEEeeccCCCCcceecc
Q 002104 165 PVIKSVLDG-Y--NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 165 PLV~svLdG-y--NvcIfAYGQTGSGKTyTM~ 193 (966)
+-++.++.| + ...+.-+|++|+|||..+.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 456777754 3 4467889999999998653
No 300
>PTZ00014 myosin-A; Provisional
Probab=26.03 E-value=54 Score=42.16 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=26.5
Q ss_pred HHHHhhHHHHHHHh-cCCcccEEeeccCCCCcceec
Q 002104 158 EVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 158 dVF~eV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 192 (966)
.||.-.......++ .+.|-||+.-|.+|||||.+.
T Consensus 165 HifavA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 165 HVFTTARRALENLHGVKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 36665444444444 689999999999999999875
No 301
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=25.93 E-value=45 Score=34.81 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=19.8
Q ss_pred HHHHHhc-CCc--ccEEeeccCCCCcceec
Q 002104 166 VIKSVLD-GYN--ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLd-GyN--vcIfAYGQTGSGKTyTM 192 (966)
-++.++. |.. ..+..+|.+|||||...
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 3566775 443 34789999999999764
No 302
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=25.91 E-value=26 Score=32.46 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=12.9
Q ss_pred EEeeccCCCCcceec
Q 002104 178 IFAYGQTGTGKSFTM 192 (966)
Q Consensus 178 IfAYGQTGSGKTyTM 192 (966)
|..+|.+|||||..+
T Consensus 4 i~~~G~~~~GKstl~ 18 (161)
T TIGR00231 4 IVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999865
No 303
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=25.90 E-value=25 Score=32.44 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=12.8
Q ss_pred EEeeccCCCCcceec
Q 002104 178 IFAYGQTGTGKSFTM 192 (966)
Q Consensus 178 IfAYGQTGSGKTyTM 192 (966)
|+..|..|+|||..+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 678899999998754
No 304
>PRK06217 hypothetical protein; Validated
Probab=25.65 E-value=30 Score=35.48 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=12.1
Q ss_pred EEeeccCCCCccee
Q 002104 178 IFAYGQTGTGKSFT 191 (966)
Q Consensus 178 IfAYGQTGSGKTyT 191 (966)
|+-.|.+|||||+.
T Consensus 4 I~i~G~~GsGKSTl 17 (183)
T PRK06217 4 IHITGASGSGTTTL 17 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 78889999999864
No 305
>PRK01172 ski2-like helicase; Provisional
Probab=25.56 E-value=45 Score=41.35 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=16.9
Q ss_pred HHHhcCCcccEEeeccCCCCccee
Q 002104 168 KSVLDGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 168 ~svLdGyNvcIfAYGQTGSGKTyT 191 (966)
..+.+|.| ++..++||||||..
T Consensus 32 ~~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 32 EQLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHHhcCCc--EEEECCCCchHHHH
Confidence 34567776 67778999999975
No 306
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=25.38 E-value=41 Score=42.47 Aligned_cols=42 Identities=19% Similarity=0.417 Sum_probs=26.4
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCC-cccEEeeccCCCCcceecc
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGY-NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGy-NvcIfAYGQTGSGKTyTM~ 193 (966)
+||.|.+ |+.+...+...+. .|. .-.++-||..|+|||++..
T Consensus 14 tFddIIG----Qe~vv~~L~~ai~---~~rl~Ha~Lf~GP~GvGKTTlAr 56 (709)
T PRK08691 14 TFADLVG----QEHVVKALQNALD---EGRLHHAYLLTGTRGVGKTTIAR 56 (709)
T ss_pred CHHHHcC----cHHHHHHHHHHHH---cCCCCeEEEEECCCCCcHHHHHH
Confidence 3555554 5555554433333 333 4568999999999998763
No 307
>PHA02624 large T antigen; Provisional
Probab=25.38 E-value=51 Score=41.09 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=21.9
Q ss_pred HHHHHhcCCcc--cEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNA--CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNv--cIfAYGQTGSGKTyTM 192 (966)
++..++.|... ||+-||+.|||||+-.
T Consensus 420 ~lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 420 ILKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 35677778766 9999999999998754
No 308
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=25.21 E-value=27 Score=36.08 Aligned_cols=15 Identities=33% Similarity=0.421 Sum_probs=12.3
Q ss_pred EEeeccCCCCcceec
Q 002104 178 IFAYGQTGTGKSFTM 192 (966)
Q Consensus 178 IfAYGQTGSGKTyTM 192 (966)
|.-.|.+|||||++-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999763
No 309
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=25.16 E-value=37 Score=42.87 Aligned_cols=37 Identities=24% Similarity=0.553 Sum_probs=0.0
Q ss_pred EEeeccCCCCcceecccCCCCC-----------------CcHHHHHHHHHHHHH
Q 002104 178 IFAYGQTGTGKSFTMEGTPDSP-----------------GIVPRAIEAIFKQAM 214 (966)
Q Consensus 178 IfAYGQTGSGKTyTM~G~~e~p-----------------GIIPRale~LF~~i~ 214 (966)
|+-||+.|+||||...-...+. |---..+++||.+++
T Consensus 704 iLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~ 757 (952)
T KOG0735|consen 704 ILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQ 757 (952)
T ss_pred eEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhh
No 310
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=25.13 E-value=29 Score=39.23 Aligned_cols=13 Identities=38% Similarity=0.731 Sum_probs=11.6
Q ss_pred eeccCCCCcceec
Q 002104 180 AYGQTGTGKSFTM 192 (966)
Q Consensus 180 AYGQTGSGKTyTM 192 (966)
-.|++|||||+||
T Consensus 32 liGpSGsGKTTtL 44 (309)
T COG1125 32 LIGPSGSGKTTTL 44 (309)
T ss_pred EECCCCCcHHHHH
Confidence 4599999999998
No 311
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=25.11 E-value=28 Score=44.90 Aligned_cols=20 Identities=45% Similarity=0.630 Sum_probs=17.2
Q ss_pred CcccEEeeccCCCCcceecc
Q 002104 174 YNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 174 yNvcIfAYGQTGSGKTyTM~ 193 (966)
.|+-.+..|.||||||++|-
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~ 493 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLT 493 (893)
T ss_pred CcccEEEECCCCCCHHHHHH
Confidence 47778889999999999884
No 312
>PHA01747 putative ATP-dependent protease
Probab=25.01 E-value=40 Score=39.79 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=26.3
Q ss_pred hHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 163 VEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 163 V~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
+-|+|++-..+-|.-++=.|+.||||||+.
T Consensus 178 LiPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 178 LLPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred hhhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 568888777888999999999999999975
No 313
>PRK14531 adenylate kinase; Provisional
Probab=24.86 E-value=32 Score=35.30 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=12.8
Q ss_pred cEEeeccCCCCccee
Q 002104 177 CIFAYGQTGTGKSFT 191 (966)
Q Consensus 177 cIfAYGQTGSGKTyT 191 (966)
-|+.+|.+|||||+.
T Consensus 4 ~i~i~G~pGsGKsT~ 18 (183)
T PRK14531 4 RLLFLGPPGAGKGTQ 18 (183)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999865
No 314
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=24.85 E-value=26 Score=40.66 Aligned_cols=17 Identities=35% Similarity=0.616 Sum_probs=12.5
Q ss_pred ccEEeeccCCCCcceec
Q 002104 176 ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM 192 (966)
--++..|.||||||.+|
T Consensus 16 ~~~li~G~~GsGKT~~i 32 (386)
T PF10412_consen 16 RHILIIGATGSGKTQAI 32 (386)
T ss_dssp G-EEEEE-TTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 34788999999999755
No 315
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=24.85 E-value=52 Score=42.44 Aligned_cols=35 Identities=20% Similarity=0.423 Sum_probs=22.0
Q ss_pred cccEEeeccCCCCccee-------cccCCCCCCcHHHHHHHHHH
Q 002104 175 NACIFAYGQTGTGKSFT-------MEGTPDSPGIVPRAIEAIFK 211 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyT-------M~G~~e~pGIIPRale~LF~ 211 (966)
.+..+-+|+||||||.- +||...-.| +....++..
T Consensus 25 ~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~--~~~~~~~i~ 66 (908)
T COG0419 25 SGIFLIVGPNGAGKSSILDAITFALYGKTPRLG--AFSLDDLIR 66 (908)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc--chhhhHHHh
Confidence 44556789999999854 477655444 344444443
No 316
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=24.75 E-value=33 Score=37.62 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=24.7
Q ss_pred CCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 151 HPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 151 ~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.++++|....+....+-+. .-....|+..|.||+|||.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~--~~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 9 FPDAAQTKALELEAKGKEE--LDFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred CcHHHHHHHHHHHHHhhhh--ccCCeEEEEECCCCCcHHHHH
Confidence 3455565555433333322 334557888999999998875
No 317
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=24.69 E-value=42 Score=41.27 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=28.0
Q ss_pred eeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcce
Q 002104 143 NYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSF 190 (966)
Q Consensus 143 ~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTy 190 (966)
.+.|+.+.+.+. .+..+...+..+. ..+..|+-+|.+||||++
T Consensus 321 ~~~~~~l~g~s~----~~~~~~~~~~~~a-~~~~pvli~Ge~GtGK~~ 363 (638)
T PRK11388 321 SHTFDHMPQDSP----QMRRLIHFGRQAA-KSSFPVLLCGEEGVGKAL 363 (638)
T ss_pred cccccceEECCH----HHHHHHHHHHHHh-CcCCCEEEECCCCcCHHH
Confidence 467888776443 3333333333333 467789999999999964
No 318
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=24.55 E-value=56 Score=41.96 Aligned_cols=42 Identities=29% Similarity=0.405 Sum_probs=27.9
Q ss_pred ceeeCCCCChHHHHHhhHHHHHHHhcCC------cccEEeeccCCCCcceec
Q 002104 147 DKVFHPGSSQDEVFSEVEPVIKSVLDGY------NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 147 D~VF~p~asQedVF~eV~PLV~svLdGy------NvcIfAYGQTGSGKTyTM 192 (966)
.+|++ |...-..|...|..+..|. .+.++-+|++|+|||++.
T Consensus 565 ~~v~G----Q~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA 612 (852)
T TIGR03346 565 ERVVG----QDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELA 612 (852)
T ss_pred cccCC----ChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHH
Confidence 34665 5555555555555555553 356778899999999764
No 319
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=24.55 E-value=36 Score=41.92 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=16.8
Q ss_pred CcccEEeeccCCCCcceecc
Q 002104 174 YNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 174 yNvcIfAYGQTGSGKTyTM~ 193 (966)
..+.++..|..|||||.||.
T Consensus 13 ~~~~~~V~Ag~GSGKT~~L~ 32 (664)
T TIGR01074 13 VTGPCLVLAGAGSGKTRVIT 32 (664)
T ss_pred CCCCEEEEecCCCCHHHHHH
Confidence 34568899999999999975
No 320
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=24.43 E-value=1.6e+02 Score=25.62 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH
Q 002104 443 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQ 484 (966)
Q Consensus 443 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeq 484 (966)
...-...+..|+.++..|..+...|...+..|......+..+
T Consensus 21 R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 21 RQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344456677788888888888888888888777766666554
No 321
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=24.32 E-value=51 Score=40.39 Aligned_cols=42 Identities=24% Similarity=0.505 Sum_probs=29.4
Q ss_pred ceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCc
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGK 188 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGK 188 (966)
..|+||.+.+.... +..+..++. -..+.+++|+-+|.|||||
T Consensus 240 a~y~f~~Iig~S~~----m~~~~~~ak-r~A~tdstVLi~GESGTGK 281 (560)
T COG3829 240 AKYTFDDIIGESPA----MLRVLELAK-RIAKTDSTVLILGESGTGK 281 (560)
T ss_pred cccchhhhccCCHH----HHHHHHHHH-hhcCCCCcEEEecCCCccH
Confidence 45899998886533 222222222 2578999999999999999
No 322
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=24.31 E-value=29 Score=35.75 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=12.5
Q ss_pred EEeeccCCCCcceec
Q 002104 178 IFAYGQTGTGKSFTM 192 (966)
Q Consensus 178 IfAYGQTGSGKTyTM 192 (966)
|.--|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999876
No 323
>CHL00195 ycf46 Ycf46; Provisional
Probab=24.29 E-value=29 Score=41.83 Aligned_cols=17 Identities=41% Similarity=0.579 Sum_probs=14.6
Q ss_pred ccEEeeccCCCCcceec
Q 002104 176 ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM 192 (966)
-.|+-||+.|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46999999999998764
No 324
>PRK13767 ATP-dependent helicase; Provisional
Probab=24.23 E-value=40 Score=43.41 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=18.5
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..+++|.|+.| ..+||||||...
T Consensus 40 Ai~~il~g~nvli--~APTGSGKTlaa 64 (876)
T PRK13767 40 AIPLIHEGKNVLI--SSPTGSGKTLAA 64 (876)
T ss_pred HHHHHHcCCCEEE--ECCCCCcHHHHH
Confidence 3455678988654 569999999874
No 325
>PRK10867 signal recognition particle protein; Provisional
Probab=24.13 E-value=68 Score=38.28 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=15.8
Q ss_pred cccEEeeccCCCCcceecc
Q 002104 175 NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM~ 193 (966)
...|+..|.+|||||.|..
T Consensus 100 p~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 4567888999999999864
No 326
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=24.08 E-value=37 Score=38.68 Aligned_cols=27 Identities=44% Similarity=0.650 Sum_probs=22.9
Q ss_pred HH-HHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VI-KSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV-~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
+| .++-+||.--|++.|.||.|||..|
T Consensus 32 LV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 32 LVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 44 4666999999999999999998765
No 327
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=24.08 E-value=30 Score=42.07 Aligned_cols=14 Identities=36% Similarity=0.880 Sum_probs=0.0
Q ss_pred EEeeccCCCCccee
Q 002104 178 IFAYGQTGTGKSFT 191 (966)
Q Consensus 178 IfAYGQTGSGKTyT 191 (966)
|+-||++|+|||++
T Consensus 219 ILLyGPPGTGKT~L 232 (512)
T TIGR03689 219 VLLYGPPGCGKTLI 232 (512)
T ss_pred eEEECCCCCcHHHH
No 328
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=24.06 E-value=34 Score=33.83 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=13.1
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.|.-+|++|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999998654
No 329
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=24.02 E-value=34 Score=34.32 Aligned_cols=16 Identities=38% Similarity=0.602 Sum_probs=13.4
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.|+..|..|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677999999999865
No 330
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=23.99 E-value=50 Score=41.23 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=22.4
Q ss_pred hHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 156 QDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 156 QedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
|.+++..|...+. + +..+++..+||||||+..
T Consensus 2 Q~~~~~~i~~al~---~--~~~lliEA~TGtGKTlAY 33 (636)
T TIGR03117 2 QALFYLNCLTSLR---Q--KRIGMLEASTGVGKTLAM 33 (636)
T ss_pred HHHHHHHHHHHHh---c--CCeEEEEcCCCCcHHHHH
Confidence 6777766544332 2 356888999999999664
No 331
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=23.76 E-value=37 Score=33.16 Aligned_cols=21 Identities=29% Similarity=0.437 Sum_probs=16.3
Q ss_pred cCCcccEEeeccCCCCcceec
Q 002104 172 DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 172 dGyNvcIfAYGQTGSGKTyTM 192 (966)
...+.-|+-+|..||||++..
T Consensus 18 a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHHH
T ss_pred hCCCCcEEEEcCCCCCHHHHH
Confidence 366778899999999997653
No 332
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=23.55 E-value=1.5e+02 Score=26.80 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHh
Q 002104 445 NLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLE 486 (966)
Q Consensus 445 ~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeql~ 486 (966)
.|..++..|-....+++.|...|+..+..+..+...+.+..+
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555444444433
No 333
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=23.54 E-value=42 Score=43.87 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=21.9
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
..|..++.+.+.+ +..|..||||||+|
T Consensus 353 ~Av~~il~s~~v~-vv~G~AGTGKTT~l 379 (988)
T PRK13889 353 DALAHVTDGRDLG-VVVGYAGTGKSAML 379 (988)
T ss_pred HHHHHHhcCCCeE-EEEeCCCCCHHHHH
Confidence 4677788877754 58899999999987
No 334
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.30 E-value=52 Score=39.86 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=25.2
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcC-CcccEEeeccCCCCcceec
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDG-YNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdG-yNvcIfAYGQTGSGKTyTM 192 (966)
+||.|.+ |+.|-..+...+ -.| ..-.++-||+.|+|||.+.
T Consensus 14 ~f~divG----q~~v~~~L~~~~---~~~~l~ha~Lf~Gp~G~GKTt~A 55 (509)
T PRK14958 14 CFQEVIG----QAPVVRALSNAL---DQQYLHHAYLFTGTRGVGKTTIS 55 (509)
T ss_pred CHHHhcC----CHHHHHHHHHHH---HhCCCCeeEEEECCCCCCHHHHH
Confidence 4565554 555554433333 233 3446789999999999754
No 335
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=23.21 E-value=50 Score=32.79 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=15.4
Q ss_pred CCcccEEeeccCCCCcceec
Q 002104 173 GYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 173 GyNvcIfAYGQTGSGKTyTM 192 (966)
+....|...|++|.||+..+
T Consensus 100 ~~~~~v~~~G~~nvGKStli 119 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSII 119 (157)
T ss_pred ccceEEEEEeCCCCChHHHH
Confidence 34556777999999998764
No 336
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=23.19 E-value=3.2e+02 Score=28.31 Aligned_cols=45 Identities=16% Similarity=0.449 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH
Q 002104 440 EVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQ 484 (966)
Q Consensus 440 ~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeq 484 (966)
+-.++-|++++++|++.+..+...|++|...+..+...+..++..
T Consensus 93 ~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 93 DEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888888888888887777776666555443
No 337
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=23.14 E-value=60 Score=40.16 Aligned_cols=40 Identities=20% Similarity=0.372 Sum_probs=25.1
Q ss_pred eCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 150 FHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 150 F~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
|.+...|+.+..++ +...-.....-++..|+||||||...
T Consensus 234 f~lt~~Q~~ai~~I---~~~~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 234 FKLTRAQKRVVKEI---LQDLKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCCCHHHHHHHHHH---HHHhccCCCccEEEECCCCCcHHHHH
Confidence 34555677766553 22222333345799999999999864
No 338
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.05 E-value=2.3e+02 Score=26.24 Aligned_cols=43 Identities=23% Similarity=0.377 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q 002104 443 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQL 485 (966)
Q Consensus 443 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeql 485 (966)
+.+|+++...|..|...++...+.|+.+-++++.+...+++.+
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444443
No 339
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=23.01 E-value=49 Score=40.34 Aligned_cols=43 Identities=21% Similarity=0.518 Sum_probs=28.2
Q ss_pred eeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcce
Q 002104 143 NYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSF 190 (966)
Q Consensus 143 ~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTy 190 (966)
.|.||.+++.+. ....+...+.. +...+..|+-+|.+||||++
T Consensus 208 ~~~f~~iiG~S~----~m~~~~~~i~~-~A~~~~pVLI~GE~GTGKe~ 250 (526)
T TIGR02329 208 RYRLDDLLGASA----PMEQVRALVRL-YARSDATVLILGESGTGKEL 250 (526)
T ss_pred ccchhheeeCCH----HHHHHHHHHHH-HhCCCCcEEEECCCCcCHHH
Confidence 377887776543 33333333333 34568899999999999954
No 340
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=23.00 E-value=1.7e+02 Score=33.89 Aligned_cols=48 Identities=21% Similarity=0.222 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHhhhcC
Q 002104 443 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLEVSHS 490 (966)
Q Consensus 443 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeql~~~~~ 490 (966)
+--|+.++.+|++++..+..|++.+++.|.-..+.+.-+|.-|...+.
T Consensus 177 v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddani 224 (323)
T PF08537_consen 177 VILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDANI 224 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 345677778888888888888888888887777777677776666543
No 341
>PRK14532 adenylate kinase; Provisional
Probab=22.99 E-value=37 Score=34.62 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=12.8
Q ss_pred cEEeeccCCCCccee
Q 002104 177 CIFAYGQTGTGKSFT 191 (966)
Q Consensus 177 cIfAYGQTGSGKTyT 191 (966)
.|+..|.+|||||+.
T Consensus 2 ~i~~~G~pGsGKsT~ 16 (188)
T PRK14532 2 NLILFGPPAAGKGTQ 16 (188)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999864
No 342
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=22.98 E-value=51 Score=40.32 Aligned_cols=42 Identities=24% Similarity=0.421 Sum_probs=26.6
Q ss_pred eecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcce
Q 002104 144 YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSF 190 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTy 190 (966)
|.|+.+++.+. ....+...+.. +...+..|+-+|.+||||++
T Consensus 216 ~~f~~iiG~S~----~m~~~~~~i~~-~A~s~~pVLI~GE~GTGKe~ 257 (538)
T PRK15424 216 YVLGDLLGQSP----QMEQVRQTILL-YARSSAAVLIQGETGTGKEL 257 (538)
T ss_pred cchhheeeCCH----HHHHHHHHHHH-HhCCCCcEEEECCCCCCHHH
Confidence 56666666433 22333333333 35568899999999999964
No 343
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=22.98 E-value=49 Score=38.10 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=24.4
Q ss_pred eCCCCChHHHHHh--hHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 150 FHPGSSQDEVFSE--VEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 150 F~p~asQedVF~e--V~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
+-|...-.-+|.. +..++..+.. +.-|+-.|.+|+|||...
T Consensus 39 ~~p~~d~~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 39 HVPDIDPAYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHH
Confidence 3344444444442 2444444433 445889999999998754
No 344
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=22.92 E-value=32 Score=40.64 Aligned_cols=18 Identities=44% Similarity=0.529 Sum_probs=15.4
Q ss_pred ccEEeeccCCCCcceecc
Q 002104 176 ACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM~ 193 (966)
-.|.-.|++|+|||+|+.
T Consensus 207 ~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLV 224 (407)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457788999999999985
No 345
>PRK10865 protein disaggregation chaperone; Provisional
Probab=22.87 E-value=38 Score=43.53 Aligned_cols=43 Identities=28% Similarity=0.418 Sum_probs=29.5
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceeccc
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 194 (966)
.+|-|++. +. ++..+|+-+.......++-||++|+|||+...|
T Consensus 176 ~l~~vigr----~~---ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 176 KLDPVIGR----DE---EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred CCCcCCCC----HH---HHHHHHHHHhcCCcCceEEECCCCCCHHHHHHH
Confidence 45666664 32 256666655555555677889999999998875
No 346
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=22.85 E-value=1.2e+02 Score=37.37 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=9.8
Q ss_pred CCchhhhhhhhhhhh
Q 002104 886 PSPLTLRSQRALFMN 900 (966)
Q Consensus 886 ~~~~~~~~~~~~~~~ 900 (966)
++++.+|.|-.||..
T Consensus 491 sDll~mRRqGRl~wE 505 (907)
T KOG2264|consen 491 SDLLEMRRQGRLFWE 505 (907)
T ss_pred hhHHHHHhhhhhhHH
Confidence 456667777766664
No 347
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=22.82 E-value=50 Score=41.81 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=19.7
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
..+..+++|.|+.+. -+||||||...
T Consensus 43 ~ai~~il~G~nvvv~--apTGSGKTla~ 68 (742)
T TIGR03817 43 RAAELAHAGRHVVVA--TGTASGKSLAY 68 (742)
T ss_pred HHHHHHHCCCCEEEE--CCCCCcHHHHH
Confidence 345677899996554 58999999864
No 348
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.63 E-value=1.9e+02 Score=32.01 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHhh
Q 002104 445 NLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLEV 487 (966)
Q Consensus 445 ~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeql~~ 487 (966)
+++.+..+|.+|+.+++.+.++++++|+.+..+.+.+++.++.
T Consensus 146 E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 146 ELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK 188 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555566666666666677777777777777666554
No 349
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=22.57 E-value=34 Score=40.57 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=16.2
Q ss_pred cccEEeeccCCCCcceecc
Q 002104 175 NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM~ 193 (966)
...|.-.|++|+|||+|+-
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3568889999999999984
No 350
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.50 E-value=52 Score=40.97 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=26.6
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCCc-ccEEeeccCCCCcceec
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYN-ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGyN-vcIfAYGQTGSGKTyTM 192 (966)
+||.|.+ |+.+...+..++ -.|.- -.++-||..|+|||++.
T Consensus 14 ~f~dviG----Qe~vv~~L~~~l---~~~rl~ha~Lf~Gp~GvGKTtlA 55 (618)
T PRK14951 14 SFSEMVG----QEHVVQALTNAL---TQQRLHHAYLFTGTRGVGKTTVS 55 (618)
T ss_pred CHHHhcC----cHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHH
Confidence 5677765 666655433332 23332 45788999999999876
No 351
>PRK04040 adenylate kinase; Provisional
Probab=22.47 E-value=38 Score=35.49 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=13.6
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.|+.+|.+|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4788999999999765
No 352
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=22.42 E-value=48 Score=41.77 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCcccEEeeccCCCCcceeccc
Q 002104 164 EPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 164 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 194 (966)
..+++-+..+....++-||++|+|||+...|
T Consensus 192 ~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 192 ERTIQVLCRRKKNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHHH
Confidence 4555555555556778999999999998754
No 353
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=22.18 E-value=34 Score=42.71 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=16.5
Q ss_pred cccEEeeccCCCCcceecc
Q 002104 175 NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM~ 193 (966)
|.-++..|.||||||++|-
T Consensus 434 ~~n~~I~G~tGsGKS~~~~ 452 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLLN 452 (785)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 6678889999999999873
No 354
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=22.14 E-value=57 Score=34.33 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=19.2
Q ss_pred HHHHhc-CC--cccEEeeccCCCCcceec
Q 002104 167 IKSVLD-GY--NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 167 V~svLd-Gy--NvcIfAYGQTGSGKTyTM 192 (966)
++.++. |+ ..++.-+|++|+|||+..
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 456663 54 457888999999998754
No 355
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=22.12 E-value=54 Score=39.45 Aligned_cols=42 Identities=14% Similarity=0.287 Sum_probs=26.7
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCccee
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyT 191 (966)
.|+.+.+....=..+++ .|.. +...+..|+-+|.+||||++.
T Consensus 185 ~~~~iig~s~~~~~~~~----~i~~-~a~~~~pVlI~Ge~GtGK~~~ 226 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKK----EIEV-VAASDLNVLILGETGVGKELV 226 (509)
T ss_pred cCCceeecCHHHHHHHH----HHHH-HhCCCCcEEEECCCCccHHHH
Confidence 56666664433333333 3333 345688999999999999653
No 356
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=22.11 E-value=1.2e+02 Score=28.30 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002104 450 MKKIEEERLRVRGEIENLSEKLEALTR 476 (966)
Q Consensus 450 ik~LeeE~~~lr~EIe~Lk~~Le~l~~ 476 (966)
+.++.+|+.+|+.+|++|+.+|+++.+
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677788888888888877776554
No 357
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=21.98 E-value=62 Score=36.07 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=18.6
Q ss_pred HHHHhcCC---cccEEeeccCCCCcceec
Q 002104 167 IKSVLDGY---NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 167 V~svLdGy---NvcIfAYGQTGSGKTyTM 192 (966)
++.+|.|- ...+.-||.+|||||...
T Consensus 84 lD~~l~GGi~~g~i~ei~G~~g~GKT~l~ 112 (310)
T TIGR02236 84 LDELLGGGIETQAITEVFGEFGSGKTQIC 112 (310)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 45556543 456789999999998754
No 358
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.97 E-value=56 Score=37.16 Aligned_cols=41 Identities=20% Similarity=0.416 Sum_probs=25.2
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCC-cccEEeeccCCCCcceec
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGY-NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGy-NvcIfAYGQTGSGKTyTM 192 (966)
+||.|.+ |+++.+. +...+-.|. ...++-||+.|+|||++.
T Consensus 15 ~~~~iig----~~~~~~~---l~~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 15 TFDDVVG----QSHITNT---LLNAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred cHHhcCC----cHHHHHH---HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 4555543 4444433 333333454 347888999999999776
No 359
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=21.95 E-value=1.9e+02 Score=30.52 Aligned_cols=11 Identities=55% Similarity=0.486 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 002104 358 LSALGDVIYAL 368 (966)
Q Consensus 358 LsALG~VI~AL 368 (966)
|.|+..|=..|
T Consensus 30 L~AFeEvg~~L 40 (161)
T TIGR02894 30 LSAFEEVGRAL 40 (161)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 360
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=21.92 E-value=1.7e+02 Score=36.55 Aligned_cols=42 Identities=26% Similarity=0.561 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH
Q 002104 443 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQ 484 (966)
Q Consensus 443 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeq 484 (966)
+..+...++.|+.|+..|+.++++|+..++.|+.+...+...
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~ 465 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRRE 465 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555444444444444333
No 361
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=21.63 E-value=57 Score=38.85 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=25.4
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCCc-ccEEeeccCCCCcceec
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYN-ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGyN-vcIfAYGQTGSGKTyTM 192 (966)
+||.|++ |+.+-. .+...+-.|.- -+++-||+.|+|||.+.
T Consensus 15 ~~~diiG----q~~~v~---~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 15 TFSEILG----QDAVVA---VLKNALRFNRAAHAYLFSGIRGTGKTTLA 56 (451)
T ss_pred CHHHhcC----cHHHHH---HHHHHHHcCCCceEEEEEcCCCCCHHHHH
Confidence 5677665 444433 33333334543 45677999999999876
No 362
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=21.60 E-value=45 Score=37.84 Aligned_cols=43 Identities=28% Similarity=0.505 Sum_probs=29.0
Q ss_pred cCCc--ccEEeeccCCCCcceecc--------------cCC---CCCCcHHHHHHHHHHHHH
Q 002104 172 DGYN--ACIFAYGQTGTGKSFTME--------------GTP---DSPGIVPRAIEAIFKQAM 214 (966)
Q Consensus 172 dGyN--vcIfAYGQTGSGKTyTM~--------------G~~---e~pGIIPRale~LF~~i~ 214 (966)
-|.. -.|+.||+.|+|||..-- |+. .--|-=.|.+++||+.+.
T Consensus 206 lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~mar 267 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMAR 267 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhc
Confidence 4554 358999999999986542 211 112555789999998653
No 363
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=21.42 E-value=35 Score=36.08 Aligned_cols=16 Identities=44% Similarity=0.536 Sum_probs=13.5
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.|+-.|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999753
No 364
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=21.29 E-value=54 Score=41.56 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=20.8
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceeccc
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM~G 194 (966)
.|..++.+ +..++-.|..|+||||+|-+
T Consensus 360 Av~~i~~s-~~~~il~G~aGTGKTtll~~ 387 (744)
T TIGR02768 360 AVRHVTGS-GDIAVVVGRAGTGKSTMLKA 387 (744)
T ss_pred HHHHHhcC-CCEEEEEecCCCCHHHHHHH
Confidence 55666665 34567889999999998853
No 365
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=21.25 E-value=1.5e+02 Score=34.72 Aligned_cols=61 Identities=25% Similarity=0.572 Sum_probs=40.8
Q ss_pred eeeCCCCChHHHHHhhHHHHHHHhcCCc---ccEEeeccCCCCcc---------------eecccCC--CCC-CcHHHHH
Q 002104 148 KVFHPGSSQDEVFSEVEPVIKSVLDGYN---ACIFAYGQTGTGKS---------------FTMEGTP--DSP-GIVPRAI 206 (966)
Q Consensus 148 ~VF~p~asQedVF~eV~PLV~svLdGyN---vcIfAYGQTGSGKT---------------yTM~G~~--e~p-GIIPRal 206 (966)
.+|+- ++.-+.+-..+.++-.|+. -.+.-.|++|+||| ||+.|.| ++| +|+|.-+
T Consensus 62 ~~~G~----~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L~P~~~ 137 (358)
T PF08298_consen 62 EFYGM----EETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHLFPKEL 137 (358)
T ss_pred cccCc----HHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhhCCHhH
Confidence 56763 3333333335566666664 46888999999997 6667765 333 8889888
Q ss_pred HHHHHH
Q 002104 207 EAIFKQ 212 (966)
Q Consensus 207 e~LF~~ 212 (966)
...|..
T Consensus 138 r~~~~~ 143 (358)
T PF08298_consen 138 RREFED 143 (358)
T ss_pred HHHHHH
Confidence 888753
No 366
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=21.23 E-value=81 Score=37.69 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=16.3
Q ss_pred cccEEeeccCCCCcceecc
Q 002104 175 NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM~ 193 (966)
...|+-.|.+|+|||+|..
T Consensus 100 ~~vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCT 118 (429)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4678899999999999974
No 367
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=21.14 E-value=29 Score=37.23 Aligned_cols=13 Identities=38% Similarity=0.409 Sum_probs=11.1
Q ss_pred eeccCCCCcceec
Q 002104 180 AYGQTGTGKSFTM 192 (966)
Q Consensus 180 AYGQTGSGKTyTM 192 (966)
--|++|||||+++
T Consensus 4 I~G~sGSGKTTla 16 (220)
T cd02025 4 IAGSVAVGKSTTA 16 (220)
T ss_pred eeCCCCCCHHHHH
Confidence 3499999999986
No 368
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=21.14 E-value=70 Score=39.50 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=28.1
Q ss_pred cEEeeccCCCCcceeccc---CCC---CCCcHHHHHHHHHHHHHh
Q 002104 177 CIFAYGQTGTGKSFTMEG---TPD---SPGIVPRAIEAIFKQAME 215 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM~G---~~e---~pGIIPRale~LF~~i~e 215 (966)
.||..|+|.|||||--.- +.. -.|=+-....++|++.+.
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na 237 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNA 237 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhh
Confidence 399999999999997532 221 246677777888887643
No 369
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=21.14 E-value=42 Score=38.72 Aligned_cols=74 Identities=23% Similarity=0.398 Sum_probs=46.5
Q ss_pred ecceeeCCCCChHHHHHhh-HHH-HHHHhcCCc---ccEEeeccCCCCcceeccc--CC---------------CCCCcH
Q 002104 145 SFDKVFHPGSSQDEVFSEV-EPV-IKSVLDGYN---ACIFAYGQTGTGKSFTMEG--TP---------------DSPGIV 202 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV-~PL-V~svLdGyN---vcIfAYGQTGSGKTyTM~G--~~---------------e~pGII 202 (966)
.++-|-+-+..-+.+=+.| -|+ ..++|.|.- ..|+-||+.|+||+|.--. +. ..-|--
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGES 210 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 210 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccH
Confidence 4455555444444444443 453 356676664 5799999999999995421 10 113777
Q ss_pred HHHHHHHHHHHHhcCC
Q 002104 203 PRAIEAIFKQAMESNH 218 (966)
Q Consensus 203 PRale~LF~~i~e~~~ 218 (966)
-+.+..||..+.+...
T Consensus 211 EkLVknLFemARe~kP 226 (439)
T KOG0739|consen 211 EKLVKNLFEMARENKP 226 (439)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 7899999998765433
No 370
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=21.12 E-value=82 Score=41.46 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=13.8
Q ss_pred cccEEeeccCCCCcceec
Q 002104 175 NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM 192 (966)
.+.+.-+|+||||||..+
T Consensus 30 ~~l~~I~G~tGaGKStil 47 (1047)
T PRK10246 30 NGLFAITGPTGAGKTTLL 47 (1047)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 345567899999998754
No 371
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=21.00 E-value=44 Score=37.85 Aligned_cols=14 Identities=43% Similarity=0.930 Sum_probs=12.5
Q ss_pred cEEeeccCCCCcce
Q 002104 177 CIFAYGQTGTGKSF 190 (966)
Q Consensus 177 cIfAYGQTGSGKTy 190 (966)
.++.||+.|+|||.
T Consensus 207 GvLmYGPPGTGKTl 220 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTL 220 (424)
T ss_pred ceEeeCCCCCcHHH
Confidence 58999999999974
No 372
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=21.00 E-value=45 Score=42.75 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=23.4
Q ss_pred hHHHHHHHhcCCcccEEeeccCCCCcceeccc
Q 002104 163 VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 163 V~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 194 (966)
+..+++-+..+....++-+|++|+|||+...|
T Consensus 182 i~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 182 IRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 56666655555555566799999999998875
No 373
>PRK06762 hypothetical protein; Provisional
Probab=20.90 E-value=42 Score=33.39 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=12.1
Q ss_pred cEEeeccCCCCccee
Q 002104 177 CIFAYGQTGTGKSFT 191 (966)
Q Consensus 177 cIfAYGQTGSGKTyT 191 (966)
.|.-.|..|||||+.
T Consensus 4 li~i~G~~GsGKST~ 18 (166)
T PRK06762 4 LIIIRGNSGSGKTTI 18 (166)
T ss_pred EEEEECCCCCCHHHH
Confidence 466789999999763
No 374
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=20.87 E-value=80 Score=37.60 Aligned_cols=36 Identities=25% Similarity=0.488 Sum_probs=28.4
Q ss_pred HHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 157 DEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 157 edVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
+..-+.+..-++.+-+|....-|..|.-||||||.+
T Consensus 31 ~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 31 EREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 344444555567788999999999999999999975
No 375
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=20.85 E-value=2e+02 Score=28.42 Aligned_cols=32 Identities=31% Similarity=0.493 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002104 443 MKNLQQKMKKIEEERLRVRGEIENLSEKLEAL 474 (966)
Q Consensus 443 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l 474 (966)
+..|++.+.++.+|+..|+-|.+.|++.|+++
T Consensus 24 l~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 24 LGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555543
No 376
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=20.82 E-value=48 Score=41.31 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=15.0
Q ss_pred ccEEeeccCCCCcceec
Q 002104 176 ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM 192 (966)
.-++.+|+||||||.++
T Consensus 212 ~H~lv~ApTgsGKgvg~ 228 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSV 228 (623)
T ss_pred ceEEEEeCCCCCcccee
Confidence 45899999999999977
No 377
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=20.79 E-value=46 Score=38.98 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=0.0
Q ss_pred cCCcccEEeeccCCCCcceec
Q 002104 172 DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 172 dGyNvcIfAYGQTGSGKTyTM 192 (966)
.|..-+|++.|+.|+|||.-+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred cCCceEEEEecCCCCchhHHH
No 378
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=20.75 E-value=40 Score=32.84 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=13.9
Q ss_pred cEEeeccCCCCcceecc
Q 002104 177 CIFAYGQTGTGKSFTME 193 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM~ 193 (966)
.+.-.|++|||||.++.
T Consensus 17 ~v~I~GpSGsGKSTLl~ 33 (107)
T cd00820 17 GVLITGDSGIGKTELAL 33 (107)
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 46678999999998763
No 379
>PRK03839 putative kinase; Provisional
Probab=20.71 E-value=42 Score=34.01 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=12.0
Q ss_pred EEeeccCCCCccee
Q 002104 178 IFAYGQTGTGKSFT 191 (966)
Q Consensus 178 IfAYGQTGSGKTyT 191 (966)
|+-.|..|||||+.
T Consensus 3 I~l~G~pGsGKsT~ 16 (180)
T PRK03839 3 IAITGTPGVGKTTV 16 (180)
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999864
No 380
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=20.70 E-value=68 Score=34.42 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=18.1
Q ss_pred HHHHhc-CC--cccEEeeccCCCCcce
Q 002104 167 IKSVLD-GY--NACIFAYGQTGTGKSF 190 (966)
Q Consensus 167 V~svLd-Gy--NvcIfAYGQTGSGKTy 190 (966)
++.++. |+ ..+++.+|.+|||||.
T Consensus 10 LD~~l~GG~~~gs~~lI~G~pGsGKT~ 36 (237)
T TIGR03877 10 MDEILHGGIPERNVVLLSGGPGTGKSI 36 (237)
T ss_pred HHHHhcCCCcCCeEEEEEcCCCCCHHH
Confidence 456664 44 5678999999999975
No 381
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=20.65 E-value=86 Score=36.19 Aligned_cols=40 Identities=30% Similarity=0.580 Sum_probs=28.5
Q ss_pred cEEeeccCCCCcceecc--------------cCC---CCCCcHHHHHHHHHHHHHhc
Q 002104 177 CIFAYGQTGTGKSFTME--------------GTP---DSPGIVPRAIEAIFKQAMES 216 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM~--------------G~~---e~pGIIPRale~LF~~i~e~ 216 (966)
-|+-||..|+|||..-- |+. ..-|==|+.+++||+.+.+.
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~ 277 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 277 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhc
Confidence 58899999999985432 211 12366699999999977554
No 382
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=20.64 E-value=51 Score=39.06 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=20.0
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
..|..++.|.++..+ .|||||||-+.
T Consensus 90 ~aiP~~L~g~dvIgl--AeTGSGKT~af 115 (476)
T KOG0330|consen 90 EAIPVALGGRDVIGL--AETGSGKTGAF 115 (476)
T ss_pred hhcchhhCCCcEEEE--eccCCCchhhh
Confidence 456678899987544 59999999775
No 383
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=20.54 E-value=55 Score=40.43 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=18.5
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
.|..++.. ...+..|..|||||||+.
T Consensus 153 A~~~al~~--~~~vitGgpGTGKTt~v~ 178 (586)
T TIGR01447 153 AVALALKS--NFSLITGGPGTGKTTTVA 178 (586)
T ss_pred HHHHHhhC--CeEEEEcCCCCCHHHHHH
Confidence 45555553 445667999999999974
No 384
>PRK00300 gmk guanylate kinase; Provisional
Probab=20.46 E-value=40 Score=34.74 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=13.5
Q ss_pred ccEEeeccCCCCcceec
Q 002104 176 ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM 192 (966)
-.|.-.|++|||||..+
T Consensus 6 ~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45778899999998644
No 385
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=20.44 E-value=41 Score=33.82 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=13.1
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.|.-.|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999998743
No 386
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.44 E-value=70 Score=37.24 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=24.0
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHh-cCCc-ccEEeeccCCCCcceec
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVL-DGYN-ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svL-dGyN-vcIfAYGQTGSGKTyTM 192 (966)
.||.|++ |+.+-. .+..++ .|.- -.++-||+.|+|||.+.
T Consensus 14 ~~~eiiG----q~~~~~----~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A 55 (397)
T PRK14955 14 KFADITA----QEHITR----TIQNSLRMGRVGHGYIFSGLRGVGKTTAA 55 (397)
T ss_pred cHhhccC----hHHHHH----HHHHHHHhCCcceeEEEECCCCCCHHHHH
Confidence 4666665 444433 333333 4433 24777999999998654
No 387
>PRK14530 adenylate kinase; Provisional
Probab=20.41 E-value=43 Score=35.18 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=12.9
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.|+-.|.+|||||+..
T Consensus 5 ~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 5 RILLLGAPGAGKGTQS 20 (215)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3777999999998643
No 388
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.40 E-value=1.5e+02 Score=32.09 Aligned_cols=35 Identities=11% Similarity=0.328 Sum_probs=18.9
Q ss_pred cchHHHHHhhHHHHHhhhhhhhhhhhhHHHHHHHH
Q 002104 4 MDSKQSVHKLGETIHSLLGLKAHLTSSWVKSVCDI 38 (966)
Q Consensus 4 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~ 38 (966)
|....-+.++-..|..|....+++...|.+...++
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l 123 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEM 123 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44444455555555555555555555566555544
No 389
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=20.34 E-value=70 Score=41.09 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=14.9
Q ss_pred cccEEeeccCCCCcceec
Q 002104 175 NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM 192 (966)
|..++..|+||||||..+
T Consensus 17 ~~~vIi~a~TGSGKTT~v 34 (819)
T TIGR01970 17 HPQVVLEAPPGAGKSTAV 34 (819)
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 456788999999999865
No 390
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=20.11 E-value=4.4e+02 Score=24.16 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002104 444 KNLQQKMKKIEEERLRVRGEIENLSEKLEALT 475 (966)
Q Consensus 444 ~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~ 475 (966)
..|..++..+-+.+..|+.++++|+++-.++.
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34555555555555555555555555444333
No 391
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.09 E-value=2.9e+02 Score=31.24 Aligned_cols=44 Identities=20% Similarity=0.418 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHh
Q 002104 443 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLE 486 (966)
Q Consensus 443 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeql~ 486 (966)
+.++++....++.++..|..+|+++..++..+..++...+..++
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik 83 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIK 83 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555544444444444444444444444333
No 392
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.08 E-value=64 Score=39.26 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=23.6
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCC-cccEEeeccCCCCcceec
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGY-NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGy-NvcIfAYGQTGSGKTyTM 192 (966)
+|+.|.+ |+.+-..+... +-.|. .-.++-||+.|+|||.+.
T Consensus 14 ~f~divG----q~~v~~~L~~~---i~~~~~~ha~Lf~Gp~G~GKTt~A 55 (527)
T PRK14969 14 SFSELVG----QEHVVRALTNA---LEQQRLHHAYLFTGTRGVGKTTLA 55 (527)
T ss_pred cHHHhcC----cHHHHHHHHHH---HHcCCCCEEEEEECCCCCCHHHHH
Confidence 4555553 45554433322 22333 345677999999999644
Done!