Query 002104
Match_columns 966
No_of_seqs 455 out of 2220
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 12:31:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002104.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002104hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u06_A Protein claret segregat 100.0 1.1E-90 3.9E-95 779.7 31.0 358 67-434 25-391 (412)
2 4etp_A Kinesin-like protein KA 100.0 8.3E-91 2.8E-95 779.2 29.3 363 66-430 24-402 (403)
3 3cob_A Kinesin heavy chain-lik 100.0 1.4E-89 5E-94 761.4 28.3 332 97-433 1-335 (369)
4 2rep_A Kinesin-like protein KI 100.0 2.8E-88 9.6E-93 752.7 28.5 334 89-425 10-376 (376)
5 2h58_A Kinesin-like protein KI 100.0 5.1E-88 1.7E-92 739.5 30.1 325 98-427 1-330 (330)
6 3lre_A Kinesin-like protein KI 100.0 2E-87 7E-92 741.0 27.3 325 92-425 1-355 (355)
7 3t0q_A AGR253WP; kinesin, alph 100.0 6.9E-87 2.4E-91 735.3 30.7 331 97-429 1-348 (349)
8 2vvg_A Kinesin-2; motor protei 100.0 3.3E-87 1.1E-91 738.1 25.1 324 100-432 3-342 (350)
9 3bfn_A Kinesin-like protein KI 100.0 5.1E-87 1.8E-91 744.6 25.1 329 95-431 15-353 (388)
10 1goj_A Kinesin, kinesin heavy 100.0 2E-86 6.8E-91 733.2 28.2 327 98-432 3-337 (355)
11 2y65_A Kinesin, kinesin heavy 100.0 5.1E-87 1.7E-91 740.2 23.4 324 98-432 8-340 (365)
12 1bg2_A Kinesin; motor protein, 100.0 5.5E-87 1.9E-91 730.0 22.5 316 98-425 4-325 (325)
13 1f9v_A Kinesin-like protein KA 100.0 6.3E-86 2.2E-90 727.2 28.9 328 99-430 1-346 (347)
14 1x88_A Kinesin-like protein KI 100.0 1.1E-86 3.7E-91 736.2 21.4 329 98-431 5-356 (359)
15 1t5c_A CENP-E protein, centrom 100.0 9E-86 3.1E-90 726.5 28.3 324 100-433 3-336 (349)
16 3b6u_A Kinesin-like protein KI 100.0 4.4E-86 1.5E-90 734.1 24.5 332 95-433 15-361 (372)
17 2owm_A Nckin3-434, related to 100.0 1.5E-85 5E-90 744.1 28.8 332 96-432 33-420 (443)
18 2zfi_A Kinesin-like protein KI 100.0 1.2E-85 4.2E-90 729.4 25.6 324 100-430 3-359 (366)
19 2wbe_C Bipolar kinesin KRP-130 100.0 5.9E-86 2E-90 733.5 22.9 329 97-432 19-368 (373)
20 2heh_A KIF2C protein; kinesin, 100.0 9.1E-86 3.1E-90 734.4 22.4 341 72-427 23-384 (387)
21 4a14_A Kinesin, kinesin-like p 100.0 5E-85 1.7E-89 719.2 26.0 316 100-423 10-344 (344)
22 1v8k_A Kinesin-like protein KI 100.0 5.7E-85 2E-89 732.3 23.3 343 72-429 43-406 (410)
23 3gbj_A KIF13B protein; kinesin 100.0 1.1E-84 3.7E-89 719.1 24.7 318 101-424 1-349 (354)
24 3nwn_A Kinesin-like protein KI 100.0 4.1E-84 1.4E-88 715.6 25.9 320 98-425 21-359 (359)
25 2nr8_A Kinesin-like protein KI 100.0 1.1E-83 3.7E-88 712.1 26.1 322 95-425 17-358 (358)
26 1ry6_A Internal kinesin; kines 100.0 2.1E-83 7.1E-88 710.2 24.3 316 102-429 1-335 (360)
27 3dc4_A Kinesin-like protein NO 100.0 2.6E-81 8.8E-86 689.9 25.9 306 98-428 19-338 (344)
28 4h1g_A Maltose binding protein 100.0 2.2E-78 7.6E-83 718.9 31.8 331 90-427 363-713 (715)
29 2o0a_A S.cerevisiae chromosome 100.0 6.1E-33 2.1E-37 296.2 9.0 279 81-427 4-291 (298)
30 3kin_B Kinesin heavy chain; mo 99.9 7E-27 2.4E-31 222.3 9.5 115 355-475 1-116 (117)
31 2kin_B Kinesin; motor protein, 99.9 7.6E-27 2.6E-31 216.6 4.9 82 351-432 1-83 (100)
32 4etp_B Spindle POLE BODY-assoc 98.0 7E-05 2.4E-09 81.7 14.7 268 74-407 32-310 (333)
33 3ec2_A DNA replication protein 94.5 0.0077 2.6E-07 58.6 0.4 52 142-193 5-56 (180)
34 2w58_A DNAI, primosome compone 93.5 0.024 8.2E-07 55.9 1.8 51 142-192 20-71 (202)
35 4b4t_K 26S protease regulatory 91.8 0.9 3.1E-05 51.7 11.9 74 144-217 169-265 (428)
36 2qgz_A Helicase loader, putati 91.1 0.07 2.4E-06 57.5 1.9 51 143-193 120-170 (308)
37 4b4t_J 26S protease regulatory 90.3 1.7 5.9E-05 49.2 12.2 74 144-217 145-241 (405)
38 4gkp_A Spindle POLE BODY-assoc 89.1 1.4 4.9E-05 47.6 9.8 264 92-427 4-271 (275)
39 3uk6_A RUVB-like 2; hexameric 86.7 0.34 1.2E-05 51.9 3.4 46 143-192 40-87 (368)
40 4b4t_M 26S protease regulatory 86.4 3.3 0.00011 47.2 11.3 75 143-217 177-274 (434)
41 2bjv_A PSP operon transcriptio 85.5 0.24 8.3E-06 51.0 1.4 45 143-192 2-46 (265)
42 3bos_A Putative DNA replicatio 85.0 0.34 1.2E-05 47.8 2.2 47 143-193 24-70 (242)
43 4b4t_L 26S protease subunit RP 84.2 7.2 0.00025 44.5 12.7 74 144-217 178-274 (437)
44 1jbk_A CLPB protein; beta barr 83.5 0.5 1.7E-05 44.4 2.5 30 163-192 31-60 (195)
45 1l8q_A Chromosomal replication 83.0 0.54 1.9E-05 49.9 2.8 50 142-193 6-55 (324)
46 2r62_A Cell division protease 82.9 0.59 2E-05 47.9 2.9 51 142-192 6-61 (268)
47 3h4m_A Proteasome-activating n 82.7 0.52 1.8E-05 48.7 2.5 51 142-192 12-68 (285)
48 2c9o_A RUVB-like 1; hexameric 81.5 0.99 3.4E-05 50.9 4.3 46 143-192 33-80 (456)
49 2p65_A Hypothetical protein PF 80.7 0.57 2E-05 44.1 1.7 30 163-192 31-60 (187)
50 1d2n_A N-ethylmaleimide-sensit 80.4 0.62 2.1E-05 48.2 2.0 47 146-192 32-81 (272)
51 1lv7_A FTSH; alpha/beta domain 80.3 0.94 3.2E-05 46.3 3.3 47 142-192 7-62 (257)
52 1g8p_A Magnesium-chelatase 38 78.5 0.7 2.4E-05 48.9 1.7 44 142-192 19-62 (350)
53 3te6_A Regulatory protein SIR3 78.4 0.7 2.4E-05 50.6 1.7 31 162-192 31-62 (318)
54 1fnn_A CDC6P, cell division co 78.2 1.1 3.8E-05 47.8 3.2 38 155-192 21-61 (389)
55 2v1u_A Cell division control p 77.9 0.65 2.2E-05 49.3 1.2 39 154-192 22-61 (387)
56 3syl_A Protein CBBX; photosynt 76.6 1.3 4.6E-05 46.1 3.2 20 173-192 65-84 (309)
57 2z4s_A Chromosomal replication 76.0 1.1 3.7E-05 50.6 2.5 50 141-193 99-148 (440)
58 2kjq_A DNAA-related protein; s 74.9 0.96 3.3E-05 43.5 1.4 43 142-193 12-54 (149)
59 2qz4_A Paraplegin; AAA+, SPG7, 74.7 1.8 6E-05 43.8 3.4 45 144-192 3-56 (262)
60 1qde_A EIF4A, translation init 73.9 1.3 4.5E-05 43.9 2.2 24 166-191 44-67 (224)
61 1ixz_A ATP-dependent metallopr 73.9 1.2 4.1E-05 45.5 1.9 47 142-192 11-66 (254)
62 3t15_A Ribulose bisphosphate c 73.6 1.4 4.9E-05 46.7 2.5 29 164-192 21-53 (293)
63 1vec_A ATP-dependent RNA helic 72.8 1.5 5.3E-05 42.7 2.3 25 166-192 33-57 (206)
64 2gxq_A Heat resistant RNA depe 72.6 1.5 5.2E-05 42.7 2.2 24 166-191 31-54 (207)
65 3cf0_A Transitional endoplasmi 71.3 1.3 4.3E-05 47.0 1.4 50 143-192 11-66 (301)
66 2chg_A Replication factor C sm 71.3 1.8 6.3E-05 41.5 2.5 34 156-192 22-55 (226)
67 3b9p_A CG5977-PA, isoform A; A 70.6 2.1 7.2E-05 44.5 2.9 47 142-192 16-71 (297)
68 1iy2_A ATP-dependent metallopr 70.6 1.8 6E-05 45.1 2.3 47 142-192 35-90 (278)
69 1sxj_C Activator 1 40 kDa subu 70.2 1.7 5.9E-05 46.5 2.2 42 145-193 23-64 (340)
70 2qby_B CDC6 homolog 3, cell di 69.8 1.9 6.5E-05 46.1 2.4 38 155-192 24-62 (384)
71 3co5_A Putative two-component 69.7 2.4 8.4E-05 39.9 2.9 35 158-193 11-45 (143)
72 3dkp_A Probable ATP-dependent 69.7 1.9 6.5E-05 43.5 2.2 24 166-191 59-82 (245)
73 4b4t_I 26S protease regulatory 68.6 29 0.00099 39.8 11.8 43 175-217 216-275 (437)
74 3pfi_A Holliday junction ATP-d 68.5 2.5 8.5E-05 44.8 3.0 44 145-192 27-72 (338)
75 3bor_A Human initiation factor 68.5 1.3 4.3E-05 45.0 0.7 26 165-192 59-84 (237)
76 2qby_A CDC6 homolog 1, cell di 67.7 1.6 5.4E-05 46.2 1.2 37 156-192 25-62 (386)
77 3d8b_A Fidgetin-like protein 1 67.3 2.7 9.2E-05 45.8 3.0 46 143-192 80-134 (357)
78 2pl3_A Probable ATP-dependent 67.2 2.3 7.8E-05 42.7 2.2 25 166-192 55-79 (236)
79 1hqc_A RUVB; extended AAA-ATPa 66.7 3.1 0.00011 43.5 3.2 45 144-192 9-55 (324)
80 3iuy_A Probable ATP-dependent 65.4 2.4 8.3E-05 42.3 2.0 25 166-192 50-74 (228)
81 1t6n_A Probable ATP-dependent 65.3 2.6 9E-05 41.6 2.2 25 166-192 44-68 (220)
82 3ly5_A ATP-dependent RNA helic 65.1 2 6.9E-05 44.5 1.4 25 165-191 83-107 (262)
83 3vfd_A Spastin; ATPase, microt 65.0 2.8 9.6E-05 46.0 2.6 47 142-192 110-165 (389)
84 3b6e_A Interferon-induced heli 64.2 1.4 4.8E-05 42.9 -0.0 23 168-192 43-65 (216)
85 1wrb_A DJVLGB; RNA helicase, D 64.0 2.8 9.6E-05 42.6 2.2 25 166-192 53-77 (253)
86 1njg_A DNA polymerase III subu 63.6 3.5 0.00012 39.8 2.7 34 156-192 28-62 (250)
87 3n70_A Transport activator; si 63.6 4 0.00014 38.4 3.0 20 173-192 22-41 (145)
88 1xwi_A SKD1 protein; VPS4B, AA 63.5 3 0.0001 44.9 2.4 45 144-192 9-62 (322)
89 1p9r_A General secretion pathw 63.5 2.7 9.2E-05 47.5 2.1 28 166-193 158-185 (418)
90 4fcw_A Chaperone protein CLPB; 62.9 3.4 0.00012 42.9 2.6 38 155-192 21-64 (311)
91 1w5s_A Origin recognition comp 62.8 3.2 0.00011 44.7 2.4 36 157-192 28-69 (412)
92 1ofh_A ATP-dependent HSL prote 62.2 3.7 0.00013 42.3 2.8 18 175-192 50-67 (310)
93 3fmo_B ATP-dependent RNA helic 62.1 3.2 0.00011 44.2 2.2 27 166-192 122-148 (300)
94 3eie_A Vacuolar protein sortin 61.8 3 0.0001 44.5 2.1 46 143-192 14-68 (322)
95 1iqp_A RFCS; clamp loader, ext 61.7 4.3 0.00015 42.1 3.1 41 145-192 23-63 (327)
96 3fe2_A Probable ATP-dependent 61.7 3 0.0001 42.2 1.9 25 166-192 59-83 (242)
97 3eiq_A Eukaryotic initiation f 61.7 3.3 0.00011 44.4 2.3 26 165-192 69-94 (414)
98 3jvv_A Twitching mobility prot 60.8 2.8 9.6E-05 46.3 1.6 27 167-193 115-141 (356)
99 2oxc_A Probable ATP-dependent 60.7 3.5 0.00012 41.4 2.2 24 166-191 54-77 (230)
100 3pvs_A Replication-associated 60.5 3 0.0001 47.3 1.8 44 145-192 24-67 (447)
101 3ber_A Probable ATP-dependent 59.8 3.7 0.00013 42.1 2.2 25 166-192 73-97 (249)
102 1hjb_A Ccaat/enhancer binding 59.5 8.5 0.00029 35.0 4.2 45 436-480 31-75 (87)
103 1in4_A RUVB, holliday junction 59.4 4.7 0.00016 43.4 3.0 44 145-192 23-68 (334)
104 3llm_A ATP-dependent RNA helic 58.9 3.3 0.00011 42.0 1.6 26 165-192 68-93 (235)
105 3u61_B DNA polymerase accessor 58.0 5 0.00017 42.3 2.9 42 145-193 24-66 (324)
106 1q0u_A Bstdead; DEAD protein, 57.1 2.6 9E-05 41.8 0.5 24 166-191 34-57 (219)
107 3fht_A ATP-dependent RNA helic 57.1 4.5 0.00016 43.2 2.4 28 165-192 54-81 (412)
108 2j0s_A ATP-dependent RNA helic 56.4 4.2 0.00014 43.8 2.0 25 166-192 67-91 (410)
109 3pey_A ATP-dependent RNA helic 56.3 4.6 0.00016 42.7 2.2 27 166-192 35-61 (395)
110 1u0j_A DNA replication protein 56.1 5.8 0.0002 42.5 3.0 30 163-192 89-121 (267)
111 1gu4_A CAAT/enhancer binding p 55.0 17 0.00058 32.4 5.3 43 436-478 31-73 (78)
112 1gvn_B Zeta; postsegregational 54.9 8.4 0.00029 40.9 4.0 37 156-192 9-50 (287)
113 1jr3_A DNA polymerase III subu 54.9 6.5 0.00022 41.7 3.2 36 155-192 20-55 (373)
114 1sxj_D Activator 1 41 kDa subu 54.5 4.7 0.00016 42.5 1.9 42 144-192 34-75 (353)
115 1tue_A Replication protein E1; 53.8 4.7 0.00016 42.0 1.8 28 166-193 47-76 (212)
116 2ce7_A Cell division protein F 53.6 7.2 0.00025 44.9 3.4 47 142-192 11-66 (476)
117 1t2k_D Cyclic-AMP-dependent tr 53.5 31 0.001 28.9 6.4 41 436-476 17-57 (61)
118 3fmp_B ATP-dependent RNA helic 52.9 6 0.00021 44.0 2.6 26 166-191 122-147 (479)
119 3h1t_A Type I site-specific re 52.9 5.2 0.00018 46.0 2.1 29 164-193 188-216 (590)
120 2z0m_A 337AA long hypothetical 52.6 5.4 0.00018 41.2 2.0 25 166-192 24-48 (337)
121 2xdj_A Uncharacterized protein 52.5 24 0.00081 31.8 5.9 46 442-487 21-66 (83)
122 2chq_A Replication factor C sm 52.1 3 0.0001 43.2 -0.0 41 145-192 15-55 (319)
123 1s2m_A Putative ATP-dependent 52.1 5.3 0.00018 42.8 1.9 25 166-192 51-75 (400)
124 2fz4_A DNA repair protein RAD2 51.8 5.5 0.00019 40.8 1.9 24 168-193 103-126 (237)
125 1ojl_A Transcriptional regulat 51.5 7 0.00024 41.7 2.7 34 158-192 9-42 (304)
126 2i4i_A ATP-dependent RNA helic 51.4 5.8 0.0002 42.6 2.1 25 166-192 45-69 (417)
127 2zan_A Vacuolar protein sortin 51.3 4.8 0.00016 45.3 1.5 47 142-192 129-184 (444)
128 1qvr_A CLPB protein; coiled co 51.1 4.7 0.00016 49.2 1.4 44 144-194 167-210 (854)
129 2dhr_A FTSH; AAA+ protein, hex 50.9 7.1 0.00024 45.2 2.8 47 142-192 26-81 (499)
130 1jnm_A Proto-oncogene C-JUN; B 50.8 28 0.00097 29.2 5.8 42 436-477 17-58 (62)
131 2eyu_A Twitching motility prot 50.6 4.9 0.00017 42.3 1.3 20 174-193 24-43 (261)
132 2x8a_A Nuclear valosin-contain 50.6 2.7 9.3E-05 44.3 -0.6 49 144-192 7-61 (274)
133 2qp9_X Vacuolar protein sortin 50.5 4.3 0.00015 44.2 0.9 50 143-192 47-101 (355)
134 3hnw_A Uncharacterized protein 50.0 31 0.0011 33.6 6.8 40 445-484 79-118 (138)
135 2wt7_A Proto-oncogene protein 49.5 38 0.0013 28.6 6.4 40 437-476 19-58 (63)
136 4b3f_X DNA-binding protein smu 48.2 5.9 0.0002 46.7 1.6 27 166-193 197-223 (646)
137 3nmd_A CGMP dependent protein 47.7 37 0.0013 30.0 6.1 44 445-488 23-66 (72)
138 3oiy_A Reverse gyrase helicase 47.3 7.4 0.00025 42.3 2.1 24 166-191 29-52 (414)
139 3hws_A ATP-dependent CLP prote 46.9 8 0.00027 41.8 2.3 18 175-192 51-68 (363)
140 1sxj_E Activator 1 40 kDa subu 46.7 3.7 0.00013 43.6 -0.3 43 145-193 12-54 (354)
141 1xti_A Probable ATP-dependent 45.8 7.8 0.00027 41.2 2.0 25 166-192 38-62 (391)
142 3pxi_A Negative regulator of g 45.4 10 0.00035 45.4 3.1 38 155-192 495-538 (758)
143 2oap_1 GSPE-2, type II secreti 45.0 8.1 0.00028 44.7 2.1 21 171-193 258-278 (511)
144 2r44_A Uncharacterized protein 44.4 5.9 0.0002 42.0 0.7 18 176-193 47-64 (331)
145 3fho_A ATP-dependent RNA helic 44.4 8.6 0.00029 43.7 2.2 27 166-192 149-175 (508)
146 1um8_A ATP-dependent CLP prote 44.1 7.9 0.00027 41.9 1.7 18 175-192 72-89 (376)
147 4a2p_A RIG-I, retinoic acid in 43.7 9.2 0.00031 42.7 2.2 25 166-192 15-39 (556)
148 3hu3_A Transitional endoplasmi 43.7 7.6 0.00026 44.7 1.6 20 173-192 236-255 (489)
149 1rif_A DAR protein, DNA helica 43.6 5.5 0.00019 41.3 0.4 24 168-193 123-146 (282)
150 3i5x_A ATP-dependent RNA helic 43.5 9.4 0.00032 43.4 2.3 27 165-191 101-127 (563)
151 1sxj_B Activator 1 37 kDa subu 43.2 8.1 0.00028 39.9 1.6 41 145-192 19-59 (323)
152 1ci6_A Transcription factor AT 43.1 55 0.0019 27.7 6.4 38 438-475 20-57 (63)
153 4b4t_H 26S protease regulatory 43.0 14 0.00048 42.7 3.6 74 144-217 206-302 (467)
154 1r6b_X CLPA protein; AAA+, N-t 43.0 12 0.0004 44.7 3.1 37 156-192 463-505 (758)
155 2ewv_A Twitching motility prot 42.7 5.8 0.0002 43.9 0.4 20 174-193 135-154 (372)
156 1qvr_A CLPB protein; coiled co 41.7 11 0.00039 45.8 2.8 37 156-192 563-605 (854)
157 2db3_A ATP-dependent RNA helic 41.5 12 0.00041 41.5 2.7 25 166-192 86-110 (434)
158 3tbk_A RIG-I helicase domain; 41.4 11 0.00036 42.0 2.2 25 166-192 12-36 (555)
159 3pxg_A Negative regulator of g 41.3 11 0.00037 42.8 2.3 43 145-194 178-220 (468)
160 3upu_A ATP-dependent DNA helic 41.0 10 0.00036 42.5 2.2 36 153-192 27-62 (459)
161 1sxj_A Activator 1 95 kDa subu 41.0 7.3 0.00025 44.6 0.9 44 145-192 37-94 (516)
162 1fuu_A Yeast initiation factor 40.7 6.4 0.00022 41.8 0.3 25 166-192 51-75 (394)
163 1w36_D RECD, exodeoxyribonucle 40.5 9.7 0.00033 44.8 1.8 24 168-193 159-182 (608)
164 1hv8_A Putative ATP-dependent 39.8 10 0.00035 39.6 1.7 26 166-192 36-61 (367)
165 1n0w_A DNA repair protein RAD5 39.4 11 0.00038 37.4 1.8 29 165-193 11-42 (243)
166 3lfu_A DNA helicase II; SF1 he 39.2 10 0.00035 43.8 1.8 23 171-193 18-40 (647)
167 2dgc_A Protein (GCN4); basic d 38.8 43 0.0015 28.5 5.1 35 437-471 26-60 (63)
168 2v1x_A ATP-dependent DNA helic 38.5 16 0.00055 42.8 3.3 25 166-192 52-76 (591)
169 2fwr_A DNA repair protein RAD2 37.4 12 0.00041 41.4 1.9 23 168-192 103-125 (472)
170 4gl2_A Interferon-induced heli 37.3 12 0.00043 43.5 2.1 25 166-192 15-39 (699)
171 1c4o_A DNA nucleotide excision 36.3 19 0.00064 42.9 3.4 46 144-194 2-47 (664)
172 3e70_C DPA, signal recognition 36.2 21 0.00071 39.0 3.5 17 176-192 130-146 (328)
173 2gk6_A Regulator of nonsense t 36.1 13 0.00044 43.8 1.9 26 166-193 188-213 (624)
174 3b9q_A Chloroplast SRP recepto 35.6 20 0.00069 38.5 3.2 16 177-192 102-117 (302)
175 1go4_E MAD1 (mitotic arrest de 35.3 51 0.0017 30.8 5.3 33 442-474 13-45 (100)
176 2w0m_A SSO2452; RECA, SSPF, un 35.1 13 0.00044 36.3 1.5 28 166-193 11-41 (235)
177 1gd2_E Transcription factor PA 35.0 36 0.0012 29.7 4.1 37 438-474 26-62 (70)
178 2cvh_A DNA repair and recombin 35.0 15 0.0005 35.9 1.8 29 165-193 7-38 (220)
179 3sqw_A ATP-dependent RNA helic 34.8 15 0.00053 42.2 2.3 27 165-191 50-76 (579)
180 1wp9_A ATP-dependent RNA helic 34.8 14 0.00048 39.6 1.8 25 166-193 17-41 (494)
181 2p5t_B PEZT; postsegregational 34.8 26 0.0009 35.9 3.8 29 163-191 15-48 (253)
182 1nkp_B MAX protein, MYC proto- 34.7 69 0.0023 28.1 6.0 35 441-475 47-81 (83)
183 3lw7_A Adenylate kinase relate 34.6 11 0.00037 34.9 0.8 15 177-191 3-17 (179)
184 1dh3_A Transcription factor CR 34.3 35 0.0012 28.3 3.7 33 437-469 18-50 (55)
185 2ykg_A Probable ATP-dependent 34.2 18 0.0006 42.2 2.7 24 166-191 21-44 (696)
186 2jlq_A Serine protease subunit 33.2 11 0.00036 42.4 0.6 26 166-192 11-36 (451)
187 2l5g_B Putative uncharacterize 33.2 71 0.0024 25.5 5.0 32 445-476 6-37 (42)
188 1r6b_X CLPA protein; AAA+, N-t 32.6 16 0.00053 43.7 1.9 42 145-193 184-225 (758)
189 4gp7_A Metallophosphoesterase; 32.5 11 0.00037 36.5 0.4 17 177-193 11-27 (171)
190 2yy0_A C-MYC-binding protein; 32.1 57 0.0019 27.0 4.6 30 443-472 21-50 (53)
191 1e9r_A Conjugal transfer prote 31.9 11 0.00038 41.7 0.5 18 175-192 53-70 (437)
192 4ag6_A VIRB4 ATPase, type IV s 31.9 11 0.00039 41.1 0.5 19 175-193 35-53 (392)
193 3b85_A Phosphate starvation-in 31.8 16 0.00055 37.0 1.6 25 166-192 15-39 (208)
194 3hnw_A Uncharacterized protein 31.7 83 0.0028 30.6 6.5 42 443-484 84-125 (138)
195 3pxi_A Negative regulator of g 31.2 19 0.00065 43.1 2.3 42 145-193 178-219 (758)
196 1kd8_B GABH BLL, GCN4 acid bas 30.6 1E+02 0.0036 23.8 5.4 31 443-473 3-33 (36)
197 4a74_A DNA repair and recombin 30.5 19 0.00064 35.3 1.8 28 165-192 12-42 (231)
198 1nlw_A MAD protein, MAX dimeri 30.5 75 0.0026 28.1 5.5 34 441-474 47-80 (80)
199 1rz3_A Hypothetical protein rb 30.2 20 0.00068 35.4 1.9 29 164-192 8-39 (201)
200 3tr0_A Guanylate kinase, GMP k 29.9 13 0.00043 36.1 0.4 16 177-192 9-24 (205)
201 1lkx_A Myosin IE heavy chain; 29.7 22 0.00076 42.9 2.5 35 158-192 76-111 (697)
202 2qen_A Walker-type ATPase; unk 29.1 21 0.00071 37.1 1.9 17 176-192 32-48 (350)
203 2og2_A Putative signal recogni 29.1 30 0.001 38.3 3.3 16 177-192 159-174 (359)
204 2px0_A Flagellar biosynthesis 28.9 17 0.00059 38.8 1.3 18 176-193 106-123 (296)
205 2dr3_A UPF0273 protein PH0284; 28.8 19 0.00064 35.7 1.5 26 167-192 12-40 (247)
206 1ly1_A Polynucleotide kinase; 28.5 15 0.00053 34.5 0.7 15 177-191 4-18 (181)
207 2qnr_A Septin-2, protein NEDD5 28.4 13 0.00045 39.6 0.3 24 169-192 12-35 (301)
208 2v26_A Myosin VI; calmodulin-b 28.1 24 0.00083 43.1 2.5 35 158-192 122-157 (784)
209 1w9i_A Myosin II heavy chain; 28.0 25 0.00084 43.1 2.5 34 159-192 155-189 (770)
210 2xzl_A ATP-dependent helicase 27.9 20 0.00069 43.8 1.8 25 167-193 369-393 (802)
211 3tau_A Guanylate kinase, GMP k 27.9 17 0.00057 36.2 0.9 16 177-192 10-25 (208)
212 1ypw_A Transitional endoplasmi 27.7 24 0.00082 43.0 2.4 51 142-192 199-255 (806)
213 1i84_S Smooth muscle myosin he 27.7 25 0.00086 44.7 2.6 35 158-192 151-186 (1184)
214 3kl4_A SRP54, signal recogniti 27.7 31 0.001 39.3 3.1 18 176-193 98-115 (433)
215 2wjy_A Regulator of nonsense t 27.6 21 0.00073 43.5 1.9 26 166-193 364-389 (800)
216 2yy0_A C-MYC-binding protein; 27.6 51 0.0017 27.3 3.6 27 459-485 23-49 (53)
217 3mq7_A Bone marrow stromal ant 27.6 1.2E+02 0.0042 29.0 6.6 38 447-484 70-107 (121)
218 4a2q_A RIG-I, retinoic acid in 27.6 23 0.0008 42.5 2.2 25 166-192 256-280 (797)
219 1gm5_A RECG; helicase, replica 27.5 24 0.00083 43.0 2.4 39 151-192 368-406 (780)
220 1zp6_A Hypothetical protein AT 27.5 15 0.0005 35.3 0.4 16 177-192 11-26 (191)
221 1kgd_A CASK, peripheral plasma 27.4 14 0.00049 35.7 0.3 16 177-192 7-22 (180)
222 3dm5_A SRP54, signal recogniti 27.4 31 0.0011 39.4 3.1 19 175-193 100-118 (443)
223 3c8u_A Fructokinase; YP_612366 27.3 23 0.0008 35.0 1.8 18 175-192 22-39 (208)
224 3a00_A Guanylate kinase, GMP k 27.3 16 0.00053 35.6 0.5 15 178-192 4-18 (186)
225 2qag_C Septin-7; cell cycle, c 27.2 14 0.00048 41.8 0.2 23 170-192 26-48 (418)
226 2yhs_A FTSY, cell division pro 27.1 25 0.00085 41.0 2.3 16 177-192 295-310 (503)
227 2r8r_A Sensor protein; KDPD, P 27.0 15 0.0005 38.7 0.3 19 176-194 7-25 (228)
228 1g8x_A Myosin II heavy chain f 26.9 26 0.00088 44.1 2.5 35 158-192 154-189 (1010)
229 3trf_A Shikimate kinase, SK; a 26.9 17 0.00058 34.7 0.7 15 177-191 7-21 (185)
230 3e1s_A Exodeoxyribonuclease V, 26.8 22 0.00076 41.6 1.8 26 166-193 197-222 (574)
231 1kk8_A Myosin heavy chain, str 26.4 26 0.00088 43.3 2.3 35 158-192 151-186 (837)
232 1w7j_A Myosin VA; motor protei 26.3 27 0.00093 42.8 2.5 35 158-192 138-173 (795)
233 1qhx_A CPT, protein (chloramph 26.3 18 0.00061 34.3 0.7 17 176-192 4-20 (178)
234 2fna_A Conserved hypothetical 26.3 24 0.00082 36.6 1.8 20 171-192 28-47 (357)
235 3iij_A Coilin-interacting nucl 26.2 18 0.00061 34.6 0.8 17 176-192 12-28 (180)
236 2ycu_A Non muscle myosin 2C, a 26.0 28 0.00095 43.7 2.5 35 158-192 128-163 (995)
237 1lvg_A Guanylate kinase, GMP k 26.0 16 0.00055 36.2 0.4 16 177-192 6-21 (198)
238 4a2w_A RIG-I, retinoic acid in 25.8 25 0.00085 43.4 2.1 25 166-192 256-280 (936)
239 1uaa_A REP helicase, protein ( 25.8 19 0.00065 42.4 1.0 20 174-193 14-33 (673)
240 1oyw_A RECQ helicase, ATP-depe 25.8 15 0.00051 42.2 0.1 25 166-192 33-57 (523)
241 3cve_A Homer protein homolog 1 25.7 1E+02 0.0035 27.2 5.4 30 446-475 5-34 (72)
242 4db1_A Myosin-7; S1DC, cardiac 25.7 29 0.00097 42.6 2.5 34 159-192 154-188 (783)
243 2orw_A Thymidine kinase; TMTK, 25.7 14 0.00046 36.7 -0.2 18 177-194 5-22 (184)
244 1kd8_A GABH AIV, GCN4 acid bas 25.7 1E+02 0.0035 23.8 4.6 31 443-473 3-33 (36)
245 2b8t_A Thymidine kinase; deoxy 25.5 14 0.00048 38.2 -0.1 19 176-194 13-31 (223)
246 2oca_A DAR protein, ATP-depend 25.4 21 0.00072 39.9 1.2 35 150-193 112-146 (510)
247 2wq1_A General control protein 25.1 1.3E+02 0.0046 22.8 5.0 28 443-470 2-29 (33)
248 1a5t_A Delta prime, HOLB; zinc 25.0 33 0.0011 36.7 2.7 34 156-192 7-41 (334)
249 1deb_A APC protein, adenomatou 24.9 1.5E+02 0.005 24.6 5.7 42 443-484 5-46 (54)
250 4a4z_A Antiviral helicase SKI2 24.9 32 0.0011 43.0 2.8 24 166-191 47-70 (997)
251 2ehv_A Hypothetical protein PH 24.9 17 0.00059 36.1 0.3 17 177-193 32-48 (251)
252 4a15_A XPD helicase, ATP-depen 24.8 26 0.00088 41.4 1.9 38 150-192 2-39 (620)
253 2j41_A Guanylate kinase; GMP, 24.8 18 0.0006 35.0 0.4 16 177-192 8-23 (207)
254 3ra3_B P2F; coiled coil domain 24.6 74 0.0025 22.8 3.4 22 453-474 5-26 (28)
255 4anj_A Unconventional myosin-V 24.5 30 0.001 43.7 2.5 35 158-192 126-161 (1052)
256 1t2k_D Cyclic-AMP-dependent tr 24.4 99 0.0034 25.7 4.9 39 446-484 20-58 (61)
257 1ye8_A Protein THEP1, hypothet 24.2 18 0.00061 35.7 0.3 15 178-192 3-17 (178)
258 1gku_B Reverse gyrase, TOP-RG; 24.1 31 0.0011 43.2 2.5 23 166-190 64-86 (1054)
259 2gza_A Type IV secretion syste 24.0 18 0.00063 39.6 0.4 20 171-192 173-192 (361)
260 1kht_A Adenylate kinase; phosp 23.9 21 0.00073 33.8 0.8 16 176-191 4-19 (192)
261 1rj9_A FTSY, signal recognitio 23.9 21 0.00073 38.4 0.9 17 176-192 103-119 (304)
262 2bdt_A BH3686; alpha-beta prot 23.7 19 0.00064 34.7 0.3 16 177-192 4-19 (189)
263 3c3g_A Alpha/beta peptide with 23.7 1.5E+02 0.005 22.6 5.0 29 443-471 2-30 (33)
264 2d7d_A Uvrabc system protein B 23.7 43 0.0015 39.8 3.5 48 143-194 4-51 (661)
265 2pt7_A CAG-ALFA; ATPase, prote 23.6 19 0.00064 39.1 0.4 19 172-192 170-188 (330)
266 3lnc_A Guanylate kinase, GMP k 23.6 22 0.00075 35.6 0.8 16 177-192 29-44 (231)
267 3sop_A Neuronal-specific septi 23.5 19 0.00063 38.0 0.3 18 175-192 2-19 (270)
268 3m48_A General control protein 23.5 79 0.0027 24.1 3.5 28 443-470 2-29 (33)
269 3nbx_X ATPase RAVA; AAA+ ATPas 23.5 30 0.001 40.0 2.1 25 166-192 34-58 (500)
270 2v6i_A RNA helicase; membrane, 23.5 24 0.00084 39.3 1.3 16 177-192 4-19 (431)
271 4dzn_A Coiled-coil peptide CC- 23.0 1.4E+02 0.0048 22.1 4.7 24 445-468 6-29 (33)
272 3cf2_A TER ATPase, transitiona 22.8 38 0.0013 41.6 2.9 50 143-192 200-255 (806)
273 1kag_A SKI, shikimate kinase I 22.8 23 0.0008 33.3 0.8 16 177-192 6-21 (173)
274 2jee_A YIIU; FTSZ, septum, coi 22.7 1.4E+02 0.0048 26.9 5.7 20 447-466 26-45 (81)
275 3kta_A Chromosome segregation 22.6 21 0.00073 34.0 0.5 16 177-192 28-43 (182)
276 3vaa_A Shikimate kinase, SK; s 22.5 24 0.00081 34.6 0.8 16 177-192 27-42 (199)
277 1nkp_A C-MYC, MYC proto-oncoge 22.4 1.8E+02 0.0062 26.0 6.5 36 441-476 52-87 (88)
278 3gp4_A Transcriptional regulat 22.2 2.9E+02 0.0099 26.4 8.4 19 409-427 42-60 (142)
279 3kb2_A SPBC2 prophage-derived 22.1 24 0.00082 32.9 0.7 16 177-192 3-18 (173)
280 1ci6_A Transcription factor AT 21.9 1.2E+02 0.0042 25.5 5.0 38 446-483 21-58 (63)
281 2ze6_A Isopentenyl transferase 21.8 24 0.00082 36.5 0.7 14 177-190 3-16 (253)
282 1znw_A Guanylate kinase, GMP k 21.5 22 0.00075 35.2 0.3 16 177-192 22-37 (207)
283 2z83_A Helicase/nucleoside tri 21.4 27 0.00092 39.3 1.1 16 177-192 23-38 (459)
284 1uf9_A TT1252 protein; P-loop, 21.4 28 0.00096 33.5 1.1 20 172-191 5-24 (203)
285 2wt7_A Proto-oncogene protein 21.4 1.3E+02 0.0043 25.3 5.0 42 444-485 19-60 (63)
286 1xx6_A Thymidine kinase; NESG, 21.2 19 0.00065 36.3 -0.2 18 177-194 10-27 (191)
287 2rhm_A Putative kinase; P-loop 21.2 25 0.00087 33.5 0.7 17 176-192 6-22 (193)
288 2ged_A SR-beta, signal recogni 21.1 31 0.0011 32.7 1.3 36 157-192 27-65 (193)
289 1yks_A Genome polyprotein [con 21.1 27 0.00094 39.0 1.0 21 170-192 5-25 (440)
290 1tev_A UMP-CMP kinase; ploop, 21.0 26 0.00088 33.3 0.7 15 177-191 5-19 (196)
291 1z6g_A Guanylate kinase; struc 20.9 23 0.00079 35.6 0.4 16 177-192 25-40 (218)
292 3c3f_A Alpha/beta peptide with 20.8 1.8E+02 0.0062 22.2 5.0 29 443-471 3-31 (34)
293 1moz_A ARL1, ADP-ribosylation 20.8 29 0.00099 32.4 1.0 27 166-192 8-35 (183)
294 2i3b_A HCR-ntpase, human cance 20.8 24 0.00081 35.3 0.4 16 177-192 3-18 (189)
295 1odf_A YGR205W, hypothetical 3 20.6 51 0.0017 35.2 2.9 19 174-192 30-48 (290)
296 4dzn_A Coiled-coil peptide CC- 20.6 1.2E+02 0.0042 22.4 4.0 25 450-474 4-28 (33)
297 2oxj_A Hybrid alpha/beta pepti 20.5 1.9E+02 0.0063 22.2 5.0 28 443-470 3-30 (34)
298 3nmd_A CGMP dependent protein 20.4 2.2E+02 0.0074 25.2 6.3 33 444-476 36-68 (72)
299 3rc3_A ATP-dependent RNA helic 20.2 27 0.00091 42.0 0.7 20 169-190 151-170 (677)
300 3m91_A Proteasome-associated A 20.1 2.4E+02 0.0081 23.3 6.1 33 443-475 18-50 (51)
No 1
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=1.1e-90 Score=779.69 Aligned_cols=358 Identities=40% Similarity=0.580 Sum_probs=304.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeCCC------C
Q 002104 67 TISGIKDELATLSACINQLNIQRRQILNEFLDSKGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADN------K 140 (966)
Q Consensus 67 ~i~~l~~El~~l~~~~~~~~~eRk~L~N~l~elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~~~------k 140 (966)
.+.+++.|++.+.+++.+++.+||+|||+++|++|||||||||||+...|.......+...+...+.+..... .
T Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 104 (412)
T 3u06_A 25 CNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMG 104 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC-------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccccccC
Confidence 4677888889999999999999999999999999999999999999988865443334445555555443221 2
Q ss_pred CceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHh---cC
Q 002104 141 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME---SN 217 (966)
Q Consensus 141 ~k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e---~~ 217 (966)
.+.|.||+||+++++|++||+.|.|+|+++|+|||+||||||||||||||||+|.++++|||||++++||..+.. ..
T Consensus 105 ~~~F~FD~VF~~~~~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~ 184 (412)
T 3u06_A 105 QQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLG 184 (412)
T ss_dssp CCEEECSEEECTTCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGT
T ss_pred ceEEeeCeEcCCCCCHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999998854 35
Q ss_pred CeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccC
Q 002104 218 HAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNS 297 (966)
Q Consensus 218 ~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~ 297 (966)
+.|.|+|||+|||||+|+|||.+... +..+.+.+++.++++|.|++++.|.++++++.+|..|.++|++++|.+
T Consensus 185 ~~~~v~vS~~EIYnE~i~DLL~~~~~------~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~ 258 (412)
T 3u06_A 185 WEYEIKATFLEIYNEVLYDLLSNEQK------DMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAG 258 (412)
T ss_dssp EEEEEEEEEEEEETTEEEETTCCSCC------CCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----C
T ss_pred ceEEEEEEEEEEeCCeeEEcCCCCCC------CceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCC
Confidence 78999999999999999999965432 123556678899999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEEEEecCCcCccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCC
Q 002104 298 NRTSSRSHCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPY 377 (966)
Q Consensus 298 N~~SSRSH~IftI~I~~~n~~~~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~hIPY 377 (966)
|..|||||+||+|+|.+.+........|+|+|||||||||.. .|.|++|+.+||+||++||+||.||+.++.||||
T Consensus 259 N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~~hiPy 334 (412)
T 3u06_A 259 NERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPY 334 (412)
T ss_dssp HHHHTTCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHTTCSCCCG
T ss_pred CCCCcCceEEEEEEEEEEeCCCCCEEEEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccCCCCCc
Confidence 999999999999999988877777788999999999999974 4689999999999999999999999999999999
Q ss_pred CCCccccccccccCCCcceeEEEecCCCCCCHHHHHHHHHHHHHhhhcccCcCCchh
Q 002104 378 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDSNE 434 (966)
Q Consensus 378 RdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~eETLsTLrFAsRaK~I~l~~~~~~~ 434 (966)
||||||+||||||||||+|+|||||||+..+++||++||+||+||++|++++...+.
T Consensus 335 RdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~~~~n~ 391 (412)
T 3u06_A 335 RNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 391 (412)
T ss_dssp GGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC-------
T ss_pred cccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhcccccccccc
Confidence 999999999999999999999999999999999999999999999999987765443
No 2
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-91 Score=779.20 Aligned_cols=363 Identities=36% Similarity=0.525 Sum_probs=305.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEEEeCCCCCC-cCCCCCCcEEE-eCCC----ceEEEeC--
Q 002104 66 PTISGIKDELATLSACINQLNIQRRQILNEFLDSKGNIRVFCRIRPISMG-ENFGRLRPVIA-KDSS----NVLLKLA-- 137 (966)
Q Consensus 66 ~~i~~l~~El~~l~~~~~~~~~eRk~L~N~l~elkGnIRV~~RVRPl~~~-E~~~~~~~vv~-~d~~----~v~l~~~-- 137 (966)
..|.+++.++..+.+++.+.+.+||+|||+++|++|||||||||||+... |........+. .++. .+.+...
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 103 (403)
T 4etp_A 24 EKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQN 103 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCC
Confidence 35788889999999999999999999999999999999999999999876 33222111111 2221 1122211
Q ss_pred CCCCceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHh--
Q 002104 138 DNKSKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME-- 215 (966)
Q Consensus 138 ~~k~k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e-- 215 (966)
....+.|.||+||+++++|++||++|.|+|+++|+|||+||||||||||||||||+|+ ++|||||++++||..+..
T Consensus 104 ~~~~~~F~FD~VF~~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~i~~~~ 181 (403)
T 4etp_A 104 TAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLK 181 (403)
T ss_dssp SCEEEEEEESEEECTTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHH
T ss_pred CcCceEEEcCEEECCCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHHHHHHHhhh
Confidence 2235789999999999999999999999999999999999999999999999999996 469999999999998754
Q ss_pred -cCCeeEEEEEEEEEecceeecccCCCCCCCC-CCCCCcceeeecC-CCcEEecCcEEEEecCHHHHHHHHHhccccccc
Q 002104 216 -SNHAFRISFSMLEIYLGSLKDLLVTQPTKAT-DPLPPCLSIHTEP-KGGIEIDNLVTIQVNDFNQALRLYRLGCRFRST 292 (966)
Q Consensus 216 -~~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~-~~~~~~L~Ired~-~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~t 292 (966)
..+.|.|+|||+|||||+|+|||.+...... ......+.|++++ .++++|.|++++.|.++++++.+|..|.++|++
T Consensus 182 ~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~ 261 (403)
T 4etp_A 182 TKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRST 261 (403)
T ss_dssp TTTEEEEEEEEEEEEETTEEEETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C--
T ss_pred ccCceEEEEEEEEEEecceeeEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhccc
Confidence 4578999999999999999999987643211 1123346677765 567999999999999999999999999999999
Q ss_pred ccccCCCCCCCceeEEEEEEEEecCCcCccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCC
Q 002104 293 ASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK 372 (966)
Q Consensus 293 asT~~N~~SSRSH~IftI~I~~~n~~~~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~ 372 (966)
++|.+|..|||||+||+|+|.+.+...+....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+.+.
T Consensus 262 ~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~ 341 (403)
T 4etp_A 262 ASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPD 341 (403)
T ss_dssp --CHHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred ccccCCcccCCcccEEEEEEEEeecCCCCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999998877777788999999999999999999999999999999999999999999998765
Q ss_pred C---CCCCCCCccccccccccCCCcceeEEEecCCCCCCHHHHHHHHHHHHHhhhcccCcC
Q 002104 373 R---HVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHE 430 (966)
Q Consensus 373 ~---hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~eETLsTLrFAsRaK~I~l~~~ 430 (966)
. ||||||||||+||||+|||||+|+|||||||+..+++||++||+||+||++|+++++
T Consensus 342 ~~~~hiPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 342 STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp TTTSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred CCCCcCCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 4 999999999999999999999999999999999999999999999999999998764
No 3
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=1.4e-89 Score=761.39 Aligned_cols=332 Identities=39% Similarity=0.652 Sum_probs=298.1
Q ss_pred ccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCC-ceEEEeCCCCCceeecceeeCCCCChHHHHHhhHHHHHHHhcCCc
Q 002104 97 LDSKGNIRVFCRIRPISMGENFGRLRPVIAKDSS-NVLLKLADNKSKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYN 175 (966)
Q Consensus 97 ~elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~-~v~l~~~~~k~k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyN 175 (966)
+|++|||||||||||++..|.......++...+. .+......+..+.|.||+||+++++|++||+.+.|+|+++++|||
T Consensus 1 ee~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~lv~~~l~G~n 80 (369)
T 3cob_A 1 EDMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVDGYN 80 (369)
T ss_dssp ---CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECTTSCEEEEECSEEECTTCCHHHHHHTTTHHHHHHHTTCE
T ss_pred CCCCCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCCCCCceEEecCEEECCCCCcceehhhhhhhhHhhhcCCc
Confidence 5899999999999999987754333233333332 222223344568999999999999999999999999999999999
Q ss_pred ccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHhcC--CeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcc
Q 002104 176 ACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESN--HAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCL 253 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e~~--~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~~L 253 (966)
+||||||||||||||||+|+++++|||||++++||+.+.... ..|.|++||+|||||+|+|||.+.... ...+
T Consensus 81 ~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~-----~~~l 155 (369)
T 3cob_A 81 VCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAK-----RLKL 155 (369)
T ss_dssp EEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSC-----CCCC
T ss_pred eEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccC-----Ccce
Confidence 999999999999999999999999999999999999986543 589999999999999999999875421 2458
Q ss_pred eeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCcCccccceeEEEecc
Q 002104 254 SIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVDLG 333 (966)
Q Consensus 254 ~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~~~~~~SKL~LVDLA 333 (966)
.|++++.++++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.+........|+|+|||||
T Consensus 156 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLA 235 (369)
T 3cob_A 156 DIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLA 235 (369)
T ss_dssp EEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECC
T ss_pred EEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCCCcEEEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999988877777788999999999
Q ss_pred CCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcceeEEEecCCCCCCHHHHH
Q 002104 334 GSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETI 413 (966)
Q Consensus 334 GSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~eETL 413 (966)
||||+.++++.|.|++|+.+||+||++||+||.||+.++.||||||||||+||||+|||||+|+|||||||+..+++||+
T Consensus 236 GSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl 315 (369)
T 3cob_A 236 GSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETH 315 (369)
T ss_dssp CSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHH
T ss_pred CCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccCcCCch
Q 002104 414 CSLNFATRVKSVHLGHEDSN 433 (966)
Q Consensus 414 sTLrFAsRaK~I~l~~~~~~ 433 (966)
+||+||+||++|++.+....
T Consensus 316 ~TLrfA~rak~i~~~~~~n~ 335 (369)
T 3cob_A 316 NSLTYASRVRSIVNDPSKNV 335 (369)
T ss_dssp HHHHHHHHHHTCBCCCCCCE
T ss_pred HHHHHHHHHhhcccCCcccC
Confidence 99999999999998776543
No 4
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.8e-88 Score=752.67 Aligned_cols=334 Identities=40% Similarity=0.597 Sum_probs=253.2
Q ss_pred HHhhhhhhccCCCCEEEEEEeCCCCCCcCCCCCCcE-EE-------eCCCceEEEe------------CCCCCceeecce
Q 002104 89 RRQILNEFLDSKGNIRVFCRIRPISMGENFGRLRPV-IA-------KDSSNVLLKL------------ADNKSKNYSFDK 148 (966)
Q Consensus 89 Rk~L~N~l~elkGnIRV~~RVRPl~~~E~~~~~~~v-v~-------~d~~~v~l~~------------~~~k~k~F~FD~ 148 (966)
-.+|||++++++|||||||||||++..|.......+ +. .+...+.+.. .....+.|.||+
T Consensus 10 ~~~~hn~~~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~ 89 (376)
T 2rep_A 10 HSSGLVPRGSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDR 89 (376)
T ss_dssp -------------CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSE
T ss_pred cccccchhhccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecE
Confidence 357999999999999999999999998865432111 11 1222222211 012346899999
Q ss_pred eeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecccCCC----CCCcHHHHHHHHHHHHHh---cCCeeE
Q 002104 149 VFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPD----SPGIVPRAIEAIFKQAME---SNHAFR 221 (966)
Q Consensus 149 VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~e----~pGIIPRale~LF~~i~e---~~~~f~ 221 (966)
||+++++|++||++|.|+|+++|+|||+||||||||||||||||+|++. .+|||||++++||+.+.. ..+.|.
T Consensus 90 Vf~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~ 169 (376)
T 2rep_A 90 VFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYS 169 (376)
T ss_dssp EECTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEE
T ss_pred EcCCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEE
Confidence 9999999999999999999999999999999999999999999999753 689999999999998864 356899
Q ss_pred EEEEEEEEecceeecccCCCCCCCCCCCCCcceeeec--CCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCC
Q 002104 222 ISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTE--PKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNR 299 (966)
Q Consensus 222 VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~~L~Ired--~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~ 299 (966)
|+|||+|||||+|+|||.+.... .....+.|+++ +.++++|.|++++.|.+++|++++|..|.++|++++|.||.
T Consensus 170 v~vS~~EIYnE~i~DLL~~~~~~---~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~ 246 (376)
T 2rep_A 170 FVASYVEIYNETVRDLLATGTRK---GQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNE 246 (376)
T ss_dssp EEEEEEEEETTEEEETTCCC-----------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----
T ss_pred EEEEEEEEECCEeeEcccccccc---ccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCC
Confidence 99999999999999999875321 11235778887 67899999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEEecCCcCccccceeEEEeccCCcccccccccc----hhHHHHHHhhhhHHHHHHHHHHHhhCCCCC
Q 002104 300 TSSRSHCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTKARG----RRLDEGKAINLSLSALGDVIYALQRRKRHV 375 (966)
Q Consensus 300 ~SSRSH~IftI~I~~~n~~~~~~~~SKL~LVDLAGSER~~kt~a~G----~rlkEa~~INkSLsALG~VI~ALs~k~~hI 375 (966)
.|||||+||+|+|.+.+...+....|+|+|||||||||+.++++.| +|++|+.+||+||++||+||.||+.++.||
T Consensus 247 ~SSRSH~Ifti~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~~hV 326 (376)
T 2rep_A 247 RSSRSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHV 326 (376)
T ss_dssp CGGGSEEEEEEEEEEEESSSCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTCSCC
T ss_pred CCCCceEEEEEEEEEEecCCCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999988776666778999999999999999999999 999999999999999999999999999999
Q ss_pred CCCCCccccccccccCCCcceeEEEecCCCCCCHHHHHHHHHHHHHhhhc
Q 002104 376 PYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 425 (966)
Q Consensus 376 PYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~eETLsTLrFAsRaK~I 425 (966)
||||||||+||||+|||||+|+||+||||+..+++||++||+||+||+.|
T Consensus 327 PYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 327 PYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp CGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred CCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999875
No 5
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=5.1e-88 Score=739.49 Aligned_cols=325 Identities=44% Similarity=0.702 Sum_probs=281.6
Q ss_pred cCCCCEEEEEEeCCCCCCcCCCC-CCcEEEeC--CCceEEEeCCCCCceeecceeeCCCCChHHHHHhhHHHHHHHhcCC
Q 002104 98 DSKGNIRVFCRIRPISMGENFGR-LRPVIAKD--SSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGY 174 (966)
Q Consensus 98 elkGnIRV~~RVRPl~~~E~~~~-~~~vv~~d--~~~v~l~~~~~k~k~F~FD~VF~p~asQedVF~eV~PLV~svLdGy 174 (966)
+++|||||+|||||++..|.... ...++.++ +..++.....++.+.|.||+||+++++|++||++|.|+|+++++||
T Consensus 1 ~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~~l~G~ 80 (330)
T 2h58_A 1 GSKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQEVQALVTSCIDGF 80 (330)
T ss_dssp ----CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEETTEEEEEECSEEECTTCCHHHHHTTTHHHHHHHHTTC
T ss_pred CCCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCCCCeeEEecCeEeCCCCCcHhHHHHHHHHHHHHhCCC
Confidence 47899999999999998775432 22344443 3334433445567899999999999999999999999999999999
Q ss_pred cccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHhc--CCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCc
Q 002104 175 NACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMES--NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPC 252 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e~--~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~~ 252 (966)
|+||||||||||||||||+|+++++|||||++++||..+.+. ...|.|+|||+|||||+|+|||.+.+.. ...
T Consensus 81 n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~-----~l~ 155 (330)
T 2h58_A 81 NVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQE-----KLE 155 (330)
T ss_dssp CEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCC-----CCC
T ss_pred EEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccc-----cce
Confidence 999999999999999999999999999999999999998754 4589999999999999999999765321 123
Q ss_pred ceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCcCccccceeEEEec
Q 002104 253 LSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVDL 332 (966)
Q Consensus 253 L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~~~~~~SKL~LVDL 332 (966)
+.+++++.++++|.||+++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|.+.+...+....|+|+||||
T Consensus 156 i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDL 235 (330)
T 2h58_A 156 IRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDL 235 (330)
T ss_dssp CEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTTTEEEEEEEEEEEC
T ss_pred EEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCCCcEEEEEEEEEeC
Confidence 55557889999999999999999999999999999999999999999999999999999998887777778899999999
Q ss_pred cCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcceeEEEecCCCCCCHHHH
Q 002104 333 GGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCET 412 (966)
Q Consensus 333 AGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~eET 412 (966)
|||||..++++.|.|++|+.+||+||++||+||.||+.++.||||||||||+||||+|||||+|+||+||||+..+++||
T Consensus 236 AGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ET 315 (330)
T 2h58_A 236 AGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSET 315 (330)
T ss_dssp CCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHH
T ss_pred CCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccc
Q 002104 413 ICSLNFATRVKSVHL 427 (966)
Q Consensus 413 LsTLrFAsRaK~I~l 427 (966)
++||+||+|||+|++
T Consensus 316 l~TL~fA~rak~i~~ 330 (330)
T 2h58_A 316 LYSLKFAERVRSVEL 330 (330)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHHhhCcC
Confidence 999999999999963
No 6
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=2e-87 Score=741.04 Aligned_cols=325 Identities=35% Similarity=0.543 Sum_probs=256.5
Q ss_pred hhhhhccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeC---------------------CCCCceeecceee
Q 002104 92 ILNEFLDSKGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLA---------------------DNKSKNYSFDKVF 150 (966)
Q Consensus 92 L~N~l~elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~---------------------~~k~k~F~FD~VF 150 (966)
+++..+|++|||||+|||||++..|...+...++.+.+..+++..+ ..+.+.|.||+||
T Consensus 1 ~~~~~~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf 80 (355)
T 3lre_A 1 MSVTEEDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVF 80 (355)
T ss_dssp -----------CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEE
T ss_pred CCcChhhccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEE
Confidence 3567789999999999999999888655555555554444333211 1234579999999
Q ss_pred CCCCChHHHHHh-hHHHHHHHhcCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHhc--CCeeEEEEEEE
Q 002104 151 HPGSSQDEVFSE-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMES--NHAFRISFSML 227 (966)
Q Consensus 151 ~p~asQedVF~e-V~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e~--~~~f~VsVS~l 227 (966)
+++++|++||+. +.|+|+++|+|||+||||||||||||||||+|+++++|||||++++||+.+.+. ...|.|.|||+
T Consensus 81 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~ 160 (355)
T 3lre_A 81 DETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYL 160 (355)
T ss_dssp CTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEE
Confidence 999999999998 599999999999999999999999999999999999999999999999998653 45799999999
Q ss_pred EEecceeecccCCCCCCCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeE
Q 002104 228 EIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCM 307 (966)
Q Consensus 228 EIYNE~V~DLL~~~~~~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~I 307 (966)
|||||+|+|||.+. ..+.|++++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+|
T Consensus 161 EIYnE~i~DLL~~~---------~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~i 231 (355)
T 3lre_A 161 EVYNEQIRDLLVNS---------GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAV 231 (355)
T ss_dssp EEETTEEEESSSCC---------CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEE
T ss_pred EEECCEEEECcCCC---------CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEE
Confidence 99999999999753 248999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCC---cCccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhC---CCCCCCCCCc
Q 002104 308 IRISITCFDAP---ERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRR---KRHVPYRNSK 381 (966)
Q Consensus 308 ftI~I~~~n~~---~~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k---~~hIPYRdSK 381 (966)
|+|+|.+.+.. ......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+.+ ..||||||||
T Consensus 232 f~i~v~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSk 311 (355)
T 3lre_A 232 FQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSK 311 (355)
T ss_dssp EEEEEEEEETTSCTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSH
T ss_pred EEEEEEEecCCCCCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCH
Confidence 99999987643 23456799999999999999999999999999999999999999999999874 3599999999
Q ss_pred cccccccccCCCcceeEEEecCCCCCCHHHHHHHHHHHHHhhhc
Q 002104 382 LTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 425 (966)
Q Consensus 382 LTrLLqDSLGGNSKTlMIa~ISPs~~~~eETLsTLrFAsRaK~I 425 (966)
||+||||+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 312 LT~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 312 LTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp HHHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999986
No 7
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=6.9e-87 Score=735.34 Aligned_cols=331 Identities=37% Similarity=0.607 Sum_probs=262.8
Q ss_pred ccCCCCEEEEEEeCCCCCCcCCCCCCcEEEe-CC--C--ceEEEeCCC--CCceeecceeeCCCCChHHHHHhhHHHHHH
Q 002104 97 LDSKGNIRVFCRIRPISMGENFGRLRPVIAK-DS--S--NVLLKLADN--KSKNYSFDKVFHPGSSQDEVFSEVEPVIKS 169 (966)
Q Consensus 97 ~elkGnIRV~~RVRPl~~~E~~~~~~~vv~~-d~--~--~v~l~~~~~--k~k~F~FD~VF~p~asQedVF~eV~PLV~s 169 (966)
+++||||||||||||+...|.......++.. ++ . .+.+....+ ..+.|.||+||+++++|++||++|.|+|++
T Consensus 1 m~lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~v~~lv~~ 80 (349)
T 3t0q_A 1 MALRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEIRQLVQS 80 (349)
T ss_dssp ----CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHHHHHHHHG
T ss_pred CCCCCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHHHHHHHHH
Confidence 3689999999999999988865443323321 11 1 122222222 256899999999999999999999999999
Q ss_pred HhcCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHh---cCCeeEEEEEEEEEecceeecccCCCCCCCC
Q 002104 170 VLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME---SNHAFRISFSMLEIYLGSLKDLLVTQPTKAT 246 (966)
Q Consensus 170 vLdGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e---~~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~ 246 (966)
+|+|||+||||||||||||||||+|+ ++|||||++++||+.+.. ..+.|.|+|||+|||||+|+|||.+......
T Consensus 81 ~l~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 158 (349)
T 3t0q_A 81 SLDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDN 158 (349)
T ss_dssp GGTTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC-------
T ss_pred HHCCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccccccccc
Confidence 99999999999999999999999996 469999999999998754 4568999999999999999999986542110
Q ss_pred ---CCCCCcceeeecC-CCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCcCcc
Q 002104 247 ---DPLPPCLSIHTEP-KGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRR 322 (966)
Q Consensus 247 ---~~~~~~L~Ired~-~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~~~~ 322 (966)
......+.|++++ .++++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.+...+..
T Consensus 159 ~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~ 238 (349)
T 3t0q_A 159 IDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGET 238 (349)
T ss_dssp --------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTTCCE
T ss_pred cccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCCCCe
Confidence 0113456777765 567999999999999999999999999999999999999999999999999999988777777
Q ss_pred ccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCC---CCCCCCCCccccccccccCCCcceeEE
Q 002104 323 EKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK---RHVPYRNSKLTQVLKDSLGEDSKTLML 399 (966)
Q Consensus 323 ~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~---~hIPYRdSKLTrLLqDSLGGNSKTlMI 399 (966)
..|+|+|||||||||+.++++.|+|++|+.+||+||++||+||.||+.++ .||||||||||+||||+|||||+|+||
T Consensus 239 ~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mi 318 (349)
T 3t0q_A 239 SQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMF 318 (349)
T ss_dssp EEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEEE
T ss_pred eEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEEE
Confidence 88999999999999999999999999999999999999999999998755 499999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhhhcccCc
Q 002104 400 VHVSPKEDDLCETICSLNFATRVKSVHLGH 429 (966)
Q Consensus 400 a~ISPs~~~~eETLsTLrFAsRaK~I~l~~ 429 (966)
|||||+..+++||++||+||+||++|++++
T Consensus 319 ~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 319 VNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp EEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred EEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 999999999999999999999999999764
No 8
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=3.3e-87 Score=738.13 Aligned_cols=324 Identities=38% Similarity=0.584 Sum_probs=264.7
Q ss_pred CCCEEEEEEeCCCCCCcCCCCCCcEEEeCCC--ceEEEeC---------CCCCceeecceeeCCCCChHHHHHh-hHHHH
Q 002104 100 KGNIRVFCRIRPISMGENFGRLRPVIAKDSS--NVLLKLA---------DNKSKNYSFDKVFHPGSSQDEVFSE-VEPVI 167 (966)
Q Consensus 100 kGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~--~v~l~~~---------~~k~k~F~FD~VF~p~asQedVF~e-V~PLV 167 (966)
.+||||+|||||++..|.......++.+++. .+.+..+ ....+.|.||+||+++++|++||+. ++|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 6899999999999988865444445554432 3333221 1235789999999999999999998 69999
Q ss_pred HHHhcCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHh--cCCeeEEEEEEEEEecceeecccCCCCCCC
Q 002104 168 KSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME--SNHAFRISFSMLEIYLGSLKDLLVTQPTKA 245 (966)
Q Consensus 168 ~svLdGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e--~~~~f~VsVS~lEIYNE~V~DLL~~~~~~~ 245 (966)
+++|+|||+||||||||||||||||+|+++++|||||++++||+.+.. ....|.|++||+|||||+|+|||.+.
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~---- 158 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNN---- 158 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTTE----
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccCC----
Confidence 999999999999999999999999999999999999999999999864 35689999999999999999999732
Q ss_pred CCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCc--Cccc
Q 002104 246 TDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPE--RRRE 323 (966)
Q Consensus 246 ~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~--~~~~ 323 (966)
..+.|++++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.+... ....
T Consensus 159 -----~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~ 233 (350)
T 2vvg_A 159 -----TKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIR 233 (350)
T ss_dssp -----EEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEEE
T ss_pred -----cCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccEE
Confidence 348899999999999999999999999999999999999999999999999999999999998765432 2346
Q ss_pred cceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcceeEEEecC
Q 002104 324 KNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVS 403 (966)
Q Consensus 324 ~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~hIPYRdSKLTrLLqDSLGGNSKTlMIa~IS 403 (966)
.|+|+|||||||||..++++.|.|++|+.+||+||++||+||.||+.++.||||||||||+||||+|||||+|+||+|||
T Consensus 234 ~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~is 313 (350)
T 2vvg_A 234 VGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANIS 313 (350)
T ss_dssp EEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEEC
T ss_pred EEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEEEeC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhcccCcCCc
Q 002104 404 PKEDDLCETICSLNFATRVKSVHLGHEDS 432 (966)
Q Consensus 404 Ps~~~~eETLsTLrFAsRaK~I~l~~~~~ 432 (966)
|+..+++||++||+||+|||+|++.+...
T Consensus 314 P~~~~~~ETl~TL~fA~rak~i~n~~~~n 342 (350)
T 2vvg_A 314 PASTNYDETMSTLRYADRAKQIKNKPRIN 342 (350)
T ss_dssp CBGGGHHHHHHHHHHHHHHTTCBCCCCCC
T ss_pred CccccHHHHHHHHHHHHHHhhccccceec
Confidence 99999999999999999999999877544
No 9
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.1e-87 Score=744.61 Aligned_cols=329 Identities=33% Similarity=0.530 Sum_probs=256.0
Q ss_pred hhccCCCCEEEEEEeCCCCCCcCCCCCC-cEEEeCCCceEEEeCC--CCCceeecceeeCCCCChHHHHHh-hHHHHHHH
Q 002104 95 EFLDSKGNIRVFCRIRPISMGENFGRLR-PVIAKDSSNVLLKLAD--NKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSV 170 (966)
Q Consensus 95 ~l~elkGnIRV~~RVRPl~~~E~~~~~~-~vv~~d~~~v~l~~~~--~k~k~F~FD~VF~p~asQedVF~e-V~PLV~sv 170 (966)
.....+|+|||+|||||++..|...... ++...++..+.+.... ...+.|.||+||+++++|++||+. ++|+|+++
T Consensus 15 ~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~ 94 (388)
T 3bfn_A 15 YFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHL 94 (388)
T ss_dssp CSSSCCCCCEEEEEECCCC-----------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHH
T ss_pred cccCCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHh
Confidence 4567899999999999999888643322 2333444444332221 245789999999999999999997 79999999
Q ss_pred hcCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHh-----cCCeeEEEEEEEEEecceeecccCCCCCCC
Q 002104 171 LDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME-----SNHAFRISFSMLEIYLGSLKDLLVTQPTKA 245 (966)
Q Consensus 171 LdGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e-----~~~~f~VsVS~lEIYNE~V~DLL~~~~~~~ 245 (966)
|+|||+||||||||||||||||+|+++++|||||++++||+.+.. ..+.|.|+|||+|||||+|+|||.+..
T Consensus 95 l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~--- 171 (388)
T 3bfn_A 95 LEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPAS--- 171 (388)
T ss_dssp TTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSS---
T ss_pred hcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCC---
Confidence 999999999999999999999999999999999999999998864 245799999999999999999997643
Q ss_pred CCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCc-Ccccc
Q 002104 246 TDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPE-RRREK 324 (966)
Q Consensus 246 ~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~-~~~~~ 324 (966)
..+.|++++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.+... .....
T Consensus 172 -----~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~ 246 (388)
T 3bfn_A 172 -----GDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQRE 246 (388)
T ss_dssp -----CBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTCCEEE
T ss_pred -----CCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCCceeE
Confidence 348899999999999999999999999999999999999999999999999999999999998865432 34568
Q ss_pred ceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcceeEEEecCC
Q 002104 325 NKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSP 404 (966)
Q Consensus 325 SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISP 404 (966)
|+|+|||||||||..++++.|.|++|+.+||+||++||+||.||+.++.||||||||||+||||+|||||+|+||+||||
T Consensus 247 skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP 326 (388)
T 3bfn_A 247 GKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAP 326 (388)
T ss_dssp EEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECC
T ss_pred EEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhcccCcCC
Q 002104 405 KEDDLCETICSLNFATRVKSVHLGHED 431 (966)
Q Consensus 405 s~~~~eETLsTLrFAsRaK~I~l~~~~ 431 (966)
+..+++||++||+||+|||+|++.|..
T Consensus 327 ~~~~~~ETlsTLrfA~rak~I~n~p~~ 353 (388)
T 3bfn_A 327 ERRFYLDTVSALNFAARSKEVINRPFT 353 (388)
T ss_dssp SGGGHHHHHHHHHHHCSEEEEC-----
T ss_pred ccccHHHHHHHHHHHHHHhhCcCcCcc
Confidence 999999999999999999999976654
No 10
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=2e-86 Score=733.17 Aligned_cols=327 Identities=38% Similarity=0.625 Sum_probs=298.4
Q ss_pred cCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeCCCCCceeecceeeCCCCChHHHHHh-hHHHHHHHhcCCcc
Q 002104 98 DSKGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNA 176 (966)
Q Consensus 98 elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~~~k~k~F~FD~VF~p~asQedVF~e-V~PLV~svLdGyNv 176 (966)
...|||||+|||||++..|...+..+++.+++...+........+.|.||+||+++++|++||+. ++|+|+++++|||+
T Consensus 3 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~ 82 (355)
T 1goj_A 3 SSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNG 82 (355)
T ss_dssp CSSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCE
T ss_pred CCCCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcc
Confidence 34799999999999998876555556666666555444444567899999999999999999997 79999999999999
Q ss_pred cEEeeccCCCCcceecccC----CCCCCcHHHHHHHHHHHHHhc--CCeeEEEEEEEEEecceeecccCCCCCCCCCCCC
Q 002104 177 CIFAYGQTGTGKSFTMEGT----PDSPGIVPRAIEAIFKQAMES--NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLP 250 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM~G~----~e~pGIIPRale~LF~~i~e~--~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~ 250 (966)
||||||||||||||||+|+ ++++|||||++++||+.+... ...|.|+|||+|||||+|+|||.+..
T Consensus 83 tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~-------- 154 (355)
T 1goj_A 83 TVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQN-------- 154 (355)
T ss_dssp EEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTC--------
T ss_pred eEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCcc--------
Confidence 9999999999999999996 467899999999999998653 45899999999999999999997643
Q ss_pred CcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCcCccccceeEEE
Q 002104 251 PCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLV 330 (966)
Q Consensus 251 ~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~~~~~~SKL~LV 330 (966)
..+.|++++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.+...+....|+|+||
T Consensus 155 ~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lV 234 (355)
T 1goj_A 155 DNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLV 234 (355)
T ss_dssp CSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred CCceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCCCceeeeEEEEE
Confidence 24789999999999999999999999999999999999999999999999999999999999988777777788999999
Q ss_pred eccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhC-CCCCCCCCCccccccccccCCCcceeEEEecCCCCCCH
Q 002104 331 DLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRR-KRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDL 409 (966)
Q Consensus 331 DLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k-~~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~ 409 (966)
|||||||+.++++.|.+++|+.+||+||++||+||.||+.+ ..||||||||||+||||+|||||+|+||+||||+..++
T Consensus 235 DLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~ 314 (355)
T 1goj_A 235 DLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYND 314 (355)
T ss_dssp ECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGH
T ss_pred ECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccH
Confidence 99999999999999999999999999999999999999985 58999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCcCCc
Q 002104 410 CETICSLNFATRVKSVHLGHEDS 432 (966)
Q Consensus 410 eETLsTLrFAsRaK~I~l~~~~~ 432 (966)
+||++||+||+|||.|++.+...
T Consensus 315 ~ETl~TL~fA~rak~I~n~~~vn 337 (355)
T 1goj_A 315 AETLSTLRFGMRAKSIKNKAKVN 337 (355)
T ss_dssp HHHHHHHHHHHHHHTCBCCCCCC
T ss_pred HHHHHHHHHHHHHhhccCCceeC
Confidence 99999999999999999876543
No 11
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=5.1e-87 Score=740.19 Aligned_cols=324 Identities=38% Similarity=0.573 Sum_probs=276.5
Q ss_pred cCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCC--ceEEEeCCCCCceeecceeeCCCCChHHHHHh-hHHHHHHHhcCC
Q 002104 98 DSKGNIRVFCRIRPISMGENFGRLRPVIAKDSS--NVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGY 174 (966)
Q Consensus 98 elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~--~v~l~~~~~k~k~F~FD~VF~p~asQedVF~e-V~PLV~svLdGy 174 (966)
..+|||||+|||||++..|...+...++.+++. ...+.. ..+.|.||+||+++++|++||+. +.|+|+++|+||
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~---~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~ 84 (365)
T 2y65_A 8 PAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI---AGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGY 84 (365)
T ss_dssp CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE---TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTC
T ss_pred CCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE---CCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCC
Confidence 468999999999999988865444445555442 222222 24789999999999999999998 599999999999
Q ss_pred cccEEeeccCCCCcceecccCC---CCCCcHHHHHHHHHHHHHhc--CCeeEEEEEEEEEecceeecccCCCCCCCCCCC
Q 002104 175 NACIFAYGQTGTGKSFTMEGTP---DSPGIVPRAIEAIFKQAMES--NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPL 249 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM~G~~---e~pGIIPRale~LF~~i~e~--~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~ 249 (966)
|+||||||||||||||||+|+. ..+|||||++++||+.+... +..|.|+|||+|||||+|+|||.+..
T Consensus 85 n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~------- 157 (365)
T 2y65_A 85 NGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSK------- 157 (365)
T ss_dssp CEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTC-------
T ss_pred ceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCc-------
Confidence 9999999999999999999965 45699999999999998653 56899999999999999999997542
Q ss_pred CCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCcCccccceeEE
Q 002104 250 PPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWL 329 (966)
Q Consensus 250 ~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~~~~~~SKL~L 329 (966)
..+.|++++.++++|.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|.+.+........|+|+|
T Consensus 158 -~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~l 236 (365)
T 2y65_A 158 -VNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYL 236 (365)
T ss_dssp -CSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEE
T ss_pred -CCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCCCEeEEEEEE
Confidence 3488999999999999999999999999999999999999999999999999999999999998887777778899999
Q ss_pred EeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhC-CCCCCCCCCccccccccccCCCcceeEEEecCCCCCC
Q 002104 330 VDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRR-KRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDD 408 (966)
Q Consensus 330 VDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k-~~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~ 408 (966)
||||||||+.++++.|.|++|+.+||+||++||+||.||+.+ +.||||||||||+||||+|||||+|+||+||||+..+
T Consensus 237 VDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~ 316 (365)
T 2y65_A 237 VDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFN 316 (365)
T ss_dssp EECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGG
T ss_pred EECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCC
Confidence 999999999999999999999999999999999999999987 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCcCCc
Q 002104 409 LCETICSLNFATRVKSVHLGHEDS 432 (966)
Q Consensus 409 ~eETLsTLrFAsRaK~I~l~~~~~ 432 (966)
++||++||+||+|||.|++.+...
T Consensus 317 ~~ETl~TL~fA~rak~I~n~~~~n 340 (365)
T 2y65_A 317 ESETKSTLDFGRRAKTVKNVVCVN 340 (365)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCE
T ss_pred HHHHHHHHHHHHHHhcccCcceeC
Confidence 999999999999999999766543
No 12
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=5.5e-87 Score=730.03 Aligned_cols=316 Identities=38% Similarity=0.584 Sum_probs=287.6
Q ss_pred cCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeCCCCCceeecceeeCCCCChHHHHHh-hHHHHHHHhcCCcc
Q 002104 98 DSKGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNA 176 (966)
Q Consensus 98 elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~~~k~k~F~FD~VF~p~asQedVF~e-V~PLV~svLdGyNv 176 (966)
..++||||+|||||++..|...+...++.+.+...+.. ..+.|.||+||+++++|++||+. ++|+|+++++|||+
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~----~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~ 79 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI----ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNG 79 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEE----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCE
T ss_pred CCCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEE----CCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeE
Confidence 45899999999999998875433333444444433322 25789999999999999999998 59999999999999
Q ss_pred cEEeeccCCCCcceecccCCC---CCCcHHHHHHHHHHHHHh--cCCeeEEEEEEEEEecceeecccCCCCCCCCCCCCC
Q 002104 177 CIFAYGQTGTGKSFTMEGTPD---SPGIVPRAIEAIFKQAME--SNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPP 251 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM~G~~e---~pGIIPRale~LF~~i~e--~~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~ 251 (966)
||||||||||||||||+|+.. .+|||||++++||+.+.. .+..|.|+|||+|||||+|+|||.+.. .
T Consensus 80 tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~--------~ 151 (325)
T 1bg2_A 80 TIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSK--------T 151 (325)
T ss_dssp EEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTC--------C
T ss_pred EEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCC--------C
Confidence 999999999999999999754 459999999999998864 456899999999999999999997542 3
Q ss_pred cceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCcCccccceeEEEe
Q 002104 252 CLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVD 331 (966)
Q Consensus 252 ~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~~~~~~SKL~LVD 331 (966)
.+.|++++.++++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.+........|+|+|||
T Consensus 152 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skl~lVD 231 (325)
T 1bg2_A 152 NLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVD 231 (325)
T ss_dssp SBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEE
T ss_pred CceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCCCcEEEEEEEEEE
Confidence 58899999999999999999999999999999999999999999999999999999999999887777777889999999
Q ss_pred ccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcceeEEEecCCCCCCHHH
Q 002104 332 LGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCE 411 (966)
Q Consensus 332 LAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~eE 411 (966)
||||||..++++.|.|++|+.+||+||++||+||.||+.++.||||||||||+||||+|||||+|+||+||||+..+++|
T Consensus 232 LAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~E 311 (325)
T 1bg2_A 232 LAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESE 311 (325)
T ss_dssp CCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHH
T ss_pred CCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 002104 412 TICSLNFATRVKSV 425 (966)
Q Consensus 412 TLsTLrFAsRaK~I 425 (966)
|++||+||+|||+|
T Consensus 312 Tl~TL~fa~rak~I 325 (325)
T 1bg2_A 312 TKSTLLFGQRAKTI 325 (325)
T ss_dssp HHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHhccC
Confidence 99999999999986
No 13
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=6.3e-86 Score=727.25 Aligned_cols=328 Identities=38% Similarity=0.587 Sum_probs=268.2
Q ss_pred CCCCEEEEEEeCCCCC-CcCCCCCCcEEEeC---C--C--ceEEEe--CCCCCceeecceeeCCCCChHHHHHhhHHHHH
Q 002104 99 SKGNIRVFCRIRPISM-GENFGRLRPVIAKD---S--S--NVLLKL--ADNKSKNYSFDKVFHPGSSQDEVFSEVEPVIK 168 (966)
Q Consensus 99 lkGnIRV~~RVRPl~~-~E~~~~~~~vv~~d---~--~--~v~l~~--~~~k~k~F~FD~VF~p~asQedVF~eV~PLV~ 168 (966)
+||||||||||||+.. .|.... .++.+. + . .+.+.. .....+.|.||+||+++++|++||++|.|+|+
T Consensus 1 lk~nIrV~vRvRP~~~~~e~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~ 78 (347)
T 1f9v_A 1 MRGNIRVYCRIRPALKNLENSDT--SLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQ 78 (347)
T ss_dssp --CEEEEEEEECCCCTTTCCCTT--EEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHHHHHHG
T ss_pred CCCCeEEEEEeCCCCcccccCCC--ceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHHHHHHHH
Confidence 5899999999999987 443221 222222 1 1 122222 12346789999999999999999999999999
Q ss_pred HHhcCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHh---cCCeeEEEEEEEEEecceeecccCCCCCCC
Q 002104 169 SVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME---SNHAFRISFSMLEIYLGSLKDLLVTQPTKA 245 (966)
Q Consensus 169 svLdGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e---~~~~f~VsVS~lEIYNE~V~DLL~~~~~~~ 245 (966)
++|+|||+||||||||||||||||+|+ ++|||||++++||+.+.. ..+.|.|+|||+|||||+|+|||.+.....
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 156 (347)
T 1f9v_A 79 SSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNK 156 (347)
T ss_dssp GGGGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC------
T ss_pred HhcCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccc
Confidence 999999999999999999999999995 579999999999998854 457899999999999999999998754321
Q ss_pred CC-CCCCcceeeec-CCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCcCccc
Q 002104 246 TD-PLPPCLSIHTE-PKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRRE 323 (966)
Q Consensus 246 ~~-~~~~~L~Ired-~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~~~~~ 323 (966)
.. .....+.|+++ ..++++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+.+...+...
T Consensus 157 ~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~ 236 (347)
T 1f9v_A 157 EDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHS 236 (347)
T ss_dssp -------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC--CCEE
T ss_pred cccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCCCcee
Confidence 10 11234677776 46789999999999999999999999999999999999999999999999999998877667778
Q ss_pred cceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCC---CCCCCCCCccccccccccCCCcceeEEE
Q 002104 324 KNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK---RHVPYRNSKLTQVLKDSLGEDSKTLMLV 400 (966)
Q Consensus 324 ~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~---~hIPYRdSKLTrLLqDSLGGNSKTlMIa 400 (966)
.|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+.++ .||||||||||+||||+|||||+|+|||
T Consensus 237 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~ 316 (347)
T 1f9v_A 237 YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFV 316 (347)
T ss_dssp EEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEE
T ss_pred eeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEE
Confidence 8999999999999999999999999999999999999999999998876 8999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhhhcccCcC
Q 002104 401 HVSPKEDDLCETICSLNFATRVKSVHLGHE 430 (966)
Q Consensus 401 ~ISPs~~~~eETLsTLrFAsRaK~I~l~~~ 430 (966)
||||+..+++||++||+||+||++|+++++
T Consensus 317 ~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 317 NISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp EECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred EeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 999999999999999999999999998763
No 14
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=1.1e-86 Score=736.21 Aligned_cols=329 Identities=37% Similarity=0.583 Sum_probs=273.7
Q ss_pred cCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCC--ceEEEeC----CCCCceeecceeeCCCCChHHHHHh-hHHHHHHH
Q 002104 98 DSKGNIRVFCRIRPISMGENFGRLRPVIAKDSS--NVLLKLA----DNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSV 170 (966)
Q Consensus 98 elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~--~v~l~~~----~~k~k~F~FD~VF~p~asQedVF~e-V~PLV~sv 170 (966)
+.++||||+|||||++..|.......++..++. .+.+... ....+.|.||+||+++++|++||+. ++|+|+++
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 84 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEV 84 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHH
Confidence 457999999999999987765444445555443 2333211 1235789999999999999999998 58999999
Q ss_pred hcCCcccEEeeccCCCCcceecccCCC-----------CCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEecceeecccC
Q 002104 171 LDGYNACIFAYGQTGTGKSFTMEGTPD-----------SPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLV 239 (966)
Q Consensus 171 LdGyNvcIfAYGQTGSGKTyTM~G~~e-----------~pGIIPRale~LF~~i~e~~~~f~VsVS~lEIYNE~V~DLL~ 239 (966)
|+|||+||||||||||||||||+|+.. .+|||||++++||+.+......|.|+|||+|||||+|+|||.
T Consensus 85 l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~DLL~ 164 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLN 164 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSSSEEEEEEEEEEEEETTEEEETTC
T ss_pred hCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhccCceEEEEEEEEEEeCceeeehhc
Confidence 999999999999999999999999754 369999999999999988888999999999999999999997
Q ss_pred CCCCCCCCCCCCcceeeecCC--CcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecC
Q 002104 240 TQPTKATDPLPPCLSIHTEPK--GGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDA 317 (966)
Q Consensus 240 ~~~~~~~~~~~~~L~Ired~~--ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~ 317 (966)
+.... ...+.+++++. ++++|.||+++.|.|++|++++|..|.++|++++|.||..|||||+||+|+|...+.
T Consensus 165 ~~~~~-----~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~ 239 (359)
T 1x88_A 165 PSSDV-----SERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKET 239 (359)
T ss_dssp TTSCT-----TCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEE
T ss_pred ccccc-----cccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecc
Confidence 65431 24588998874 789999999999999999999999999999999999999999999999999986542
Q ss_pred C---cCccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCc
Q 002104 318 P---ERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDS 394 (966)
Q Consensus 318 ~---~~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~hIPYRdSKLTrLLqDSLGGNS 394 (966)
. ......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+.+..||||||||||+||||+|||||
T Consensus 240 ~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns 319 (359)
T 1x88_A 240 TIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRT 319 (359)
T ss_dssp CTTSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSSSSS
T ss_pred cCCCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHhCCCC
Confidence 1 2234579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEecCCCCCCHHHHHHHHHHHHHhhhcccCcCC
Q 002104 395 KTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHED 431 (966)
Q Consensus 395 KTlMIa~ISPs~~~~eETLsTLrFAsRaK~I~l~~~~ 431 (966)
+|+||+||||+..+++||++||+||+|||+|++.|..
T Consensus 320 kt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~v 356 (359)
T 1x88_A 320 RTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEV 356 (359)
T ss_dssp EEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC-
T ss_pred eEEEEEEECCCcccHHHHHHHHHHHHHHhhccCccee
Confidence 9999999999999999999999999999999987653
No 15
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=9e-86 Score=726.52 Aligned_cols=324 Identities=34% Similarity=0.529 Sum_probs=280.7
Q ss_pred CCCEEEEEEeCCCCCCcCCCCCCcEEEe-CCCceEEEeCCCCCceeecceeeCCCCChHHHHHh-hHHHHHHHhcCCccc
Q 002104 100 KGNIRVFCRIRPISMGENFGRLRPVIAK-DSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNAC 177 (966)
Q Consensus 100 kGnIRV~~RVRPl~~~E~~~~~~~vv~~-d~~~v~l~~~~~k~k~F~FD~VF~p~asQedVF~e-V~PLV~svLdGyNvc 177 (966)
.|+|||+|||||++..|...+...++.+ .+...+.. ....+.|.||+||+++++|++||+. +.|+|+++|+|||+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~--~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~t 80 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQ--VDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGT 80 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEE--TTSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEE
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEE--CCCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccc
Confidence 6999999999999998865333222222 22223222 2346899999999999999999998 589999999999999
Q ss_pred EEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHhc-CCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcceee
Q 002104 178 IFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMES-NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIH 256 (966)
Q Consensus 178 IfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e~-~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~~L~Ir 256 (966)
|||||||||||||||+|+++++|||||++++||+.+... ...|.|+|||+|||||+|+|||.+... ...+.|+
T Consensus 81 ifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~------~~~l~i~ 154 (349)
T 1t5c_A 81 IFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQK------MKPLIIR 154 (349)
T ss_dssp EEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCT------TCCEEEE
T ss_pred eeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCC------CCCceEE
Confidence 999999999999999999999999999999999998653 568999999999999999999976532 2358999
Q ss_pred ecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCc-----CccccceeEEEe
Q 002104 257 TEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPE-----RRREKNKIWLVD 331 (966)
Q Consensus 257 ed~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~-----~~~~~SKL~LVD 331 (966)
+++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++.+... +....|+|+|||
T Consensus 155 ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVD 234 (349)
T 1t5c_A 155 EDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVD 234 (349)
T ss_dssp ETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEE
T ss_pred ECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999998765432 345679999999
Q ss_pred ccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCC--CCCCCCCCccccccccccCCCcceeEEEecCCCCCCH
Q 002104 332 LGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK--RHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDL 409 (966)
Q Consensus 332 LAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~--~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~ 409 (966)
||||||+.++++.|.|++|+.+||+||++||+||.||+.++ .||||||||||+||||+|||||+|+|||||||+ ++
T Consensus 235 LAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~ 312 (349)
T 1t5c_A 235 LAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SF 312 (349)
T ss_dssp CCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CS
T ss_pred CCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CH
Confidence 99999999999999999999999999999999999999875 699999999999999999999999999999997 58
Q ss_pred HHHHHHHHHHHHhhhcccCcCCch
Q 002104 410 CETICSLNFATRVKSVHLGHEDSN 433 (966)
Q Consensus 410 eETLsTLrFAsRaK~I~l~~~~~~ 433 (966)
+||++||+||+|||.|++.+....
T Consensus 313 ~ETlsTL~fA~rak~I~n~~~vn~ 336 (349)
T 1t5c_A 313 DETLTALQFASTAKYMKNTPYVNE 336 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCCE
T ss_pred HHHHHHHHHHHHHhhcccCceecc
Confidence 999999999999999998775543
No 16
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=4.4e-86 Score=734.08 Aligned_cols=332 Identities=38% Similarity=0.616 Sum_probs=279.7
Q ss_pred hhccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCC--CceEEEeCC----CCCceeecceeeCCCCChHHHHHh-hHHHH
Q 002104 95 EFLDSKGNIRVFCRIRPISMGENFGRLRPVIAKDS--SNVLLKLAD----NKSKNYSFDKVFHPGSSQDEVFSE-VEPVI 167 (966)
Q Consensus 95 ~l~elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~--~~v~l~~~~----~k~k~F~FD~VF~p~asQedVF~e-V~PLV 167 (966)
..++.++||||+|||||++..|.......++.++. ..+.+..+. ...+.|.||+||+++++|++||+. ++|+|
T Consensus 15 ~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv 94 (372)
T 3b6u_A 15 YFQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLV 94 (372)
T ss_dssp ------CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHH
T ss_pred ccCCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHH
Confidence 45678999999999999998876544445555543 334443322 245789999999999999999998 69999
Q ss_pred HHHhcCCcccEEeeccCCCCcceecccCC---CCCCcHHHHHHHHHHHHHh-cCCeeEEEEEEEEEecceeecccCCCCC
Q 002104 168 KSVLDGYNACIFAYGQTGTGKSFTMEGTP---DSPGIVPRAIEAIFKQAME-SNHAFRISFSMLEIYLGSLKDLLVTQPT 243 (966)
Q Consensus 168 ~svLdGyNvcIfAYGQTGSGKTyTM~G~~---e~pGIIPRale~LF~~i~e-~~~~f~VsVS~lEIYNE~V~DLL~~~~~ 243 (966)
+++|+|||+||||||||||||||||+|.. +++|||||++++||..+.. ....|.|+|||+|||||+|+|||.+...
T Consensus 95 ~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 174 (372)
T 3b6u_A 95 DSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQT 174 (372)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCTT
T ss_pred HHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCCC
Confidence 99999999999999999999999999965 4579999999999999865 4678999999999999999999976432
Q ss_pred CCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCC---cC
Q 002104 244 KATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP---ER 320 (966)
Q Consensus 244 ~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~---~~ 320 (966)
..+.|++++.++++|.||+++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|.+.+.. ..
T Consensus 175 -------~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~ 247 (372)
T 3b6u_A 175 -------KRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGEN 247 (372)
T ss_dssp -------CCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CC
T ss_pred -------CCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCc
Confidence 35889999999999999999999999999999999999999999999999999999999999876532 23
Q ss_pred ccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCC-CCCCCCCCccccccccccCCCcceeEE
Q 002104 321 RREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK-RHVPYRNSKLTQVLKDSLGEDSKTLML 399 (966)
Q Consensus 321 ~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~-~hIPYRdSKLTrLLqDSLGGNSKTlMI 399 (966)
....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.||+.++ .||||||||||+||||+|||||+|+||
T Consensus 248 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI 327 (372)
T 3b6u_A 248 HIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMV 327 (372)
T ss_dssp CEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEE
T ss_pred ceEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEE
Confidence 4567999999999999999999999999999999999999999999998865 699999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhhhcccCcCCch
Q 002104 400 VHVSPKEDDLCETICSLNFATRVKSVHLGHEDSN 433 (966)
Q Consensus 400 a~ISPs~~~~eETLsTLrFAsRaK~I~l~~~~~~ 433 (966)
+||||+..+++||++||+||+|||+|++.+....
T Consensus 328 a~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~ 361 (372)
T 3b6u_A 328 ANVGPASYNVEETLTTLRYANRAKNIKNKPRVNE 361 (372)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC
T ss_pred EEeCCcccCHHHHHHHHHHHHHHhhccccceecC
Confidence 9999999999999999999999999998776543
No 17
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=1.5e-85 Score=744.09 Aligned_cols=332 Identities=37% Similarity=0.598 Sum_probs=275.3
Q ss_pred hccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCc--eEEEeCC---------------CCCceeecceeeCC------
Q 002104 96 FLDSKGNIRVFCRIRPISMGENFGRLRPVIAKDSSN--VLLKLAD---------------NKSKNYSFDKVFHP------ 152 (966)
Q Consensus 96 l~elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~--v~l~~~~---------------~k~k~F~FD~VF~p------ 152 (966)
..+++|||||||||||++..|...+..+++.++... +.+..+. ...+.|+||+||++
T Consensus 33 ~~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~ 112 (443)
T 2owm_A 33 SKDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDE 112 (443)
T ss_dssp -CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTST
T ss_pred cCCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCc
Confidence 478999999999999999888655555666666543 2221111 13578999999976
Q ss_pred -CCChHHHHHhh-HHHHHHHhcCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHhc-----CCeeEEEEE
Q 002104 153 -GSSQDEVFSEV-EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMES-----NHAFRISFS 225 (966)
Q Consensus 153 -~asQedVF~eV-~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e~-----~~~f~VsVS 225 (966)
.++|++||+.+ .|+|+++|+|||+||||||||||||||||+|+++++|||||++++||..+... +..|.|+||
T Consensus 113 ~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS 192 (443)
T 2owm_A 113 HYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVS 192 (443)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEE
T ss_pred cCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEE
Confidence 48999999995 89999999999999999999999999999999999999999999999998653 568999999
Q ss_pred EEEEecceeecccCCCCCCCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCce
Q 002104 226 MLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSH 305 (966)
Q Consensus 226 ~lEIYNE~V~DLL~~~~~~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH 305 (966)
|+|||||+|+|||.+.... ..+..+.|++++.++++|.||+++.|.+++|++++|..|.++|++++|.||..|||||
T Consensus 193 ~lEIYnE~i~DLL~~~~~~---~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH 269 (443)
T 2owm_A 193 YFEVYNEHVRDLLAPVVPN---KPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSH 269 (443)
T ss_dssp EEEEETTEEEETTSCCCSS---CCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEE
T ss_pred EEEEECCEeeEccCccccC---CcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCe
Confidence 9999999999999874321 1234689999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEecC----CcCccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCC---------
Q 002104 306 CMIRISITCFDA----PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK--------- 372 (966)
Q Consensus 306 ~IftI~I~~~n~----~~~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~--------- 372 (966)
+||+|+|.+... .......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+.++
T Consensus 270 ~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~ 349 (443)
T 2owm_A 270 AVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSP 349 (443)
T ss_dssp EEEEEEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC-----------
T ss_pred EEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccc
Confidence 999999987542 1234467999999999999999999999999999999999999999999998643
Q ss_pred -------------CCCCCCCCccccccccccCCCcceeEEEecCCCCCCHHHHHHHHHHHHHhhhcccCcCCc
Q 002104 373 -------------RHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDS 432 (966)
Q Consensus 373 -------------~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~eETLsTLrFAsRaK~I~l~~~~~ 432 (966)
.||||||||||+||||+|||||+|+||+||||+ +++||++||+||+|||+|++.+...
T Consensus 350 ~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN 420 (443)
T 2owm_A 350 VKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVN 420 (443)
T ss_dssp --------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCC
T ss_pred cccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceec
Confidence 389999999999999999999999999999997 5999999999999999999876543
No 18
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=1.2e-85 Score=729.43 Aligned_cols=324 Identities=35% Similarity=0.576 Sum_probs=276.7
Q ss_pred CCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeCC---CCCceeecceeeCCC--------CChHHHHHhh-HHHH
Q 002104 100 KGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLAD---NKSKNYSFDKVFHPG--------SSQDEVFSEV-EPVI 167 (966)
Q Consensus 100 kGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~~---~k~k~F~FD~VF~p~--------asQedVF~eV-~PLV 167 (966)
.++|||+|||||++..|......+++..++..+.+.... ...+.|.||+||++. ++|++||+.+ +|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv 82 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEML 82 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHHH
Confidence 479999999999998886555556777777766554332 235789999999987 8999999995 8999
Q ss_pred HHHhcCCcccEEeeccCCCCcceecccCC--CCCCcHHHHHHHHHHHHHhc---CCeeEEEEEEEEEecceeecccCCCC
Q 002104 168 KSVLDGYNACIFAYGQTGTGKSFTMEGTP--DSPGIVPRAIEAIFKQAMES---NHAFRISFSMLEIYLGSLKDLLVTQP 242 (966)
Q Consensus 168 ~svLdGyNvcIfAYGQTGSGKTyTM~G~~--e~pGIIPRale~LF~~i~e~---~~~f~VsVS~lEIYNE~V~DLL~~~~ 242 (966)
+++|+|||+||||||||||||||||+|+. +++|||||++++||..+... ...|.|+|||+|||||+|+|||.+..
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 162 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKN 162 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTT
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccccc
Confidence 99999999999999999999999999984 57899999999999998753 46899999999999999999997643
Q ss_pred CCCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCc---
Q 002104 243 TKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPE--- 319 (966)
Q Consensus 243 ~~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~--- 319 (966)
. ..+.|++++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.....
T Consensus 163 ~-------~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~ 235 (366)
T 2zfi_A 163 K-------GNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETN 235 (366)
T ss_dssp C-------SCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTT
T ss_pred C-------CCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCC
Confidence 2 348999999999999999999999999999999999999999999999999999999999998754321
Q ss_pred -CccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhh------------CCCCCCCCCCcccccc
Q 002104 320 -RRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR------------RKRHVPYRNSKLTQVL 386 (966)
Q Consensus 320 -~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~------------k~~hIPYRdSKLTrLL 386 (966)
.....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+. +..||||||||||+||
T Consensus 236 ~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lL 315 (366)
T 2zfi_A 236 ITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLL 315 (366)
T ss_dssp CEEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHT
T ss_pred ccceeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHH
Confidence 234579999999999999999999999999999999999999999999986 3579999999999999
Q ss_pred ccccCCCcceeEEEecCCCCCCHHHHHHHHHHHHHhhhcccCcC
Q 002104 387 KDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHE 430 (966)
Q Consensus 387 qDSLGGNSKTlMIa~ISPs~~~~eETLsTLrFAsRaK~I~l~~~ 430 (966)
||+|||||+|+||+||||+..+++||++||+||+|||+|++.+.
T Consensus 316 qdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~ 359 (366)
T 2zfi_A 316 RENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVS 359 (366)
T ss_dssp GGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC-------
T ss_pred HHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCC
Confidence 99999999999999999999999999999999999999997653
No 19
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=5.9e-86 Score=733.52 Aligned_cols=329 Identities=39% Similarity=0.569 Sum_probs=273.5
Q ss_pred ccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCc-eEEEe--CCCCCceeecceeeCCCCChHHHHHh-hHHHHHHHhc
Q 002104 97 LDSKGNIRVFCRIRPISMGENFGRLRPVIAKDSSN-VLLKL--ADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLD 172 (966)
Q Consensus 97 ~elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~-v~l~~--~~~k~k~F~FD~VF~p~asQedVF~e-V~PLV~svLd 172 (966)
.+.++||||||||||++..|.......++.+.+.. +++.. .....+.|.||+||+++++|++||+. ++|+|+++|+
T Consensus 19 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~ 98 (373)
T 2wbe_C 19 KKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLN 98 (373)
T ss_dssp CCCCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHHHhC
Confidence 46789999999999999887543333445544443 33322 12346789999999999999999998 6999999999
Q ss_pred CCcccEEeeccCCCCcceecccCCC-----------CCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEecceeecccCCC
Q 002104 173 GYNACIFAYGQTGTGKSFTMEGTPD-----------SPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQ 241 (966)
Q Consensus 173 GyNvcIfAYGQTGSGKTyTM~G~~e-----------~pGIIPRale~LF~~i~e~~~~f~VsVS~lEIYNE~V~DLL~~~ 241 (966)
|||+||||||||||||||||+|+.. ++|||||++++||+.+......|.|+|||+|||||+|+|||.+.
T Consensus 99 G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 178 (373)
T 2wbe_C 99 GYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELCDLLSTD 178 (373)
T ss_dssp TCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEETTEEEESSCTT
T ss_pred CceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhcCceEEEEEEEEEEeCCeEEECCCCC
Confidence 9999999999999999999999754 67999999999999998888899999999999999999999764
Q ss_pred CCCCCCCCCCcceeeec--CCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCC-
Q 002104 242 PTKATDPLPPCLSIHTE--PKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP- 318 (966)
Q Consensus 242 ~~~~~~~~~~~L~Ired--~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~- 318 (966)
.. ..+.++++ ..|+++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|......
T Consensus 179 ~~-------~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~ 251 (373)
T 2wbe_C 179 DT-------TKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGI 251 (373)
T ss_dssp SC-------SCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCT
T ss_pred CC-------CCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCC
Confidence 32 24677777 468899999999999999999999999999999999999999999999999999875432
Q ss_pred --cCccccceeEEEeccCCccccccccc-chhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcc
Q 002104 319 --ERRREKNKIWLVDLGGSERVLKTKAR-GRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSK 395 (966)
Q Consensus 319 --~~~~~~SKL~LVDLAGSER~~kt~a~-G~rlkEa~~INkSLsALG~VI~ALs~k~~hIPYRdSKLTrLLqDSLGGNSK 395 (966)
......|+|+|||||||||+.++++. |.|++|+.+||+||++||+||.||+.+..||||||||||+||||+|||||+
T Consensus 252 ~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnsk 331 (373)
T 2wbe_C 252 EGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLGGRTK 331 (373)
T ss_dssp TTCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTHHHHHSSSE
T ss_pred CCCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHHHHHHHHhCCCce
Confidence 22345799999999999999999987 999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCCCCCCHHHHHHHHHHHHHhhhcccCcCCc
Q 002104 396 TLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDS 432 (966)
Q Consensus 396 TlMIa~ISPs~~~~eETLsTLrFAsRaK~I~l~~~~~ 432 (966)
|+||+||||+..+++||++||+||+|||+|++.|...
T Consensus 332 t~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN 368 (373)
T 2wbe_C 332 TSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVN 368 (373)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCC
T ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceec
Confidence 9999999999999999999999999999999877543
No 20
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=9.1e-86 Score=734.37 Aligned_cols=341 Identities=32% Similarity=0.441 Sum_probs=274.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCce-EEEeCCC--------CCc
Q 002104 72 KDELATLSACINQLNIQRRQILNEFLDSKGNIRVFCRIRPISMGENFGRLRPVIAKDSSNV-LLKLADN--------KSK 142 (966)
Q Consensus 72 ~~El~~l~~~~~~~~~eRk~L~N~l~elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v-~l~~~~~--------k~k 142 (966)
.+|+..+.++++.....|+.++++..+ ++||||+|||||++..|.......++.+++... ++..+.. ..+
T Consensus 23 ~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~ 101 (387)
T 2heh_A 23 NWEFARMIKEFRATLECHPLTMTDPIE-EHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQ 101 (387)
T ss_dssp CHHHHHHHHHHHHHCCCBCCCTTSCCC-CCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEE
T ss_pred CHhHHHHHHHHHHhhccCCCccCCCCC-CCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCcccccccccccc
Confidence 456666666666666678888888877 999999999999998876544444555554443 3322111 246
Q ss_pred eeecceeeCCCCChHHHHHh-hHHHHHHHhcCCcccEEeeccCCCCcceecccC------CCCCCcHHHHHHHHHHHHHh
Q 002104 143 NYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT------PDSPGIVPRAIEAIFKQAME 215 (966)
Q Consensus 143 ~F~FD~VF~p~asQedVF~e-V~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~------~e~pGIIPRale~LF~~i~e 215 (966)
.|.||+||+++++|++||+. ++|+|+++|+|||+||||||||||||||||+|+ ..++||+||++++||..+..
T Consensus 102 ~F~FD~VF~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~ 181 (387)
T 2heh_A 102 AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQ 181 (387)
T ss_dssp EEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTS
T ss_pred EEeeeEEEecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhc
Confidence 89999999999999999998 599999999999999999999999999999996 35789999999999998753
Q ss_pred ---cCCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhccccccc
Q 002104 216 ---SNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRST 292 (966)
Q Consensus 216 ---~~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~t 292 (966)
....|.|+|||+|||||+|+|||.+. ..+.|++++.++++|.||+++.|.|++|++++|..|.++|++
T Consensus 182 ~~~~~~~~~V~vS~~EIYnE~v~DLL~~~---------~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~ 252 (387)
T 2heh_A 182 PCYRKLGLEVYVTFFEIYNGKLFDLLNKK---------AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTS 252 (387)
T ss_dssp HHHHTTTCEEEEEEEEEETTEEEETTTTT---------EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC--
T ss_pred ccccCceEEEEEEEEEecCCeEEECCCCC---------ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCc
Confidence 36789999999999999999999753 248899999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCceeEEEEEEEEecCCcCccccceeEEEeccCCccccccc-ccchhHHHHHHhhhhHHHHHHHHHHHhhC
Q 002104 293 ASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTK-ARGRRLDEGKAINLSLSALGDVIYALQRR 371 (966)
Q Consensus 293 asT~~N~~SSRSH~IftI~I~~~n~~~~~~~~SKL~LVDLAGSER~~kt~-a~G~rlkEa~~INkSLsALG~VI~ALs~k 371 (966)
++|.+|..|||||+||+|+|.+. ....|+|+|||||||||..+++ +.+.+++|+.+||+||++||+||.||+.+
T Consensus 253 ~~T~~N~~SSRSH~Ifti~v~~~-----~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~ 327 (387)
T 2heh_A 253 GQTFANSNSSRSHACFQIILRAK-----GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN 327 (387)
T ss_dssp -------CGGGSEEEEEEEEESS-----SSEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCcCcCCcccceEEEEEEEEEC-----CeeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999864 2367999999999999998876 46788899999999999999999999999
Q ss_pred CCCCCCCCCccccccccc-cCCCcceeEEEecCCCCCCHHHHHHHHHHHHHhhhccc
Q 002104 372 KRHVPYRNSKLTQVLKDS-LGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 427 (966)
Q Consensus 372 ~~hIPYRdSKLTrLLqDS-LGGNSKTlMIa~ISPs~~~~eETLsTLrFAsRaK~I~l 427 (966)
+.||||||||||+||||+ |||||+|+|||||||+..+++||++||+||+|||+|+.
T Consensus 328 ~~hvPYRdSKLTrlLqdsllGgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~ 384 (387)
T 2heh_A 328 KAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSP 384 (387)
T ss_dssp CSCCCGGGSHHHHHTGGGGSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC---
T ss_pred CCCCCccccHHHHHHhhhccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcC
Confidence 999999999999999999 69999999999999999999999999999999999974
No 21
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=5e-85 Score=719.22 Aligned_cols=316 Identities=35% Similarity=0.580 Sum_probs=261.2
Q ss_pred CCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeCCCCCceeecceeeCCCCChHHHHHh-hHHHHHHHhcCCcccE
Q 002104 100 KGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACI 178 (966)
Q Consensus 100 kGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~~~k~k~F~FD~VF~p~asQedVF~e-V~PLV~svLdGyNvcI 178 (966)
+++|||+|||||++..|...+...++.+++....+.. +..+.|.||+||+++++|++||+. +.|+|+++|+|||+||
T Consensus 10 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~--~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~ti 87 (344)
T 4a14_A 10 EAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL--GRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATV 87 (344)
T ss_dssp CCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEE--TTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEE
T ss_pred ccceEEEEEecccchHHHhccCeeEEEEcCCCceEEe--cccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCeeE
Confidence 6899999999999988754443444444444333333 346899999999999999999998 6999999999999999
Q ss_pred EeeccCCCCcceecccC------CCCCCcHHHHHHHHHHHHHhc-CCeeEEEEEEEEEecceeecccCCCCCCCCCCCCC
Q 002104 179 FAYGQTGTGKSFTMEGT------PDSPGIVPRAIEAIFKQAMES-NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPP 251 (966)
Q Consensus 179 fAYGQTGSGKTyTM~G~------~e~pGIIPRale~LF~~i~e~-~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~ 251 (966)
||||||||||||||+|+ .+++|||||++++||+.+.+. ...|.|+|||+|||||+|+|||.+... ..
T Consensus 88 fAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~------~~ 161 (344)
T 4a14_A 88 FAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTA------SR 161 (344)
T ss_dssp EEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETTSSCCC------GG
T ss_pred EEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHHHhccc------cc
Confidence 99999999999999997 468999999999999998764 568999999999999999999976432 24
Q ss_pred cceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCC--------cCccc
Q 002104 252 CLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP--------ERRRE 323 (966)
Q Consensus 252 ~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~--------~~~~~ 323 (966)
.+.|++++.++++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.+.. .....
T Consensus 162 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~ 241 (344)
T 4a14_A 162 DIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLL 241 (344)
T ss_dssp GCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CEE
T ss_pred cceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCcccccee
Confidence 5899999999999999999999999999999999999999999999999999999999999876432 23446
Q ss_pred cceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhC---CCCCCCCCCccccccccccCCCcceeEEE
Q 002104 324 KNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRR---KRHVPYRNSKLTQVLKDSLGEDSKTLMLV 400 (966)
Q Consensus 324 ~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k---~~hIPYRdSKLTrLLqDSLGGNSKTlMIa 400 (966)
.|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+.+ ..||||||||||+||||+|||||+|+||+
T Consensus 242 ~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~ 321 (344)
T 4a14_A 242 VSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIA 321 (344)
T ss_dssp EEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEEE
T ss_pred eeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEEE
Confidence 799999999999999999999999999999999999999999999864 46999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhh
Q 002104 401 HVSPKEDDLCETICSLNFATRVK 423 (966)
Q Consensus 401 ~ISPs~~~~eETLsTLrFAsRaK 423 (966)
||||+..+++||++||+||+|||
T Consensus 322 ~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 322 CVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp EECCBGGGHHHHHHHHHHHHHTC
T ss_pred EeCCCccchhHHhhhhhhhhhcC
Confidence 99999999999999999999986
No 22
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=5.7e-85 Score=732.25 Aligned_cols=343 Identities=31% Similarity=0.435 Sum_probs=277.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCce-EEEeCCC--------CCc
Q 002104 72 KDELATLSACINQLNIQRRQILNEFLDSKGNIRVFCRIRPISMGENFGRLRPVIAKDSSNV-LLKLADN--------KSK 142 (966)
Q Consensus 72 ~~El~~l~~~~~~~~~eRk~L~N~l~elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v-~l~~~~~--------k~k 142 (966)
.+|+..+.+.++.....|+..+|+..+ ++||+|+|||||++..|.......++.+++... ++..+.. ..+
T Consensus 43 ~~~~~~~i~~~r~~~~~~~~~~~~~~~-~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~ 121 (410)
T 1v8k_A 43 NWEFARMIKEFRVTMECSPLTVTDPIE-EHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQ 121 (410)
T ss_dssp CHHHHHHHHHHHHHHTCCTTTTTCTTS-CCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEE
T ss_pred cHHHHHHHHHHHHhhccCCCccCCcCC-CCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccce
Confidence 456666666666666668888887776 899999999999998876544445566555443 3322111 236
Q ss_pred eeecceeeCCCCChHHHHHh-hHHHHHHHhcCCcccEEeeccCCCCcceecccCC------CCCCcHHHHHHHHHHHHHh
Q 002104 143 NYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTP------DSPGIVPRAIEAIFKQAME 215 (966)
Q Consensus 143 ~F~FD~VF~p~asQedVF~e-V~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~------e~pGIIPRale~LF~~i~e 215 (966)
.|.||+||+++++|++||+. +.|+|+++|+|||+||||||||||||||||+|+. .++|||||++++||..+..
T Consensus 122 ~F~FD~VF~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~ 201 (410)
T 1v8k_A 122 AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQ 201 (410)
T ss_dssp EEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTS
T ss_pred EEeeeEEEecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhh
Confidence 89999999999999999998 5999999999999999999999999999999963 4689999999999998753
Q ss_pred ---cCCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhccccccc
Q 002104 216 ---SNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRST 292 (966)
Q Consensus 216 ---~~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~t 292 (966)
....|.|+|||+|||||+|+|||.+. ..+.|++++.++++|.||+++.|.|++|++.+|..|.++|++
T Consensus 202 ~~~~~~~~~V~vS~lEIYnE~i~DLL~~~---------~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~ 272 (410)
T 1v8k_A 202 PRYRNLNLEVYVTFFEIYNGKVFDLLNKK---------AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTS 272 (410)
T ss_dssp HHHHTTCCEEEEEEEEEETTEEEETTTTT---------EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC-
T ss_pred hcccCccEEEEEEEEEeeCCEEEECCCCC---------CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCc
Confidence 36789999999999999999999753 248999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCceeEEEEEEEEecCCcCccccceeEEEeccCCccccccc-ccchhHHHHHHhhhhHHHHHHHHHHHhhC
Q 002104 293 ASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTK-ARGRRLDEGKAINLSLSALGDVIYALQRR 371 (966)
Q Consensus 293 asT~~N~~SSRSH~IftI~I~~~n~~~~~~~~SKL~LVDLAGSER~~kt~-a~G~rlkEa~~INkSLsALG~VI~ALs~k 371 (966)
++|.+|..|||||+||+|+|.+.. ...|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.||+.+
T Consensus 273 ~~T~~N~~SSRSH~Ifti~v~~~~-----~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~ 347 (410)
T 1v8k_A 273 GQTFANSNSSRSHACFQILLRTKG-----RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN 347 (410)
T ss_dssp -------CCCSSEEEEEEEEESSS-----SEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC-
T ss_pred ccccCCCCCCCceEEEEEEEEeCC-----cceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcC
Confidence 999999999999999999998642 367999999999999998876 46788899999999999999999999999
Q ss_pred CCCCCCCCCccccccccc-cCCCcceeEEEecCCCCCCHHHHHHHHHHHHHhhhcccCc
Q 002104 372 KRHVPYRNSKLTQVLKDS-LGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGH 429 (966)
Q Consensus 372 ~~hIPYRdSKLTrLLqDS-LGGNSKTlMIa~ISPs~~~~eETLsTLrFAsRaK~I~l~~ 429 (966)
+.||||||||||+||||| |||||+|+|||||||+..+++||++||+||+||++|.-.|
T Consensus 348 ~~hIPYRdSKLTrLLqdsllGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~ 406 (410)
T 1v8k_A 348 KAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHH 406 (410)
T ss_dssp -----CCCCHHHHHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC---
T ss_pred CCCCCcccchhHHHHhhcccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCC
Confidence 999999999999999999 6999999999999999999999999999999999997543
No 23
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=1.1e-84 Score=719.09 Aligned_cols=318 Identities=40% Similarity=0.627 Sum_probs=259.1
Q ss_pred CCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeC---------CCCCceeecceee--------CCCCChHHHHHhh
Q 002104 101 GNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLA---------DNKSKNYSFDKVF--------HPGSSQDEVFSEV 163 (966)
Q Consensus 101 GnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~---------~~k~k~F~FD~VF--------~p~asQedVF~eV 163 (966)
.||||+|||||++..|......+++..++..+++... .+..+.|.||+|| ++.++|++||+.+
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~ 80 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCL 80 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHh
Confidence 3899999999999888655555677777776655321 2346789999999 4568999999995
Q ss_pred -HHHHHHHhcCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHh---cCCeeEEEEEEEEEecceeecccC
Q 002104 164 -EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME---SNHAFRISFSMLEIYLGSLKDLLV 239 (966)
Q Consensus 164 -~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e---~~~~f~VsVS~lEIYNE~V~DLL~ 239 (966)
.|+|+++|+|||+||||||||||||||||+|+++++|||||++++||+.+.. ....|.|+|||+|||||+|+|||.
T Consensus 81 ~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 160 (354)
T 3gbj_A 81 GENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLD 160 (354)
T ss_dssp HHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC
T ss_pred hHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccC
Confidence 8999999999999999999999999999999999999999999999998854 346799999999999999999997
Q ss_pred CCCCCCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEec---
Q 002104 240 TQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFD--- 316 (966)
Q Consensus 240 ~~~~~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n--- 316 (966)
+... ...+.|++++.++++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+..
T Consensus 161 ~~~~------~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~ 234 (354)
T 3gbj_A 161 PKGS------RQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDV 234 (354)
T ss_dssp ------------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECT
T ss_pred CCCC------CcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEeccc
Confidence 6532 2358899999999999999999999999999999999999999999999999999999999998652
Q ss_pred -CCcCccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhh------CCCCCCCCCCccccccccc
Q 002104 317 -APERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR------RKRHVPYRNSKLTQVLKDS 389 (966)
Q Consensus 317 -~~~~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~------k~~hIPYRdSKLTrLLqDS 389 (966)
........|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+. +..||||||||||+||||+
T Consensus 235 ~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqds 314 (354)
T 3gbj_A 235 KSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDS 314 (354)
T ss_dssp TSCEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHH
T ss_pred CCCCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHH
Confidence 222334679999999999999999999999999999999999999999999985 4579999999999999999
Q ss_pred cCCCcceeEEEecCCCCCCHHHHHHHHHHHHHhhh
Q 002104 390 LGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKS 424 (966)
Q Consensus 390 LGGNSKTlMIa~ISPs~~~~eETLsTLrFAsRaK~ 424 (966)
|||||+|+||+||||+..+++||++||+||.||+.
T Consensus 315 LgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 315 LGGNSKTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp HSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred hCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999985
No 24
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-84 Score=715.59 Aligned_cols=320 Identities=37% Similarity=0.562 Sum_probs=254.7
Q ss_pred cCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCC-ceEEEeC----------CCCCceeecceeeCCCCChHHHHHhh-HH
Q 002104 98 DSKGNIRVFCRIRPISMGENFGRLRPVIAKDSS-NVLLKLA----------DNKSKNYSFDKVFHPGSSQDEVFSEV-EP 165 (966)
Q Consensus 98 elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~-~v~l~~~----------~~k~k~F~FD~VF~p~asQedVF~eV-~P 165 (966)
+.+|||||||||||+...|.. .+...++. .+.+... ....+.|.||+||+ +++|++||+.+ +|
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~p 95 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAHE----MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKD 95 (359)
T ss_dssp ---CCEEEEEEECCCSSCCTT----TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHH
T ss_pred CCCCCEEEEEEcCCCCccccc----ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHH
Confidence 568999999999999766532 12222222 2222221 12346799999997 68999999995 89
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceecccCCC---CCCcHHHHHHHHHHHHHh-cCCeeEEEEEEEEEecceeecccCCC
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTMEGTPD---SPGIVPRAIEAIFKQAME-SNHAFRISFSMLEIYLGSLKDLLVTQ 241 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM~G~~e---~pGIIPRale~LF~~i~e-~~~~f~VsVS~lEIYNE~V~DLL~~~ 241 (966)
+|+++|+|||+||||||||||||||||+|+.. ++|||||++++||+.+.. ....|.|+|||+|||||+|+|||++.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 175 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTL 175 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSSS
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEeccccccccccc
Confidence 99999999999999999999999999999754 489999999999998865 45689999999999999999999875
Q ss_pred CCCCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecC--Cc
Q 002104 242 PTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDA--PE 319 (966)
Q Consensus 242 ~~~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~--~~ 319 (966)
+... +....+.+++++. |++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+... ..
T Consensus 176 ~~~~--~~~~~~~~~~~~~-g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~ 252 (359)
T 3nwn_A 176 PYVG--PSVTPMTIVENPQ-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSE 252 (359)
T ss_dssp TTSC--TTTSCCEEEEETT-EEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC------
T ss_pred cccc--cccccceEEecCC-ceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccccC
Confidence 4422 2234467777765 69999999999999999999999999999999999999999999999999986543 33
Q ss_pred CccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhh-CCCCCCCCCCccccccccccCCCcceeE
Q 002104 320 RRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR-RKRHVPYRNSKLTQVLKDSLGEDSKTLM 398 (966)
Q Consensus 320 ~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~-k~~hIPYRdSKLTrLLqDSLGGNSKTlM 398 (966)
.....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||++ ++.||||||||||+||||+|||||+|+|
T Consensus 253 ~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~m 332 (359)
T 3nwn_A 253 EKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVL 332 (359)
T ss_dssp -CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEE
T ss_pred cccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEE
Confidence 445679999999999999999999999999999999999999999999986 4579999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHhhhc
Q 002104 399 LVHVSPKEDDLCETICSLNFATRVKSV 425 (966)
Q Consensus 399 Ia~ISPs~~~~eETLsTLrFAsRaK~I 425 (966)
||||||+..+++||++||+||+|||.|
T Consensus 333 I~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 333 VTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp EEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999987
No 25
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=1.1e-83 Score=712.05 Aligned_cols=322 Identities=36% Similarity=0.554 Sum_probs=257.0
Q ss_pred hhccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeC--CCceEEEeCC----------CCCceeecceeeCCCCChHHHHHh
Q 002104 95 EFLDSKGNIRVFCRIRPISMGENFGRLRPVIAKD--SSNVLLKLAD----------NKSKNYSFDKVFHPGSSQDEVFSE 162 (966)
Q Consensus 95 ~l~elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d--~~~v~l~~~~----------~k~k~F~FD~VF~p~asQedVF~e 162 (966)
.-.+++|||||||||||+...+. .++..+ ...+.+.... ...+.|.||+||+ +++|++||+.
T Consensus 17 ~~~~~~g~IrV~vRvRP~~~~~~-----~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~ 90 (358)
T 2nr8_A 17 RGSGTRKKVHAFVRVKPTDDFAH-----EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYET 90 (358)
T ss_dssp ------CCEEEEEEECCCSSCCT-----TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHH
T ss_pred CCCCCCCCeEEEEEcCCCCCCcc-----ceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHH
Confidence 34678999999999999865432 123332 2333333221 2246799999995 8999999999
Q ss_pred h-HHHHHHHhcCCcccEEeeccCCCCcceecccCCCC---CCcHHHHHHHHHHHHHhc-CCeeEEEEEEEEEecceeecc
Q 002104 163 V-EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDS---PGIVPRAIEAIFKQAMES-NHAFRISFSMLEIYLGSLKDL 237 (966)
Q Consensus 163 V-~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~e~---pGIIPRale~LF~~i~e~-~~~f~VsVS~lEIYNE~V~DL 237 (966)
+ +|+|+++|+|||+||||||||||||||||+|+.++ +|||||++++||+.+.+. ...|.|+|||+|||||+|+||
T Consensus 91 ~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DL 170 (358)
T 2nr8_A 91 VAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDL 170 (358)
T ss_dssp HTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEET
T ss_pred HHHHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeEC
Confidence 4 89999999999999999999999999999998764 899999999999998764 568999999999999999999
Q ss_pred cCCCCCCCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecC
Q 002104 238 LVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDA 317 (966)
Q Consensus 238 L~~~~~~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~ 317 (966)
|.+.+... +....+.|++++ .+++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.+.
T Consensus 171 L~~~~~~~--~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~ 247 (358)
T 2nr8_A 171 LSTLPYVG--PSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSR 247 (358)
T ss_dssp TSSSTTSC--TTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC--
T ss_pred cCCccccC--ccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEec
Confidence 98754321 223568899998 679999999999999999999999999999999999999999999999999987543
Q ss_pred --CcCccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhC-CCCCCCCCCccccccccccCCCc
Q 002104 318 --PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRR-KRHVPYRNSKLTQVLKDSLGEDS 394 (966)
Q Consensus 318 --~~~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k-~~hIPYRdSKLTrLLqDSLGGNS 394 (966)
.......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+.+ +.||||||||||+||||+|||||
T Consensus 248 ~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGns 327 (358)
T 2nr8_A 248 TLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNC 327 (358)
T ss_dssp -----CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSS
T ss_pred cCCCCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCC
Confidence 233446799999999999999999999999999999999999999999999875 57999999999999999999999
Q ss_pred ceeEEEecCCCCCCHHHHHHHHHHHHHhhhc
Q 002104 395 KTLMLVHVSPKEDDLCETICSLNFATRVKSV 425 (966)
Q Consensus 395 KTlMIa~ISPs~~~~eETLsTLrFAsRaK~I 425 (966)
+|+||+||||+..+++||++||+||+|||.|
T Consensus 328 kt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 328 NMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999986
No 26
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=2.1e-83 Score=710.22 Aligned_cols=316 Identities=30% Similarity=0.453 Sum_probs=270.0
Q ss_pred CEEEEEEeCCCCCCcCCCCCCcEEEeCCC-ceEEEeCC--------CCCceeecceeeCCCCChHHHHHh-hHHHHHHHh
Q 002104 102 NIRVFCRIRPISMGENFGRLRPVIAKDSS-NVLLKLAD--------NKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVL 171 (966)
Q Consensus 102 nIRV~~RVRPl~~~E~~~~~~~vv~~d~~-~v~l~~~~--------~k~k~F~FD~VF~p~asQedVF~e-V~PLV~svL 171 (966)
||||+|||||++..|.......++.+.++ .+.+..+. ...+.|.||+||+++++|++||+. ++|+|++++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 79999999999988865444444444433 34332211 124689999999999999999998 699999999
Q ss_pred c-CCcccEEeeccCCCCcceecccCC-----CCCCcHHHHHHHHHHHHHh--cCCeeEEEEEEEEEecceeecccCCCCC
Q 002104 172 D-GYNACIFAYGQTGTGKSFTMEGTP-----DSPGIVPRAIEAIFKQAME--SNHAFRISFSMLEIYLGSLKDLLVTQPT 243 (966)
Q Consensus 172 d-GyNvcIfAYGQTGSGKTyTM~G~~-----e~pGIIPRale~LF~~i~e--~~~~f~VsVS~lEIYNE~V~DLL~~~~~ 243 (966)
+ |||+||||||||||||||||+|+. +++|||||++++||..+.. ....|.|+|||+|||||+|+|||.+..
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~- 159 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK- 159 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC---
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCc-
Confidence 6 999999999999999999999974 6799999999999998864 456899999999999999999997542
Q ss_pred CCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCcCccc
Q 002104 244 KATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRRE 323 (966)
Q Consensus 244 ~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~~~~~ 323 (966)
.+.+++++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|...+. ...
T Consensus 160 --------~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~---~~~ 228 (360)
T 1ry6_A 160 --------MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINK---NTS 228 (360)
T ss_dssp -----------------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETTT---TEE
T ss_pred --------cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEeccC---Ccc
Confidence 256788999999999999999999999999999999999999999999999999999999987542 346
Q ss_pred cceeEEEeccCCcccccccccc-hhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcceeEEEec
Q 002104 324 KNKIWLVDLGGSERVLKTKARG-RRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHV 402 (966)
Q Consensus 324 ~SKL~LVDLAGSER~~kt~a~G-~rlkEa~~INkSLsALG~VI~ALs~k~~hIPYRdSKLTrLLqDSLGGNSKTlMIa~I 402 (966)
.|+|+|||||||||..++++.| .+++|+.+||+||++||+||.||+.++.||||||||||+||||+|||||+|+||+||
T Consensus 229 ~skL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~i 308 (360)
T 1ry6_A 229 LGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANI 308 (360)
T ss_dssp EEEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEE
T ss_pred eeEEEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEEEEEEe
Confidence 7999999999999999998876 578999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhcccCc
Q 002104 403 SPKEDDLCETICSLNFATRVKSVHLGH 429 (966)
Q Consensus 403 SPs~~~~eETLsTLrFAsRaK~I~l~~ 429 (966)
||+..+++||++||+||+|||+|++.+
T Consensus 309 sP~~~~~~ETlsTLrfA~rak~i~n~~ 335 (360)
T 1ry6_A 309 SPTISCCEQTLNTLRYSSRVKNKGNSK 335 (360)
T ss_dssp CCBGGGHHHHHHHHHHHHHHCC-----
T ss_pred CCCcccHHHHHHHHHHHHHHhhcccCc
Confidence 999999999999999999999998754
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=2.6e-81 Score=689.86 Aligned_cols=306 Identities=31% Similarity=0.499 Sum_probs=242.2
Q ss_pred cCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCC---CceEEEeCCCCCceeecceeeCCCCChHHHHHh-hHHHHHHHhcC
Q 002104 98 DSKGNIRVFCRIRPISMGENFGRLRPVIAKDS---SNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDG 173 (966)
Q Consensus 98 elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~---~~v~l~~~~~k~k~F~FD~VF~p~asQedVF~e-V~PLV~svLdG 173 (966)
+..++|||+|||||+...|.... ..++...+ ...+. . ..+.|.||+||+++++|++||+. +.|+|+++|+|
T Consensus 19 ~~~~~VrV~vRvRP~~~~e~~~~-~~~v~~~~~~~~~~~~-~---~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G 93 (344)
T 3dc4_A 19 AKLSAVRIAVREAPYRQFLGRRE-PSVVQFPPWSDGKSLI-V---DQNEFHFDHAFPATISQDEMYQALILPLVDKLLEG 93 (344)
T ss_dssp CCCSEEEEEEEECCCC--------CCSEECCSSSCSSEEE-E---TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCcccccCC-ceEEEecCCCCCceEE-e---cCcEEEcceEECCCCCHHHHHHhhccchhhHhhCC
Confidence 45789999999999987764433 33444432 22222 1 35789999999999999999998 69999999999
Q ss_pred CcccEEeeccCCCCcceecccCC------CCCCcHHHHHHHHHHHHHhc----CCeeEEEEEEEEEecceeecccCCCCC
Q 002104 174 YNACIFAYGQTGTGKSFTMEGTP------DSPGIVPRAIEAIFKQAMES----NHAFRISFSMLEIYLGSLKDLLVTQPT 243 (966)
Q Consensus 174 yNvcIfAYGQTGSGKTyTM~G~~------e~pGIIPRale~LF~~i~e~----~~~f~VsVS~lEIYNE~V~DLL~~~~~ 243 (966)
||+||||||||||||||||.|++ +++|||||++++||+.+... ...|.|+|||+|||||+|+|||.+.+.
T Consensus 94 ~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 173 (344)
T 3dc4_A 94 FQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPH 173 (344)
T ss_dssp CCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTT
T ss_pred CceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCC
Confidence 99999999999999999999874 56899999999999998643 246999999999999999999976542
Q ss_pred CCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCcCccc
Q 002104 244 KATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRRE 323 (966)
Q Consensus 244 ~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~~~~~ 323 (966)
.. .+ ...+.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|... ..
T Consensus 174 ~~------~~--------~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------~~ 233 (344)
T 3dc4_A 174 MP------MV--------AARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK------TH 233 (344)
T ss_dssp SB------CC--------SSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS------SC
T ss_pred Cc------cc--------cccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec------Cc
Confidence 11 01 112458899999999999999999999999999999999999999999999642 35
Q ss_pred cceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcceeEEEecC
Q 002104 324 KNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVS 403 (966)
Q Consensus 324 ~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~hIPYRdSKLTrLLqDSLGGNSKTlMIa~IS 403 (966)
.|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.||+.++.||||||||||+||||+|||||+|+||+|||
T Consensus 234 ~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgGnskt~mIa~is 313 (344)
T 3dc4_A 234 HSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACIS 313 (344)
T ss_dssp EEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSSTTCEEEEEEEEC
T ss_pred EEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHHhCCCCEEEEEEEeC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhcccC
Q 002104 404 PKEDDLCETICSLNFATRVKSVHLG 428 (966)
Q Consensus 404 Ps~~~~eETLsTLrFAsRaK~I~l~ 428 (966)
|+..+++||++||+||+||+.....
T Consensus 314 P~~~~~~ETlsTL~fA~ra~~~~~~ 338 (344)
T 3dc4_A 314 PHQCDLSETLSTLRFGTSAKAAALE 338 (344)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHTTT
T ss_pred CchhhHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999988643
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=2.2e-78 Score=718.85 Aligned_cols=331 Identities=39% Similarity=0.584 Sum_probs=261.3
Q ss_pred HhhhhhhccCCCCEEEEEEeC----CCCCCc-CCCCCCcEEEeC-------CCceEEEeC---CCCCceeecceeeCCCC
Q 002104 90 RQILNEFLDSKGNIRVFCRIR----PISMGE-NFGRLRPVIAKD-------SSNVLLKLA---DNKSKNYSFDKVFHPGS 154 (966)
Q Consensus 90 k~L~N~l~elkGnIRV~~RVR----Pl~~~E-~~~~~~~vv~~d-------~~~v~l~~~---~~k~k~F~FD~VF~p~a 154 (966)
+++-.++..+.+++||||||| |....| ..+...+.+... ...+++... ....+.|.||+||++++
T Consensus 363 ~~Aq~~~~~il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~ 442 (715)
T 4h1g_A 363 AAAQTNAAALKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQ 442 (715)
T ss_dssp HHHHHHHSSSSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSC
T ss_pred HHHHHHHHHHHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCC
Confidence 344556778899999999999 444333 333333333221 122333221 22467899999999999
Q ss_pred ChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHh---cCCeeEEEEEEEEEec
Q 002104 155 SQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME---SNHAFRISFSMLEIYL 231 (966)
Q Consensus 155 sQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e---~~~~f~VsVS~lEIYN 231 (966)
+|++||+.|.|+|+++|+|||+||||||||||||||||.| +++|||||++++||+.+.+ ....|.|+|||+||||
T Consensus 443 ~q~~v~~~~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g--~~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyn 520 (715)
T 4h1g_A 443 SNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSH--PTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYN 520 (715)
T ss_dssp CHHHHGGGTHHHHHHHHTTCCEEEEEESSTTSSHHHHHHC--TTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEET
T ss_pred CHHHHHHHHHHHHHHHhCCceEEEEccCCCCCchhhccCC--CCCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEEC
Confidence 9999999999999999999999999999999999999999 4679999999999998854 4568999999999999
Q ss_pred ceeecccCCCCCCCCCCCCCcceeee-cCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEE
Q 002104 232 GSLKDLLVTQPTKATDPLPPCLSIHT-EPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRI 310 (966)
Q Consensus 232 E~V~DLL~~~~~~~~~~~~~~L~Ire-d~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI 310 (966)
|+|+|||.+.... ...+.+++ +..|+++|.||+++.|.|++|++++|..|.++|++++|.+|.+|||||+||+|
T Consensus 521 e~i~DLl~~~~~~-----~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i 595 (715)
T 4h1g_A 521 EAIVDLLNPKIDP-----NTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFII 595 (715)
T ss_dssp TEEEESSSCCCCT-----TCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEE
T ss_pred CEEEECCCCCCCC-----CCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEE
Confidence 9999999865332 12355555 45667999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcCccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhh-CCCCCCCCCCccccccccc
Q 002104 311 SITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR-RKRHVPYRNSKLTQVLKDS 389 (966)
Q Consensus 311 ~I~~~n~~~~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~-k~~hIPYRdSKLTrLLqDS 389 (966)
+|.+.+........|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+. +..||||||||||||||||
T Consensus 596 ~~~~~~~~~~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~s 675 (715)
T 4h1g_A 596 DLQGYNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHS 675 (715)
T ss_dssp EEEEEETTTCCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGG
T ss_pred EEEEEecCCCCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhh
Confidence 999988777777889999999999999999999999999999999999999999999985 4589999999999999999
Q ss_pred cCCCcceeEEEecCCCCCCHHHHHHHHHHHHHhhhccc
Q 002104 390 LGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 427 (966)
Q Consensus 390 LGGNSKTlMIa~ISPs~~~~eETLsTLrFAsRaK~I~l 427 (966)
|||||+|+|||||||+..+++||++||+||+|||+|++
T Consensus 676 lggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~~ 713 (715)
T 4h1g_A 676 LGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTRI 713 (715)
T ss_dssp TSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC---
T ss_pred cCCCceEEEEEEECCChhhHHHHHHHHHHHHHhcccee
Confidence 99999999999999999999999999999999999974
No 29
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.1e-33 Score=296.17 Aligned_cols=279 Identities=11% Similarity=0.164 Sum_probs=195.3
Q ss_pred HHHHHHHHHHhhhhhhccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeCCCCCceeecceeeCCCCChH--H
Q 002104 81 CINQLNIQRRQILNEFLDSKGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQD--E 158 (966)
Q Consensus 81 ~~~~~~~eRk~L~N~l~elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~~~k~k~F~FD~VF~p~asQe--d 158 (966)
++.++...||+|||.|+|+||||||||||||....+ .+.+...+..+.+ . ...+.|.||+||+|.++|+ +
T Consensus 4 K~eqE~~~RRkL~NsI~ELKGnIRVFcrvrp~~~p~-----~~~v~y~~~~I~v--~-~~~k~f~FDRVf~p~s~Qe~~~ 75 (298)
T 2o0a_A 4 TVEKELLRSRRLENSIIEQKGTMRCYAYVMEQNLPE-----NLLFDYENGVITQ--G-LSEHVYKFNRVIPHLKVSEDKF 75 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEEEEEECGGGSCT-----TEEEETTTTEEEE--T-TTCCEEECSEEEETTTSCHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhhCceEEEEEeccccCCc-----cceeecCccceee--c-CCCceEEeeeEECccccccHHH
Confidence 456677789999999999999999999999965211 1234555544332 2 2348999999999999999 9
Q ss_pred HHHhhHHHHHHHhc-CCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHh-cCCeeEEEEEEEEEe-cceee
Q 002104 159 VFSEVEPVIKSVLD-GYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME-SNHAFRISFSMLEIY-LGSLK 235 (966)
Q Consensus 159 VF~eV~PLV~svLd-GyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e-~~~~f~VsVS~lEIY-NE~V~ 235 (966)
||+++.++|+++|+ |||+||||||||||||| ||++..+|..... ..+.|.+++||+||| ||.++
T Consensus 76 vf~E~~~~i~scLd~GyNvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~~~~~Y~~tlq~veLy~Ne~~~ 142 (298)
T 2o0a_A 76 FTQEYSVYHDMCLNQKKNFNLISLSTTPHGSL-------------RESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQ 142 (298)
T ss_dssp HHHTTHHHHHHHHHTTCCEEEEEECSSCCHHH-------------HHHHHHHHHSTTSHHHHHEEEEEEEEEEECC-CEE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECCCCCCcc-------------HHHHHHHHHHhhhhcccceEEEEEEEEEecCCchH
Confidence 99999999999999 99999999999999999 9999999987633 338999999999999 99999
Q ss_pred cccCCCCCCCCCCCCCcceeeecCCCcEEecCcEEEEecC-HHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEE
Q 002104 236 DLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVND-FNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITC 314 (966)
Q Consensus 236 DLL~~~~~~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S-~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~ 314 (966)
|||...+.. ..++|+.+.+|...|.|++.+.|.+ ++|+..++..+.. +..|. +.-.|+.+.+..
T Consensus 143 DLL~~~~~~------~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~------~~~~~---~gi~i~k~~~~~ 207 (298)
T 2o0a_A 143 DMLLDYSHN------DKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEH------PNLPH---SGMGIIKVQFFP 207 (298)
T ss_dssp ETTSCCC------------CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEE
T ss_pred HhcCCCCCC------CcceEEecCCCCEEecccEEEEccccHHHHHHHhhcccc------cccCC---CCceEEEEEEec
Confidence 999744332 1468888999999999999999999 9998887733322 12221 234566666665
Q ss_pred ecCCc---CccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccC
Q 002104 315 FDAPE---RRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLG 391 (966)
Q Consensus 315 ~n~~~---~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~hIPYRdSKLTrLLqDSLG 391 (966)
.+..- .....--++|+.+.-.. +...|.+. +..+ -+-.|+++-+|+--|
T Consensus 208 ~~~~~~~~~~~~~~d~yf~e~~~~~--------------------~~~~l~~~---~~~~----~~~~spi~~il~~ll- 259 (298)
T 2o0a_A 208 RDSKSDGNNDPVPVDFYFIELNNLK--------------------SIEQFDKS---IFKK----ESCETPIALVLKKLI- 259 (298)
T ss_dssp SCC-------CCCEEEEEEEECSHH--------------------HHHHHHHH---HHTC-----CCCSHHHHHHHHHH-
T ss_pred CcccccccCCCCceEEEEEEeCCHH--------------------HHHHHHhh---cccc----cccCCcHHHHHHHHH-
Confidence 32211 11123346777665321 12223221 1112 345677787887666
Q ss_pred CCcceeEEEecCCCCCCHHHHHHHHHHHHHhhhccc
Q 002104 392 EDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 427 (966)
Q Consensus 392 GNSKTlMIa~ISPs~~~~eETLsTLrFAsRaK~I~l 427 (966)
-..|-++++++.-+..+ -.-|..+.++..+.+
T Consensus 260 ~~tks~~~~~l~~~~~~----~~lL~~s~~i~~~~~ 291 (298)
T 2o0a_A 260 SDTKSFFLLNLNDSKNV----NKLLTISEEVQTQLC 291 (298)
T ss_dssp HHSBCEEEEEECCGGGH----HHHHHHHHHHHHHTC
T ss_pred hcCcceEEEEecCCCch----hHHHHHHHHhhcccC
Confidence 45788999999865432 236778888777764
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.93 E-value=7e-27 Score=222.30 Aligned_cols=115 Identities=35% Similarity=0.497 Sum_probs=96.6
Q ss_pred hhhHHHHHHHHHHHhhCC-CCCCCCCCccccccccccCCCcceeEEEecCCCCCCHHHHHHHHHHHHHhhhcccCcCCch
Q 002104 355 NLSLSALGDVIYALQRRK-RHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDSN 433 (966)
Q Consensus 355 NkSLsALG~VI~ALs~k~-~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~eETLsTLrFAsRaK~I~l~~~~~~ 433 (966)
|+||++||+||.||+.++ .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||+.|+..+....
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 899999999999999874 7999999999999999999999999999999999999999999999999999997665433
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002104 434 EARDQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALT 475 (966)
Q Consensus 434 ~~~~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~ 475 (966)
.. ...++.+++++..+++..++..|+.|+.+++.++
T Consensus 81 ~~------~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 81 EL------TAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp CC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22 1234445555666677778888888888777653
No 31
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.93 E-value=7.6e-27 Score=216.59 Aligned_cols=82 Identities=43% Similarity=0.592 Sum_probs=77.0
Q ss_pred HHHhhhhHHHHHHHHHHHhhC-CCCCCCCCCccccccccccCCCcceeEEEecCCCCCCHHHHHHHHHHHHHhhhcccCc
Q 002104 351 GKAINLSLSALGDVIYALQRR-KRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGH 429 (966)
Q Consensus 351 a~~INkSLsALG~VI~ALs~k-~~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~eETLsTLrFAsRaK~I~l~~ 429 (966)
+++||+||++||+||.||+.+ ..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||+.|+..+
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~ 80 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV 80 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcc
Confidence 357999999999999999987 6899999999999999999999999999999999999999999999999999999766
Q ss_pred CCc
Q 002104 430 EDS 432 (966)
Q Consensus 430 ~~~ 432 (966)
...
T Consensus 81 ~~n 83 (100)
T 2kin_B 81 SVN 83 (100)
T ss_dssp CCE
T ss_pred eec
Confidence 544
No 32
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=97.99 E-value=7e-05 Score=81.72 Aligned_cols=268 Identities=14% Similarity=0.194 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeCCCCCceeecceeeCCC
Q 002104 74 ELATLSACINQLNIQRRQILNEFLDSKGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPG 153 (966)
Q Consensus 74 El~~l~~~~~~~~~eRk~L~N~l~elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~~~k~k~F~FD~VF~p~ 153 (966)
.....-.++.++...||+|-|.|.|+||.||+|+-+-+-..++. ..+...+..+. ..+..+.|.|++|++..
T Consensus 32 ~Yn~~~dKmeqE~lrRRkLENSIdElKG~IRcFAYi~~~~~p~~-----~~idY~~~~It---~~~~~~~y~FnRiIp~~ 103 (333)
T 4etp_B 32 FYNDTYNTVCKELLRSRRLENSIIEQKGTMRVYAYVMEQNLPEN-----LLFDYENGVIT---QGLSEHVYKFNRVIPHL 103 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSCCSS-----CEEETTTTEEE---C--CCCEEECSEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhcCcEEEEEEECcccCCcc-----EEEecccceEe---ecCCcceEEEeeeechh
Confidence 33334445666677899999999999999999999987433332 23344443332 23457899999999876
Q ss_pred C--ChHHHHHhhHHHHHHHh-cCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHhc----CCeeEEEEEE
Q 002104 154 S--SQDEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMES----NHAFRISFSM 226 (966)
Q Consensus 154 a--sQedVF~eV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e~----~~~f~VsVS~ 226 (966)
. .+.-+|++.+..++-++ .+.|+.||..|+.-- +..-..|+..+... .+.|.+.+.|
T Consensus 104 ~~~e~~~l~qE~q~y~DmcL~~~~NfslIsis~~~w----------------~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~ 167 (333)
T 4etp_B 104 KVSEDCFFTQEYSVYHDMALNQKKNFNLISLSTTPH----------------GSLRESLIKFLAEKDTIYQKQYVITLQF 167 (333)
T ss_dssp TCCHHHHHHHTTHHHHHHHHHTTCCEEEEEEESSCC----------------CHHHHHHHHHHHSTTCHHHHHEEEEEEE
T ss_pred hcchHHHHHHHHHHHHHHHHccCCCeeEEEecCCCc----------------HHHHHHHHHHHHhcccccccceEEEEEE
Confidence 5 56677788999999999 999999999987521 23444555555555 5789999999
Q ss_pred EEEecce-eecccCCCCCCCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCce
Q 002104 227 LEIYLGS-LKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSH 305 (966)
Q Consensus 227 lEIYNE~-V~DLL~~~~~~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH 305 (966)
+.+-++. ..|||.+..... ...-.+.|.+ ..+.+ +-..+.+.+..+.+.++.... +.-+-. ...-
T Consensus 168 V~Lse~~~S~DlL~~~~~~~--~~~I~lkiee---~sI~l-dS~~i~i~~~~~~l~~~~kl~-------~~~~~~-~~GI 233 (333)
T 4etp_B 168 VFLSDDEFSQDMLLDYSHND--KDSIKLKFEK---HSISL-DSKLVIIENGLEDLPLNFSAD-------EHPNLP-HSGM 233 (333)
T ss_dssp EECCSSSCCEESSCC------------CEEET---TEEEC-CSCCEEESSGGGGSCTTSSCC-------C---------C
T ss_pred EEEcCCCchhhhhccccccC--CCCceEEeec---ceEee-cceEEEeccccccchhhhccc-------cCCCCC-CCCc
Confidence 8888776 799997754211 1111233322 11222 223344444433222211000 000001 1133
Q ss_pred eEEEEEEEEecCC-c--CccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCcc
Q 002104 306 CMIRISITCFDAP-E--RRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKL 382 (966)
Q Consensus 306 ~IftI~I~~~n~~-~--~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~hIPYRdSKL 382 (966)
.|+.+.+...+.. + .....-..+||.+-+.. ....|.++|.-= -.-.|++
T Consensus 234 ~IlKfqf~~~~~~~~~n~~~~~~~fYFiEi~~~~--------------------ti~~l~~~i~~~-------~~~~spi 286 (333)
T 4etp_B 234 GIIKVQFFPRDSKSDGNNDPVPVDFYFIELNNLK--------------------SIEQFDKSIFKK-------ESAETPI 286 (333)
T ss_dssp EEEEEEEEECC--------CCCEEEEEEEECSHH--------------------HHHHHHSCC-----------CCCCHH
T ss_pred eEEEEEEEecCcccccccCCcceeEEEEEecChh--------------------HHHHHHhhcCcc-------cccCCCH
Confidence 4666666654432 0 01123467888877543 122232222210 1234556
Q ss_pred ccccccccCCCcceeEEEecCCCCC
Q 002104 383 TQVLKDSLGEDSKTLMLVHVSPKED 407 (966)
Q Consensus 383 TrLLqDSLGGNSKTlMIa~ISPs~~ 407 (966)
+-+|+--| -..|.++|+++.-...
T Consensus 287 ~~ilkkLl-~~TKS~flfnl~~~~~ 310 (333)
T 4etp_B 287 ALVLKKLI-SDTKSFFLLNLNDSKN 310 (333)
T ss_dssp HHHHHHHH-HHSBCEEEEEECCSTT
T ss_pred HHHHHHHH-hhCcceEEEEcCCcch
Confidence 66666555 4578899999987654
No 33
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.47 E-value=0.0077 Score=58.62 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=39.9
Q ss_pred ceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
+.++||.....+..|+++++.+..++.++--.....++-||++|+|||+.+.
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 4578888766666788999888888877644344567889999999999863
No 34
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.47 E-value=0.024 Score=55.88 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=37.2
Q ss_pred ceeecceeeCCCCChHHHHHhhHHHHHHHhcCCc-ccEEeeccCCCCcceec
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYN-ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyN-vcIfAYGQTGSGKTyTM 192 (966)
..++||.+...+..+..+++.+..++...-.++. ..|+-||++|+|||+.+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 4567888666555677788777667666544432 67899999999999875
No 35
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.82 E-value=0.9 Score=51.74 Aligned_cols=74 Identities=24% Similarity=0.468 Sum_probs=45.5
Q ss_pred eecceeeCCCCChHHHHHhh-HHHHH-HHhc--CC--cccEEeeccCCCCcceecc--------------cC---CCCCC
Q 002104 144 YSFDKVFHPGSSQDEVFSEV-EPVIK-SVLD--GY--NACIFAYGQTGTGKSFTME--------------GT---PDSPG 200 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV-~PLV~-svLd--Gy--NvcIfAYGQTGSGKTyTM~--------------G~---~e~pG 200 (966)
-+||-|-+-+.--+++.+.| .|+.. ..+. |. .-.|+-||++|+|||+..- |+ ....|
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~G 248 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLG 248 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccc
Confidence 56777766543333343333 23321 2222 32 3359999999999997652 11 23468
Q ss_pred cHHHHHHHHHHHHHhcC
Q 002104 201 IVPRAIEAIFKQAMESN 217 (966)
Q Consensus 201 IIPRale~LF~~i~e~~ 217 (966)
--.+.++.+|..+....
T Consensus 249 e~e~~ir~lF~~A~~~a 265 (428)
T 4b4t_K 249 EGPRMVRDVFRLARENA 265 (428)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 89999999999876543
No 36
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.13 E-value=0.07 Score=57.49 Aligned_cols=51 Identities=20% Similarity=0.377 Sum_probs=35.9
Q ss_pred eeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 143 NYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 143 ~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
.++||.+......+..++..+..++...-.+....|+-||++|+||||.+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 467887554443566677766666666544445678899999999999874
No 37
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.32 E-value=1.7 Score=49.23 Aligned_cols=74 Identities=24% Similarity=0.368 Sum_probs=47.1
Q ss_pred eecceeeCCCCChHHHHHhh-HHHHH-HHhc--CC--cccEEeeccCCCCcceecc--------------cC---CCCCC
Q 002104 144 YSFDKVFHPGSSQDEVFSEV-EPVIK-SVLD--GY--NACIFAYGQTGTGKSFTME--------------GT---PDSPG 200 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV-~PLV~-svLd--Gy--NvcIfAYGQTGSGKTyTM~--------------G~---~e~pG 200 (966)
-+||.|-+-+.--+++-+.| -|+.. ..+. |. .-.|+-||++|+|||...- |+ ....|
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vG 224 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIG 224 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccc
Confidence 46777766544444444443 45442 2333 32 3569999999999998652 11 23458
Q ss_pred cHHHHHHHHHHHHHhcC
Q 002104 201 IVPRAIEAIFKQAMESN 217 (966)
Q Consensus 201 IIPRale~LF~~i~e~~ 217 (966)
--.+.++.+|..+....
T Consensus 225 ese~~vr~lF~~Ar~~a 241 (405)
T 4b4t_J 225 EGSRMVRELFVMAREHA 241 (405)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHhC
Confidence 88999999999886543
No 38
>4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A
Probab=89.12 E-value=1.4 Score=47.57 Aligned_cols=264 Identities=16% Similarity=0.235 Sum_probs=126.6
Q ss_pred hhhhhccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeCCCCCceeecceeeCCC--CChHHHHHhhHHHHHH
Q 002104 92 ILNEFLDSKGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPG--SSQDEVFSEVEPVIKS 169 (966)
Q Consensus 92 L~N~l~elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~~~k~k~F~FD~VF~p~--asQedVF~eV~PLV~s 169 (966)
|-|.|.|+||.||.|+=+-+-...+. ..|...+.++. ..+..+.|.|+||.+.. ..++-+|++.++..+-
T Consensus 4 LeNSIdElkG~iRcFAYi~e~~l~~~-----~~IdY~~~tI~---~~~~~~~y~F~RiIp~~~~~e~~ll~qE~~~Y~Dm 75 (275)
T 4gkp_A 4 LLNSITELKGCARLFANIIEDEISEK-----LIVNYSDESIE---DMKNHKTYKFTKLIQNFSHQNKDLFKEDLHVYIDF 75 (275)
T ss_dssp ------------CEEEEEETTTSCTT-----EEEETTTTEEE---ETTTTEEEECSEEEEECSSSCCCGGGTHHHHHHHH
T ss_pred ccccHHHhcCcEEEEEEEccccCCcc-----EEEecccceec---cCCCccEEEEEeeeccccCCHHHHHHHHHHHHHHH
Confidence 55889999999999999966432221 23344444332 23446889999999654 3445566679999998
Q ss_pred Hh-cCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEecce-eecccCCCCCCCCC
Q 002104 170 VL-DGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGS-LKDLLVTQPTKATD 247 (966)
Q Consensus 170 vL-dGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e~~~~f~VsVS~lEIYNE~-V~DLL~~~~~~~~~ 247 (966)
+| .+.|..||..++.--+ -+--..++.+... -...|.+.+.++=+-.+. --|||........+
T Consensus 76 CL~k~~NfnlISiS~~~~~------------~lr~~ll~f~~~~---y~~~y~itlQ~V~Ls~~~~S~Dll~~~~~~~~d 140 (275)
T 4gkp_A 76 CLKRRENFNLFSVGSSNIP------------NTFEKLLAFFKNN---YFDKFVITLQYVMLSDNADSQDLLSNNKDGGKD 140 (275)
T ss_dssp HHHTTCCEEEEEECCSSCC------------SHHHHHHHHHHHH---TTTTEEEEEEEEEEC----CEETTCC-------
T ss_pred HhccCCCceEEEecCCCcH------------HHHHHHHHHHHHh---ccccceEEEEEEEecCCCcccccccCCccccCC
Confidence 88 7999999999875422 2444455554443 346788888888777544 46988665432211
Q ss_pred CCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCCCCCceeEEEEEEEEecCCcCcccccee
Q 002104 248 PLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKI 327 (966)
Q Consensus 248 ~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSH~IftI~I~~~n~~~~~~~~SKL 327 (966)
..+.++-+.+ .+.+. -+.+.+.+..+...+ .-..-+......-.|+++.+...+..+. ..-.+
T Consensus 141 ---~eI~Lk~e~~-sI~ld-S~~i~i~~~~~~~~~----------~~~~~~~~~~~Gi~IlKfq~~~~~~~e~--~pidf 203 (275)
T 4gkp_A 141 ---VEIKLKIEES-TISLG-STLITLDEITDKLQI----------KKKYSQLNHQNGIGLSKFQFFCLQDIEP--IPIDF 203 (275)
T ss_dssp ------CEEECSS-CEEEC-SCCEEGGGCCSCC------------CCSCC-----CCEEEEEEEEEETTCSSC--CCEEE
T ss_pred ---cceeEEeecc-eeeec-ceEEEeccCccccch----------hhhccCCCCCCCceEEEEEEEeccCCCC--CceeE
Confidence 1122222111 12211 112222221111110 0000111111223366666654432221 12267
Q ss_pred EEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCCccccccccccCCCcceeEEEecCCCCC
Q 002104 328 WLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKED 407 (966)
Q Consensus 328 ~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~hIPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~ 407 (966)
+||-+-+..- ..+|.+++. ... +-.|+++-+|+--| ...|-+++.++.-..
T Consensus 204 YFiei~~~~t--------------------~~~L~~~~s----~~~---~~~spi~~iLk~LL-~~TKS~flfni~~~~- 254 (275)
T 4gkp_A 204 YFIEIYQPSI--------------------YPILKRSTG----TES---NLNSPLEIVLKKIF-HDTKSAFVFQIDHSA- 254 (275)
T ss_dssp EEEEECCGGG--------------------HHHHHHC---------------CHHHHHHHHHH-HHSBCCEEEEESSCT-
T ss_pred EEEEecCHHH--------------------HHHHHhccC----CCC---CCCCcHHHHHHHHH-hcCcceEEEEccCcc-
Confidence 8888876431 122222211 000 11155665565544 567899999998653
Q ss_pred CHHHHHHHHHHHHHhhhccc
Q 002104 408 DLCETICSLNFATRVKSVHL 427 (966)
Q Consensus 408 ~~eETLsTLrFAsRaK~I~l 427 (966)
+.=..|..+.++..++.
T Consensus 255 ---n~~~lL~ls~~l~~~~~ 271 (275)
T 4gkp_A 255 ---EVYDILKLSSHLSFIRN 271 (275)
T ss_dssp ---THHHHHHHHHHHTTCCC
T ss_pred ---hHHHHHHHHHHhccccC
Confidence 23367888888888864
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=86.72 E-value=0.34 Score=51.88 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=34.9
Q ss_pred eeecceeeCCCCChHHHHHhhHHHHHHHhcCCcc--cEEeeccCCCCcceec
Q 002104 143 NYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNA--CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 143 ~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNv--cIfAYGQTGSGKTyTM 192 (966)
.+.||.+.+ |+.+...+..++..+-.|... .++-||++|+|||+..
T Consensus 40 ~~~~~~ivG----~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVG----QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccC----hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 456777776 566666666677777777764 8999999999999875
No 40
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.43 E-value=3.3 Score=47.23 Aligned_cols=75 Identities=19% Similarity=0.277 Sum_probs=47.9
Q ss_pred eeecceeeCCCCChHHHHHhh-HHHHH-HHhc--C--CcccEEeeccCCCCcceecc--------------cC---CCCC
Q 002104 143 NYSFDKVFHPGSSQDEVFSEV-EPVIK-SVLD--G--YNACIFAYGQTGTGKSFTME--------------GT---PDSP 199 (966)
Q Consensus 143 ~F~FD~VF~p~asQedVF~eV-~PLV~-svLd--G--yNvcIfAYGQTGSGKTyTM~--------------G~---~e~p 199 (966)
.-+||.|-+-+..-+++.+.| .|+.. ..+. | +.-.|+-||++|+|||++.. |+ ....
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~v 256 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYI 256 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCS
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhccc
Confidence 346777777554444555443 45441 2232 3 23468999999999997652 11 2346
Q ss_pred CcHHHHHHHHHHHHHhcC
Q 002104 200 GIVPRAIEAIFKQAMESN 217 (966)
Q Consensus 200 GIIPRale~LF~~i~e~~ 217 (966)
|--.+.++.+|..+....
T Consensus 257 Gese~~ir~lF~~A~~~a 274 (434)
T 4b4t_M 257 GEGAKLVRDAFALAKEKA 274 (434)
T ss_dssp SHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHhcC
Confidence 888999999999876543
No 41
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.52 E-value=0.24 Score=50.97 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=22.9
Q ss_pred eeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 143 NYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 143 ~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.|+||.+.+.+ .....+...+..+.. .+..|+-||.+|+|||+..
T Consensus 2 ~~~f~~~ig~~----~~~~~~~~~~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEA----NSFLEVLEQVSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCC----HHHHHHHHHHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCC----HHHHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 47888887643 344443333444333 3567889999999999764
No 42
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.01 E-value=0.34 Score=47.79 Aligned_cols=47 Identities=13% Similarity=0.379 Sum_probs=29.7
Q ss_pred eeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 143 NYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 143 ~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
.++||.++.. ..++.++..+..++. .+....|+-||++|+|||+.+.
T Consensus 24 ~~~~~~~~~~-~~~~~~~~~l~~~~~---~~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 24 DETFTSYYPA-AGNDELIGALKSAAS---GDGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp TCSTTTSCC---CCHHHHHHHHHHHH---TCSCSEEEEECSTTSSHHHHHH
T ss_pred CCChhhccCC-CCCHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 3567776552 334556555444433 2356678999999999998763
No 43
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.25 E-value=7.2 Score=44.52 Aligned_cols=74 Identities=23% Similarity=0.363 Sum_probs=45.2
Q ss_pred eecceeeCCCCChHHHHHhh-HHHH-HHHhc--CC--cccEEeeccCCCCcceecc--------------cC---CCCCC
Q 002104 144 YSFDKVFHPGSSQDEVFSEV-EPVI-KSVLD--GY--NACIFAYGQTGTGKSFTME--------------GT---PDSPG 200 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV-~PLV-~svLd--Gy--NvcIfAYGQTGSGKTyTM~--------------G~---~e~pG 200 (966)
.+||.|-+-+..-+++-+.| -|+- ...+. |. .-.|+-||++|+|||++.- |+ ....|
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~G 257 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIG 257 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSS
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccch
Confidence 55777766443333333333 3333 12332 32 3469999999999997652 11 23468
Q ss_pred cHHHHHHHHHHHHHhcC
Q 002104 201 IVPRAIEAIFKQAMESN 217 (966)
Q Consensus 201 IIPRale~LF~~i~e~~ 217 (966)
--.+.++.+|..+....
T Consensus 258 ese~~ir~~F~~A~~~~ 274 (437)
T 4b4t_L 258 ESARIIREMFAYAKEHE 274 (437)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 88999999999876543
No 44
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=83.48 E-value=0.5 Score=44.37 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=22.4
Q ss_pred hHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 163 VEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 163 V~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
+..++..+..+....|+-||++|+|||+.+
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 344445555566677899999999999876
No 45
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=83.02 E-value=0.54 Score=49.89 Aligned_cols=50 Identities=20% Similarity=0.432 Sum_probs=31.3
Q ss_pred ceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
..|+||..... ..+...+..+..++..-- +....++-||++|+|||+.+.
T Consensus 6 ~~~~f~~fv~g-~~~~~a~~~~~~~~~~~~-~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 6 PKYTLENFIVG-EGNRLAYEVVKEALENLG-SLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TTCCSSSCCCC-TTTHHHHHHHHHHHHTTT-TSCSSEEEECSSSSSHHHHHH
T ss_pred CCCCcccCCCC-CcHHHHHHHHHHHHhCcC-CCCCeEEEECCCCCcHHHHHH
Confidence 35889886532 334455555444444321 133578999999999998764
No 46
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.91 E-value=0.59 Score=47.93 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=33.3
Q ss_pred ceeecceeeCCCCChHHHHHhhHHH-----HHHHhcCCcccEEeeccCCCCcceec
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEVEPV-----IKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV~PL-----V~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
..+.||.+.+.+...+.+.+.+..+ ...+-......|+-||++|+|||+..
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 4578899998877766665544321 11111223445899999999999875
No 47
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.73 E-value=0.52 Score=48.68 Aligned_cols=51 Identities=25% Similarity=0.340 Sum_probs=29.4
Q ss_pred ceeecceeeCCCCChHHHHHhhH-HH-----HHHHhcCCcccEEeeccCCCCcceec
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEVE-PV-----IKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV~-PL-----V~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
..+.||.+.+.+..-+.+...+. ++ ....--.....|+-||++|+|||+..
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 35788888875433333333321 11 11111134456899999999999865
No 48
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=81.47 E-value=0.99 Score=50.92 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=35.3
Q ss_pred eeecceeeCCCCChHHHHHhhHHHHHHHhcCCc--ccEEeeccCCCCcceec
Q 002104 143 NYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYN--ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 143 ~F~FD~VF~p~asQedVF~eV~PLV~svLdGyN--vcIfAYGQTGSGKTyTM 192 (966)
.+.||.|.+ |+++.+.+..++..+..|.. ..|+-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 466777765 67787777777777777764 36888999999999865
No 49
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=80.72 E-value=0.57 Score=44.14 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=22.3
Q ss_pred hHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 163 VEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 163 V~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
+..++..+..+....|+-||++|+|||+.+
T Consensus 31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 31 IRRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 344455555566778899999999999865
No 50
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=80.39 E-value=0.62 Score=48.19 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=28.1
Q ss_pred cceeeCCCCChHHHHHhhHHHHHHHh---cCCcccEEeeccCCCCcceec
Q 002104 146 FDKVFHPGSSQDEVFSEVEPVIKSVL---DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 146 FD~VF~p~asQedVF~eV~PLV~svL---dGyNvcIfAYGQTGSGKTyTM 192 (966)
++.+++.....+.+......++..+- ......|+-||++|+|||+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHH
Confidence 34444433333344433222444443 556678999999999999865
No 51
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=80.31 E-value=0.94 Score=46.32 Aligned_cols=47 Identities=23% Similarity=0.324 Sum_probs=30.6
Q ss_pred ceeecceeeCCCCChHHHHHhhHHHHHHHhc---------CCcccEEeeccCCCCcceec
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLD---------GYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV~PLV~svLd---------GyNvcIfAYGQTGSGKTyTM 192 (966)
..+.||.|.+. +++.+.+..++..+.. .....|+-||++|+|||+.+
T Consensus 7 ~~~~~~~i~G~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 7 IKTTFADVAGC----DEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp SCCCGGGSCSC----HHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCHHHhcCc----HHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 35678888774 4555555444443221 12446899999999999865
No 52
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=78.51 E-value=0.7 Score=48.88 Aligned_cols=44 Identities=18% Similarity=0.398 Sum_probs=29.5
Q ss_pred ceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
..|.|+.+++. +.+... +...++.+....|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~----~~~~~~---l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQ----EDMKLA---LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSC----HHHHHH---HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccCh----HHHHHH---HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 46889998774 333322 333344445556999999999999865
No 53
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=78.44 E-value=0.7 Score=50.57 Aligned_cols=31 Identities=13% Similarity=0.048 Sum_probs=23.3
Q ss_pred hhHHHHHHHh-cCCcccEEeeccCCCCcceec
Q 002104 162 EVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 162 eV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 192 (966)
.+...+..++ .|...+|+-||++|+|||.++
T Consensus 31 ~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 31 RIFLPIYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 3444455554 567779999999999999875
No 54
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=78.24 E-value=1.1 Score=47.75 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=29.0
Q ss_pred ChHHHHHhhHHHHHHHhcCCc-c--cEEeeccCCCCcceec
Q 002104 155 SQDEVFSEVEPVIKSVLDGYN-A--CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 155 sQedVF~eV~PLV~svLdGyN-v--cIfAYGQTGSGKTyTM 192 (966)
.+++..+.+...+..++.|.. . +++-||++|+|||+++
T Consensus 21 gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 21 HREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 466677777777777776654 3 6899999999999875
No 55
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=77.88 E-value=0.65 Score=49.35 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=27.6
Q ss_pred CChHHHHHhhHHHHHHHhc-CCcccEEeeccCCCCcceec
Q 002104 154 SSQDEVFSEVEPVIKSVLD-GYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 154 asQedVF~eV~PLV~svLd-GyNvcIfAYGQTGSGKTyTM 192 (966)
..+++..+.+...+..++. +...+++-||++|+|||+++
T Consensus 22 ~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 22 PHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3456666666555555543 44568999999999999876
No 56
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=76.64 E-value=1.3 Score=46.08 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=16.1
Q ss_pred CCcccEEeeccCCCCcceec
Q 002104 173 GYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 173 GyNvcIfAYGQTGSGKTyTM 192 (966)
.....|+-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 33446999999999999865
No 57
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=76.03 E-value=1.1 Score=50.59 Aligned_cols=50 Identities=22% Similarity=0.440 Sum_probs=30.6
Q ss_pred CceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 141 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 141 ~k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
...|+||..... .++...+..+..++.. .|....++-||++|+|||+.+.
T Consensus 99 ~~~~tfd~fv~g-~~n~~a~~~~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 99 NPDYTFENFVVG-PGNSFAYHAALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CTTCSGGGCCCC-TTTHHHHHHHHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCCCChhhcCCC-CchHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 346889885432 2334445444444433 2313468999999999999874
No 58
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=74.87 E-value=0.96 Score=43.52 Aligned_cols=43 Identities=28% Similarity=0.497 Sum_probs=25.6
Q ss_pred ceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
..+.||.-+ +. .+.+++..+..+ .| -.++-||++|+|||+.+.
T Consensus 12 ~~~~~~~f~-~g-~n~~~~~~l~~~-----~g--~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 12 DYPSFDKFL-GT-ENAELVYVLRHK-----HG--QFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCCCCCCCC-SC-CTHHHHHHCCCC-----CC--SEEEEESSSTTTTCHHHH
T ss_pred CccchhhcC-cC-ccHHHHHHHHhc-----CC--CEEEEECCCCCCHHHHHH
Confidence 346666533 33 334444443322 33 356779999999999863
No 59
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=74.72 E-value=1.8 Score=43.85 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=28.8
Q ss_pred eecceeeCCCCChHHHHHhhHHHHHHHhc---------CCcccEEeeccCCCCcceec
Q 002104 144 YSFDKVFHPGSSQDEVFSEVEPVIKSVLD---------GYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV~PLV~svLd---------GyNvcIfAYGQTGSGKTyTM 192 (966)
..|+.|.+. +++-+.+..++..+.. .....|+-||++|+|||+..
T Consensus 3 ~~~~~i~G~----~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 3 VSFKDVAGM----HEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCTTSSCSC----HHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHhCCH----HHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHH
Confidence 356666653 4455555555544321 33456899999999999865
No 60
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=73.90 E-value=1.3 Score=43.88 Aligned_cols=24 Identities=38% Similarity=0.646 Sum_probs=19.6
Q ss_pred HHHHHhcCCcccEEeeccCCCCccee
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyT 191 (966)
.+..+++|.| ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 4566778876 68889999999987
No 61
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=73.85 E-value=1.2 Score=45.48 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=28.6
Q ss_pred ceeecceeeCCCCChHHHHHhhHHHHHH-----HhcCC----cccEEeeccCCCCcceec
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEVEPVIKS-----VLDGY----NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV~PLV~s-----vLdGy----NvcIfAYGQTGSGKTyTM 192 (966)
..++||.|.+.+ ++...+..++.. ++.+. ...|+-||++|+|||+.+
T Consensus 11 ~~~~~~~i~g~~----~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAE----EAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCH----HHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcH----HHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 457888887753 333333333322 22222 223899999999999876
No 62
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=73.62 E-value=1.4 Score=46.66 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=19.6
Q ss_pred HHHHHHHhc--CCc--ccEEeeccCCCCcceec
Q 002104 164 EPVIKSVLD--GYN--ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 164 ~PLV~svLd--GyN--vcIfAYGQTGSGKTyTM 192 (966)
..++...+. |.. ..|+-||++|+|||+..
T Consensus 21 ~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 21 VHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp HHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred HHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 455555543 222 36788999999999854
No 63
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=72.82 E-value=1.5 Score=42.70 Aligned_cols=25 Identities=40% Similarity=0.502 Sum_probs=18.9
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..+++|.| ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 4555677866 677889999999654
No 64
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=72.60 E-value=1.5 Score=42.68 Aligned_cols=24 Identities=29% Similarity=0.609 Sum_probs=18.7
Q ss_pred HHHHHhcCCcccEEeeccCCCCccee
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyT 191 (966)
.+..+++|.+ ++..++||||||.+
T Consensus 31 ~i~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 31 ALPLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHcCCCC--EEEECCCCChHHHH
Confidence 3455677876 67778999999987
No 65
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=71.33 E-value=1.3 Score=47.03 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=28.2
Q ss_pred eeecceeeCCCCChHHHHHhh-HHHHH-HHh----cCCcccEEeeccCCCCcceec
Q 002104 143 NYSFDKVFHPGSSQDEVFSEV-EPVIK-SVL----DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 143 ~F~FD~VF~p~asQedVF~eV-~PLV~-svL----dGyNvcIfAYGQTGSGKTyTM 192 (966)
.++||.|.+.+..-+.+.+.+ .|+.. ..+ -.....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 467888776443333333332 22110 111 123456899999999999765
No 66
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=71.30 E-value=1.8 Score=41.47 Aligned_cols=34 Identities=29% Similarity=0.403 Sum_probs=22.1
Q ss_pred hHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 156 QDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 156 QedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
++++.+.+...+. .+....++-||++|+|||+.+
T Consensus 22 ~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 22 QDEVIQRLKGYVE---RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CHHHHHHHHHHHH---TTCCCCEEEECSTTSSHHHHH
T ss_pred cHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 4455544444333 343345999999999999875
No 67
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=70.63 E-value=2.1 Score=44.48 Aligned_cols=47 Identities=13% Similarity=0.316 Sum_probs=28.9
Q ss_pred ceeecceeeCCCCChHHHHHhhHHHHHH------HhcC---CcccEEeeccCCCCcceec
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEVEPVIKS------VLDG---YNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV~PLV~s------vLdG---yNvcIfAYGQTGSGKTyTM 192 (966)
....||.|.+. +++-+.+...|.. .+.| ....|+-||++|+|||+..
T Consensus 16 ~~~~~~~i~G~----~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQ----DVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCC----HHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCCh----HHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 34678888774 4444443333222 1222 3567999999999999865
No 68
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=70.55 E-value=1.8 Score=45.07 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=28.7
Q ss_pred ceeecceeeCCCCChHHHHHhhHHHHHH-----HhcCC----cccEEeeccCCCCcceec
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEVEPVIKS-----VLDGY----NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV~PLV~s-----vLdGy----NvcIfAYGQTGSGKTyTM 192 (966)
..++||.|.+.+ ++...+..++.. ++.+. ...|+-||++|||||+.+
T Consensus 35 ~~~~~~~i~g~~----~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAE----EAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCH----HHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChH----HHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 457888887654 344433333322 22222 123899999999999876
No 69
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.17 E-value=1.7 Score=46.49 Aligned_cols=42 Identities=33% Similarity=0.623 Sum_probs=27.3
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
.|+.+++ |+++.+.+...|. .|.-..++-||+.|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~~L~~~i~---~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVITTVRKFVD---EGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHHHHHHHHH---TTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHHH
Confidence 4666664 5666555444433 4533337889999999999874
No 70
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=69.83 E-value=1.9 Score=46.06 Aligned_cols=38 Identities=21% Similarity=0.380 Sum_probs=28.5
Q ss_pred ChHHHHHhhHHHHHHHhcCC-cccEEeeccCCCCcceec
Q 002104 155 SQDEVFSEVEPVIKSVLDGY-NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 155 sQedVF~eV~PLV~svLdGy-NvcIfAYGQTGSGKTyTM 192 (966)
.+++..+.+...+..++.|. ..+|+-||++|+|||+++
T Consensus 24 gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 24 FREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 35667777766777766554 457999999999999865
No 71
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=69.71 E-value=2.4 Score=39.85 Aligned_cols=35 Identities=11% Similarity=0.220 Sum_probs=22.8
Q ss_pred HHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 158 EVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 158 dVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
.....+...+..+.. .+..|+-||++|+|||+...
T Consensus 11 ~~~~~l~~~~~~~~~-~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 11 AAIQEMNREVEAAAK-RTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp HHHHHHHHHHHHHHT-CSSCEEEEEETTCCHHHHHG
T ss_pred HHHHHHHHHHHHHhC-CCCcEEEECCCCccHHHHHH
Confidence 334444444554443 34568889999999998764
No 72
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=69.66 E-value=1.9 Score=43.54 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=19.4
Q ss_pred HHHHHhcCCcccEEeeccCCCCccee
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyT 191 (966)
.+..+++|.+ +++.++||||||.+
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 4566778877 68889999999986
No 73
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.58 E-value=29 Score=39.79 Aligned_cols=43 Identities=35% Similarity=0.506 Sum_probs=32.6
Q ss_pred cccEEeeccCCCCcceecc--------------cC---CCCCCcHHHHHHHHHHHHHhcC
Q 002104 175 NACIFAYGQTGTGKSFTME--------------GT---PDSPGIVPRAIEAIFKQAMESN 217 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM~--------------G~---~e~pGIIPRale~LF~~i~e~~ 217 (966)
--.|+-||+.|+|||.+.- |+ ....|--.+.++.+|..+....
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~a 275 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENA 275 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTC
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcC
Confidence 3579999999999997542 21 2346888999999999876543
No 74
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=68.50 E-value=2.5 Score=44.79 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=31.7
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHh--cCCcccEEeeccCCCCcceec
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVL--DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svL--dGyNvcIfAYGQTGSGKTyTM 192 (966)
.|+.+.+ ++.+...+...+..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG----~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 4666655 5677777766666664 344567999999999999765
No 75
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=68.48 E-value=1.3 Score=44.97 Aligned_cols=26 Identities=38% Similarity=0.681 Sum_probs=20.4
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
..+..++.|.| ++..++||||||.+.
T Consensus 59 ~ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 59 RAIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 35566778877 678999999999773
No 76
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=67.66 E-value=1.6 Score=46.25 Aligned_cols=37 Identities=24% Similarity=0.520 Sum_probs=24.5
Q ss_pred hHHHHHhhHHHHHHHhcC-CcccEEeeccCCCCcceec
Q 002104 156 QDEVFSEVEPVIKSVLDG-YNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 156 QedVF~eV~PLV~svLdG-yNvcIfAYGQTGSGKTyTM 192 (966)
+++..+.+...+..++.| ....++-||++|+|||+.+
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHH
Confidence 445555554444444433 3568999999999999765
No 77
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=67.34 E-value=2.7 Score=45.76 Aligned_cols=46 Identities=17% Similarity=0.306 Sum_probs=29.6
Q ss_pred eeecceeeCCCCChHHHHHhhHHHHHHH---------hcCCcccEEeeccCCCCcceec
Q 002104 143 NYSFDKVFHPGSSQDEVFSEVEPVIKSV---------LDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 143 ~F~FD~VF~p~asQedVF~eV~PLV~sv---------LdGyNvcIfAYGQTGSGKTyTM 192 (966)
...||.|.+ ++++.+.+..+|... +.+....|+-||++|+|||+..
T Consensus 80 ~~~~~~i~G----~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAG----VEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCS----CHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCC----hHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 456777766 455555544433321 2344567999999999999765
No 78
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=67.18 E-value=2.3 Score=42.67 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=18.9
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..++.|.+ ++..++||||||.+.
T Consensus 55 ~i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 55 TIGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 4455678877 567789999999863
No 79
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=66.66 E-value=3.1 Score=43.47 Aligned_cols=45 Identities=13% Similarity=0.252 Sum_probs=30.0
Q ss_pred eecceeeCCCCChHHHHHhhHHHHHHHh--cCCcccEEeeccCCCCcceec
Q 002104 144 YSFDKVFHPGSSQDEVFSEVEPVIKSVL--DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV~PLV~svL--dGyNvcIfAYGQTGSGKTyTM 192 (966)
..|+.+.+ +..+...+...+..+. .+....|+-||++|+|||+..
T Consensus 9 ~~~~~~ig----~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 9 KTLDEYIG----QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CSTTTCCS----CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred ccHHHhhC----HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 45666665 4555555555555543 245567889999999999765
No 80
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=65.40 E-value=2.4 Score=42.26 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=19.5
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..+++|.|+ +..++||||||.+.
T Consensus 50 ~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 50 AWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 45667788774 77789999999864
No 81
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=65.29 E-value=2.6 Score=41.64 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=19.2
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..+++|.| ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 4566678877 667789999999764
No 82
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=65.11 E-value=2 Score=44.47 Aligned_cols=25 Identities=32% Similarity=0.700 Sum_probs=19.5
Q ss_pred HHHHHHhcCCcccEEeeccCCCCccee
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyT 191 (966)
..+..++.|.| +++.++||||||.+
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHH
Confidence 34566677876 67889999999976
No 83
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=65.03 E-value=2.8 Score=45.96 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=29.6
Q ss_pred ceeecceeeCCCCChHHHHHhhHHHHHHHh------c---CCcccEEeeccCCCCcceec
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVL------D---GYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV~PLV~svL------d---GyNvcIfAYGQTGSGKTyTM 192 (966)
..+.||.|.+ ++.+-+.+..++...+ . .....|+-||++|+|||+..
T Consensus 110 ~~~~~~~iiG----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 110 TAVKFDDIAG----QDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCCGGGSCS----CHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCChHHhCC----HHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 4567888877 4445544433332211 2 22457999999999999765
No 84
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=64.16 E-value=1.4 Score=42.90 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=17.5
Q ss_pred HHHhcCCcccEEeeccCCCCcceec
Q 002104 168 KSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 168 ~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
..+++|.+ ++..++||+|||.+.
T Consensus 43 ~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 43 QPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCCHHHHH
Confidence 44556765 677899999999875
No 85
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=64.01 E-value=2.8 Score=42.58 Aligned_cols=25 Identities=36% Similarity=0.612 Sum_probs=18.9
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..+++|.| ++..++||||||.+.
T Consensus 53 ~i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 53 AIPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4456678877 567789999999764
No 86
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=63.63 E-value=3.5 Score=39.80 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=21.8
Q ss_pred hHHHHHhhHHHHHHHhcCC-cccEEeeccCCCCcceec
Q 002104 156 QDEVFSEVEPVIKSVLDGY-NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 156 QedVF~eV~PLV~svLdGy-NvcIfAYGQTGSGKTyTM 192 (966)
++.+.+.+...+. .|. ...++-||++|+|||+.+
T Consensus 28 ~~~~~~~l~~~l~---~~~~~~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 28 QEHVLTALANGLS---LGRIHHAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp CHHHHHHHHHHHH---HTCCCSEEEEECSTTSCHHHHH
T ss_pred cHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHH
Confidence 4445444443333 233 346899999999999865
No 87
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=63.58 E-value=4 Score=38.41 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=16.3
Q ss_pred CCcccEEeeccCCCCcceec
Q 002104 173 GYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 173 GyNvcIfAYGQTGSGKTyTM 192 (966)
..+..|+-||++|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45567899999999998754
No 88
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=63.54 E-value=3 Score=44.92 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=28.0
Q ss_pred eecceeeCCCCChHHHHHhhHHHHH------HHhcCC---cccEEeeccCCCCcceec
Q 002104 144 YSFDKVFHPGSSQDEVFSEVEPVIK------SVLDGY---NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV~PLV~------svLdGy---NvcIfAYGQTGSGKTyTM 192 (966)
.+||.|.+. +++-+.+...|. .++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~----~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGL----EGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSC----HHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCH----HHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 467777764 444444433332 233342 246899999999999865
No 89
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=63.49 E-value=2.7 Score=47.54 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=21.6
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
++..++..-...|.-.|+||||||.||.
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4455555556788999999999999874
No 90
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=62.88 E-value=3.4 Score=42.90 Aligned_cols=38 Identities=29% Similarity=0.398 Sum_probs=26.2
Q ss_pred ChHHHHHhhHHHHHHHhcCC------cccEEeeccCCCCcceec
Q 002104 155 SQDEVFSEVEPVIKSVLDGY------NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 155 sQedVF~eV~PLV~svLdGy------NvcIfAYGQTGSGKTyTM 192 (966)
.|..+.+.+...|.....|. ...++-||++|+|||++.
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHH
Confidence 46666666655555554332 357899999999999765
No 91
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=62.83 E-value=3.2 Score=44.71 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=25.3
Q ss_pred HHHHHhhHHHH-HHHhcC---CcccEEe--eccCCCCcceec
Q 002104 157 DEVFSEVEPVI-KSVLDG---YNACIFA--YGQTGTGKSFTM 192 (966)
Q Consensus 157 edVF~eV~PLV-~svLdG---yNvcIfA--YGQTGSGKTyTM 192 (966)
++..+.+...+ ..+..| ...+++- ||+.|+|||+.+
T Consensus 28 ~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 28 RGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp CHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 34444555555 666666 4567888 999999999865
No 92
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=62.24 E-value=3.7 Score=42.33 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.4
Q ss_pred cccEEeeccCCCCcceec
Q 002104 175 NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM 192 (966)
...|+-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457899999999999865
No 93
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=62.13 E-value=3.2 Score=44.17 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=20.9
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..++.|..--+++.++||||||.+.
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 456677884455789999999999763
No 94
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=61.81 E-value=3 Score=44.46 Aligned_cols=46 Identities=24% Similarity=0.453 Sum_probs=28.0
Q ss_pred eeecceeeCCCCChHHHHHhhHHHHH------HHhcCC---cccEEeeccCCCCcceec
Q 002104 143 NYSFDKVFHPGSSQDEVFSEVEPVIK------SVLDGY---NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 143 ~F~FD~VF~p~asQedVF~eV~PLV~------svLdGy---NvcIfAYGQTGSGKTyTM 192 (966)
...||.|.+ ++++-+.+..+|. ..+.+. ...|+-||++|+|||+..
T Consensus 14 ~~~~~di~G----~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAG----LEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCS----CHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcC----hHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 356787776 4445444433332 222222 346999999999999865
No 95
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=61.73 E-value=4.3 Score=42.10 Aligned_cols=41 Identities=20% Similarity=0.402 Sum_probs=26.9
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.|+.+.+ |+++.+.+...+. .|....++-||++|+|||++.
T Consensus 23 ~~~~~~g----~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 23 RLDDIVG----QEHIVKRLKHYVK---TGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp STTTCCS----CHHHHHHHHHHHH---HTCCCEEEEESCTTSSHHHHH
T ss_pred CHHHhhC----CHHHHHHHHHHHH---cCCCCeEEEECcCCCCHHHHH
Confidence 3555544 5666665554443 344334899999999999875
No 96
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=61.70 E-value=3 Score=42.25 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=18.3
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..+++|.| +++.++||||||.+.
T Consensus 59 ~i~~~~~g~~--~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 59 GWPVALSGLD--MVGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHHTCC--EEEEECTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCcCHHHHHH
Confidence 3455667876 566779999999873
No 97
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=61.65 E-value=3.3 Score=44.38 Aligned_cols=26 Identities=38% Similarity=0.681 Sum_probs=21.1
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
..+..++.|.+ ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 45677788888 678899999999873
No 98
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=60.77 E-value=2.8 Score=46.32 Aligned_cols=27 Identities=37% Similarity=0.474 Sum_probs=20.1
Q ss_pred HHHHhcCCcccEEeeccCCCCcceecc
Q 002104 167 IKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 167 V~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
+.+++.-..+.|.-.|+||||||.+|.
T Consensus 115 l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 115 FKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 344444455588889999999999873
No 99
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=60.73 E-value=3.5 Score=41.40 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=18.6
Q ss_pred HHHHHhcCCcccEEeeccCCCCccee
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyT 191 (966)
.+..+++|.| ++..++||||||.+
T Consensus 54 ~i~~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 54 AIPLGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 4455678877 56678999999976
No 100
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=60.46 E-value=3 Score=47.31 Aligned_cols=44 Identities=18% Similarity=0.378 Sum_probs=30.2
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
+||.|++ |+.+......+...+-.|.-..|+-||++|+|||+..
T Consensus 24 ~l~~ivG----q~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 24 NLAQYIG----QQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp STTTCCS----CHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CHHHhCC----cHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 3555544 6777754444544455565578999999999999865
No 101
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=59.79 E-value=3.7 Score=42.12 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=19.0
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..+++|.+ ++..++||||||.+.
T Consensus 73 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEcCCCCCchhHh
Confidence 4566678876 566779999999864
No 102
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=59.53 E-value=8.5 Score=35.02 Aligned_cols=45 Identities=24% Similarity=0.360 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhh
Q 002104 436 RDQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHS 480 (966)
Q Consensus 436 ~~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~ 480 (966)
++.......+++.++..|+.|+..|+.+|+.|+.++..|......
T Consensus 31 R~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 31 RDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556777888888888888888888888888777654433
No 103
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=59.35 E-value=4.7 Score=43.36 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=27.8
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHh-cC-CcccEEeeccCCCCcceec
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVL-DG-YNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svL-dG-yNvcIfAYGQTGSGKTyTM 192 (966)
.|+.+++ |+.+.+.+.-.|.... .| .--.++-||++|+|||+.+
T Consensus 23 ~l~~~~g----~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 23 SLDEFIG----QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH
T ss_pred cHHHccC----cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH
Confidence 5666665 4566666554444432 22 2234777999999999876
No 104
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=58.88 E-value=3.3 Score=42.03 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=18.8
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.++..+..|. .++..|+||||||..+
T Consensus 68 ~~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 3455566665 4678899999999754
No 105
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=57.97 E-value=5 Score=42.29 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=26.7
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCC-cccEEeeccCCCCcceecc
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGY-NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGy-NvcIfAYGQTGSGKTyTM~ 193 (966)
+||.+.+ |+++...+...+. .|. ...++-||++|+|||+++.
T Consensus 24 ~~~~ivg----~~~~~~~l~~~l~---~~~~~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 24 TIDECIL----PAFDKETFKSITS---KGKIPHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp STTTSCC----CHHHHHHHHHHHH---TTCCCSEEEECSSTTSSHHHHHH
T ss_pred CHHHHhC----cHHHHHHHHHHHH---cCCCCeEEEeeCcCCCCHHHHHH
Confidence 4566554 4555555544444 343 3567888999999998763
No 106
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=57.11 E-value=2.6 Score=41.83 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=18.2
Q ss_pred HHHHHhcCCcccEEeeccCCCCccee
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyT 191 (966)
.+..+++|.| ++..++||||||.+
T Consensus 34 ~i~~~~~~~~--~lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 34 IIPGALRGES--MVGQSQTGTGKTHA 57 (219)
T ss_dssp HHHHHHHTCC--EEEECCSSHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHH
Confidence 3455667876 46778999999986
No 107
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=57.11 E-value=4.5 Score=43.20 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=21.8
Q ss_pred HHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
..+..++.|.+..++..++||||||.+.
T Consensus 54 ~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 54 NALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 3556777875666788899999999873
No 108
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=56.40 E-value=4.2 Score=43.79 Aligned_cols=25 Identities=40% Similarity=0.700 Sum_probs=19.7
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..++.|.| ++..++||||||.+.
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHHH
Confidence 4566778877 677889999999764
No 109
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=56.29 E-value=4.6 Score=42.69 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=20.5
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..++.|....++..++||||||.+.
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 456667775456788899999999764
No 110
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=56.14 E-value=5.8 Score=42.54 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=24.0
Q ss_pred hHHHHHHHhcCC---cccEEeeccCCCCcceec
Q 002104 163 VEPVIKSVLDGY---NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 163 V~PLV~svLdGy---NvcIfAYGQTGSGKTyTM 192 (966)
+...+..+++|. .-||+-||+.|+|||+..
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 345678888887 348999999999998764
No 111
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=55.01 E-value=17 Score=32.40 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 002104 436 RDQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPA 478 (966)
Q Consensus 436 ~~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~ 478 (966)
++.......++++++..|+.|+..|+.+|+.|+.++..|....
T Consensus 31 R~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 31 RDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455677888888999999999999999999888876654
No 112
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=54.92 E-value=8.4 Score=40.86 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=26.5
Q ss_pred hHHHHHhhHHHHHHHhcCC-----cccEEeeccCCCCcceec
Q 002104 156 QDEVFSEVEPVIKSVLDGY-----NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 156 QedVF~eV~PLV~svLdGy-----NvcIfAYGQTGSGKTyTM 192 (966)
-+++...+..++..++.|+ ...|+..|++|||||+..
T Consensus 9 ~~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 9 DKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 3555555667777777664 246888999999998754
No 113
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=54.90 E-value=6.5 Score=41.73 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=24.0
Q ss_pred ChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 155 SQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 155 sQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.|+++.+.+...+.. ......++-||+.|+|||+++
T Consensus 20 g~~~~~~~L~~~l~~--~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 20 GQEHVLTALANGLSL--GRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp SCHHHHHHHHHHHHH--TCCCSEEEEESCTTSSHHHHH
T ss_pred CcHHHHHHHHHHHHh--CCCCeEEEEECCCCCCHHHHH
Confidence 356666655444432 223446899999999999876
No 114
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=54.46 E-value=4.7 Score=42.51 Aligned_cols=42 Identities=26% Similarity=0.376 Sum_probs=25.7
Q ss_pred eecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 144 YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
..|+.+.+.+. + +..+...+..|....++-||++|+|||+++
T Consensus 34 ~~~~~i~g~~~----~---~~~l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 34 KNLDEVTAQDH----A---VTVLKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp SSTTTCCSCCT----T---HHHHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred CCHHHhhCCHH----H---HHHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 34666665432 2 233333444554344899999999999876
No 115
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=53.81 E-value=4.7 Score=42.05 Aligned_cols=28 Identities=36% Similarity=0.584 Sum_probs=20.7
Q ss_pred HHHHHhcCC--cccEEeeccCCCCcceecc
Q 002104 166 VIKSVLDGY--NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 166 LV~svLdGy--NvcIfAYGQTGSGKTyTM~ 193 (966)
.+..++.|. .-+|+-||+.|+|||+...
T Consensus 47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 47 ALKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 345556663 3479999999999998754
No 116
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=53.59 E-value=7.2 Score=44.86 Aligned_cols=47 Identities=26% Similarity=0.392 Sum_probs=30.7
Q ss_pred ceeecceeeCCCCChHHHHHhhHHHHHHHh-----cC----CcccEEeeccCCCCcceec
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVL-----DG----YNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV~PLV~svL-----dG----yNvcIfAYGQTGSGKTyTM 192 (966)
..++|+.|.+ ++++-+++..++..+- .. ....|+-||++|+|||+..
T Consensus 11 ~~~~f~di~G----~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGG----AEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCS----CHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCC----cHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 4567888776 4555555555554432 11 2345999999999999865
No 117
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=53.45 E-value=31 Score=28.86 Aligned_cols=41 Identities=17% Similarity=0.365 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002104 436 RDQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTR 476 (966)
Q Consensus 436 ~~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~ 476 (966)
+..+...+..|+.++..|+.++..|+.+|..|+.++..|..
T Consensus 17 R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 17 RQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567788888888888888888888888887776643
No 118
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=52.90 E-value=6 Score=44.04 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=21.1
Q ss_pred HHHHHhcCCcccEEeeccCCCCccee
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyT 191 (966)
.+..++.|.+..+++.|+||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 45666777667789999999999976
No 119
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=52.88 E-value=5.2 Score=46.04 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=19.8
Q ss_pred HHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 164 EPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 164 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
..++..+..|.+.++++ ++||||||.++.
T Consensus 188 ~~~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 188 NRAVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 33444555576655554 999999999864
No 120
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=52.65 E-value=5.4 Score=41.24 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=18.4
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..+++|.+ ++..++||||||.+.
T Consensus 24 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 24 TIPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 3455667766 567789999999764
No 121
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=52.50 E-value=24 Score=31.81 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHhh
Q 002104 442 SMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLEV 487 (966)
Q Consensus 442 ~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeql~~ 487 (966)
...+|+.++..++.|+..||..++++...++.+.+.-..++.+++.
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~ 66 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDS 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999988877777777653
No 122
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=52.12 E-value=3 Score=43.15 Aligned_cols=41 Identities=29% Similarity=0.395 Sum_probs=25.4
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.|+.+.+ |+++.+.+...+ -.|....++-||++|+|||++.
T Consensus 15 ~~~~~~g----~~~~~~~l~~~l---~~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 15 TLDEVVG----QDEVIQRLKGYV---ERKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SGGGSCS----CHHHHHHHHTTT---TTTCCCCEEEESSSSSSHHHHH
T ss_pred CHHHHhC----CHHHHHHHHHHH---hCCCCCeEEEECcCCcCHHHHH
Confidence 4555543 455544433332 2354445899999999999865
No 123
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=52.07 E-value=5.3 Score=42.77 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=19.2
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 51 AIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 4566677877 677889999999754
No 124
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=51.81 E-value=5.5 Score=40.85 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=17.8
Q ss_pred HHHhcCCcccEEeeccCCCCcceecc
Q 002104 168 KSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 168 ~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
..++++.+ ++.+|+||+|||+...
T Consensus 103 ~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 103 ERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 34566655 6778899999998753
No 125
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=51.46 E-value=7 Score=41.70 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=22.7
Q ss_pred HHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 158 EVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 158 dVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.....+...+..+. ..+..|+-||.+|+|||+..
T Consensus 9 ~~~~~~~~~~~~~a-~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 9 PAMQHLLNEIAMVA-PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp HHHHHHHHHHHHHC-STTSCEEEESCTTSCHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCcEEEECCCCchHHHHH
Confidence 34444444444443 45678999999999998753
No 126
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=51.35 E-value=5.8 Score=42.63 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=19.1
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..++.|.| ++..++||||||.+.
T Consensus 45 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 45 AIPIIKEKRD--LMACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHccCCC--EEEEcCCCCHHHHHH
Confidence 4556678877 467889999999764
No 127
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=51.29 E-value=4.8 Score=45.35 Aligned_cols=47 Identities=21% Similarity=0.348 Sum_probs=29.4
Q ss_pred ceeecceeeCCCCChHHHHHhhHHHHH------HHhcC---CcccEEeeccCCCCcceec
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEVEPVIK------SVLDG---YNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV~PLV~------svLdG---yNvcIfAYGQTGSGKTyTM 192 (966)
....||.|.+ ++++-+.+...|. .++.| ....|+-||++|+|||+..
T Consensus 129 ~~~~~~di~G----~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAG----LEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCS----CHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcC----HHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 3467888776 4555555443332 22233 2356899999999999865
No 128
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=51.11 E-value=4.7 Score=49.18 Aligned_cols=44 Identities=32% Similarity=0.440 Sum_probs=29.4
Q ss_pred eecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceeccc
Q 002104 144 YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 194 (966)
-.||.|++. ++ ++..+++.+..+....++-||++|+|||+.+.+
T Consensus 167 ~~ld~viGr----~~---~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 167 GKLDPVIGR----DE---EIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp TCSCCCCSC----HH---HHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred CCCcccCCc----HH---HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 356766654 32 344455555556666678899999999987753
No 129
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=50.85 E-value=7.1 Score=45.20 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=30.4
Q ss_pred ceeecceeeCCCCChHHHHHhhHHHHHHH-----hcCC----cccEEeeccCCCCcceec
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEVEPVIKSV-----LDGY----NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV~PLV~sv-----LdGy----NvcIfAYGQTGSGKTyTM 192 (966)
..++||.|.+ ++++-..+..++..+ +... ...|+-||++|+|||+.+
T Consensus 26 ~~~~f~dv~G----~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAG----AEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCS----CHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCC----cHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 4577888776 455555555555443 2222 224899999999999865
No 130
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=50.82 E-value=28 Score=29.18 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 002104 436 RDQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRP 477 (966)
Q Consensus 436 ~~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~ 477 (966)
+..+...+..|+.++..|+.++..|+.++..|+..+..|...
T Consensus 17 R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 17 RKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555678888888888888888888888888888776553
No 131
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=50.65 E-value=4.9 Score=42.27 Aligned_cols=20 Identities=40% Similarity=0.512 Sum_probs=16.2
Q ss_pred CcccEEeeccCCCCcceecc
Q 002104 174 YNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 174 yNvcIfAYGQTGSGKTyTM~ 193 (966)
....+.-.|+||||||+++.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHH
Confidence 34567888999999999873
No 132
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=50.56 E-value=2.7 Score=44.29 Aligned_cols=49 Identities=16% Similarity=0.290 Sum_probs=24.1
Q ss_pred eecceeeCCCCChHHHHHhh-HHHH-HHHhcCCc----ccEEeeccCCCCcceec
Q 002104 144 YSFDKVFHPGSSQDEVFSEV-EPVI-KSVLDGYN----ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV-~PLV-~svLdGyN----vcIfAYGQTGSGKTyTM 192 (966)
.+||.|-+.+.-.+++.+.+ .|+- ..++++++ ..|+-||+.|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 45666655433333333332 3332 12333332 22899999999999875
No 133
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=50.47 E-value=4.3 Score=44.22 Aligned_cols=50 Identities=28% Similarity=0.479 Sum_probs=27.5
Q ss_pred eeecceeeCCCCChHHHHHhh-HHHH-HHHhcCC---cccEEeeccCCCCcceec
Q 002104 143 NYSFDKVFHPGSSQDEVFSEV-EPVI-KSVLDGY---NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 143 ~F~FD~VF~p~asQedVF~eV-~PLV-~svLdGy---NvcIfAYGQTGSGKTyTM 192 (966)
...|+.|.+.+..-+.+.+.+ .|+- ..++.+. ...|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 456787776433323333322 2211 1222222 246889999999999765
No 134
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=49.99 E-value=31 Score=33.60 Aligned_cols=40 Identities=13% Similarity=0.225 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH
Q 002104 445 NLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQ 484 (966)
Q Consensus 445 ~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeq 484 (966)
.|.+++..+++|+..++.++..++.+++++.++...++++
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~ 118 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSE 118 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555444444444444444444333
No 135
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=49.51 E-value=38 Score=28.60 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002104 437 DQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTR 476 (966)
Q Consensus 437 ~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~ 476 (966)
..+...+..|+.++..|+.++..|+.+|..|+..+..|..
T Consensus 19 ~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 19 NRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556778888888888888888888888877776643
No 136
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=48.21 E-value=5.9 Score=46.67 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=18.6
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
.|..++..... .+-.|+.|||||+|+.
T Consensus 197 AV~~al~~~~~-~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 197 AVLFALSQKEL-AIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHHCSSE-EEEECCTTSCHHHHHH
T ss_pred HHHHHhcCCCc-eEEECCCCCCHHHHHH
Confidence 45555543333 4567999999999963
No 137
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=47.65 E-value=37 Score=29.99 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHhhh
Q 002104 445 NLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLEVS 488 (966)
Q Consensus 445 ~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeql~~~ 488 (966)
+|+..+.+..+|+......|+.|+..|.+....+..++.++...
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444445555555555555555555555443
No 138
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=47.28 E-value=7.4 Score=42.30 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=18.7
Q ss_pred HHHHHhcCCcccEEeeccCCCCccee
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyT 191 (966)
.+..+++|.| ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 4556678875 67889999999984
No 139
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=46.92 E-value=8 Score=41.77 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=15.1
Q ss_pred cccEEeeccCCCCcceec
Q 002104 175 NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM 192 (966)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457888999999999864
No 140
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=46.68 E-value=3.7 Score=43.56 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=25.2
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
+||.+.+ |+++.+.+...+. -.|.-..++-||++|+|||+++.
T Consensus 12 ~~~~~vg----~~~~~~~l~~~~~--~~~~~~~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 12 SLNALSH----NEELTNFLKSLSD--QPRDLPHLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp SGGGCCS----CHHHHHHHHTTTT--CTTCCCCEEEECSTTSSHHHHHH
T ss_pred CHHHhcC----CHHHHHHHHHHHh--hCCCCCeEEEECCCCCCHHHHHH
Confidence 4666554 5555544333321 12322228889999999999863
No 141
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=45.85 E-value=7.8 Score=41.15 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=19.2
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..++.|.+ ++..++||||||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4566778876 567789999999764
No 142
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=45.43 E-value=10 Score=45.44 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=27.5
Q ss_pred ChHHHHHhhHHHHHHHhcCCc------ccEEeeccCCCCcceec
Q 002104 155 SQDEVFSEVEPVIKSVLDGYN------ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 155 sQedVF~eV~PLV~svLdGyN------vcIfAYGQTGSGKTyTM 192 (966)
.|.++...+...|..+..|.. +.++-||++|+|||++.
T Consensus 495 Gq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 495 GQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp SCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 366776666666666655544 26999999999999864
No 143
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=45.02 E-value=8.1 Score=44.74 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=16.7
Q ss_pred hcCCcccEEeeccCCCCcceecc
Q 002104 171 LDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 171 LdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
-.|.+ |.-.|+||||||+||.
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHHH
Confidence 35665 6778999999999873
No 144
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=44.37 E-value=5.9 Score=41.96 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=15.0
Q ss_pred ccEEeeccCCCCcceecc
Q 002104 176 ACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM~ 193 (966)
..|+-||++|+|||+.+.
T Consensus 47 ~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp CCEEEESCCCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 368889999999998763
No 145
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=44.35 E-value=8.6 Score=43.70 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=20.5
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..++.|.+-.++..++||||||.+.
T Consensus 149 ai~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 149 ALPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp SHHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHHcCCCCCEEEECCCCccHHHHH
Confidence 345667774556788999999999873
No 146
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=44.10 E-value=7.9 Score=41.95 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=15.4
Q ss_pred cccEEeeccCCCCcceec
Q 002104 175 NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM 192 (966)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457999999999999865
No 147
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=43.72 E-value=9.2 Score=42.69 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=19.1
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.|..++.|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 4556678877 567789999999774
No 148
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=43.67 E-value=7.6 Score=44.68 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=16.3
Q ss_pred CCcccEEeeccCCCCcceec
Q 002104 173 GYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 173 GyNvcIfAYGQTGSGKTyTM 192 (966)
.....|+-||++|+|||+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH
Confidence 34567999999999999864
No 149
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=43.56 E-value=5.5 Score=41.34 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=16.2
Q ss_pred HHHhcCCcccEEeeccCCCCcceecc
Q 002104 168 KSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 168 ~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
..++.|.++ +..++||||||.+..
T Consensus 123 ~~~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 123 FEGLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHHHhcCCe--EEEcCCCCCcHHHHH
Confidence 334445444 338999999998763
No 150
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=43.50 E-value=9.4 Score=43.36 Aligned_cols=27 Identities=37% Similarity=0.589 Sum_probs=20.6
Q ss_pred HHHHHHhcCCcccEEeeccCCCCccee
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyT 191 (966)
..|..++.|.+--+++.++||||||.+
T Consensus 101 ~~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 101 KTIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCCCccHH
Confidence 355667765555678899999999986
No 151
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=43.21 E-value=8.1 Score=39.92 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=25.0
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.|+.+.+ |+++.+.+...+ -.|.-..++-||+.|+|||++.
T Consensus 19 ~~~~~~g----~~~~~~~l~~~l---~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 19 VLSDIVG----NKETIDRLQQIA---KDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SGGGCCS----CTHHHHHHHHHH---HSCCCCCEEEECSTTSSHHHHH
T ss_pred CHHHHHC----CHHHHHHHHHHH---HcCCCCeEEEECcCCCCHHHHH
Confidence 3555443 445554443333 3444334899999999999865
No 152
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=43.09 E-value=55 Score=27.73 Aligned_cols=38 Identities=16% Similarity=0.348 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002104 438 QKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALT 475 (966)
Q Consensus 438 ~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~ 475 (966)
.+......|..+.+.|+.++..|+.+|..|+.++..|.
T Consensus 20 KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566777777777777777777777776666554
No 153
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.01 E-value=14 Score=42.67 Aligned_cols=74 Identities=22% Similarity=0.348 Sum_probs=44.6
Q ss_pred eecceeeCCCCChHHHHHhh-HHHHH-HHhc--C--CcccEEeeccCCCCcceecc--------------cC---CCCCC
Q 002104 144 YSFDKVFHPGSSQDEVFSEV-EPVIK-SVLD--G--YNACIFAYGQTGTGKSFTME--------------GT---PDSPG 200 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV-~PLV~-svLd--G--yNvcIfAYGQTGSGKTyTM~--------------G~---~e~pG 200 (966)
.+||-|-+-+.--+++.+.| .|+.. ..+. | .--.|+-||++|+|||++.- |. ....|
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vG 285 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVG 285 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCC
Confidence 45666655433333333333 33331 2333 3 24569999999999997642 11 23468
Q ss_pred cHHHHHHHHHHHHHhcC
Q 002104 201 IVPRAIEAIFKQAMESN 217 (966)
Q Consensus 201 IIPRale~LF~~i~e~~ 217 (966)
--.+.++.+|..+....
T Consensus 286 esek~ir~lF~~Ar~~a 302 (467)
T 4b4t_H 286 EGARMVRELFEMARTKK 302 (467)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 88999999999876543
No 154
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=42.99 E-value=12 Score=44.72 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=24.8
Q ss_pred hHHHHHhhHHHHHHHhcCCc------ccEEeeccCCCCcceec
Q 002104 156 QDEVFSEVEPVIKSVLDGYN------ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 156 QedVF~eV~PLV~svLdGyN------vcIfAYGQTGSGKTyTM 192 (966)
|+++-..+...+.....|.. +.++-||++|+|||++.
T Consensus 463 ~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 463 QDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp CHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHH
Confidence 44554445445555555543 47899999999999765
No 155
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=42.71 E-value=5.8 Score=43.85 Aligned_cols=20 Identities=40% Similarity=0.512 Sum_probs=16.5
Q ss_pred CcccEEeeccCCCCcceecc
Q 002104 174 YNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 174 yNvcIfAYGQTGSGKTyTM~ 193 (966)
....|.-.|+||||||+++.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 44568889999999999873
No 156
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=41.74 E-value=11 Score=45.78 Aligned_cols=37 Identities=30% Similarity=0.437 Sum_probs=26.7
Q ss_pred hHHHHHhhHHHHHHHhcCCc------ccEEeeccCCCCcceec
Q 002104 156 QDEVFSEVEPVIKSVLDGYN------ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 156 QedVF~eV~PLV~svLdGyN------vcIfAYGQTGSGKTyTM 192 (966)
|..+...+...|..+..|.. +.|+-||++|+|||++.
T Consensus 563 ~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 563 QDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 605 (854)
T ss_dssp CHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHH
T ss_pred cHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 56666666666666655532 58999999999998764
No 157
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=41.49 E-value=12 Score=41.53 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=19.6
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.|..++.|.+ +++.++||||||...
T Consensus 86 ai~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 86 SIPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCCchHHH
Confidence 4566778877 577889999999864
No 158
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=41.38 E-value=11 Score=42.02 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=18.6
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..++.|.| ++..++||||||.+.
T Consensus 12 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 12 LALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCChHHHHH
Confidence 3455678876 567789999999763
No 159
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=41.35 E-value=11 Score=42.81 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=27.5
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceeccc
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 194 (966)
.||.|.+. ++... .++..+-.+....++-||++|+|||+...+
T Consensus 178 ~ld~iiGr----~~~i~---~l~~~l~r~~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 178 SLDPVIGR----SKEIQ---RVIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp CSCCCCCC----HHHHH---HHHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCccCc----HHHHH---HHHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 46666653 33333 344444445556678899999999987643
No 160
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=41.01 E-value=10 Score=42.54 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=24.4
Q ss_pred CCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 153 GSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 153 ~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
+..|.+++..+... +-.| ...++..|..|||||+++
T Consensus 27 n~~Q~~av~~~~~~---i~~~-~~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIVMKA---IKEK-KHHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHHHHH---HHSS-SCEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHHHHH---HhcC-CCEEEEEeCCCCCHHHHH
Confidence 44677776654322 2233 348899999999999876
No 161
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=40.98 E-value=7.3 Score=44.61 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=28.7
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHh----cC----------CcccEEeeccCCCCcceec
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVL----DG----------YNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svL----dG----------yNvcIfAYGQTGSGKTyTM 192 (966)
+|+.+.+ ++.+.+.+...+.... .| ....++-||++|+|||++.
T Consensus 37 ~~~dliG----~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 37 NLQQVCG----NKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHH
T ss_pred CHHHhcC----CHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHH
Confidence 4666665 4556655555554432 11 2357899999999999876
No 162
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=40.74 E-value=6.4 Score=41.76 Aligned_cols=25 Identities=36% Similarity=0.642 Sum_probs=19.1
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4566677876 567789999999873
No 163
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=40.47 E-value=9.7 Score=44.77 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=18.2
Q ss_pred HHHhcCCcccEEeeccCCCCcceecc
Q 002104 168 KSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 168 ~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
..++. +..++..|++|||||+|+.
T Consensus 159 ~~~l~--~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 159 AVALT--RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp HHHHT--BSEEEEECCTTSTHHHHHH
T ss_pred HHHhc--CCCEEEEeCCCCCHHHHHH
Confidence 34454 3567899999999999874
No 164
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=39.81 E-value=10 Score=39.59 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=18.1
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..++.|.. .++..++||||||.+.
T Consensus 36 ~i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 36 VIPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHHhCCCC-CEEEECCCCChHHHHH
Confidence 3455566632 3567899999999874
No 165
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=39.40 E-value=11 Score=37.36 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=21.1
Q ss_pred HHHHHHhcC-C--cccEEeeccCCCCcceecc
Q 002104 165 PVIKSVLDG-Y--NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 165 PLV~svLdG-y--NvcIfAYGQTGSGKTyTM~ 193 (966)
+-++.++.| . ...+.-+|++|+|||+.+.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 456777754 3 3467889999999998763
No 166
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=39.23 E-value=10 Score=43.82 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=18.3
Q ss_pred hcCCcccEEeeccCCCCcceecc
Q 002104 171 LDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 171 LdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
+.-.++.++..|..|||||+|+.
T Consensus 18 v~~~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 18 VAAPRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp HTCCSSCEEEEECTTSCHHHHHH
T ss_pred HhCCCCCEEEEECCCCCHHHHHH
Confidence 33446778899999999999974
No 167
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=38.81 E-value=43 Score=28.49 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002104 437 DQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKL 471 (966)
Q Consensus 437 ~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~L 471 (966)
..+...+..|+.++..|+.++..|+.+++.|+..+
T Consensus 26 ~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 26 ARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566667777777777776666666666554
No 168
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=38.54 E-value=16 Score=42.83 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=19.9
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
+|..++.|.+ +++.++||+|||.+.
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHHH
Confidence 4566788887 678889999999753
No 169
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=37.39 E-value=12 Score=41.44 Aligned_cols=23 Identities=22% Similarity=0.105 Sum_probs=17.1
Q ss_pred HHHhcCCcccEEeeccCCCCcceec
Q 002104 168 KSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 168 ~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
..++.|.+ ++..|+||+|||.+.
T Consensus 103 ~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 103 ERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHhcCC--EEEEeCCCCCHHHHH
Confidence 44556654 677789999999875
No 170
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=37.34 E-value=12 Score=43.50 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=19.4
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
+|..+++|.| ++..++||||||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 4556677876 677899999999865
No 171
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=36.30 E-value=19 Score=42.87 Aligned_cols=46 Identities=26% Similarity=0.471 Sum_probs=32.2
Q ss_pred eecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceeccc
Q 002104 144 YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 194 (966)
|.+.. |.|...|..-+.. ++..+-.|... ....|.||||||+||..
T Consensus 2 ~~~~~-~~~~~~q~~ai~~---l~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 2 FRYRG-PSPKGDQPKAIAG---LVEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCCS-CCCCTTHHHHHHH---HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCC-CCCCCCChHHHHH---HHHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 45554 4888889877655 45555566532 45679999999999963
No 172
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=36.17 E-value=21 Score=38.97 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=14.5
Q ss_pred ccEEeeccCCCCcceec
Q 002104 176 ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM 192 (966)
..|.-.|++|||||+|+
T Consensus 130 ~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46677899999999887
No 173
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=36.13 E-value=13 Score=43.77 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=18.7
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
.|..++. +..++..|++|||||+|+.
T Consensus 188 av~~~l~--~~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 188 AVKTVLQ--RPLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp HHHHHHT--CSEEEEECCTTSCHHHHHH
T ss_pred HHHHHhc--CCCeEEECCCCCCHHHHHH
Confidence 4445553 3356789999999999875
No 174
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=35.61 E-value=20 Score=38.48 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=14.2
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.|.-.|++|||||+|+
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5677899999999987
No 175
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=35.30 E-value=51 Score=30.76 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002104 442 SMKNLQQKMKKIEEERLRVRGEIENLSEKLEAL 474 (966)
Q Consensus 442 ~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l 474 (966)
.+..+.+++..|+.|+.+|+++++.|+.+|+..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999999999999998873
No 176
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=35.08 E-value=13 Score=36.34 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=19.0
Q ss_pred HHHHHhc-CC--cccEEeeccCCCCcceecc
Q 002104 166 VIKSVLD-GY--NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 166 LV~svLd-Gy--NvcIfAYGQTGSGKTyTM~ 193 (966)
.++.++. |. ...+.-+|++|||||+.+.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHH
Confidence 4556664 33 2356678999999998763
No 177
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=35.05 E-value=36 Score=29.73 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002104 438 QKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEAL 474 (966)
Q Consensus 438 ~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l 474 (966)
.++..+++|+.++..|+.+...+..+++.|+..+..|
T Consensus 26 RK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566666666666655555555555555544444
No 178
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=34.95 E-value=15 Score=35.90 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=21.4
Q ss_pred HHHHHHhc-CCc--ccEEeeccCCCCcceecc
Q 002104 165 PVIKSVLD-GYN--ACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 165 PLV~svLd-GyN--vcIfAYGQTGSGKTyTM~ 193 (966)
+-++.++. |.. ..+.-+|.+|+|||..+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 45667775 553 467889999999998753
No 179
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=34.84 E-value=15 Score=42.18 Aligned_cols=27 Identities=37% Similarity=0.589 Sum_probs=20.0
Q ss_pred HHHHHHhcCCcccEEeeccCCCCccee
Q 002104 165 PVIKSVLDGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 165 PLV~svLdGyNvcIfAYGQTGSGKTyT 191 (966)
.+|..++.|-+--+++.++||||||.+
T Consensus 50 ~~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 50 KTIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 355667755445578889999999986
No 180
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=34.81 E-value=14 Score=39.56 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=18.5
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
.+..++.| .++..++||+|||.+..
T Consensus 17 ~i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 17 IYAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 44566777 45667899999998763
No 181
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=34.78 E-value=26 Score=35.92 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=20.3
Q ss_pred hHHHHHHHhcCCc-----ccEEeeccCCCCccee
Q 002104 163 VEPVIKSVLDGYN-----ACIFAYGQTGTGKSFT 191 (966)
Q Consensus 163 V~PLV~svLdGyN-----vcIfAYGQTGSGKTyT 191 (966)
...++..++.|+. ..|+-.|++|||||+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 15 LARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTI 48 (253)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHH
T ss_pred HHHHHHHHHccCCcccCCeEEEEECCCCCCHHHH
Confidence 3445556665543 3588999999999874
No 182
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=34.70 E-value=69 Score=28.09 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002104 441 VSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALT 475 (966)
Q Consensus 441 ~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~ 475 (966)
..+..|+++...++.++..++.+++.|+.+|.++.
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34677888888888888888888888888887654
No 183
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=34.55 E-value=11 Score=34.90 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=12.8
Q ss_pred cEEeeccCCCCccee
Q 002104 177 CIFAYGQTGTGKSFT 191 (966)
Q Consensus 177 cIfAYGQTGSGKTyT 191 (966)
.|+-.|.+|||||+.
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477899999999874
No 184
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=34.28 E-value=35 Score=28.29 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002104 437 DQKEVSMKNLQQKMKKIEEERLRVRGEIENLSE 469 (966)
Q Consensus 437 ~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~ 469 (966)
..+...+..|+.++..|+.|+..|+.++..|+.
T Consensus 18 ~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 18 RKKKEYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666666666666666666666665554
No 185
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=34.19 E-value=18 Score=42.22 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=18.2
Q ss_pred HHHHHhcCCcccEEeeccCCCCccee
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyT 191 (966)
+|..++.|.| ++..++||||||..
T Consensus 21 ~i~~~l~g~~--~iv~~~TGsGKTl~ 44 (696)
T 2ykg_A 21 LALPAMKGKN--TIICAPTGCGKTFV 44 (696)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCchHHHH
Confidence 3455667877 56788999999985
No 186
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=33.25 E-value=11 Score=42.42 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=19.6
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
+|..++.|.+. +++.|+||||||...
T Consensus 11 ~i~~~l~~~~~-~lv~a~TGsGKT~~~ 36 (451)
T 2jlq_A 11 VDEDIFRKKRL-TIMDLHPGAGKTKRI 36 (451)
T ss_dssp CCGGGGSTTCE-EEECCCTTSSCCTTH
T ss_pred HHHHHHhcCCe-EEEECCCCCCHhhHH
Confidence 34567788764 567799999999863
No 187
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=33.15 E-value=71 Score=25.52 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002104 445 NLQQKMKKIEEERLRVRGEIENLSEKLEALTR 476 (966)
Q Consensus 445 ~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~ 476 (966)
+|-++|..+..|+...+++|.+|+.++.+|..
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888888888888888887654
No 188
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=32.61 E-value=16 Score=43.68 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=27.6
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
.||.|.+ +++. +..+++.+.......++-||++|+|||+.+.
T Consensus 184 ~~d~~iG----r~~~---i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 184 GIDPLIG----REKE---LERAIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp CSCCCCS----CHHH---HHHHHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred CCCCccC----CHHH---HHHHHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 4666665 3333 3344444445556668889999999998765
No 189
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=32.46 E-value=11 Score=36.49 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=14.1
Q ss_pred cEEeeccCCCCcceecc
Q 002104 177 CIFAYGQTGTGKSFTME 193 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM~ 193 (966)
.+.-.|++|||||+.+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46678999999998874
No 190
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.14 E-value=57 Score=26.98 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002104 443 MKNLQQKMKKIEEERLRVRGEIENLSEKLE 472 (966)
Q Consensus 443 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le 472 (966)
+..|+.++.+|+.++..|..++++|+.+|+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666666666665554
No 191
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=31.94 E-value=11 Score=41.67 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=15.8
Q ss_pred cccEEeeccCCCCcceec
Q 002104 175 NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM 192 (966)
+.-++..|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 567899999999999876
No 192
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=31.92 E-value=11 Score=41.09 Aligned_cols=19 Identities=37% Similarity=0.520 Sum_probs=14.9
Q ss_pred cccEEeeccCCCCcceecc
Q 002104 175 NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM~ 193 (966)
|..++..|+||||||+++-
T Consensus 35 ~~~~~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAK 53 (392)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHH
Confidence 4446778999999998763
No 193
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=31.76 E-value=16 Score=37.05 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=17.1
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
+++.+-.|--+ .-.|+.|||||+.+
T Consensus 15 ~l~~i~~Ge~~--~liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTIV--FGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSEE--EEECCTTSSTTHHH
T ss_pred HHHhccCCCEE--EEECCCCCCHHHHH
Confidence 34444455544 44799999999876
No 194
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=31.65 E-value=83 Score=30.61 Aligned_cols=42 Identities=12% Similarity=0.310 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH
Q 002104 443 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQ 484 (966)
Q Consensus 443 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeq 484 (966)
+..+.+++..|..++..++.+++.++.+++.+.++...++.+
T Consensus 84 l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 84 IENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444443
No 195
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=31.24 E-value=19 Score=43.12 Aligned_cols=42 Identities=24% Similarity=0.300 Sum_probs=27.1
Q ss_pred ecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 145 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 145 ~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
.||.|.+ +++... .++..+..+....++-||++|+|||....
T Consensus 178 ~ld~iiG----~~~~i~---~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 178 SLDPVIG----RSKEIQ---RVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp CSCCCCC----CHHHHH---HHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccC----chHHHH---HHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 4666655 344433 34444444565668999999999997654
No 196
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=30.60 E-value=1e+02 Score=23.78 Aligned_cols=31 Identities=16% Similarity=0.389 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002104 443 MKNLQQKMKKIEEERLRVRGEIENLSEKLEA 473 (966)
Q Consensus 443 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~ 473 (966)
|.+|+.++.+|-.+...|..+++.|+..+.+
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 4566677777777777777777777766554
No 197
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=30.50 E-value=19 Score=35.33 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=19.8
Q ss_pred HHHHHHhc-CCc--ccEEeeccCCCCcceec
Q 002104 165 PVIKSVLD-GYN--ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 165 PLV~svLd-GyN--vcIfAYGQTGSGKTyTM 192 (966)
+-++.++. |.. -.+.-+|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 34566664 432 35778899999999876
No 198
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=30.46 E-value=75 Score=28.10 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002104 441 VSMKNLQQKMKKIEEERLRVRGEIENLSEKLEAL 474 (966)
Q Consensus 441 ~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l 474 (966)
..+..|+++...++.|...++.+++.|+.+|++|
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3467778888888888888888888888887643
No 199
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=30.18 E-value=20 Score=35.39 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=19.4
Q ss_pred HHHHHHHhc---CCcccEEeeccCCCCcceec
Q 002104 164 EPVIKSVLD---GYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 164 ~PLV~svLd---GyNvcIfAYGQTGSGKTyTM 192 (966)
..+++.++. .....|.-.|.+|||||+.+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 344555543 23356788899999999765
No 200
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=29.85 E-value=13 Score=36.11 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=12.8
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999865
No 201
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=29.69 E-value=22 Score=42.95 Aligned_cols=35 Identities=20% Similarity=0.448 Sum_probs=25.5
Q ss_pred HHHHhhHHHHHHH-hcCCcccEEeeccCCCCcceec
Q 002104 158 EVFSEVEPVIKSV-LDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 158 dVF~eV~PLV~sv-LdGyNvcIfAYGQTGSGKTyTM 192 (966)
.||.-......++ -++.|-||+.-|.+|||||.+.
T Consensus 76 HifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 76 HMYALANDAYRSMRQSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 3665433333333 3799999999999999999875
No 202
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=29.09 E-value=21 Score=37.13 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=15.1
Q ss_pred ccEEeeccCCCCcceec
Q 002104 176 ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM 192 (966)
..++-||+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 67889999999999865
No 203
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=29.08 E-value=30 Score=38.29 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=14.2
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.|.-.|++|||||+|+
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 5778899999999987
No 204
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=28.92 E-value=17 Score=38.84 Aligned_cols=18 Identities=39% Similarity=0.704 Sum_probs=14.5
Q ss_pred ccEEeeccCCCCcceecc
Q 002104 176 ACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM~ 193 (966)
..|.-.|++|+|||+|+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 356667999999999874
No 205
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=28.78 E-value=19 Score=35.70 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=18.2
Q ss_pred HHHHhcC-C--cccEEeeccCCCCcceec
Q 002104 167 IKSVLDG-Y--NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 167 V~svLdG-y--NvcIfAYGQTGSGKTyTM 192 (966)
++.++.| . ...+.-+|++|+|||..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 4555543 3 346788999999999874
No 206
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=28.54 E-value=15 Score=34.47 Aligned_cols=15 Identities=40% Similarity=0.523 Sum_probs=12.9
Q ss_pred cEEeeccCCCCccee
Q 002104 177 CIFAYGQTGTGKSFT 191 (966)
Q Consensus 177 cIfAYGQTGSGKTyT 191 (966)
.|+-.|..|||||+.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 578899999999873
No 207
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=28.37 E-value=13 Score=39.64 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=16.5
Q ss_pred HHhcCCcccEEeeccCCCCcceec
Q 002104 169 SVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 169 svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+++|++..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367899999999999999999765
No 208
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=28.11 E-value=24 Score=43.14 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=25.5
Q ss_pred HHHHhhHHHHHHHh-cCCcccEEeeccCCCCcceec
Q 002104 158 EVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 158 dVF~eV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 192 (966)
.||.-......+++ ++.|-||+.-|.+|||||.+.
T Consensus 122 HifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 122 HVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehH
Confidence 35654333333333 689999999999999999875
No 209
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=27.98 E-value=25 Score=43.06 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=24.6
Q ss_pred HHHhhHHHHHHH-hcCCcccEEeeccCCCCcceec
Q 002104 159 VFSEVEPVIKSV-LDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 159 VF~eV~PLV~sv-LdGyNvcIfAYGQTGSGKTyTM 192 (966)
||.-......++ -++.|-||+.-|.+|||||.+.
T Consensus 155 ifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 155 IFAISDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHH
Confidence 554333333333 3799999999999999999875
No 210
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=27.91 E-value=20 Score=43.76 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=17.9
Q ss_pred HHHHhcCCcccEEeeccCCCCcceecc
Q 002104 167 IKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 167 V~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
|..++. +..++..|+.|||||+|+.
T Consensus 369 v~~~l~--~~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 369 VSHVLQ--RPLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp HHHHTT--CSEEEEECSTTSSHHHHHH
T ss_pred HHHHhc--CCCEEEECCCCCCHHHHHH
Confidence 444443 2346789999999999875
No 211
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=27.90 E-value=17 Score=36.20 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=13.2
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.|.-.|++|||||.++
T Consensus 10 ~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVR 25 (208)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4666899999999865
No 212
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=27.71 E-value=24 Score=42.99 Aligned_cols=51 Identities=22% Similarity=0.327 Sum_probs=32.5
Q ss_pred ceeecceeeCCCCChHHHHHhh-HHHHH-HHhcC----CcccEEeeccCCCCcceec
Q 002104 142 KNYSFDKVFHPGSSQDEVFSEV-EPVIK-SVLDG----YNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 142 k~F~FD~VF~p~asQedVF~eV-~PLV~-svLdG----yNvcIfAYGQTGSGKTyTM 192 (966)
..+.||.|.+.+..-+.+.+.+ .|+-. .++.. ....|+-||++|||||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 4578888888666555555554 23321 22222 2346899999999999765
No 213
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=27.68 E-value=25 Score=44.69 Aligned_cols=35 Identities=23% Similarity=0.494 Sum_probs=25.4
Q ss_pred HHHHhhHHHHHHHh-cCCcccEEeeccCCCCcceec
Q 002104 158 EVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 158 dVF~eV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 192 (966)
.||.-......+++ ++.|-||+.-|.+|||||.+.
T Consensus 151 Hi~aia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 151 HIYAIADTAYRSMLQDREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEECCCSTTSSTTHHH
T ss_pred cHhhhHHHHHHHHHhcCCCcEEEEecCCCCCccHHH
Confidence 35654333333333 799999999999999999875
No 214
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=27.68 E-value=31 Score=39.31 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=14.6
Q ss_pred ccEEeeccCCCCcceecc
Q 002104 176 ACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM~ 193 (966)
..|+..|.+|+|||+|+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp EEEEECCCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 456667999999999874
No 215
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=27.60 E-value=21 Score=43.53 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=18.5
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
.|..++.+ ..++..|+.|||||+|+.
T Consensus 364 Av~~~l~~--~~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 364 AVKTVLQR--PLSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp HHHHHHTS--SEEEEECCTTSCHHHHHH
T ss_pred HHHHhccC--CeEEEEcCCCCCHHHHHH
Confidence 34444442 346789999999999875
No 216
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.59 E-value=51 Score=27.26 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHH
Q 002104 459 RVRGEIENLSEKLEALTRPAHSFQEQL 485 (966)
Q Consensus 459 ~lr~EIe~Lk~~Le~l~~~~~~~qeql 485 (966)
.|+.|+++|+.+++.|..+...++.++
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 217
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=27.57 E-value=1.2e+02 Score=28.98 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH
Q 002104 447 QQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQ 484 (966)
Q Consensus 447 qqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeq 484 (966)
+.++++|+.|+..|..++++...+++++.+....+...
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 44566777777777777777777777766655544443
No 218
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=27.55 E-value=23 Score=42.54 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=19.4
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.|..++.|.| ++..++||||||.+.
T Consensus 256 ~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 4566678876 567789999999764
No 219
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=27.54 E-value=24 Score=42.97 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=27.6
Q ss_pred CCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 151 HPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 151 ~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.+..-|.+++..+ ....-.|....++..|+||||||...
T Consensus 368 ~lt~~Q~~ai~~I---~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 368 KLTNAQKRAHQEI---RNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp CCCHHHHHHHHHH---HHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred CCCHHHHHHHHHH---HhhccccCCCcEEEEcCCCCCHHHHH
Confidence 4566687776653 33444566667889999999999764
No 220
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=27.45 E-value=15 Score=35.32 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.5
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.|.-.|..|||||+.+
T Consensus 11 ~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777899999999865
No 221
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=27.41 E-value=14 Score=35.73 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=12.9
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.|.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999998765
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=27.39 E-value=31 Score=39.44 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=16.0
Q ss_pred cccEEeeccCCCCcceecc
Q 002104 175 NACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM~ 193 (966)
...|+..|.+|+|||+|..
T Consensus 100 p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHH
Confidence 3567889999999999974
No 223
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=27.27 E-value=23 Score=34.98 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=14.1
Q ss_pred cccEEeeccCCCCcceec
Q 002104 175 NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM 192 (966)
.-.|.-.|++|||||+.+
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345667899999999865
No 224
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=27.26 E-value=16 Score=35.61 Aligned_cols=15 Identities=47% Similarity=0.660 Sum_probs=12.4
Q ss_pred EEeeccCCCCcceec
Q 002104 178 IFAYGQTGTGKSFTM 192 (966)
Q Consensus 178 IfAYGQTGSGKTyTM 192 (966)
|.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999876
No 225
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=27.20 E-value=14 Score=41.77 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.7
Q ss_pred HhcCCcccEEeeccCCCCcceec
Q 002104 170 VLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 170 vLdGyNvcIfAYGQTGSGKTyTM 192 (966)
+++|++..|.-.|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 57899999999999999999865
No 226
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=27.07 E-value=25 Score=40.98 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=14.0
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
+|.-.|.+|||||.++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 5677899999999987
No 227
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=27.00 E-value=15 Score=38.66 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=16.4
Q ss_pred ccEEeeccCCCCcceeccc
Q 002104 176 ACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM~G 194 (966)
..||..|..|+||||+|..
T Consensus 7 l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 5689999999999999853
No 228
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=26.90 E-value=26 Score=44.10 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=25.1
Q ss_pred HHHHhhHHHHHHH-hcCCcccEEeeccCCCCcceec
Q 002104 158 EVFSEVEPVIKSV-LDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 158 dVF~eV~PLV~sv-LdGyNvcIfAYGQTGSGKTyTM 192 (966)
.||.-......++ -++.|-||+.-|.+|||||.+.
T Consensus 154 HifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 154 HIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHH
Confidence 3555433333333 3799999999999999999875
No 229
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=26.89 E-value=17 Score=34.73 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=12.8
Q ss_pred cEEeeccCCCCccee
Q 002104 177 CIFAYGQTGTGKSFT 191 (966)
Q Consensus 177 cIfAYGQTGSGKTyT 191 (966)
.|+-.|.+|||||+.
T Consensus 7 ~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 7 NIYLIGLMGAGKTSV 21 (185)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999873
No 230
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=26.81 E-value=22 Score=41.59 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=18.5
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
.|..++. +..++..|..|||||+|+.
T Consensus 197 Av~~~~~--~~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 197 VLDQLAG--HRLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp HHHHHTT--CSEEEEECCTTSCHHHHHH
T ss_pred HHHHHHh--CCEEEEEcCCCCCHHHHHH
Confidence 3444444 3567779999999999874
No 231
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=26.45 E-value=26 Score=43.27 Aligned_cols=35 Identities=23% Similarity=0.418 Sum_probs=25.2
Q ss_pred HHHHhhHHHHHHHh-cCCcccEEeeccCCCCcceec
Q 002104 158 EVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 158 dVF~eV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 192 (966)
.||.-......+++ ++.|-||+.-|.+|||||.+.
T Consensus 151 HifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 151 HLFSVADNAYQNMVTDRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp CHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhH
Confidence 35554333333333 799999999999999999875
No 232
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=26.32 E-value=27 Score=42.78 Aligned_cols=35 Identities=29% Similarity=0.518 Sum_probs=25.2
Q ss_pred HHHHhhHHHHHHHh-cCCcccEEeeccCCCCcceec
Q 002104 158 EVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 158 dVF~eV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 192 (966)
.||.-......+++ ++.|-||+.-|.+|||||.+.
T Consensus 138 HifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 138 HIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cHhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHH
Confidence 35654333333333 689999999999999999875
No 233
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=26.28 E-value=18 Score=34.28 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=14.0
Q ss_pred ccEEeeccCCCCcceec
Q 002104 176 ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM 192 (966)
..|+-.|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35888999999998754
No 234
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=26.27 E-value=24 Score=36.64 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=16.7
Q ss_pred hcCCcccEEeeccCCCCcceec
Q 002104 171 LDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 171 LdGyNvcIfAYGQTGSGKTyTM 192 (966)
+.. ..++-||+.|+|||..+
T Consensus 28 l~~--~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 28 LRA--PITLVLGLRRTGKSSII 47 (357)
T ss_dssp TCS--SEEEEEESTTSSHHHHH
T ss_pred hcC--CcEEEECCCCCCHHHHH
Confidence 444 58999999999999876
No 235
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=26.24 E-value=18 Score=34.57 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=13.9
Q ss_pred ccEEeeccCCCCcceec
Q 002104 176 ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM 192 (966)
..|+..|.+|||||+..
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 35788999999998743
No 236
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=26.01 E-value=28 Score=43.72 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=25.3
Q ss_pred HHHHhhHHHHHHH-hcCCcccEEeeccCCCCcceec
Q 002104 158 EVFSEVEPVIKSV-LDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 158 dVF~eV~PLV~sv-LdGyNvcIfAYGQTGSGKTyTM 192 (966)
.||.-......++ -++.|-||+.-|.+|||||.+.
T Consensus 128 HifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 128 HVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHH
T ss_pred hHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 3565433333333 3799999999999999999875
No 237
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=25.99 E-value=16 Score=36.17 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=13.5
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.+.-.|++|||||.++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999876
No 238
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=25.83 E-value=25 Score=43.44 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=19.3
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
.|..++.|.| ++..++||||||.+.
T Consensus 256 ai~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCchHHHHH
Confidence 4556678877 567789999999874
No 239
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=25.81 E-value=19 Score=42.37 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=17.0
Q ss_pred CcccEEeeccCCCCcceecc
Q 002104 174 YNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 174 yNvcIfAYGQTGSGKTyTM~ 193 (966)
.++.++..|..|||||+|+.
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHH
Confidence 46678889999999999974
No 240
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=25.79 E-value=15 Score=42.18 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=18.6
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
+|..+++|.+ ++..++||||||.+.
T Consensus 33 ~i~~il~g~d--~lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 33 IIDTVLSGRD--CLVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCcHHHHHH
Confidence 4566678886 456679999999754
No 241
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=25.74 E-value=1e+02 Score=27.15 Aligned_cols=30 Identities=17% Similarity=0.401 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002104 446 LQQKMKKIEEERLRVRGEIENLSEKLEALT 475 (966)
Q Consensus 446 Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~ 475 (966)
+.++++.++.++..|++.+..|+..|+...
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666665555543
No 242
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=25.73 E-value=29 Score=42.57 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=24.8
Q ss_pred HHHhhHHHHHHH-hcCCcccEEeeccCCCCcceec
Q 002104 159 VFSEVEPVIKSV-LDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 159 VF~eV~PLV~sv-LdGyNvcIfAYGQTGSGKTyTM 192 (966)
||.-......++ -++.|-||+.-|.+|||||.+.
T Consensus 154 ifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 154 IFSISDNAYQYMLTDRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred hhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHH
Confidence 555433333333 3799999999999999999875
No 243
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=25.71 E-value=14 Score=36.66 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=14.9
Q ss_pred cEEeeccCCCCcceeccc
Q 002104 177 CIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM~G 194 (966)
.++-||..|+|||+.+.+
T Consensus 5 i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLS 22 (184)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999988753
No 244
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=25.70 E-value=1e+02 Score=23.83 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002104 443 MKNLQQKMKKIEEERLRVRGEIENLSEKLEA 473 (966)
Q Consensus 443 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~ 473 (966)
|.+|..++.+|..+...|..|+..|+.-+.+
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 3456666777777777777777766665543
No 245
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=25.48 E-value=14 Score=38.24 Aligned_cols=19 Identities=21% Similarity=0.109 Sum_probs=15.6
Q ss_pred ccEEeeccCCCCcceeccc
Q 002104 176 ACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM~G 194 (966)
..++-||.+|+|||..+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 4678899999999988754
No 246
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=25.42 E-value=21 Score=39.94 Aligned_cols=35 Identities=20% Similarity=0.124 Sum_probs=22.4
Q ss_pred eCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecc
Q 002104 150 FHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 193 (966)
Q Consensus 150 F~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 193 (966)
|.+..-|.+.+.. ++.|.+ ++..|+||||||.+..
T Consensus 112 ~~l~~~Q~~ai~~-------~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 112 IEPHWYQKDAVFE-------GLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp ECCCHHHHHHHHH-------HHHHSE--EEEECCSTTTHHHHHH
T ss_pred CCCCHHHHHHHHH-------HHhcCC--cEEEeCCCCCHHHHHH
Confidence 3455556555433 344544 5778999999998863
No 247
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=25.05 E-value=1.3e+02 Score=22.81 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002104 443 MKNLQQKMKKIEEERLRVRGEIENLSEK 470 (966)
Q Consensus 443 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~ 470 (966)
|.+|..++.+|-.+...+..|++.|++-
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4556666666666666666666666543
No 248
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=24.99 E-value=33 Score=36.69 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=22.2
Q ss_pred hHHHHHhhHHHHHHHhcCC-cccEEeeccCCCCcceec
Q 002104 156 QDEVFSEVEPVIKSVLDGY-NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 156 QedVF~eV~PLV~svLdGy-NvcIfAYGQTGSGKTyTM 192 (966)
|+++++.+ ...+-.|. .-.++-||+.|+|||.+.
T Consensus 7 ~~~~~~~l---~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 7 LRPDFEKL---VASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp GHHHHHHH---HHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred hHHHHHHH---HHHHHcCCcceeEEEECCCCchHHHHH
Confidence 45555443 33333454 346889999999999875
No 249
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=24.93 E-value=1.5e+02 Score=24.64 Aligned_cols=42 Identities=24% Similarity=0.369 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH
Q 002104 443 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQ 484 (966)
Q Consensus 443 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeq 484 (966)
..+|-+++..|+.|+..||+|++.-...|..|+.+...+.+-
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKev 46 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEV 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHH
Confidence 456667788888899999999888888777776665555443
No 250
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=24.90 E-value=32 Score=43.04 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=18.3
Q ss_pred HHHHHhcCCcccEEeeccCCCCccee
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyT 191 (966)
.|..++.|.+ ++..|+||||||.+
T Consensus 47 aI~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 47 AVYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHHcCCC--EEEEECCCCcHHHH
Confidence 3455677765 68899999999954
No 251
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=24.88 E-value=17 Score=36.08 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=13.7
Q ss_pred cEEeeccCCCCcceecc
Q 002104 177 CIFAYGQTGTGKSFTME 193 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM~ 193 (966)
.+.-.|++|||||+.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 45668999999998763
No 252
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=24.84 E-value=26 Score=41.41 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=23.8
Q ss_pred eCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceec
Q 002104 150 FHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 150 F~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
|.|...|.++-..|...+ .+|. .+++-.+||||||...
T Consensus 2 ~~~R~~Q~~~~~~v~~~l---~~~~--~~~~~apTGtGKT~a~ 39 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSL---QKSY--GVALESPTGSGKTIMA 39 (620)
T ss_dssp ---CHHHHHHHHHHHHHH---HHSS--EEEEECCTTSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH---HcCC--CEEEECCCCCCHHHHH
Confidence 455566776666554333 3564 4688889999999764
No 253
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=24.76 E-value=18 Score=35.03 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=13.1
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999998765
No 254
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=24.62 E-value=74 Score=22.77 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002104 453 IEEERLRVRGEIENLSEKLEAL 474 (966)
Q Consensus 453 LeeE~~~lr~EIe~Lk~~Le~l 474 (966)
|...+.++++||..|+-++..+
T Consensus 5 lkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHh
Confidence 3334445556666665555544
No 255
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=24.54 E-value=30 Score=43.67 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=26.0
Q ss_pred HHHHhhHHHHHHHh-cCCcccEEeeccCCCCcceec
Q 002104 158 EVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 158 dVF~eV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 192 (966)
.||.-.......++ ++.|-||+.-|.+|||||.+.
T Consensus 126 HIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 126 HVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHH
Confidence 46654433344433 799999999999999999875
No 256
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=24.37 E-value=99 Score=25.73 Aligned_cols=39 Identities=8% Similarity=0.102 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH
Q 002104 446 LQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQ 484 (966)
Q Consensus 446 Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeq 484 (966)
-++.+..|+.+...+..+...|..++..|..+...+...
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777777776666555444
No 257
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=24.23 E-value=18 Score=35.66 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=12.6
Q ss_pred EEeeccCCCCcceec
Q 002104 178 IFAYGQTGTGKSFTM 192 (966)
Q Consensus 178 IfAYGQTGSGKTyTM 192 (966)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999876
No 258
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=24.06 E-value=31 Score=43.25 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=18.0
Q ss_pred HHHHHhcCCcccEEeeccCCCCcce
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSF 190 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTy 190 (966)
.+..+++|.| +++.++||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 4566778866 5778999999995
No 259
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=24.04 E-value=18 Score=39.59 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=14.7
Q ss_pred hcCCcccEEeeccCCCCcceec
Q 002104 171 LDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 171 LdGyNvcIfAYGQTGSGKTyTM 192 (966)
-.|.+ +.-.|+||||||+++
T Consensus 173 ~~G~~--i~ivG~sGsGKSTll 192 (361)
T 2gza_A 173 QLERV--IVVAGETGSGKTTLM 192 (361)
T ss_dssp HTTCC--EEEEESSSSCHHHHH
T ss_pred hcCCE--EEEECCCCCCHHHHH
Confidence 35654 444599999999876
No 260
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=23.91 E-value=21 Score=33.83 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=13.4
Q ss_pred ccEEeeccCCCCccee
Q 002104 176 ACIFAYGQTGTGKSFT 191 (966)
Q Consensus 176 vcIfAYGQTGSGKTyT 191 (966)
..|+-.|..|||||+.
T Consensus 4 ~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578899999999874
No 261
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=23.89 E-value=21 Score=38.37 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=13.9
Q ss_pred ccEEeeccCCCCcceec
Q 002104 176 ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM 192 (966)
..|.-.|++|||||+++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35556799999999987
No 262
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=23.69 E-value=19 Score=34.74 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=13.1
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.|.-.|+.|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4566899999999876
No 263
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=23.68 E-value=1.5e+02 Score=22.59 Aligned_cols=29 Identities=17% Similarity=0.396 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002104 443 MKNLQQKMKKIEEERLRVRGEIENLSEKL 471 (966)
Q Consensus 443 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~L 471 (966)
|.+|..++.+|-.+...|+.|++.|+.-|
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45666666666666666777766666543
No 264
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=23.65 E-value=43 Score=39.79 Aligned_cols=48 Identities=25% Similarity=0.522 Sum_probs=35.3
Q ss_pred eeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceeccc
Q 002104 143 NYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 143 ~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 194 (966)
.|..-.=|.|...|..-++. ++..+-.|.. .....|.|||||||||..
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~---l~~~~~~~~~-~~~l~g~~gs~k~~~~a~ 51 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEK---LVKGIQEGKK-HQTLLGATGTGKTFTVSN 51 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHH---HHHHHHTTCS-EEEEEECTTSCHHHHHHH
T ss_pred cceeecCCCCCCCCHHHHHH---HHHHHhcCCC-cEEEECcCCcHHHHHHHH
Confidence 46667778999999887665 4555556643 245579999999999964
No 265
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=23.63 E-value=19 Score=39.10 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=14.8
Q ss_pred cCCcccEEeeccCCCCcceec
Q 002104 172 DGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 172 dGyNvcIfAYGQTGSGKTyTM 192 (966)
.|. .+.-.|+||||||+++
T Consensus 170 ~g~--~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGK--NVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTC--CEEEEESTTSCHHHHH
T ss_pred CCC--EEEEECCCCCCHHHHH
Confidence 455 4566799999999876
No 266
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=23.57 E-value=22 Score=35.62 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=9.0
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.|.-.|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999876
No 267
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=23.49 E-value=19 Score=38.04 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=14.8
Q ss_pred cccEEeeccCCCCcceec
Q 002104 175 NACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 175 NvcIfAYGQTGSGKTyTM 192 (966)
+-+|...|++|+|||..|
T Consensus 2 ~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEEEESSSSSHHHHH
T ss_pred eeEEEEECCCCCCHHHHH
Confidence 456778899999999765
No 268
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=23.48 E-value=79 Score=24.07 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002104 443 MKNLQQKMKKIEEERLRVRGEIENLSEK 470 (966)
Q Consensus 443 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~ 470 (966)
|.+|..++.+|-.++..|+.|++.|+.-
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456667777777777777777666643
No 269
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=23.47 E-value=30 Score=39.95 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=18.0
Q ss_pred HHHHHhcCCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLdGyNvcIfAYGQTGSGKTyTM 192 (966)
++..++.|. -|+-||++|+|||+..
T Consensus 34 l~~al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 34 CLLAALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHHHHhcCC--eeEeecCchHHHHHHH
Confidence 334444554 5788999999999875
No 270
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=23.46 E-value=24 Score=39.27 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=13.6
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
-++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4688999999999874
No 271
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=23.02 E-value=1.4e+02 Score=22.09 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002104 445 NLQQKMKKIEEERLRVRGEIENLS 468 (966)
Q Consensus 445 ~Lqqkik~LeeE~~~lr~EIe~Lk 468 (966)
.|++++..|.+|+..++-||..|+
T Consensus 6 alkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554443
No 272
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=22.84 E-value=38 Score=41.58 Aligned_cols=50 Identities=20% Similarity=0.351 Sum_probs=33.0
Q ss_pred eeecceeeCCCCChHHHHHhh-HHHHH-HHhcCCc----ccEEeeccCCCCcceec
Q 002104 143 NYSFDKVFHPGSSQDEVFSEV-EPVIK-SVLDGYN----ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 143 ~F~FD~VF~p~asQedVF~eV-~PLV~-svLdGyN----vcIfAYGQTGSGKTyTM 192 (966)
...||.|-+-+..-+++.+.| -|+-. .++.++. ..|+-||+.|+|||...
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 456888877666555565544 34442 3445543 36999999999998654
No 273
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=22.80 E-value=23 Score=33.28 Aligned_cols=16 Identities=44% Similarity=0.534 Sum_probs=13.4
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.|.-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999998753
No 274
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=22.66 E-value=1.4e+02 Score=26.89 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002104 447 QQKMKKIEEERLRVRGEIEN 466 (966)
Q Consensus 447 qqkik~LeeE~~~lr~EIe~ 466 (966)
+.++.+|++++..+..+.++
T Consensus 26 qmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333333333
No 275
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=22.56 E-value=21 Score=34.02 Aligned_cols=16 Identities=31% Similarity=0.297 Sum_probs=13.6
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5678899999999765
No 276
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=22.46 E-value=24 Score=34.62 Aligned_cols=16 Identities=38% Similarity=0.449 Sum_probs=13.5
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.|+-.|.+|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788999999998754
No 277
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.39 E-value=1.8e+02 Score=25.99 Aligned_cols=36 Identities=28% Similarity=0.284 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002104 441 VSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTR 476 (966)
Q Consensus 441 ~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~ 476 (966)
..+..|+.+...++.+...++.+.+.|+.+|++|..
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346777777778888888888888888888887753
No 278
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=22.23 E-value=2.9e+02 Score=26.40 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhhhccc
Q 002104 409 LCETICSLNFATRVKSVHL 427 (966)
Q Consensus 409 ~eETLsTLrFAsRaK~I~l 427 (966)
-.+.+..|++...++...+
T Consensus 42 ~~~dl~~l~~I~~lr~~G~ 60 (142)
T 3gp4_A 42 GAEDLRWILFTRQMRRAGL 60 (142)
T ss_dssp CHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHcCC
Confidence 3667888888888776544
No 279
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=22.06 E-value=24 Score=32.85 Aligned_cols=16 Identities=25% Similarity=0.019 Sum_probs=13.0
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999998753
No 280
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=21.88 E-value=1.2e+02 Score=25.55 Aligned_cols=38 Identities=13% Similarity=0.257 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHH
Q 002104 446 LQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQE 483 (966)
Q Consensus 446 Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qe 483 (966)
-.+....|+.+...|..+...|+.++..|..+...+..
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777777777666655544
No 281
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=21.76 E-value=24 Score=36.46 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=12.1
Q ss_pred cEEeeccCCCCcce
Q 002104 177 CIFAYGQTGTGKSF 190 (966)
Q Consensus 177 cIfAYGQTGSGKTy 190 (966)
.|+-.|.+|||||.
T Consensus 3 li~I~G~~GSGKST 16 (253)
T 2ze6_A 3 LHLIYGPTCSGKTD 16 (253)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCcCHHH
Confidence 46789999999986
No 282
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=21.53 E-value=22 Score=35.16 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=12.7
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
++.-.|++|||||.++
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455699999999876
No 283
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=21.41 E-value=27 Score=39.26 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=13.2
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
-++..|+||||||...
T Consensus 23 ~vlv~a~TGsGKT~~~ 38 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKI 38 (459)
T ss_dssp EEEECCCTTSCTTTTH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4577899999999873
No 284
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=21.40 E-value=28 Score=33.47 Aligned_cols=20 Identities=30% Similarity=0.240 Sum_probs=15.2
Q ss_pred cCCcccEEeeccCCCCccee
Q 002104 172 DGYNACIFAYGQTGTGKSFT 191 (966)
Q Consensus 172 dGyNvcIfAYGQTGSGKTyT 191 (966)
.+....|.-.|.+|||||+.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTV 24 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHH
T ss_pred ccCceEEEEECCCCCCHHHH
Confidence 34455688899999999864
No 285
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=21.36 E-value=1.3e+02 Score=25.35 Aligned_cols=42 Identities=12% Similarity=0.191 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q 002104 444 KNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQL 485 (966)
Q Consensus 444 ~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~~qeql 485 (966)
..-++.+..|+.+...|..+...|+..+..|..+...+...+
T Consensus 19 ~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 19 NRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777777777777777777777666655554443
No 286
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=21.18 E-value=19 Score=36.26 Aligned_cols=18 Identities=22% Similarity=0.111 Sum_probs=14.9
Q ss_pred cEEeeccCCCCcceeccc
Q 002104 177 CIFAYGQTGTGKSFTMEG 194 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM~G 194 (966)
.++-||..|||||..+.+
T Consensus 10 i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 567899999999987654
No 287
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=21.17 E-value=25 Score=33.50 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=14.0
Q ss_pred ccEEeeccCCCCcceec
Q 002104 176 ACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 176 vcIfAYGQTGSGKTyTM 192 (966)
..|+-.|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35888999999998753
No 288
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=21.08 E-value=31 Score=32.67 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=21.1
Q ss_pred HHHHHhhHHHHHHHhc---CCcccEEeeccCCCCcceec
Q 002104 157 DEVFSEVEPVIKSVLD---GYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 157 edVF~eV~PLV~svLd---GyNvcIfAYGQTGSGKTyTM 192 (966)
..+.+.+..++...-. .....|+..|.+|+|||..+
T Consensus 27 ~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 27 SQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp HHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHH
Confidence 4455545444443322 34457899999999998654
No 289
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=21.06 E-value=27 Score=39.04 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=16.0
Q ss_pred HhcCCcccEEeeccCCCCcceec
Q 002104 170 VLDGYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 170 vLdGyNvcIfAYGQTGSGKTyTM 192 (966)
++.|.| ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 345655 578899999999874
No 290
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=21.03 E-value=26 Score=33.26 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=12.9
Q ss_pred cEEeeccCCCCccee
Q 002104 177 CIFAYGQTGTGKSFT 191 (966)
Q Consensus 177 cIfAYGQTGSGKTyT 191 (966)
.|+-.|..|||||+.
T Consensus 5 ~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQ 19 (196)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999874
No 291
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=20.88 E-value=23 Score=35.62 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=12.7
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.+.-.|++|||||..+
T Consensus 25 ~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLI 40 (218)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455799999999876
No 292
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=20.82 E-value=1.8e+02 Score=22.23 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002104 443 MKNLQQKMKKIEEERLRVRGEIENLSEKL 471 (966)
Q Consensus 443 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~L 471 (966)
|.+|..++.+|-.+...|+.|++.|+.-|
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45566666666666666666666665543
No 293
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=20.78 E-value=29 Score=32.43 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=19.6
Q ss_pred HHHHHhc-CCcccEEeeccCCCCcceec
Q 002104 166 VIKSVLD-GYNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 166 LV~svLd-GyNvcIfAYGQTGSGKTyTM 192 (966)
++..++. ....-|...|.+|+|||..+
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 3444444 45667899999999999765
No 294
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=20.77 E-value=24 Score=35.31 Aligned_cols=16 Identities=31% Similarity=0.607 Sum_probs=13.6
Q ss_pred cEEeeccCCCCcceec
Q 002104 177 CIFAYGQTGTGKSFTM 192 (966)
Q Consensus 177 cIfAYGQTGSGKTyTM 192 (966)
.+.-.|+.|+|||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 4667899999999887
No 295
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=20.58 E-value=51 Score=35.15 Aligned_cols=19 Identities=47% Similarity=0.667 Sum_probs=14.5
Q ss_pred CcccEEeeccCCCCcceec
Q 002104 174 YNACIFAYGQTGTGKSFTM 192 (966)
Q Consensus 174 yNvcIfAYGQTGSGKTyTM 192 (966)
....|.-.|.+|||||+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp SCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3445677899999999864
No 296
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=20.57 E-value=1.2e+02 Score=22.35 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002104 450 MKKIEEERLRVRGEIENLSEKLEAL 474 (966)
Q Consensus 450 ik~LeeE~~~lr~EIe~Lk~~Le~l 474 (966)
+..|..|+..++.||..|+-++..+
T Consensus 4 iaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655554
No 297
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=20.46 E-value=1.9e+02 Score=22.20 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002104 443 MKNLQQKMKKIEEERLRVRGEIENLSEK 470 (966)
Q Consensus 443 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~ 470 (966)
|.+|..++.+|-.+...|+.|++.|+.-
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4456666666666666666666666543
No 298
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.40 E-value=2.2e+02 Score=25.17 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002104 444 KNLQQKMKKIEEERLRVRGEIENLSEKLEALTR 476 (966)
Q Consensus 444 ~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~ 476 (966)
...+..++.++.++.....+|.+|+.+|..+..
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455666667777777777777777766543
No 299
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=20.17 E-value=27 Score=41.95 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=15.6
Q ss_pred HHhcCCcccEEeeccCCCCcce
Q 002104 169 SVLDGYNACIFAYGQTGTGKSF 190 (966)
Q Consensus 169 svLdGyNvcIfAYGQTGSGKTy 190 (966)
..++|. .|+..|+||||||+
T Consensus 151 r~l~rk--~vlv~apTGSGKT~ 170 (677)
T 3rc3_A 151 RAMQRK--IIFHSGPTNSGKTY 170 (677)
T ss_dssp HTSCCE--EEEEECCTTSSHHH
T ss_pred HhcCCC--EEEEEcCCCCCHHH
Confidence 345664 46889999999998
No 300
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=20.09 E-value=2.4e+02 Score=23.30 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002104 443 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALT 475 (966)
Q Consensus 443 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~ 475 (966)
...|..+..+|.+.+...+.+|..|++.++.+.
T Consensus 18 l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 18 IDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555666677777788888888888887763
Done!