BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002105
(966 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 182/555 (32%), Positives = 269/555 (48%), Gaps = 80/555 (14%)
Query: 123 TGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSL 182
+G V + LE LD+S+N S IP +G S L+ LD+ GN L G+ +IS T L
Sbjct: 188 SGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTEL 246
Query: 183 QIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYNNLT 241
++ ++SNQ +G IP L++L+++ L N +GEIP + G +L LDL N+
Sbjct: 247 KLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 304
Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIP-KSILGLKSLVSFDLSDNYLSGEIPEEVIQL- 299
G +PP FG+ S L L L N +G +P ++L ++ L DLS N SGE+PE + L
Sbjct: 305 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 364
Query: 300 ----------------------QN----LEILHLFSNNFTGKIPSSLASMPKLQVLQLWS 333
QN L+ L+L +N FTGKIP +L++ +L L L
Sbjct: 365 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 334 NQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLS 393
N SG IPS+LG + L + L N L G+IP+ L +L LIL N L G+IP+ LS
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 484
Query: 394 TCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAG 453
C +L + L NNRL+GE+ RL + L +S N SG I + + SL L+L
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 544
Query: 454 NNFSGKLPDSF-----------------------------------------GSDQLENL 472
N F+G +P + S+QL L
Sbjct: 545 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 604
Query: 473 ------DLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQ 526
+++ + G +F +M L +S N L G IP+E+ S L L+L +N
Sbjct: 605 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 664
Query: 527 LSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFL 586
+SG IP + ++ L LDLS N+L G+IPQ + + L ++++S+N+ G +P G F
Sbjct: 665 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 724
Query: 587 AINATAVAGN-DLCG 600
N LCG
Sbjct: 725 TFPPAKFLNNPGLCG 739
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 181/556 (32%), Positives = 275/556 (49%), Gaps = 52/556 (9%)
Query: 22 ELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISS-- 79
E+ L+SFK + D N L +W S+ C ++G++C++ V +I+LS+K ++ S+
Sbjct: 10 EIHQLISFKDVLPD-KNLLPDWSSNKNPCTFDGVTCRDD-KVTSIDLSSKPLNVGFSAVS 67
Query: 80 --------------SIFHL----------PHVESINLSSNQLSGEIPSDIXXXXXXXXXX 115
S H+ + S++LS N LSG + +
Sbjct: 68 SSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 127
Query: 116 XXXXXXX---TGPVPIG-SLSRLEILDLSNNMLSGK------IPEEIGSFSGLKVLDLGG 165
G V G L+ LE+LDLS N +SG + + G LK L + G
Sbjct: 128 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE---LKHLAISG 184
Query: 166 NVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIG 225
N + G++ +S +L+ ++SN IP +G L+ + + N LSG+ + I
Sbjct: 185 NKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS 241
Query: 226 DLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILG-LKSLVSFDLS 284
T L L++ N G IPP L +L+YL L +NK TG IP + G +L DLS
Sbjct: 242 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 299
Query: 285 DNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIP-SSLASMPKLQVLQLWSNQFSGEIPSN 343
N+ G +P LE L L SNNF+G++P +L M L+VL L N+FSGE+P +
Sbjct: 300 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 359
Query: 344 LGK-QNNLTVIDLSTNFLTGKIPETLCDS--GSLFKLILFSNSLEGKIPNSLSTCKSLRR 400
L +L +DLS+N +G I LC + +L +L L +N GKIP +LS C L
Sbjct: 360 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 419
Query: 401 VRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKL 460
+ L N LSG + S L + L + N L G I ++ + +L+ L L N+ +G++
Sbjct: 420 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 479
Query: 461 PDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVS 519
P + L + LS NR +G IP+ GRL L LK+S N G+IP EL C+ L+
Sbjct: 480 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 539
Query: 520 LDLSNNQLSGHIPASL 535
LDL+ N +G IPA++
Sbjct: 540 LDLNTNLFNGTIPAAM 555
Score = 191 bits (485), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 167/512 (32%), Positives = 240/512 (46%), Gaps = 63/512 (12%)
Query: 66 IELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIXXXXXXXXXXXXXXXXXTGP 125
+++S +SG S +I ++ +N+SSNQ G IP TG
Sbjct: 225 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---LPLKSLQYLSLAENKFTGE 281
Query: 126 VP---IGSLSRLEILDLSNNMLSGKIPEEIG-------------SFSG------------ 157
+P G+ L LDLS N G +P G +FSG
Sbjct: 282 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 341
Query: 158 LKVLDLGGNVLVGEIPLSISNIT-SLQIFTLASNQLIGSIPREIGQ--LRNLKWIYLGYN 214
LKVLDL N GE+P S++N++ SL L+SN G I + Q L+ +YL N
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 215 NLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILG 274
+G+IP + + + L L L +N L+G IP S G+LS LR L L+ N L G IP+ ++
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 275 LKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSN 334
+K+L + L N L+GEIP + NL + L +N TG+IP + + L +L+L +N
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 335 QFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLST 394
FSG IP+ LG +L +DL+TN G IP ++FK GKI +
Sbjct: 522 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIP------AAMFK-------QSGKIAANFIA 568
Query: 395 CKSLRRVRLQNNRLSGEL-------------SSEFTRLPLVYFLDISGNDLSGRIGEQKW 441
K R V ++N+ + E S + RL +I+ G
Sbjct: 569 GK--RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 626
Query: 442 EMTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISR 500
S+ L+++ N SG +P GS L L+L N SG+IP G L L L +S
Sbjct: 627 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 686
Query: 501 NKLFGDIPEELSSCKKLVSLDLSNNQLSGHIP 532
NKL G IP+ +S+ L +DLSNN LSG IP
Sbjct: 687 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 134/398 (33%), Positives = 187/398 (46%), Gaps = 23/398 (5%)
Query: 228 TSLNHLDLVYNNLTGQIPP--SFGNLSNLRYLFLYQNKLTGSIPKSILG---LKSLVSFD 282
SL LDL N+L+G + S G+ S L++L + N L P + G L SL D
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLD 154
Query: 283 LSDNYLSG-EIPEEVIQLQNLEILHLF--SNNFTGKIPSSLASMPKLQVLQLWSNQFSGE 339
LS N +SG + V+ E+ HL N +G + ++ L+ L + SN FS
Sbjct: 155 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTG 212
Query: 340 IPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLR 399
IP LG + L +D+S N L+G + L L + SN G IP KSL+
Sbjct: 213 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 269
Query: 400 RVRLQNNRLSGELSSEFT-RLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSG 458
+ L N+ +GE+ + + LD+SGN G + + L+ L L+ NNFSG
Sbjct: 270 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 329
Query: 459 KLPDS--FGSDQLENLDLSENRFSGTIPRSFGRLS-ELMQLKISRNKLFGDIPEELSSCK 515
+LP L+ LDLS N FSG +P S LS L+ L +S N G I L
Sbjct: 330 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 389
Query: 516 K--LVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHN 573
K L L L NN +G IP +LS L L LS N LSG IP +LG ++ L + + N
Sbjct: 390 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 449
Query: 574 HFHGSLPSTGAFLAINATAVAG-NDLCGGDSTSGLPPC 610
G +P ++ T + NDL G+ SGL C
Sbjct: 450 MLEGEIPQELMYVKTLETLILDFNDLT-GEIPSGLSNC 486
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 224 bits (572), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 182/555 (32%), Positives = 269/555 (48%), Gaps = 80/555 (14%)
Query: 123 TGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSL 182
+G V + LE LD+S+N S IP +G S L+ LD+ GN L G+ +IS T L
Sbjct: 191 SGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTEL 249
Query: 183 QIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYNNLT 241
++ ++SNQ +G IP L++L+++ L N +GEIP + G +L LDL N+
Sbjct: 250 KLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307
Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIP-KSILGLKSLVSFDLSDNYLSGEIPEEVIQL- 299
G +PP FG+ S L L L N +G +P ++L ++ L DLS N SGE+PE + L
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367
Query: 300 ----------------------QN----LEILHLFSNNFTGKIPSSLASMPKLQVLQLWS 333
QN L+ L+L +N FTGKIP +L++ +L L L
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 334 NQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLS 393
N SG IPS+LG + L + L N L G+IP+ L +L LIL N L G+IP+ LS
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 394 TCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAG 453
C +L + L NNRL+GE+ RL + L +S N SG I + + SL L+L
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547
Query: 454 NNFSGKLPDSF-----------------------------------------GSDQLENL 472
N F+G +P + S+QL L
Sbjct: 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607
Query: 473 ------DLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQ 526
+++ + G +F +M L +S N L G IP+E+ S L L+L +N
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667
Query: 527 LSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFL 586
+SG IP + ++ L LDLS N+L G+IPQ + + L ++++S+N+ G +P G F
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727
Query: 587 AINATAVAGN-DLCG 600
N LCG
Sbjct: 728 TFPPAKFLNNPGLCG 742
Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 181/556 (32%), Positives = 275/556 (49%), Gaps = 52/556 (9%)
Query: 22 ELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISS-- 79
E+ L+SFK + D N L +W S+ C ++G++C++ V +I+LS+K ++ S+
Sbjct: 13 EIHQLISFKDVLPD-KNLLPDWSSNKNPCTFDGVTCRDD-KVTSIDLSSKPLNVGFSAVS 70
Query: 80 --------------SIFHL----------PHVESINLSSNQLSGEIPSDIXXXXXXXXXX 115
S H+ + S++LS N LSG + +
Sbjct: 71 SSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 130
Query: 116 XXXXXXX---TGPVPIG-SLSRLEILDLSNNMLSGK------IPEEIGSFSGLKVLDLGG 165
G V G L+ LE+LDLS N +SG + + G LK L + G
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE---LKHLAISG 187
Query: 166 NVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIG 225
N + G++ +S +L+ ++SN IP +G L+ + + N LSG+ + I
Sbjct: 188 NKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS 244
Query: 226 DLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILG-LKSLVSFDLS 284
T L L++ N G IPP L +L+YL L +NK TG IP + G +L DLS
Sbjct: 245 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302
Query: 285 DNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIP-SSLASMPKLQVLQLWSNQFSGEIPSN 343
N+ G +P LE L L SNNF+G++P +L M L+VL L N+FSGE+P +
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362
Query: 344 LGK-QNNLTVIDLSTNFLTGKIPETLCDS--GSLFKLILFSNSLEGKIPNSLSTCKSLRR 400
L +L +DLS+N +G I LC + +L +L L +N GKIP +LS C L
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422
Query: 401 VRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKL 460
+ L N LSG + S L + L + N L G I ++ + +L+ L L N+ +G++
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 461 PDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVS 519
P + L + LS NR +G IP+ GRL L LK+S N G+IP EL C+ L+
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 520 LDLSNNQLSGHIPASL 535
LDL+ N +G IPA++
Sbjct: 543 LDLNTNLFNGTIPAAM 558
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 167/512 (32%), Positives = 240/512 (46%), Gaps = 63/512 (12%)
Query: 66 IELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIXXXXXXXXXXXXXXXXXTGP 125
+++S +SG S +I ++ +N+SSNQ G IP TG
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---LPLKSLQYLSLAENKFTGE 284
Query: 126 VP---IGSLSRLEILDLSNNMLSGKIPEEIG-------------SFSG------------ 157
+P G+ L LDLS N G +P G +FSG
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344
Query: 158 LKVLDLGGNVLVGEIPLSISNIT-SLQIFTLASNQLIGSIPREIGQ--LRNLKWIYLGYN 214
LKVLDL N GE+P S++N++ SL L+SN G I + Q L+ +YL N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 215 NLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILG 274
+G+IP + + + L L L +N L+G IP S G+LS LR L L+ N L G IP+ ++
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 275 LKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSN 334
+K+L + L N L+GEIP + NL + L +N TG+IP + + L +L+L +N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 335 QFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLST 394
FSG IP+ LG +L +DL+TN G IP ++FK GKI +
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIP------AAMFK-------QSGKIAANFIA 571
Query: 395 CKSLRRVRLQNNRLSGEL-------------SSEFTRLPLVYFLDISGNDLSGRIGEQKW 441
K R V ++N+ + E S + RL +I+ G
Sbjct: 572 GK--RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629
Query: 442 EMTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISR 500
S+ L+++ N SG +P GS L L+L N SG+IP G L L L +S
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689
Query: 501 NKLFGDIPEELSSCKKLVSLDLSNNQLSGHIP 532
NKL G IP+ +S+ L +DLSNN LSG IP
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 135/398 (33%), Positives = 190/398 (47%), Gaps = 23/398 (5%)
Query: 228 TSLNHLDLVYNNLTGQIPP--SFGNLSNLRYLFLYQNKLTGSIPKSILG---LKSLVSFD 282
SL LDL N+L+G + S G+ S L++L + N L P + G L SL D
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLD 157
Query: 283 LSDNYLSG-EIPEEVIQLQNLEILHLF--SNNFTGKIPSSLASMPKLQVLQLWSNQFSGE 339
LS N +SG + V+ E+ HL N +G + ++ L+ L + SN FS
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTG 215
Query: 340 IPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLR 399
IP LG + L +D+S N L+G + L L + SN G IP KSL+
Sbjct: 216 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 272
Query: 400 RVRLQNNRLSGELSSEFT-RLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSG 458
+ L N+ +GE+ + + LD+SGN G + + L+ L L+ NNFSG
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332
Query: 459 KLP-DSFGSDQ-LENLDLSENRFSGTIPRSFGRLS-ELMQLKISRNKLFGDIPEELSSCK 515
+LP D+ + L+ LDLS N FSG +P S LS L+ L +S N G I L
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392
Query: 516 K--LVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHN 573
K L L L NN +G IP +LS L L LS N LSG IP +LG ++ L + + N
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452
Query: 574 HFHGSLPSTGAFLAINATAVAG-NDLCGGDSTSGLPPC 610
G +P ++ T + NDL G+ SGL C
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLT-GEIPSGLSNC 489
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 143/295 (48%), Gaps = 23/295 (7%)
Query: 672 KSLTIDEI-ISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPD 730
K ++ E+ ++S N G+ G YK R LA+ VK++ + T +
Sbjct: 18 KRFSLRELQVASDNFXNKNILGRGGFGKVYKGR-LADGXLVAVKRLKEERTQGGELQFQT 76
Query: 731 VSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN-------LSWERRRKV 783
+ + +H N++RL G C + LVY Y+ ++ LR L W +R+++
Sbjct: 77 EVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRI 136
Query: 784 AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS-- 841
A+G A+ L +LH HC P ++ DV +++D +E + GLA D K +
Sbjct: 137 ALGSARGLAYLHDHCDPKIIHRDVKAANILLD--EEFEAVVGDFGLAKLMDYKDXHVXXA 194
Query: 842 -----AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHES---IVEWARY 893
++APE + +EK D++G+G++L++L+TG+ D ++ +++W +
Sbjct: 195 VRGXIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKG 254
Query: 894 CYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE 948
+ L+ VD ++G+ E+ +++ +AL CT P RP S+V + LE
Sbjct: 255 LLKEKKLEALVDVDLQGNYKD--EEVEQLIQVALLCTQSSPMERPKMSEVVRMLE 307
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 143/295 (48%), Gaps = 23/295 (7%)
Query: 672 KSLTIDEI-ISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPD 730
K ++ E+ ++S N G+ G YK R LA+ VK++ + +
Sbjct: 26 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGR-LADGTLVAVKRLKEERXQGGELQFQT 84
Query: 731 VSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN-------LSWERRRKV 783
+ + +H N++RL G C + LVY Y+ ++ LR L W +R+++
Sbjct: 85 EVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRI 144
Query: 784 AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN---- 839
A+G A+ L +LH HC P ++ DV +++D +E + GLA D K +
Sbjct: 145 ALGSARGLAYLHDHCDPKIIHRDVKAANILLD--EEFEAVVGDFGLAKLMDYKDXHVXXA 202
Query: 840 ---SSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPAD-ADFGVHESIV--EWARY 893
+ ++APE + +EK D++G+G++L++L+TG+ D A + ++ +W +
Sbjct: 203 VRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKG 262
Query: 894 CYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE 948
+ L+ VD ++G+ E+ +++ +AL CT P RP S+V + LE
Sbjct: 263 LLKEKKLEALVDVDLQGNYKD--EEVEQLIQVALLCTQSSPMERPKMSEVVRMLE 315
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 105 bits (263), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 120/232 (51%), Gaps = 8/232 (3%)
Query: 220 IPKEIGDLTSLNHLDLV-YNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSL 278
IP + +L LN L + NNL G IPP+ L+ L YL++ ++G+IP + +K+L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 279 VSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKL-QVLQLWSNQFS 337
V+ D S N LSG +P + L NL + N +G IP S S KL + + N+ +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 338 GEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKS 397
G+IP NL +DLS N L G + K+ L NSL + + K+
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKN 245
Query: 398 LRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGE----QKWEMTS 445
L + L+NNR+ G L T+L ++ L++S N+L G I + Q++++++
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 144/309 (46%), Gaps = 35/309 (11%)
Query: 18 CHGAELELLLSFKSTVNDPYNFLSNWDSSVTFCK--WNGISCQNSTH---VNAIELSAKN 72
C+ + + LL K + +P LS+W + C W G+ C T VN ++LS N
Sbjct: 3 CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 73 ISGK--ISSSIFHLPHVESINLSS-NQLSGEIPSDIXXXXXXXXXXXXXXXXXTGPVPIG 129
+ I SS+ +LP++ + + N L G IP I
Sbjct: 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-----------------------A 98
Query: 130 SLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLAS 189
L++L L +++ +SG IP+ + L LD N L G +P SIS++ +L T
Sbjct: 99 KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158
Query: 190 NQLIGSIPREIGQLRNL-KWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSF 248
N++ G+IP G L + + N L+G+IP +L +L +DL N L G F
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLF 217
Query: 249 GNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLF 308
G+ N + + L +N L + K L K+L DL +N + G +P+ + QL+ L L++
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 309 SNNFTGKIP 317
NN G+IP
Sbjct: 277 FNNLCGEIP 285
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 109/220 (49%), Gaps = 4/220 (1%)
Query: 172 IPLSISNITSLQIFTLAS-NQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSL 230
IP S++N+ L + N L+G IP I +L L ++Y+ + N+SG IP + + +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 231 NHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSL-VSFDLSDNYLS 289
LD YN L+G +PPS +L NL + N+++G+IP S L S +S N L+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 290 GEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNN 349
G+IP L NL + L N G S Q + L N + ++ +G N
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKN 245
Query: 350 LTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIP 389
L +DL N + G +P+ L L L + N+L G+IP
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 114/243 (46%), Gaps = 25/243 (10%)
Query: 316 IPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLF 375
IPSSLA++P L L + G NNL G IP + L
Sbjct: 68 IPSSLANLPYLNFLYI-------------GGINNLV----------GPIPPAIAKLTQLH 104
Query: 376 KLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGR 435
L + ++ G IP+ LS K+L + N LSG L + LP + + GN +SG
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 436 IGEQKWEMTSL-QMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELM 494
I + + L + ++ N +GK+P +F + L +DLS N G FG
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224
Query: 495 QLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGK 554
++ +++N L D+ ++ K L LDL NN++ G +P L+++ L L++S N L G+
Sbjct: 225 KIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 555 IPQ 557
IPQ
Sbjct: 284 IPQ 286
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 114/232 (49%), Gaps = 9/232 (3%)
Query: 382 NSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKW 441
N+L G IP +++ L + + + +SG + +++ + LD S N LSG +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 442 EMTSLQMLNLAGNNFSGKLPDSFG--SDQLENLDLSENRFSGTIPRSFGRLSELMQLKIS 499
+ +L + GN SG +PDS+G S ++ +S NR +G IP +F L+ L + +S
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205
Query: 500 RNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTL 559
RN L GD S K + L+ N L+ + + L LDL N++ G +PQ L
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 560 GRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGND-LCGGDSTSGLPPC 610
++ L +N+S N+ G +P G + +A A N LCG S LP C
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG----SPLPAC 312
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 120/241 (49%), Gaps = 12/241 (4%)
Query: 133 RLEILDLSNNMLSGK--IPEEIGSFSGLKVLDLGG-NVLVGEIPLSISNITSLQIFTLAS 189
R+ LDLS L IP + + L L +GG N LVG IP +I+ +T L +
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 190 NQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFG 249
+ G+IP + Q++ L + YN LSG +P I L +L + N ++G IP S+G
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 250 NLSNL-RYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLF 308
+ S L + + +N+LTG IP + L +L DLS N L G+ +N + +HL
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229
Query: 309 SNNFT---GKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIP 365
N+ GK+ S L L L +N+ G +P L + L +++S N L G+IP
Sbjct: 230 KNSLAFDLGKVGLS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 366 E 366
+
Sbjct: 286 Q 286
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 41/243 (16%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------NLSWERRRKVAIGIAKALR 792
HP++V L G C L+Y+Y+E L L ++SWE+R ++ IG A+ L
Sbjct: 94 HPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLH 153
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGK-----------------DEPHLRLSVPGLAYCTDS 835
+LH + +++ DV +++D D+ HL V G
Sbjct: 154 YLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVVKG------- 203
Query: 836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHE-SIVEWARYC 894
+ Y+ PE +TEK D+Y FG++L ++L +S ++ EWA
Sbjct: 204 ----TLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVES 259
Query: 895 YSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS 954
+++ L+ VDP + + + + + A+ C A RP DV LE R+
Sbjct: 260 HNNGQLEQIVDPNLADKIRP--ESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQ 317
Query: 955 SCV 957
V
Sbjct: 318 ESV 320
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 102/243 (41%), Gaps = 41/243 (16%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------NLSWERRRKVAIGIAKALR 792
HP++V L G C L+Y+Y+E L L ++SWE+R ++ IG A+ L
Sbjct: 94 HPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLH 153
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEP-----------------HLRLSVPGLAYCTDS 835
+LH + +++ DV +++D P HL V G
Sbjct: 154 YLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVVKG------- 203
Query: 836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHE-SIVEWARYC 894
+ Y+ PE +TEK D+Y FG++L ++L +S ++ EWA
Sbjct: 204 ----TLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVES 259
Query: 895 YSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS 954
+++ L+ VDP + + + + + A+ C A RP DV LE R+
Sbjct: 260 HNNGQLEQIVDPNLADKIRP--ESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQ 317
Query: 955 SCV 957
V
Sbjct: 318 ESV 320
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 66.6 bits (161), Expect = 7e-11, Method: Composition-based stats.
Identities = 50/209 (23%), Positives = 96/209 (45%), Gaps = 21/209 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
GK + KV V+K++I + T +F +V + + + HPN+++ GV
Sbjct: 19 GKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEV-KVMRCLEHPNVLKFIGVLY 77
Query: 752 SEKAAYLVYEYIEGKELSEVLRNLS----WERRRKVAIGIAKALRFLH-----------F 796
+K + EYI+G L +++++ W +R A IA + +LH
Sbjct: 78 KDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSH 137
Query: 797 HC----SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESK 852
+C + +VV D +++VD K +P S+ + + ++APE +
Sbjct: 138 NCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGR 197
Query: 853 DITEKGDIYGFGLILIDLLTGKSPADADF 881
EK D++ FG++L +++ G+ AD D+
Sbjct: 198 SYDEKVDVFSFGIVLCEII-GRVNADPDY 225
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 92/204 (45%), Gaps = 25/204 (12%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLI---MHPNIVRLHG 748
G+ G YK N+ VKK+ + ITT Q K++ H N+V L G
Sbjct: 40 GEGGFGVVYK--GYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLG 97
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLR------NLSWERRRKVAIGIAKALRFLHFHCSPSV 802
LVY Y+ L + L LSW R K+A G A + FLH
Sbjct: 98 FSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHH 154
Query: 803 VAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDI 854
+ D+ +++D + ++S GLA ++ S+ + ++AY+APE +I
Sbjct: 155 IHRDIKSANILLD--EAFTAKISDFGLARASEKFAQTVMXSRIVGTTAYMAPEALRG-EI 211
Query: 855 TEKGDIYGFGLILIDLLTGKSPAD 878
T K DIY FG++L++++TG D
Sbjct: 212 TPKSDIYSFGVVLLEIITGLPAVD 235
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 64.7 bits (156), Expect = 3e-10, Method: Composition-based stats.
Identities = 70/282 (24%), Positives = 123/282 (43%), Gaps = 46/282 (16%)
Query: 686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVR 745
E + RG GV K R A D+ +K+I + +F ++ Q + + HPNIV+
Sbjct: 14 EEVVGRGAFGVVCKAKWR--AKDV--AIKQI--ESESERKAFIVELRQLSR-VNHPNIVK 66
Query: 746 LHGVCRSEKAAYLVYEYIEGKELSEVLRN------------LSWERRRKVAIGIAKALRF 793
L+G C + LV EY EG L VL +SW + ++ + +
Sbjct: 67 LYGACLN--PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSW------CLQCSQGVAY 118
Query: 794 LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN---SSAYVAPETKE 850
LH +++ D+ P +++ L++ G A + N S+A++APE E
Sbjct: 119 LHSMQPKALIHRDLKPPNLLLVAGGTV-LKICDFGTACDIQTHMTNNKGSAAWMAPEVFE 177
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG 910
+ +EK D++ +G+IL +++T + P D + G + WA + + L
Sbjct: 178 GSNYSEKCDVFSWGIILWEVITRRKPFD-EIGGPAFRIMWAVHNGTRPPL---------- 226
Query: 911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR 952
I+N I +L C + DP+ RP ++ K + R
Sbjct: 227 ----IKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMR 264
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 64.7 bits (156), Expect = 3e-10, Method: Composition-based stats.
Identities = 70/282 (24%), Positives = 123/282 (43%), Gaps = 46/282 (16%)
Query: 686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVR 745
E + RG GV K R A D+ +K+I + +F ++ Q + + HPNIV+
Sbjct: 13 EEVVGRGAFGVVCKAKWR--AKDV--AIKQI--ESESERKAFIVELRQLSR-VNHPNIVK 65
Query: 746 LHGVCRSEKAAYLVYEYIEGKELSEVLRN------------LSWERRRKVAIGIAKALRF 793
L+G C + LV EY EG L VL +SW + ++ + +
Sbjct: 66 LYGACLN--PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSW------CLQCSQGVAY 117
Query: 794 LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN---SSAYVAPETKE 850
LH +++ D+ P +++ L++ G A + N S+A++APE E
Sbjct: 118 LHSMQPKALIHRDLKPPNLLLVAGGTV-LKICDFGTACDIQTHMTNNKGSAAWMAPEVFE 176
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG 910
+ +EK D++ +G+IL +++T + P D + G + WA + + L
Sbjct: 177 GSNYSEKCDVFSWGIILWEVITRRKPFD-EIGGPAFRIMWAVHNGTRPPL---------- 225
Query: 911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR 952
I+N I +L C + DP+ RP ++ K + R
Sbjct: 226 ----IKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMR 263
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 25/204 (12%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLI---MHPNIVRLHG 748
G+ G YK N+ VKK+ + ITT Q K++ H N+V L G
Sbjct: 40 GEGGFGVVYK--GYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLG 97
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLR------NLSWERRRKVAIGIAKALRFLHFHCSPSV 802
LVY Y+ L + L LSW R K+A G A + FLH
Sbjct: 98 FSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHH 154
Query: 803 VAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS--------KSINSSAYVAPETKESKDI 854
+ D+ +++D + ++S GLA ++ + + ++AY+APE +I
Sbjct: 155 IHRDIKSANILLD--EAFTAKISDFGLARASEKFAQTVMXXRIVGTTAYMAPEALRG-EI 211
Query: 855 TEKGDIYGFGLILIDLLTGKSPAD 878
T K DIY FG++L++++TG D
Sbjct: 212 TPKSDIYSFGVVLLEIITGLPAVD 235
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 25/204 (12%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLI---MHPNIVRLHG 748
G+ G YK N+ VKK+ + ITT Q K++ H N+V L G
Sbjct: 34 GEGGFGVVYK--GYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLG 91
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLR------NLSWERRRKVAIGIAKALRFLHFHCSPSV 802
LVY Y+ L + L LSW R K+A G A + FLH
Sbjct: 92 FSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHH 148
Query: 803 VAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS--------KSINSSAYVAPETKESKDI 854
+ D+ +++D + ++S GLA ++ + + ++AY+APE +I
Sbjct: 149 IHRDIKSANILLD--EAFTAKISDFGLARASEKFAQXVMXXRIVGTTAYMAPEALRG-EI 205
Query: 855 TEKGDIYGFGLILIDLLTGKSPAD 878
T K DIY FG++L++++TG D
Sbjct: 206 TPKSDIYSFGVVLLEIITGLPAVD 229
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 89/204 (43%), Gaps = 25/204 (12%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL---IMHPNIVRLHG 748
G+ G YK N+ VKK+ + ITT Q K+ H N+V L G
Sbjct: 31 GEGGFGVVYK--GYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVXAKCQHENLVELLG 88
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLR------NLSWERRRKVAIGIAKALRFLHFHCSPSV 802
LVY Y L + L LSW R K+A G A + FLH
Sbjct: 89 FSSDGDDLCLVYVYXPNGSLLDRLSCLDGTPPLSWHXRCKIAQGAANGINFLH---ENHH 145
Query: 803 VAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDI 854
+ D+ +++D + ++S GLA ++ S+ + ++AY APE +I
Sbjct: 146 IHRDIKSANILLD--EAFTAKISDFGLARASEKFAQXVXXSRIVGTTAYXAPEALRG-EI 202
Query: 855 TEKGDIYGFGLILIDLLTGKSPAD 878
T K DIY FG++L++++TG D
Sbjct: 203 TPKSDIYSFGVVLLEIITGLPAVD 226
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 118/275 (42%), Gaps = 37/275 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM------HPNIVR 745
GK G +K R + + +K +I ++ + +F + + HPNIV+
Sbjct: 28 GKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVK 87
Query: 746 LHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPS 801
L+G+ + +V E++ +L L + + W + ++ + IA + ++ + +P
Sbjct: 88 LYGLMHN--PPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQ-NQNPP 144
Query: 802 VVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA-------YVAPET--KESK 852
+V D+ + + DE + + + T +S++S + ++APET E +
Sbjct: 145 IVHRDLRSPNIFLQSLDE-NAPVCAKVADFGTSQQSVHSVSGLLGNFQWMAPETIGAEEE 203
Query: 853 DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV 912
TEK D Y F +IL +LTG+ P D + + + + + + P I
Sbjct: 204 SYTEKADTYSFAMILYTILTGEGPFDE--------YSYGKIKFINMIREEGLRPTIPEDC 255
Query: 913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTL 947
++E+ C +GDP RP S + K L
Sbjct: 256 PPRLRNVIEL------CWSGDPKKRPHFSYIVKEL 284
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 118/279 (42%), Gaps = 45/279 (16%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM------HPNIVR 745
GK G +K R + + +K +I ++ + +F + + HPNIV+
Sbjct: 28 GKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVK 87
Query: 746 LHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPS 801
L+G+ + +V E++ +L L + + W + ++ + IA + ++ + +P
Sbjct: 88 LYGLMHN--PPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQ-NQNPP 144
Query: 802 VVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----SKSINSSA-------YVAPET-- 848
+V D+ + + DE + P A D +S++S + ++APET
Sbjct: 145 IVHRDLRSPNIFLQSLDE-----NAPVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIG 199
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFI 908
E + TEK D Y F +IL +LTG+ P D + + + + + + P I
Sbjct: 200 AEEESYTEKADTYSFAMILYTILTGEGPFDE--------YSYGKIKFINMIREEGLRPTI 251
Query: 909 RGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTL 947
++E+ C +GDP RP S + K L
Sbjct: 252 PEDCPPRLRNVIEL------CWSGDPKKRPHFSYIVKEL 284
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 66/242 (27%), Positives = 100/242 (41%), Gaps = 20/242 (8%)
Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIF 185
VP G + + + L N +S S L +L L N L G + + +T L+
Sbjct: 25 VPTGIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQL 84
Query: 186 TLASN-QLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQI 244
L+ N QL P L +L ++L L P L +L +L L NNL
Sbjct: 85 DLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALP 144
Query: 245 PPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEI 304
+F +L NL +LFL+ N++ + GL SL L N+++ P L L
Sbjct: 145 DNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMT 204
Query: 305 LHLFSNNFTGKIPSSLASMPKLQVLQL----------------WSNQFSG---EIPSNLG 345
L+LF+NN + L + LQ L+L W +F G E+P NL
Sbjct: 205 LYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCNLP 264
Query: 346 KQ 347
++
Sbjct: 265 QR 266
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 59/222 (26%), Positives = 80/222 (36%), Gaps = 26/222 (11%)
Query: 235 LVYNNLTGQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDN-YLSGEI 292
++ N +P SF + NL L+L+ N L G + GL L DLSDN L
Sbjct: 37 FLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVD 96
Query: 293 PEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTV 352
P L +L LHL P + LQ L L N +P N
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA-LPDN--------- 146
Query: 353 IDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGEL 412
T D G+L L L N + ++ SL R+ L N ++
Sbjct: 147 --------------TFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVH 192
Query: 413 SSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGN 454
F L + L + N+LS E + SLQ L L N
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 55/202 (27%), Positives = 85/202 (42%), Gaps = 30/202 (14%)
Query: 376 KLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGN----- 430
++ L N + S +C++L + L +N L+G ++ FT L L+ LD+S N
Sbjct: 35 RIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRV 94
Query: 431 ----DLSG----------RIGEQKW------EMTSLQMLNLAGNNFSGKLPDSFGSD--Q 468
G R G Q+ + +LQ L L NN LPD+ D
Sbjct: 95 VDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLGN 153
Query: 469 LENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLS 528
L +L L NR +F L L +L + +N + P +L++L L N LS
Sbjct: 154 LTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
Query: 529 GHIPAS-LSEMPVLGQLDLSEN 549
+PA L + L L L++N
Sbjct: 214 -MLPAEVLVPLRSLQYLRLNDN 234
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 118/279 (42%), Gaps = 45/279 (16%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM------HPNIVR 745
GK G +K R + + +K +I ++ + +F + + HPNIV+
Sbjct: 28 GKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVK 87
Query: 746 LHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPS 801
L+G+ + +V E++ +L L + + W + ++ + IA + ++ + +P
Sbjct: 88 LYGLMHN--PPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQ-NQNPP 144
Query: 802 VVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----SKSINSSA-------YVAPET-- 848
+V D+ + + DE + P A D +S++S + ++APET
Sbjct: 145 IVHRDLRSPNIFLQSLDE-----NAPVCAKVADFSLSQQSVHSVSGLLGNFQWMAPETIG 199
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFI 908
E + TEK D Y F +IL +LTG+ P D + + + + + + P I
Sbjct: 200 AEEESYTEKADTYSFAMILYTILTGEGPFDE--------YSYGKIKFINMIREEGLRPTI 251
Query: 909 RGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTL 947
++E+ C +GDP RP S + K L
Sbjct: 252 PEDCPPRLRNVIEL------CWSGDPKKRPHFSYIVKEL 284
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 15/162 (9%)
Query: 730 DVSQFGKL---IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL--RNLSWERRRKVA 784
+V Q KL + HPNI+ L GVC E LV E+ G L+ VL + + + A
Sbjct: 52 NVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWA 111
Query: 785 IGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE------PHLRLSVPGLA----YCTD 834
+ IA+ + +LH ++ D+ +++ K E L+++ GLA T
Sbjct: 112 VQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTK 171
Query: 835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
+ + A++APE + ++ D++ +G++L +LLTG+ P
Sbjct: 172 MSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVP 213
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 49/219 (22%), Positives = 95/219 (43%), Gaps = 22/219 (10%)
Query: 683 TTEENLTSR-------GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDV---S 732
TT +L+ R G G+S + R L D + V K++ + SF+ +
Sbjct: 5 TTPSHLSDRYELGEILGFGGMSEVHLARDL-RDHRDVAVKVLRADLARDPSFYLRFRREA 63
Query: 733 QFGKLIMHPNIVRLHGVCRSEKAA----YLVYEYIEGKELSEVLRNLSWERRRKVAIGIA 788
Q + HP IV ++ +E A Y+V EY++G L +++ ++ IA
Sbjct: 64 QNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIA 123
Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR-------LSVPGLAYCTDSKSINSS 841
A + L+F ++ DV P +++ + + ++ G + + I ++
Sbjct: 124 DACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTA 183
Query: 842 AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
Y++PE + + D+Y G +L ++LTG+ P D
Sbjct: 184 QYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD 222
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 49/219 (22%), Positives = 95/219 (43%), Gaps = 22/219 (10%)
Query: 683 TTEENLTSR-------GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDV---S 732
TT +L+ R G G+S + R L D + V K++ + SF+ +
Sbjct: 5 TTPSHLSDRYELGEILGFGGMSEVHLARDL-RDHRDVAVKVLRADLARDPSFYLRFRREA 63
Query: 733 QFGKLIMHPNIVRLHGVCRSEKAA----YLVYEYIEGKELSEVLRNLSWERRRKVAIGIA 788
Q + HP IV ++ +E A Y+V EY++G L +++ ++ IA
Sbjct: 64 QNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIA 123
Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR-------LSVPGLAYCTDSKSINSS 841
A + L+F ++ DV P +++ + + ++ G + + I ++
Sbjct: 124 DACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTA 183
Query: 842 AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
Y++PE + + D+Y G +L ++LTG+ P D
Sbjct: 184 QYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD 222
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 1/210 (0%)
Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIF 185
VP+G + + + L N +S + L +L L NVL + + + L+
Sbjct: 25 VPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL 84
Query: 186 TLASNQLIGSI-PREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQI 244
L+ N + S+ P L L ++L L P L +L +L L N L
Sbjct: 85 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 144
Query: 245 PPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEI 304
+F +L NL +LFL+ N+++ ++ GL SL L N ++ P L L
Sbjct: 145 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 204
Query: 305 LHLFSNNFTGKIPSSLASMPKLQVLQLWSN 334
L+LF+NN + +LA + LQ L+L N
Sbjct: 205 LYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 57/222 (25%), Positives = 77/222 (34%), Gaps = 26/222 (11%)
Query: 235 LVYNNLTGQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDN-YLSGEI 292
++ N +P SF NL L+L+ N L + GL L DLSDN L
Sbjct: 37 FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 96
Query: 293 PEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTV 352
P L L LHL P + LQ L L N +P
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPD---------- 145
Query: 353 IDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGEL 412
+T D G+L L L N + + SL R+ L NR++
Sbjct: 146 -------------DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 192
Query: 413 SSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGN 454
F L + L + N+LS E + +LQ L L N
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 28/201 (13%)
Query: 376 KLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGN----- 430
++ L N + S C++L + L +N L+ ++ FT L L+ LD+S N
Sbjct: 35 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 94
Query: 431 ----DLSG----------RIGEQKWE------MTSLQMLNLAGNNFSGKLPDSFGSD--Q 468
G R G Q+ + +LQ L L N LPD D
Sbjct: 95 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGN 153
Query: 469 LENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLS 528
L +L L NR S R+F L L +L + +N++ P +L++L L N LS
Sbjct: 154 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 213
Query: 529 GHIPASLSEMPVLGQLDLSEN 549
+L+ + L L L++N
Sbjct: 214 ALPTEALAPLRALQYLRLNDN 234
Score = 36.2 bits (82), Expect = 0.097, Method: Composition-based stats.
Identities = 42/162 (25%), Positives = 60/162 (37%), Gaps = 24/162 (14%)
Query: 125 PVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQI 184
P L RL L L L P G F GL +LQ
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGP---GLFRGL---------------------AALQY 132
Query: 185 FTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQI 244
L N L L NL ++L N +S + L SL+ L L N +
Sbjct: 133 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 192
Query: 245 PPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDN 286
P +F +L L L+L+ N L+ +++ L++L L+DN
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 44/112 (39%)
Query: 124 GPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQ 183
GP L+ L+ L L +N L + L L L GN + + + SL
Sbjct: 120 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 179
Query: 184 IFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDL 235
L N++ P L L +YL NNLS + + L +L +L L
Sbjct: 180 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 231
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 1/210 (0%)
Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIF 185
VP+G + + + L N +S + L +L L NVL + + + L+
Sbjct: 26 VPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL 85
Query: 186 TLASNQLIGSI-PREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQI 244
L+ N + S+ P L L ++L L P L +L +L L N L
Sbjct: 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145
Query: 245 PPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEI 304
+F +L NL +LFL+ N+++ ++ GL SL L N ++ P L L
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205
Query: 305 LHLFSNNFTGKIPSSLASMPKLQVLQLWSN 334
L+LF+NN + +LA + LQ L+L N
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 57/222 (25%), Positives = 77/222 (34%), Gaps = 26/222 (11%)
Query: 235 LVYNNLTGQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDN-YLSGEI 292
++ N +P SF NL L+L+ N L + GL L DLSDN L
Sbjct: 38 FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 97
Query: 293 PEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTV 352
P L L LHL P + LQ L L N +P
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPD---------- 146
Query: 353 IDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGEL 412
+T D G+L L L N + + SL R+ L NR++
Sbjct: 147 -------------DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 413 SSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGN 454
F L + L + N+LS E + +LQ L L N
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 28/201 (13%)
Query: 376 KLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGN----- 430
++ L N + S C++L + L +N L+ ++ FT L L+ LD+S N
Sbjct: 36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95
Query: 431 ----DLSG----------RIGEQKWE------MTSLQMLNLAGNNFSGKLPDSFGSD--Q 468
G R G Q+ + +LQ L L N LPD D
Sbjct: 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGN 154
Query: 469 LENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLS 528
L +L L NR S R+F L L +L + +N++ P +L++L L N LS
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
Query: 529 GHIPASLSEMPVLGQLDLSEN 549
+L+ + L L L++N
Sbjct: 215 ALPTEALAPLRALQYLRLNDN 235
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 42/162 (25%), Positives = 60/162 (37%), Gaps = 24/162 (14%)
Query: 125 PVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQI 184
P L RL L L L P G F GL +LQ
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGP---GLFRGL---------------------AALQY 133
Query: 185 FTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQI 244
L N L L NL ++L N +S + L SL+ L L N +
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 245 PPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDN 286
P +F +L L L+L+ N L+ +++ L++L L+DN
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 44/112 (39%)
Query: 124 GPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQ 183
GP L+ L+ L L +N L + L L L GN + + + SL
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180
Query: 184 IFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDL 235
L N++ P L L +YL NNLS + + L +L +L L
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 49/219 (22%), Positives = 95/219 (43%), Gaps = 22/219 (10%)
Query: 683 TTEENLTSR-------GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDV---S 732
TT +L+ R G G+S + R L D + V K++ + SF+ +
Sbjct: 5 TTPSHLSDRYELGEILGFGGMSEVHLARDL-RDHRDVAVKVLRADLARDPSFYLRFRREA 63
Query: 733 QFGKLIMHPNIVRLHGVCRSEKAA----YLVYEYIEGKELSEVLRNLSWERRRKVAIGIA 788
Q + HP IV ++ +E A Y+V EY++G L +++ ++ IA
Sbjct: 64 QNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIA 123
Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-------RLSVPGLAYCTDSKSINSS 841
A + L+F ++ DV P +++ + + ++ G + + I ++
Sbjct: 124 DACQALNFSHQNGIIHRDVKPANILISATNAVKVVDFGIARAIADSGNSVXQTAAVIGTA 183
Query: 842 AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
Y++PE + + D+Y G +L ++LTG+ P D
Sbjct: 184 QYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD 222
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSI-SNITSLQI 184
VP G + +IL L +N ++ P S LK L LG N L G +P+ + ++T L +
Sbjct: 34 VPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTV 92
Query: 185 FTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQI 244
L +NQL +L +LK +++ N L+ E+P+ I LT L HL L N L
Sbjct: 93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP 151
Query: 245 PPSFGNLSNLRYLFLYQN 262
+F LS+L + +L+ N
Sbjct: 152 HGAFDRLSSLTHAYLFGN 169
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 64/133 (48%), Gaps = 5/133 (3%)
Query: 180 TSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGD-LTSLNHLDLVYN 238
T+ QI L NQ+ P L NLK +YLG N L G +P + D LT L LDL N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98
Query: 239 NLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVI- 297
LT F L +L+ LF+ NKLT +P+ I L L L N L IP
Sbjct: 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFD 156
Query: 298 QLQNLEILHLFSN 310
+L +L +LF N
Sbjct: 157 RLSSLTHAYLFGN 169
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 3/131 (2%)
Query: 301 NLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNL-GKQNNLTVIDLSTNF 359
N +IL+L N T P S+ L+ L L SNQ G +P + LTV+DL TN
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ 99
Query: 360 LTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRL 419
LT +P + D K + + ++P + L + L N+L F RL
Sbjct: 100 LT-VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158
Query: 420 PLVYFLDISGN 430
+ + GN
Sbjct: 159 SSLTHAYLFGN 169
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 453 GNNFSGKLP----DSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIP 508
G+N G LP DS QL LDL N+ + F RL L +L + NKL ++P
Sbjct: 72 GSNQLGALPVGVFDSLT--QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELP 128
Query: 509 EELSSCKKLVSLDLSNNQL 527
+ L L L NQL
Sbjct: 129 RGIERLTHLTHLALDQNQL 147
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 21/151 (13%)
Query: 737 LIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK------- 789
++ HP I+R+ G + + +++ +YIEG EL +LR + ++ +AK
Sbjct: 62 IVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLR-----KSQRFPNPVAKFYAAEVC 116
Query: 790 -ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSI--NSSAYVA 845
AL +LH S ++ D+ P +++D H++++ G A Y D + Y+A
Sbjct: 117 LALEYLH---SKDIIYRDLKPENILLDKNG--HIKITDFGFAKYVPDVTYXLCGTPDYIA 171
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
PE +K + D + FG+++ ++L G +P
Sbjct: 172 PEVVSTKPYNKSIDWWSFGILIYEMLAGYTP 202
>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2 (rsk2)
pdb|4D9U|A Chain A, Rsk2 C-Terminal Kinase Domain, (E)-Tert-Butyl
3-(4-Amino-7-(3-
Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
pdb|4D9T|A Chain A, Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl
3-(4-Amino-7-
(3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
Length = 342
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 18/182 (9%)
Query: 706 ANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG 765
A +M+F VK IID + + + ++G+ HPNI+ L V K Y+V E ++G
Sbjct: 45 ATNMEFAVK-IIDKSKRDPTEEIEILLRYGQ---HPNIITLKDVYDDGKYVYVVTELMKG 100
Query: 766 KE-LSEVLRNLSWERRRKVAI--GIAKALRFLHFHCSPSVVAGDVSPGKVI-VDGKDEPH 821
E L ++LR + R A+ I K + +LH + VV D+ P ++ VD P
Sbjct: 101 GELLDKILRQKFFSEREASAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPE 157
Query: 822 -LRLSVPGLAYCTDSKS------INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGK 874
+R+ G A +++ ++ +VAPE E + DI+ G++L +LTG
Sbjct: 158 SIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGY 217
Query: 875 SP 876
+P
Sbjct: 218 TP 219
>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
pdb|2WNT|B Chain B, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
Length = 330
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 18/182 (9%)
Query: 706 ANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG 765
A +M++ VK +ID + S + ++G+ HPNI+ L V K YLV E + G
Sbjct: 50 ATNMEYAVK-VIDKSKRDPSEEIEILLRYGQ---HPNIITLKDVYDDGKHVYLVTELMRG 105
Query: 766 KE-LSEVLRNLSWERRRK--VAIGIAKALRFLHFHCSPSVVAGDVSPGKVI-VDGKDEPH 821
E L ++LR + R V I K + +LH S VV D+ P ++ VD P
Sbjct: 106 GELLDKILRQKFFSEREASFVLHTIGKTVEYLH---SQGVVHRDLKPSNILYVDESGNPE 162
Query: 822 -LRLSVPGLAYCTDSKS------INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGK 874
LR+ G A +++ ++ +VAPE + + E DI+ G++L +L G
Sbjct: 163 CLRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGY 222
Query: 875 SP 876
+P
Sbjct: 223 TP 224
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 57/213 (26%), Positives = 96/213 (45%), Gaps = 22/213 (10%)
Query: 686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL--IMHPNI 743
E L + G K+R +D + +V K +D ++T + VS+ L + HPNI
Sbjct: 9 EVLYTIGTGSYGRCQKIRR-KSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNI 67
Query: 744 VRLHG--VCRSEKAAYLVYEYIEGKELSEVLRNLSWERRR-------KVAIGIAKALRFL 794
VR + + R+ Y+V EY EG +L+ V+ + ER+ +V + AL+
Sbjct: 68 VRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKEC 127
Query: 795 HFHCSP--SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS------INSSAYVAP 846
H +V+ D+ P V +DGK +++L GLA + + + + Y++P
Sbjct: 128 HRRSDGGHTVLHRDLKPANVFLDGKQ--NVKLGDFGLARILNHDTSFAKTFVGTPYYMSP 185
Query: 847 ETKESKDITEKGDIYGFGLILIDLLTGKSPADA 879
E EK DI+ G +L +L P A
Sbjct: 186 EQMNRMSYNEKSDIWSLGCLLYELCALMPPFTA 218
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 57/213 (26%), Positives = 96/213 (45%), Gaps = 22/213 (10%)
Query: 686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL--IMHPNI 743
E L + G K+R +D + +V K +D ++T + VS+ L + HPNI
Sbjct: 9 EVLYTIGTGSYGRCQKIRR-KSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNI 67
Query: 744 VRLHG--VCRSEKAAYLVYEYIEGKELSEVLRNLSWERRR-------KVAIGIAKALRFL 794
VR + + R+ Y+V EY EG +L+ V+ + ER+ +V + AL+
Sbjct: 68 VRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKEC 127
Query: 795 HFHCSP--SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS------INSSAYVAP 846
H +V+ D+ P V +DGK +++L GLA + + + + Y++P
Sbjct: 128 HRRSDGGHTVLHRDLKPANVFLDGKQ--NVKLGDFGLARILNHDTSFAKAFVGTPYYMSP 185
Query: 847 ETKESKDITEKGDIYGFGLILIDLLTGKSPADA 879
E EK DI+ G +L +L P A
Sbjct: 186 EQMNRMSYNEKSDIWSLGCLLYELCALMPPFTA 218
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 48/218 (22%), Positives = 95/218 (43%), Gaps = 20/218 (9%)
Query: 683 TTEENLTSRGKKGVSSSYKVRS---LANDMQF---VVKKIIDVNTITTSSFWPDV---SQ 733
TT +L+ R + G + S LA D++ V K++ + SF+ +Q
Sbjct: 5 TTPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQ 64
Query: 734 FGKLIMHPNIVRLHGVCRSEKAA----YLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK 789
+ HP IV ++ +E A Y+V EY++G L +++ ++ IA
Sbjct: 65 NAAALNHPAIVAVYATGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIAD 124
Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR-------LSVPGLAYCTDSKSINSSA 842
A + L+F ++ DV P +++ + + ++ G + + I ++
Sbjct: 125 ACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQ 184
Query: 843 YVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
Y++PE + + D+Y G +L ++LTG+ P D
Sbjct: 185 YLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD 222
>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
pdb|3RNY|B Chain B, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
Length = 346
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 18/182 (9%)
Query: 706 ANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG 765
A +M++ VK +ID + S + ++G+ HPNI+ L V K YLV E + G
Sbjct: 50 ATNMEYAVK-VIDKSKRDPSEEIEILLRYGQ---HPNIITLKDVYDDGKHVYLVTELMRG 105
Query: 766 KE-LSEVLRNLSWERRRK--VAIGIAKALRFLHFHCSPSVVAGDVSPGKVI-VDGKDEPH 821
E L ++LR + R V I K + +LH S VV D+ P ++ VD P
Sbjct: 106 GELLDKILRQKFFSEREASFVLHTIGKTVEYLH---SQGVVHRDLKPSNILYVDESGNPE 162
Query: 822 -LRLSVPGLAYCTDSKS------INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGK 874
LR+ G A +++ ++ +VAPE + + E DI+ G++L +L G
Sbjct: 163 CLRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGY 222
Query: 875 SP 876
+P
Sbjct: 223 TP 224
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 22/213 (10%)
Query: 686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL--IMHPNI 743
E L + G K+R +D + +V K +D ++T + VS+ L + HPNI
Sbjct: 9 EVLYTIGTGSYGRCQKIRR-KSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNI 67
Query: 744 VRLHG--VCRSEKAAYLVYEYIEGKELSEVLRNLSWERRR-------KVAIGIAKALRFL 794
VR + + R+ Y+V EY EG +L+ V+ + ER+ +V + AL+
Sbjct: 68 VRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKEC 127
Query: 795 HFHCSP--SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS------INSSAYVAP 846
H +V+ D+ P V +DGK +++L GLA + + + Y++P
Sbjct: 128 HRRSDGGHTVLHRDLKPANVFLDGKQ--NVKLGDFGLARILNHDEDFAKEFVGTPYYMSP 185
Query: 847 ETKESKDITEKGDIYGFGLILIDLLTGKSPADA 879
E EK DI+ G +L +L P A
Sbjct: 186 EQMNRMSYNEKSDIWSLGCLLYELCALMPPFTA 218
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 48/218 (22%), Positives = 95/218 (43%), Gaps = 20/218 (9%)
Query: 683 TTEENLTSRGKKGVSSSYKVRS---LANDMQF---VVKKIIDVNTITTSSFWPDV---SQ 733
TT +L+ R + G + S LA D++ V K++ + SF+ +Q
Sbjct: 22 TTPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQ 81
Query: 734 FGKLIMHPNIVRLHGVCRSEKAA----YLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK 789
+ HP IV ++ +E A Y+V EY++G L +++ ++ IA
Sbjct: 82 NAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIAD 141
Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR-------LSVPGLAYCTDSKSINSSA 842
A + L+F ++ DV P +++ + + ++ G + + I ++
Sbjct: 142 ACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQ 201
Query: 843 YVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
Y++PE + + D+Y G +L ++LTG+ P D
Sbjct: 202 YLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD 239
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 48/218 (22%), Positives = 95/218 (43%), Gaps = 20/218 (9%)
Query: 683 TTEENLTSRGKKGVSSSYKVRS---LANDMQF---VVKKIIDVNTITTSSFWPDV---SQ 733
TT +L+ R + G + S LA D++ V K++ + SF+ +Q
Sbjct: 5 TTPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQ 64
Query: 734 FGKLIMHPNIVRLHGVCRSEKAA----YLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK 789
+ HP IV ++ +E A Y+V EY++G L +++ ++ IA
Sbjct: 65 NAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIAD 124
Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR-------LSVPGLAYCTDSKSINSSA 842
A + L+F ++ DV P +++ + + ++ G + + I ++
Sbjct: 125 ACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQ 184
Query: 843 YVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
Y++PE + + D+Y G +L ++LTG+ P D
Sbjct: 185 YLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD 222
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 18/150 (12%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK-ALRFLHF 796
+ HP IV+LH ++E YL+ +++ G +L L V +A+ AL H
Sbjct: 84 VNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHL 143
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN----------SSAYVAP 846
H S ++ D+ P +++D +E H++L+ GL+ +SI+ + Y+AP
Sbjct: 144 H-SLGIIYRDLKPENILLD--EEGHIKLTDFGLS----KESIDHEKKAYSFCGTVEYMAP 196
Query: 847 ETKESKDITEKGDIYGFGLILIDLLTGKSP 876
E + T+ D + FG+++ ++LTG P
Sbjct: 197 EVVNRRGHTQSADWWSFGVLMFEMLTGTLP 226
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 18/150 (12%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK-ALRFLHF 796
+ HP IV+LH ++E YL+ +++ G +L L V +A+ AL H
Sbjct: 83 VNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHL 142
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN----------SSAYVAP 846
H S ++ D+ P +++D +E H++L+ GL+ +SI+ + Y+AP
Sbjct: 143 H-SLGIIYRDLKPENILLD--EEGHIKLTDFGLS----KESIDHEKKAYSFCGTVEYMAP 195
Query: 847 ETKESKDITEKGDIYGFGLILIDLLTGKSP 876
E + T+ D + FG+++ ++LTG P
Sbjct: 196 EVVNRRGHTQSADWWSFGVLMFEMLTGTLP 225
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 88/173 (50%), Gaps = 15/173 (8%)
Query: 715 KIIDVNTITTSSFWPDVSQFG--KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL-SEV 771
KII +++TSS + + KL+ HPNI++L+ ++ YLV E +G EL E+
Sbjct: 68 KIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEI 127
Query: 772 LRNLSWERRRKVAI--GIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPG 828
+ + + I + + +LH H ++V D+ P ++++ K++ L ++ G
Sbjct: 128 IHRMKFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFG 184
Query: 829 LAYCTDSKS-----INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
L+ +++ + ++ Y+APE K EK D++ G+IL LL G P
Sbjct: 185 LSAVFENQKKMKERLGTAYYIAPEVLRKK-YDEKCDVWSIGVILFILLAGYPP 236
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY E+ + L+ LS ++ A I + L +
Sbjct: 70 LRHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKLSKFDEQRTATYITELANALSYC 129
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 130 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 185
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 186 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 214
>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|B Chain B, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|C Chain C, A Novel Small Molecule Apkc Inhibitor
Length = 349
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELS---EVLRNLSWERRRKVAIGIAKALRFLHF 796
HP +V LH ++E + V EY+ G +L + R L E R + I+ AL +LH
Sbjct: 65 HPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLH- 123
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY------CTDSKSINSSAYVAPETKE 850
++ D+ V++D E H++L+ G+ T S + Y+APE
Sbjct: 124 --ERGIIYRDLKLDNVLLDS--EGHIKLTDYGMCKEGLRPGDTTSXFCGTPNYIAPEILR 179
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPAD 878
+D D + G+++ +++ G+SP D
Sbjct: 180 GEDYGFSVDWWALGVLMFEMMAGRSPFD 207
>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical
Protein Kinase C-Iota
Length = 364
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELS---EVLRNLSWERRRKVAIGIAKALRFLHF 796
HP +V LH ++E + V EY+ G +L + R L E R + I+ AL +LH
Sbjct: 80 HPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLH- 138
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY------CTDSKSINSSAYVAPETKE 850
++ D+ V++D E H++L+ G+ T S + Y+APE
Sbjct: 139 --ERGIIYRDLKLDNVLLDS--EGHIKLTDYGMCKEGLRPGDTTSXFCGTPNYIAPEILR 194
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPAD 878
+D D + G+++ +++ G+SP D
Sbjct: 195 GEDYGFSVDWWALGVLMFEMMAGRSPFD 222
>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From
Par-3
Length = 396
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELS---EVLRNLSWERRRKVAIGIAKALRFLHF 796
HP +V LH ++E + V EY+ G +L + R L E R + I+ AL +LH
Sbjct: 112 HPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLH- 170
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY------CTDSKSINSSAYVAPETKE 850
++ D+ V++D E H++L+ G+ T S + Y+APE
Sbjct: 171 --ERGIIYRDLKLDNVLLDS--EGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILR 226
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPAD 878
+D D + G+++ +++ G+SP D
Sbjct: 227 GEDYGFSVDWWALGVLMFEMMAGRSPFD 254
>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8W|B Chain B, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|B Chain B, Crystal Structure Of Pkciota Kinase Domain
Length = 345
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELS---EVLRNLSWERRRKVAIGIAKALRFLHF 796
HP +V LH ++E + V EY+ G +L + R L E R + I+ AL +LH
Sbjct: 69 HPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLH- 127
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY------CTDSKSINSSAYVAPETKE 850
++ D+ V++D E H++L+ G+ T S + Y+APE
Sbjct: 128 --ERGIIYRDLKLDNVLLDS--EGHIKLTDYGMCKEGLRPGDTTSXFCGTPNYIAPEILR 183
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPAD 878
+D D + G+++ +++ G+SP D
Sbjct: 184 GEDYGFSVDWWALGVLMFEMMAGRSPFD 211
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 10/144 (6%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK-ALRFLHFHC 798
HP IV+LH ++E YL+ +++ G +L L V +A+ AL H H
Sbjct: 85 HPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLH- 143
Query: 799 SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT---DSKSIN---SSAYVAPETKESK 852
S ++ D+ P +++D +E H++L+ GL+ + + K+ + + Y+APE +
Sbjct: 144 SLGIIYRDLKPENILLD--EEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRR 201
Query: 853 DITEKGDIYGFGLILIDLLTGKSP 876
T+ D + FG+++ ++LTG P
Sbjct: 202 GHTQSADWWSFGVLMFEMLTGTLP 225
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY E+ + L+ LS ++ A I + L +
Sbjct: 70 LRHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKLSKFDEQRTATYITELANALSYC 129
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S Y+ PE E
Sbjct: 130 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRXXLXGTLDYLPPEMIEG 185
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 186 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 214
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
G+ Y L ND + + + +N IT +VSQF +IM HPN++
Sbjct: 44 GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 100
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
L G+C RSE + +V Y++ +L +RN + K IG +AK ++FL S
Sbjct: 101 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFL---ASK 157
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS----------AYVAPETKE 850
V D++ ++D K ++++ GLA K +S ++A E+ +
Sbjct: 158 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ 215
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
++ T K D++ FG++L +L+T +P D
Sbjct: 216 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 245
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
G+ Y L ND + + + +N IT +VSQF +IM HPN++
Sbjct: 40 GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 96
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
L G+C RSE + +V Y++ +L +RN + K IG +AK ++FL S
Sbjct: 97 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFL---ASK 153
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS----------AYVAPETKE 850
V D++ ++D K ++++ GLA K +S ++A E+ +
Sbjct: 154 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ 211
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
++ T K D++ FG++L +L+T +P D
Sbjct: 212 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 241
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
G+ Y L ND + + + +N IT +VSQF +IM HPN++
Sbjct: 37 GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 93
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
L G+C RSE + +V Y++ +L +RN + K IG +AK ++FL S
Sbjct: 94 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFL---ASK 150
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS----------AYVAPETKE 850
V D++ ++D K ++++ GLA K +S ++A E+ +
Sbjct: 151 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ 208
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
++ T K D++ FG++L +L+T +P D
Sbjct: 209 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 238
>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
Length = 319
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 14/178 (7%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQ--FGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS 769
V KIID + +SS + K++ HPNIV+L V +EK YLV EY G E+
Sbjct: 35 VAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVF 94
Query: 770 EVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL 829
+ L W + ++ + + + + +V D+ +++D + + +
Sbjct: 95 DYLVAHGWMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDAD----MNIKIADF 150
Query: 830 AYCTDSKSIN-------SSAYVAPETKESKDIT-EKGDIYGFGLILIDLLTGKSPADA 879
+ + N S Y APE + K + D++ G+IL L++G P D
Sbjct: 151 GFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG 208
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 15/153 (9%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR------NLSWERRRKVAIGIAK 789
K + HPNIV G +V EY+ L +L L RR +A +AK
Sbjct: 89 KRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAK 148
Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA------YCTDSKSINSSAY 843
+ +LH + +P +V D+ ++VD K +++ GL+ + + + +
Sbjct: 149 GMNYLH-NRNPPIVHRDLKSPNLLVDKKYT--VKVCDFGLSRLKASXFLXSKXAAGTPEW 205
Query: 844 VAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
+APE + EK D+Y FG+IL +L T + P
Sbjct: 206 MAPEVLRDEPSNEKSDVYSFGVILWELATLQQP 238
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
G+ Y L ND + + + +N IT +VSQF +IM HPN++
Sbjct: 39 GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 95
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
L G+C RSE + +V Y++ +L +RN + K IG +AK ++FL S
Sbjct: 96 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFL---ASK 152
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS----------AYVAPETKE 850
V D++ ++D K ++++ GLA K +S ++A E+ +
Sbjct: 153 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ 210
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
++ T K D++ FG++L +L+T +P D
Sbjct: 211 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 240
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
G+ Y L ND + + + +N IT +VSQF +IM HPN++
Sbjct: 39 GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 95
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
L G+C RSE + +V Y++ +L +RN + K IG +AK ++FL S
Sbjct: 96 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFL---ASK 152
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS----------AYVAPETKE 850
V D++ ++D K ++++ GLA K +S ++A E+ +
Sbjct: 153 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ 210
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
++ T K D++ FG++L +L+T +P D
Sbjct: 211 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 240
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 68 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 127
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S +A Y+ PE E
Sbjct: 128 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEG 183
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 184 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 212
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
G+ Y L ND + + + +N IT +VSQF +IM HPN++
Sbjct: 40 GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 96
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
L G+C RSE + +V Y++ +L +RN + K IG +AK ++FL S
Sbjct: 97 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFL---ASK 153
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS----------AYVAPETKE 850
V D++ ++D K ++++ GLA K +S ++A E+ +
Sbjct: 154 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMLDKEFDSVHNKTGAKLPVKWMALESLQ 211
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
++ T K D++ FG++L +L+T +P D
Sbjct: 212 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 241
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 65 LRHPNILRLYGYFHDSTRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S +A Y+ PE E
Sbjct: 125 HSKKVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEG 180
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 209
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
G+ Y L ND + + + +N IT +VSQF +IM HPN++
Sbjct: 98 GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 154
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
L G+C RSE + +V Y++ +L +RN + K IG +AK ++FL S
Sbjct: 155 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFL---ASK 211
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS----------AYVAPETKE 850
V D++ ++D K ++++ GLA K +S ++A E+ +
Sbjct: 212 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ 269
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
++ T K D++ FG++L +L+T +P D
Sbjct: 270 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 299
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 23/155 (14%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKV----AIGIAKAL 791
K + HPNI++L V +K YLV E+ EG EL E + N R K A I K +
Sbjct: 101 KSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIIN-----RHKFDECDAANIMKQI 155
Query: 792 R----FLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLA--YCTDSK---SINSS 841
+LH H ++V D+ P ++++ K+ ++++ GL+ + D K + ++
Sbjct: 156 LSGICYLHKH---NIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTA 212
Query: 842 AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
Y+APE + K EK D++ G+I+ LL G P
Sbjct: 213 YYIAPEVLKKK-YNEKCDVWSCGVIMYILLCGYPP 246
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 65 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S +A Y+ PE E
Sbjct: 125 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEG 180
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 209
>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In
Complex With An Mk-2461 Analog With Specificity For The
Activated Receptor
pdb|3R7O|A Chain A, Structure Of Dually Phosphorylated C-Met Receptor Kinase
In Complex With An Mk-2461 Analog
Length = 307
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
G+ Y L ND + + + +N IT +VSQF +IM HPN++
Sbjct: 38 GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 94
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
L G+C RSE + +V Y++ +L +RN + K IG +AK +++L S
Sbjct: 95 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 151
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSA-------YVAPETKE 850
V D++ ++D K ++++ GLA Y + S+++ ++A E+ +
Sbjct: 152 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEXXSVHNKTGAKLPVKWMALESLQ 209
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
++ T K D++ FG++L +L+T +P D
Sbjct: 210 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 239
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
G+ Y L ND + + + +N IT +VSQF +IM HPN++
Sbjct: 58 GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 114
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
L G+C RSE + +V Y++ +L +RN + K IG +AK +++L S
Sbjct: 115 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 171
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSA-------YVAPETKE 850
V D++ ++D K ++++ GLA Y + S+++ ++A E+ +
Sbjct: 172 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQ 229
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
++ T K D++ FG++L +L+T +P D
Sbjct: 230 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 259
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
G+ Y L ND + + + +N IT +VSQF +IM HPN++
Sbjct: 57 GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 113
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
L G+C RSE + +V Y++ +L +RN + K IG +AK +++L S
Sbjct: 114 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 170
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSA-------YVAPETKE 850
V D++ ++D K ++++ GLA Y + S+++ ++A E+ +
Sbjct: 171 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQ 228
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
++ T K D++ FG++L +L+T +P D
Sbjct: 229 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 258
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 15/153 (9%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR------NLSWERRRKVAIGIAK 789
K + HPNIV G +V EY+ L +L L RR +A +AK
Sbjct: 89 KRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAK 148
Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------Y 843
+ +LH + +P +V ++ ++VD K +++ GL+ S ++S + +
Sbjct: 149 GMNYLH-NRNPPIVHRNLKSPNLLVDKKYT--VKVCDFGLSRLKASTFLSSKSAAGTPEW 205
Query: 844 VAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
+APE + EK D+Y FG+IL +L T + P
Sbjct: 206 MAPEVLRDEPSNEKSDVYSFGVILWELATLQQP 238
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
G+ Y L ND + + + +N IT +VSQF +IM HPN++
Sbjct: 39 GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 95
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
L G+C RSE + +V Y++ +L +RN + K IG +AK +++L S
Sbjct: 96 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 152
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSA-------YVAPETKE 850
V D++ ++D K ++++ GLA Y + S+++ ++A E+ +
Sbjct: 153 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQ 210
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
++ T K D++ FG++L +L+T +P D
Sbjct: 211 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 240
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
G+ Y L ND + + + +N IT +VSQF +IM HPN++
Sbjct: 37 GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 93
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
L G+C RSE + +V Y++ +L +RN + K IG +AK +++L S
Sbjct: 94 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 150
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSA-------YVAPETKE 850
V D++ ++D K ++++ GLA Y + S+++ ++A E+ +
Sbjct: 151 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQ 208
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
++ T K D++ FG++L +L+T +P D
Sbjct: 209 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 238
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
G+ Y L ND + + + +N IT +VSQF +IM HPN++
Sbjct: 34 GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 90
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
L G+C RSE + +V Y++ +L +RN + K IG +AK +++L S
Sbjct: 91 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 147
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSA-------YVAPETKE 850
V D++ ++D K ++++ GLA Y + S+++ ++A E+ +
Sbjct: 148 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQ 205
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
++ T K D++ FG++L +L+T +P D
Sbjct: 206 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 235
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
G+ Y L ND + + + +N IT +VSQF +IM HPN++
Sbjct: 38 GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 94
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
L G+C RSE + +V Y++ +L +RN + K IG +AK +++L S
Sbjct: 95 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 151
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSA-------YVAPETKE 850
V D++ ++D K ++++ GLA Y + S+++ ++A E+ +
Sbjct: 152 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQ 209
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
++ T K D++ FG++L +L+T +P D
Sbjct: 210 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 239
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
G+ Y L ND + + + +N IT +VSQF +IM HPN++
Sbjct: 31 GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 87
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
L G+C RSE + +V Y++ +L +RN + K IG +AK +++L S
Sbjct: 88 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 144
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSA-------YVAPETKE 850
V D++ ++D K ++++ GLA Y + S+++ ++A E+ +
Sbjct: 145 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQ 202
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
++ T K D++ FG++L +L+T +P D
Sbjct: 203 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 232
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
G+ Y L ND + + + +N IT +VSQF +IM HPN++
Sbjct: 39 GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 95
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
L G+C RSE + +V Y++ +L +RN + K IG +AK +++L S
Sbjct: 96 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 152
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSA-------YVAPETKE 850
V D++ ++D K ++++ GLA Y + S+++ ++A E+ +
Sbjct: 153 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQ 210
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
++ T K D++ FG++L +L+T +P D
Sbjct: 211 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 240
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
G+ Y L ND + + + +N IT +VSQF +IM HPN++
Sbjct: 36 GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 92
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
L G+C RSE + +V Y++ +L +RN + K IG +AK +++L S
Sbjct: 93 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 149
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSA-------YVAPETKE 850
V D++ ++D K ++++ GLA Y + S+++ ++A E+ +
Sbjct: 150 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQ 207
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
++ T K D++ FG++L +L+T +P D
Sbjct: 208 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 237
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 67 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 126
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 127 HSKRVIHRDIKPENLLLGSAGE----LKIANFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 182
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 183 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 211
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 70 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 129
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 130 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEXIEG 185
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 186 RXHDEKVDLWSLGVLCYEFLVGKPPFEAN 214
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 68 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 127
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 128 HSKRVIHRDIKPENLLLGSAGE----LKIANFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 183
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 184 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 212
>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2: Se-Met Derivative
Length = 342
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 18/182 (9%)
Query: 706 ANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG 765
A + +F VK IID + + + ++G+ HPNI+ L V K Y+V E +G
Sbjct: 45 ATNXEFAVK-IIDKSKRDPTEEIEILLRYGQ---HPNIITLKDVYDDGKYVYVVTELXKG 100
Query: 766 KE-LSEVLRNLSWERRRKVAI--GIAKALRFLHFHCSPSVVAGDVSPGKVI-VDGKDEPH 821
E L ++LR + R A+ I K + +LH + VV D+ P ++ VD P
Sbjct: 101 GELLDKILRQKFFSEREASAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPE 157
Query: 822 -LRLSVPGLAYCTDSKS------INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGK 874
+R+ G A +++ ++ +VAPE E + DI+ G++L LTG
Sbjct: 158 SIRICDFGFAKQLRAENGLLXTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTXLTGY 217
Query: 875 SP 876
+P
Sbjct: 218 TP 219
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 65 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 125 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 180
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 209
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFL 794
+ H NIV + V + YLV EYIEG LSE + + LS + I ++
Sbjct: 68 LSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHA 127
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS-------AYVAPE 847
H +V D+ P +++D L++ G+A S+ + Y +PE
Sbjct: 128 H---DMRIVHRDIKPQNILIDSNKT--LKIFDFGIAKALSETSLTQTNHVLGTVQYFSPE 182
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESI 887
+ + E DIY G++L ++L G+ P + + V +I
Sbjct: 183 QAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAI 222
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 68 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 127
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 128 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 183
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 184 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 212
>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|B Chain B, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|C Chain C, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|D Chain D, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|E Chain E, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|F Chain F, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
Length = 285
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 17/154 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRK------VAIGIAK 789
K + HPNI+++ V Y+V E EG EL E R +S + R K VA + +
Sbjct: 75 KSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLE--RIVSAQARGKALSEGYVAELMKQ 132
Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLA--YCTDSKSINSSA--- 842
+ L + S VV D+ P ++ PH + + GLA + +D S N++
Sbjct: 133 MMNALAYFHSQHVVHKDLKPENILFQ-DTSPHSPIKIIDFGLAELFKSDEHSTNAAGTAL 191
Query: 843 YVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
Y+APE + +D+T K DI+ G+++ LLTG P
Sbjct: 192 YMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLP 224
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 70 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 129
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 130 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 185
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 186 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 214
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 111/245 (45%), Gaps = 38/245 (15%)
Query: 48 TFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIXX 107
CK +G C + + N+++ S+K ++ I S+I + ++L SN+LS +PS
Sbjct: 3 ALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPSNIPA--DTKKLDLQSNKLSS-LPSKA-- 56
Query: 108 XXXXXXXXXXXXXXXTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLD---LG 164
L++L +L L++N L +P G F LK L+ +
Sbjct: 57 --------------------FHRLTKLRLLYLNDNKLQT-LP--AGIFKELKNLETLWVT 93
Query: 165 GNVLVGEIPLSI-SNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKE 223
N L +P+ + + +L L NQL PR L L ++ LGYN L +PK
Sbjct: 94 DNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKG 151
Query: 224 IGD-LTSLNHLDLVYNNLTGQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSF 281
+ D LTSL L L YNN ++P +F L+ L+ L L N+L + L+ L
Sbjct: 152 VFDKLTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210
Query: 282 DLSDN 286
L +N
Sbjct: 211 QLQEN 215
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 7/164 (4%)
Query: 425 LDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSD--QLENLDLSENRFSGT 482
LD+ N LS + +T L++L L N LP + LE L +++N+
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQAL 100
Query: 483 IPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLG 542
F +L L +L++ RN+L P S KL L L N+L ++ L
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160
Query: 543 QLDLSENQLSGKIPQ-TLGRVASLVQVNISHNHFHGSLPSTGAF 585
+L L NQL ++P+ ++ L + + +N +P GAF
Sbjct: 161 ELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPE-GAF 201
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 6/162 (3%)
Query: 399 RRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSG 458
+++ LQ+N+LS S F RL + L ++ N L E+ +L+ L + N
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 459 KLPDSFGSDQLENL---DLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCK 515
LP DQL NL L N+ PR F L++L L + N+L
Sbjct: 100 -LPIGV-FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 516 KLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQ 557
L L L NNQL + ++ L L L NQL ++P+
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPE 198
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Query: 460 LPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVS 519
+P + +D + LDL N+ S ++F RL++L L ++ NKL K L +
Sbjct: 31 IPSNIPADT-KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET 89
Query: 520 LDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSL 579
L +++N+L ++ L +L L NQL P+ + L +++ +N SL
Sbjct: 90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SL 148
Query: 580 PSTGAF 585
P G F
Sbjct: 149 PK-GVF 153
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 76/200 (38%), Gaps = 26/200 (13%)
Query: 232 HLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGE 291
LDL N L+ +F L+ LR L+L NKL ++P I
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFK----------------- 82
Query: 292 IPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLT 351
+L+NLE L + N + L L+L NQ P LT
Sbjct: 83 ------ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136
Query: 352 VIDLSTNFLTGKIPETLCDS-GSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSG 410
+ L N L +P+ + D SL +L L++N L+ + L+ ++L NN+L
Sbjct: 137 YLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195
Query: 411 ELSSEFTRLPLVYFLDISGN 430
F L + L + N
Sbjct: 196 VPEGAFDSLEKLKMLQLQEN 215
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 81/204 (39%), Gaps = 6/204 (2%)
Query: 348 NNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNR 407
NN +D S+ LT IP + KL L SN L + LR + L +N+
Sbjct: 16 NNKNSVDCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72
Query: 408 LSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS- 466
L + F L + L ++ N L ++ +L L L N P F S
Sbjct: 73 LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132
Query: 467 DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPE-ELSSCKKLVSLDLSNN 525
+L L L N F +L+ L +L++ N+L +PE +L +L L NN
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNN 191
Query: 526 QLSGHIPASLSEMPVLGQLDLSEN 549
QL + + L L L EN
Sbjct: 192 QLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 69 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 128
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 129 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 184
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 185 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 213
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 65 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 125 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTELCGTLDYLPPEMIEG 180
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 209
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 82 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 141
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 142 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 197
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 198 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 226
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 91 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 150
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 151 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 206
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 207 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 235
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 53.1 bits (126), Expect = 8e-07, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 64 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 123
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 124 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 179
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 180 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 208
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 53.1 bits (126), Expect = 8e-07, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 62 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 121
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 122 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 177
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 178 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 206
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 53.1 bits (126), Expect = 8e-07, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 68 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 127
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 128 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 183
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 184 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 212
>pdb|3KK9|A Chain A, Camkii Substrate Complex B
Length = 282
Score = 53.1 bits (126), Expect = 8e-07, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 715 KIIDVNTITTSSF--WPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
KII+ ++ F ++ + + HPNIVRLH + E YLV++ + G EL E +
Sbjct: 36 KIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDI 95
Query: 773 RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLAY 831
+ + I + L + + S +V ++ P +++ K + ++L+ GLA
Sbjct: 96 VAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAI 155
Query: 832 -CTDSKSINSSA----YVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
DS++ + A Y++PE + ++ DI+ G+IL LL G P
Sbjct: 156 EVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPP 205
>pdb|3KK8|A Chain A, Camkii Substrate Complex A
Length = 284
Score = 53.1 bits (126), Expect = 8e-07, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 715 KIIDVNTITTSSF--WPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
KII+ ++ F ++ + + HPNIVRLH + E YLV++ + G EL E +
Sbjct: 37 KIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDI 96
Query: 773 RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLAY 831
+ + I + L + + S +V ++ P +++ K + ++L+ GLA
Sbjct: 97 VAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAI 156
Query: 832 -CTDSKSINSSA----YVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
DS++ + A Y++PE + ++ DI+ G+IL LL G P
Sbjct: 157 EVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPP 206
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 66 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 125
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 126 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSCHAPSSRRTTLSGTLDYLPPEMIEG 181
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 182 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 210
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 10/146 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK-ALRFLHF 796
+ HP +V+LH ++E YL+ +++ G +L L V +A+ AL H
Sbjct: 87 VNHPFVVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALGLDHL 146
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL---AYCTDSKSIN---SSAYVAPETKE 850
H S ++ D+ P +++D +E H++L+ GL A + K+ + + Y+APE
Sbjct: 147 H-SLGIIYRDLKPENILLD--EEGHIKLTDFGLSKEAIDHEKKAYSFCGTVEYMAPEVVN 203
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
+ + D + +G+++ ++LTG P
Sbjct: 204 RQGHSHSADWWSYGVLMFEMLTGSLP 229
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 52.8 bits (125), Expect = 9e-07, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 65 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 125 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTXLCGTLDYLPPEMIEG 180
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 209
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 65 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS------AYVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 125 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEG 180
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 209
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 66 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 125
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S Y+ PE E
Sbjct: 126 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRDTLCGTLDYLPPEMIEG 181
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 182 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 210
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 66 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 125
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS------AYVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 126 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEG 181
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 182 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 210
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 70 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 129
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS------AYVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 130 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEG 185
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 186 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 214
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 65 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS------AYVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 125 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEG 180
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 209
>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid-
Regulated Kinase 1 In Complex With Amp-Pnp
pdb|3HDM|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 1
pdb|3HDN|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 2
Length = 373
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
K + HP +V LH ++ Y V +YI G EL L R R R A IA AL
Sbjct: 94 KNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALG 153
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA--------YV 844
+LH S ++V D+ P +++D + H+ L+ GL C ++ NS+ Y+
Sbjct: 154 YLH---SLNIVYRDLKPENILLDSQG--HIVLTDFGL--CKENIEHNSTTSTFCGTPEYL 206
Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSP 876
APE + D + G +L ++L G P
Sbjct: 207 APEVLHKQPYDRTVDWWCLGAVLYEMLYGLPP 238
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 104/244 (42%), Gaps = 36/244 (14%)
Query: 396 KSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLS--GRIGEQKWEMTSLQMLNLAG 453
KSL+R+ +N+ G SE LP + FLD+S N LS G + + TSL+ L+L+
Sbjct: 325 KSLKRLTFTSNK-GGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382
Query: 454 NNFSGKLPDSFGSDQLENLDLSENRF--------------------SGTIPRS-----FG 488
N + G +QLE+LD + S T R F
Sbjct: 383 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442
Query: 489 RLSELMQLKISRNKLFGD-IPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLS 547
LS L LK++ N + +P+ + + L LDLS QL P + + + L L+++
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502
Query: 548 ENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPST---GAFLAINATAVAGNDLCGGDST 604
NQL R+ SL ++ + N + S P +L N+ G+ C G
Sbjct: 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG--- 559
Query: 605 SGLP 608
SG P
Sbjct: 560 SGKP 563
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 90/221 (40%), Gaps = 20/221 (9%)
Query: 151 EIGSFSGLKVLDL---------GGNVLVGEIPLSISNITSLQIFTLASNQL--IGSIPRE 199
+ G F LK+ L GGN S ++ SL+ L+ N L G +
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAF------SEVDLPSLEFLDLSRNGLSFKGCCSQS 368
Query: 200 IGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS-FGNLSNLRYLF 258
+LK++ L +N + +G L L HLD ++NL S F +L NL YL
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427
Query: 259 LYQNKLTGSIPKSILGLKSLVSFDLSDN-YLSGEIPEEVIQLQNLEILHLFSNNFTGKIP 317
+ + GL SL ++ N + +P+ +L+NL L L P
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
Query: 318 SSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTN 358
++ S+ LQVL + SNQ + +L I L TN
Sbjct: 488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 131 LSRLEILDLSNNMLSGK-IPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLAS 189
LS LE+L ++ N +P+ L LDL L P + ++++SLQ+ +AS
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 190 NQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPK 222
NQL S+P I +L +L+ I+L N P+
Sbjct: 504 NQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 88/209 (42%), Gaps = 7/209 (3%)
Query: 202 QLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLT--GQIPPSFGNLSNLRYLFL 259
+L++LK + N G E+ DL SL LDL N L+ G S ++L+YL L
Sbjct: 323 KLKSLKRLTFTSNK-GGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Query: 260 YQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEV-IQLQNLEILHLFSNNFTGKIPS 318
N + ++ + LGL+ L D + L V + L+NL L + +
Sbjct: 381 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 319 SLASMPKLQVLQLWSNQFSGE-IPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKL 377
+ L+VL++ N F +P + NLT +DLS L P SL L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 378 ILFSNSLEGKIPNSLSTCKSLRRVRLQNN 406
+ SN L+ SL+++ L N
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Query: 137 LDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSI 196
LDLS N L SF L+VLDL + + +++ L L N +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 197 PREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG-QIPPSFGNLSNLR 255
L +L+ + NL+ IG L +L L++ +N + ++P F NL+NL
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 256 YLFLYQNKL 264
+L L NK+
Sbjct: 153 HLDLSSNKI 161
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 459 KLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLV 518
K+PD+ +NLDLS N SF EL L +SR ++ S L
Sbjct: 21 KIPDNLPFST-KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79
Query: 519 SLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHN 573
+L L+ N + + S + L +L E L+ +G + +L ++N++HN
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 67 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 126
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S Y+ PE E
Sbjct: 127 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRXXLCGTLDYLPPEMIEG 182
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 183 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 211
>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
pdb|2BDW|B Chain B, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
Length = 362
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 104/233 (44%), Gaps = 11/233 (4%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWP--DVSQFGKLIMHPNIVRLHGV 749
GK S + ++F K II+ ++ F ++ + + HPNIVRLH
Sbjct: 38 GKGAFSVVRRCVHKTTGLEFAAK-IINTKKLSARDFQKLEREARICRKLQHPNIVRLHDS 96
Query: 750 CRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSP 809
+ E YLV++ + G EL E + + + I + L + + S +V ++ P
Sbjct: 97 IQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKP 156
Query: 810 GKVIVDGKDE-PHLRLSVPGLAY-CTDSKSINSSA----YVAPETKESKDITEKGDIYGF 863
+++ K + ++L+ GLA DS++ + A Y++PE + ++ DI+
Sbjct: 157 ENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWAC 216
Query: 864 GLILIDLLTGKSPA-DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI 915
G+IL LL G P D D + ++ Y Y DT V P + + S+
Sbjct: 217 GVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDT-VTPEAKSLIDSM 268
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 65 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS------INSSAYVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 125 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRXXLCGTLDYLPPEMIEG 180
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 209
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 68 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 127
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS------INSSAYVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 128 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRXXLCGTLDYLPPEMIEG 183
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 184 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 212
>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant
Length = 334
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
K I HPN++ LH V ++ L+ E + G EL + L +L+ E + I +
Sbjct: 69 KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
+LH S + D+ P +++ ++ P R+ + GLA+ D + A+VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPAFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
PE + + + D++ G+I LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 68 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 127
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS------AYVAPETKES 851
S V+ D+ P +++ E L + + + S Y+ PE E
Sbjct: 128 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRDDLCGTLDYLPPEMIEG 183
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 184 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 212
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 74/167 (44%), Gaps = 39/167 (23%)
Query: 131 LSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASN 190
LS L+I ++S N I + L L L GN L E+P I N+++L++ L+ N
Sbjct: 231 LSNLQIFNISAN---------IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN 280
Query: 191 QLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGN 250
+L S+P E+G LK+ Y ++N+ +P FGN
Sbjct: 281 RLT-SLPAELGSCFQLKYFYF-------------------------FDNMVTTLPWEFGN 314
Query: 251 LSNLRYLFLYQNKLTGSIPKSILGLKSLVS--FDLSDNYLSGEIPEE 295
L NL++L + N L K IL KS+ F L DN +P E
Sbjct: 315 LCNLQFLGVEGNPLEKQFLK-ILTEKSVTGLIFYLRDNRPEIPLPHE 360
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 125 PVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQI 184
P I +LS L +LDLS+N L+ +P E+GS LK N +V +P N+ +LQ
Sbjct: 263 PAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQF 320
Query: 185 FTLASNQL 192
+ N L
Sbjct: 321 LGVEGNPL 328
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 208 WIYLGYNNLS-GEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTG 266
W L +NL I I L L L N+LT ++P NLSNLR L L N+LT
Sbjct: 226 WHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT- 283
Query: 267 SIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEIL 305
S+P + L F DN ++ +P E L NL+ L
Sbjct: 284 SLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFL 321
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 91 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 150
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS------AYVAPETKES 851
S V+ D+ P +++ E L + + + S Y+ PE E
Sbjct: 151 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRDDLCGTLDYLPPEMIEG 206
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ EK D++ G++ + L GK P +A+
Sbjct: 207 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 235
>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|C Chain C, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|D Chain D, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|E Chain E, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|F Chain F, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|G Chain G, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|H Chain H, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
Length = 328
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 24/183 (13%)
Query: 712 VVKKIID---VNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL 768
V KIID +N + + +V + K++ HPNIV+L V +EK YLV EY G E+
Sbjct: 43 VAVKIIDKTQLNPTSLQKLFREV-RIMKILNHPNIVKLFEVIETEKTLYLVMEYASGGEV 101
Query: 769 SEVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRL 824
+ L R E R K I A+++ H +V D+ +++DG + +
Sbjct: 102 FDYLVAHGRMKEKEARAKFR-QIVSAVQYCH---QKYIVHRDLKAENLLLDGD----MNI 153
Query: 825 SVPGLAYCTDSKSIN-------SSAYVAPETKESKDIT-EKGDIYGFGLILIDLLTGKSP 876
+ + + N S Y APE + K + D++ G+IL L++G P
Sbjct: 154 KIADFGFSNEFTVGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLP 213
Query: 877 ADA 879
D
Sbjct: 214 FDG 216
>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex
pdb|3KL8|C Chain C, Camkiintide Inhibitor Complex
pdb|3KL8|E Chain E, Camkiintide Inhibitor Complex
pdb|3KL8|G Chain G, Camkiintide Inhibitor Complex
pdb|3KL8|I Chain I, Camkiintide Inhibitor Complex
Length = 269
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 9/193 (4%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWP--DVSQFGKLIMHPNIVRLHGV 749
GK S + ++F K II+ ++ F ++ + + HPNIVRLH
Sbjct: 15 GKGAFSVVRRCVHKTTGLEFAAK-IINTKKLSARDFQKLEREARICRKLQHPNIVRLHDS 73
Query: 750 CRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSP 809
+ E YLV++ + G EL E + + + I + L + + S +V ++ P
Sbjct: 74 IQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKP 133
Query: 810 GKVIVDGKDE-PHLRLSVPGLAY-CTDSKSINSSA----YVAPETKESKDITEKGDIYGF 863
+++ K + ++L+ GLA DS++ + A Y++PE + ++ DI+
Sbjct: 134 ENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWAC 193
Query: 864 GLILIDLLTGKSP 876
G+IL LL G P
Sbjct: 194 GVILYILLVGYPP 206
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 125/281 (44%), Gaps = 65/281 (23%)
Query: 57 CQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIXXXXXXXXXXX 116
+N T++N +ELS+ IS S++ L ++ +N SSNQ+
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQV------------------- 163
Query: 117 XXXXXXTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSI 176
T P+ +L+ LE LD+S+N +S + + L+ L N + PL I
Sbjct: 164 ------TDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI 215
Query: 177 SNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLV 236
+T+L +L NQL ++IG L LT+L LDL
Sbjct: 216 --LTNLDELSLNGNQL-----KDIGTL---------------------ASLTNLTDLDLA 247
Query: 237 YNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEV 296
N ++ P L+ L L L N+++ P + GL +L + +L++N L P +
Sbjct: 248 NNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--I 301
Query: 297 IQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFS 337
L+NL L L+ NN + P ++S+ KLQ L ++N+ S
Sbjct: 302 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 340
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 10/142 (7%)
Query: 128 IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTL 187
+ SL+ L LDL+NN +S P + + L L LG N + PL + +T+L L
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL--AGLTALTNLEL 290
Query: 188 ASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS 247
NQL P I L+NL ++ L +NN+S P + LT L L YNN + S
Sbjct: 291 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDV-SS 344
Query: 248 FGNLSNLRYLFLYQNKLTGSIP 269
NL+N+ +L N+++ P
Sbjct: 345 LANLTNINWLSAGHNQISDLTP 366
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 111/256 (43%), Gaps = 41/256 (16%)
Query: 348 NNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNR 407
NNLT I+ S N LT P L + L +++ +N + P L+ +L + L NN+
Sbjct: 63 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 408 LSGELSSEFTRLPLVYFLDISGN---DLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSF 464
++ L + L++S N D+S G +TSLQ LN + N + P +
Sbjct: 119 ITD--IDPLKNLTNLNRLELSSNTISDISALSG-----LTSLQQLNFSSNQVTDLKPLA- 170
Query: 465 GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIP-------EELS----- 512
LE LD+S N+ S +L+ L L + N++ P +ELS
Sbjct: 171 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 513 --------SCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVAS 564
S L LDL+NNQ+S P LS + L +L L NQ+S P L + +
Sbjct: 229 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 284
Query: 565 LVQVNISHNHFHGSLP 580
L + ++ N P
Sbjct: 285 LTNLELNENQLEDISP 300
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 96/219 (43%), Gaps = 23/219 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKI--IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGV 749
GK K + ++ VK I TS+ +V KL HPNI++L +
Sbjct: 31 GKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLD-HPNIMKLFEI 89
Query: 750 CRSEKAAYLVYEYIEGKEL-SEVLRNLSWERRRKVAI--GIAKALRFLHFHCSPSVVAGD 806
+ Y+V E G EL E+++ + I + + ++H H ++V D
Sbjct: 90 LEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH---NIVHRD 146
Query: 807 VSPGKVIVDGKDEP-HLRLSVPGLAYCTDSKS-----INSSAYVAPETKESKDITEKGDI 860
+ P ++++ K++ +++ GL+ C + I ++ Y+APE EK D+
Sbjct: 147 LKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGT-YDEKCDV 205
Query: 861 YGFGLILIDLLTGKSPADADFGVHE----SIVEWARYCY 895
+ G+IL LL+G P +G +E VE +Y +
Sbjct: 206 WSAGVILYILLSGTPPF---YGKNEYDILKRVETGKYAF 241
>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FG9|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FGB|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I Apo Form
Length = 320
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 18/186 (9%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSWER-RRKVAIGIAKALRFL 794
I HPNIV L + S YL+ + + G EL + V + ER ++ + A+++L
Sbjct: 73 IKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYL 132
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLAYCTDSKSINSSA-----YVAPET 848
H +V D+ P ++ DE + +S GL+ D S+ S+A YVAPE
Sbjct: 133 H---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEV 189
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVDP 906
K ++ D + G+I LL G P + D + E I++ A Y + + D D
Sbjct: 190 LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILK-AEYEFDSPYWDDISDS 248
Query: 907 ---FIR 909
FIR
Sbjct: 249 AKDFIR 254
>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
pdb|4FG8|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
Length = 315
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 18/186 (9%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSWER-RRKVAIGIAKALRFL 794
I HPNIV L + S YL+ + + G EL + V + ER ++ + A+++L
Sbjct: 73 IKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYL 132
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLAYCTDSKSINSSA-----YVAPET 848
H +V D+ P ++ DE + +S GL+ D S+ S+A YVAPE
Sbjct: 133 H---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEV 189
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVDP 906
K ++ D + G+I LL G P + D + E I++ A Y + + D D
Sbjct: 190 LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILK-AEYEFDSPYWDDISDS 248
Query: 907 ---FIR 909
FIR
Sbjct: 249 AKDFIR 254
>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-293 In Complex With Atp
Length = 293
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 18/186 (9%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSWER-RRKVAIGIAKALRFL 794
I HPNIV L + S YL+ + + G EL + V + ER ++ + A+++L
Sbjct: 73 IKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYL 132
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLAYCTDSKSINSSA-----YVAPET 848
H +V D+ P ++ DE + +S GL+ D S+ S+A YVAPE
Sbjct: 133 H---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEV 189
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVDP 906
K ++ D + G+I LL G P + D + E I++ A Y + + D D
Sbjct: 190 LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILK-AEYEFDSPYWDDISDS 248
Query: 907 ---FIR 909
FIR
Sbjct: 249 AKDFIR 254
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 113/429 (26%), Positives = 168/429 (39%), Gaps = 90/429 (20%)
Query: 132 SRLEILDLSNNMLSGKIP---EEIGSFSGLKVLDLGGNV-LVGEIPLSISNITSLQIFTL 187
S L LDLS+N L P + IG L + + N L ++ +SN TS+Q +L
Sbjct: 171 SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSN-TSIQNLSL 229
Query: 188 ASNQLIGSIPREIGQLR--NLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIP 245
A+NQL+ + L+ NL + L YNNL L SL +L L YNN+ P
Sbjct: 230 ANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSP 289
Query: 246 PSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEIL 305
SF LSNLRYL L + S+ SL S D++ L+ LE L
Sbjct: 290 RSFYGLSNLRYLSLKRAFTKQSV--------SLASHPNIDDF-------SFQWLKYLEYL 334
Query: 306 HLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIP 365
++ NN IPS+ SN F+G + +L + LS F +
Sbjct: 335 NMDDNN----IPSTK------------SNTFTGLV--------SLKYLSLSKTFTS---- 366
Query: 366 ETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFL 425
L +N + +S L + L N +S + F+ L + L
Sbjct: 367 -----------LQTLTNETFVSLAHS-----PLLTLNLTKNHISKIANGTFSWLGQLRIL 410
Query: 426 DISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPR 485
D+ N++ ++ Q+W G + + LS N++
Sbjct: 411 DLGLNEIEQKLSGQEWR----------------------GLRNIFEIYLSYNKYLQLSTS 448
Query: 486 SFGRLSELMQLKISRNKLFG-DI-PEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQ 543
SF + L +L + R L DI P + L LDLSNN ++ L + L
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEI 508
Query: 544 LDLSENQLS 552
LD N L+
Sbjct: 509 LDFQHNNLA 517
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 122/328 (37%), Gaps = 51/328 (15%)
Query: 177 SNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLV 236
SNIT + L NQL P + L + G+N++S P+ L L L+L
Sbjct: 25 SNIT---VLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQ 81
Query: 237 YNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEV 296
+N L+ +F +NL L L N + K+L+ DLS N LS
Sbjct: 82 HNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTG 141
Query: 297 IQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLS 356
+Q + K ++L L S + S+L K +DLS
Sbjct: 142 VQ----------------LENLQELLLAKNKILALRSEELEFLGNSSLRK------LDLS 179
Query: 357 TNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLS---TCKSLRRVRLQNNRLSGELS 413
+N L P G LF L+L + L + L + S++ + L NN+L
Sbjct: 180 SNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSE 239
Query: 414 SEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS-DQLENL 472
S F+ L KW T+L L+L+ NN SF L L
Sbjct: 240 STFSGL--------------------KW--TNLTQLDLSYNNLHDVGNGSFSYLPSLRYL 277
Query: 473 DLSENRFSGTIPRSFGRLSELMQLKISR 500
L N PRSF LS L L + R
Sbjct: 278 SLEYNNIQRLSPRSFYGLSNLRYLSLKR 305
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 107/443 (24%), Positives = 177/443 (39%), Gaps = 22/443 (4%)
Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIF 185
+P S + +L+L++N L P +S L +LD G N + P + L++
Sbjct: 19 IPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVL 78
Query: 186 TLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIP 245
L N+L + NL + L N++ + +L LDL +N L+
Sbjct: 79 NLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKL 138
Query: 246 PSFGNLSNLRYLFLYQNKLTG--SIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLE 303
+ L NL+ L L +NK+ S LG SL DLS N L P + L
Sbjct: 139 GTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLF 198
Query: 304 ILHLFSNNFTGKIPSSLA---SMPKLQVLQLWSNQFSGEIPSNLG--KQNNLTVIDLSTN 358
L L + + L S +Q L L +NQ S K NLT +DLS N
Sbjct: 199 ALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYN 258
Query: 359 FLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQN--NRLSGELSSE- 415
L + SL L L N+++ P S +LR + L+ + S L+S
Sbjct: 259 NLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHP 318
Query: 416 ------FTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAG-----NNFSGKLPDSF 464
F L + +L++ N++ + SL+ L+L+ + + S
Sbjct: 319 NIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSL 378
Query: 465 GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIP-EELSSCKKLVSLDLS 523
L L+L++N S +F L +L L + N++ + +E + + + LS
Sbjct: 379 AHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLS 438
Query: 524 NNQLSGHIPASLSEMPVLGQLDL 546
N+ +S + +P L +L L
Sbjct: 439 YNKYLQLSTSSFALVPSLQRLML 461
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 67/151 (44%), Gaps = 20/151 (13%)
Query: 124 GPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLV---------GEIPL 174
P P L L ILDLSNN ++ + + L++LD N L G +
Sbjct: 472 SPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNF 531
Query: 175 SISNITSLQIFTLASNQLIGSIPREIGQLRN---LKWIYLGYNNLSGEIPKEIGDLTSLN 231
+ ++ L I L SN L IP +G +N LK I LG NNL+ P D TSL
Sbjct: 532 -LKGLSHLHILNLESNGL-DEIP--VGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLR 587
Query: 232 HLDLVYNNLTG----QIPPSFGNLSNLRYLF 258
L+L N +T P F NL++L F
Sbjct: 588 SLNLQKNLITSVEKDVFGPPFQNLNSLDMRF 618
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 22/200 (11%)
Query: 154 SFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGY 213
+F+ L+ L V + PL N+T I +A+ +GQLR L LG
Sbjct: 363 TFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTF-----SWLGQLRILD---LGL 414
Query: 214 NNLSGEIP-KEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGS--IPK 270
N + ++ +E L ++ + L YN SF + +L+ L L + L P
Sbjct: 415 NEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPS 474
Query: 271 SILGLKSLVSFDLSDNYLSGEIPEEVIQ-LQNLEILHLFSNNFT--------GKIPSSLA 321
L++L DLS+N ++ I E++++ L+NLEIL NN G + L
Sbjct: 475 PFRPLRNLTILDLSNNNIAN-INEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLK 533
Query: 322 SMPKLQVLQLWSNQFSGEIP 341
+ L +L L SN EIP
Sbjct: 534 GLSHLHILNLESNGL-DEIP 552
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%)
Query: 491 SELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQ 550
S + L ++ N+L P + +L LD N +S P +P+L L+L N+
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 551 LSGKIPQTLGRVASLVQVNISHNHFH 576
LS QT +L ++++ N H
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIH 110
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 85/186 (45%), Gaps = 10/186 (5%)
Query: 397 SLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLS--GRIGEQKWEMTSLQMLNLAGN 454
S R+ L++N+L F +L + L +S N LS G + + TSL+ L+L+ N
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
Query: 455 NFSGKLPDSFGSDQLENLDLSENRFSGTIPRS-FGRLSELMQLKISRNKL---FGDIPEE 510
+ G +QLE+LD + S F L L+ L IS F I
Sbjct: 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Query: 511 LSSCKKLVSLDLSNNQLS-GHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVN 569
LSS L L ++ N +P +E+ L LDLS+ QL P ++SL +N
Sbjct: 149 LSS---LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 570 ISHNHF 575
+SHN+F
Sbjct: 206 MSHNNF 211
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 83/193 (43%), Gaps = 6/193 (3%)
Query: 179 ITSLQIFTLASNQL--IGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLV 236
+T L +L+SN L G + +LK++ L +N + +G L L HLD
Sbjct: 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQ 109
Query: 237 YNNLTGQIPPS-FGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDN-YLSGEIPE 294
++NL S F +L NL YL + + GL SL ++ N + +P+
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169
Query: 295 EVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVID 354
+L+NL L L P++ S+ LQVL + N F N+L V+D
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229
Query: 355 LSTN-FLTGKIPE 366
S N +T K E
Sbjct: 230 YSLNHIMTSKKQE 242
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 88/213 (41%), Gaps = 15/213 (7%)
Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNI--TSLQ 183
VP G S L+L +N L + L L L N L + S S+ TSL+
Sbjct: 22 VPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81
Query: 184 IFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGD------LTSLNHLDLVY 237
L+ N +I +G L L+ + ++NL K++ + L +L +LD+ +
Sbjct: 82 YLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNL-----KQMSEFSVFLSLRNLIYLDISH 135
Query: 238 NNLTGQIPPSFGNLSNLRYLFLYQNKLTGS-IPKSILGLKSLVSFDLSDNYLSGEIPEEV 296
+ F LS+L L + N + +P L++L DLS L P
Sbjct: 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195
Query: 297 IQLQNLEILHLFSNNFTGKIPSSLASMPKLQVL 329
L +L++L++ NNF + LQVL
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228
>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YA9|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YAA|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAA|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAB|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
pdb|2YAB|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
Length = 361
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
+ ++HPNI+ LH V + L+ E + G EL + L +LS E I +
Sbjct: 70 RQVLHPNIITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVN 129
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKD--EPHLRLSVPGLAYCTDS----KSI-NSSAYVA 845
+LH + + D+ P +++ K+ PH++L GLA+ + K+I + +VA
Sbjct: 130 YLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVA 186
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
PE + + + D++ G+I LL+G SP
Sbjct: 187 PEIVNYEPLGLEADMWSIGVITYILLSGASP 217
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 18/179 (10%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K+I +++ F+ + KL HP +V+ +GVC E Y+V EYI L
Sbjct: 35 VAVKMIKEGSMSEDEFFQEAQTMMKL-SHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNY 93
Query: 772 LRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
LR+ L + ++ + + + FL H + D++ +VD + +++S
Sbjct: 94 LRSHGKGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVD--RDLCVKVSDF 148
Query: 828 GLA-YCTDSKSINSSA------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPAD 878
G+ Y D + ++S + APE + K D++ FG+++ ++ + GK P D
Sbjct: 149 GMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYD 207
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFG--KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS 769
V KIID + +SS + K++ HPNIV+L V +EK YLV EY G E+
Sbjct: 42 VAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVF 101
Query: 770 EVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS 825
+ L R E R K I A+++ H +V D+ +++D + +
Sbjct: 102 DYLVAHGRMKEKEARAKFR-QIVSAVQYCH---QKFIVHRDLKAENLLLDAD----MNIK 153
Query: 826 VPGLAYCTDSKSIN-------SSAYVAPETKESKDIT-EKGDIYGFGLILIDLLTGKSPA 877
+ + + N S Y APE + K + D++ G+IL L++G P
Sbjct: 154 IADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF 213
Query: 878 DA 879
D
Sbjct: 214 DG 215
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFG--KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS 769
V KIID + +SS + K++ HPNIV+L V +EK YLV EY G E+
Sbjct: 42 VAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVF 101
Query: 770 EVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS 825
+ L R E R K I A+++ H +V D+ +++D + +
Sbjct: 102 DYLVAHGRMKEKEARAKFR-QIVSAVQYCH---QKFIVHRDLKAENLLLDAD----MNIK 153
Query: 826 VPGLAYCTDSKSIN-------SSAYVAPETKESKDIT-EKGDIYGFGLILIDLLTGKSPA 877
+ + + N S Y APE + K + D++ G+IL L++G P
Sbjct: 154 IADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF 213
Query: 878 DA 879
D
Sbjct: 214 DG 215
>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment
pdb|3H4J|A Chain A, Crystal Structure Of Pombe Ampk Kdaid Fragment
Length = 336
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 24/214 (11%)
Query: 679 IISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQ---FG 735
II T E S GK +++ YK + Q V K I + S V + +
Sbjct: 12 IIRETLGEG--SFGKVKLATHYKTQ------QKVALKFISRQLLKKSDMHMRVEREISYL 63
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL--RNLSWERRRKVAIGIAKALRF 793
KL+ HP+I++L+ V + +V EY G+ ++ + ++ + R+ I A+ +
Sbjct: 64 KLLRHPHIIKLYDVITTPTDIVMVIEYAGGELFDYIVEKKRMTEDEGRRFFQQIICAIEY 123
Query: 794 LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA----YVAPET 848
H H +V D+ P +++D D +++++ GL+ TD + +S Y APE
Sbjct: 124 CHRH---KIVHRDLKPENLLLD--DNLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEV 178
Query: 849 KESKDIT-EKGDIYGFGLILIDLLTGKSPADADF 881
K + D++ G++L +L G+ P D +F
Sbjct: 179 INGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEF 212
>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRB|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRG|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRH|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRM|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRN|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRO|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2C3J|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3K|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3L|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2CGU|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGV|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGW|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGX|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|3NLB|A Chain A, Novel Kinase Profile Highlights The Temporal Basis Of
Context Dependent Checkpoint Pathways To Cell Death
Length = 297
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
K++ H N+V+ +G R YL EY G EL + R + IG+ + A RF
Sbjct: 60 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 110
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
H + + D+ P +++D +D +L++S GLA Y + +N
Sbjct: 111 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 168
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
+ YVAPE + ++ E D++ G++L +L G+ P D +S E++ +
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 225
Query: 898 CHLDTW 903
+L+ W
Sbjct: 226 TYLNPW 231
>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint
Kinase Chk1
pdb|1NVQ|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1UCN-01
pdb|1NVR|A Chain A, The Complex Structure Of Checkpoint Kinase
Chk1STAUROSPORINE
pdb|1NVS|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1SB218078
pdb|2WMQ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMR|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMS|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMT|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMU|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMV|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMX|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMW|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEY|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XF0|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEZ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2X8D|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2X8I|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YM3|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM4|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM5|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM6|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM7|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM8|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YDI|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 289
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
K++ H N+V+ +G R YL EY G EL + R + IG+ + A RF
Sbjct: 60 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 110
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
H + + D+ P +++D +D +L++S GLA Y + +N
Sbjct: 111 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 168
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
+ YVAPE + ++ E D++ G++L +L G+ P D +S E++ +
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 225
Query: 898 CHLDTW 903
+L+ W
Sbjct: 226 TYLNPW 231
>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
K++ H N+V+ +G R YL EY G EL + R + IG+ + A RF
Sbjct: 59 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
H + + D+ P +++D +D +L++S GLA Y + +N
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMX 167
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
+ YVAPE + ++ E D++ G++L +L G+ P D +S E++ +
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 224
Query: 898 CHLDTW 903
+L+ W
Sbjct: 225 TYLNPW 230
>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
K++ H N+V+ +G R YL EY G EL + R + IG+ + A RF
Sbjct: 59 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
H + + D+ P +++D +D +L++S GLA Y + +N
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 167
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
+ YVAPE + ++ E D++ G++L +L G+ P D +S E++ +
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 224
Query: 898 CHLDTW 903
+L+ W
Sbjct: 225 TYLNPW 230
>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1
pdb|4FTA|A Chain A, Crystal Structure Of The Chk1
pdb|4FTC|A Chain A, Crystal Structure Of The Chk1
pdb|4FTN|A Chain A, Crystal Structure Of The Chk1
pdb|4FTQ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
K++ H N+V+ +G R YL EY G EL + R + IG+ + A RF
Sbjct: 59 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
H + + D+ P +++D +D +L++S GLA Y + +N
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMX 167
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
+ YVAPE + ++ E D++ G++L +L G+ P D +S E++ +
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 224
Query: 898 CHLDTW 903
+L+ W
Sbjct: 225 TYLNPW 230
>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
K++ H N+V+ +G R YL EY G EL + R + IG+ + A RF
Sbjct: 59 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
H + + D+ P +++D +D +L++S GLA Y + +N
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 167
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
+ YVAPE + ++ E D++ G++L +L G+ P D +S E++ +
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 224
Query: 898 CHLDTW 903
+L+ W
Sbjct: 225 TYLNPW 230
>pdb|4FST|A Chain A, Crystal Structure Of The Chk1
Length = 269
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
K++ H N+V+ +G R YL EY G EL + R + IG+ + A RF
Sbjct: 59 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
H + + D+ P +++D +D +L++S GLA Y + +N
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMX 167
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
+ YVAPE + ++ E D++ G++L +L G+ P D +S E++ +
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 224
Query: 898 CHLDTW 903
+L+ W
Sbjct: 225 TYLNPW 230
>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1
Length = 278
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
K++ H N+V+ +G R YL EY G EL + R + IG+ + A RF
Sbjct: 58 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 108
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
H + + D+ P +++D +D +L++S GLA Y + +N
Sbjct: 109 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 166
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
+ YVAPE + ++ E D++ G++L +L G+ P D +S E++ +
Sbjct: 167 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 223
Query: 898 CHLDTW 903
+L+ W
Sbjct: 224 TYLNPW 229
>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1
pdb|4FSQ|A Chain A, Crystal Structure Of The Chk1
pdb|4FSR|A Chain A, Crystal Structure Of The Chk1
pdb|4FT0|A Chain A, Crystal Structure Of The Chk1
pdb|4FT5|A Chain A, Crystal Structure Of The Chk1
pdb|4FT7|A Chain A, Crystal Structure Of The Chk1
pdb|4FT9|A Chain A, Crystal Structure Of The Chk1
pdb|4FTI|A Chain A, Crystal Structure Of The Chk1
pdb|4FTJ|A Chain A, Crystal Structure Of The Chk1
pdb|4FTK|A Chain A, Crystal Structure Of The Chk1
pdb|4FTL|A Chain A, Crystal Structure Of The Chk1
pdb|4FTM|A Chain A, Crystal Structure Of The Chk1
pdb|4FTO|A Chain A, Crystal Structure Of The Chk1
pdb|4FTR|A Chain A, Crystal Structure Of The Chk1
pdb|4FTT|A Chain A, Crystal Structure Of The Chk1
pdb|4FTU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
K++ H N+V+ +G R YL EY G EL + R + IG+ + A RF
Sbjct: 59 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
H + + D+ P +++D +D +L++S GLA Y + +N
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 167
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
+ YVAPE + ++ E D++ G++L +L G+ P D +S E++ +
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 224
Query: 898 CHLDTW 903
+L+ W
Sbjct: 225 TYLNPW 230
>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
pdb|2YDJ|B Chain B, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
K++ H N+V+ +G R YL EY G EL + R + IG+ + A RF
Sbjct: 60 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 110
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
H + + D+ P +++D +D +L++S GLA Y + +N
Sbjct: 111 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMX 168
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
+ YVAPE + ++ E D++ G++L +L G+ P D +S E++ +
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 225
Query: 898 CHLDTW 903
+L+ W
Sbjct: 226 TYLNPW 231
>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human
Chk1 Kinase Domain
pdb|3OT8|A Chain A, X-Ray Crystal Structure Of Compound 17r Bound To Human
Chk1 Kinase Domain
pdb|3PA3|A Chain A, X-Ray Crystal Structure Of Compound 70 Bound To Human Chk1
Kinase Domain
pdb|3PA4|A Chain A, X-Ray Crystal Structure Of Compound 2a Bound To Human Chk1
Kinase Domain
pdb|3PA5|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
pdb|3U9N|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
Length = 273
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
K++ H N+V+ +G R YL EY G EL + R + IG+ + A RF
Sbjct: 59 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
H + + D+ P +++D +D +L++S GLA Y + +N
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 167
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
+ YVAPE + ++ E D++ G++L +L G+ P D +S E++ +
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 224
Query: 898 CHLDTW 903
+L+ W
Sbjct: 225 TYLNPW 230
>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YER|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YEX|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YDK|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
K++ H N+V+ +G R YL EY G EL + R + IG+ + A RF
Sbjct: 60 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 110
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
H + + D+ P +++D +D +L++S GLA Y + +N
Sbjct: 111 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 168
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
+ YVAPE + ++ E D++ G++L +L G+ P D +S E++ +
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 225
Query: 898 CHLDTW 903
+L+ W
Sbjct: 226 TYLNPW 231
>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
pdb|3JVS|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
Length = 271
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
K++ H N+V+ +G R YL EY G EL + R + IG+ + A RF
Sbjct: 59 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
H + + D+ P +++D +D +L++S GLA Y + +N
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 167
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
+ YVAPE + ++ E D++ G++L +L G+ P D +S E++ +
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 224
Query: 898 CHLDTW 903
+L+ W
Sbjct: 225 TYLNPW 230
>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017
pdb|2E9V|B Chain B, Structure Of H-Chk1 Complexed With A859017
Length = 268
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
K++ H N+V+ +G R YL EY G EL + R + IG+ + A RF
Sbjct: 59 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
H + + D+ P +++D +D +L++S GLA Y + +N
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 167
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
+ YVAPE + ++ E D++ G++L +L G+ P D +S E++ +
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 224
Query: 898 CHLDTW 903
+L+ W
Sbjct: 225 TYLNPW 230
>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994
pdb|2YWP|A Chain A, Crystal Structure Of Chk1 With A Urea Inhibitor
pdb|2E9N|A Chain A, Structure Of H-chk1 Complexed With A767085
pdb|2E9O|A Chain A, Structure Of H-Chk1 Complexed With Aa582939
pdb|2E9P|A Chain A, Structure Of H-Chk1 Complexed With A771129
pdb|2E9U|A Chain A, Structure Of H-Chk1 Complexed With A780125
Length = 269
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
K++ H N+V+ +G R YL EY G EL + R + IG+ + A RF
Sbjct: 59 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
H + + D+ P +++D +D +L++S GLA Y + +N
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 167
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
+ YVAPE + ++ E D++ G++L +L G+ P D +S E++ +
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 224
Query: 898 CHLDTW 903
+L+ W
Sbjct: 225 TYLNPW 230
>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor
Length = 269
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
K++ H N+V+ +G R YL EY G EL + R + IG+ + A RF
Sbjct: 60 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 110
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
H + + D+ P +++D +D +L++S GLA Y + +N
Sbjct: 111 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 168
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
+ YVAPE + ++ E D++ G++L +L G+ P D +S E++ +
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 225
Query: 898 CHLDTW 903
+L+ W
Sbjct: 226 TYLNPW 231
>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine
Analog
pdb|2GDO|A Chain A, 4-(aminoalkylamino)-3-benzimidazole-quinolinones As Potent
Chk1 Inhibitors
Length = 295
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
K++ H N+V+ +G R YL EY G EL + R + IG+ + A RF
Sbjct: 60 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 110
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
H + + D+ P +++D +D +L++S GLA Y + +N
Sbjct: 111 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 168
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
+ YVAPE + ++ E D++ G++L +L G+ P D +S E++ +
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 225
Query: 898 CHLDTW 903
+L+ W
Sbjct: 226 TYLNPW 231
>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1
pdb|4GH2|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
K++ H N+V+ +G R YL EY G EL + R + IG+ + A RF
Sbjct: 59 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
H + + D+ P +++D +D +L++S GLA Y + +N
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMX 167
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
+ YVAPE + ++ E D++ G++L +L G+ P D +S E++ +
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSXQEYSDWKEKK 224
Query: 898 CHLDTW 903
+L+ W
Sbjct: 225 TYLNPW 230
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 10/148 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 69 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQRTATYITELANALSYC 128
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S + Y+ PE E
Sbjct: 129 HSKRVIHRDIKPENLLLGSNGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 184
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADA 879
+ EK D++ G++ + L G P +A
Sbjct: 185 RMHDEKVDLWSLGVLCYEFLVGMPPFEA 212
>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With
Bound Inhibitor Fragment
Length = 293
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
K I HPN++ LH V ++ L+ E + G EL + L +L+ E + I +
Sbjct: 68 KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 127
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
+LH S + D+ P +++ ++ P R+ + GLA+ D + +VA
Sbjct: 128 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 184
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
PE + + + D++ G+I LL+G SP
Sbjct: 185 PEIVNYEPLGLEADMWSIGVITYILLSGASP 215
>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20
pdb|2HXL|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1
pdb|2HXQ|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2
pdb|2HY0|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 22
pdb|3F9N|A Chain A, Crystal Structure Of Chk1 Kinase In Complex With Inhibitor
38
Length = 322
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
K++ H N+V+ +G R YL EY G EL + R + IG+ + A RF
Sbjct: 59 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSINSSA 842
H + + D+ P +++D +D +L++S GLA Y + +N
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 167
Query: 843 ----YVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
YVAPE + ++ E D++ G++L +L G+ P D +S E++ +
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 224
Query: 898 CHLDTW 903
+L+ W
Sbjct: 225 TYLNPW 230
>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54
pdb|2QHM|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2a
pdb|2QHN|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1a
pdb|3TKH|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S01
pdb|3TKI|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S25
Length = 323
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
K++ H N+V+ +G R YL EY G EL + R + IG+ + A RF
Sbjct: 60 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 110
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSINSSA 842
H + + D+ P +++D +D +L++S GLA Y + +N
Sbjct: 111 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 168
Query: 843 ----YVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
YVAPE + ++ E D++ G++L +L G+ P D +S E++ +
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 225
Query: 898 CHLDTW 903
+L+ W
Sbjct: 226 TYLNPW 231
>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp
pdb|3GU5|A Chain A, Crystal Structure Of Dapkq23v-Amppnp-Mg2+
pdb|3GU6|A Chain A, Crystal Structure Of Dapkq23v-Adp
pdb|3GU7|A Chain A, Crystal Structure Of Dapkq23v-Adp-Mg2+
Length = 295
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
K I HPN++ LH V ++ L+ E + G EL + L +L+ E + I +
Sbjct: 69 KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
+LH S + D+ P +++ ++ P R+ + GLA+ D + +VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
PE + + + D++ G+I LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216
>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277
Length = 277
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
K I HPN++ LH V ++ L+ E + G EL + L +L+ E + I +
Sbjct: 69 KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
+LH S + D+ P +++ ++ P R+ + GLA+ D + +VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
PE + + + D++ G+I LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216
>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase
In Complex With Amppnp And Mg2+
Length = 295
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
K I HPN++ LH V ++ L+ E + G EL + L +L+ E + I +
Sbjct: 69 KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
+LH S + D+ P +++ ++ P R+ + GLA+ D + +VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
PE + + + D++ G+I LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 98/207 (47%), Gaps = 31/207 (14%)
Query: 131 LSRLEILDLSNNMLSGKIPEEIGSFSGL---KVLDLGGNVLVGEIPLSISNITSLQIFTL 187
L LEIL LS N + EIG+F+GL L+L N L + ++ L+ L
Sbjct: 87 LRHLEILQLSRNHIRTI---EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143
Query: 188 ASNQLIGSIPR------------EIGQLRNLKWIYLG---------YNNLSGEIPKEIGD 226
+N I SIP ++G+L+ L +I G Y NL+ +EI +
Sbjct: 144 RNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202
Query: 227 LT---SLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDL 283
LT L+ LDL N+L+ P SF L +L+ L++ Q+++ + L+SLV +L
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL 262
Query: 284 SDNYLSGEIPEEVIQLQNLEILHLFSN 310
+ N L+ + L +LE +HL N
Sbjct: 263 AHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 469 LENLDLSE-NRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQL 527
L LDL E R S +F LS L L ++ L +IP L+ KL LDLS N L
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-REIPN-LTPLIKLDELDLSGNHL 219
Query: 528 SGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHF 575
S P S + L +L + ++Q+ + SLV++N++HN+
Sbjct: 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mn.
pdb|1JKL|A Chain A, 1.6a X-Ray Structure Of Binary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue
pdb|1JKS|A Chain A, 1.5a X-Ray Structure Of Apo Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|A Chain A, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|B Chain B, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKK|A Chain A, 2.4a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mg.
pdb|3F5G|A Chain A, Crystal Structure Of Death Associated Protein Kinase In
Complex With Adp And Mg2+
pdb|3EH9|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Adp
pdb|3EHA|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Amppnp
Length = 294
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
K I HPN++ LH V ++ L+ E + G EL + L +L+ E + I +
Sbjct: 68 KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 127
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
+LH S + D+ P +++ ++ P R+ + GLA+ D + +VA
Sbjct: 128 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 184
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
PE + + + D++ G+I LL+G SP
Sbjct: 185 PEIVNYEPLGLEADMWSIGVITYILLSGASP 215
>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In
Complex With A Ruthenium Octasporine Ligand (Osv)
pdb|2Y4P|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|3ZXT|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
Length = 285
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
K I HPN++ LH V ++ L+ E + G EL + L +L+ E + I +
Sbjct: 69 KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
+LH S + D+ P +++ ++ P R+ + GLA+ D + +VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
PE + + + D++ G+I LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216
>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304
Length = 326
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
K I HPN++ LH V ++ L+ E + G EL + L +L+ E + I +
Sbjct: 69 KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
+LH S + D+ P +++ ++ P R+ + GLA+ D + +VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
PE + + + D++ G+I LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216
>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain With
Amppnp
pdb|3DGK|A Chain A, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain
Length = 295
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
K I HPN++ LH V ++ L+ E + G EL + L +L+ E + I +
Sbjct: 69 KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
+LH S + D+ P +++ ++ P R+ + GLA+ D + +VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
PE + + + D++ G+I LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216
>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
pdb|1Y8G|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
Length = 327
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 30/186 (16%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQ--FGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS 769
V KIID + +SS + K++ HPNIV+L V +EK YLV EY G E+
Sbjct: 42 VAVKIIDKTQLNSSSLQKLFREVRIXKVLNHPNIVKLFEVIETEKTLYLVXEYASGGEVF 101
Query: 770 EVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS 825
+ L R E R K I A+++ H +V D+ +++D + +++++
Sbjct: 102 DYLVAHGRXKEKEARAKFR-QIVSAVQYCH---QKFIVHRDLKAENLLLDA--DXNIKIA 155
Query: 826 VPGL-----------AYCTDSKSINSSAYVAPETKESKDIT-EKGDIYGFGLILIDLLTG 873
G A+C + Y APE + K + D++ G+IL L++G
Sbjct: 156 DFGFSNEFTFGNKLDAFC------GAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSG 209
Query: 874 KSPADA 879
P D
Sbjct: 210 SLPFDG 215
>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVX|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVY|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
Length = 278
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
K I HPN++ LH V ++ L+ E + G EL + L +L+ E + I +
Sbjct: 69 KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
+LH S + D+ P +++ ++ P R+ + GLA+ D + +VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
PE + + + D++ G+I LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216
>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex
Length = 334
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
K I HPN++ LH V ++ L+ E + G EL + L +L+ E + I +
Sbjct: 69 KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
+LH S + D+ P +++ ++ P R+ + GLA+ D + +VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
PE + + + D++ G+I LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216
>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312
pdb|2XZS|B Chain B, Death Associated Protein Kinase 1 Residues 1-312
Length = 312
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
K I HPN++ LH V ++ L+ E + G EL + L +L+ E + I +
Sbjct: 69 KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
+LH S + D+ P +++ ++ P R+ + GLA+ D + +VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
PE + + + D++ G+I LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216
>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
Length = 327
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFG--KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS 769
V +IID + +SS + K++ HPNIV+L V +EK YLV EY G E+
Sbjct: 42 VAVRIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVF 101
Query: 770 EVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS 825
+ L R E R K I A+++ H +V D+ +++D + +
Sbjct: 102 DYLVAHGRMKEKEARAKFR-QIVSAVQYCH---QKFIVHRDLKAENLLLDAD----MNIK 153
Query: 826 VPGLAYCTD-------SKSINSSAYVAPETKESKDIT-EKGDIYGFGLILIDLLTGKSPA 877
+ + + + S Y APE + K + D++ G+IL L++G P
Sbjct: 154 IADFGFSNEFTFGNKLDEFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF 213
Query: 878 DA 879
D
Sbjct: 214 DG 215
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 49.7 bits (117), Expect = 8e-06, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 10/148 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+RL+G YL+ EY + L+ LS ++ A I + L +
Sbjct: 69 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQRTATYITELANALSYC 128
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
S V+ D+ P +++ E L + + + S Y+ PE E
Sbjct: 129 HSKRVIHRDIKPENLLLGSNGE----LKIADFGWSVHAPSSRRDTLCGTLDYLPPEMIEG 184
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADA 879
+ EK D++ G++ + L G P +A
Sbjct: 185 RMHDEKVDLWSLGVLCYEFLVGMPPFEA 212
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 152 IGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREI-GQLRNLKWIY 210
+ + L L L GN L +T+L+ L NQL S+P + +L NL ++
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLN 139
Query: 211 LGYNNLSGEIPKEIGD-LTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIP 269
L +N L +PK + D LT+L LDL YN L F L+ L+ L LYQN+L S+P
Sbjct: 140 LAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVP 197
Query: 270 KSILG-LKSLVSFDLSDN 286
+ L SL L DN
Sbjct: 198 DGVFDRLTSLQYIWLHDN 215
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 96/198 (48%), Gaps = 17/198 (8%)
Query: 152 IGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREI-GQLRNLKWIY 210
I ++ L LGGN L +I ++ +T+L L NQL S+P + +L NLK +
Sbjct: 59 IQYLPNVRYLALGGNKL-HDIS-ALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELV 115
Query: 211 LGYNNLSGEIPKEIGD-LTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIP 269
L N L +P + D LT+L +L+L +N L F L+NL L L N+L S+P
Sbjct: 116 LVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLP 173
Query: 270 KSILG-LKSLVSFDLSDNYLSGEIPEEVI-QLQNLEILHLFSNNFTGKIPSSLASMPKLQ 327
+ + L L L N L +P+ V +L +L+ + L N + + P ++
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIR 225
Query: 328 VLQLWSNQFSGEIPSNLG 345
L W N+ SG + ++ G
Sbjct: 226 YLSEWINKHSGVVRNSAG 243
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 70/165 (42%), Gaps = 7/165 (4%)
Query: 419 LPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLD---LS 475
LP V +L + GN L I K E+T+L L L GN LP+ D+L NL L
Sbjct: 62 LPNVRYLALGGNKLHD-ISALK-ELTNLTYLILTGNQLQS-LPNGV-FDKLTNLKELVLV 117
Query: 476 ENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASL 535
EN+ F +L+ L L ++ N+L L LDLS NQL
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Query: 536 SEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLP 580
++ L L L +NQL R+ SL + + N + + P
Sbjct: 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 128 IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTL 187
+ L+ L L L+ N L + LK L L N L +T+L L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 188 ASNQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEIGD-LTSLNHLDLVYNNLTGQIP 245
A NQL S+P+ + +L NL + L YN L +P+ + D LT L L L N L
Sbjct: 141 AHNQL-QSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVPD 198
Query: 246 PSFGNLSNLRYLFLYQNKLTGSIP 269
F L++L+Y++L+ N + P
Sbjct: 199 GVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 67/159 (42%), Gaps = 8/159 (5%)
Query: 251 LSNLRYLFLYQNKLTG-SIPKSILGLKSLVSFDLSDNYLSGEIPEEVI-QLQNLEILHLF 308
L N+RYL L NKL S K + L L+ L+ N L +P V +L NL+ L L
Sbjct: 62 LPNVRYLALGGNKLHDISALKELTNLTYLI---LTGNQLQS-LPNGVFDKLTNLKELVLV 117
Query: 309 SNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETL 368
N + L L L NQ K NLT +DLS N L +PE +
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGV 176
Query: 369 CDSGSLFK-LILFSNSLEGKIPNSLSTCKSLRRVRLQNN 406
D + K L L+ N L+ SL+ + L +N
Sbjct: 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium
Parvum Calcium Dependent Protein Kinase In Complex With
3- Mb-Pp1
Length = 287
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 16/196 (8%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKI--IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGV 749
GK K + ++ VK I TS+ +V KL HPNI++L +
Sbjct: 31 GKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKL-DHPNIMKLFEI 89
Query: 750 CRSEKAAYLVYEYIEGKEL-SEVLRNLSWERRRKVAI--GIAKALRFLHFHCSPSVVAGD 806
+ Y+V E G EL E+++ + I + + ++H H ++V D
Sbjct: 90 LEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH---NIVHRD 146
Query: 807 VSPGKVIVDGKDEP-HLRLSVPGLAYCTDSKS-----INSSAYVAPETKESKDITEKGDI 860
+ P ++++ K++ +++ GL+ C + I ++ Y+APE EK D+
Sbjct: 147 LKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGT-YDEKCDV 205
Query: 861 YGFGLILIDLLTGKSP 876
+ G+IL LL+G P
Sbjct: 206 WSAGVILYILLSGTPP 221
>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
Length = 327
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFG--KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS 769
V +IID + +SS + K++ HPNIV+L V +EK YLV EY G E+
Sbjct: 42 VAVRIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVF 101
Query: 770 EVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS 825
+ L R E R K I A+++ H +V D+ +++D + +
Sbjct: 102 DYLVAHGRMKEKEARAKFR-QIVSAVQYCH---QKFIVHRDLKAENLLLDAD----MNIK 153
Query: 826 VPGLAYCTDSKSIN-------SSAYVAPETKESKDIT-EKGDIYGFGLILIDLLTGKSPA 877
+ + + N S Y APE + K + D++ G+IL L++G P
Sbjct: 154 IADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF 213
Query: 878 DA 879
D
Sbjct: 214 DG 215
>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
Length = 327
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 30/186 (16%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFG--KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS 769
V KIID + +SS + K++ HPNIV+L V +EK YLV EY G E+
Sbjct: 42 VAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVF 101
Query: 770 EVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS 825
+ L R E R K I A+++ H +V D+ +++D + +++++
Sbjct: 102 DYLVAHGRMKEKEARAKFR-QIVSAVQYCH---QKFIVHRDLKAENLLLDA--DMNIKIA 155
Query: 826 VPGL-----------AYCTDSKSINSSAYVAPETKESKDIT-EKGDIYGFGLILIDLLTG 873
G A+C + Y APE + K + D++ G+IL L++G
Sbjct: 156 DFGFSNEFTFGNKLDAFC------GAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSG 209
Query: 874 KSPADA 879
P D
Sbjct: 210 SLPFDG 215
>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent
Protein Kinase Cgd3_920 From Cryptosporidium Parvum
Length = 286
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 16/196 (8%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKI--IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGV 749
GK K + ++ VK I TS+ +V KL HPNI++L +
Sbjct: 31 GKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKL-DHPNIMKLFEI 89
Query: 750 CRSEKAAYLVYEYIEGKEL-SEVLRNLSWERRRKVAI--GIAKALRFLHFHCSPSVVAGD 806
+ Y+V E G EL E+++ + I + + ++H H ++V D
Sbjct: 90 LEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH---NIVHRD 146
Query: 807 VSPGKVIVDGKDEP-HLRLSVPGLAYCTDSKS-----INSSAYVAPETKESKDITEKGDI 860
+ P ++++ K++ +++ GL+ C + I ++ Y+APE EK D+
Sbjct: 147 LKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGT-YDEKCDV 205
Query: 861 YGFGLILIDLLTGKSP 876
+ G+IL LL+G P
Sbjct: 206 WSAGVILYILLSGTPP 221
>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302
Length = 302
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
K I HPN++ LH V ++ L+ E + G EL + L +L+ E + I +
Sbjct: 69 KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
+LH S + D+ P +++ ++ P R+ + GLA+ D + +VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
PE + + + D++ G+I LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 95/207 (45%), Gaps = 31/207 (14%)
Query: 131 LSRLEILDLSNNMLSGKIPEEIGSFSGL---KVLDLGGNVLVGEIPLSISNITSLQIFTL 187
L LEIL LS N++ KI E+G+F+GL L+L N L + ++ L+ L
Sbjct: 58 LRHLEILQLSKNLVR-KI--EVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWL 114
Query: 188 ASNQLIGSIPR------------EIGQLRNLKWIY---------LGYNNLSGEIPKEIGD 226
+N I SIP ++G+L+ L++I L Y NL K+I +
Sbjct: 115 RNNP-IESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN 173
Query: 227 LTSL---NHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDL 283
LT+L L+L N L P SF L++LR L+L ++ + LKSL +L
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNL 233
Query: 284 SDNYLSGEIPEEVIQLQNLEILHLFSN 310
S N L + L LE +HL N
Sbjct: 234 SHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 69/156 (44%), Gaps = 2/156 (1%)
Query: 373 SLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDL 432
SL L LF N L + LR + L+NN + S F R+P + LD+
Sbjct: 84 SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKR 143
Query: 433 SGRIGEQKWE-MTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLS 491
I E +E + +L+ LNL N +P+ +LE L+LS NR P SF L+
Sbjct: 144 LEYISEAAFEGLVNLRYLNLGMCNLKD-IPNLTALVRLEELELSGNRLDLIRPGSFQGLT 202
Query: 492 ELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQL 527
L +L + ++ K L L+LS+N L
Sbjct: 203 SLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 7/207 (3%)
Query: 377 LILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRI 436
L L NS++ ++ + L ++L N + F LP + L++ N L+ +
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT-V 98
Query: 437 GEQKWE-MTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSE-NRFSGTIPRSFGRLSEL 493
Q +E ++ L+ L L N +F L LDL E R +F L L
Sbjct: 99 PTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNL 158
Query: 494 MQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSG 553
L + L DIP L++ +L L+LS N+L P S + L +L L Q++
Sbjct: 159 RYLNLGMCNL-KDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 554 KIPQTLGRVASLVQVNISHNHFHGSLP 580
+ SL ++N+SHN+ SLP
Sbjct: 217 IERNAFDDLKSLEELNLSHNNL-MSLP 242
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Query: 447 QMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFG 505
+ LNL N+ D+F LE L LS+N +F L L L++ N+L
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 506 DIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSE 548
+ KL L L NN + + + +P L +LDL E
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE 140
>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine
pdb|3GUB|A Chain A, Crystal Structure Of Dapkl93g Complexed With N6-(2-
Phenylethyl)adenosine
Length = 295
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
K I HPN++ LH V ++ L+ E + G EL + L +L+ E + I +
Sbjct: 69 KEIQHPNVITLHEVYENKTDVILIGELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
+LH S + D+ P +++ ++ P R+ + GLA+ D + +VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
PE + + + D++ G+I LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 10/142 (7%)
Query: 128 IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTL 187
+ SL+ L LDL+NN +S P + + L L LG N + PL + +T+L L
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL--AGLTALTNLEL 290
Query: 188 ASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS 247
NQL P I L+NL ++ L +NN+S P + LT L L YNN + S
Sbjct: 291 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDV-SS 344
Query: 248 FGNLSNLRYLFLYQNKLTGSIP 269
NL+N+ +L N+++ P
Sbjct: 345 LANLTNINWLSAGHNQISDLTP 366
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 125/281 (44%), Gaps = 65/281 (23%)
Query: 57 CQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIXXXXXXXXXXX 116
+N T++N +ELS+ IS S++ L ++ ++ SSNQ+
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQV------------------- 163
Query: 117 XXXXXXTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSI 176
T P+ +L+ LE LD+S+N +S + + L+ L N + PL I
Sbjct: 164 ------TDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI 215
Query: 177 SNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLV 236
+T+L +L NQL ++IG L LT+L LDL
Sbjct: 216 --LTNLDELSLNGNQL-----KDIGTL---------------------ASLTNLTDLDLA 247
Query: 237 YNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEV 296
N ++ P L+ L L L N+++ P + GL +L + +L++N L P +
Sbjct: 248 NNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--I 301
Query: 297 IQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFS 337
L+NL L L+ NN + P ++S+ KLQ L ++N+ S
Sbjct: 302 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 340
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 113/258 (43%), Gaps = 45/258 (17%)
Query: 348 NNLTVIDLSTNFLTGKIP--------------------ETLCDSGSLFKLILFSNSLEGK 387
NNLT I+ S N LT P L + +L L LF+N +
Sbjct: 63 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 122
Query: 388 IPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQ 447
P L +L R+ L +N +S S + L + L S N ++ + +T+L+
Sbjct: 123 DP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDL--KPLANLTTLE 176
Query: 448 MLNLAGNNFS-----GKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNK 502
L+++ N S KL + LE+L + N+ S P G L+ L +L ++ N+
Sbjct: 177 RLDISSNKVSDISVLAKLTN------LESLIATNNQISDITP--LGILTNLDELSLNGNQ 228
Query: 503 LFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRV 562
L DI L+S L LDL+NNQ+S P LS + L +L L NQ+S P L +
Sbjct: 229 L-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 282
Query: 563 ASLVQVNISHNHFHGSLP 580
+L + ++ N P
Sbjct: 283 TALTNLELNENQLEDISP 300
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 95/207 (45%), Gaps = 31/207 (14%)
Query: 131 LSRLEILDLSNNMLSGKIPEEIGSFSGL---KVLDLGGNVLVGEIPLSISNITSLQIFTL 187
L LEIL LS N++ KI E+G+F+GL L+L N L + ++ L+ L
Sbjct: 58 LRHLEILQLSKNLVR-KI--EVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWL 114
Query: 188 ASNQLIGSIPR------------EIGQLRNLKWIY---------LGYNNLSGEIPKEIGD 226
+N I SIP ++G+L+ L++I L Y NL K+I +
Sbjct: 115 RNNP-IESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN 173
Query: 227 LTSL---NHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDL 283
LT+L L+L N L P SF L++LR L+L ++ + LKSL +L
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNL 233
Query: 284 SDNYLSGEIPEEVIQLQNLEILHLFSN 310
S N L + L LE +HL N
Sbjct: 234 SHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 69/156 (44%), Gaps = 2/156 (1%)
Query: 373 SLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDL 432
SL L LF N L + LR + L+NN + S F R+P + LD+
Sbjct: 84 SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKR 143
Query: 433 SGRIGEQKWE-MTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLS 491
I E +E + +L+ LNL N +P+ +LE L+LS NR P SF L+
Sbjct: 144 LEYISEAAFEGLVNLRYLNLGMCNLK-DIPNLTALVRLEELELSGNRLDLIRPGSFQGLT 202
Query: 492 ELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQL 527
L +L + ++ K L L+LS+N L
Sbjct: 203 SLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 7/207 (3%)
Query: 377 LILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRI 436
L L NS++ ++ + L ++L N + F LP + L++ N L+ +
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT-V 98
Query: 437 GEQKWE-MTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSE-NRFSGTIPRSFGRLSEL 493
Q +E ++ L+ L L N +F L LDL E R +F L L
Sbjct: 99 PTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNL 158
Query: 494 MQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSG 553
L + L DIP L++ +L L+LS N+L P S + L +L L Q++
Sbjct: 159 RYLNLGMCNL-KDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 554 KIPQTLGRVASLVQVNISHNHFHGSLP 580
+ SL ++N+SHN+ SLP
Sbjct: 217 IERNAFDDLKSLEELNLSHNNLM-SLP 242
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Query: 447 QMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFG 505
+ LNL N+ D+F LE L LS+N +F L L L++ N+L
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 506 DIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSE 548
+ KL L L NN + + + +P L +LDL E
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE 140
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 10/142 (7%)
Query: 128 IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTL 187
+ SL+ L LDL+NN +S P + + L L LG N + PL + +T+L L
Sbjct: 234 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL--AGLTALTNLEL 289
Query: 188 ASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS 247
NQL P I L+NL ++ L +NN+S P + LT L L YNN + S
Sbjct: 290 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDV-SS 343
Query: 248 FGNLSNLRYLFLYQNKLTGSIP 269
NL+N+ +L N+++ P
Sbjct: 344 LANLTNINWLSAGHNQISDLTP 365
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 98/211 (46%), Gaps = 38/211 (18%)
Query: 127 PIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFT 186
P+ +L+ LE LD+S+N +S + + L+ L N + PL I +T+L +
Sbjct: 167 PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELS 222
Query: 187 LASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP 246
L NQL ++IG L LT+L LDL N ++ P
Sbjct: 223 LNGNQL-----KDIGTL---------------------ASLTNLTDLDLANNQISNLAP- 255
Query: 247 SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILH 306
L+ L L L N+++ P + GL +L + +L++N L P + L+NL L
Sbjct: 256 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 310
Query: 307 LFSNNFTGKIPSSLASMPKLQVLQLWSNQFS 337
L+ NN + P ++S+ KLQ L ++N+ S
Sbjct: 311 LYFNNISDISP--VSSLTKLQRLFFYNNKVS 339
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 116/260 (44%), Gaps = 50/260 (19%)
Query: 348 NNLTVIDLSTNFLTGKIP--------------------ETLCDSGSLFKLILFSNSLEGK 387
NNLT I+ S N LT P L + +L L LF+N +
Sbjct: 63 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 122
Query: 388 IPNSLSTCKSLRRVRLQNNRLSGELS--SEFTRLPLVYFLDISGNDLSGRIGEQKWEMTS 445
P L +L R+ L +N +S ++S S T L + F GN ++ + +T+
Sbjct: 123 DP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLNF----GNQVTDL--KPLANLTT 173
Query: 446 LQMLNLAGNNFS-----GKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISR 500
L+ L+++ N S KL + LE+L + N+ S P G L+ L +L ++
Sbjct: 174 LERLDISSNKVSDISVLAKLTN------LESLIATNNQISDITP--LGILTNLDELSLNG 225
Query: 501 NKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLG 560
N+L DI L+S L LDL+NNQ+S P LS + L +L L NQ+S P L
Sbjct: 226 NQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 279
Query: 561 RVASLVQVNISHNHFHGSLP 580
+ +L + ++ N P
Sbjct: 280 GLTALTNLELNENQLEDISP 299
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 10/142 (7%)
Query: 128 IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTL 187
+ SL+ L LDL+NN +S P + + L L LG N + PL + +T+L L
Sbjct: 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL--AGLTALTNLEL 294
Query: 188 ASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS 247
NQL P I L+NL ++ L +NN+S P + LT L L YNN + S
Sbjct: 295 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDV-SS 348
Query: 248 FGNLSNLRYLFLYQNKLTGSIP 269
NL+N+ +L N+++ P
Sbjct: 349 LANLTNINWLSAGHNQISDLTP 370
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 101/214 (47%), Gaps = 44/214 (20%)
Query: 127 PIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFT 186
P+ +L+ LE LD+S+N KV D+ ++ +T+L+
Sbjct: 172 PLANLTTLERLDISSN----------------KVSDIS----------VLAKLTNLESLI 205
Query: 187 LASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIG---DLTSLNHLDLVYNNLTGQ 243
+NQ+ P +G L NL + L N L K+IG LT+L LDL N ++
Sbjct: 206 ATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLDLANNQISNL 258
Query: 244 IPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLE 303
P L+ L L L N+++ P + GL +L + +L++N L P + L+NL
Sbjct: 259 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 312
Query: 304 ILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFS 337
L L+ NN + P ++S+ KLQ L ++N+ S
Sbjct: 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 116/260 (44%), Gaps = 50/260 (19%)
Query: 348 NNLTVIDLSTNFLTGKIP--------------------ETLCDSGSLFKLILFSNSLEGK 387
NNLT I+ S N LT P L + +L L LF+N +
Sbjct: 68 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 127
Query: 388 IPNSLSTCKSLRRVRLQNNRLSGELS--SEFTRLPLVYFLDISGNDLSGRIGEQKWEMTS 445
P L +L R+ L +N +S ++S S T L + F GN ++ + +T+
Sbjct: 128 DP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSF----GNQVTDL--KPLANLTT 178
Query: 446 LQMLNLAGNNFS-----GKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISR 500
L+ L+++ N S KL + LE+L + N+ S P G L+ L +L ++
Sbjct: 179 LERLDISSNKVSDISVLAKLTN------LESLIATNNQISDITP--LGILTNLDELSLNG 230
Query: 501 NKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLG 560
N+L DI L+S L LDL+NNQ+S P LS + L +L L NQ+S P L
Sbjct: 231 NQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 284
Query: 561 RVASLVQVNISHNHFHGSLP 580
+ +L + ++ N P
Sbjct: 285 GLTALTNLELNENQLEDISP 304
>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
pdb|2VZ6|B Chain B, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
Length = 313
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 9/149 (6%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALR-FL 794
+L+ HPNIVRLH E YL+++ + G EL E + + + I + L L
Sbjct: 76 RLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVL 135
Query: 795 HFHCSPSVVAGDVSPGKVIVDGK-DEPHLRLSVPGLAYCTDSKS------INSSAYVAPE 847
H H VV D+ P +++ K ++L+ GLA + + + Y++PE
Sbjct: 136 HCH-QMGVVHRDLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPE 194
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
+ D++ G+IL LL G P
Sbjct: 195 VLRKDPYGKPVDLWACGVILYILLVGYPP 223
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 39 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 97
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + D++ +V E HL +++
Sbjct: 98 LRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 151
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 152 DFGLSRLMTGDTFTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 211
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
G+ S V Y D ++ ++ E+M C +P+ R
Sbjct: 212 P---GIDPSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 254
Query: 938 PCASDVTKTLESCFRISS 955
P +++ + E+ F+ SS
Sbjct: 255 PSFAEIHQAFETMFQESS 272
>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
pdb|1YRP|B Chain B, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
Length = 278
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 7/146 (4%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
I HPNI+ LH + ++ L+ E + G EL + L + + + L +H+
Sbjct: 72 IRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYL 131
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTDS----KSI-NSSAYVAPETKE 850
S + D+ P +++ K+ P+ R+ + G+A+ ++ K+I + +VAPE
Sbjct: 132 HSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVN 191
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
+ + + D++ G+I LL+G SP
Sbjct: 192 YEPLGLEADMWSIGVITYILLSGASP 217
>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
pdb|2J90|B Chain B, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
Length = 304
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 7/146 (4%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
I HPNI+ LH + ++ L+ E + G EL + L + + + L +H+
Sbjct: 86 IRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYL 145
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTDS----KSI-NSSAYVAPETKE 850
S + D+ P +++ K+ P+ R+ + G+A+ ++ K+I + +VAPE
Sbjct: 146 HSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVN 205
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
+ + + D++ G+I LL+G SP
Sbjct: 206 YEPLGLEADMWSIGVITYILLSGASP 231
>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
Length = 328
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 24/183 (13%)
Query: 712 VVKKIID---VNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL 768
V KIID +N + + +V + K++ HPNIV+L V +EK YL+ EY G E+
Sbjct: 40 VAIKIIDKTQLNPTSLQKLFREV-RIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEV 98
Query: 769 SEVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRL 824
+ L R E R K I A+++ H +V D+ +++D + +
Sbjct: 99 FDYLVAHGRMKEKEARSKFR-QIVSAVQYCH---QKRIVHRDLKAENLLLDA----DMNI 150
Query: 825 SVPGLAYCTD-------SKSINSSAYVAPETKESKDIT-EKGDIYGFGLILIDLLTGKSP 876
+ + + S Y APE + K + D++ G+IL L++G P
Sbjct: 151 KIADFGFSNEFTVGGKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLP 210
Query: 877 ADA 879
D
Sbjct: 211 FDG 213
>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
Length = 328
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 32/187 (17%)
Query: 712 VVKKIID---VNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL 768
V KIID +N + + +V + K++ HPNIV+L V +EK YL+ EY G E+
Sbjct: 43 VAIKIIDKTQLNPTSLQKLFREV-RIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEV 101
Query: 769 SEVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRL 824
+ L R E R K I A+++ H +V D+ +++D + ++++
Sbjct: 102 FDYLVAHGRMKEKEARSKFR-QIVSAVQYCH---QKRIVHRDLKAENLLLDA--DMNIKI 155
Query: 825 SVPGL-----------AYCTDSKSINSSAYVAPETKESKDIT-EKGDIYGFGLILIDLLT 872
+ G A+C + Y APE + K + D++ G+IL L++
Sbjct: 156 ADFGFSNEFTVGGKLDAFC------GAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVS 209
Query: 873 GKSPADA 879
G P D
Sbjct: 210 GSLPFDG 216
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 125/313 (39%), Gaps = 45/313 (14%)
Query: 128 IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSI----SNITSLQ 183
S LE L+L+ N++S P + L+ L L N L IPL + SN+T L
Sbjct: 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLD 110
Query: 184 IFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQ 243
I + N+++ + L NLK + +G N+L + L SL L L NLT
Sbjct: 111 I---SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167
Query: 244 IPPSFGNLS-----NLRYL-----------FLYQNK---------LTGSIPKSILGLKSL 278
+ +L LR+L LY+ K L P + GL +L
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NL 226
Query: 279 VSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSG 338
S ++ L+ V L L L+L N + S L + +LQ +QL Q +
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286
Query: 339 EIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSL 398
P N L V+++S N LT G+L LIL SN L C+ L
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA-------CDCRLL 339
Query: 399 ----RRVRLQNNR 407
RR RL NR
Sbjct: 340 WVFRRRWRLNFNR 352
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 128/312 (41%), Gaps = 32/312 (10%)
Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIF 185
VP G + +LDL N + +E SF L+ L+L N++ P + +N+ +L+
Sbjct: 26 VPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTL 85
Query: 186 TLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIP 245
L SN+L K I LG L++L LD+ N + +
Sbjct: 86 GLRSNRL--------------KLIPLGV----------FTGLSNLTKLDISENKIVILLD 121
Query: 246 PSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEIL 305
F +L NL+ L + N L ++ GL SL L L+ E + L L +L
Sbjct: 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181
Query: 306 HLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIP 365
L N S + +L+VL++ + + N NLT + ++ LT +P
Sbjct: 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VP 240
Query: 366 ETLCDSGSLFKLILFS----NSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPL 421
+ + S +++EG + + L L+ ++L +L+ F L
Sbjct: 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHEL---LRLQEIQLVGGQLAVVEPYAFRGLNY 297
Query: 422 VYFLDISGNDLS 433
+ L++SGN L+
Sbjct: 298 LRVLNVSGNQLT 309
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 1/150 (0%)
Query: 424 FLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGT 482
LD+ N + ++ L+ L L N S P +F + L L L NR
Sbjct: 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95
Query: 483 IPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLG 542
F LS L +L IS NK+ + L SL++ +N L + S + L
Sbjct: 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155
Query: 543 QLDLSENQLSGKIPQTLGRVASLVQVNISH 572
QL L + L+ + L + L+ + + H
Sbjct: 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 79/213 (37%), Gaps = 5/213 (2%)
Query: 361 TGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLP 420
TG P C+ + + +L +P + T R + L NR+ EF P
Sbjct: 1 TGCPPR--CECSAQDRAVLCHRKRFVAVPEGIPT--ETRLLDLGKNRIKTLNQDEFASFP 56
Query: 421 LVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSF-GSDQLENLDLSENRF 479
+ L+++ N +S + +L+ L L N F G L LD+SEN+
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 480 SGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMP 539
+ F L L L++ N L S L L L L+ +LS +
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176
Query: 540 VLGQLDLSENQLSGKIPQTLGRVASLVQVNISH 572
L L L ++ + R+ L + ISH
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A
Pyrrolo-Pyridine Inhibitor
Length = 273
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 32/185 (17%)
Query: 737 LIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRFL 794
++ H N+V+ +G R YL EY G EL + R + IG+ + A RF
Sbjct: 61 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRFF 111
Query: 795 H-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN---- 839
H + + D+ P +++D +D +L++S GLA Y + +N
Sbjct: 112 HQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMCG 169
Query: 840 SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDC 898
+ YVAPE + ++ E D++ G++L +L G+ P D +S E++ +
Sbjct: 170 TLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKKT 226
Query: 899 HLDTW 903
+L+ W
Sbjct: 227 YLNPW 231
>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With A Beta-Carboline Ligand
pdb|3BQR|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With An Imidazo-Pyridazine Ligand
Length = 283
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 7/146 (4%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
I HPNI+ LH + ++ L+ E + G EL + L + + + L +H+
Sbjct: 65 IRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYL 124
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTDS----KSI-NSSAYVAPETKE 850
S + D+ P +++ K+ P+ R+ + G+A+ ++ K+I + +VAPE
Sbjct: 125 HSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVN 184
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
+ + + D++ G+I LL+G SP
Sbjct: 185 YEPLGLEADMWSIGVITYILLSGASP 210
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 39 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDY 97
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + D++ +V E HL +++
Sbjct: 98 LRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 151
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 152 DFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 211
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
G+ S V Y D ++ ++ E+M C +P+ R
Sbjct: 212 P---GIDPSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 254
Query: 938 PCASDVTKTLESCFRISS 955
P +++ + E+ F+ SS
Sbjct: 255 PSFAEIHQAFETMFQESS 272
>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native
pdb|3MFS|A Chain A, Cask-4m Cam Kinase Domain, Amppnp
pdb|3MFT|A Chain A, Cask-4m Cam Kinase Domain, Mn2+
pdb|3MFU|A Chain A, Cask-4m Cam Kinase Domain, Amppnp-Mn2+
Length = 351
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 103/235 (43%), Gaps = 32/235 (13%)
Query: 677 DEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVS---- 732
D+++ E GK S + + QF VK I+DV T+S P +S
Sbjct: 18 DDVLFEDVYELCEVIGKGAFSVVRRCINRETGQQFAVK-IVDVAKFTSS---PGLSTEDL 73
Query: 733 ----QFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS-EVLRNLSWERRRKVAIG- 786
++ HP+IV L S+ Y+V+E+++G +L E+++ A+
Sbjct: 74 KREASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVAS 133
Query: 787 -----IAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVPGLAY------CTD 834
I +ALR+ H +++ DV P V++ K+ ++L G+A
Sbjct: 134 HYMRQILEALRYCH---DNNIIHRDVKPENVLLASKENSAPVKLGDFGVAIQLGESGLVA 190
Query: 835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVE 889
+ + ++APE + + + D++G G+IL LL+G P +G E + E
Sbjct: 191 GGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPF---YGTKERLFE 242
>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX
Length = 361
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 105/239 (43%), Gaps = 32/239 (13%)
Query: 673 SLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVS 732
S+ D+++ E GK S + + QF VK I+DV T+S P +S
Sbjct: 16 SMADDDVLFEDVYELCEVIGKGPFSVVRRCINRETGQQFAVK-IVDVAKFTSS---PGLS 71
Query: 733 --------QFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS-EVLRNLSWERRRKV 783
++ HP+IV L S+ Y+V+E+++G +L E+++
Sbjct: 72 TEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSE 131
Query: 784 AIG------IAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVPGLAY----- 831
A+ I +ALR+ H +++ DV P V++ K+ ++L G+A
Sbjct: 132 AVASHYMRQILEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGES 188
Query: 832 -CTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVE 889
+ + ++APE + + + D++G G+IL LL+G P +G E + E
Sbjct: 189 GLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPF---YGTKERLFE 244
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 39 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 97
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + D++ +V E HL +++
Sbjct: 98 LRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 151
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 152 DFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 211
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
G+ S V Y D ++ ++ E+M C +P+ R
Sbjct: 212 P---GIDPSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 254
Query: 938 PCASDVTKTLESCFRISS 955
P +++ + E+ F+ SS
Sbjct: 255 PSFAEIHQAFETMFQESS 272
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 53/238 (22%), Positives = 95/238 (39%), Gaps = 39/238 (16%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRR-------KVAIGIA 788
K + HPN+++ + + +V E + +LS ++++ ++R K + +
Sbjct: 87 KQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLC 146
Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS------INSSA 842
AL +H S V+ D+ P V + ++L GL SK+ + +
Sbjct: 147 SALEHMH---SRRVMHRDIKPANVFITATGV--VKLGDLGLGRFFSSKTTAAHSLVGTPY 201
Query: 843 YVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDT 902
Y++PE K DI+ G +L ++ +SP D YS C
Sbjct: 202 YMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD----------KMNLYSLCKKIE 251
Query: 903 WVD--PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISSCVS 958
D P H S E+ +++N+ C DP RP DVT + R+ +C +
Sbjct: 252 QCDYPPLPSDHYSE---ELRQLVNM---CINPDPEKRP---DVTYVYDVAKRMHACTA 300
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 25/187 (13%)
Query: 710 QFVVKKIIDVNTITTSSFWPDVS---QFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
+ V KI+D NT+ S P + + K + H +I +L+ V + ++V EY G
Sbjct: 36 EMVAIKIMDKNTL--GSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVLEYCPGG 93
Query: 767 ELSEVL---RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR 823
EL + + LS E R V I A+ ++H S D+ P ++ D E H +
Sbjct: 94 ELFDYIISQDRLSEEETRVVFRQIVSAVAYVH---SQGYAHRDLKPENLLFD---EYH-K 146
Query: 824 LSVPGLAYCTDSKS---------INSSAYVAPETKESKD-ITEKGDIYGFGLILIDLLTG 873
L + C K S AY APE + K + + D++ G++L L+ G
Sbjct: 147 LKLIDFGLCAKPKGNKDYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCG 206
Query: 874 KSPADAD 880
P D D
Sbjct: 207 FLPFDDD 213
>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
pdb|2VN9|B Chain B, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
Length = 301
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLH 795
+L+ HPNIVRLH E YLV++ + G EL E + + + I + L ++
Sbjct: 58 RLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILESVN 117
Query: 796 FHCSPS-VVAGDVSPGKVIVDGKDE-PHLRLSVPGLAYCTDSKS------INSSAYVAPE 847
HC + +V D+ P +++ K + ++L+ GLA + Y++PE
Sbjct: 118 -HCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGYLSPE 176
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
+ D++ G+IL LL G P
Sbjct: 177 VLRKDPYGKPVDMWACGVILYILLVGYPP 205
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 21/179 (11%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y+V EY+ L +
Sbjct: 60 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTLEPPFYIVTEYMPYGNLLDY 118
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPH-LRLS 825
LR + E V A I+ A+ +L + + D++ +V E H ++++
Sbjct: 119 LRECNREEVTAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHVVKVA 172
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 173 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSP 231
>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent
Protein Kinase Ii Gamma
Length = 336
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 732 SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSWERRRKVAIG-IA 788
++ +L+ HPNIVRLH E YLV++ + G EL E V R E I I
Sbjct: 81 ARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQIL 140
Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLAYCTDSKS------INSS 841
+++ +H H +V D+ P +++ K + ++L+ GLA + +
Sbjct: 141 ESVNHIHQH---DIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTP 197
Query: 842 AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
Y++PE + DI+ G+IL LL G P
Sbjct: 198 GYLSPEVLRKDPYGKPVDIWACGVILYILLVGYPP 232
>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
In With Amp-Pnp
pdb|3KN5|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
In With Amp-Pnp
pdb|3KN6|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
pdb|3KN6|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
Length = 325
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 13/147 (8%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
HPNIV+LH V + +LV E + G EL E + ++ S + + A+ +H
Sbjct: 65 HPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKKKKHFSETEASYIMRKLVSAVSHMH- 123
Query: 797 HCSPSVVAGDVSPGKVI-VDGKDEPHLRLSVPGLAYCT--DSKSINSSA----YVAPETK 849
VV D+ P ++ D D +++ G A D++ + + Y APE
Sbjct: 124 --DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELL 181
Query: 850 ESKDITEKGDIYGFGLILIDLLTGKSP 876
E D++ G+IL +L+G+ P
Sbjct: 182 NQNGYDESCDLWSLGVILYTMLSGQVP 208
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 42 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDY 100
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + D++ +V E HL +++
Sbjct: 101 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 154
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 155 DFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 214
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
G+ S V Y D ++ ++ E+M C +P+ R
Sbjct: 215 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 257
Query: 938 PCASDVTKTLESCFRISS 955
P +++ + E+ F+ SS
Sbjct: 258 PSFAEIHQAFETMFQESS 275
>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 99/214 (46%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
G+ S++ R LA ++ +K I++ I + P V++ ++ HP V+L+
Sbjct: 39 GEGSFSTTVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 97
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
+ ++ Y Y + EL + +R + S++ R I AL +LH ++
Sbjct: 98 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 154
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
D+ P ++++ ++ H++++ G A +S + ++ YV+PE K +
Sbjct: 155 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 212
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
D++ G I+ L+ G P A ++ + + I++
Sbjct: 213 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 246
>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human
5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant
(T172d)
pdb|3AQV|A Chain A, Human Amp-Activated Protein Kinase Alpha 2 Subunit Kinase
Domain (T172d) Complexed With Compound C
Length = 276
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 61/221 (27%), Positives = 90/221 (40%), Gaps = 40/221 (18%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL----RNLSWERRRKVAIGIAKAL 791
KL HP+I++L+ V + ++V EY+ G EL + + R E RR I A+
Sbjct: 66 KLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQ-QILSAV 124
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLA-YCTDSK----SINSSAYV 844
+ H H VV D+ P V++D H+ + GL+ +D + S S Y
Sbjct: 125 DYCHRHM---VVHRDLKPENVLLDA----HMNAKIADFGLSNMMSDGEFLRDSCGSPNYA 177
Query: 845 APETKESKDIT-EKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTW 903
APE + + DI+ G+IL LL G P D D H+ T
Sbjct: 178 APEVISGRLYAGPEVDIWSCGVILYALLCGTLPFD------------------DEHVPTL 219
Query: 904 VDPFIRGHVSSIQNEI-VEIMNLALHCTAGDPTARPCASDV 943
IRG V I + + L +H DP R D+
Sbjct: 220 FKK-IRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDI 259
>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated
Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2
Chain)
Length = 276
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 61/221 (27%), Positives = 90/221 (40%), Gaps = 40/221 (18%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL----RNLSWERRRKVAIGIAKAL 791
KL HP+I++L+ V + ++V EY+ G EL + + R E RR I A+
Sbjct: 66 KLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQ-QILSAV 124
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLA-YCTDSK----SINSSAYV 844
+ H H VV D+ P V++D H+ + GL+ +D + S S Y
Sbjct: 125 DYCHRHM---VVHRDLKPENVLLDA----HMNAKIADFGLSNMMSDGEFLRTSCGSPNYA 177
Query: 845 APETKESKDIT-EKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTW 903
APE + + DI+ G+IL LL G P D D H+ T
Sbjct: 178 APEVISGRLYAGPEVDIWSCGVILYALLCGTLPFD------------------DEHVPTL 219
Query: 904 VDPFIRGHVSSIQNEI-VEIMNLALHCTAGDPTARPCASDV 943
IRG V I + + L +H DP R D+
Sbjct: 220 FKK-IRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDI 259
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 42 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 100
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + D++ +V E HL +++
Sbjct: 101 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 154
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 155 DFGLSRLMTGDTYTAPAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 214
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
G+ S V Y D ++ ++ E+M C +P+ R
Sbjct: 215 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 257
Query: 938 PCASDVTKTLESCFRISS 955
P +++ + E+ F+ SS
Sbjct: 258 PSFAEIHQAFETMFQESS 275
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 43 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 101
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + D++ +V E HL +++
Sbjct: 102 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 155
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 156 DFGLSRLMTGDTYTAPAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 215
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
G+ S V Y D ++ ++ E+M C +P+ R
Sbjct: 216 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 258
Query: 938 PCASDVTKTLESCFRISS 955
P +++ + E+ F+ SS
Sbjct: 259 PSFAEIHQAFETMFQESS 276
>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk
Length = 476
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 18/156 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE-VLRN--LSWERRRKVAIGIAKALR 792
KL HP+I++L+ V + ++V EY+ G EL + + +N L + R++ I +
Sbjct: 71 KLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVD 130
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSK----SINSSAYVA 845
+ H H VV D+ P V++D H+ + +D + S S Y A
Sbjct: 131 YCHRHM---VVHRDLKPENVLLDA----HMNAKIADFGLSNMMSDGEFLRXSCGSPNYAA 183
Query: 846 PETKESKDIT-EKGDIYGFGLILIDLLTGKSPADAD 880
PE + + DI+ G+IL LL G P D D
Sbjct: 184 PEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDD 219
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 54 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 112
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + D++ +V E HL +++
Sbjct: 113 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 166
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 167 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 226
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
G+ S V Y D ++ ++ E+M C +P+ R
Sbjct: 227 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 269
Query: 938 PCASDVTKTLESCFRISS 955
P +++ + E+ F+ SS
Sbjct: 270 PSFAEIHQAFETMFQESS 287
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 46 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 104
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + D++ +V E HL +++
Sbjct: 105 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 158
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 159 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 218
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
G+ S V Y D ++ ++ E+M C +P+ R
Sbjct: 219 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 261
Query: 938 PCASDVTKTLESCFRISS 955
P +++ + E+ F+ SS
Sbjct: 262 PSFAEIHQAFETMFQESS 279
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 43 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 101
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + D++ +V E HL +++
Sbjct: 102 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 155
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 156 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 215
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
G+ S V Y D ++ ++ E+M C +P+ R
Sbjct: 216 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 258
Query: 938 PCASDVTKTLESCFRISS 955
P +++ + E+ F+ SS
Sbjct: 259 PSFAEIHQAFETMFQESS 276
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 43 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 101
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + D++ +V E HL +++
Sbjct: 102 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 155
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 156 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 215
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
G+ S V Y D ++ ++ E+M C +P+ R
Sbjct: 216 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 258
Query: 938 PCASDVTKTLESCFRISS 955
P +++ + E+ F+ SS
Sbjct: 259 PSFAEIHQAFETMFQESS 276
>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat
Length = 332
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 18/186 (9%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRR---KVAIGIAKALRFL 794
I HPNIV L + S YL+ + + G EL + + + R ++ + A+++L
Sbjct: 73 IKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYL 132
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEP-HLRLSVPGLAYCTDSKSINSSA-----YVAPET 848
H +V D+ P ++ DE + +S GL+ D S+ S+A YVAPE
Sbjct: 133 H---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEV 189
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVD- 905
K ++ D + G+I LL G P + D + E I++ A Y + + D D
Sbjct: 190 LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILK-AEYEFDSPYWDDISDS 248
Query: 906 --PFIR 909
FIR
Sbjct: 249 AKDFIR 254
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 41 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDY 99
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + D++ +V E HL +++
Sbjct: 100 LRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 153
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 154 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 213
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
G+ S V Y D ++ ++ E+M C +P+ R
Sbjct: 214 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 256
Query: 938 PCASDVTKTLESCFRISS 955
P +++ + E+ F+ SS
Sbjct: 257 PSFAEIHQAFETMFQESS 274
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 41 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDY 99
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + D++ +V E HL +++
Sbjct: 100 LRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 153
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 154 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 213
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
G+ S V Y D ++ ++ E+M C +P+ R
Sbjct: 214 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 256
Query: 938 PCASDVTKTLESCFRISS 955
P +++ + E+ F+ SS
Sbjct: 257 PSFAEIHQAFETMFQESS 274
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Query: 715 KIIDVNTITTSS----FWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE 770
KII +++TT+S +V+ K + HPNI++L+ ++ YLV E G EL +
Sbjct: 35 KIIKKSSVTTTSNSGALLDEVAVL-KQLDHPNIMKLYEFFEDKRNYYLVMEVYRGGELFD 93
Query: 771 --VLRNLSWERRRKVAIG-IAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLSV 826
+LR E V + + +LH H ++V D+ P ++++ K L ++
Sbjct: 94 EIILRQKFSEVDAAVIMKQVLSGTTYLHKH---NIVHRDLKPENLLLESKSRDALIKIVD 150
Query: 827 PGLAYCTD-----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
GL+ + + + ++ Y+APE K EK D++ G+IL LL G P
Sbjct: 151 FGLSAHFEVGGKMKERLGTAYYIAPEVLRKK-YDEKCDVWSCGVILYILLCGYPP 204
>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mgatp)
pdb|3REP|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mnatp)
Length = 271
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 63/260 (24%), Positives = 117/260 (45%), Gaps = 31/260 (11%)
Query: 700 YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAY-- 757
+K R ND+ V K+ D +T + F + + ++ HPN++ + G C+S A +
Sbjct: 27 WKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRL-RIFSHPNVLPVLGACQSPPAPHPT 85
Query: 758 LVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKV 812
L+ ++ L VL + + K A+ +A+ + FLH P + ++ V
Sbjct: 86 LITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH-TLEPLIPRHALNSRSV 144
Query: 813 IVDGKDEPHLRLSVPGLAYCTDSKS-INSSAYVAPET--KESKDITEK-GDIYGFGLILI 868
++D ++ R+S+ + + S + + A+VAPE K+ +D + D++ F ++L
Sbjct: 145 MID--EDMTARISMADVKFSFQSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLW 202
Query: 869 DLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALH 928
+L+T + P AD E ++ A L + P I HVS ++M +
Sbjct: 203 ELVTREVPF-ADLSNMEIGMKVALE-----GLRPTIPPGISPHVS-------KLMKI--- 246
Query: 929 CTAGDPTARPCASDVTKTLE 948
C DP RP + LE
Sbjct: 247 CMNEDPAKRPKFDMIVPILE 266
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 110/259 (42%), Gaps = 40/259 (15%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 245 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 303
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + +++ +V E HL +++
Sbjct: 304 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLV---GENHLVKVA 357
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 358 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 417
Query: 878 DA-DFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTA 936
D ++E D ++ ++ E+M C +P+
Sbjct: 418 PGIDLSQVYELLE------KDYRME---------RPEGCPEKVYELMRA---CWQWNPSD 459
Query: 937 RPCASDVTKTLESCFRISS 955
RP +++ + E+ F+ SS
Sbjct: 460 RPSFAEIHQAFETMFQESS 478
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 41 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 99
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + D++ +V E HL +++
Sbjct: 100 LRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 153
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 154 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 213
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
G+ S V Y D ++ ++ E+M C +P+ R
Sbjct: 214 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 256
Query: 938 PCASDVTKTLESCFRISS 955
P +++ + E+ F+ SS
Sbjct: 257 PSFAEIHQAFETMFQESS 274
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 41 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 99
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + D++ +V E HL +++
Sbjct: 100 LRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 153
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 154 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 213
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
G+ S V Y D ++ ++ E+M C +P+ R
Sbjct: 214 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 256
Query: 938 PCASDVTKTLESCFRISS 955
P +++ + E+ F+ SS
Sbjct: 257 PSFAEIHQAFETMFQESS 274
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 46 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 104
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + D++ +V E HL +++
Sbjct: 105 LRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 158
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 159 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 218
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
G+ S V Y D ++ ++ E+M C +P+ R
Sbjct: 219 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 261
Query: 938 PCASDVTKTLESCFRISS 955
P +++ + E+ F+ SS
Sbjct: 262 PSFAEIHQAFETMFQESS 279
>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|B Chain B, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|C Chain C, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|D Chain D, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2CKE|A Chain A, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|B Chain B, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|C Chain C, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|D Chain D, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
Length = 321
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 13/155 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
+ ++H N++ LH V + L+ E + G EL + L +LS E I +
Sbjct: 70 RQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVN 129
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKD--EPHLRLSVPGLAYCTDS----KSI-NSSAYVA 845
+LH + + D+ P +++ K+ PH++L GLA+ + K+I + +VA
Sbjct: 130 YLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVA 186
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
PE + + + D++ G+I LL+G SP D
Sbjct: 187 PEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD 221
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 130/297 (43%), Gaps = 39/297 (13%)
Query: 124 GPV-PIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSL 182
GPV P L ++ S+ L K+P+++ + L LDL N + N+ +L
Sbjct: 22 GPVCPFRCQCHLRVVQCSDLGLE-KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNL 78
Query: 183 QIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG 242
L +N++ P L L+ +YL N L E+P+++
Sbjct: 79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP----------------- 120
Query: 243 QIPPSFGNLSNLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDNYL-SGEIPEEVIQ-L 299
L+ L +++N++T + KS+ GL ++ +L N L S I Q +
Sbjct: 121 ---------KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 300 QNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNF 359
+ L + + N T IP L P L L L N+ + ++L NNL + LS N
Sbjct: 171 KKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227
Query: 360 LTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEF 416
++ +L ++ L +L L +N L K+P L+ K ++ V L NN +S S++F
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 109/246 (44%), Gaps = 19/246 (7%)
Query: 219 EIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSL 278
++PK++ T+L LDL N +T F NL NL L L NK++ P + L L
Sbjct: 45 KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 279 VSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSG 338
LS N L E+PE++ + L+ L + N T S + ++ V++L +N
Sbjct: 103 ERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 339 EIPSNLGKQ--NNLTVIDLS-TNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTC 395
N Q L+ I ++ TN T IP+ L SL +L L N + SL
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNITT--IPQGL--PPSLTELHLDGNKITKVDAASLKGL 215
Query: 396 KSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDL---SGRIGEQKWEMTSLQMLNLA 452
+L ++ L N +S + P + L ++ N L G + + K+ +Q++ L
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY----IQVVYLH 271
Query: 453 GNNFSG 458
NN S
Sbjct: 272 NNNISA 277
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 100/241 (41%), Gaps = 10/241 (4%)
Query: 315 KIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSL 374
K+P L P +L L +N+ + + NL + L N ++ P L
Sbjct: 45 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 375 FKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDL-- 432
+L L N L+ ++P + K+L+ +R+ N ++ S F L + +++ N L
Sbjct: 103 ERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 433 SGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSE 492
SG M L + +A N + +P L L L N+ + S L+
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGL-PPSLTELHLDGNKITKVDAASLKGLNN 217
Query: 493 LMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLS 552
L +L +S N + L++ L L L+NN+L +P L++ + + L N +S
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276
Query: 553 G 553
Sbjct: 277 A 277
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 3/114 (2%)
Query: 472 LDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHI 531
LDL N+ + F L L L + NK+ P + KL L LS NQL +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 532 PASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAF 585
P + + L +L + EN+++ + ++ V + N S GAF
Sbjct: 116 PEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
Length = 284
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 10/148 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+R++ K YL+ E+ EL + L+ ++ A + + LH+
Sbjct: 71 LRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYC 130
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
V+ D+ P +++ K E L + + + S+ Y+ PE E
Sbjct: 131 HERKVIHRDIKPENLLMGYKGE----LKIADFGWSVHAPSLRRRXMCGTLDYLPPEMIEG 186
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADA 879
K EK D++ G++ + L G P D+
Sbjct: 187 KTHDEKVDLWCAGVLCYEFLVGMPPFDS 214
>pdb|2BFX|A Chain A, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2BFX|B Chain B, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2VGP|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGP|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGO|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|2VGO|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|3ZTX|A Chain A, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen.
pdb|3ZTX|B Chain B, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen
Length = 284
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 10/148 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+R++ K YL+ E+ EL + L+ ++ A + + LH+
Sbjct: 71 LRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYC 130
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
V+ D+ P +++ K E L + + + S+ Y+ PE E
Sbjct: 131 HERKVIHRDIKPENLLMGYKGE----LKIADFGWSVHAPSLRRRXMCGTLDYLPPEMIEG 186
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADA 879
K EK D++ G++ + L G P D+
Sbjct: 187 KTHDEKVDLWCAGVLCYEFLVGMPPFDS 214
>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439
pdb|2VRX|B Chain B, Structure Of Aurora B Kinase In Complex With Zm447439
Length = 285
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 10/148 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNI+R++ K YL+ E+ EL + L+ ++ A + + LH+
Sbjct: 72 LRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYC 131
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
V+ D+ P +++ K E L + + + S+ Y+ PE E
Sbjct: 132 HERKVIHRDIKPENLLMGYKGE----LKIADFGWSVHAPSLRRRXMCGTLDYLPPEMIEG 187
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADA 879
K EK D++ G++ + L G P D+
Sbjct: 188 KTHDEKVDLWCAGVLCYEFLVGMPPFDS 215
>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|E Chain E, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|C Chain C, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|B Chain B, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|F Chain F, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|D Chain D, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|H Chain H, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|G Chain G, Human Death-Associated Kinase Drp-1, Mutant S308d D40
Length = 321
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
+ ++H N++ LH V + L+ E + G EL + L +LS E I +
Sbjct: 70 RQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVN 129
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKD--EPHLRLSVPGLAYCTDS----KSI-NSSAYVA 845
+LH + + D+ P +++ K+ PH++L GLA+ + K+I + +VA
Sbjct: 130 YLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVA 186
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
PE + + + D++ G+I LL+G SP
Sbjct: 187 PEIVNYEPLGLEADMWSIGVITYILLSGASP 217
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 21/179 (11%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 46 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDY 104
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + D++ +V E HL +++
Sbjct: 105 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 158
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 159 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP 217
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 69/158 (43%), Gaps = 7/158 (4%)
Query: 419 LPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLD---LS 475
LP V +L + GN L I K E+T+L L L GN LP+ D+L NL L
Sbjct: 62 LPNVRYLALGGNKLHD-ISALK-ELTNLTYLILTGNQLQS-LPNGV-FDKLTNLKELVLV 117
Query: 476 ENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASL 535
EN+ F +L+ L L + N+L L LDL NNQL
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVF 177
Query: 536 SEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHN 573
++ L QL L++NQL R+ SL + + +N
Sbjct: 178 DKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 200 IGQLRNLKWIYLGYNNLSGEIPKEIGD-LTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLF 258
+ +L NL ++ L N L +P + D LT+L L LV N L F L+NL YL+
Sbjct: 81 LKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 259 LYQNKLTGSIPKSILG-LKSLVSFDLSDNYLSGEIPEEVI-QLQNLEILHLFSNNF 312
LY N+L S+PK + L +L DL +N L +PE V +L L+ L L N
Sbjct: 140 LYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQL 193
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 152 IGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREI-GQLRNLKWIY 210
+ + L L L GN L +T+L+ L NQL S+P + +L NL ++Y
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLY 139
Query: 211 LGYNNLSGEIPKEIGD-LTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIP 269
L +N L +PK + D LT+L LDL N L F L+ L+ L L N+L S+P
Sbjct: 140 LYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL-KSVP 197
Query: 270 KSIL 273
+
Sbjct: 198 DGVF 201
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 10/163 (6%)
Query: 152 IGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREI-GQLRNLKWIY 210
I ++ L LGGN L +I ++ +T+L L NQL S+P + +L NLK +
Sbjct: 59 IQYLPNVRYLALGGNKL-HDIS-ALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELV 115
Query: 211 LGYNNLSGEIPKEIGD-LTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIP 269
L N L +P + D LT+L +L L +N L F L+NL L L N+L S+P
Sbjct: 116 LVENQLQS-LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLP 173
Query: 270 KSILG-LKSLVSFDLSDNYLSGEIPEEVI-QLQNLEILHLFSN 310
+ + L L L+DN L +P+ V +L +L + L +N
Sbjct: 174 EGVFDKLTQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWLLNN 215
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 92/221 (41%), Gaps = 53/221 (23%)
Query: 187 LASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP 246
+A+N I S+ + I L N++++ LG N L + +LT+L +L L N L
Sbjct: 47 IANNSDIKSV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNG 103
Query: 247 SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILH 306
F L+NL+ L L +N+L S+P + FD +L NL L+
Sbjct: 104 VFDKLTNLKELVLVENQLQ-SLPDGV--------FD---------------KLTNLTYLY 139
Query: 307 LFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPE 366
L+ N L S+PK K NLT +DL N L +PE
Sbjct: 140 LYHN--------QLQSLPK----------------GVFDKLTNLTRLDLDNNQLQS-LPE 174
Query: 367 TLCDSGSLFKLILFSNSLEGKIPNSL-STCKSLRRVRLQNN 406
+ D + K + +++ +P+ + SL + L NN
Sbjct: 175 GVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 21/179 (11%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 46 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 104
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + D++ +V E HL +++
Sbjct: 105 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 158
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 159 DFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP 217
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 287 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 345
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + +++ +V E HL +++
Sbjct: 346 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLV---GENHLVKVA 399
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 400 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 459
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
G+ S V Y D ++ ++ E+M C +P+ R
Sbjct: 460 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 502
Query: 938 PCASDVTKTLESCFRISS 955
P +++ + E+ F+ SS
Sbjct: 503 PSFAEIHQAFETMFQESS 520
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 21/179 (11%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 46 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 104
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + D++ +V E HL +++
Sbjct: 105 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 158
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 159 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP 217
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 21/179 (11%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 41 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 99
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + D++ +V E HL +++
Sbjct: 100 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 153
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 154 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP 212
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 21/179 (11%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 45 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 103
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + D++ +V E HL +++
Sbjct: 104 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 157
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 158 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP 216
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 21/179 (11%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 41 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 99
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + D++ +V E HL +++
Sbjct: 100 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 153
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 154 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP 212
>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From
Toxoplasma Gondii, 541.m00134, Kinase Domain
Length = 287
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 16/174 (9%)
Query: 715 KIIDVNTITTSS---FWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE- 770
KII +++TT+S D K + HPNI++L+ ++ YLV E G EL +
Sbjct: 52 KIIKKSSVTTTSNSGALLDEVAVLKQLDHPNIMKLYEFFEDKRNYYLVMEVYRGGELFDE 111
Query: 771 -VLRNLSWERRRKVAIG-IAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLSVP 827
+LR E V + + +LH H ++V D+ P ++++ K L ++
Sbjct: 112 IILRQKFSEVDAAVIMKQVLSGTTYLHKH---NIVHRDLKPENLLLESKSRDALIKIVDF 168
Query: 828 GLAYCTD-----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
GL+ + + + ++ Y+APE K EK D++ G+IL LL G P
Sbjct: 169 GLSAHFEVGGKMKERLGTAYYIAPEVLRKK-YDEKCDVWSCGVILYILLCGYPP 221
>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And
Potent Inhibitors For Akt: Synthesis And Sar Studies
Length = 337
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 88 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 145
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D ++ +++++ G A ++ + Y+APE SK
Sbjct: 146 -SLDLIYRDLKPENLLID--EQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 202
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 203 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 238
>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form
pdb|3C0G|B Chain B, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form
pdb|3C0H|A Chain A, Cask Cam-Kinase Domain- Amppnp Complex, P1 Form
pdb|3C0H|B Chain B, Cask Cam-Kinase Domain- Amppnp Complex, P1 Form
pdb|3C0I|A Chain A, Cask Cam-Kinase Domain- 3'-Amp Complex, P212121 Form
Length = 351
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 103/235 (43%), Gaps = 32/235 (13%)
Query: 677 DEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVS---- 732
D+++ E GK S + + QF VK I+DV T+S P +S
Sbjct: 18 DDVLFEDVYELCEVIGKGPFSVVRRCINRETGQQFAVK-IVDVAKFTSS---PGLSTEDL 73
Query: 733 ----QFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS-EVLRNLSWERRRKVAIG- 786
++ HP+IV L S+ Y+V+E+++G +L E+++ A+
Sbjct: 74 KREASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVAS 133
Query: 787 -----IAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVPGLAY------CTD 834
I +ALR+ H +++ DV P V++ K+ ++L G+A
Sbjct: 134 HYMRQILEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVA 190
Query: 835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVE 889
+ + ++APE + + + D++G G+IL LL+G P +G E + E
Sbjct: 191 GGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPF---YGTKERLFE 242
>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
pdb|1Z9X|B Chain B, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
pdb|1Z9X|C Chain C, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
Length = 321
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
+ ++H N++ LH V + L+ E + G EL + L +LS E I +
Sbjct: 70 RQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVN 129
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKD--EPHLRLSVPGLAYCTDS----KSI-NSSAYVA 845
+LH + + D+ P +++ K+ PH++L GLA+ + K+I + +VA
Sbjct: 130 YLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVA 186
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
PE + + + D++ G+I LL+G SP
Sbjct: 187 PEIVNYEPLGLEADMWSIGVITYILLSGASP 217
>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|B Chain B, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|C Chain C, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|D Chain D, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|E Chain E, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|F Chain F, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|G Chain G, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|H Chain H, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
Length = 321
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
+ ++H N++ LH V + L+ E + G EL + L +LS E I +
Sbjct: 70 RQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVN 129
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKD--EPHLRLSVPGLAYCTDS----KSI-NSSAYVA 845
+LH + + D+ P +++ K+ PH++L GLA+ + K+I + +VA
Sbjct: 130 YLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVA 186
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
PE + + + D++ G+I LL+G SP
Sbjct: 187 PEIVNYEPLGLEADMWSIGVITYILLSGASP 217
>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|C Chain C, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|D Chain D, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|E Chain E, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|F Chain F, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|G Chain G, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|H Chain H, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
Length = 288
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
+ ++H N++ LH V + L+ E + G EL + L +LS E I +
Sbjct: 70 RQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVN 129
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKD--EPHLRLSVPGLAYCTDS----KSI-NSSAYVA 845
+LH + + D+ P +++ K+ PH++L GLA+ + K+I + +VA
Sbjct: 130 YLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVA 186
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
PE + + + D++ G+I LL+G SP
Sbjct: 187 PEIVNYEPLGLEADMWSIGVITYILLSGASP 217
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 11/236 (4%)
Query: 184 IFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQ 243
+ L +N++ + L+NL + L N +S P L L L L N L +
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 114
Query: 244 IPPSFGNLSNLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDNYL-SGEIPEEVIQ-LQ 300
+P L+ L +++N++T + KS+ GL ++ +L N L S I Q ++
Sbjct: 115 LPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 301 NLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFL 360
L + + N T IP L P L L L N+ + ++L NNL + LS N +
Sbjct: 172 KLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 361 TGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEF 416
+ +L ++ L +L L +N L K+P L+ K ++ V L NN +S S++F
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 109/246 (44%), Gaps = 19/246 (7%)
Query: 219 EIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSL 278
++PK++ T+L LDL N +T F NL NL L L NK++ P + L L
Sbjct: 45 KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 279 VSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSG 338
LS N L E+PE++ + L+ L + N T S + ++ V++L +N
Sbjct: 103 ERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 339 EIPSNLGKQ--NNLTVIDLS-TNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTC 395
N Q L+ I ++ TN T IP+ L SL +L L N + SL
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNITT--IPQGL--PPSLTELHLDGNKITKVDAASLKGL 215
Query: 396 KSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDL---SGRIGEQKWEMTSLQMLNLA 452
+L ++ L N +S + P + L ++ N L G + + K+ +Q++ L
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY----IQVVYLH 271
Query: 453 GNNFSG 458
NN S
Sbjct: 272 NNNISA 277
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 100/241 (41%), Gaps = 10/241 (4%)
Query: 315 KIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSL 374
K+P L P +L L +N+ + + NL + L N ++ P L
Sbjct: 45 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 375 FKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDL-- 432
+L L N L+ ++P + K+L+ +R+ N ++ S F L + +++ N L
Sbjct: 103 ERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 433 SGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSE 492
SG M L + +A N + +P L L L N+ + S L+
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGL-PPSLTELHLDGNKITKVDAASLKGLNN 217
Query: 493 LMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLS 552
L +L +S N + L++ L L L+NN+L +P L++ + + L N +S
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276
Query: 553 G 553
Sbjct: 277 A 277
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 3/114 (2%)
Query: 472 LDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHI 531
LDL N+ + F L L L + NK+ P + KL L LS NQL +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 532 PASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAF 585
P + + L +L + EN+++ + ++ V + N S GAF
Sbjct: 116 PEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
pdb|3DAE|B Chain B, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
Length = 283
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 22/185 (11%)
Query: 710 QFVVKKIIDVNTITTSSFWPDVSQ---FGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
Q V KII+ + S + + + +L+ HP+I++L+ V +S+ +V EY G
Sbjct: 40 QKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEY-AGN 98
Query: 767 ELSEVL---RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR 823
EL + + +S + R+ I A+ + H H +V D+ P +++D HL
Sbjct: 99 ELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLD----EHLN 151
Query: 824 LSVP--GLA-YCTDSKSINSSA----YVAPETKESKDIT-EKGDIYGFGLILIDLLTGKS 875
+ + GL+ TD + +S Y APE K + D++ G+IL +L +
Sbjct: 152 VKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRL 211
Query: 876 PADAD 880
P D +
Sbjct: 212 PFDDE 216
>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka
C-Subunit:amp-Pnp:mg2+ Complex
Length = 350
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +I+D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLIID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIIISKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
pdb|1S9I|B Chain B, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
Length = 354
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFH 797
P IV +G S+ + E+++G L +VL+ + E KV+I + + L +L
Sbjct: 74 PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLRE- 132
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKS-INSSAYVAPETKESKDIT 855
++ DV P ++V+ + E L V G + + S + + +Y+APE + +
Sbjct: 133 -KHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMAPERLQGTHYS 191
Query: 856 EKGDIYGFGLILIDLLTGKSP 876
+ DI+ GL L++L G+ P
Sbjct: 192 VQSDIWSMGLSLVELAVGRYP 212
>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
pdb|3HYH|B Chain B, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
Length = 275
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 22/185 (11%)
Query: 710 QFVVKKIIDVNTITTSSFWPDVSQ---FGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
Q V KII+ + S + + + +L+ HP+I++L+ V +S+ +V EY G
Sbjct: 39 QKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEY-AGN 97
Query: 767 ELSEVL---RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR 823
EL + + +S + R+ I A+ + H H +V D+ P +++D HL
Sbjct: 98 ELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLD----EHLN 150
Query: 824 LSVPGLAY---CTDSKSINSSA----YVAPETKESKDIT-EKGDIYGFGLILIDLLTGKS 875
+ + TD + +S Y APE K + D++ G+IL +L +
Sbjct: 151 VKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRL 210
Query: 876 PADAD 880
P D +
Sbjct: 211 PFDDE 215
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 110/259 (42%), Gaps = 40/259 (15%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + +T+ F + + K I HPN+V+L GVC E Y++ E++ L +
Sbjct: 248 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 306
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
LR + + V A I+ A+ +L + + +++ +V E HL +++
Sbjct: 307 LRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLV---GENHLVKVA 360
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
GL+ + + A + APE+ + K D++ FG++L ++ T G SP
Sbjct: 361 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 420
Query: 878 DA-DFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTA 936
D ++E D ++ ++ E+M C +P+
Sbjct: 421 PGIDLSQVYELLE------KDYRME---------RPEGCPEKVYELMRA---CWQWNPSD 462
Query: 937 RPCASDVTKTLESCFRISS 955
RP +++ + E+ F+ SS
Sbjct: 463 RPSFAEIHQAFETMFQESS 481
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 127/284 (44%), Gaps = 71/284 (25%)
Query: 57 CQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIXXXXXXXXXXX 116
+N T++N +ELS+ IS S++ L ++ ++ SSNQ+
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQV------------------- 163
Query: 117 XXXXXXTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSI 176
T P+ +L+ LE LD+S+N KV D+ +
Sbjct: 164 ------TDLKPLANLTTLERLDISSN----------------KVSDIS----------VL 191
Query: 177 SNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIG---DLTSLNHL 233
+ +T+L+ +NQ+ P +G L NL + L N L K+IG LT+L L
Sbjct: 192 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDL 244
Query: 234 DLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIP 293
DL N ++ P L+ L L L N+++ P + GL +L + +L++N L P
Sbjct: 245 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Query: 294 EEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFS 337
+ L+NL L L+ NN + P ++S+ KLQ L +N+ S
Sbjct: 301 --ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVS 340
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 113/258 (43%), Gaps = 45/258 (17%)
Query: 348 NNLTVIDLSTNFLTGKIP--------------------ETLCDSGSLFKLILFSNSLEGK 387
NNLT I+ S N LT P L + +L L LF+N +
Sbjct: 63 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 122
Query: 388 IPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQ 447
P L +L R+ L +N +S S + L + L S N ++ + +T+L+
Sbjct: 123 DP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDL--KPLANLTTLE 176
Query: 448 MLNLAGNNFS-----GKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNK 502
L+++ N S KL + LE+L + N+ S P G L+ L +L ++ N+
Sbjct: 177 RLDISSNKVSDISVLAKLTN------LESLIATNNQISDITP--LGILTNLDELSLNGNQ 228
Query: 503 LFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRV 562
L DI L+S L LDL+NNQ+S P LS + L +L L NQ+S P L +
Sbjct: 229 L-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 282
Query: 563 ASLVQVNISHNHFHGSLP 580
+L + ++ N P
Sbjct: 283 TALTNLELNENQLEDISP 300
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 10/142 (7%)
Query: 128 IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTL 187
+ SL+ L LDL+NN +S P + + L L LG N + PL + +T+L L
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL--AGLTALTNLEL 290
Query: 188 ASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS 247
NQL P I L+NL ++ L +NN+S P + LT L L NN + S
Sbjct: 291 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFSNNKVSDV-SS 344
Query: 248 FGNLSNLRYLFLYQNKLTGSIP 269
NL+N+ +L N+++ P
Sbjct: 345 LANLTNINWLSAGHNQISDLTP 366
>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
pdb|2JC6|C Chain C, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
Length = 334
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 89/210 (42%), Gaps = 13/210 (6%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLH 795
+ I H NIV L + S YLV + + G EL + + + + + I + L ++
Sbjct: 75 RKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVY 134
Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEP-HLRLSVPGLAYCTDSKSINSSA-----YVAPETK 849
+ +V D+ P ++ +DE + +S GL+ + S+A YVAPE
Sbjct: 135 YLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVL 194
Query: 850 ESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVD-- 905
K ++ D + G+I LL G P + D + E I++ A Y + + D D
Sbjct: 195 AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILK-AEYEFDSPYWDDISDSA 253
Query: 906 -PFIRGHVSSIQNEIVEIMNLALH-CTAGD 933
FIR + N+ A H AGD
Sbjct: 254 KDFIRNLMEKDPNKRYTCEQAARHPWIAGD 283
>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast
Snf1
Length = 274
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 22/185 (11%)
Query: 710 QFVVKKIIDVNTITTSSFWPDVSQ---FGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
Q V KII+ + S + + + +L+ HP+I++L+ V +S+ +V EY G
Sbjct: 34 QKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEY-AGN 92
Query: 767 ELSEVL---RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR 823
EL + + +S + R+ I A+ + H H +V D+ P +++D HL
Sbjct: 93 ELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLD----EHLN 145
Query: 824 LSVPGLAY---CTDSKSINSSA----YVAPETKESKDIT-EKGDIYGFGLILIDLLTGKS 875
+ + TD + +S Y APE K + D++ G+IL +L +
Sbjct: 146 VKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRL 205
Query: 876 PADAD 880
P D +
Sbjct: 206 PFDDE 210
>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps171 Bound To The Pif-Pocket
pdb|4AW0|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps182 Bound To The Pif-Pocket
Length = 311
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 91/202 (45%), Gaps = 20/202 (9%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
G+ S+ R LA ++ +K I++ I + P V++ ++ HP V+L+
Sbjct: 41 GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 99
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
+ ++ Y Y + EL + +R + S++ R I AL +LH ++
Sbjct: 100 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 156
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
D+ P ++++ ++ H++++ G A +S + ++ YV+PE K +
Sbjct: 157 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSAXKS 214
Query: 858 GDIYGFGLILIDLLTGKSPADA 879
D++ G I+ L+ G P A
Sbjct: 215 SDLWALGCIIYQLVAGLPPFRA 236
>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of
The Saccharomyces Cerevisiae Ampk Homolog Snf1
Length = 271
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 22/185 (11%)
Query: 710 QFVVKKIIDVNTITTSSFWPDVSQ---FGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
Q V KII+ + S + + + +L+ HP+I++L+ V +S+ +V EY G
Sbjct: 30 QKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEY-AGN 88
Query: 767 ELSEVL---RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR 823
EL + + +S + R+ I A+ + H H +V D+ P +++D HL
Sbjct: 89 ELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLD----EHLN 141
Query: 824 LSVPGLAY---CTDSKSINSSA----YVAPETKESKDIT-EKGDIYGFGLILIDLLTGKS 875
+ + TD + +S Y APE K + D++ G+IL +L +
Sbjct: 142 VKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRL 201
Query: 876 PADAD 880
P D +
Sbjct: 202 PFDDE 206
>pdb|1Z5M|A Chain A, Crystal Structure Of
N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)
Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2-
Dimethylpropanediamide Complexed With Human Pdk1
pdb|2PE0|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
5-Hydroxy-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-1,
3-Dihydro- Indol-2-One Complex
pdb|2PE1|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
{2-Oxo-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-2,
3-Dihydro-1h- Indol-5-Yl}-Urea {bx-517} Complex
pdb|2PE2|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
3-{5-[2-Oxo-5-Ureido-1,
2-Dihydro-Indol-(3z)-Ylidenemethyl]-1h-
Pyrrol-3-Yl}-N-(2-Piperidin-1-Yl-Ethyl)-Benzamide
Complex
Length = 286
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
G+ S+ R LA ++ +K I++ I + P V++ ++ HP V+L+
Sbjct: 16 GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 74
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
+ ++ Y Y + EL + +R + S++ R I AL +LH ++
Sbjct: 75 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 131
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
D+ P ++++ ++ H++++ G A +S + ++ YV+PE K +
Sbjct: 132 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 189
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
D++ G I+ L+ G P A ++ + + I++
Sbjct: 190 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 223
>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain
Length = 310
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
G+ S+ R LA ++ +K I++ I + P V++ ++ HP V+L+
Sbjct: 39 GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 97
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
+ ++ Y Y + EL + +R + S++ R I AL +LH ++
Sbjct: 98 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 154
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
D+ P ++++ ++ H++++ G A +S + ++ YV+PE K +
Sbjct: 155 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANAFVGTAQYVSPELLTEKSACKS 212
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
D++ G I+ L+ G P A ++ + + I++
Sbjct: 213 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 246
>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ly333531
pdb|1UU7|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-2
pdb|1UU8|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-1
pdb|1OKY|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Staurosporine
pdb|1OKZ|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ucn-01
Length = 310
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
G+ S+ R LA ++ +K I++ I + P V++ ++ HP V+L+
Sbjct: 39 GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 97
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
+ ++ Y Y + EL + +R + S++ R I AL +LH ++
Sbjct: 98 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 154
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
D+ P ++++ ++ H++++ G A +S + ++ YV+PE K +
Sbjct: 155 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 212
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
D++ G I+ L+ G P A ++ + + I++
Sbjct: 213 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 246
>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-3
Length = 286
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
G+ S+ R LA ++ +K I++ I + P V++ ++ HP V+L+
Sbjct: 18 GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 76
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
+ ++ Y Y + EL + +R + S++ R I AL +LH ++
Sbjct: 77 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 133
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
D+ P ++++ ++ H++++ G A +S + ++ YV+PE K +
Sbjct: 134 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 191
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
D++ G I+ L+ G P A ++ + + I++
Sbjct: 192 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 225
>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1
Catalytic Domain
pdb|1UVR|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-8
Length = 289
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
G+ S+ R LA ++ +K I++ I + P V++ ++ HP V+L+
Sbjct: 19 GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 77
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
+ ++ Y Y + EL + +R + S++ R I AL +LH ++
Sbjct: 78 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 134
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
D+ P ++++ ++ H++++ G A +S + ++ YV+PE K +
Sbjct: 135 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 192
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
D++ G I+ L+ G P A ++ + + I++
Sbjct: 193 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 226
>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
G+ S+ R LA ++ +K I++ I + P V++ ++ HP V+L+
Sbjct: 41 GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 99
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
+ ++ Y Y + EL + +R + S++ R I AL +LH ++
Sbjct: 100 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 156
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
D+ P ++++ ++ H++++ G A +S + ++ YV+PE K +
Sbjct: 157 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 214
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
D++ G I+ L+ G P A ++ + + I++
Sbjct: 215 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 248
>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through
Fragment-Based Lead Discovery
pdb|3RWQ|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
G+ S+ R LA ++ +K I++ I + P V++ ++ HP V+L+
Sbjct: 41 GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 99
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
+ ++ Y Y + EL + +R + S++ R I AL +LH ++
Sbjct: 100 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 156
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
D+ P ++++ ++ H++++ G A +S + ++ YV+PE K +
Sbjct: 157 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 214
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
D++ G I+ L+ G P A ++ + + I++
Sbjct: 215 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 248
>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead
Compound
Length = 292
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
G+ S+ R LA ++ +K I++ I + P V++ ++ HP V+L+
Sbjct: 23 GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 81
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
+ ++ Y Y + EL + +R + S++ R I AL +LH ++
Sbjct: 82 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 138
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
D+ P ++++ ++ H++++ G A +S + ++ YV+PE K +
Sbjct: 139 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 196
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
D++ G I+ L+ G P A ++ + + I++
Sbjct: 197 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 230
>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8
pdb|3NUU|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment11
pdb|3NUY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment17
Length = 286
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
G+ S+ R LA ++ +K I++ I + P V++ ++ HP V+L+
Sbjct: 17 GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 75
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
+ ++ Y Y + EL + +R + S++ R I AL +LH ++
Sbjct: 76 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 132
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
D+ P ++++ ++ H++++ G A +S + ++ YV+PE K +
Sbjct: 133 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 190
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
D++ G I+ L+ G P A ++ + + I++
Sbjct: 191 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 224
>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
pdb|3QC4|B Chain B, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
Length = 314
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
G+ S+ R LA ++ +K I++ I + P V++ ++ HP V+L+
Sbjct: 44 GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 102
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
+ ++ Y Y + EL + +R + S++ R I AL +LH ++
Sbjct: 103 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 159
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
D+ P ++++ ++ H++++ G A +S + ++ YV+PE K +
Sbjct: 160 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 217
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
D++ G I+ L+ G P A ++ + + I++
Sbjct: 218 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 251
>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6
pdb|3NAY|B Chain B, Pdk1 In Complex With Inhibitor Mp6
Length = 311
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
G+ S+ R LA ++ +K I++ I + P V++ ++ HP V+L+
Sbjct: 38 GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 96
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
+ ++ Y Y + EL + +R + S++ R I AL +LH ++
Sbjct: 97 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 153
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
D+ P ++++ ++ H++++ G A +S + ++ YV+PE K +
Sbjct: 154 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 211
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
D++ G I+ L+ G P A ++ + + I++
Sbjct: 212 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 245
>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7
Length = 311
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
G+ S+ R LA ++ +K I++ I + P V++ ++ HP V+L+
Sbjct: 38 GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 96
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
+ ++ Y Y + EL + +R + S++ R I AL +LH ++
Sbjct: 97 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 153
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
D+ P ++++ ++ H++++ G A +S + ++ YV+PE K +
Sbjct: 154 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKS 211
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
D++ G I+ L+ G P A ++ + + I++
Sbjct: 212 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 245
>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
G+ S+ R LA ++ +K I++ I + P V++ ++ HP V+L+
Sbjct: 39 GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 97
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
+ ++ Y Y + EL + +R + S++ R I AL +LH ++
Sbjct: 98 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 154
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
D+ P ++++ ++ H++++ G A +S + ++ YV+PE K +
Sbjct: 155 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 212
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
D++ G I+ L+ G P A ++ + + I++
Sbjct: 213 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 246
>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i
pdb|3QCQ|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-(3-
Amino-1h-Indazol-6-Yl)-N4-Ethyl-2,4-Pyrimidinediamine
pdb|3QCS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-[2-
Amino-6-(4-Morpholinyl)-4-Pyrimidinyl]-1h-Indazol-3-
Amine
pdb|3QCX|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-{2-
Amino-6-[(3r)-3-Methyl-4-Morpholinyl]-4-Pyrimidinyl}-1h-
Indazol-3- Amine
pdb|3QCY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 4-[2-
Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-N-
Phenyl-2- Morpholinecarboxamide
pdb|3QD0|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With (2r,5s)-
1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-6-
Methyl-N- Phenyl-3-Piperidinecarboxamide
pdb|3QD3|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1- Dimethylethyl
{(3r,6s)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-6-Methyl-3-Piperidinyl}carbamate
pdb|3QD4|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1-
Dimethylethyl{(3r,
5r)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-5-Methyl-3-Piperidinyl}carbamate
Length = 312
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
G+ S+ R LA ++ +K I++ I + P V++ ++ HP V+L+
Sbjct: 42 GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 100
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
+ ++ Y Y + EL + +R + S++ R I AL +LH ++
Sbjct: 101 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 157
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
D+ P ++++ ++ H++++ G A +S + ++ YV+PE K +
Sbjct: 158 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 215
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
D++ G I+ L+ G P A ++ + + I++
Sbjct: 216 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 249
>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In
Complex With Compound 9
Length = 311
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
G+ S+ R LA ++ +K I++ I + P V++ ++ HP V+L+
Sbjct: 41 GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 99
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
+ ++ Y Y + EL + +R + S++ R I AL +LH ++
Sbjct: 100 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 156
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
D+ P ++++ ++ H++++ G A +S + ++ YV+PE K +
Sbjct: 157 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 214
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
D++ G I+ L+ G P A ++ + + I++
Sbjct: 215 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 248
>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent
Kinase- 1 (Pdk-1)catalytic Domain Bound To A
Dibenzonaphthyridine Inhibitor
pdb|3ION|A Chain A, Pdk1 In Complex With Compound 8h
Length = 312
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
G+ S+ R LA ++ +K I++ I + P V++ ++ HP V+L+
Sbjct: 42 GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 100
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
+ ++ Y Y + EL + +R + S++ R I AL +LH ++
Sbjct: 101 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 157
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
D+ P ++++ ++ H++++ G A +S + ++ YV+PE K +
Sbjct: 158 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKS 215
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
D++ G I+ L+ G P A ++ + + I++
Sbjct: 216 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 249
>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
pdb|3SLS|B Chain B, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
Length = 304
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFH 797
P IV +G S+ + E+++G L +VL+ + + KV+I + K L +L
Sbjct: 83 PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLRE- 141
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKS-INSSAYVAPETKESKDIT 855
++ DV P ++V+ + E L V G + + S + + +Y++PE + +
Sbjct: 142 -KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYS 200
Query: 856 EKGDIYGFGLILIDLLTGKSP 876
+ DI+ GL L+++ G+ P
Sbjct: 201 VQSDIWSMGLSLVEMAVGRYP 221
>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain
In Complex With Atp
pdb|3HRF|A Chain A, Crystal Structure Of Human Pdk1 Kinase Domain In Complex
With An Allosteric Activator Bound To The Pif-Pocket
pdb|3RCJ|A Chain A, Rapid Preparation Of Triazolyl Substituted Nh-Heterocyclic
Kinase Inhibitors Via One-Pot Sonogashira Coupling
Tms-Deprotection Cuaac Sequence
pdb|4A06|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps114 Bound To The Pif-Pocket
pdb|4AW1|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps210 Bound To The Pif-Pocket
Length = 311
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 91/202 (45%), Gaps = 20/202 (9%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
G+ S+ R LA ++ +K I++ I + P V++ ++ HP V+L+
Sbjct: 41 GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 99
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
+ ++ Y Y + EL + +R + S++ R I AL +LH ++
Sbjct: 100 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 156
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
D+ P ++++ ++ H++++ G A +S + ++ YV+PE K +
Sbjct: 157 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 214
Query: 858 GDIYGFGLILIDLLTGKSPADA 879
D++ G I+ L+ G P A
Sbjct: 215 SDLWALGCIIYQLVAGLPPFRA 236
>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B
(pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3
Peptide
Length = 337
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
HP + L ++ V EY G EL L R + ER R I AL +LH
Sbjct: 64 HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH- 122
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS--------AYVAPET 848
S VV D+ +++D + H++++ GL C + S ++ Y+APE
Sbjct: 123 --SRDVVYRDIKLENLMLDK--DGHIKITDFGL--CKEGISDGATMKXFCGTPEYLAPEV 176
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP 876
E D D +G G+++ +++ G+ P
Sbjct: 177 LEDNDYGRAVDWWGLGVVMYEMMCGRLP 204
>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors
pdb|2UZU|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
pdb|2UZV|A Chain A, Pka Structures Of Indazole-pyridine Series Of Akt
Inhibitors
pdb|2UZW|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
Length = 336
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 87 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 144
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN---SSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 145 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGY 201
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 202 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 237
>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E87|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E88|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E88|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E8D|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E8D|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3D0E|A Chain A, Crystal Structure Of Human Akt2 In Complex With Gsk690693
pdb|3D0E|B Chain B, Crystal Structure Of Human Akt2 In Complex With Gsk690693
Length = 335
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
HP + L ++ V EY G EL L R + ER R I AL +LH
Sbjct: 64 HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH- 122
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS--------AYVAPET 848
S VV D+ +++D + H++++ GL C + S ++ Y+APE
Sbjct: 123 --SRDVVYRDIKLENLMLD--KDGHIKITDFGL--CKEGISDGATMKXFCGTPEYLAPEV 176
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP 876
E D D +G G+++ +++ G+ P
Sbjct: 177 LEDNDYGRAVDWWGLGVVMYEMMCGRLP 204
>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
pdb|4AE6|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
Length = 343
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 94 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 151
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 152 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 208
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 209 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 244
>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 327
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 9/153 (5%)
Query: 732 SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKAL 791
++ +L+ HPNIVRLH E YLV++ + G EL E + + + I + L
Sbjct: 54 ARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQIL 113
Query: 792 RFLHFHCS-PSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLAYCTDSKS------INSSAY 843
++ HC +V D+ P +++ K + ++L+ GLA + Y
Sbjct: 114 ESVN-HCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGY 172
Query: 844 VAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
++PE + D++ G+IL LL G P
Sbjct: 173 LSPEVLRKDPYGKPVDMWACGVILYILLVGYPP 205
>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632
pdb|2GNL|A Chain A, Pka Threefold Mutant Model Of Rho-Kinase With Inhibitor H-
1152p
Length = 350
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIKVADFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%)
Query: 224 IGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDL 283
G L L L+L N LTG P +F S+++ L L +NK+ K LGL L + +L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 284 SDNYLSGEIPEEVIQLQNLEILHLFSNNF 312
DN +S +P L +L L+L SN F
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Query: 487 FGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDL 546
FGRL L++L++ RN+L G P + L L N++ + L L+L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 547 SENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGNDLCGGDSTSG 606
+NQ+S +P + + SL +N++ N F + LA A + L GG + G
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPF-----NCNCHLAWFAEWLRKKSLNGGAARCG 164
Query: 607 LP 608
P
Sbjct: 165 AP 166
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 219 EIPKEIGDLTSLNHLDLVYN-NLTGQIPPS--FGNLSNLRYLFLYQNKLTGSIPKSILGL 275
EIP++I L+ +L+ N N G+I FG L +L L L +N+LTG P + G
Sbjct: 22 EIPRDI----PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77
Query: 276 KSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQ 335
+ L +N + + + L L+ L+L+ N + +P S + L L L SN
Sbjct: 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137
Query: 336 FS 337
F+
Sbjct: 138 FN 139
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 200 IGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFL 259
G+L +L + L N L+G P + + L L N + F L L+ L L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 260 YQNKLTGSIPKSILGLKSLVSFDLSDN 286
Y N+++ +P S L SL S +L+ N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain
Length = 335
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
HP + L ++ V EY G EL L R + ER R I AL +LH
Sbjct: 64 HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH- 122
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS--------AYVAPET 848
S VV D+ +++D + H++++ GL C + S ++ Y+APE
Sbjct: 123 --SRDVVYRDIKLENLMLD--KDGHIKITDFGL--CKEGISDGATMKTFCGTPEYLAPEV 176
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP 876
E D D +G G+++ +++ G+ P
Sbjct: 177 LEDNDYGRAVDWWGLGVVMYEMMCGRLP 204
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
G+ S+ R LA ++ +K I++ I + P V++ ++ HP V+L+
Sbjct: 46 GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 104
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
+ ++ Y Y + EL + +R + S++ R I AL +LH ++
Sbjct: 105 CFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 161
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
D+ P ++++ ++ H++++ G A +S + ++ YV+PE K +
Sbjct: 162 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 219
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
D++ G I+ L+ G P A ++ + + I++
Sbjct: 220 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 253
>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.28 A Resolution
pdb|4G34|A Chain A, Crystal Structure Of Gsk6924 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.70 A Resolution
Length = 299
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 53/225 (23%), Positives = 88/225 (39%), Gaps = 41/225 (18%)
Query: 683 TTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHP 741
T E + G+ G ++ ++ +D + +K+I + + +V KL HP
Sbjct: 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKL-EHP 63
Query: 742 NIVRLHGVC-------RSEKAAYLVYEYIEGKELSEVLRNLSW--------ERRRKVAI- 785
IVR + + ++ VY YI+ +L W ER R V +
Sbjct: 64 GIVRYFNAWLEKNTTEKLQPSSPKVYLYIQ-MQLCRKENLKDWMNGRCTIEERERSVCLH 122
Query: 786 ---GIAKALRFLHFHCSPSVVAGDVSP----------------GKVIVDGKDEPHLRLSV 826
IA+A+ FLH S ++ D+ P G V +DE +
Sbjct: 123 IFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLT 179
Query: 827 PGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLL 871
P AY + + + Y++PE + K DI+ GLIL +LL
Sbjct: 180 PMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELL 224
>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl)amide
pdb|2C1B|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
(4r,2s)-5'-(4-(4-Chlorobenzyloxy)pyrrolidin-2-
Ylmethanesulfonyl)isoquinoline
pdb|2VO7|A Chain A, Structure Of Pka Complexed With 4-(4-Chlorobenzyl)-1-(7h-
Pyrrolo(2,3-D)pyrimidin-4-Yl)piperidin-4-Ylamine
pdb|3AG9|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
pdb|3AG9|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
Length = 351
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 160 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252
>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDR|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With The Inhibitor
A- 443654
pdb|2UW9|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|2X39|A Chain A, Structure Of
4-Amino-N-(4-Chlorobenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidine-4-Carboxamide Bound To Pkb
pdb|2XH5|A Chain A, Structure Of 4-(4-Tert-Butylbenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidin-4-Amine Bound To Pkb
Length = 342
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
HP + L ++ V EY G EL L R + ER R I AL +LH
Sbjct: 69 HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH- 127
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS--------AYVAPET 848
S VV D+ +++D + H++++ GL C + S ++ Y+APE
Sbjct: 128 --SRDVVYRDIKLENLMLDK--DGHIKITDFGL--CKEGISDGATMKXFCGTPEYLAPEV 181
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP 876
E D D +G G+++ +++ G+ P
Sbjct: 182 LEDNDYGRAVDWWGLGVVMYEMMCGRLP 209
>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d
With Gsk3 Peptide And Amp-Pnp
Length = 336
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
HP + L ++ V EY G EL L R + ER R I AL +LH
Sbjct: 64 HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH- 122
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS--------AYVAPET 848
S VV D+ +++D + H++++ GL C + S ++ Y+APE
Sbjct: 123 --SRDVVYRDIKLENLMLDK--DGHIKITDFGL--CKEGISDGATMKXFCGTPEYLAPEV 176
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP 876
E D D +G G+++ +++ G+ P
Sbjct: 177 LEDNDYGRAVDWWGLGVVMYEMMCGRLP 204
>pdb|2F7E|E Chain E, Pka Complexed With
(S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6-
Yl-Pyridin-3-Yloxymethyl-Etylamine
pdb|2F7X|E Chain E, Protein Kinase A Bound To
(s)-2-(1h-indol-3-yl)-1-[5-((e)-2-
Pyridin-4-yl-vinyl)-pyridin-3-yloxymethyl]-ethylamine
pdb|2F7Z|E Chain E, Protein Kinase A Bound To
(R)-1-(1h-Indol-3-Ylmethyl)-2-(2-
Pyridin-4-Yl-[1,7]naphtyridin-5-Yloxy)-Ehylamine
pdb|2OH0|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
pdb|2OJF|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
Length = 351
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN---SSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 160 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 116/260 (44%), Gaps = 50/260 (19%)
Query: 348 NNLTVIDLSTNFLTGKIP--------------------ETLCDSGSLFKLILFSNSLEGK 387
NNLT I+ S N LT P L + +L L LF+N +
Sbjct: 67 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 126
Query: 388 IPNSLSTCKSLRRVRLQNNRLSGELS--SEFTRLPLVYFLDISGNDLSGRIGEQKWEMTS 445
P L +L R+ L +N +S ++S S T L + F GN ++ + +T+
Sbjct: 127 DP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSF----GNQVTDL--KPLANLTT 177
Query: 446 LQMLNLAGNNFS-----GKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISR 500
L+ L+++ N S KL + LE+L + N+ S P G L+ L +L ++
Sbjct: 178 LERLDISSNKVSDISVLAKLTN------LESLIATNNQISDITP--LGILTNLDELSLNG 229
Query: 501 NKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLG 560
N+L DI L+S L LDL+NNQ+S P LS + L +L L NQ+S P L
Sbjct: 230 NQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 283
Query: 561 RVASLVQVNISHNHFHGSLP 580
+ +L + ++ N P
Sbjct: 284 GLTALTNLELNENQLEDISP 303
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 10/142 (7%)
Query: 128 IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTL 187
+ SL+ L LDL+NN +S P + + L L LG N + PL + +T+L L
Sbjct: 238 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL--AGLTALTNLEL 293
Query: 188 ASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS 247
NQL P I L+NL ++ L +NN+S P + LT L L NN + S
Sbjct: 294 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFANNKVSDV-SS 347
Query: 248 FGNLSNLRYLFLYQNKLTGSIP 269
NL+N+ +L N+++ P
Sbjct: 348 LANLTNINWLSAGHNQISDLTP 369
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 44/214 (20%)
Query: 127 PIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFT 186
P+ +L+ LE LD+S+N KV D+ ++ +T+L+
Sbjct: 171 PLANLTTLERLDISSN----------------KVSDIS----------VLAKLTNLESLI 204
Query: 187 LASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIG---DLTSLNHLDLVYNNLTGQ 243
+NQ+ P +G L NL + L N L K+IG LT+L LDL N ++
Sbjct: 205 ATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLDLANNQISNL 257
Query: 244 IPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLE 303
P L+ L L L N+++ P + GL +L + +L++N L P + L+NL
Sbjct: 258 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 311
Query: 304 ILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFS 337
L L+ NN + P ++S+ KLQ L +N+ S
Sbjct: 312 YLTLYFNNISDISP--VSSLTKLQRLFFANNKVS 343
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 17/239 (7%)
Query: 732 SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKAL 791
++ +L+ HPNIVRLH E YL+++ + G EL E + + + I + L
Sbjct: 61 ARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQIL 120
Query: 792 RFLHFHCSP-SVVAGDVSPGKVIVDGK-DEPHLRLSVPGLAYCTDSKS------INSSAY 843
+ HC VV ++ P +++ K ++L+ GLA + + + Y
Sbjct: 121 EAV-LHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGY 179
Query: 844 VAPETKESKDITEKGDIYGFGLILIDLLTGKSP-ADADFGVHESIVEWARYCYSDCHLDT 902
++PE + D++ G+IL LL G P D D ++ Y + DT
Sbjct: 180 LSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDT 239
Query: 903 WVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISSCVSGLK 961
V P + N+++ I N + TA + P S + T+ SC V LK
Sbjct: 240 -VTP----EAKDLINKMLTI-NPSKRITAAEALKHPWISHRS-TVASCMHRQETVDCLK 291
>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain
pdb|1MRY|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain
Length = 339
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
HP + L ++ V EY G EL L R + ER R I AL +LH
Sbjct: 67 HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH- 125
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS--------AYVAPET 848
S VV D+ +++D + H++++ GL C + S ++ Y+APE
Sbjct: 126 --SRDVVYRDIKLENLMLD--KDGHIKITDFGL--CKEGISDGATMKTFCGTPEYLAPEV 179
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP 876
E D D +G G+++ +++ G+ P
Sbjct: 180 LEDNDYGRAVDWWGLGVVMYEMMCGRLP 207
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 123/304 (40%), Gaps = 50/304 (16%)
Query: 198 REIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYL 257
R L++LK + L YN ++ + L +L L+L YN L +F L + Y+
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343
Query: 258 FLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSG-----EIPE------EVIQLQNL---- 302
L +N + ++ L+ L + DL DN L+ IP+ +++ L +
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTA 403
Query: 303 EILHLFSNNFTG-KIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQN-NLTVIDLSTNFL 360
++HL N I L +P LQ+L L N+FS +N +L + L N L
Sbjct: 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463
Query: 361 TGKIPETLCDS-----GSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSE 415
LC L L L N L P S +LR + L +NRL+
Sbjct: 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV----- 518
Query: 416 FTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLS 475
+S NDL +L++L+++ N PD F S L LD++
Sbjct: 519 -----------LSHNDLPA----------NLEILDISRNQLLAPNPDVFVS--LSVLDIT 555
Query: 476 ENRF 479
N+F
Sbjct: 556 HNKF 559
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 112/435 (25%), Positives = 166/435 (38%), Gaps = 98/435 (22%)
Query: 158 LKVLDLGGNVLVGEIPLSISN-ITSLQIFTLA-SNQLIGSIPREIGQLRNLKWIYLGYNN 215
L++LD+ GN +I + SN I+ Q F+L ++ ++G+ G++N
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA--------------GFGFHN 251
Query: 216 LSGEIPKEIGDL--TSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSIL 273
+ L +S+ HLDL + + F L +L+ L L NK+ ++
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311
Query: 274 GLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWS 333
GL +L +LS N L GE L+S+NF G +PK+ + L
Sbjct: 312 GLDNLQVLNLSYNLL-GE---------------LYSSNFYG--------LPKVAYIDLQK 347
Query: 334 NQFSGEIPSNLGKQNNLTVIDLSTNFLTG-----KIPETLCDSGSLFKLILFSNSLEGKI 388
N + L +DL N LT IP+ L L KI
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTL--------PKI 399
Query: 389 PNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQM 448
N + L RL+N L ++YFL + LQ+
Sbjct: 400 -NLTANLIHLSENRLEN-------------LDILYFL---------------LRVPHLQI 430
Query: 449 LNLAGNNFSGKLPDSFGSDQ--LENLDLSENRFSGTIPRS-----FGRLSELMQLKISRN 501
L L N FS D S+ LE L L EN F LS L L ++ N
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490
Query: 502 KLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPV-LGQLDLSENQLSGKIPQTLG 560
L P S L L L++N+L+ S +++P L LD+S NQL P
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLT---VLSHNDLPANLEILDISRNQLLAPNPDVF- 546
Query: 561 RVASLVQVNISHNHF 575
SL ++I+HN F
Sbjct: 547 --VSLSVLDITHNKF 559
>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit
Of Camp- Dependent Protein Kinase
Length = 350
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of
Camp-Dependent Protein Kinase And An Inhibitor Peptide
Displays An Open Conformation
Length = 350
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein
Kinase Catalytic Subunit
pdb|1J3H|B Chain B, Crystal Structure Of Apoenzyme Camp-Dependent Protein
Kinase Catalytic Subunit
Length = 350
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLXGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To
Hydroxyfasudil
Length = 351
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 160 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252
>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 8
pdb|1XH5|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH6|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH8|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|2GFC|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
Length = 350
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLAGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|3UDB|A Chain A, Crystal Structure Of Snrk2.6
pdb|3UDB|B Chain B, Crystal Structure Of Snrk2.6
pdb|3UDB|C Chain C, Crystal Structure Of Snrk2.6
pdb|3UDB|D Chain D, Crystal Structure Of Snrk2.6
pdb|3UDB|E Chain E, Crystal Structure Of Snrk2.6
pdb|3UDB|F Chain F, Crystal Structure Of Snrk2.6
Length = 317
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 6/145 (4%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNIVR V + +V EY G EL E + N + + + + +
Sbjct: 72 LRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYA 131
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-----YCTDSKSINSSAYVAPETKESK 852
+ V D+ ++DG P L+++ G + + ++ + AY+APE K
Sbjct: 132 HAMQVAHRDLKLENTLLDGSPAPRLKIADFGYSKASVLHSQPKSAVGTPAYIAPEVLLKK 191
Query: 853 DITEK-GDIYGFGLILIDLLTGKSP 876
+ K D++ G+ L +L G P
Sbjct: 192 EYDGKVADVWSCGVTLYVMLVGAYP 216
>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent
Protein Kinase
Length = 350
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of
Camp-Dependent Protein Kinase And Adenosine Further
Defines Conformational Flexibility
pdb|1BX6|A Chain A, Crystal Structure Of The Potent Natural Product Inhibitor
Balanol In Complex With The Catalytic Subunit Of Camp-
Dependent Protein Kinase
Length = 350
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant
Catalytic Subunit Of Camp-Dependent Protein Kinase
Complexed With The Peptide Inhibitor Pki(5-24) And
Adenosine
pdb|1JLU|E Chain E, Crystal Structure Of The Catalytic Subunit Of
Camp-dependent Protein Kinase Complexed With A
Phosphorylated Substrate Peptide And Detergent
pdb|1RE8|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 2
pdb|1REJ|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 1
pdb|1REK|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 8
pdb|2QVS|E Chain E, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
pdb|3FJQ|E Chain E, Crystal Structure Of Camp-Dependent Protein Kinase
Catalytic Subunit Alpha In Complex With Peptide
Inhibitor Pki Alpha (6-25)
pdb|3IDB|A Chain A, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
pdb|3IDC|A Chain A, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
pdb|3O7L|D Chain D, Crystal Structure Of Phospholamban (1-19):pka
C-Subunit:amp-Pnp:mg2+ Complex
pdb|3OW3|A Chain A, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|1ATP|E Chain E, 2.2 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
Mnatp And A Peptide Inhibitor
pdb|4DIN|A Chain A, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 350
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H89 Protein
Kinase Inhibitor N-[2-
(4-Bromocinnamylamino)ethyl]-5-Isoquinoline
pdb|1YDR|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H7 Protein
Kinase Inhibitor 1-(5-
Isoquinolinesulfonyl)-2-Methylpiperazine
pdb|1YDS|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H8 Protein
Kinase Inhibitor [n-(2-Methylamino)ethyl]-5-
Isoquinolinesulfonamide
Length = 350
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 116/260 (44%), Gaps = 50/260 (19%)
Query: 348 NNLTVIDLSTNFLTGKIP--------------------ETLCDSGSLFKLILFSNSLEGK 387
NNLT I+ S N LT P L + +L L LF+N +
Sbjct: 63 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 122
Query: 388 IPNSLSTCKSLRRVRLQNNRLSGELS--SEFTRLPLVYFLDISGNDLSGRIGEQKWEMTS 445
P L +L R+ L +N +S ++S S T L + F GN ++ + +T+
Sbjct: 123 DP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLNF----GNQVTDL--KPLANLTT 173
Query: 446 LQMLNLAGNNFS-----GKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISR 500
L+ L+++ N S KL + LE+L + N+ S P G L+ L +L ++
Sbjct: 174 LERLDISSNKVSDISVLAKLTN------LESLIATNNQISDITP--LGILTNLDELSLNG 225
Query: 501 NKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLG 560
N+L DI L+S L LDL+NNQ+S P LS + L +L L NQ+S P L
Sbjct: 226 NQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 279
Query: 561 RVASLVQVNISHNHFHGSLP 580
+ +L + ++ N P
Sbjct: 280 GLTALTNLELNENQLEDISP 299
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 10/142 (7%)
Query: 128 IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTL 187
+ SL+ L LDL+NN +S P + + L L LG N + PL + +T+L L
Sbjct: 234 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL--AGLTALTNLEL 289
Query: 188 ASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS 247
NQL P I L+NL ++ L +NN+S P + LT L L NN + S
Sbjct: 290 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFSNNKVSDV-SS 343
Query: 248 FGNLSNLRYLFLYQNKLTGSIP 269
NL+N+ +L N+++ P
Sbjct: 344 LANLTNINWLSAGHNQISDLTP 365
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 44/214 (20%)
Query: 127 PIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFT 186
P+ +L+ LE LD+S+N KV D+ ++ +T+L+
Sbjct: 167 PLANLTTLERLDISSN----------------KVSDIS----------VLAKLTNLESLI 200
Query: 187 LASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIG---DLTSLNHLDLVYNNLTGQ 243
+NQ+ P +G L NL + L N L K+IG LT+L LDL N ++
Sbjct: 201 ATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLDLANNQISNL 253
Query: 244 IPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLE 303
P L+ L L L N+++ P + GL +L + +L++N L P + L+NL
Sbjct: 254 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 307
Query: 304 ILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFS 337
L L+ NN + P ++S+ KLQ L +N+ S
Sbjct: 308 YLTLYFNNISDISP--VSSLTKLQRLFFSNNKVS 339
>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ GLA ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLMID--QQGYIKVTDFGLAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5Q|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
Length = 348
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 88/209 (42%), Gaps = 33/209 (15%)
Query: 687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDV---SQFGKLIMHPNI 743
+L G + Y R + N +KK+ + ++ W D+ +F + + HPN
Sbjct: 58 DLREIGHGSFGAVYFARDVRNSEVVAIKKM-SYSGKQSNEKWQDIIKEVRFLQKLRHPNT 116
Query: 744 VRLHGVCRSEKAAYLVYEYIEG--KELSEVLRN-LSWERRRKVAIGIAKALRFLHFHCSP 800
++ G E A+LV EY G +L EV + L V G + L +LH H
Sbjct: 117 IQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH--- 173
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--SKSINSSA--------YVAPETKE 850
+++ DV G ++ LS PGL D S SI + A ++APE
Sbjct: 174 NMIHRDVKAGNIL----------LSEPGLVKLGDFGSASIMAPANXFVGTPYWMAPEVIL 223
Query: 851 SKDITE---KGDIYGFGLILIDLLTGKSP 876
+ D + K D++ G+ I+L K P
Sbjct: 224 AMDEGQYDGKVDVWSLGITCIELAERKPP 252
>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|C Chain C, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|D Chain D, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
Length = 295
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 9/149 (6%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALR-FL 794
+L+ H NIVRLH E YLV++ + G EL E + + + I + L L
Sbjct: 58 RLLKHSNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVL 117
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLAYCTDSKS------INSSAYVAPE 847
H H VV D+ P +++ K + ++L+ GLA + Y++PE
Sbjct: 118 HCH-QMGVVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGYLSPE 176
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
+ + DI+ G+IL LL G P
Sbjct: 177 VLRKEAYGKPVDIWACGVILYILLVGYPP 205
>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-670
pdb|3L9L|A Chain A, Crystal Structure Of Pka With Compound 36
pdb|3L9L|B Chain B, Crystal Structure Of Pka With Compound 36
pdb|3OOG|A Chain A, Human Camp-Dependent Protein Kinase In Complex With A
Small Fragment
pdb|3OVV|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OWP|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OXT|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3P0M|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3POO|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
Length = 351
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 160 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252
>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol
Length = 351
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 160 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252
>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In
Complex With Staurosporine
pdb|1Q8T|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase
(Pka) In Complex With Rho-Kinase Inhibitor Y-27632
pdb|1Q8U|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor H-1152p
pdb|1SVE|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 1
pdb|1SVG|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 4
pdb|1VEB|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 5
pdb|3E8C|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|C Chain C, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|D Chain D, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|F Chain F, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8E|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|I Chain I, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|L Chain L, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|P Chain P, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
Length = 350
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure
pdb|2GCD|B Chain B, Tao2 Kinase Domain-Staurosporine Structure
Length = 309
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 88/209 (42%), Gaps = 33/209 (15%)
Query: 687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDV---SQFGKLIMHPNI 743
+L G + Y R + N +KK+ + ++ W D+ +F + + HPN
Sbjct: 19 DLREIGHGSFGAVYFARDVRNSEVVAIKKM-SYSGKQSNEKWQDIIKEVRFLQKLRHPNT 77
Query: 744 VRLHGVCRSEKAAYLVYEYIEG--KELSEVLRN-LSWERRRKVAIGIAKALRFLHFHCSP 800
++ G E A+LV EY G +L EV + L V G + L +LH H
Sbjct: 78 IQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH--- 134
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--SKSINSSA--------YVAPETKE 850
+++ DV G ++ LS PGL D S SI + A ++APE
Sbjct: 135 NMIHRDVKAGNIL----------LSEPGLVKLGDFGSASIMAPANXFVGTPYWMAPEVIL 184
Query: 851 SKDITE---KGDIYGFGLILIDLLTGKSP 876
+ D + K D++ G+ I+L K P
Sbjct: 185 AMDEGQYDGKVDVWSLGITCIELAERKPP 213
>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
pdb|3DNE|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 6/147 (4%)
Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISN-ITSLQI 184
VP G ++ LDL N L + L L LGGN L +P + N +TSL
Sbjct: 22 VPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTY 80
Query: 185 FTLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEIGD-LTSLNHLDLVYNNLTG 242
L++NQL S+P + +L LK + L N L +P + D LT L L L N L
Sbjct: 81 LNLSTNQL-QSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS 138
Query: 243 QIPPSFGNLSNLRYLFLYQNKLTGSIP 269
F L++L+Y++L+ N + P
Sbjct: 139 VPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 213 YNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI 272
Y+ +P I T+ +LDL N+L F L++L L+L NKL S+P +
Sbjct: 15 YSQGRTSVPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGV 71
Query: 273 LG-LKSLVSFDLSDNYLSGEIPEEVI-QLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQ 330
L SL +LS N L +P V +L L+ L L +N + +L+ L+
Sbjct: 72 FNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130
Query: 331 LWSNQF 336
L+ NQ
Sbjct: 131 LYQNQL 136
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 56/157 (35%), Gaps = 23/157 (14%)
Query: 424 FLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTI 483
+LD+ N L E+TSL L L GN LP+
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGV------------------- 71
Query: 484 PRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQ 543
F +L+ L L +S N+L +L L L+ NQL ++ L
Sbjct: 72 ---FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD 128
Query: 544 LDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLP 580
L L +NQL R+ SL + + N + + P
Sbjct: 129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 45/118 (38%), Gaps = 2/118 (1%)
Query: 468 QLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQL 527
Q LDL N F L+ L QL + NKL + L L+LS NQL
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88
Query: 528 SGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAF 585
++ L +L L+ NQL ++ L + + N S+P G F
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPD-GVF 144
>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
pdb|1CDK|B Chain B, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
Length = 350
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3AGL|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3VQH|A Chain A, Bromine Sad Partially Resolves Multiple Binding Modes For
Pka Inhibitor H-89
Length = 351
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 160 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252
>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp-
Dependent Protein Kinase Complexed With A Substrate
Peptide, Adp And Detergent
Length = 350
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADEPIQIYEKIV 251
>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|B Chain B, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|E Chain E, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
Length = 371
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 122 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 179
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 180 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 236
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 237 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 272
>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit
Of Camp- Dependent Protein Kinase Reveal Open And Closed
Conformations
Length = 350
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp
pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgatp
Length = 328
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFH 797
P IV +G S+ + E+++G L +VL+ + + KV+I + K L +L
Sbjct: 64 PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLRE- 122
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKS-INSSAYVAPETKESKDIT 855
++ DV P ++V+ + E L V G + + S + + +Y++PE + +
Sbjct: 123 -KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYS 181
Query: 856 EKGDIYGFGLILIDLLTGKSP 876
+ DI+ GL L+++ G+ P
Sbjct: 182 VQSDIWSMGLSLVEMAVGRYP 202
>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
Length = 322
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFH 797
P IV +G S+ + E+++G L +VL+ + + KV+I + K L +L
Sbjct: 64 PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLRE- 122
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKS-INSSAYVAPETKESKDIT 855
++ DV P ++V+ + E L V G + + S + + +Y++PE + +
Sbjct: 123 -KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYS 181
Query: 856 EKGDIYGFGLILIDLLTGKSP 876
+ DI+ GL L+++ G+ P
Sbjct: 182 VQSDIWSMGLSLVEMAVGRYP 202
>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered
N- Terminal Helix
pdb|1XHA|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ GLA ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLMID--QQGYIQVTDFGLAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) Complexed With A Potent Inhibitor
Rdea119 And Mgatp
pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions.
pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions
Length = 341
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFH 797
P IV +G S+ + E+++G L +VL+ + + KV+I + K L +L
Sbjct: 64 PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLRE- 122
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKS-INSSAYVAPETKESKDIT 855
++ DV P ++V+ + E L V G + + S + + +Y++PE + +
Sbjct: 123 -KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYS 181
Query: 856 EKGDIYGFGLILIDLLTGKSP 876
+ DI+ GL L+++ G+ P
Sbjct: 182 VQSDIWSMGLSLVEMAVGRYP 202
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 12/149 (8%)
Query: 737 LIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALR 792
++ HP +V LH + ++YE++ G EL E + + +S + + + K L
Sbjct: 210 VLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLC 269
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK-----SINSSAYVAPE 847
+H + + V D+ P ++ K L+L GL D K + ++ + APE
Sbjct: 270 HMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPE 326
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
E K + D++ G++ LL+G SP
Sbjct: 327 VAEGKPVGYYTDMWSVGVLSYILLSGLSP 355
>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
Length = 333
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFH 797
P IV +G S+ + E+++G L +VL+ + + KV+I + K L +L
Sbjct: 64 PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLRE- 122
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKS-INSSAYVAPETKESKDIT 855
++ DV P ++V+ + E L V G + + S + + +Y++PE + +
Sbjct: 123 -KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYS 181
Query: 856 EKGDIYGFGLILIDLLTGKSP 876
+ DI+ GL L+++ G+ P
Sbjct: 182 VQSDIWSMGLSLVEMAVGRYP 202
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 20/153 (13%)
Query: 737 LIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL--------RNLSWERRRKVAIGIA 788
++ HP +V LH + ++YE++ G EL E + + + E R+V G+
Sbjct: 104 VLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLC 163
Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK-----SINSSAY 843
H H + + V D+ P ++ K L+L GL D K + ++ +
Sbjct: 164 ------HMHEN-NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEF 216
Query: 844 VAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
APE E K + D++ G++ LL+G SP
Sbjct: 217 AAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSP 249
>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent
Protein Kinase Reveals Unexpected Apoenzyme Conformation
pdb|1SYK|B Chain B, Crystal Structure Of E230q Mutant Of Camp-Dependent
Protein Kinase Reveals Unexpected Apoenzyme Conformation
Length = 350
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ + G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYQMAAGYPPFFADQPIQIYEKIV 251
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 30/254 (11%)
Query: 351 TVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRL-- 408
T++DL N ++ + L+ L+L +N + + S + L+++ + N L
Sbjct: 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE 116
Query: 409 -SGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNF--SGKLPDSFG 465
L S L I N + + ++ + + GN SG P +F
Sbjct: 117 IPPNLPSSLVEL------RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 466 SDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNN 525
+L L +SE + +G IP+ L +L + NK+ E+L KL L L +N
Sbjct: 171 GLKLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227
Query: 526 QLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAF 585
Q+ SLS +P L +L L N+LS ++P L + L+QV H +
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL-KLLQVVYLHTN----------- 274
Query: 586 LAINATAVAGNDLC 599
N T V ND C
Sbjct: 275 ---NITKVGVNDFC 285
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 107/240 (44%), Gaps = 12/240 (5%)
Query: 136 ILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGS 195
+LDL NN +S ++ L L L N + + S + LQ ++ N L+
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117
Query: 196 IPREIGQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYNNL--TGQIPPSFGNLS 252
P L L+ ++N ++PK + L ++N +++ N L +G P +F L
Sbjct: 118 PPNLPSSLVELRI----HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173
Query: 253 NLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNF 312
L YL + + KLTG IPK + ++L L N + E++++ L L L N
Sbjct: 174 -LNYLRISEAKLTG-IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 313 TGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSG 372
SL+ +P L+ L L +N+ S +P+ L L V+ L TN +T C G
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG 288
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 29/213 (13%)
Query: 220 IPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLV 279
+PKEI T+L LDL N+++ F L +L L L NK++ K+ L+ L
Sbjct: 48 VPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105
Query: 280 SFDLSDNYL---SGEIPEEVIQ------------------LQNLEILHLFSNNF--TGKI 316
+S N+L +P +++ L+N+ + + N +G
Sbjct: 106 KLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165
Query: 317 PSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFK 376
P + + KL L++ + +G IP +L + L + L N + E L L++
Sbjct: 166 PGAFDGL-KLNYLRISEAKLTG-IPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYR 221
Query: 377 LILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLS 409
L L N + SLS +LR + L NN+LS
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254
>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
pdb|1TKI|B Chain B, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
Length = 321
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLH 795
H NI+ LH S + +++E+I G ++ E + ++E + + + +AL+FLH
Sbjct: 60 HRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLH 119
Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS-----INSSAYVAPETKE 850
H ++ D+ P +I + +++ G A + Y APE +
Sbjct: 120 SH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQ 176
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSD 897
++ D++ G ++ LL+G +P A+ + + E+I+ A Y + +
Sbjct: 177 HDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMN-AEYTFDE 224
>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4987655 And Mgamp-Pnp
pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4858061 And Mgatp
Length = 307
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFH 797
P IV +G S+ + E+++G L +VL+ + + KV+I + K L +L
Sbjct: 64 PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLRE- 122
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKS-INSSAYVAPETKESKDIT 855
++ DV P ++V+ + E L V G + + S + + +Y++PE + +
Sbjct: 123 -KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYS 181
Query: 856 EKGDIYGFGLILIDLLTGKSP 876
+ DI+ GL L+++ G+ P
Sbjct: 182 VQSDIWSMGLSLVEMAVGRYP 202
>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B
Akt By Hydrophobic Motif Phosphorylation
pdb|1GZO|A Chain A, Structure Of Protein Kinase B Unphosphorylated
Length = 315
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
HP + L ++ V EY G EL L R + ER R I AL +LH
Sbjct: 64 HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH- 122
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS--------AYVAPET 848
S VV D+ +++D + H++++ GL C + S ++ Y+APE
Sbjct: 123 --SRDVVYRDIKLENLMLD--KDGHIKITDFGL--CKEGISDGATMKTFCGTPEYLAPEV 176
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP 876
E D D +G G+++ +++ G+ P
Sbjct: 177 LEDNDYGRAVDWWGLGVVMYEMMCGRLP 204
>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With
Compound 1, Atp-Gs And Mg2p
pdb|3EQD|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Atp-Gs
And Mg2p
pdb|3EQF|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With K252a
And Mg2p
pdb|3EQG|A Chain A, X-ray Structure Of The Human Mitogen-activated Protein
Kinase Kinase 1 (mek1) In A Ternary Complex With Pd, Adp
And Mg2p
pdb|3EQH|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With U0126,
Adp And Mg2p
pdb|3EQI|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Adp And
Mg2p
Length = 360
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFH 797
P IV +G S+ + E+++G L +VL+ + + KV+I + K L +L
Sbjct: 91 PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLRE- 149
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKS-INSSAYVAPETKESKDIT 855
++ DV P ++V+ + E L V G + + S + + +Y++PE + +
Sbjct: 150 -KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYS 208
Query: 856 EKGDIYGFGLILIDLLTGKSP 876
+ DI+ GL L+++ G+ P
Sbjct: 209 VQSDIWSMGLSLVEMAVGRYP 229
>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With
Ind E804
Length = 324
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 11/147 (7%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL-SWERRRKVAIGIAKALRFL 794
K + H NIV LH + +EK+ LV+EY++ K+L + L + + V + + + LR L
Sbjct: 55 KDLKHANIVTLHDIIHTEKSLTLVFEYLD-KDLKQYLDDCGNIINMHNVKLFLFQLLRGL 113
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET 848
+ V+ D+ P ++++ + E L+L+ GLA T + + Y P+
Sbjct: 114 AYCHRQKVLHRDLKPQNLLINERGE--LKLADFGLARAKSIPTKTYDNEVVTLWYRPPDI 171
Query: 849 -KESKDITEKGDIYGFGLILIDLLTGK 874
S D + + D++G G I ++ TG+
Sbjct: 172 LLGSTDYSTQIDMWGVGCIFYEMATGR 198
>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
A Peptide Inhibitor And Detergent
Length = 350
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + + R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFAEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFH 797
P IV +G S+ + E+++G L +VL+ + + KV+I + K L +L
Sbjct: 67 PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLRE- 125
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPG-LAYCTDSKSINSSAYVAPETKESKDIT 855
++ DV P ++V+ + E L V G L ++ + + +Y++PE + +
Sbjct: 126 -KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDEMANEFVGTRSYMSPERLQGTHYS 184
Query: 856 EKGDIYGFGLILIDLLTGKSP 876
+ DI+ GL L+++ G+ P
Sbjct: 185 VQSDIWSMGLSLVEMAVGRYP 205
>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer
Length = 395
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFH 797
P IV +G S+ + E+++G L +VL+ + + KV+I + K L +L
Sbjct: 126 PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREK 185
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKS-INSSAYVAPETKESKDIT 855
++ DV P ++V+ + E L V G + + S + + +Y++PE + +
Sbjct: 186 HK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYS 243
Query: 856 EKGDIYGFGLILIDLLTGKSP 876
+ DI+ GL L+++ G+ P
Sbjct: 244 VQSDIWSMGLSLVEMAVGRYP 264
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 13/148 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL-RNLSWERRRKVAIGIAKALRFL 794
K + HPNIV L V SE+ LV+E++E K+L +VL N + + ++ I + + LR +
Sbjct: 74 KELHHPNIVSLIDVIHSERCLTLVFEFME-KDLKKVLDENKTGLQDSQIKIYLYQLLRGV 132
Query: 795 HFHCSP-SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPE 847
HC ++ D+ P ++++ + L+L+ GLA + + + + Y AP+
Sbjct: 133 A-HCHQHRILHRDLKPQNLLINS--DGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPD 189
Query: 848 T-KESKDITEKGDIYGFGLILIDLLTGK 874
SK + DI+ G I +++TGK
Sbjct: 190 VLMGSKKYSTSVDIWSIGCIFAEMITGK 217
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 13/148 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL-RNLSWERRRKVAIGIAKALRFL 794
K + HPNIV L V SE+ LV+E++E K+L +VL N + + ++ I + + LR +
Sbjct: 74 KELHHPNIVSLIDVIHSERCLTLVFEFME-KDLKKVLDENKTGLQDSQIKIYLYQLLRGV 132
Query: 795 HFHCSP-SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPE 847
HC ++ D+ P ++++ + L+L+ GLA + + + + Y AP+
Sbjct: 133 A-HCHQHRILHRDLKPQNLLINS--DGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPD 189
Query: 848 T-KESKDITEKGDIYGFGLILIDLLTGK 874
SK + DI+ G I +++TGK
Sbjct: 190 VLMGSKKYSTSVDIWSIGCIFAEMITGK 217
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 87/179 (48%), Gaps = 18/179 (10%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K I +++ F + KL HP +V+L+GVC + LV+E++E LS+
Sbjct: 54 VAIKTIKEGSMSEDDFIEEAEVMMKL-SHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDY 112
Query: 772 LRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
LR + E + + + + + +L C V+ D++ +V G+++ +++S
Sbjct: 113 LRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLV-GENQV-IKVSDF 167
Query: 828 GLA-YCTDSKSINSSA------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPAD 878
G+ + D + +S+ + +PE + K D++ FG+++ ++ + GK P +
Sbjct: 168 GMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYE 226
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 123/449 (27%), Positives = 195/449 (43%), Gaps = 54/449 (12%)
Query: 126 VPIGSLSRLEILDLSNNMLSG-KIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQI 184
+P+ + LE L L +N +S K+P+ + LKVLD N + LS +++SLQ
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPT-EKLKVLDFQNNAIHY---LSKEDMSSLQQ 178
Query: 185 FT-----LASNQLIGSIP----------REIGQLRNLKWIYLGYNNLSGEIPKEIGDLTS 229
T L N + G P G +NL I+ G N + + +G
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ-SLWLGTFED 237
Query: 230 LNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLS 289
++ D+ G S +++ ++ F ++ + GL+ L DL+ +LS
Sbjct: 238 MDDEDISPAVFEGLCEMSVESINLQKHYFF---NISSNTFHCFSGLQEL---DLTATHLS 291
Query: 290 GEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSN-LGKQN 348
E+P ++ L L+ L L +N F S ++ P L L + N E+ + L
Sbjct: 292 -ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350
Query: 349 NLTVIDLSTNFLTGKIPETLCDSGSLFKLI-LFSNSLEGKIPNSLST-----CKSLRRVR 402
NL +DLS + I + C + L L L S +L P SL T C L +
Sbjct: 351 NLRELDLSHD----DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406
Query: 403 LQNNRLS-GELSSEFTRLPLVYFLDISGN--DLSGRIGEQKWE-MTSLQMLNLAGNNFSG 458
L RL + S F L L+ L++S + D+S EQ ++ + +LQ LNL GN+F
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS---SEQLFDGLPALQHLNLQGNHFPK 463
Query: 459 KLPDSFGSDQ----LENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSC 514
S Q LE L LS S +F L + + +S N+L E LS
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523
Query: 515 KKLVSLDLSNNQLSGHIPASLSEMPVLGQ 543
K + L+L++N +S +P S +P+L Q
Sbjct: 524 KG-IYLNLASNHISIILP---SLLPILSQ 548
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 111/264 (42%), Gaps = 34/264 (12%)
Query: 350 LTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLS 409
L +DL+ L+ ++P L +L KL+L +N E S S SL + ++ N
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 410 GELSSE-FTRLPLVYFLDISGNDL--SGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS 466
EL + L + LD+S +D+ S Q ++ LQ LNL+ N ++F
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398
Query: 467 -DQLENLDLSENRFSGTIPRSFGRLSELMQ--------LKISRNKLFGDIP--------- 508
QLE LDL+ R +S + L++ L IS +LF +P
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458
Query: 509 -----------EELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQ 557
L + +L L LS LS + + + ++ +DLS N+L+ +
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518
Query: 558 TLGRVASLVQVNISHNHFHGSLPS 581
L + + +N++ NH LPS
Sbjct: 519 ALSHLKG-IYLNLASNHISIILPS 541
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 9/162 (5%)
Query: 133 RLEILDLSNNMLSGKIPEE-IGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQ 191
+LE+LDL+ L K + + LKVL+L ++L + +LQ L N
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460
Query: 192 L-IGSIPR--EIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSF 248
G+I + + L L+ + L + +LS L +NH+DL +N LT S
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS---SI 517
Query: 249 GNLSNLR--YLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYL 288
LS+L+ YL L N ++ +P + L + +L N L
Sbjct: 518 EALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 124/324 (38%), Gaps = 69/324 (21%)
Query: 300 QNLEILHLFSNNFTG-KIPSSLASMPKLQVLQLWSNQ---FSGEIPSNLGKQNNLTVIDL 355
+ LE L+L SN+ + K+P + KL+VL +N S E S+L + NL+ ++L
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPT-EKLKVLDFQNNAIHYLSKEDMSSLQQATNLS-LNL 186
Query: 356 STNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSG----- 410
+ N + G P ++F+ + F G N L K L+ +Q+ L
Sbjct: 187 NGNDIAGIEPGAF--DSAVFQSLNF-----GGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239
Query: 411 -------------ELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFS 457
E+S E L YF +IS N G Q+ ++T+ +
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL--------- 290
Query: 458 GKLPDSF-GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRN--------------- 501
+LP G L+ L LS N+F S L L I N
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350
Query: 502 -----KLFGDIPEELSSCK-------KLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSEN 549
L D E C L SL+LS N+ + E P L LDL+
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410
Query: 550 QLSGKIPQTLGRVASLVQV-NISH 572
+L K Q+ + L++V N+SH
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSH 434
>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
pdb|4DFY|E Chain E, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
Length = 371
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 122 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 179
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A + + Y+APE SK
Sbjct: 180 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGATWTLCGTPEYLAPEIILSKGY 236
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 237 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 272
>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
pdb|4AE9|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
Length = 343
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---ERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + R A I +LH
Sbjct: 94 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLH-- 151
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 152 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 208
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 209 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 244
>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent
Protein Kinase With Unphosphorylated Turn Motif
Length = 371
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---ERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + R A I +LH
Sbjct: 122 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLH-- 179
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 180 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 236
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 237 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 272
>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb
Length = 350
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLMID--QQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 345
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---ERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + R A I +LH
Sbjct: 96 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLH-- 153
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 154 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 210
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 211 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 246
>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit
Of Camp- Dependent Protein Kinase In Complex With Sp20
And Amp-Pnp
pdb|4DFZ|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit
Of Camp- Dependent Protein Kinase In Complex With Sp20
Length = 350
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---ERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9M|B Chain B, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9N|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 27
Length = 351
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY G E+ LR + S R A I +LH
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 160 -SLDLIYRDLKPENLMID--QQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252
>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
A- 443654
Length = 351
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---ERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + R A I +LH
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 160 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252
>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2F2U|B Chain B, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2H9V|A Chain A, Structural Basis For Induced-Fit Binding Of Rho-Kinase To
The Inhibitor Y27632
Length = 402
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 36/212 (16%)
Query: 702 VRSLANDMQFVVKKIIDVNTITTSS---FWP--DVSQFGKLIMHPNIVRLHGVCRSEKAA 756
VR A+ + +K + I S FW D+ F P +V+L + +K
Sbjct: 94 VRHKASQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFAN---SPWVVQLFCAFQDDKYL 150
Query: 757 YLVYEYIEGKELSEVLRNLS----WERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKV 812
Y+V EY+ G +L ++ N W + + + AL +H S ++ DV P +
Sbjct: 151 YMVMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVL--ALDAIH---SMGLIHRDVKPDNM 205
Query: 813 IVDGKDEPHLRLS---------VPGLAYCTDSKSINSSAYVAPETKESKD----ITEKGD 859
++D HL+L+ G+ +C ++ + Y++PE +S+ + D
Sbjct: 206 LLDK--HGHLKLADFGTCMKMDETGMVHC--DTAVGTPDYISPEVLKSQGGDGYYGRECD 261
Query: 860 IYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
+ G+ L ++L G +P AD+ G + I++
Sbjct: 262 WWSVGVFLFEMLVGDTPFYADSLVGTYSKIMD 293
>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo
Form)
pdb|4FVQ|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain
(Mg-Atp-Bound Form)
Length = 289
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 112/273 (41%), Gaps = 39/273 (14%)
Query: 694 KGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE 753
KGV ++ + ++K + + + SF+ S KL H ++V +GVC
Sbjct: 26 KGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKL-SHKHLVLNYGVCVCG 84
Query: 754 KAAYLVYEYIEGKELSEVLR------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDV 807
LV E+++ L L+ N+ W + +VA +A A+ FL +++ G+V
Sbjct: 85 DENILVQEFVKFGSLDTYLKKNKNCINILW--KLEVAKQLAAAMHFLE---ENTLIHGNV 139
Query: 808 SPGKVIVDGKDE------PHLRLSVPGLAYCTDSKSI--NSSAYVAPETKES-KDITEKG 858
+++ +++ P ++LS PG++ K I +V PE E+ K++
Sbjct: 140 CAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQERIPWVPPECIENPKNLNLAT 199
Query: 859 DIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE 918
D + FG L ++ +G D +S + Y D H +
Sbjct: 200 DKWSFGTTLWEICSG---GDKPLSALDS--QRKLQFYEDRH-------------QLPAPK 241
Query: 919 IVEIMNLALHCTAGDPTARPCASDVTKTLESCF 951
E+ NL +C +P RP + + L S F
Sbjct: 242 AAELANLINNCMDYEPDHRPSFRAIIRDLNSLF 274
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 14/152 (9%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGI----AKAL 791
K HPNIVRL GVC ++ Y+V E ++G + LR R K + + A +
Sbjct: 167 KQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGM 226
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGK------DEPHLRLSVPGLAYCTDSKSINSSAYVA 845
+L C + D++ +V K D R G+ + + A
Sbjct: 227 EYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSREEADGVXAASGGLRQVPVKWTA 283
Query: 846 PETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
PE + + D++ FG++L + + G SP
Sbjct: 284 PEALNYGRYSSESDVWSFGILLWETFSLGASP 315
>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
pdb|2CPK|E Chain E, Crystal Structure Of The Catalytic Subunit Of Cyclic
Adenosine Monophosphate-Dependent Protein Kinase
pdb|4DG0|E Chain E, Crystal Structure Of Myristoylated Wt Catalytic Subunit Of
Camp- Dependent Protein Kinase In Complex With Sp20 And
Amp-Pnp
pdb|4DG2|E Chain E, Crystal Structure Of Myristoylated Wt Catalytic Subunit Of
Camp- Dependent Protein Kinase In Complex With Sp20
pdb|4DH1|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With Low Mg2+, Atp And Ip20
pdb|4DH3|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Atp And Ip20
pdb|4DH5|A Chain A, Room Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Adp,
Phosphate, And Ip20
pdb|4DH7|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Amp-pnp And
Ip20'
pdb|4DH8|A Chain A, Room Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Amp-pnp And
Ip20
Length = 350
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---ERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The
Catalytic Subunit Of Camp-Dependent Protein Kinase
pdb|3TNP|C Chain C, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|F Chain F, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNQ|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 350
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---ERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
pdb|3VW6|B Chain B, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
Length = 269
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 109/268 (40%), Gaps = 38/268 (14%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
GK Y R L+N ++ +K+I + ++ + +++ K + H NIV+ G
Sbjct: 17 GKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIA-LHKHLKHKNIVQYLGSFS 75
Query: 752 SEKAAYLVYEYIEGKELSEVLRNLSWE--RRRKVAIG-----IAKALRFLHFHCSPSVVA 804
+ E + G LS +LR+ W + + IG I + L++LH +V
Sbjct: 76 ENGFIKIFMEQVPGGSLSALLRS-KWGPLKDNEQTIGFYTKQILEGLKYLH---DNQIVH 131
Query: 805 GDVSPGKVIVDGKDEPHLRLS-------VPGLAYCTDSKSINSSAYVAPE--TKESKDIT 855
D+ V+++ L++S + G+ CT++ + + Y+APE K +
Sbjct: 132 RDIKGDNVLINTYSGV-LKISDFGTSKRLAGINPCTETFT-GTLQYMAPEIIDKGPRGYG 189
Query: 856 EKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI 915
+ DI+ G +I++ TGK P Y + + + H
Sbjct: 190 KAADIWSLGCTIIEMATGKPPF---------------YELGEPQAAMFKVGMFKVHPEIP 234
Query: 916 QNEIVEIMNLALHCTAGDPTARPCASDV 943
++ E L C DP R CA+D+
Sbjct: 235 ESMSAEAKAFILKCFEPDPDKRACANDL 262
>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077)
pdb|1XH4|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|3BWJ|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Lead Compound Arc-1034
pdb|3KKV|A Chain A, Structure Of Pka With A Protein Kinase B-Selective
Inhibitor
Length = 350
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---ERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With
Y- 27632
Length = 350
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G ++ LR + S R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYMPGGDMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIKVADFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---ERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp
pdb|1Q62|A Chain A, Pka Double Mutant Model Of Pkb
Length = 350
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLMID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex
With Gold
pdb|3ZUU|B Chain B, The Structure Of Ost1 (D160a, S175d) Kinase In Complex
With Gold
Length = 362
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 6/145 (4%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNIVR V + +V EY G EL E + N + + + + +
Sbjct: 72 LRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYC 131
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-----YCTDSKSINSSAYVAPETKESK 852
+ V D+ ++DG P L++ G + + ++ + AY+APE K
Sbjct: 132 HAMQVCHRDLKLENTLLDGSPAPRLKICAFGYSKSSVLHSQPKDTVGTPAYIAPEVLLKK 191
Query: 853 DITEK-GDIYGFGLILIDLLTGKSP 876
+ K D++ G+ L +L G P
Sbjct: 192 EYDGKVADVWSCGVTLYVMLVGAYP 216
>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
pdb|2CLQ|B Chain B, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
Length = 295
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 109/268 (40%), Gaps = 38/268 (14%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
GK Y R L+N ++ +K+I + ++ + +++ K + H NIV+ G
Sbjct: 31 GKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIA-LHKHLKHKNIVQYLGSFS 89
Query: 752 SEKAAYLVYEYIEGKELSEVLRNLSWE--RRRKVAIG-----IAKALRFLHFHCSPSVVA 804
+ E + G LS +LR+ W + + IG I + L++LH +V
Sbjct: 90 ENGFIKIFMEQVPGGSLSALLRS-KWGPLKDNEQTIGFYTKQILEGLKYLH---DNQIVH 145
Query: 805 GDVSPGKVIVDGKDEPHLRLS-------VPGLAYCTDSKSINSSAYVAPE--TKESKDIT 855
D+ V+++ L++S + G+ CT++ + + Y+APE K +
Sbjct: 146 RDIKGDNVLINTYSGV-LKISDFGTSKRLAGINPCTETFT-GTLQYMAPEIIDKGPRGYG 203
Query: 856 EKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI 915
+ DI+ G +I++ TGK P Y + + + H
Sbjct: 204 KAADIWSLGCTIIEMATGKPPF---------------YELGEPQAAMFKVGMFKVHPEIP 248
Query: 916 QNEIVEIMNLALHCTAGDPTARPCASDV 943
++ E L C DP R CA+D+
Sbjct: 249 ESMSAEAKAFILKCFEPDPDKRACANDL 276
>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Jnj- 7706621
pdb|3AMB|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Vx- 680
Length = 351
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY G E+ LR + S R A I +LH
Sbjct: 102 PFLVKLEFSFKDNSNLYMVLEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 160 -SLDLIYRDLKPENLLID--QQGYIKVADFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252
>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase
pdb|2GNH|A Chain A, Pka Five Fold Mutant Model Of Rho-Kinase With H1152p
pdb|2GNI|A Chain A, Pka Fivefold Mutant Model Of Rho-Kinase With Inhibitor
Fasudil (Ha1077)
Length = 350
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G ++ LR + S R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYMPGGDMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIKVADFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K I ++ F + KL HP +V+L+GVC + LV+E++E LS+
Sbjct: 34 VAIKTIREGAMSEEDFIEEAEVMMKL-SHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDY 92
Query: 772 LRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
LR + E + + + + + +L C V+ D++ +V G+++ +++S
Sbjct: 93 LRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLV-GENQV-IKVSDF 147
Query: 828 GLA-YCTDSKSINSSA------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPAD 878
G+ + D + +S+ + +PE + K D++ FG+++ ++ + GK P +
Sbjct: 148 GMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYE 206
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 27/162 (16%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS--EVLRN-LSWERRRKVAIGIAKALR 792
K + H N+V L VC+ +K YLV+E+++ L E+ N L ++ +K I +
Sbjct: 79 KQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIG 138
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-------RLSVPGLAYCTDSKSINSSAYVA 845
F H H +++ D+ P ++V L L+ PG Y + + Y A
Sbjct: 139 FCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVY---DDEVATRWYRA 192
Query: 846 PE-----TKESKDITEKGDIYGFGLILIDLLTGKS--PADAD 880
PE K K + D++ G ++ ++ G+ P D+D
Sbjct: 193 PELLVGDVKYGKAV----DVWAIGCLVTEMFMGEPLFPGDSD 230
>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase
pdb|3ZUT|B Chain B, The Structure Of Ost1 (D160a) Kinase
Length = 362
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 6/145 (4%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNIVR V + +V EY G EL E + N + + + + +
Sbjct: 72 LRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYC 131
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-----YCTDSKSINSSAYVAPETKESK 852
+ V D+ ++DG P L++ G + + ++ + AY+APE K
Sbjct: 132 HAMQVCHRDLKLENTLLDGSPAPRLKICAFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKK 191
Query: 853 DITEK-GDIYGFGLILIDLLTGKSP 876
+ K D++ G+ L +L G P
Sbjct: 192 EYDGKVADVWSCGVTLYVMLVGAYP 216
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K I ++ F + KL HP +V+L+GVC + LV+E++E LS+
Sbjct: 32 VAIKTIREGAMSEEDFIEEAEVMMKL-SHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDY 90
Query: 772 LRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
LR + E + + + + + +L C V+ D++ +V G+++ +++S
Sbjct: 91 LRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLV-GENQV-IKVSDF 145
Query: 828 GLA-YCTDSKSINSSA------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPAD 878
G+ + D + +S+ + +PE + K D++ FG+++ ++ + GK P +
Sbjct: 146 GMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYE 204
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K I ++ F + KL HP +V+L+GVC + LV+E++E LS+
Sbjct: 37 VAIKTIREGAMSEEDFIEEAEVMMKL-SHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDY 95
Query: 772 LRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
LR + E + + + + + +L C V+ D++ +V G+++ +++S
Sbjct: 96 LRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLV-GENQV-IKVSDF 150
Query: 828 GLA-YCTDSKSINSSA------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPAD 878
G+ + D + +S+ + +PE + K D++ FG+++ ++ + GK P +
Sbjct: 151 GMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYE 209
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGI----AKAL 791
K HPNIVRL GVC ++ Y+V E ++G + LR R K + + A +
Sbjct: 167 KQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGM 226
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA--------Y 843
+L C + D++ +V K+ L++S G++ +S +
Sbjct: 227 EYLESKC---CIHRDLAARNCLVTEKNV--LKISDFGMSREEADGVYAASGGLRQVPVKW 281
Query: 844 VAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
APE + + D++ FG++L + + G SP
Sbjct: 282 TAPEALNYGRYSSESDVWSFGILLWETFSLGASP 315
>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680
Length = 292
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL-SEVLRNLSWERRRKVAI--GIAKALRFL 794
+ HPNI+RL+ + YL+ EY EL E+ ++ +++ +R I +A AL +
Sbjct: 80 LHHPNILRLYNYFYDRRRIYLILEYAPRGELYKELQKSCTFDEQRTATIMEELADALMYC 139
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHL-----RLSVPGLAYCTDSKSINSSAYVAPETK 849
H V+ D+ P +++ K E + + P L T +++ Y+ PE
Sbjct: 140 H---GKKVIHRDIKPENLLLGLKGELKIADFGWSVHAPSLRRKTMCGTLD---YLPPEMI 193
Query: 850 ESKDITEKGDIYGFGLILIDLLTGKSPADA 879
E + EK D++ G++ +LL G P ++
Sbjct: 194 EGRMHNEKVDLWCIGVLCYELLVGNPPFES 223
>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine
Length = 353
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELS---EVLRNLSWERRRKVAIGIAKALRFLHF 796
HP + +L ++ + V E++ G +L + R R R A I AL FLH
Sbjct: 83 HPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLH- 141
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY------CTDSKSINSSAYVAPETKE 850
++ D+ V++D E H +L+ G+ T + + Y+APE +
Sbjct: 142 --DKGIIYRDLKLDNVLLD--HEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQ 197
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
D + G++L ++L G +P +A+
Sbjct: 198 EMLYGPAVDWWAMGVLLYEMLCGHAPFEAE 227
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 101/421 (23%), Positives = 163/421 (38%), Gaps = 54/421 (12%)
Query: 230 LNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPK--SILGLKSLVSFDLSDNY 287
+N++DL N++ SF L +L++L + Q + G + + + GL SL+ L N
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQ-QTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 288 LSGEIPEEVIQLQNLEILHLFSNNFTGKIPSS--LASMPKLQVLQLWSNQFSGEIPSNLG 345
L NLE+L L N G + S + L++L L N P++
Sbjct: 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150
Query: 346 -KQNNLTVIDLSTNFLTGKIPETLCD-SGSLFKLILFSN-SLEGKIPNSLSTCKS---LR 399
V+DL+ N + E L + G F L+ S+ +L+ L K +
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210
Query: 400 RVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGK 459
+ LSG E + +F I+G + I + M S + NF K
Sbjct: 211 NTSITTLDLSGNGFKE--SMAKRFFDAIAGTKIQSLILSNSYNMGS----SFGHTNF--K 262
Query: 460 LPDSFGSDQLE-----NLDLSENRFSGTIPRSFGRLSELMQLKISRNKL----------- 503
PD+F LE DLS+++ + F ++L QL +++N++
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322
Query: 504 ------------FGDIPEEL-SSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQ 550
G I + + KL LDLS N + S +P L +L L NQ
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382
Query: 551 LSGKIPQTLGRVASLVQVNISHNHFHGSLPST---GAFLAINATAVAGNDLCGGDSTSGL 607
L R+ SL ++ + N + S P +L N+ G+ C G SG
Sbjct: 383 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG---SGK 439
Query: 608 P 608
P
Sbjct: 440 P 440
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 129/313 (41%), Gaps = 43/313 (13%)
Query: 227 LTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIP-----KSILGLKSLVSF 281
L+SL L L YN +F L+NL L L Q L G++ K + L+ LV
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV-- 135
Query: 282 DLSDNYLSGEIPEEV-IQLQNLEILHLFSN-----------NFTGKIPS--SLASMPKLQ 327
L DN + P + ++ +L L N NF GK + L+S+
Sbjct: 136 -LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194
Query: 328 VLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDS--GSLFKLILFSNSLE 385
+ + W E N K ++T +DLS N + + D+ G+ + ++ SNS
Sbjct: 195 MNEYW---LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251
Query: 386 G---------KIPNSLS----TCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDL 432
K P++ + ++ L +++ L S F+ + L ++ N++
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311
Query: 433 SGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS--DQLENLDLSENRFSGTIPRSFGRL 490
+ W +T L LNL+ NF G + D+LE LDLS N +SF L
Sbjct: 312 NKIDDNAFWGLTHLLKLNLS-QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370
Query: 491 SELMQLKISRNKL 503
L +L + N+L
Sbjct: 371 PNLKELALDTNQL 383
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 156 SGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNN 215
SG+K DL + + + S+ T L+ TLA N++ L +L + L N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 216 LSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSIL 273
L + +L L LDL YN++ SF L NL+ L L N+L S+P I
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIF 391
>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant
V617f (Mg- Atp-Bound Form)
Length = 289
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 112/273 (41%), Gaps = 39/273 (14%)
Query: 694 KGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE 753
KGV ++ + ++K + + + SF+ S KL H ++V +GVC
Sbjct: 26 KGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKL-SHKHLVLNYGVCFCG 84
Query: 754 KAAYLVYEYIEGKELSEVLR------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDV 807
LV E+++ L L+ N+ W + +VA +A A+ FL +++ G+V
Sbjct: 85 DENILVQEFVKFGSLDTYLKKNKNCINILW--KLEVAKQLAWAMHFLE---ENTLIHGNV 139
Query: 808 SPGKVIVDGKDE------PHLRLSVPGLAYCTDSKSI--NSSAYVAPETKES-KDITEKG 858
+++ +++ P ++LS PG++ K I +V PE E+ K++
Sbjct: 140 CAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQERIPWVPPECIENPKNLNLAT 199
Query: 859 DIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE 918
D + FG L ++ +G D +S + Y D H +
Sbjct: 200 DKWSFGTTLWEICSG---GDKPLSALDS--QRKLQFYEDRH-------------QLPAPK 241
Query: 919 IVEIMNLALHCTAGDPTARPCASDVTKTLESCF 951
E+ NL +C +P RP + + L S F
Sbjct: 242 AAELANLINNCMDYEPDHRPSFRAIIRDLNSLF 274
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 166 NVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIG 225
N+ + +P I T Q L +NQ+ P L NL+ +Y N L+ IP +
Sbjct: 21 NIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVF 77
Query: 226 D-LTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQN 262
D LT L LDL N+L +F NL +L +++LY N
Sbjct: 78 DKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 228 TSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILG-LKSLVSFDLSDN 286
T L L N +T P F +L NL+ L+ NKLT +IP + L L DL+DN
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDN 91
Query: 287 YLSGEIPEEVI-QLQNLEILHLFSN 310
+L IP L++L ++L++N
Sbjct: 92 HLK-SIPRGAFDNLKSLTHIYLYNN 115
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 177 SNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLV 236
+ T L SN+ + +P+ I R++ +YL N + +PKE+ + L +DL
Sbjct: 6 TECTCLDTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLS 62
Query: 237 YNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPE 294
N ++ SF N++ L L L N+L P++ GLKSL L N +S +PE
Sbjct: 63 NNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPE 119
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%)
Query: 148 IPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLK 207
+P+E+ ++ L ++DL N + S SN+T L L+ N+L PR L++L+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 208 WIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNL 240
+ L N++S DL++L+HL + N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 469 LENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLS 528
L+ + N+ +P+ R ++ +L + N+ F +P+ELS+ K L +DLSNN++S
Sbjct: 11 LDTVVRCSNKGLKVLPKGIPR--DVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRIS 67
Query: 529 GHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAF--- 585
S S M L L LS N+L P+T + SL +++ N S+ GAF
Sbjct: 68 TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI--SVVPEGAFNDL 125
Query: 586 LAINATAVAGNDL 598
A++ A+ N L
Sbjct: 126 SALSHLAIGANPL 138
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 329 LQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKI 388
L L NQF+ +P L +LT+IDLS N ++ ++ + L LIL N L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 389 PNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDL 432
P + KSLR + L N +S F L + L I N L
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%)
Query: 449 LNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIP 508
L L GN F+ + L +DLS NR S +SF +++L+ L +S N+L P
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Query: 509 EELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQL 551
K L L L N +S + +++ L L + N L
Sbjct: 96 RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 154 SFSGLKVLDLGGNVLVGE----------IPLSISNITSLQIFTLASNQLIGSIPREIGQL 203
S GLKVL G V E +P +SN L + L++N++ + +
Sbjct: 18 SNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM 77
Query: 204 RNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNK 263
L + L YN L P+ L SL L L N+++ +F +LS L +L + N
Sbjct: 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137
Query: 264 L 264
L
Sbjct: 138 L 138
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K I ++ F + KL HP +V+L+GVC + LV+E++E LS+
Sbjct: 34 VAIKTIREGAMSEEDFIEEAEVMMKL-SHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDY 92
Query: 772 LRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
LR + E + + + + + +L SV+ D++ +V G+++ +++S
Sbjct: 93 LRTQRGLFAAETLLGMCLDVCEGMAYLE---EASVIHRDLAARNCLV-GENQV-IKVSDF 147
Query: 828 GLA-YCTDSKSINSSA------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPAD 878
G+ + D + +S+ + +PE + K D++ FG+++ ++ + GK P +
Sbjct: 148 GMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYE 206
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 53/215 (24%), Positives = 92/215 (42%), Gaps = 37/215 (17%)
Query: 720 NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAA-YLVYEYIEGKELSEVLRN---- 774
N T +F + S +L H N+V+L GV EK Y+V EY+ L + LR+
Sbjct: 39 NDATAQAFLAEASVMTQL-RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRS 97
Query: 775 -LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL---A 830
L + K ++ + +A+ +L + V D++ V+V ++ ++S GL A
Sbjct: 98 VLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLV--SEDNVAKVSDFGLTKEA 152
Query: 831 YCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP------------- 876
T + APE K + K D++ FG++L ++ + G+ P
Sbjct: 153 SSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRV 212
Query: 877 -----ADADFGVHESIVEWARYCYSDCHLDTWVDP 906
DA G ++ E + C+ HLD + P
Sbjct: 213 EKGYKMDAPDGCPPAVYEVMKNCW---HLDAAMRP 244
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 53/215 (24%), Positives = 92/215 (42%), Gaps = 37/215 (17%)
Query: 720 NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAA-YLVYEYIEGKELSEVLRN---- 774
N T +F + S +L H N+V+L GV EK Y+V EY+ L + LR+
Sbjct: 54 NDATAQAFLAEASVMTQL-RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRS 112
Query: 775 -LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL---A 830
L + K ++ + +A+ +L + V D++ V+V ++ ++S GL A
Sbjct: 113 VLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLV--SEDNVAKVSDFGLTKEA 167
Query: 831 YCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP------------- 876
T + APE K + K D++ FG++L ++ + G+ P
Sbjct: 168 SSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRV 227
Query: 877 -----ADADFGVHESIVEWARYCYSDCHLDTWVDP 906
DA G ++ E + C+ HLD + P
Sbjct: 228 EKGYKMDAPDGCPPAVYEVMKNCW---HLDAAMRP 259
>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|B Chain B, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|C Chain C, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|D Chain D, Structure Of Human Phosphorylase Kinase, Gamma 2
Length = 365
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 19/151 (12%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHF 796
HP+I+ L S +LV++ + EL + L LS + R + + +A+ FLH
Sbjct: 159 HPHIITLIDSYESSSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLH- 217
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----SKSINSSAYVAPET-KE 850
+ ++V D+ P +++D D +RLS G + + + + Y+APE K
Sbjct: 218 --ANNIVHRDLKPENILLD--DNMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKC 273
Query: 851 SKDITEKG-----DIYGFGLILIDLLTGKSP 876
S D T G D++ G+IL LL G P
Sbjct: 274 SMDETHPGYGKEVDLWACGVILFTLLAGSPP 304
>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit
Of Camp- Dependent Protein Kinase
Length = 350
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+AP SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPAIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
pdb|2I0E|B Chain B, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
Length = 353
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 65/146 (44%), Gaps = 8/146 (5%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSP 800
P + +LH ++ Y V EY+ G +L ++ + + A+ L F S
Sbjct: 81 PFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSK 140
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY------CTDSKSINSSAYVAPETKESKDI 854
++ D+ V++D E H++++ G+ T + Y+APE +
Sbjct: 141 GIIYRDLKLDNVMLDS--EGHIKIADFGMCKENIWDGVTTKXFCGTPDYIAPEIIAYQPY 198
Query: 855 TEKGDIYGFGLILIDLLTGKSPADAD 880
+ D + FG++L ++L G++P + +
Sbjct: 199 GKSVDWWAFGVLLYEMLAGQAPFEGE 224
>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With
Staurosporine At 2a Resolution
Length = 345
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 14/146 (9%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELS---EVLRNLSWERRRKVAIGIAKALRFLHF 796
HP + + ++++ + V EY+ G +L + R A I L+FLH
Sbjct: 77 HPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLH- 135
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKS---INSSAYVAPETKE 850
S +V D+ +++D + H++++ G+ D+K+ + Y+APE
Sbjct: 136 --SKGIVYRDLKLDNILLDK--DGHIKIADFGMCKENMLGDAKTNXFCGTPDYIAPEILL 191
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
+ D + FG++L ++L G+SP
Sbjct: 192 GQKYNHSVDWWSFGVLLYEMLIGQSP 217
>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
pdb|3MA6|B Chain B, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
Length = 298
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 23/158 (14%)
Query: 733 QFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL-SEVLRNLSWERRRKVAIGIAKAL 791
Q K + HPNI++L+ + YLV E G EL E++ R+R + A+ +
Sbjct: 84 QLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEII-----SRKRFSEVDAARII 138
Query: 792 R-------FLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVPGLAYCTDSK-----SI 838
R ++H +V D+ P ++++ K + ++R+ GL+ ++ I
Sbjct: 139 RQVLSGITYMH---KNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKI 195
Query: 839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
++ Y+APE EK D++ G+IL LL+G P
Sbjct: 196 GTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPP 232
>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
pdb|1SZM|B Chain B, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
Length = 350
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---ERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY G E+ LR + R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 159 -SLDLIYRDLKPENLMID--QQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDV|A Chain A, Structure Of Pka-Pkb Chimera Complexed With A-443654
pdb|2UVX|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 7-Azaindole
pdb|2UW4|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
2-(4-(5-Methyl- 1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW7|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|4AXA|A Chain A, Structure Of Pka-pkb Chimera Complexed With
(1s)-2-amino-1-(
4-chlorophenyl)-1-(4-(1h-pyrazol-4-yl)phenyl)ethan-1-ol
Length = 351
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P + +L + Y+V EY G E+ LR + S R A I +LH
Sbjct: 102 PFLTKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 160 -SLDLIYRDLKPENLMID--QQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252
>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
Length = 351
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P + +L + Y+V EY G E+ LR + S R A I +LH
Sbjct: 102 PFLTKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 160 -SLDLIYRDLKPENLMID--QQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252
>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 361
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 12/148 (8%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFL 794
+ HPNIVR V + +V EY G EL E + N S + R + + +
Sbjct: 71 LRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYC 130
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHLRL-----SVPGLAYCTDSKSINSSAYVAPETK 849
H + V D+ ++DG P L++ S + + ++ + AY+APE
Sbjct: 131 H---AMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVL 187
Query: 850 ESKDITEK-GDIYGFGLILIDLLTGKSP 876
K+ K D++ G+ L +L G P
Sbjct: 188 LKKEYDGKVADVWSCGVTLYVMLVGAYP 215
>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain
Length = 332
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 17/104 (16%)
Query: 783 VAIGIAKALRFLH---------------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
+ I IA+A+ FLH F V GD G V +DE + P
Sbjct: 169 IFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDF--GLVTAMDQDEEEQTVLTP 226
Query: 828 GLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLL 871
AY T + + Y++PE + + K DI+ GLIL +LL
Sbjct: 227 MPAYATHXGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELL 270
>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution.
pdb|2JED|B Chain B, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution
Length = 352
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 14/146 (9%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELS---EVLRNLSWERRRKVAIGIAKALRFLHF 796
HP + + ++++ + V EY+ G +L + R A I L+FLH
Sbjct: 78 HPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLH- 136
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKS---INSSAYVAPETKE 850
S +V D+ +++D + H++++ G+ D+K+ + Y+APE
Sbjct: 137 --SKGIVYRDLKLDNILLDK--DGHIKIADFGMCKENMLGDAKTNEFCGTPDYIAPEILL 192
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
+ D + FG++L ++L G+SP
Sbjct: 193 GQKYNHSVDWWSFGVLLYEMLIGQSP 218
>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6
pdb|3UC4|B Chain B, The Crystal Structure Of Snf1-Related Kinase 2.6
Length = 362
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 6/145 (4%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNIVR V + +V EY G EL E + N + + + + +
Sbjct: 72 LRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYC 131
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRL-----SVPGLAYCTDSKSINSSAYVAPETKESK 852
+ V D+ ++DG P L++ S + + ++ + AY+APE K
Sbjct: 132 HAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKK 191
Query: 853 DITEK-GDIYGFGLILIDLLTGKSP 876
+ K D++ G+ L +L G P
Sbjct: 192 EYDGKVADVWSCGVTLYVMLVGAYP 216
>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3
Length = 361
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 6/145 (4%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
+ HPNIVR V + ++ EY G EL E + N + + L + +
Sbjct: 73 LRHPNIVRFKEVILTPTHLAIIMEYASGGELYERICNAGRFSEDEARFFFQQLLSGVSYC 132
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRL-----SVPGLAYCTDSKSINSSAYVAPETKESK 852
S + D+ ++DG P L++ S + + ++ + AY+APE +
Sbjct: 133 HSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQ 192
Query: 853 DITEK-GDIYGFGLILIDLLTGKSP 876
+ K D++ G+ L +L G P
Sbjct: 193 EYDGKIADVWSCGVTLYVMLVGAYP 217
>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In
A Putative Auto-Inhibition State
Length = 340
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 97/206 (47%), Gaps = 24/206 (11%)
Query: 691 RGKKGVSSSYKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGV 749
RG GV K+R + + VK+I VN+ D+ + + P V +G
Sbjct: 61 RGAYGVVE--KMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGA 118
Query: 750 CRSEKAAYLVYEYIEG------KELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVV 803
E ++ E ++ K++ + + + + K+A+ I KAL H H SV+
Sbjct: 119 LFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALE--HLHSKLSVI 176
Query: 804 AGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDS--KSINS--SAYVAPETKESKDITEKG 858
DV P V+++ + +++ G++ Y DS K+I++ Y+APE + + ++ +KG
Sbjct: 177 HRDVKPSNVLINALGQ--VKMCDFGISGYLVDSVAKTIDAGCKPYMAPE-RINPELNQKG 233
Query: 859 -----DIYGFGLILIDLLTGKSPADA 879
DI+ G+ +I+L + P D+
Sbjct: 234 YSVKSDIWSLGITMIELAILRFPYDS 259
>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|C Chain C, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|A Chain A, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|C Chain C, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 317
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 22/210 (10%)
Query: 681 SSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIM 739
SS+ + L G ++ YK + + +K++ +D T S+ ++S K +
Sbjct: 3 SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREIS-LMKELK 61
Query: 740 HPNIVRLHGVCRSEKAAYLVYE--------YIEGKELSEVLRNLSWERRRKVAIGIAKAL 791
H NIVRL+ V +E LV+E Y++ + + R L + + + L
Sbjct: 62 HENIVRLYDVIHTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGL 121
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVA 845
F H ++ D+ P ++++ + + L+L GLA T S + + Y A
Sbjct: 122 AFCH---ENKILHRDLKPQNLLINKRGQ--LKLGDFGLARAFGIPVNTFSSEVVTLWYRA 176
Query: 846 PET-KESKDITEKGDIYGFGLILIDLLTGK 874
P+ S+ + DI+ G IL +++TGK
Sbjct: 177 PDVLMGSRTYSTSIDIWSCGCILAEMITGK 206
>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|B Chain B, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|C Chain C, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
Length = 360
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 82/197 (41%), Gaps = 22/197 (11%)
Query: 693 KKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS 752
+KG Y ++ L D VV + DV L P + +LH ++
Sbjct: 40 RKGTEELYAIKILKKD---VVIQDDDVECTMVEK-----RVLALLDKPPFLTQLHSCFQT 91
Query: 753 EKAAYLVYEYIEGKELSEVLRNLSWERRRKV---AIGIAKALRFLHFHCSPSVVAGDVSP 809
Y V EY+ G +L ++ + + + A I+ L FLH ++ D+
Sbjct: 92 VDRLYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISIGLFFLH---KRGIIYRDLKL 148
Query: 810 GKVIVDGKDEPHLRLSVPGLAY------CTDSKSINSSAYVAPETKESKDITEKGDIYGF 863
V++D E H++++ G+ T + + Y+APE + + D + +
Sbjct: 149 DNVMLDS--EGHIKIADFGMCKEHMMDGVTTREFCGTPDYIAPEIIAYQPYGKSVDWWAY 206
Query: 864 GLILIDLLTGKSPADAD 880
G++L ++L G+ P D +
Sbjct: 207 GVLLYEMLAGQPPFDGE 223
>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human
Pdk1 Complex 2
Length = 311
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 91/202 (45%), Gaps = 20/202 (9%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
G+ S+ R LA ++ +K I++ I + P V++ ++ HP V+L+
Sbjct: 41 GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 99
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
+ ++ Y Y + L + +R + S++ R I AL +LH ++
Sbjct: 100 TFQDDEKLYFGLSYAKNGCLLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 156
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
D+ P ++++ ++ H++++ G A +S + ++ YV+PE K ++
Sbjct: 157 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSASKS 214
Query: 858 GDIYGFGLILIDLLTGKSPADA 879
D++ G I+ L+ G P A
Sbjct: 215 SDLWALGCIIYQLVAGLPPFRA 236
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 99/207 (47%), Gaps = 30/207 (14%)
Query: 143 MLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQL--IGSIPREI 200
M+ P +I F L D N+L + + ++T L+ L NQL + I
Sbjct: 314 MVHMLCPSKISPFLHL---DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370
Query: 201 GQLRNLKWIYLGYNNLSGEIPKEIGDLT---SLNHLDLVYNNLTGQI----PPSFGNLSN 253
Q+++L+ + + N++S + K GD + SL L++ N LT I PP
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKK--GDCSWTKSLLSLNMSSNILTDTIFRCLPP------R 422
Query: 254 LRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVI-QLQNLEILHLFSNNF 312
++ L L+ NK+ SIPK ++ L++L +++ N L +P+ + +L +L+ + L +N +
Sbjct: 423 IKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPW 480
Query: 313 TGKIPSSLASMPKLQVLQLWSNQFSGE 339
S P++ L W N+ S +
Sbjct: 481 D-------CSCPRIDYLSRWLNKNSQK 500
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 8/162 (4%)
Query: 232 HLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLT--GSIPKSILGLKSLVSFDLSDNYLS 289
HLD N LT + + G+L+ L L L N+L I + +KSL D+S N +S
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 290 -GEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQN 348
E + ++L L++ SN T I L P+++VL L SN+ IP + K
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLE 444
Query: 349 NLTVIDLSTNFLTGKIPETLCDS-GSLFKLILFSNSLEGKIP 389
L +++++N L +P+ + D SL K+ L +N + P
Sbjct: 445 ALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 30/132 (22%)
Query: 471 NLDLSENRFSGTIPRSFGRLSE--------------------------LMQLKISRNKL- 503
+LD S N + T+ + G L+E L QL IS+N +
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 504 FGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVA 563
+ + + S K L+SL++S+N L+ I L P + LDL N++ IP+ + ++
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLE 444
Query: 564 SLVQVNISHNHF 575
+L ++N++ N
Sbjct: 445 ALQELNVASNQL 456
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 137 LDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSI 196
L++S+N+L+ I + +KVLDL N + IP + + +LQ +ASNQL S+
Sbjct: 404 LNMSSNILTDTIFRCLPP--RIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQL-KSV 459
Query: 197 PREI-GQLRNLKWIYLGYNNLSGEIPK 222
P I +L +L+ I+L N P+
Sbjct: 460 PDGIFDRLTSLQKIWLHTNPWDCSCPR 486
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 33/182 (18%)
Query: 422 VYFLDISGNDLSGRIGEQKWEM--TSLQMLNLAG--NNFSGKLPDSFGSDQLENLDLSEN 477
V++ IS L G++ + ++ TSL+ L++ ++ G P S+ + N+++
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNF 307
Query: 478 RFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSE 537
SGT R+ ++ P ++S + LD SNN L+ + +
Sbjct: 308 TVSGT------RMVHML------------CPSKISP---FLHLDFSNNLLTDTVFENCGH 346
Query: 538 MPVLGQLDLSENQLS--GKIPQTLGRVASLVQVNISHNHF-----HGSLPSTGAFLAINA 590
+ L L L NQL KI + ++ SL Q++IS N G T + L++N
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406
Query: 591 TA 592
++
Sbjct: 407 SS 408
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 23/158 (14%)
Query: 733 QFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL-SEVLRNLSWERRRKVAIGIAKAL 791
Q K + HPNI++L+ + YLV E G EL E++ R+R + A+ +
Sbjct: 78 QLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEII-----SRKRFSEVDAARII 132
Query: 792 R-------FLHFHCSPSVVAGDVSPGKVIVDGK-DEPHLRLSVPGLAYCTDS-----KSI 838
R ++H +V D+ P ++++ K + ++R+ GL+ ++ I
Sbjct: 133 RQVLSGITYMH---KNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKI 189
Query: 839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
++ Y+APE EK D++ G+IL LL+G P
Sbjct: 190 GTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPP 226
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 6/144 (4%)
Query: 129 GSLSRLEILDLSNNMLSG--KIPEEIGSFSGLKVLDLGGNVLVGE-IPLSISNITSLQIF 185
+L RL+ L L N L K+ + S L+ LD+ N L + + S+ +
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433
Query: 186 TLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIP 245
L+SN L GS+ R + +K + L +NN IPK++ L +L L++ N L
Sbjct: 434 NLSSNMLTGSVFRCLPP--KVKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQLKSVPD 490
Query: 246 PSFGNLSNLRYLFLYQNKLTGSIP 269
F L++L+Y++L+ N + P
Sbjct: 491 GVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|C Chain C, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI7|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
pdb|1BLX|A Chain A, P19ink4dCDK6 COMPLEX
pdb|1G3N|A Chain A, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|E Chain E, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 326
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 81/203 (39%), Gaps = 26/203 (12%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL-----IMHPNIVRL 746
G+ +K R L N +FV K + V T + + L HPN+VRL
Sbjct: 20 GEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRL 79
Query: 747 HGVCR-----SEKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHF 796
VC E LV+E+++ ++L+ L + E + + + + L FLH
Sbjct: 80 FDVCTVSRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHS 138
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA-----YVAPETKES 851
H VV D+ P ++V + ++L+ GLA + +S Y APE
Sbjct: 139 H---RVVHRDLKPQNILVTSSGQ--IKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQ 193
Query: 852 KDITEKGDIYGFGLILIDLLTGK 874
D++ G I ++ K
Sbjct: 194 SSYATPVDLWSVGCIFAEMFRRK 216
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 65/146 (44%), Gaps = 8/146 (5%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSP 800
P + +LH ++ Y V EY+ G +L ++ + + A+ L F S
Sbjct: 402 PFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSK 461
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY------CTDSKSINSSAYVAPETKESKDI 854
++ D+ V++D E H++++ G+ T + Y+APE +
Sbjct: 462 GIIYRDLKLDNVMLDS--EGHIKIADFGMCKENIWDGVTTKXFCGTPDYIAPEIIAYQPY 519
Query: 855 TEKGDIYGFGLILIDLLTGKSPADAD 880
+ D + FG++L ++L G++P + +
Sbjct: 520 GKSVDWWAFGVLLYEMLAGQAPFEGE 545
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K I ++ F + KL HP +V+L+GVC + LV E++E LS+
Sbjct: 35 VAIKTIREGAMSEEDFIEEAEVMMKL-SHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDY 93
Query: 772 LRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
LR + E + + + + + +L C V+ D++ +V G+++ +++S
Sbjct: 94 LRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLV-GENQV-IKVSDF 148
Query: 828 GLA-YCTDSKSINSSA------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPAD 878
G+ + D + +S+ + +PE + K D++ FG+++ ++ + GK P +
Sbjct: 149 GMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYE 207
>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of
Camp-Dependent Protein Kinase
Length = 350
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
P +V+L + Y+V EY+ G E+ LR + S R A I +LH
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + +APE SK
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEALAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251
>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor
pdb|3OCB|B Chain B, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor
pdb|3OW4|A Chain A, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|3OW4|B Chain B, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|3QKK|A Chain A, Spirochromane Akt Inhibitors
pdb|3QKL|A Chain A, Spirochromane Akt Inhibitors
pdb|3QKM|A Chain A, Spirocyclic Sulfonamides As Akt Inhibitors
pdb|4EKK|A Chain A, Akt1 With Amp-Pnp
pdb|4EKK|B Chain B, Akt1 With Amp-Pnp
pdb|4EKL|A Chain A, Akt1 With Gdc0068
Length = 341
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 13/146 (8%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
HP + L ++ V EY G EL L R S +R R I AL +LH
Sbjct: 68 HPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLH- 126
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY------CTDSKSINSSAYVAPETKE 850
+VV D+ +++D + H++++ GL T + Y+APE E
Sbjct: 127 -SEKNVVYRDLKLENLMLD--KDGHIKITDFGLCKEGIKDGATMKXFCGTPEYLAPEVLE 183
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
D D +G G+++ +++ G+ P
Sbjct: 184 DNDYGRAVDWWGLGVVMYEMMCGRLP 209
>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363
Length = 340
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 13/146 (8%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
HP + L ++ V EY G EL L R S +R R I AL +LH
Sbjct: 67 HPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLH- 125
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY------CTDSKSINSSAYVAPETKE 850
+VV D+ +++D + H++++ GL T + Y+APE E
Sbjct: 126 -SEKNVVYRDLKLENLMLD--KDGHIKITDFGLCKEGIKDGATMKXFCGTPEYLAPEVLE 182
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
D D +G G+++ +++ G+ P
Sbjct: 183 DNDYGRAVDWWGLGVVMYEMMCGRLP 208
>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate
Peptide And Inhibitor
pdb|3CQW|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate
Peptide And Inhibitor
pdb|3MV5|A Chain A, Crystal Structure Of Akt-1-Inhibitor Complexes
pdb|3MVH|A Chain A, Crystal Structure Of Akt-1-Inhibitor Complexes
Length = 342
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 13/146 (8%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
HP + L ++ V EY G EL L R S +R R I AL +LH
Sbjct: 69 HPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLH- 127
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY------CTDSKSINSSAYVAPETKE 850
+VV D+ +++D + H++++ GL T + Y+APE E
Sbjct: 128 -SEKNVVYRDLKLENLMLD--KDGHIKITDFGLCKEGIKDGATMKXFCGTPEYLAPEVLE 184
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
D D +G G+++ +++ G+ P
Sbjct: 185 DNDYGRAVDWWGLGVVMYEMMCGRLP 210
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 717 IDVNTITTSSFWPDV----SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
+ V ++ S PD + K + H +VRL+ V +++ Y++ EY+E L + L
Sbjct: 40 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 98
Query: 773 RN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
+ L+ + +A IA+ + F+ + + D+ ++V D +++
Sbjct: 99 KTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILV--SDTLSCKIADF 153
Query: 828 GLAYCTDSKSINSS-------AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
GLA + + + APE T K D++ FG++L +++T G+ P
Sbjct: 154 GLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIP 210
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 717 IDVNTITTSSFWPDV----SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
+ V ++ S PD + K + H +VRL+ V +++ Y++ EY+E L + L
Sbjct: 41 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 99
Query: 773 RN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
+ L+ + +A IA+ + F+ + + D+ ++V D +++
Sbjct: 100 KTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILV--SDTLSCKIADF 154
Query: 828 GLAYCTDSKSINSS-------AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
GLA + + + APE T K D++ FG++L +++T G+ P
Sbjct: 155 GLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIP 211
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 717 IDVNTITTSSFWPDV----SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
+ V ++ S PD + K + H +VRL+ V +++ Y++ EY+E L + L
Sbjct: 42 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 100
Query: 773 RN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
+ L+ + +A IA+ + F+ + + D+ ++V D +++
Sbjct: 101 KTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILV--SDTLSCKIADF 155
Query: 828 GLAYCTDSKSINSS-------AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
GLA + + + APE T K D++ FG++L +++T G+ P
Sbjct: 156 GLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIP 212
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 717 IDVNTITTSSFWPDV----SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
+ V ++ S PD + K + H +VRL+ V +++ Y++ EY+E L + L
Sbjct: 40 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 98
Query: 773 RN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
+ L+ + +A IA+ + F+ + + D+ ++V D +++
Sbjct: 99 KTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILV--SDTLSCKIADF 153
Query: 828 GLAYCTDSKSINSS-------AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
GLA + + + APE T K D++ FG++L +++T G+ P
Sbjct: 154 GLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIP 210
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 717 IDVNTITTSSFWPDV----SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
+ V ++ S PD + K + H +VRL+ V +++ Y++ EY+E L + L
Sbjct: 49 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 107
Query: 773 RN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
+ L+ + +A IA+ + F+ + + D+ ++V D +++
Sbjct: 108 KTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILV--SDTLSCKIADF 162
Query: 828 GLAYCTDSKSINSS-------AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
GLA + + + APE T K D++ FG++L +++T G+ P
Sbjct: 163 GLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIP 219
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 717 IDVNTITTSSFWPDV----SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
+ V ++ S PD + K + H +VRL+ V +++ Y++ EY+E L + L
Sbjct: 48 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 106
Query: 773 RN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
+ L+ + +A IA+ + F+ + + D+ ++V D +++
Sbjct: 107 KTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILV--SDTLSCKIADF 161
Query: 828 GLAYCTDSKSINSS-------AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
GLA + + + APE T K D++ FG++L +++T G+ P
Sbjct: 162 GLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIP 218
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 717 IDVNTITTSSFWPDV----SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
+ V ++ S PD + K + H +VRL+ V +++ Y++ EY+E L + L
Sbjct: 46 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 104
Query: 773 RN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
+ L+ + +A IA+ + F+ + + D+ ++V D +++
Sbjct: 105 KTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILV--SDTLSCKIADF 159
Query: 828 GLAYCTDSKSINSS-------AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
GLA + + + APE T K D++ FG++L +++T G+ P
Sbjct: 160 GLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIP 216
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 717 IDVNTITTSSFWPDV----SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
+ V ++ S PD + K + H +VRL+ V +++ Y++ EY+E L + L
Sbjct: 46 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 104
Query: 773 RN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
+ L+ + +A IA+ + F+ + + D+ ++V D +++
Sbjct: 105 KTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILV--SDTLSCKIADF 159
Query: 828 GLAYCTDSKSINSS-------AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
GLA + + + APE T K D++ FG++L +++T G+ P
Sbjct: 160 GLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIP 216
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 717 IDVNTITTSSFWPDV----SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
+ V ++ S PD + K + H +VRL+ V +++ Y++ EY+E L + L
Sbjct: 50 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 108
Query: 773 RN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
+ L+ + +A IA+ + F+ + + D+ ++V D +++
Sbjct: 109 KTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILV--SDTLSCKIADF 163
Query: 828 GLAYCTDSKSINSS-------AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
GLA + + + APE T K D++ FG++L +++T G+ P
Sbjct: 164 GLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIP 220
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 717 IDVNTITTSSFWPDV----SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
+ V ++ S PD + K + H +VRL+ V +++ Y++ EY+E L + L
Sbjct: 40 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 98
Query: 773 RN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
+ L+ + +A IA+ + F+ + + D+ ++V D +++
Sbjct: 99 KTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILV--SDTLSCKIADF 153
Query: 828 GLAYCTDSKSINSS-------AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
GLA + + + APE T K D++ FG++L +++T G+ P
Sbjct: 154 GLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIP 210
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 717 IDVNTITTSSFWPDV----SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
+ V ++ S PD + K + H +VRL+ V +++ Y++ EY+E L + L
Sbjct: 35 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 93
Query: 773 RN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
+ L+ + +A IA+ + F+ + + D+ ++V D +++
Sbjct: 94 KTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILV--SDTLSCKIADF 148
Query: 828 GLAYCTDSKSINSS-------AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
GLA + + + APE T K D++ FG++L +++T G+ P
Sbjct: 149 GLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIP 205
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 717 IDVNTITTSSFWPDV----SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
+ V ++ S PD + K + H +VRL+ V +++ Y++ EY+E L + L
Sbjct: 45 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 103
Query: 773 RN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
+ L+ + +A IA+ + F+ + + D+ ++V D +++
Sbjct: 104 KTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILV--SDTLSCKIADF 158
Query: 828 GLAYCTDSKSINSS-------AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
GLA + + + APE T K D++ FG++L +++T G+ P
Sbjct: 159 GLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIP 215
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 23/158 (14%)
Query: 733 QFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL-SEVLRNLSWERRRKVAIGIAKAL 791
Q K + HPNI++L+ + YLV E G EL E++ R+R + A+ +
Sbjct: 101 QLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEII-----SRKRFSEVDAARII 155
Query: 792 R-------FLHFHCSPSVVAGDVSPGKVIVDGK-DEPHLRLSVPGLAYCTDS-----KSI 838
R ++H +V D+ P ++++ K + ++R+ GL+ ++ I
Sbjct: 156 RQVLSGITYMH---KNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKI 212
Query: 839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
++ Y+APE EK D++ G+IL LL+G P
Sbjct: 213 GTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPP 249
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 23/158 (14%)
Query: 733 QFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL-SEVLRNLSWERRRKVAIGIAKAL 791
Q K + HPNI++L+ + YLV E G EL E++ R+R + A+ +
Sbjct: 102 QLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEII-----SRKRFSEVDAARII 156
Query: 792 R-------FLHFHCSPSVVAGDVSPGKVIVDGK-DEPHLRLSVPGLAYCTDS-----KSI 838
R ++H +V D+ P ++++ K + ++R+ GL+ ++ I
Sbjct: 157 RQVLSGITYMH---KNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKI 213
Query: 839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
++ Y+APE EK D++ G+IL LL+G P
Sbjct: 214 GTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPP 250
>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
pdb|2JAM|B Chain B, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
Length = 304
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 12/193 (6%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
G S + V+ F +K I SS +++ K I H NIV L +
Sbjct: 18 GSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKK-IKHENIVTLEDIYE 76
Query: 752 SEKAAYLVYEYIEGKELSEVL--RNLSWERRRKVAI-GIAKALRFLHFHCSPSVVAGDVS 808
S YLV + + G EL + + R + E+ + I + A+++LH +V D+
Sbjct: 77 STTHYYLVMQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLH---ENGIVHRDLK 133
Query: 809 PGKVIVDGKDE-PHLRLSVPGLAYCTD----SKSINSSAYVAPETKESKDITEKGDIYGF 863
P ++ +E + ++ GL+ S + + YVAPE K ++ D +
Sbjct: 134 PENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSI 193
Query: 864 GLILIDLLTGKSP 876
G+I LL G P
Sbjct: 194 GVITYILLCGYPP 206
>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h-
Purin-6-yl)-benzyl)-amine
pdb|2UVZ|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
C-Phenyl-C-(4-( 9h-Purin-6-Yl)-Phenyl)-Methylamine
pdb|2UW0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 6-(4-(4-(4-
Chloro-Phenyl)-Piperidin-4-Yl)-Phenyl)-9h-Purine
pdb|2UW3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 5-Methyl-4-
Phenyl-1h-Pyrazole
pdb|2UW5|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (R)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (S)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW8|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 2-(4-Chloro-
Phenyl)-2-Phenyl-Ethylamine
pdb|2VNW|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)methanamine
pdb|2VNY|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)amine
pdb|2VO3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
pdb|2VO6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-
Chlorobenzyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Ylamine
Length = 351
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---ERRRKVAIGIAKALRFLHFH 797
P + +L + Y+V EY G E+ LR + R A I +LH
Sbjct: 102 PFLTKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
S ++ D+ P +++D + +++++ G A ++ + Y+APE SK
Sbjct: 160 -SLDLIYRDLKPENLMID--QQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
+ D + G+++ ++ G P AD ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 717 IDVNTITTSSFWPDV----SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
+ V ++ S PD + K + H +VRL+ V +++ Y++ EY+E L + L
Sbjct: 40 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 98
Query: 773 RN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
+ L+ + +A IA+ + F+ + + D+ ++V D +++
Sbjct: 99 KTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILV--SDTLSCKIADF 153
Query: 828 GLAYCTDSKSINSS-------AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
GLA + + + APE T K D++ FG++L +++T G+ P
Sbjct: 154 GLARLIEDAEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIP 210
>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex
With N-(4-
(5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h-
Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide
Length = 446
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 13/146 (8%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
HP + L ++ V EY G EL L R S +R R I AL +LH
Sbjct: 207 HPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLH- 265
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY------CTDSKSINSSAYVAPETKE 850
+VV D+ +++D + H++++ GL T + Y+APE E
Sbjct: 266 -SEKNVVYRDLKLENLMLD--KDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLE 322
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
D D +G G+++ +++ G+ P
Sbjct: 323 DNDYGRAVDWWGLGVVMYEMMCGRLP 348
>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric
Inhibitor
Length = 446
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 13/146 (8%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
HP + L ++ V EY G EL L R S +R R I AL +LH
Sbjct: 210 HPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLH- 268
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY------CTDSKSINSSAYVAPETKE 850
+VV D+ +++D + H++++ GL T + Y+APE E
Sbjct: 269 -SEKNVVYRDLKLENLMLD--KDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLE 325
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
D D +G G+++ +++ G+ P
Sbjct: 326 DNDYGRAVDWWGLGVVMYEMMCGRLP 351
>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d)
Length = 290
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 20/204 (9%)
Query: 691 RGKKGVSSSYKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGV 749
RG GV K+R + + VK+I VN+ D+ + + P V +G
Sbjct: 17 RGAYGVVE--KMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGA 74
Query: 750 CRSEKAAYLVYEYIEG------KELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVV 803
E ++ E ++ K++ + + + + K+A+ I KAL H H SV+
Sbjct: 75 LFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALE--HLHSKLSVI 132
Query: 804 AGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKSINS--SAYVAPETKESKDITEKG-- 858
DV P V+++ + + + G +K I++ Y+APE + + ++ +KG
Sbjct: 133 HRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDIDAGCKPYMAPE-RINPELNQKGYS 191
Query: 859 ---DIYGFGLILIDLLTGKSPADA 879
DI+ G+ +I+L + P D+
Sbjct: 192 VKSDIWSLGITMIELAILRFPYDS 215
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 80/203 (39%), Gaps = 21/203 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL---IMHPNIVRLHG 748
GK + Y+ S+ ++ +K +ID + + V K+ + HP+I+ L+
Sbjct: 20 GKGSFAGVYRAESIHTGLEVAIK-MIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYN 78
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVA 804
YLV E E++ L+N S R I + +LH H ++
Sbjct: 79 YFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSH---GILH 135
Query: 805 GDVSPGKVIVDGKDEPHL-------RLSVPGLAYCTDSKSINSSAYVAPETKESKDITEK 857
D++ +++ + +L +P + T + N Y++PE +
Sbjct: 136 RDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPN---YISPEIATRSAHGLE 192
Query: 858 GDIYGFGLILIDLLTGKSPADAD 880
D++ G + LL G+ P D D
Sbjct: 193 SDVWSLGCMFYTLLIGRPPFDTD 215
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 46/218 (21%), Positives = 87/218 (39%), Gaps = 44/218 (20%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
GK ++ Y + + M VK + D F + L H +IV+ +GVC
Sbjct: 29 GKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNL-QHEHIVKFYGVCG 87
Query: 752 SEKAAYLVYEYIEGKELSEVLRNLSWE---------RRRKVAIGIAKALRFLHFHCSPSV 802
+V+EY++ +L++ LR + R+ K +G+++ L
Sbjct: 88 DGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLH---------- 137
Query: 803 VAGDVSPGKVIVDGKDEPHLRLSVP---------------GLA---YCTDSKSINSSA-- 842
+A ++ G V + + H L+ G++ Y TD +
Sbjct: 138 IASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTML 197
Query: 843 ---YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
++ PE+ + T + D++ FG+IL ++ T GK P
Sbjct: 198 PIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQP 235
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 31/157 (19%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWE----RRRKVAIGIAKALRFL- 794
HPNI+RL GV K +V EY+E L LR + + + GIA +++L
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS 164
Query: 795 -----HFHCSPSVV---------AGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINS 840
H + + D G+V+ D P AY T I
Sbjct: 165 DMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDD----------PEAAYTTRGGKI-P 213
Query: 841 SAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ +PE + T D++ +G++L ++++ G+ P
Sbjct: 214 IRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERP 250
>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|B Chain B, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 308
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 49/203 (24%), Positives = 81/203 (39%), Gaps = 26/203 (12%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL-----IMHPNIVRL 746
G+ +K R L N +FV K + V T + + L HPN+VRL
Sbjct: 20 GEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRL 79
Query: 747 HGVCR-----SEKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHF 796
VC E LV+E+++ ++L+ L + E + + + + L FLH
Sbjct: 80 FDVCTVSRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHS 138
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA-----YVAPETKES 851
H VV D+ P ++V + ++L+ GLA + +S Y APE
Sbjct: 139 H---RVVHRDLKPQNILVTSSGQ--IKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQ 193
Query: 852 KDITEKGDIYGFGLILIDLLTGK 874
D++ G I ++ K
Sbjct: 194 SSYATPVDLWSVGCIFAEMFRRK 216
>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|3NUX|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|4AUA|A Chain A, Liganded X-ray Crystal Structure Of Cyclin Dependent
Kinase 6 (cdk6)
pdb|4EZ5|A Chain A, Cdk6 (monomeric) In Complex With Inhibitor
Length = 307
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 49/203 (24%), Positives = 81/203 (39%), Gaps = 26/203 (12%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL-----IMHPNIVRL 746
G+ +K R L N +FV K + V T + + L HPN+VRL
Sbjct: 20 GEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRL 79
Query: 747 HGVCR-----SEKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHF 796
VC E LV+E+++ ++L+ L + E + + + + L FLH
Sbjct: 80 FDVCTVSRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHS 138
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA-----YVAPETKES 851
H VV D+ P ++V + ++L+ GLA + +S Y APE
Sbjct: 139 H---RVVHRDLKPQNILVTSSGQ--IKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQ 193
Query: 852 KDITEKGDIYGFGLILIDLLTGK 874
D++ G I ++ K
Sbjct: 194 SSYATPVDLWSVGCIFAEMFRRK 216
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 17/150 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLH 795
HPNI+RL GV + A +V EY+E L LR + + + G+ +R+L
Sbjct: 109 HPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYL- 167
Query: 796 FHCSPSVVAGDVSPGKVIVDG------KDEPHLRL--SVPGLAYCTDSKSINSSAYVAPE 847
V D++ V+VD D R+ P AY T I + APE
Sbjct: 168 --SDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKI-PIRWTAPE 224
Query: 848 TKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ + D++ FG+++ ++L G+ P
Sbjct: 225 AIAFRTFSSASDVWSFGVVMWEVLAYGERP 254
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 129/333 (38%), Gaps = 78/333 (23%)
Query: 657 EDGIWEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKI 716
ED WE N +GK+L E +G+ G ++ V K+
Sbjct: 14 EDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTT-------------VAVKM 60
Query: 717 IDVNTITTSSFWPDVSQFG--KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN 774
+ N + S +S+F K + HP++++L+G C + L+ EY + L LR
Sbjct: 61 LKENA-SPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRE 119
Query: 775 -------------------LSWERRRKVAIG--------IAKALRFLHFHCSPSVVAGDV 807
L R + +G I++ +++L S+V D+
Sbjct: 120 SRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYL---AEMSLVHRDL 176
Query: 808 SPGKVIV-DGKDEPHLRLSVPGLA---YCTDSKSINSSA-----YVAPETKESKDITEKG 858
+ ++V +G+ +++S GL+ Y DS S ++A E+ T +
Sbjct: 177 AARNILVAEGR---KMKISDFGLSRDVYEEDSXVKRSQGRIPVKWMAIESLFDHIYTTQS 233
Query: 859 DIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGH-VSSIQ 916
D++ FG++L +++T G +P Y + + GH +
Sbjct: 234 DVWSFGVLLWEIVTLGGNP------------------YPGIPPERLFNLLKTGHRMERPD 275
Query: 917 NEIVEIMNLALHCTAGDPTARPCASDVTKTLES 949
N E+ L L C +P RP +D++K LE
Sbjct: 276 NCSEEMYRLMLQCWKQEPDKRPVFADISKDLEK 308
>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|C Chain C, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 406
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 33/186 (17%)
Query: 724 TSSFWP--DVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLS----W 777
++ FW D+ F P +V+L + ++ Y+V EY+ G +L ++ N W
Sbjct: 118 SAFFWEERDIMAFAN---SPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVPEKW 174
Query: 778 ERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS---------VPG 828
R + + AL +H S + DV P +++D HL+L+ G
Sbjct: 175 ARFYTAEVVL--ALDAIH---SMGFIHRDVKPDNMLLDKS--GHLKLADFGTCMKMNKEG 227
Query: 829 LAYCTDSKSINSSAYVAPETKESKD----ITEKGDIYGFGLILIDLLTGKSP--ADADFG 882
+ C ++ + Y++PE +S+ + D + G+ L ++L G +P AD+ G
Sbjct: 228 MVRC--DTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVG 285
Query: 883 VHESIV 888
+ I+
Sbjct: 286 TYSKIM 291
>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|B Chain B, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|C Chain C, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|D Chain D, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3TV7|A Chain A, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|B Chain B, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|C Chain C, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|D Chain D, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TWJ|A Chain A, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|B Chain B, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|C Chain C, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|D Chain D, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
Length = 410
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 33/186 (17%)
Query: 724 TSSFWP--DVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLS----W 777
++ FW D+ F P +V+L + ++ Y+V EY+ G +L ++ N W
Sbjct: 113 SAFFWEERDIMAFAN---SPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVPEKW 169
Query: 778 ERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS---------VPG 828
R + + AL +H S + DV P +++D HL+L+ G
Sbjct: 170 ARFYTAEVVL--ALDAIH---SMGFIHRDVKPDNMLLDKS--GHLKLADFGTCMKMNKEG 222
Query: 829 LAYCTDSKSINSSAYVAPETKESKD----ITEKGDIYGFGLILIDLLTGKSP--ADADFG 882
+ C ++ + Y++PE +S+ + D + G+ L ++L G +P AD+ G
Sbjct: 223 MVRC--DTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVG 280
Query: 883 VHESIV 888
+ I+
Sbjct: 281 TYSKIM 286
>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ESM|B Chain B, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ETK|A Chain A, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETK|B Chain B, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETR|A Chain A, Crystal Structure Of Rock I Bound To Y-27632
pdb|2ETR|B Chain B, Crystal Structure Of Rock I Bound To Y-27632
pdb|3D9V|A Chain A, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3D9V|B Chain B, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3NCZ|A Chain A, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|B Chain B, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|C Chain C, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|D Chain D, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NDM|A Chain A, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|B Chain B, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|C Chain C, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|D Chain D, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
Length = 415
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 33/186 (17%)
Query: 724 TSSFWP--DVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLS----W 777
++ FW D+ F P +V+L + ++ Y+V EY+ G +L ++ N W
Sbjct: 118 SAFFWEERDIMAFAN---SPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVPEKW 174
Query: 778 ERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS---------VPG 828
R + + AL +H S + DV P +++D HL+L+ G
Sbjct: 175 ARFYTAEVVL--ALDAIH---SMGFIHRDVKPDNMLLDKS--GHLKLADFGTCMKMNKEG 227
Query: 829 LAYCTDSKSINSSAYVAPETKESKD----ITEKGDIYGFGLILIDLLTGKSP--ADADFG 882
+ C ++ + Y++PE +S+ + D + G+ L ++L G +P AD+ G
Sbjct: 228 MVRC--DTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVG 285
Query: 883 VHESIV 888
+ I+
Sbjct: 286 TYSKIM 291
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWE----RRRKVAIGIAKALRFLH 795
HPNI+RL GV K +V EY+E L LR + + + GIA +++L
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYL- 163
Query: 796 FHCSPSVVAGDVSPGKVIVDGK------DEPHLRL--SVPGLAYCTDSKSINSSAYVAPE 847
V D++ ++++ D R+ P AY T I + +PE
Sbjct: 164 --SDMGYVHRDLAARNILINSNLVCKVSDFGLARVLEDDPEAAYTTRGGKI-PIRWTSPE 220
Query: 848 TKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ T D++ +G++L ++++ G+ P
Sbjct: 221 AIAYRKFTSASDVWSYGIVLWEVMSYGERP 250
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Query: 458 GKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKL 517
K+PD S +N+DLS N SF SEL L +SR ++ + L
Sbjct: 24 SKVPDDIPSST-KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82
Query: 518 VSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHG 577
+L L+ N + P S S + L L E +L+ +G++ +L ++N++HN H
Sbjct: 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142
Query: 578 -SLPS 581
LP+
Sbjct: 143 CKLPA 147
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 121/476 (25%), Positives = 197/476 (41%), Gaps = 50/476 (10%)
Query: 128 IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTL 187
+ S L+ LDLS + + L L L GN + P S S +TSL+
Sbjct: 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111
Query: 188 ASNQLIGSIPREIGQLRNLKWIYLGYNNL-SGEIPKEIGDLTSLNHLDLVYNNLTGQIPP 246
+L IGQL LK + + +N + S ++P +LT+L H+DL YN +
Sbjct: 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ---TI 168
Query: 247 SFGNLSNLRY-------LFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQL 299
+ +L LR L + N + ++ G+K L L N+ S I + L
Sbjct: 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTC--L 225
Query: 300 QNLEILHL-------FSNNFTGKI--PSSLASMPKLQVLQL---WSNQFSGEIPS--NLG 345
QNL LH+ F + +I PS + + + + + ++N FS +I L
Sbjct: 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285
Query: 346 KQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPN-SLSTCKSLRRVRLQ 404
+ +++ +S +L S S+ + L + P L KSL L
Sbjct: 286 NVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL------KQFPTLDLPFLKSL---TLT 336
Query: 405 NNRLSGELSSEFTRLPLVYFLDISGNDL--SGRIGEQKWEMTSLQMLNLAGNNFSGKLPD 462
N+ G +S + LP + +LD+S N L SG SL+ L+L+ N +
Sbjct: 337 MNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN 394
Query: 463 SFGSDQLENLDLSENRFSGTIPRS-FGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLD 521
G ++L++LD + S F L +L+ L IS D L +L
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454
Query: 522 LSNNQLSGHIPASL-SEMPVLGQLDLSENQL---SGKIPQTLGRVASLVQVNISHN 573
++ N + +++ + L LDLS+ QL S + TL R+ L N+SHN
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL---NMSHN 507
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 54/131 (41%), Gaps = 8/131 (6%)
Query: 414 SEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNF-SGKLPDSFG-SDQLEN 471
S F L + +LDIS + +TSL L +AGN+F L + F + L
Sbjct: 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477
Query: 472 LDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSG-- 529
LDLS+ + F L L L +S N L + L +LD S N++
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537
Query: 530 ----HIPASLS 536
H P SL+
Sbjct: 538 GILQHFPKSLA 548
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 733 QFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL-SEVLRNLSWERRRKVAIGIAKAL 791
Q K + HPNI +L+ + YLV E G EL E++ R+R + A+ +
Sbjct: 78 QLLKQLDHPNIXKLYEFFEDKGYFYLVGEVYTGGELFDEII-----SRKRFSEVDAARII 132
Query: 792 RF----LHFHCSPSVVAGDVSPGKVIVDGK-DEPHLRLSVPGL-----AYCTDSKSINSS 841
R + + +V D+ P ++++ K + ++R+ GL A I ++
Sbjct: 133 RQVLSGITYXHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKXKDKIGTA 192
Query: 842 AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
Y+APE EK D++ G+IL LL+G P
Sbjct: 193 YYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPP 226
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 52/215 (24%), Positives = 91/215 (42%), Gaps = 37/215 (17%)
Query: 720 NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAA-YLVYEYIEGKELSEVLRN---- 774
N T +F + S +L H N+V+L GV EK Y+V EY+ L + LR+
Sbjct: 45 NDATAQAFLAEASVMTQL-RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRS 103
Query: 775 -LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL---A 830
L + K ++ + +A+ +L + V D++ V+V ++ ++S GL A
Sbjct: 104 VLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLV--SEDNVAKVSDFGLTKEA 158
Query: 831 YCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP------------- 876
T + APE + K D++ FG++L ++ + G+ P
Sbjct: 159 SSTQDTGKLPVKWTAPEALREAAFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRV 218
Query: 877 -----ADADFGVHESIVEWARYCYSDCHLDTWVDP 906
DA G ++ E + C+ HLD + P
Sbjct: 219 EKGYKMDAPDGCPPAVYEVMKNCW---HLDAAMRP 250
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 127/531 (23%), Positives = 208/531 (39%), Gaps = 110/531 (20%)
Query: 129 GSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVL--VGEIPLSISNITSLQIFT 186
SL LE LDLS N LS S L L+L GN +GE L S++T LQI
Sbjct: 71 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL-FSHLTKLQILR 129
Query: 187 LASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP 246
+ + I R K+ LT L L++ ++L P
Sbjct: 130 VGNMDTFTKIQR-----------------------KDFAGLTFLEELEIDASDLQSYEPK 166
Query: 247 SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILH 306
S ++ N+ +L L+ + + IL L+ V D++ + E+ + +L+ H
Sbjct: 167 SLKSIQNVSHLILH-------MKQHILLLEIFV--DVTSSVECLELRD-----TDLDTFH 212
Query: 307 LFSNNFTGKIPS----------SLASMPKLQVLQLWSNQFSGEIP-----------SNLG 345
FS TG+ S + QV++L NQ SG + N
Sbjct: 213 -FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL-NQISGLLELEFDDCTLNGVGNFR 270
Query: 346 KQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQN 405
+N VID GK+ + + LF + + S + ++R+ ++N
Sbjct: 271 ASDNDRVID------PGKVETLTIRRLHIPRFYLFYD-----LSTLYSLTERVKRITVEN 319
Query: 406 NRLSGELSSEFTRLPLVYFLDISGN-----DLSGRIGEQKWEMTSLQMLNLAGNNFSG-- 458
+++ L + +LD+S N L E W SLQ L L N+ +
Sbjct: 320 SKVFLVPCLLSQHLKSLEYLDLSENLMVEEYLKNSACEDAWP--SLQTLILRQNHLASLE 377
Query: 459 KLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLF---GDIPEELS-- 512
K ++ + L N+D+S+N F ++P + ++ L +S ++ G IP+ L
Sbjct: 378 KTGETLLTLKNLTNIDISKNSF-HSMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEIL 436
Query: 513 ------------SCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLG 560
+ +L L +S N+L ASL +P+L L +S NQL
Sbjct: 437 DVSNNNLNLFSLNLPQLKELYISRNKLMTLPDASL--LPMLLVLKISRNQLKSVPDGIFD 494
Query: 561 RVASLVQVNISHNHFHGSLPST---GAFLAINATAVAGNDLCGGDSTSGLP 608
R+ SL ++ + N + S P +L N+ G+ C G SG P
Sbjct: 495 RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG---SGKP 542
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 168/412 (40%), Gaps = 55/412 (13%)
Query: 187 LASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP 246
L++N++ ++ + NL+ + L N ++ L SL HLDL YN L+
Sbjct: 33 LSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS 92
Query: 247 SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQN----- 301
F LS+L +L L N P LG SL S L + ++Q
Sbjct: 93 WFKPLSSLTFLNLLGN------PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 146
Query: 302 ---LEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDL-ST 357
LE L + +++ P SL S+ + L L Q + + +++ ++L T
Sbjct: 147 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 206
Query: 358 NFLTGKIPE-TLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEF 416
+ T E + ++ SL K F N KI T +SL +V N++SG L EF
Sbjct: 207 DLDTFHFSELSTGETNSLIKKFTFRNV---KI-----TDESLFQVMKLLNQISGLLELEF 258
Query: 417 TRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSE 476
L + +D I K E +++ L+ +P + L L
Sbjct: 259 DDCTLNGVGNFRASDNDRVIDPGKVETLTIRRLH---------IPRFYLFYDLSTL---- 305
Query: 477 NRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSS-CKKLVSLDLSNN-QLSGHIPAS 534
+ + ++ + +K+F +P LS K L LDLS N + ++ S
Sbjct: 306 ----------YSLTERVKRITVENSKVFL-VPCLLSQHLKSLEYLDLSENLMVEEYLKNS 354
Query: 535 LSE--MPVLGQLDLSENQLSG--KIPQTLGRVASLVQVNISHNHFHGSLPST 582
E P L L L +N L+ K +TL + +L ++IS N FH S+P T
Sbjct: 355 ACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFH-SMPET 405
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 13/156 (8%)
Query: 188 ASNQLIGSIPREIGQ------LRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLT 241
SNQ + IP I Q L N ++ L + ++P+ L ++ N +T
Sbjct: 18 CSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQ-------LRKINFSNNKIT 70
Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQN 301
+F S + + L N+L K GL+SL + L N ++ + I L +
Sbjct: 71 DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130
Query: 302 LEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFS 337
+ +L L+ N T P + ++ L L L +N F+
Sbjct: 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Query: 458 GKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKL 517
K+PD S +N+DLS N SF SEL L +SR ++ + L
Sbjct: 19 SKVPDDIPSST-KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 77
Query: 518 VSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHG 577
+L L+ N + P S S + L L E +L+ +G++ +L ++N++HN H
Sbjct: 78 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 137
Query: 578 -SLPS 581
LP+
Sbjct: 138 CKLPA 142
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 121/476 (25%), Positives = 197/476 (41%), Gaps = 50/476 (10%)
Query: 128 IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTL 187
+ S L+ LDLS + + L L L GN + P S S +TSL+
Sbjct: 47 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 106
Query: 188 ASNQLIGSIPREIGQLRNLKWIYLGYNNL-SGEIPKEIGDLTSLNHLDLVYNNLTGQIPP 246
+L IGQL LK + + +N + S ++P +LT+L H+DL YN +
Sbjct: 107 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ---TI 163
Query: 247 SFGNLSNLRY-------LFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQL 299
+ +L LR L + N + ++ G+K L L N+ S I + L
Sbjct: 164 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTC--L 220
Query: 300 QNLEILHL-------FSNNFTGKI--PSSLASMPKLQVLQL---WSNQFSGEIPS--NLG 345
QNL LH+ F + +I PS + + + + + ++N FS +I L
Sbjct: 221 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 280
Query: 346 KQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPN-SLSTCKSLRRVRLQ 404
+ +++ +S +L S S+ + L + P L KSL L
Sbjct: 281 NVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL------KQFPTLDLPFLKSL---TLT 331
Query: 405 NNRLSGELSSEFTRLPLVYFLDISGNDL--SGRIGEQKWEMTSLQMLNLAGNNFSGKLPD 462
N+ G +S + LP + +LD+S N L SG SL+ L+L+ N +
Sbjct: 332 MNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN 389
Query: 463 SFGSDQLENLDLSENRFSGTIPRS-FGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLD 521
G ++L++LD + S F L +L+ L IS D L +L
Sbjct: 390 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 449
Query: 522 LSNNQLSGHIPASL-SEMPVLGQLDLSENQL---SGKIPQTLGRVASLVQVNISHN 573
++ N + +++ + L LDLS+ QL S + TL R+ L N+SHN
Sbjct: 450 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL---NMSHN 502
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 54/131 (41%), Gaps = 8/131 (6%)
Query: 414 SEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNF-SGKLPDSFG-SDQLEN 471
S F L + +LDIS + +TSL L +AGN+F L + F + L
Sbjct: 413 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 472
Query: 472 LDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSG-- 529
LDLS+ + F L L L +S N L + L +LD S N++
Sbjct: 473 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 532
Query: 530 ----HIPASLS 536
H P SL+
Sbjct: 533 GILQHFPKSLA 543
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWE----RRRKVAIGIAKALRFLH 795
HPNI+RL GV K +V EY+E L LR + + + GIA +++L
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYL- 163
Query: 796 FHCSPSVVAGDVSPGKVIVDGK------DEPHLRL--SVPGLAYCTDSKSINSSAYVAPE 847
V D++ ++++ D R+ P AY T I + +PE
Sbjct: 164 --SDMGFVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI-PIRWTSPE 220
Query: 848 TKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ T D++ +G++L ++++ G+ P
Sbjct: 221 AIAYRKFTSASDVWSYGIVLWEVMSYGERP 250
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 72/149 (48%), Gaps = 21/149 (14%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFH 797
H N+V ++ ++V E++EG L++++ + ++ E+ V + + +AL +LH
Sbjct: 101 HDNVVDMYSSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLRALSYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIV--DGKDEPHLRLSVPGLAYCTD-SKSI-------NSSAYVAPE 847
+ V+ D+ +++ DG R+ + +C SK + + ++APE
Sbjct: 159 -NQGVIHRDIKSDSILLTSDG------RIKLSDFGFCAQVSKEVPKRKXLVGTPYWMAPE 211
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
+ DI+ G+++I+++ G+ P
Sbjct: 212 VISRLPYGTEVDIWSLGIMVIEMIDGEPP 240
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 60/264 (22%), Positives = 99/264 (37%), Gaps = 59/264 (22%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
V K + T++ SF + +Q K + H +V+L+ V SE+ Y+V EY+ L +
Sbjct: 36 VAIKTLKPGTMSPESFLEE-AQIMKKLKHDKLVQLYAVV-SEEPIYIVTEYMNKGSLLDF 93
Query: 772 LRNLSWERRR---------KVAIGIAKALRFLHFHC---SPSVVAG--------DVSPGK 811
L++ + +VA G+A R + H S +++ G D +
Sbjct: 94 LKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGNGLICKIADFGLAR 153
Query: 812 VIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLL 871
+I D + P + APE T K D++ FG++L +L+
Sbjct: 154 LIEDNEXTARQGAKFP-------------IKWTAPEAALYGRFTIKSDVWSFGILLTELV 200
Query: 872 T-GKSPADA--DFGVHESIVEWARY-CYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLAL 927
T G+ P + V E + R C DC + + L +
Sbjct: 201 TKGRVPYPGMNNREVLEQVERGYRMPCPQDCP--------------------ISLHELMI 240
Query: 928 HCTAGDPTARPCASDVTKTLESCF 951
HC DP RP + LE F
Sbjct: 241 HCWKKDPEERPTFEYLQSFLEDYF 264
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 73/174 (41%), Gaps = 10/174 (5%)
Query: 134 LEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITS----LQIFTLAS 189
LE L L+ N L +P I S + L+ L + + E+P +++ + + L S
Sbjct: 129 LETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 190 NQL----IGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIP 245
+L I S+P I L+NLK + + + LS P I L L LDL P
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYP 246
Query: 246 PSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQL 299
P FG + L+ L L ++P I L L DL +P + QL
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta
(I4122)
Length = 677
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 25/198 (12%)
Query: 700 YKVRSLANDM--QFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS-EKAA 756
Y +R + D Q +K+ + W Q K + HPN+V V +K A
Sbjct: 30 YVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLA 89
Query: 757 -----YLVYEYIEGKELSEVLRN------LSWERRRKVAIGIAKALRFLHFHCSPSVVAG 805
L EY EG +L + L L R + I+ ALR+LH + ++
Sbjct: 90 PNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHR 146
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTD-------SKSINSSAYVAPETKESKDITEKG 858
D+ P +++ + L + L Y + ++ + + Y+APE E K T
Sbjct: 147 DLKPENIVLQPGPQ-RLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTV 205
Query: 859 DIYGFGLILIDLLTGKSP 876
D + FG + + +TG P
Sbjct: 206 DYWSFGTLAFECITGFRP 223
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 17/150 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR--NLSWERRRKVAI--GIAKALRFLH 795
HPNI+RL GV K +V EY+E L LR + + + V + GIA +++L
Sbjct: 76 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYL- 134
Query: 796 FHCSPSVVAGDVSPGKVIVDG------KDEPHLRL--SVPGLAYCTDSKSINSSAYVAPE 847
V D++ ++++ D R+ P AY T I + +PE
Sbjct: 135 --SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI-PIRWTSPE 191
Query: 848 TKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ T D++ +G++L ++++ G+ P
Sbjct: 192 AIAYRKFTSASDVWSYGIVLWEVMSYGERP 221
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 66/146 (45%), Gaps = 5/146 (3%)
Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIF 185
VP G + E LDL + L+ + L L+L N L ++T L
Sbjct: 29 VPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88
Query: 186 TLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEIGD-LTSLNHLDLVYNNLTGQ 243
LA+NQL S+P + L L +YLG N L +P + D LT L L L N L
Sbjct: 89 GLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSI 146
Query: 244 IPPSFGNLSNLRYLFLYQNKLTGSIP 269
+F L+NL+ L L N+L S+P
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQ-SVP 171
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 63/155 (40%), Gaps = 4/155 (2%)
Query: 233 LDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEI 292
LDL L +F L+ L +L L N+L L L + L++N L+ +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SL 98
Query: 293 PEEVI-QLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLT 351
P V L L+ L+L N + KL+ L+L +NQ K NL
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 352 VIDLSTNFLTGKIPETLCDS-GSLFKLILFSNSLE 385
+ LSTN L +P D G L + LF N +
Sbjct: 159 TLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFD 192
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 1/162 (0%)
Query: 399 RRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSG 458
++ LQ+ L+ + F L + +L++ N L ++T L L LA N +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 459 KLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKL 517
F QL+ L L N+ F RL++L +L+++ N+L L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 518 VSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTL 559
+L LS NQL + + L + L NQ +TL
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETL 199
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 1/137 (0%)
Query: 443 MTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRN 501
+T L LNL N F +L L L+ N+ + F L++L +L + N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 502 KLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGR 561
+L KL L L+ NQL + ++ L L LS NQL R
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 562 VASLVQVNISHNHFHGS 578
+ L + + N F S
Sbjct: 178 LGKLQTITLFGNQFDCS 194
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWE----RRRKVAIGIAKALRFLH 795
HPNI+RL GV K +V EY+E L LR + + + GIA +++L
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYL- 163
Query: 796 FHCSPSVVAGDVSPGKVIVDGK------DEPHLRL--SVPGLAYCTDSKSINSSAYVAPE 847
V D++ ++++ D R+ P AY T I + +PE
Sbjct: 164 --SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI-PIRWTSPE 220
Query: 848 TKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ T D++ +G++L ++++ G+ P
Sbjct: 221 AIAYRKFTSASDVWSYGIVLWEVMSYGERP 250
>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|B Chain B, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|C Chain C, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|D Chain D, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|E Chain E, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|F Chain F, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|G Chain G, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|H Chain H, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
Length = 676
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 25/198 (12%)
Query: 700 YKVRSLANDM--QFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS-EKAA 756
Y +R + D Q +K+ + W Q K + HPN+V V +K A
Sbjct: 29 YVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLA 88
Query: 757 -----YLVYEYIEGKELSEVLRN------LSWERRRKVAIGIAKALRFLHFHCSPSVVAG 805
L EY EG +L + L L R + I+ ALR+LH + ++
Sbjct: 89 PNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHR 145
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTD-------SKSINSSAYVAPETKESKDITEKG 858
D+ P +++ + L + L Y + ++ + + Y+APE E K T
Sbjct: 146 DLKPENIVLQPGPQ-RLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTV 204
Query: 859 DIYGFGLILIDLLTGKSP 876
D + FG + + +TG P
Sbjct: 205 DYWSFGTLAFECITGFRP 222
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWE----RRRKVAIGIAKALRFLH 795
HPNI+RL GV K +V EY+E L LR + + + GIA +++L
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYL- 163
Query: 796 FHCSPSVVAGDVSPGKVIVDGK------DEPHLRL--SVPGLAYCTDSKSINSSAYVAPE 847
V D++ ++++ D R+ P AY T I + +PE
Sbjct: 164 --SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI-PIRWTSPE 220
Query: 848 TKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ T D++ +G++L ++++ G+ P
Sbjct: 221 AIAYRKFTSASDVWSYGIVLWEVMSYGERP 250
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWE----RRRKVAIGIAKALRFLH 795
HPNI+RL GV K +V EY+E L LR + + + GIA +++L
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYL- 163
Query: 796 FHCSPSVVAGDVSPGKVIVDGK------DEPHLRL--SVPGLAYCTDSKSINSSAYVAPE 847
V D++ ++++ D R+ P AY T I + +PE
Sbjct: 164 --SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI-PIRWTSPE 220
Query: 848 TKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ T D++ +G++L ++++ G+ P
Sbjct: 221 AIAYRKFTSASDVWSYGIVLWEVMSYGERP 250
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 66/146 (45%), Gaps = 5/146 (3%)
Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIF 185
VP G + E LDL + L+ + L L+L N L ++T L
Sbjct: 29 VPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88
Query: 186 TLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEIGD-LTSLNHLDLVYNNLTGQ 243
LA+NQL S+P + L L +YLG N L +P + D LT L L L N L
Sbjct: 89 GLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSI 146
Query: 244 IPPSFGNLSNLRYLFLYQNKLTGSIP 269
+F L+NL+ L L N+L S+P
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQ-SVP 171
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 63/155 (40%), Gaps = 4/155 (2%)
Query: 233 LDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEI 292
LDL L +F L+ L +L L N+L L L + L++N L+ +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SL 98
Query: 293 PEEVI-QLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLT 351
P V L L+ L+L N + KL+ L+L +NQ K NL
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 352 VIDLSTNFLTGKIPETLCDS-GSLFKLILFSNSLE 385
+ LSTN L +P D G L + LF N +
Sbjct: 159 TLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFD 192
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 1/137 (0%)
Query: 443 MTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRN 501
+T L LNL N F +L L L+ N+ + F L++L +L + N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 502 KLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGR 561
+L KL L L+ NQL + ++ L L LS NQL R
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 562 VASLVQVNISHNHFHGS 578
+ L + + N F S
Sbjct: 178 LGKLQTITLFGNQFDCS 194
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 1/154 (0%)
Query: 399 RRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSG 458
++ LQ+ L+ + F L + +L++ N L ++T L L LA N +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 459 KLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKL 517
F QL+ L L N+ F RL++L +L+++ N+L L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 518 VSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQL 551
+L LS NQL + + L + L NQ
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1)
Catalytic Domain
Length = 317
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 42/222 (18%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK------ 789
K + +P++V HG + Y+V E + L E+ + RR+ V A+
Sbjct: 97 KSLDNPHVVGFHGFFEDDDFVYVVLEICRRRSLLELHK-----RRKAVTEPEARYFMRQT 151
Query: 790 --ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----SKSI-NSS 841
+++LH + V+ D+ G + ++ D+ +++ GLA + K++ +
Sbjct: 152 IQGVQYLH---NNRVIHRDLKLGNLFLN--DDMDVKIGDFGLATKIEFDGERKKTLCGTP 206
Query: 842 AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLD 901
Y+APE K + + DI+ G IL LL GK P + + E+ + + YS
Sbjct: 207 NYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSC-LKETYIRIKKNEYS----- 260
Query: 902 TWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
+ H++ + + ++ M LH DPT RP +++
Sbjct: 261 ------VPRHINPVASALIRRM---LH---ADPTLRPSVAEL 290
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWE----RRRKVAIGIAKALRFLH 795
HPNI+RL GV K +V EY+E L LR + + + GIA +++L
Sbjct: 93 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYL- 151
Query: 796 FHCSPSVVAGDVSPGKVIVDG------KDEPHLRL--SVPGLAYCTDSKSINSSAYVAPE 847
V D++ ++++ D R+ P AY T I + +PE
Sbjct: 152 --SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI-PIRWTSPE 208
Query: 848 TKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ T D++ +G++L ++++ G+ P
Sbjct: 209 AIAYRKFTSASDVWSYGIVLWEVMSYGERP 238
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 86/214 (40%), Gaps = 37/214 (17%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
GK ++ + + + M VK + + + F + ++ ++ H +IVR GVC
Sbjct: 55 GKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQRE-AELLTMLQHQHIVRFFGVCT 113
Query: 752 SEKAAYLVYEYIEGKELSEVLRNLSWERR-----RKVAIGIAKALRFLHFHCSPSVVAGD 806
+ +V+EY+ +L+ LR+ + + VA G + L VA
Sbjct: 114 EGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLL-------AVASQ 166
Query: 807 VSPGKVIVDGKDEPHLRLSV------PGLA------------YCTDSKSINSSA-----Y 843
V+ G V + G H L+ GL Y TD + +
Sbjct: 167 VAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRW 226
Query: 844 VAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ PE+ + T + D++ FG++L ++ T GK P
Sbjct: 227 MPPESILYRKFTTESDVWSFGVVLWEIFTYGKQP 260
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 31/207 (14%)
Query: 131 LSRLEILDLSNNMLSGKIPEEIGSFSGL---KVLDLGGNVLVGEIPLSISNITSLQIFTL 187
L LE+L L N + E+G+F+GL L+L N L + ++ L+ L
Sbjct: 98 LHHLEVLQLGRNSIRQI---EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154
Query: 188 ASNQLIGSIPR------------EIGQLRNLKWIYLG---------YNNLSGEIPKEIGD 226
+N I SIP ++G+L+ L++I G Y NL K++ +
Sbjct: 155 RNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213
Query: 227 LT---SLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDL 283
LT L L++ N+ P SF LS+L+ L++ ++++ + GL SLV +L
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273
Query: 284 SDNYLSGEIPEEVIQLQNLEILHLFSN 310
+ N LS + L+ L LHL N
Sbjct: 274 AHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 82/210 (39%), Gaps = 51/210 (24%)
Query: 372 GSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGND 431
SL L LF N L + LR + L+NN + S F R+P + LD+
Sbjct: 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK 182
Query: 432 LSGRIGEQKWE-MTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRL 490
I E +E + +L+ LNL N +P+ LE L++S N F P SF
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSF--- 238
Query: 491 SELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQ 550
LSS KKL + N+Q+S + N
Sbjct: 239 ------------------HGLSSLKKLWVM---NSQVSL----------------IERNA 261
Query: 551 LSGKIPQTLGRVASLVQVNISHNHFHGSLP 580
G +ASLV++N++HN+ SLP
Sbjct: 262 FDG--------LASLVELNLAHNNL-SSLP 282
>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino(
Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6-
Difluoro-Phenyl)-Amide)
Length = 349
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 21/197 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQF---VVKKIIDVNTITTSSFWPDVSQFGKLIM--HPNIVRL 746
G+ S Y+ + + V+KK +D + T + G L+ HPNI++L
Sbjct: 62 GRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRT--------EIGVLLRLSHPNIIKL 113
Query: 747 HGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGD 806
+ + LV E + G EL + + + R A + + L + + +V D
Sbjct: 114 KEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGIVHRD 173
Query: 807 VSPGKVI--VDGKDEPHLRLSVPGLAYCTDSKSI-----NSSAYVAPETKESKDITEKGD 859
+ P ++ D P L+++ GL+ + + + + Y APE + D
Sbjct: 174 LKPENLLYATPAPDAP-LKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVD 232
Query: 860 IYGFGLILIDLLTGKSP 876
++ G+I LL G P
Sbjct: 233 MWSVGIITYILLCGFEP 249
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWE----RRRKVAIGIAKALRFLH 795
HPNI+RL GV K +V EY+E L LR + + + GIA +++L
Sbjct: 103 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYL- 161
Query: 796 FHCSPSVVAGDVSPGKVIVDGK------DEPHLRL--SVPGLAYCTDSKSINSSAYVAPE 847
V D++ ++++ D R+ P AY T I + +PE
Sbjct: 162 --SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI-PIRWTSPE 218
Query: 848 TKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ T D++ +G++L ++++ G+ P
Sbjct: 219 AIAYRKFTSASDVWSYGIVLWEVMSYGERP 248
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 31/157 (19%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWE----RRRKVAIGIAKALRFLH 795
H NI+RL GV K ++ EY+E L + LR E + + GIA +++L
Sbjct: 105 HHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYL- 163
Query: 796 FHCSPSVVAGDVSPGKVIVDG---------------KDEPHLRLSVPGLAYCTDSKSINS 840
+ + V D++ ++V+ +D+P Y T I
Sbjct: 164 --ANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPE-------ATYTTSGGKI-P 213
Query: 841 SAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ APE + T D++ FG+++ +++T G+ P
Sbjct: 214 IRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERP 250
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWE----RRRKVAIGIAKALRFLH 795
HPNI+RL GV K +V EY+E L LR + + + GIA +++L
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYL- 163
Query: 796 FHCSPSVVAGDVSPGKVIVDGK------DEPHLRL--SVPGLAYCTDSKSINSSAYVAPE 847
V D++ ++++ D R+ P AY T I + +PE
Sbjct: 164 --SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI-PIRWTSPE 220
Query: 848 TKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ T D++ +G++L ++++ G+ P
Sbjct: 221 AIAYRKFTSASDVWSYGIVLWEVMSYGERP 250
>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide
Substrate Complex: Kinase Substrate Recognition
Length = 277
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 19/161 (11%)
Query: 730 DVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIG 786
+V K+ HPNI++L + +LV++ ++ EL + L LS + RK+
Sbjct: 60 EVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRA 119
Query: 787 IAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----SKSINSS 841
+ + + LH ++V D+ P +++D D+ +++L+ G + D + +
Sbjct: 120 LLEVICALH---KLNIVHRDLKPENILLD--DDMNIKLTDFGFSCQLDPGEKLREVCGTP 174
Query: 842 AYVAPETKE-SKDITEKG-----DIYGFGLILIDLLTGKSP 876
+Y+APE E S + G D++ G+I+ LL G P
Sbjct: 175 SYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPP 215
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 87/191 (45%), Gaps = 19/191 (9%)
Query: 702 VRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL--IMHPNIVRLHGVCRSEKAAYLV 759
V+S + Q+V+K+I +++ +++ + L + HPNIV+ + Y+V
Sbjct: 43 VKSTEDGRQYVIKEI-NISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIV 101
Query: 760 YEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV-- 814
+Y EG +L + + + + ++ + + + L H H ++ D+ + +
Sbjct: 102 MDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH-DRKILHRDIKSQNIFLTK 160
Query: 815 DGKDEPHLRLSVPGLAYCTDS------KSINSSAYVAPETKESKDITEKGDIYGFGLILI 868
DG ++L G+A +S I + Y++PE E+K K DI+ G +L
Sbjct: 161 DGT----VQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLY 216
Query: 869 DLLTGKSPADA 879
+L T K +A
Sbjct: 217 ELCTLKHAFEA 227
>pdb|2PZY|A Chain A, Structure Of Mk2 Complexed With Compound 76
pdb|2PZY|B Chain B, Structure Of Mk2 Complexed With Compound 76
pdb|2PZY|C Chain C, Structure Of Mk2 Complexed With Compound 76
pdb|2PZY|D Chain D, Structure Of Mk2 Complexed With Compound 76
pdb|3KC3|A Chain A, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|B Chain B, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|C Chain C, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|D Chain D, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|E Chain E, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|F Chain F, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|G Chain G, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|H Chain H, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|I Chain I, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|J Chain J, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|K Chain K, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|L Chain L, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3A2C|A Chain A, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|B Chain B, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|C Chain C, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|D Chain D, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|E Chain E, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|F Chain F, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|G Chain G, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|H Chain H, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|I Chain I, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|J Chain J, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|K Chain K, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|L Chain L, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
Length = 324
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 20/159 (12%)
Query: 741 PNIVRLHGVCRS----EKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKAL 791
P+IVR+ V + K +V E ++G EL +++ + ++ I +A+
Sbjct: 75 PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAI 134
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINS-------SAYV 844
++LH S ++ DV P ++ K P+ L + + ++ S NS YV
Sbjct: 135 QYLH---SINIAHRDVKPENLLYTSK-RPNAILKLTDFGFAKETTSHNSLTTPCYTPYYV 190
Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV 883
APE + + D++ G+I+ LL G P ++ G+
Sbjct: 191 APEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL 229
>pdb|3FPM|A Chain A, Crystal Structure Of A Squarate Inhibitor Bound To Mapkap
Kinase-2
Length = 325
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 20/159 (12%)
Query: 741 PNIVRLHGVCRS----EKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKAL 791
P+IVR+ V + K +V E ++G EL +++ + ++ I +A+
Sbjct: 76 PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAI 135
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINS-------SAYV 844
++LH S ++ DV P ++ K P+ L + + ++ S NS YV
Sbjct: 136 QYLH---SINIAHRDVKPENLLYTSK-RPNAILKLTDFGFAKETTSHNSLTTPCYTPYYV 191
Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV 883
APE + + D++ G+I+ LL G P ++ G+
Sbjct: 192 APEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL 230
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 70/333 (21%), Positives = 128/333 (38%), Gaps = 78/333 (23%)
Query: 657 EDGIWEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKI 716
ED WE N +GK+L E +G+ G ++ V K+
Sbjct: 14 EDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTT-------------VAVKM 60
Query: 717 IDVNTITTSSFWPDVSQFG--KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN 774
+ N + S +S+F K + HP++++L+G C + L+ EY + L LR
Sbjct: 61 LKENA-SPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRE 119
Query: 775 -------------------LSWERRRKVAIG--------IAKALRFLHFHCSPSVVAGDV 807
L R + +G I++ +++L +V D+
Sbjct: 120 SRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYL---AEMKLVHRDL 176
Query: 808 SPGKVIV-DGKDEPHLRLSVPGLA---YCTDSKSINSSA-----YVAPETKESKDITEKG 858
+ ++V +G+ +++S GL+ Y DS S ++A E+ T +
Sbjct: 177 AARNILVAEGR---KMKISDFGLSRDVYEEDSXVKRSQGRIPVKWMAIESLFDHIYTTQS 233
Query: 859 DIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGH-VSSIQ 916
D++ FG++L +++T G +P Y + + GH +
Sbjct: 234 DVWSFGVLLWEIVTLGGNP------------------YPGIPPERLFNLLKTGHRMERPD 275
Query: 917 NEIVEIMNLALHCTAGDPTARPCASDVTKTLES 949
N E+ L L C +P RP +D++K LE
Sbjct: 276 NCSEEMYRLMLQCWKQEPDKRPVFADISKDLEK 308
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 38/177 (21%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 717 IDVNTITTSSFWPDV----SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
+ V ++ S PD + K + H +VRL+ V +++ Y++ EY+E L + L
Sbjct: 36 VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 94
Query: 773 RN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
+ L+ + +A IA+ + F+ + + ++ ++V D +++
Sbjct: 95 KTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRNLRAANILV--SDTLSCKIADF 149
Query: 828 GLAYCTDSKSINSS-------AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
GLA + + + APE T K D++ FG++L +++T G+ P
Sbjct: 150 GLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIP 206
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 120/496 (24%), Positives = 195/496 (39%), Gaps = 79/496 (15%)
Query: 137 LDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSI 196
LDLS N L SF L+VLDL + + +++ L L N +
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116
Query: 197 PREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG-QIPPSFGNLSNLR 255
L +L+ + NL+ IG L +L L++ +N + ++P F NL+NL
Sbjct: 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176
Query: 256 YLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHL----FSNN 311
+L L NK+ + L + L+ + P IQ + + L NN
Sbjct: 177 HLDLSSNKIQSIYCTDLRVLHQMPL--LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 234
Query: 312 FT--GKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLC 369
F + + + + L+V +L +F E NL D S E LC
Sbjct: 235 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNE--------GNLEKFDKSA-------LEGLC 279
Query: 370 D-SGSLFKLILFSNSLEGKIP--NSLSTCKSLRRVRLQNNRLSG----------EL-SSE 415
+ + F+L L+G I N L+ S V + R+ EL + +
Sbjct: 280 NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 339
Query: 416 FTRLPLVYFLDISGNDLSGRIGEQKW---EMTSLQMLNLAGNNFSGK---LPDSFGSDQL 469
F + P + + + G + ++ SL+ L+L+ N S K FG+ L
Sbjct: 340 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISL 399
Query: 470 ENLDLSENRFSGTIPRS--FGRLSELMQLKISRNKLFGDIPEELS---SCKKLVSLDLSN 524
+ LDLS F+G I S F L +L L + L E S S + L+ LD+S+
Sbjct: 400 KYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNL--KQMSEFSVFLSLRNLIYLDISH 454
Query: 525 N-------------------QLSGH------IPASLSEMPVLGQLDLSENQLSGKIPQTL 559
+++G+ +P +E+ L LDLS+ QL P
Sbjct: 455 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 514
Query: 560 GRVASLVQVNISHNHF 575
++SL +N+SHN+F
Sbjct: 515 NSLSSLQVLNMSHNNF 530
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 4/164 (2%)
Query: 206 LKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS-FGNLSNLRYLFLYQNKL 264
LK++ L +N + +G L L HLD ++NL S F +L NL YL +
Sbjct: 399 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 457
Query: 265 TGSIPKSILGLKSLVSFDLSDN-YLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASM 323
+ GL SL ++ N + +P+ +L+NL L L P++ S+
Sbjct: 458 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 517
Query: 324 PKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTN-FLTGKIPE 366
LQVL + N F N+L V+D S N +T K E
Sbjct: 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 459 KLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLV 518
K+PD+ +NLDLS N SF EL L +SR ++ S L
Sbjct: 45 KIPDNLPFST-KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 103
Query: 519 SLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHN 573
+L L+ N + + S + L +L E L+ +G + +L ++N++HN
Sbjct: 104 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 158
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 85/203 (41%), Gaps = 29/203 (14%)
Query: 131 LSRLEILDLSNNMLSGK---IPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTL 187
L LE LDLS N LS K + G+ S LK LDL N ++ T+
Sbjct: 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTIS-LKYLDLSFNGVI----------------TM 412
Query: 188 ASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS 247
+SN L + QL +L + + +S E + L +L +LD+ + +
Sbjct: 413 SSNFL------GLEQLEHLDFQHSNLKQMS-EFSVFLS-LRNLIYLDISHTHTRVAFNGI 464
Query: 248 FGNLSNLRYLFLYQNKLTGS-IPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILH 306
F LS+L L + N + +P L++L DLS L P L +L++L+
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524
Query: 307 LFSNNFTGKIPSSLASMPKLQVL 329
+ NNF + LQVL
Sbjct: 525 MSHNNFFSLDTFPYKCLNSLQVL 547
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 10/167 (5%)
Query: 127 PIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFT 186
PI +L+ L L L+ N + P + S + L N + P ++N T L
Sbjct: 172 PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANXTRLNSLK 227
Query: 187 LASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP 246
+ +N++ P + L L W+ +G N +S + DLT L L++ N ++
Sbjct: 228 IGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQISD--IS 281
Query: 247 SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIP 293
NLS L LFL N+L + I GL +L + LS N+++ P
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 15/206 (7%)
Query: 161 LDLGGNVLVGEI-PLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGE 219
L+LG N + ++ PLS N T L T+ +++ P I L +L + L YN +
Sbjct: 137 LNLGANHNLSDLSPLS--NXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192
Query: 220 IPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLV 279
P + LTSL++ N +T P N + L L + NK+T P + L L
Sbjct: 193 SP--LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDLSP--LANLSQLT 246
Query: 280 SFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGE 339
++ N +S V L L+ L++ SN + S L ++ +L L L +NQ E
Sbjct: 247 WLEIGTNQISD--INAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE 302
Query: 340 IPSNLGKQNNLTVIDLSTNFLTGKIP 365
+G NLT + LS N +T P
Sbjct: 303 DXEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 127 PIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFT 186
P+ SL+ L N ++ P + + + L L +G N + PL+ N++ L
Sbjct: 194 PLASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDLSPLA--NLSQLTWLE 249
Query: 187 LASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP 246
+ +NQ+ S + L LK + +G N +S + +L+ LN L L N L +
Sbjct: 250 IGTNQI--SDINAVKDLTKLKXLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDXE 305
Query: 247 SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSD 285
G L+NL LFL QN +T P L SL D +D
Sbjct: 306 VIGGLTNLTTLFLSQNHITDIRP-----LASLSKXDSAD 339
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 468 QLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQL 527
+L +L + N+ + P LS+L L+I N++ DI + KL L++ +NQ+
Sbjct: 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI-SDI-NAVKDLTKLKXLNVGSNQI 277
Query: 528 SGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLP 580
S + L+ + L L L+ NQL + + +G + +L + +S NH P
Sbjct: 278 SD--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|2JBO|A Chain A, Protein Kinase Mk2 In Complex With An Inhibitor (Crystal
Form-1, Soaking)
pdb|2JBP|A Chain A, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|B Chain B, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|C Chain C, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|D Chain D, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|E Chain E, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|F Chain F, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|G Chain G, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|H Chain H, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|I Chain I, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|J Chain J, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|K Chain K, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|L Chain L, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
Length = 326
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 20/159 (12%)
Query: 741 PNIVRLHGVCRS----EKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKAL 791
P+IVR+ V + K +V E ++G EL +++ + ++ I +A+
Sbjct: 77 PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAI 136
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINS-------SAYV 844
++LH S ++ DV P ++ K P+ L + + ++ S NS YV
Sbjct: 137 QYLH---SINIAHRDVKPENLLYTSK-RPNAILKLTDFGFAKETTSHNSLTTPCYTPYYV 192
Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV 883
APE + + D++ G+I+ LL G P ++ G+
Sbjct: 193 APEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL 231
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 68/333 (20%), Positives = 127/333 (38%), Gaps = 78/333 (23%)
Query: 657 EDGIWEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKI 716
ED WE N +GK+L E +G+ G ++ V K+
Sbjct: 14 EDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTT-------------VAVKM 60
Query: 717 IDVNTITTSSFWPDVSQFG--KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN 774
+ N + S +S+F K + HP++++L+G C + L+ EY + L LR
Sbjct: 61 LKENA-SPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRE 119
Query: 775 -------------------LSWERRRKVAIG--------IAKALRFLHFHCSPSVVAGDV 807
L R + +G I++ +++L +V D+
Sbjct: 120 SRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYL---AEMKLVHRDL 176
Query: 808 SPGKVIV-DGKDEPHLRLSVPGL--------AYCTDSKSINSSAYVAPETKESKDITEKG 858
+ ++V +G+ +++S GL +Y S+ ++A E+ T +
Sbjct: 177 AARNILVAEGR---KMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQS 233
Query: 859 DIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGH-VSSIQ 916
D++ FG++L +++T G +P Y + + GH +
Sbjct: 234 DVWSFGVLLWEIVTLGGNP------------------YPGIPPERLFNLLKTGHRMERPD 275
Query: 917 NEIVEIMNLALHCTAGDPTARPCASDVTKTLES 949
N E+ L L C +P RP +D++K LE
Sbjct: 276 NCSEEMYRLMLQCWKQEPDKRPVFADISKDLEK 308
>pdb|3GOK|A Chain A, Binding Site Mapping Of Protein Ligands
pdb|3GOK|B Chain B, Binding Site Mapping Of Protein Ligands
pdb|3GOK|C Chain C, Binding Site Mapping Of Protein Ligands
pdb|3GOK|D Chain D, Binding Site Mapping Of Protein Ligands
pdb|3GOK|E Chain E, Binding Site Mapping Of Protein Ligands
pdb|3GOK|F Chain F, Binding Site Mapping Of Protein Ligands
pdb|3GOK|G Chain G, Binding Site Mapping Of Protein Ligands
pdb|3GOK|H Chain H, Binding Site Mapping Of Protein Ligands
pdb|3GOK|I Chain I, Binding Site Mapping Of Protein Ligands
pdb|3GOK|J Chain J, Binding Site Mapping Of Protein Ligands
pdb|3GOK|K Chain K, Binding Site Mapping Of Protein Ligands
pdb|3GOK|L Chain L, Binding Site Mapping Of Protein Ligands
Length = 334
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 20/159 (12%)
Query: 741 PNIVRLHGVCRS----EKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKAL 791
P+IVR+ V + K +V E ++G EL +++ + ++ I +A+
Sbjct: 85 PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAI 144
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINS-------SAYV 844
++LH S ++ DV P ++ K P+ L + + ++ S NS YV
Sbjct: 145 QYLH---SINIAHRDVKPENLLYTSK-RPNAILKLTDFGFAKETTSHNSLTTPCYTPYYV 200
Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV 883
APE + + D++ G+I+ LL G P ++ G+
Sbjct: 201 APEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL 239
>pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Apo)
Length = 271
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 63/260 (24%), Positives = 106/260 (40%), Gaps = 31/260 (11%)
Query: 700 YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAY-- 757
+K R ND+ V K+ D +T + F + + ++ HPN++ + G C+S A +
Sbjct: 27 WKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRL-RIFSHPNVLPVLGACQSPPAPHPT 85
Query: 758 LVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKV 812
L+ + L VL + + K A+ A+ FLH P + ++ V
Sbjct: 86 LITHWXPYGSLYNVLHEGTNFVVDQSQAVKFALDXARGXAFLH-TLEPLIPRHALNSRSV 144
Query: 813 IVDGKDEPHLRLSVPGLAYCTDSKS-INSSAYVAPET--KESKDITEK-GDIYGFGLILI 868
+D ++ R+S + + S + A+VAPE K+ +D + D + F ++L
Sbjct: 145 XID--EDXTARISXADVKFSFQSPGRXYAPAWVAPEALQKKPEDTNRRSADXWSFAVLLW 202
Query: 869 DLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALH 928
+L+T + P AD E + A L + P I HVS L
Sbjct: 203 ELVTREVPF-ADLSNXEIGXKVALE-----GLRPTIPPGISPHVS----------KLXKI 246
Query: 929 CTAGDPTARPCASDVTKTLE 948
C DP RP + LE
Sbjct: 247 CXNEDPAKRPKFDXIVPILE 266
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 720 NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAA-YLVYEYIEGKELSEVLRN---- 774
N T +F + S +L H N+V+L GV EK Y+V EY+ L + LR+
Sbjct: 226 NDATAQAFLAEASVMTQL-RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRS 284
Query: 775 -LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL---A 830
L + K ++ + +A+ +L + V D++ V+V ++ ++S GL A
Sbjct: 285 VLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVS--EDNVAKVSDFGLTKEA 339
Query: 831 YCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
T + APE K + K D++ FG++L ++ + G+ P
Sbjct: 340 SSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVP 386
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Query: 209 IYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSI 268
I L N + P L +DL N ++ P +F L +L L LY NK+T +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95
Query: 269 PKSIL-GLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQ 327
PKS+ GL SL L+ N ++ + L NL +L L+ N + + + +Q
Sbjct: 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155
Query: 328 VLQLWSNQF 336
+ L N F
Sbjct: 156 TMHLAQNPF 164
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 493 LMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLS 552
+ ++++ +N + P S KKL +DLSNNQ+S P + + L L L N+++
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 553 GKIPQTL 559
++P++L
Sbjct: 94 -ELPKSL 99
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 60/153 (39%), Gaps = 31/153 (20%)
Query: 160 VLDLGGNVLVGEIPLSI-SNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSG 218
++D G L EIP ++ IT ++ L N + P + L+ I L N +S
Sbjct: 15 IVDCRGKGLT-EIPTNLPETITEIR---LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE 70
Query: 219 EIPKEIGDLTSLNHLDLVYNNLTGQIPPS-------------------------FGNLSN 253
P L SLN L ++Y N ++P S F +L N
Sbjct: 71 LAPDAFQGLRSLNSL-VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129
Query: 254 LRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDN 286
L L LY NKL + L+++ + L+ N
Sbjct: 130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1
(Plk1) Catalytic Domain In Complex With Adp
Length = 317
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 42/222 (18%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK------ 789
K + +P++V HG + Y+V E + L E+ + RR+ V A+
Sbjct: 97 KSLDNPHVVGFHGFFEDDDFVYVVLEICRRRSLLELHK-----RRKAVTEPEARYFMRQT 151
Query: 790 --ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SKSINSS 841
+++LH + V+ D+ G + ++ D+ +++ GLA + +
Sbjct: 152 IQGVQYLH---NNRVIHRDLKLGNLFLN--DDMDVKIGDFGLATKIEFDGERKKXLCGTP 206
Query: 842 AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLD 901
Y+APE K + + DI+ G IL LL GK P + + E+ + + YS
Sbjct: 207 NYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSC-LKETYIRIKKNEYS----- 260
Query: 902 TWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
+ H++ + + ++ M LH DPT RP +++
Sbjct: 261 ------VPRHINPVASALIRRM---LH---ADPTLRPSVAEL 290
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Query: 209 IYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSI 268
I L N + P L +DL N ++ P +F L +L L LY NK+T +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95
Query: 269 PKSIL-GLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQ 327
PKS+ GL SL L+ N ++ + L NL +L L+ N + + + +Q
Sbjct: 96 PKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155
Query: 328 VLQLWSNQF 336
+ L N F
Sbjct: 156 TMHLAQNPF 164
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 493 LMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLS 552
+ ++++ +N + P S KKL +DLSNNQ+S P + + L L L N+++
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 553 GKIPQTL 559
++P++L
Sbjct: 94 -ELPKSL 99
>pdb|3R2Y|A Chain A, Mk2 Kinase Bound To Compound 1
pdb|3R30|A Chain A, Mk2 Kinase Bound To Compound 2
Length = 319
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 20/159 (12%)
Query: 741 PNIVRLHGVCRS----EKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKAL 791
P+IVR+ V + K +V E ++G EL +++ + ++ I +A+
Sbjct: 70 PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAI 129
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINS-------SAYV 844
++LH S ++ DV P ++ K P+ L + + ++ S NS YV
Sbjct: 130 QYLH---SINIAHRDVKPENLLYTSK-RPNAILKLTDFGFAKETTSHNSLTTPCYTPYYV 185
Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV 883
APE + + D++ G+I+ LL G P ++ G+
Sbjct: 186 APEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL 224
>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain.
pdb|3DB8|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 041
pdb|3DBC|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 257
pdb|3DBD|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 094
Length = 317
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 42/222 (18%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK------ 789
K + +P++V HG + Y+V E + L E+ + RR+ V A+
Sbjct: 97 KSLDNPHVVGFHGFFEDDDFVYVVLEICRRRSLLELHK-----RRKAVTEPEARYFMRQT 151
Query: 790 --ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----SKSI-NSS 841
+++LH + V+ D+ G + ++ D+ +++ GLA + K + +
Sbjct: 152 IQGVQYLH---NNRVIHRDLKLGNLFLN--DDMDVKIGDFGLATKIEFDGERKKDLCGTP 206
Query: 842 AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLD 901
Y+APE K + + DI+ G IL LL GK P + + E+ + + YS
Sbjct: 207 NYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSC-LKETYIRIKKNEYS----- 260
Query: 902 TWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
+ H++ + + ++ M LH DPT RP +++
Sbjct: 261 ------VPRHINPVASALIRRM---LH---ADPTLRPSVAEL 290
>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 902
pdb|3D5X|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Wortmannin.
pdb|3DBE|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 557
pdb|3DBF|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 562
Length = 301
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 42/222 (18%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK------ 789
K + +P++V HG + Y+V E + L E+ + RR+ V A+
Sbjct: 81 KSLDNPHVVGFHGFFEDDDFVYVVLEICRRRSLLELHK-----RRKAVTEPEARYFMRQT 135
Query: 790 --ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----SKSI-NSS 841
+++LH + V+ D+ G + ++ D+ +++ GLA + K + +
Sbjct: 136 IQGVQYLH---NNRVIHRDLKLGNLFLN--DDMDVKIGDFGLATKIEFDGERKKDLCGTP 190
Query: 842 AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLD 901
Y+APE K + + DI+ G IL LL GK P + + E+ + + YS
Sbjct: 191 NYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSC-LKETYIRIKKNEYS----- 244
Query: 902 TWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
+ H++ + + ++ M LH DPT RP +++
Sbjct: 245 ------VPRHINPVASALIRRM---LH---ADPTLRPSVAEL 274
>pdb|3R2B|A Chain A, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|B Chain B, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|C Chain C, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|D Chain D, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|E Chain E, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|F Chain F, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|G Chain G, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|H Chain H, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|I Chain I, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|J Chain J, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|K Chain K, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|L Chain L, Mk2 Kinase Bound To Compound 5b
Length = 318
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 20/159 (12%)
Query: 741 PNIVRLHGVCRS----EKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKAL 791
P+IVR+ V + K +V E ++G EL +++ + ++ I +A+
Sbjct: 69 PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAI 128
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINS-------SAYV 844
++LH S ++ DV P ++ K P+ L + + ++ S NS YV
Sbjct: 129 QYLH---SINIAHRDVKPENLLYTSK-RPNAILKLTDFGFAKETTSHNSLTTPCYTPYYV 184
Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV 883
APE + + D++ G+I+ LL G P ++ G+
Sbjct: 185 APEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL 223
>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 7 Activated Mutant (S287d, T291d)
Length = 318
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 89/191 (46%), Gaps = 34/191 (17%)
Query: 716 IIDVNTITTSSFWPDVSQ-FGKLIMHPNI---VRLHGVCRSEKAAYLVYEYIEGKELSEV 771
++D++ + S P + Q FG I + ++ + L G C A + + ++G +
Sbjct: 71 LMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELMGTC-----AEKLKKRMQGPIPERI 125
Query: 772 LRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA- 830
L K+ + I KAL +L V+ DV P +++D + + ++L G++
Sbjct: 126 LG--------KMTVAIVKALYYLKE--KHGVIHRDVKPSNILLDERGQ--IKLCDFGISG 173
Query: 831 YCTDSKSINSSA----YVAPETKESKDITE-----KGDIYGFGLILIDLLTGKSP---AD 878
D K+ + SA Y+APE + D T+ + D++ G+ L++L TG+ P
Sbjct: 174 RLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCK 233
Query: 879 ADFGVHESIVE 889
DF V +++
Sbjct: 234 TDFEVLTKVLQ 244
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 108/260 (41%), Gaps = 7/260 (2%)
Query: 87 VESINLSSNQLSGEIPSDIXXXXXXXXXXXXXXXXXTGPVPIGSLSRLEILDLSNNMLSG 146
VESINL ++ S S P I ++ L+ L L+ N
Sbjct: 255 VESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQ 314
Query: 147 KIPEEIGSFSGLKVLDLGGNVLVGEI-PLSISNITSLQIFTLASNQLIGS--IPREIGQL 203
SF L+ L + GN+ ++ + + +LQ L+ + + S ++ L
Sbjct: 315 LCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNL 374
Query: 204 RNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS-FGNLSNLRYLFLYQN 262
R+L+++ L YN G + + L LD+ + +L + P S F NL LR L L
Sbjct: 375 RHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHC 434
Query: 263 KLTGSIPKSILGLKSLVSFDLSDN-YLSGEIPE-EVIQL-QNLEILHLFSNNFTGKIPSS 319
L S + GL+ L +L N + G I + ++Q+ +LEIL L S N +
Sbjct: 435 LLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQA 494
Query: 320 LASMPKLQVLQLWSNQFSGE 339
+ + L L N +G+
Sbjct: 495 FHGLRNVNHLDLSHNSLTGD 514
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 99/390 (25%), Positives = 159/390 (40%), Gaps = 55/390 (14%)
Query: 227 LTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDN 286
L +L LDL + +F + L + L N L S+ G K L L+
Sbjct: 55 LINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQT 114
Query: 287 YLSGEIPEEVIQLQNLEILHLFSNNFTG-KIPSSLASMPKLQVLQLWSNQ---FSGEIPS 342
+S V L+NLE LHL SN+ + +P + + L+VL +N S + +
Sbjct: 115 GISNLEFIPVHNLENLESLHLGSNHISSINLPENFPTQ-NLKVLDFQNNAIHYISRKDTN 173
Query: 343 NLGKQNNLTVIDLSTNFLTG--------KIPETLCDSGSLFKLILFS------------N 382
+L + NL+ ++ + N + G KI ++L GSL I+F
Sbjct: 174 SLEQATNLS-LNFNGNDIKGIEPGAFISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLG 232
Query: 383 SLEGKIPNSLSTCK-------SLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGR 435
+ E L++ S+ + LQ +R S SS F V LD++ L+G
Sbjct: 233 TFEDTDDQYLTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG- 291
Query: 436 IGEQKWEMTSLQMLNLAGNNFSG----------KLPDSFGSDQLENLDLSENRFSGTIPR 485
+ M SL+ L L N+F L D + + LDL GT R
Sbjct: 292 LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDL------GT--R 343
Query: 486 SFGRLSELMQLKISRNKLFGD--IPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQ 543
+L L +L +S + + +L + + L L+LS N+ G + E P L
Sbjct: 344 CLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLEL 403
Query: 544 LDLSENQLSGKIPQTLGRVASLVQV-NISH 572
LD++ L K P + + L++V N+SH
Sbjct: 404 LDVAFTHLHVKAPHSPFQNLHLLRVLNLSH 433
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 30/136 (22%)
Query: 127 PIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLV-GEIPLS--ISNITSLQ 183
P +L L +L+LS+ +L + L+ L+L GN G I + + + SL+
Sbjct: 419 PFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLE 478
Query: 184 IFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQ 243
I L+S L+ + LRN+ NHLDL +N+LTG
Sbjct: 479 ILILSSCNLLSIDQQAFHGLRNV------------------------NHLDLSHNSLTGD 514
Query: 244 IPPSFGNLSNLRYLFL 259
S LS+L+ L+L
Sbjct: 515 ---SMDALSHLKGLYL 527
>pdb|2P3G|X Chain X, Crystal Structure Of A Pyrrolopyridine Inhibitor Bound To
Mapkap Kinase-2
pdb|3FYJ|X Chain X, Crystal Structure Of An Optimzied Benzothiophene Inhibitor
Bound To Mapkap Kinase-2 (Mk-2)
pdb|3FYK|X Chain X, Crystal Structure Of A Benzthiophene Lead Bound To Mapkap
Kinase-2 (Mk-2)
Length = 327
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 20/159 (12%)
Query: 741 PNIVRLHGVCRS----EKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKAL 791
P+IVR+ V + K +V E ++G EL +++ + ++ I +A+
Sbjct: 71 PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAI 130
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINS-------SAYV 844
++LH S ++ DV P ++ K P+ L + + ++ S NS YV
Sbjct: 131 QYLH---SINIAHRDVKPENLLYTSK-RPNAILKLTDFGFAKETTSHNSLTTPCYTPYYV 186
Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV 883
APE + + D++ G+I+ LL G P ++ G+
Sbjct: 187 APEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL 225
>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156.
pdb|2X4F|B Chain B, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156
Length = 373
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 12/146 (8%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAI----GIAKALRFLH 795
H N+++L+ S+ LV EY++G EL + + + S+ I I + +R +H
Sbjct: 145 HANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEGIRHMH 204
Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA--YCTDSK---SINSSAYVAPETKE 850
++ D+ P ++ +D +++ GLA Y K + + ++APE
Sbjct: 205 ---QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVN 261
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
++ D++ G+I LL+G SP
Sbjct: 262 YDFVSFPTDMWSVGVIAYMLLSGLSP 287
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 73/154 (47%), Gaps = 23/154 (14%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRR-------KVAIGIAKALR 792
H +V+L+GVC ++ +++ EY+ L LR + R R ++ + +A+
Sbjct: 78 HEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREM---RHRFQTQQLLEMCKDVCEAME 134
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA------YVA 845
+L S + D++ +V+ D+ +++S GL+ Y D + +S +
Sbjct: 135 YLE---SKQFLHRDLAARNCLVN--DQGVVKVSDFGLSRYVLDDEETSSVGSKFPVRWSP 189
Query: 846 PETKESKDITEKGDIYGFGLILIDLLT-GKSPAD 878
PE + K DI+ FG+++ ++ + GK P +
Sbjct: 190 PEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYE 223
>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase,
Kinase: An Active Protein Kinase Complexed With
Nucleotide, Substrate-Analogue And Product
Length = 298
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 19/161 (11%)
Query: 730 DVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIG 786
+V K+ HPNI++L + +LV++ ++ EL + L LS + RK+
Sbjct: 73 EVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRA 132
Query: 787 IAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----SKSINSS 841
+ + + LH ++V D+ P +++D D+ +++L+ G + D + +
Sbjct: 133 LLEVICALH---KLNIVHRDLKPENILLD--DDMNIKLTDFGFSCQLDPGEKLREVCGTP 187
Query: 842 AYVAPETKE-SKDITEKG-----DIYGFGLILIDLLTGKSP 876
+Y+APE E S + G D++ G+I+ LL G P
Sbjct: 188 SYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPP 228
>pdb|3KA0|A Chain A, Mk2 Complex With Inhibitor
6-(5-(2-Aminopyrimidin-4-Ylamino)-2-
Hydroxyphenyl)-N-Methylbenzo[b]thiophene-2-Carboxamide
Length = 320
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 20/159 (12%)
Query: 741 PNIVRLHGVCRS----EKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKAL 791
P+IVR+ V + K +V E ++G EL +++ + ++ I +A+
Sbjct: 69 PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAI 128
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINS-------SAYV 844
++LH S ++ DV P ++ K P+ L + + ++ S NS YV
Sbjct: 129 QYLH---SINIAHRDVKPENLLYTSK-RPNAILKLTDFGFAKETTSHNSLTEPCYTPYYV 184
Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV 883
APE + + D++ G+I+ LL G P ++ G+
Sbjct: 185 APEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL 223
>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By
Mutational Studies
Length = 298
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 79/161 (49%), Gaps = 19/161 (11%)
Query: 730 DVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIG 786
+V K+ HPNI++L + +LV++ ++ EL + L LS + RK+
Sbjct: 73 EVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRA 132
Query: 787 IAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS----KSI-NSS 841
+ + + LH ++V D+ P +++D D+ +++L+ G + D +S+ +
Sbjct: 133 LLEVICALH---KLNIVHRDLKPENILLD--DDMNIKLTDFGFSCQLDPGEKLRSVCGTP 187
Query: 842 AYVAPETKE-SKDITEKG-----DIYGFGLILIDLLTGKSP 876
+Y+APE E S + G D++ G+I+ LL G P
Sbjct: 188 SYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPP 228
>pdb|2ONL|C Chain C, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|D Chain D, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
Length = 406
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 20/159 (12%)
Query: 741 PNIVRLHGVCRS----EKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKAL 791
P+IVR+ V + K +V E ++G EL +++ + ++ I +A+
Sbjct: 121 PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAI 180
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINS-------SAYV 844
++LH S ++ DV P ++ K P+ L + + ++ S NS YV
Sbjct: 181 QYLH---SINIAHRDVKPENLLYTSK-RPNAILKLTDFGFAKETTSHNSLTTPCYTPYYV 236
Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV 883
APE + + D++ G+I+ LL G P ++ G+
Sbjct: 237 APEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL 275
>pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2
pdb|1KWP|B Chain B, Crystal Structure Of Mapkap2
pdb|1NY3|A Chain A, Crystal Structure Of Adp Bound To Map Kap Kinase 2
Length = 400
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 20/159 (12%)
Query: 741 PNIVRLHGVCRS----EKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKAL 791
P+IVR+ V + K +V E ++G EL +++ + ++ I +A+
Sbjct: 115 PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAI 174
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINS-------SAYV 844
++LH S ++ DV P ++ K P+ L + + ++ S NS YV
Sbjct: 175 QYLH---SINIAHRDVKPENLLYTSK-RPNAILKLTDFGFAKETTSHNSLTTPCYTPYYV 230
Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV 883
APE + + D++ G+I+ LL G P ++ G+
Sbjct: 231 APEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL 269
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 21/196 (10%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 20 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 79
Query: 759 VYEYIEGKEL-----SEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
V+E++ ++L + L + + + + L F H H V+ D+ P ++
Sbjct: 80 VFEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLL 135
Query: 814 VDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLI 866
++ E ++L+ GLA T + + + Y APE K + DI+ G I
Sbjct: 136 IN--TEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGXKYYSTAVDIWSLGCI 193
Query: 867 LIDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 194 FAEMVTRRALFPGDSE 209
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 101/256 (39%), Gaps = 33/256 (12%)
Query: 707 NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
N V K + T++ +F + +Q K + H +V+L+ V SE+ Y+V EY+
Sbjct: 206 NGTTRVAIKTLKPGTMSPEAFLQE-AQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKG 263
Query: 767 ELSEVLRNLSWERRR---------KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK 817
L + L+ + + R ++A G+A R + H + A ++ G+ +V
Sbjct: 264 SLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVH--RDLRAANILVGENLVCKV 321
Query: 818 DEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ L + Y + + APE T K D++ FG++L +L T G+ P
Sbjct: 322 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 381
Query: 877 ADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVE-IMNLALHCTAGDPT 935
V+ + +D RG+ E E + +L C +P
Sbjct: 382 YPG--MVNREV----------------LDQVERGYRMPCPPECPESLHDLMCQCWRKEPE 423
Query: 936 ARPCASDVTKTLESCF 951
RP + LE F
Sbjct: 424 ERPTFEYLQAFLEDYF 439
>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
pdb|1KOB|B Chain B, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
Length = 387
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 66/148 (44%), Gaps = 12/148 (8%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK----ALRF 793
+ HP ++ LH + L+ E++ G EL + + ++ I + L+
Sbjct: 105 LHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKH 164
Query: 794 LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSI-----NSSAYVAPET 848
+H H S+V D+ P ++ + K +++ GLA + I ++ + APE
Sbjct: 165 MHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEI 221
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP 876
+ + + D++ G++ LL+G SP
Sbjct: 222 VDREPVGFYTDMWAIGVLGYVLLSGLSP 249
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 21/196 (10%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 24 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 83
Query: 759 VYEYIEGKEL-----SEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
V+E++ ++L + L + + + + L F H H V+ D+ P ++
Sbjct: 84 VFEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLL 139
Query: 814 VDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLI 866
++ E ++L+ GLA T + + + Y APE K + DI+ G I
Sbjct: 140 IN--TEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCI 197
Query: 867 LIDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 198 FAEMVTRRALFPGDSE 213
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 101/256 (39%), Gaps = 33/256 (12%)
Query: 707 NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
N V K + T++ +F + +Q K + H +V+L+ V SE+ Y+V EY+
Sbjct: 206 NGTTRVAIKTLKPGTMSPEAFLQE-AQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKG 263
Query: 767 ELSEVLRNLSWERRR---------KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK 817
L + L+ + + R ++A G+A R + H + A ++ G+ +V
Sbjct: 264 SLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVH--RDLRAANILVGENLVCKV 321
Query: 818 DEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ L + Y + + APE T K D++ FG++L +L T G+ P
Sbjct: 322 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 381
Query: 877 ADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVE-IMNLALHCTAGDPT 935
V+ + +D RG+ E E + +L C +P
Sbjct: 382 YPG--MVNREV----------------LDQVERGYRMPCPPECPESLHDLMCQCWRKEPE 423
Query: 936 ARPCASDVTKTLESCF 951
RP + LE F
Sbjct: 424 ERPTFEYLQAFLEDYF 439
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 21/196 (10%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 19 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 78
Query: 759 VYEYIEGKEL-----SEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
V+E++ ++L + L + + + + L F H H V+ D+ P ++
Sbjct: 79 VFEHVH-QDLKTFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLL 134
Query: 814 VDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLI 866
++ E ++L+ GLA T + + + Y APE K + DI+ G I
Sbjct: 135 IN--TEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCI 192
Query: 867 LIDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 193 FAEMVTRRALFPGDSE 208
>pdb|2OZA|A Chain A, Structure Of P38alpha Complex
Length = 356
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 20/159 (12%)
Query: 741 PNIVRLHGVCRS----EKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKAL 791
P+IVR+ V + K +V E ++G EL +++ + ++ I +A+
Sbjct: 71 PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAI 130
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINS-------SAYV 844
++LH S ++ DV P ++ K P+ L + + ++ S NS YV
Sbjct: 131 QYLH---SINIAHRDVKPENLLYTSK-RPNAILKLTDFGFAKETTSHNSLTTPCYTPYYV 186
Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV 883
APE + + D++ G+I+ LL G P ++ G+
Sbjct: 187 APEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL 225
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 73/154 (47%), Gaps = 23/154 (14%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRR-------KVAIGIAKALR 792
H +V+L+GVC ++ +++ EY+ L LR + R R ++ + +A+
Sbjct: 78 HEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREM---RHRFQTQQLLEMCKDVCEAME 134
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA------YVA 845
+L S + D++ +V+ D+ +++S GL+ Y D + +S +
Sbjct: 135 YLE---SKQFLHRDLAARNCLVN--DQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSP 189
Query: 846 PETKESKDITEKGDIYGFGLILIDLLT-GKSPAD 878
PE + K DI+ FG+++ ++ + GK P +
Sbjct: 190 PEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYE 223
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 36/169 (21%)
Query: 737 LIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERR-----RKVAIGIAKAL 791
++ H +IVR GVC + +V+EY+ +L+ LR+ + + VA G
Sbjct: 76 MLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLG 135
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSV------PGLA------------YCT 833
+ L VA V+ G V + G H L+ GL Y T
Sbjct: 136 QLL-------AVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYST 188
Query: 834 DSKSINSSA-----YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
D + ++ PE+ + T + D++ FG++L ++ T GK P
Sbjct: 189 DYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQP 237
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 36/169 (21%)
Query: 737 LIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERR-----RKVAIGIAKAL 791
++ H +IVR GVC + +V+EY+ +L+ LR+ + + VA G
Sbjct: 70 MLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLG 129
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSV------PGLA------------YCT 833
+ L VA V+ G V + G H L+ GL Y T
Sbjct: 130 QLL-------AVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYST 182
Query: 834 DSKSINSSA-----YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
D + ++ PE+ + T + D++ FG++L ++ T GK P
Sbjct: 183 DYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQP 231
>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYN|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYO|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
pdb|3NYO|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
Length = 576
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 784 AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSIN--- 839
A I L LH +V D+ P +++D D H+R+S GLA + + ++I
Sbjct: 292 AAEICCGLEDLH---RERIVYRDLKPENILLD--DHGHIRISDLGLAVHVPEGQTIKGRV 346
Query: 840 -SSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
+ Y+APE +++ T D + G +L +++ G+SP
Sbjct: 347 GTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSP 384
>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
pdb|2ACX|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
Length = 576
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 802 VVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSIN----SSAYVAPETKESKDITE 856
+V D+ P +++D D H+R+S GLA + + ++I + Y+APE +++ T
Sbjct: 307 IVYRDLKPENILLD--DHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTF 364
Query: 857 KGDIYGFGLILIDLLTGKSP 876
D + G +L +++ G+SP
Sbjct: 365 SPDWWALGCLLYEMIAGQSP 384
>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
pdb|2BVA|B Chain B, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 292
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFH 797
H N+V ++ ++V E++EG L++++ + ++ E+ V + + +AL LH
Sbjct: 76 HENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLH-- 133
Query: 798 CSPSVVAGDVSPGKVIV--DGKDEPHLRLSVPGLAYCTD-SKS-------INSSAYVAPE 847
+ V+ D+ +++ DG R+ + +C SK + + ++APE
Sbjct: 134 -AQGVIHRDIKSDSILLTHDG------RVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPE 186
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
+ DI+ G+++I+++ G+ P
Sbjct: 187 LISRLPYGPEVDIWSLGIMVIEMVDGEPP 215
>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Pf-03758309
pdb|4APP|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With (S)-N-(5-(3-Benzyl-1-Methylpiperazine-4-
Carbonyl)-6,6-Dimethyl-1,4,5,6-Tetrahydropyrrolo(3,4-C)
Pyrazol-3-Yl)-3-Phenoxybenzamide
Length = 296
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFH 797
H N+V ++ ++V E++EG L++++ + ++ E+ V + + +AL LH
Sbjct: 80 HENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLH-- 137
Query: 798 CSPSVVAGDVSPGKVIV--DGKDEPHLRLSVPGLAYCTD-SKS-------INSSAYVAPE 847
+ V+ D+ +++ DG R+ + +C SK + + ++APE
Sbjct: 138 -AQGVIHRDIKSDSILLTHDG------RVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPE 190
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
+ DI+ G+++I+++ G+ P
Sbjct: 191 LISRLPYGPEVDIWSLGIMVIEMVDGEPP 219
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFH 797
H N+V ++ ++V E++EG L++++ + ++ E+ V + + +AL LH
Sbjct: 85 HENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLH-- 142
Query: 798 CSPSVVAGDVSPGKVIV--DGKDEPHLRLSVPGLAYCTD-SKS-------INSSAYVAPE 847
+ V+ D+ +++ DG R+ + +C SK + + ++APE
Sbjct: 143 -AQGVIHRDIKSDSILLTHDG------RVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPE 195
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
+ DI+ G+++I+++ G+ P
Sbjct: 196 LISRLPYGPEVDIWSLGIMVIEMVDGEPP 224
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFH 797
H N+V ++ ++V E++EG L++++ + ++ E+ V + + +AL LH
Sbjct: 87 HENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLH-- 144
Query: 798 CSPSVVAGDVSPGKVIV--DGKDEPHLRLSVPGLAYCTD-SKS-------INSSAYVAPE 847
+ V+ D+ +++ DG R+ + +C SK + + ++APE
Sbjct: 145 -AQGVIHRDIKSDSILLTHDG------RVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPE 197
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
+ DI+ G+++I+++ G+ P
Sbjct: 198 LISRLPYGPEVDIWSLGIMVIEMVDGEPP 226
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
In Complex With Dasatinib
Length = 265
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 72/151 (47%), Gaps = 17/151 (11%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK----ALRF 793
+ H +V+L+GVC ++ +++ EY+ L LR + + + + + K A+ +
Sbjct: 61 LSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEY 120
Query: 794 LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA------YVAP 846
L S + D++ +V+ D+ +++S GL+ Y D + +S + P
Sbjct: 121 LE---SKQFLHRDLAARNCLVN--DQGVVKVSDFGLSRYVLDDEYTSSRGSKFPVRWSPP 175
Query: 847 ETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
E + K DI+ FG+++ ++ + GK P
Sbjct: 176 EVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP 206
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 101/256 (39%), Gaps = 33/256 (12%)
Query: 707 NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
N V K + T++ +F + +Q K + H +V+L+ V SE+ Y+V EY+
Sbjct: 206 NGTTRVAIKTLKPGTMSPEAFLQE-AQVMKKLRHEKLVQLYAVV-SEEPIYIVGEYMSKG 263
Query: 767 ELSEVLRNLSWERRR---------KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK 817
L + L+ + + R ++A G+A R + H + A ++ G+ +V
Sbjct: 264 SLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVH--RDLRAANILVGENLVCKV 321
Query: 818 DEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ L + Y + + APE T K D++ FG++L +L T G+ P
Sbjct: 322 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 381
Query: 877 ADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVE-IMNLALHCTAGDPT 935
V+ + +D RG+ E E + +L C +P
Sbjct: 382 YPG--MVNREV----------------LDQVERGYRMPCPPECPESLHDLMCQCWRKEPE 423
Query: 936 ARPCASDVTKTLESCF 951
RP + LE F
Sbjct: 424 ERPTFEYLQAFLEDYF 439
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 15/146 (10%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHF 796
P++V+ +G ++V EY +S+++R L+ + + K L +LHF
Sbjct: 84 PHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHF 143
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKS-----INSSAYVAPETKE 850
+ D+ G ++++ E H +L+ G+A TD + I + ++APE +
Sbjct: 144 MRK---IHRDIKAGNILLNT--EGHAKLADFGVAGQLTDXMAKRNXVIGTPFWMAPEVIQ 198
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
DI+ G+ I++ GK P
Sbjct: 199 EIGYNCVADIWSLGITAIEMAEGKPP 224
>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain
pdb|2HW6|B Chain B, Crystal Structure Of Mnk1 Catalytic Domain
Length = 307
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 97/241 (40%), Gaps = 46/241 (19%)
Query: 704 SLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI 763
SL N ++ VK I + S + +V + + NI+ L + YLV+E +
Sbjct: 34 SLQNGKEYAVKIIEKQAGHSRSRVFREVETLYQCQGNKNILELIEFFEDDTRFYLVFEKL 93
Query: 764 EGKE-LSEVLRNLSWERRR--KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEP 820
+G L+ + + + R +V +A AL FLH + + D+ P ++ + ++
Sbjct: 94 QGGSILAHIQKQKHFNEREASRVVRDVAAALDFLH---TKGIAHRDLKPENILCESPEKV 150
Query: 821 --------------HLRLSVPGLAYCTDSKSINSSAYVAPE-----TKESKDITEKGDIY 861
L S + + S+ Y+APE T ++ ++ D++
Sbjct: 151 SPVKICDFDLGSGMKLNNSCTPITTPELTTPCGSAEYMAPEVVEVFTDQATFYDKRCDLW 210
Query: 862 GFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI-QNEIV 920
G++L +L+G P + +C +DC D RG V + QN++
Sbjct: 211 SLGVVLYIMLSGYPP-------------FVGHCGADCGWD-------RGEVCRVCQNKLF 250
Query: 921 E 921
E
Sbjct: 251 E 251
>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536
Length = 294
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 90/216 (41%), Gaps = 34/216 (15%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGK---ELSEVLRNLSWERRRKVAIGIAKALRFL 794
+ H ++V HG ++V E + EL + + L+ R I ++L
Sbjct: 72 LAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYL 131
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSI--NSSAYVAPET 848
H + V+ D+ G + ++ ++ +++ GLA Y + K + + Y+APE
Sbjct: 132 HRN---RVIHRDLKLGNLFLN--EDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEV 186
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPF- 907
K + + D++ G I+ LL GK P + C + +L + +
Sbjct: 187 LSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS-------------CLKETYLRIKKNEYS 233
Query: 908 IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
I H++ + +++ M DPTARP +++
Sbjct: 234 IPKHINPVAASLIQKM------LQTDPTARPTINEL 263
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 99/256 (38%), Gaps = 33/256 (12%)
Query: 707 NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
N V K + T++ +F + +Q K + H +V+L+ V SE+ Y+V EY+
Sbjct: 289 NGTTRVAIKTLKPGTMSPEAFLQE-AQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKG 346
Query: 767 ELSEVLRNLSWERRR---------KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK 817
L + L+ + + R ++A G+A R + H + A ++ G+ +V
Sbjct: 347 SLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD--LRAANILVGENLVCKV 404
Query: 818 DEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ L + Y + + APE T K D++ FG++L +L T G+ P
Sbjct: 405 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 464
Query: 877 ADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVE-IMNLALHCTAGDPT 935
Y +D RG+ E E + +L C +P
Sbjct: 465 ------------------YPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPE 506
Query: 936 ARPCASDVTKTLESCF 951
RP + LE F
Sbjct: 507 ERPTFEYLQAFLEDYF 522
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 31/157 (19%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLH 795
HPNI+RL GV + A +V EY+E L LR + + + G+ +R+L
Sbjct: 109 HPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYL- 167
Query: 796 FHCSPSVVAGDVSPGKVIVDG---------------KDEPHLRLSVPGLAYCTDSKSINS 840
V D++ V+VD +D+P A T +
Sbjct: 168 --SDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPD--------AAXTTTGGKIP 217
Query: 841 SAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ APE + + D++ FG+++ ++L G+ P
Sbjct: 218 IRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERP 254
>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|2OWB|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|3FC2|A Chain A, Plk1 In Complex With Bi6727
Length = 335
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 90/215 (41%), Gaps = 32/215 (14%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGK---ELSEVLRNLSWERRRKVAIGIAKALRFL 794
+ H ++V HG ++V E + EL + + L+ R I ++L
Sbjct: 98 LAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYL 157
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSI--NSSAYVAPET 848
H + V+ D+ G + ++ E +++ GLA Y + K + + Y+APE
Sbjct: 158 HRN---RVIHRDLKLGNLFLNEDLE--VKIGDFGLATKVEYDGERKKVLCGTPNYIAPEV 212
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFI 908
K + + D++ G I+ LL GK P + + E+ + + YS I
Sbjct: 213 LSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS-CLKETYLRIKKNEYS-----------I 260
Query: 909 RGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
H++ + +++ M DPTARP +++
Sbjct: 261 PKHINPVAASLIQKM------LQTDPTARPTINEL 289
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 72/151 (47%), Gaps = 17/151 (11%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK----ALRF 793
+ H +V+L+GVC ++ +++ EY+ L LR + + + + + K A+ +
Sbjct: 67 LSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEY 126
Query: 794 LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA------YVAP 846
L S + D++ +V+ D+ +++S GL+ Y D + +S + P
Sbjct: 127 LE---SKQFLHRDLAARNCLVN--DQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPP 181
Query: 847 ETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
E + K DI+ FG+++ ++ + GK P
Sbjct: 182 EVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP 212
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 72/151 (47%), Gaps = 17/151 (11%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK----ALRF 793
+ H +V+L+GVC ++ +++ EY+ L LR + + + + + K A+ +
Sbjct: 60 LSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEY 119
Query: 794 LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA------YVAP 846
L S + D++ +V+ D+ +++S GL+ Y D + +S + P
Sbjct: 120 LE---SKQFLHRDLAARNCLVN--DQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPP 174
Query: 847 ETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
E + K DI+ FG+++ ++ + GK P
Sbjct: 175 EVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP 205
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 72/151 (47%), Gaps = 17/151 (11%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK----ALRF 793
+ H +V+L+GVC ++ +++ EY+ L LR + + + + + K A+ +
Sbjct: 61 LSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEY 120
Query: 794 LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA------YVAP 846
L S + D++ +V+ D+ +++S GL+ Y D + +S + P
Sbjct: 121 LE---SKQFLHRDLAARNCLVN--DQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPP 175
Query: 847 ETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
E + K DI+ FG+++ ++ + GK P
Sbjct: 176 EVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP 206
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 72/151 (47%), Gaps = 17/151 (11%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK----ALRF 793
+ H +V+L+GVC ++ +++ EY+ L LR + + + + + K A+ +
Sbjct: 56 LSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEY 115
Query: 794 LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA------YVAP 846
L S + D++ +V+ D+ +++S GL+ Y D + +S + P
Sbjct: 116 LE---SKQFLHRDLAARNCLVN--DQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPP 170
Query: 847 ETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
E + K DI+ FG+++ ++ + GK P
Sbjct: 171 EVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP 201
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 90/231 (38%), Gaps = 32/231 (13%)
Query: 732 SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRR---------K 782
+Q K + H +V+L+ V SE+ Y+V EY+ L + L+ + R +
Sbjct: 231 AQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQ 289
Query: 783 VAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA 842
+A G+A R + H + A ++ G+ +V + L + Y +
Sbjct: 290 IASGMAYVERMNYVH--RDLRAANILVGENLVCKVADFGLGRLIEDNEYTARQGAKFPIK 347
Query: 843 YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLD 901
+ APE T K D++ FG++L +L T G+ P V+ +
Sbjct: 348 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPG--MVNREV-------------- 391
Query: 902 TWVDPFIRGHVSSIQNEIVE-IMNLALHCTAGDPTARPCASDVTKTLESCF 951
+D RG+ E E + +L C DP RP + LE F
Sbjct: 392 --LDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLEDYF 440
>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A
Benzolactam-Derived Inhibitor
Length = 333
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 34/216 (15%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGK---ELSEVLRNLSWERRRKVAIGIAKALRFL 794
+ H ++V HG ++V E + EL + + L+ R I ++L
Sbjct: 96 LAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYL 155
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSI--NSSAYVAPET 848
H + V+ D+ G + ++ E +++ GLA Y + K + + Y+APE
Sbjct: 156 HRN---RVIHRDLKLGNLFLNEDLE--VKIGDFGLATKVEYDGERKKVLCGTPNYIAPEV 210
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPF- 907
K + + D++ G I+ LL GK P + C + +L + +
Sbjct: 211 LSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS-------------CLKETYLRIKKNEYS 257
Query: 908 IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
I H++ + +++ M DPTARP +++
Sbjct: 258 IPKHINPVAASLIQKM------LQTDPTARPTINEL 287
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 17/150 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWE----RRRKVAIGIAKALRFLH 795
HPN+V L GV K +V E++E L LR + + + GIA +R+L
Sbjct: 103 HPNVVHLEGVVTRGKPVMIVIEFMENGALDAFLRKHDGQFTVIQLVGMLRGIAAGMRYL- 161
Query: 796 FHCSPSVVAGDVSPGKVIVDGK---DEPHLRLSV-----PGLAYCTDSKSINSSAYVAPE 847
V D++ ++V+ LS P Y T I + APE
Sbjct: 162 --ADMGYVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGKI-PVRWTAPE 218
Query: 848 TKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ + T D++ +G+++ ++++ G+ P
Sbjct: 219 AIQYRKFTSASDVWSYGIVMWEVMSYGERP 248
>pdb|3R1N|A Chain A, Mk3 Kinase Bound To Compound 5b
pdb|3SHE|A Chain A, Novel Atp-Competitive Mk2 Inhibitors With Potent
Biochemical And Cell- Based Activity Throughout The
Series
Length = 317
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 758 LVYEYIEGKELSEVLR---NLSWERRRKVAI--GIAKALRFLHFHCSPSVVAGDVSPGKV 812
++ E +EG EL ++ + ++ R I I A++FLH H ++ DV P +
Sbjct: 84 IIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENL 140
Query: 813 IVDGKDEPH-LRLSVPGLAYCTDSKSINSSAY----VAPETKESKDITEKGDIYGFGLIL 867
+ K++ L+L+ G A T ++ + Y VAPE + + D++ G+I+
Sbjct: 141 LYTSKEKDAVLKLTDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIM 200
Query: 868 IDLLTGKSPADADFG 882
LL G P ++ G
Sbjct: 201 YILLCGFPPFYSNTG 215
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 65/149 (43%), Gaps = 21/149 (14%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAI--GIAKALRFLHFH 797
+PNIV ++V EY+ G L++V+ + + A+ +AL FLH
Sbjct: 76 NPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLH-- 133
Query: 798 CSPSVVAGDVSPGKVI--VDGKDEPHLRLSVPGLAYCTD--------SKSINSSAYVAPE 847
S V+ D+ ++ +DG + + +C S+ + + ++APE
Sbjct: 134 -SNQVIHRDIKSDNILLGMDGS------VKLTDFGFCAQITPEQSKRSEMVGTPYWMAPE 186
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
K K DI+ G++ I+++ G+ P
Sbjct: 187 VVTRKAYGPKVDIWSLGIMAIEMIEGEPP 215
>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A60|B Chain B, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A61|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form Ii)
Length = 327
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 20/214 (9%)
Query: 678 EIISSTTEENLTSRGKKGVSSSYKVRSL--ANDMQF----VVKKIIDVNTITTSSFWPDV 731
E I E L GK G ++VR + AN + V+KK + V ++
Sbjct: 12 EKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAE 71
Query: 732 SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK-A 790
+ + HP IV L ++ YL+ EY+ G EL L +A+ +
Sbjct: 72 RNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEIS 131
Query: 791 LRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS--------KSINSSA 842
+ H H ++ D+ P ++++ + H++L+ GL C +S +
Sbjct: 132 MALGHLH-QKGIIYRDLKPENIMLN--HQGHVKLTDFGL--CKESIHDGTVTHTFCGTIE 186
Query: 843 YVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
Y+APE D + G ++ D+LTG P
Sbjct: 187 YMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPP 220
>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1
Length = 327
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 20/214 (9%)
Query: 678 EIISSTTEENLTSRGKKGVSSSYKVRSL--ANDMQF----VVKKIIDVNTITTSSFWPDV 731
E I E L GK G ++VR + AN + V+KK + V ++
Sbjct: 12 EKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAE 71
Query: 732 SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK-A 790
+ + HP IV L ++ YL+ EY+ G EL L +A+ +
Sbjct: 72 RNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEIS 131
Query: 791 LRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS--------KSINSSA 842
+ H H ++ D+ P ++++ + H++L+ GL C +S +
Sbjct: 132 MALGHLH-QKGIIYRDLKPENIMLN--HQGHVKLTDFGL--CKESIHDGTVTHXFCGTIE 186
Query: 843 YVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
Y+APE D + G ++ D+LTG P
Sbjct: 187 YMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPP 220
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 14/180 (7%)
Query: 707 NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
N V K + T++ +F + +Q K + H +V+L+ V SE+ Y+V EY+
Sbjct: 33 NGTTRVAIKTLKPGTMSPEAFLQE-AQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKG 90
Query: 767 ELSEVLRNLSWERRR---------KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK 817
L + L+ + + R ++A G+A R + H + A ++ G+ +V
Sbjct: 91 SLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVH--RDLRAANILVGENLVCKV 148
Query: 818 DEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ L + Y + + APE T K D++ FG++L +L T G+ P
Sbjct: 149 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 208
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 38.1 bits (87), Expect = 0.024, Method: Composition-based stats.
Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 14/180 (7%)
Query: 707 NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
N V K + T++ +F + +Q K + H +V+L+ V SE+ Y+V EY+
Sbjct: 37 NGTTRVAIKTLKPGTMSPEAFLQE-AQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMNKG 94
Query: 767 ELSEVLRNLSWERRR---------KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK 817
L + L+ + + R ++A G+A R + H + A ++ G+ +V
Sbjct: 95 SLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERMNYVH--RDLRAANILVGENLVCKV 152
Query: 818 DEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ L + Y + + APE T K D++ FG++L +L T G+ P
Sbjct: 153 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 212
>pdb|3FHR|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated
Protein Kinase-Activated Protein Kinase 3
(Mk3)-Inhibitor Complex
pdb|3FXW|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated
Protein Kinase- Activated Protein Kinase 3INHIBITOR 2
COMPLEX
Length = 336
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 758 LVYEYIEGKELSEVLR---NLSWERRRKVAI--GIAKALRFLHFHCSPSVVAGDVSPGKV 812
++ E +EG EL ++ + ++ R I I A++FLH H ++ DV P +
Sbjct: 103 IIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENL 159
Query: 813 IVDGKDEPH-LRLSVPGLAYCTDSKSINSSAY----VAPETKESKDITEKGDIYGFGLIL 867
+ K++ L+L+ G A T ++ + Y VAPE + + D++ G+I+
Sbjct: 160 LYTSKEKDAVLKLTDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIM 219
Query: 868 IDLLTGKSPADADFG 882
LL G P ++ G
Sbjct: 220 YILLCGFPPFYSNTG 234
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 4/164 (2%)
Query: 206 LKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS-FGNLSNLRYLFLYQNKL 264
LK++ L +N + +G L L HLD ++NL S F +L NL YL +
Sbjct: 375 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 265 TGSIPKSILGLKSLVSFDLSDN-YLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASM 323
+ GL SL ++ N + +P+ +L+NL L L P++ S+
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 324 PKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTN-FLTGKIPE 366
LQVL + N F N+L V+D S N +T K E
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Query: 137 LDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSI 196
LDLS N L SF L+VLDL + + +++ L L N +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 197 PREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG-QIPPSFGNLSNLR 255
L +L+ + NL+ IG L +L L++ +N + ++P F NL+NL
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 256 YLFLYQNKL 264
+L L NK+
Sbjct: 153 HLDLSSNKI 161
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 459 KLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLV 518
K+PD+ +NLDLS N SF EL L +SR ++ S L
Sbjct: 21 KIPDNLPFST-KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79
Query: 519 SLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHN 573
+L L+ N + + S + L +L E L+ +G + +L ++N++HN
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 38.1 bits (87), Expect = 0.026, Method: Composition-based stats.
Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 14/180 (7%)
Query: 707 NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
N V K + T++ +F + +Q K I H +V+L+ V SE+ Y+V EY+
Sbjct: 40 NGTTRVAIKTLKPGTMSPEAFLQE-AQVMKKIRHEKLVQLYAVV-SEEPIYIVTEYMSKG 97
Query: 767 ELSEVLRNLSWERRR---------KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK 817
L + L+ + R ++A G+A R + H + A ++ G+ +V
Sbjct: 98 SLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVH--RDLRAANILVGENLVCKV 155
Query: 818 DEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ L + Y + + APE T K D++ FG++L +L T G+ P
Sbjct: 156 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 215
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 136/524 (25%), Positives = 201/524 (38%), Gaps = 98/524 (18%)
Query: 130 SLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVL--VGEIPLSISNITSLQIFTL 187
SL LE LDLS+N LS G S LK L+L GN +G L N+T+LQ +
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-FPNLTNLQTLRI 130
Query: 188 ASNQLIGSIPR----EIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQ 243
+ + I R + L L+ L N + K I D+ +HL L +
Sbjct: 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI---HHLTLHLSESAFL 187
Query: 244 IPPSFGNLSNLRYLFLYQNKLTG-----------SIPKSILGLKSLVSFDLSDNYLSGEI 292
+ LS++RYL L L S P L + V D S N L ++
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL-KL 246
Query: 293 PEEVIQLQNLEILHLFSNNF------TGKIPSSLASMPKLQVLQLWSNQFS-----GEIP 341
+++L +E N + S L + + + +L QF +
Sbjct: 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306
Query: 342 SNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSL--EGKIPNSLSTCK--- 396
S L K +TV + S FL +P + + + S +L E + NS CK
Sbjct: 307 SLLEKVKRITVEN-SKVFL---VPCSFSQHLKSLEFLDLSENLMVEEYLKNS--ACKGAW 360
Query: 397 -SLRRVRLQNNRL-----SGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLN 450
SL+ + L N L +GE+ L + LDIS N +W ++ LN
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEI---LLTLKNLTSLDISRNTFHPMPDSCQWP-EKMRFLN 416
Query: 451 LAGNNFSGKLPDSFGSDQLENLDLSENR---FSGTIPRSFGRLSELMQLKISRNKLFGDI 507
L+ ++ + LE LD+S N FS +PR L +L ISRNKL +
Sbjct: 417 LSSTGI--RVVKTCIPQTLEVLDVSNNNLDSFSLFLPR-------LQELYISRNKL-KTL 466
Query: 508 PEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQ 567
P+ ASL PVL + +S NQL R+ SL +
Sbjct: 467 PD-----------------------ASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501
Query: 568 VNISHNHFHGSLPST---GAFLAINATAVAGNDLCGGDSTSGLP 608
+ + N + S P +L N+ G+ C G SG P
Sbjct: 502 IWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG---SGKP 542
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 225 GDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLS 284
G ++ LDL +N +T +NL+ L L +++ + L SL DLS
Sbjct: 23 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82
Query: 285 DNYLSGEIPEEVIQLQNLEILHLFSNNF-TGKIPSSLASMPKLQVLQLWSNQFSGEI 340
DN+LS L +L+ L+L N + T + S ++ LQ L++ + + EI
Sbjct: 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 14/180 (7%)
Query: 707 NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
N V K + T++ +F + +Q K + H +V+L+ V SE+ Y+V EY+
Sbjct: 40 NGTTRVAIKTLKPGTMSPEAFLQE-AQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKG 97
Query: 767 ELSEVLRNLSWERRR---------KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK 817
L + L+ + R ++A G+A R + H + A ++ G+ +V
Sbjct: 98 SLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVH--RDLAAANILVGENLVCKV 155
Query: 818 DEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ L + Y + + APE T K D++ FG++L +L T G+ P
Sbjct: 156 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 215
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 17/150 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWE----RRRKVAIGIAKALRFLH 795
HPNI+RL GV K +V E +E L LR + + + GIA +++L
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYL- 163
Query: 796 FHCSPSVVAGDVSPGKVIVDGK------DEPHLRL--SVPGLAYCTDSKSINSSAYVAPE 847
V D++ ++++ D R+ P AY T I + +PE
Sbjct: 164 --SDMGAVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI-PIRWTSPE 220
Query: 848 TKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ T D++ +G++L ++++ G+ P
Sbjct: 221 AIAYRKFTSASDVWSYGIVLWEVMSYGERP 250
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 17/150 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALR----FLH 795
HPNI+ L GV K ++ EY+E L LR R I + LR +
Sbjct: 89 HPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRK---NDGRFTVIQLVGMLRGIGSGMK 145
Query: 796 FHCSPSVVAGDVSPGKVIVDGK------DEPHLRL--SVPGLAYCTDSKSINSSAYVAPE 847
+ S V D++ ++V+ D R+ P AY T I + APE
Sbjct: 146 YLSDMSAVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKI-PIRWTAPE 204
Query: 848 TKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ T D++ +G+++ ++++ G+ P
Sbjct: 205 AIAYRKFTSASDVWSYGIVMWEVMSYGERP 234
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 153 GSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLR---NLKWI 209
G+ L LDL N L +PL + +L + ++ N+L S+P +G LR L+ +
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 210 YLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGN-LSNLRYLFLYQNKLTGSI 268
YL N L P + L L L NNLT ++P N L NL L L +N L +I
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 269 PKSILG 274
PK G
Sbjct: 188 PKGFFG 193
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 73/175 (41%), Gaps = 33/175 (18%)
Query: 378 ILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIG 437
+L++ SL +P + T +L R L ++ G LP++ LD+S N
Sbjct: 42 LLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG-------TLPVLGTLDLSHN------- 87
Query: 438 EQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLK 497
LQ L L G L LD+S NR + + L EL +L
Sbjct: 88 -------QLQSLPLLGQTLPA----------LTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 498 ISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPAS-LSEMPVLGQLDLSENQL 551
+ N+L P L+ KL L L+NN L+ +PA L+ + L L L EN L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 321 ASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILF 380
++P L L L NQ +P LTV+D+S N LT L G L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 381 SNSLEGKIPNSLSTCKSLRRVRLQNNRLS 409
N L+ P L+ L ++ L NN L+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 311
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 88/216 (40%), Gaps = 34/216 (15%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGK---ELSEVLRNLSWERRRKVAIGIAKALRFL 794
+ H ++V HG ++V E + EL + + L+ R I ++L
Sbjct: 74 LAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYL 133
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSI--NSSAYVAPET 848
H + V+ D+ G + ++ E +++ GLA Y + K + Y+APE
Sbjct: 134 HRN---RVIHRDLKLGNLFLNEDLE--VKIGDFGLATKVEYDGERKKTLCGTPNYIAPEV 188
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPF- 907
K + + D++ G I+ LL GK P + C + +L + +
Sbjct: 189 LSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS-------------CLKETYLRIKKNEYS 235
Query: 908 IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
I H++ + +++ M DPTARP +++
Sbjct: 236 IPKHINPVAASLIQKM------LQTDPTARPTINEL 265
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 21/149 (14%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAI--GIAKALRFLHFH 797
+PNIV ++V EY+ G L++V+ + + A+ +AL FLH
Sbjct: 77 NPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLH-- 134
Query: 798 CSPSVVAGDVSPGKVI--VDGKDEPHLRLSVPGLAYCTD--------SKSINSSAYVAPE 847
S V+ D+ ++ +DG + + +C S + + ++APE
Sbjct: 135 -SNQVIHRDIKSDNILLGMDGS------VKLTDFGFCAQITPEQSKRSXMVGTPYWMAPE 187
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
K K DI+ G++ I+++ G+ P
Sbjct: 188 VVTRKAYGPKVDIWSLGIMAIEMIEGEPP 216
>pdb|1RJB|A Chain A, Crystal Structure Of Flt3
Length = 344
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 95/232 (40%), Gaps = 48/232 (20%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIID-VNTITTSSFWPDVSQFGKLIMHPNIVRLHGVC 750
GK +++Y + +Q VK + + ++ + ++ +L H NIV L G C
Sbjct: 59 GKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGAC 118
Query: 751 RSEKAAYLVYEYIEGKELSEVLRN---------LSWERRRKV-----------------A 784
YL++EY +L LR+ + +E ++++ A
Sbjct: 119 TLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFA 178
Query: 785 IGIAKALRFLHFHCSPSVVAGDVSPGKVIV-DGKDEPHLRLSVPGLA--------YCTDS 835
+AK + FL F S V D++ V+V GK +++ GLA Y
Sbjct: 179 YQVAKGMEFLEFK---SCVHRDLAARNVLVTHGK---VVKICDFGLARDIMSDSNYVVRG 232
Query: 836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT------GKSPADADF 881
+ ++APE+ T K D++ +G++L ++ + P DA+F
Sbjct: 233 NARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANF 284
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 21/149 (14%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAI--GIAKALRFLHFH 797
+PNIV ++V EY+ G L++V+ + + A+ +AL FLH
Sbjct: 76 NPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLH-- 133
Query: 798 CSPSVVAGDVSPGKVI--VDGKDEPHLRLSVPGLAYCTD--------SKSINSSAYVAPE 847
S V+ D+ ++ +DG + + +C S + + ++APE
Sbjct: 134 -SNQVIHRDIKSDNILLGMDGS------VKLTDFGFCAQITPEQSKRSTMVGTPYWMAPE 186
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
K K DI+ G++ I+++ G+ P
Sbjct: 187 VVTRKAYGPKVDIWSLGIMAIEMIEGEPP 215
>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With
Nms-P937
pdb|4A4L|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
5-(2-Amino-Pyrimidin-4-Yl)-1h-Pyrrole Inhibitor
pdb|4A4O|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
2-
(2-Amino-Pyrimidin-4-Yl)-1,5,6,
7-Tetrahydro-Pyrrolopyridin- 4-One Inhibitor
Length = 311
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 88/216 (40%), Gaps = 34/216 (15%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGK---ELSEVLRNLSWERRRKVAIGIAKALRFL 794
+ H ++V HG ++V E + EL + + L+ R I ++L
Sbjct: 74 LAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYL 133
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSI--NSSAYVAPET 848
H + V+ D+ G + ++ E +++ GLA Y + K + Y+APE
Sbjct: 134 HRN---RVIHRDLKLGNLFLNEDLE--VKIGDFGLATKVEYDGERKKTLCGTPNYIAPEV 188
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPF- 907
K + + D++ G I+ LL GK P + C + +L + +
Sbjct: 189 LSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS-------------CLKETYLRIKKNEYS 235
Query: 908 IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
I H++ + +++ M DPTARP +++
Sbjct: 236 IPKHINPVAASLIQKM------LQTDPTARPTINEL 265
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 153 GSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLR---NLKWI 209
G+ L LDL N L +PL + +L + ++ N+L S+P +G LR L+ +
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 210 YLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGN-LSNLRYLFLYQNKLTGSI 268
YL N L P + L L L NNLT ++P N L NL L L +N L +I
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 269 PKSILG 274
PK G
Sbjct: 188 PKGFFG 193
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 73/175 (41%), Gaps = 33/175 (18%)
Query: 378 ILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIG 437
+L++ SL +P + T +L R L ++ G LP++ LD+S N
Sbjct: 42 LLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG-------TLPVLGTLDLSHN------- 87
Query: 438 EQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLK 497
LQ L L G L LD+S NR + + L EL +L
Sbjct: 88 -------QLQSLPLLGQTLPA----------LTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 498 ISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPAS-LSEMPVLGQLDLSENQL 551
+ N+L P L+ KL L L+NN L+ +PA L+ + L L L EN L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 321 ASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILF 380
++P L L L NQ +P LTV+D+S N LT L G L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 381 SNSLEGKIPNSLSTCKSLRRVRLQNNRLS 409
N L+ P L+ L ++ L NN L+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 21/149 (14%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAI--GIAKALRFLHFH 797
+PNIV ++V EY+ G L++V+ + + A+ +AL FLH
Sbjct: 76 NPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLH-- 133
Query: 798 CSPSVVAGDVSPGKVI--VDGKDEPHLRLSVPGLAYCTD--------SKSINSSAYVAPE 847
S V+ D+ ++ +DG + + +C S + + ++APE
Sbjct: 134 -SNQVIHRDIKSDNILLGMDGS------VKLTDFGFCAQITPEQSKRSXMVGTPYWMAPE 186
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
K K DI+ G++ I+++ G+ P
Sbjct: 187 VVTRKAYGPKVDIWSLGIMAIEMIEGEPP 215
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 153 GSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLR---NLKWI 209
G+ L LDL N L +PL + +L + ++ N+L S+P +G LR L+ +
Sbjct: 75 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 130
Query: 210 YLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGN-LSNLRYLFLYQNKLTGSI 268
YL N L P + L L L NNLT ++P N L NL L L +N L +I
Sbjct: 131 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TI 188
Query: 269 PKSILG 274
PK G
Sbjct: 189 PKGFFG 194
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 73/175 (41%), Gaps = 33/175 (18%)
Query: 378 ILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIG 437
+L++ SL +P + T +L R L ++ G LP++ LD+S N
Sbjct: 43 LLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG-------TLPVLGTLDLSHN------- 88
Query: 438 EQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLK 497
LQ L L G L LD+S NR + + L EL +L
Sbjct: 89 -------QLQSLPLLGQTLPA----------LTVLDVSFNRLTSLPLGALRGLGELQELY 131
Query: 498 ISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPAS-LSEMPVLGQLDLSENQL 551
+ N+L P L+ KL L L+NN L+ +PA L+ + L L L EN L
Sbjct: 132 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 185
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 321 ASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILF 380
++P L L L NQ +P LTV+D+S N LT L G L +L L
Sbjct: 75 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 381 SNSLEGKIPNSLSTCKSLRRVRLQNNRLS 409
N L+ P L+ L ++ L NN L+
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLT 162
>pdb|4G3G|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase
(nik) V408l Bound To A 2-(aminothiazolyl)phenol (cmp3)
Length = 350
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 12/152 (7%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSP 800
P IV L+G R + E +EG L ++++ + + + +AL L + +
Sbjct: 124 PRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTR 183
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS-----------AYVAPETK 849
++ GDV V++ D L G A C + S ++APE
Sbjct: 184 RILHGDVKADNVLLS-SDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVV 242
Query: 850 ESKDITEKGDIYGFGLILIDLLTGKSPADADF 881
K K DI+ +++ +L G P F
Sbjct: 243 MGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYF 274
>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6
Length = 321
Score = 37.4 bits (85), Expect = 0.036, Method: Composition-based stats.
Identities = 31/153 (20%), Positives = 73/153 (47%), Gaps = 21/153 (13%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFH 797
H N+V ++ + +++ E+++G L++++ L+ E+ V + +AL +LH
Sbjct: 101 HFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIV--DGKDEPHLRLSVPGLAYCTD-SKSI-------NSSAYVAPE 847
+ V+ D+ +++ DG R+ + +C SK + + ++APE
Sbjct: 159 -AQGVIHRDIKSDSILLTLDG------RVKLSDFGFCAQISKDVPKRKXLVGTPYWMAPE 211
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
+ DI+ G+++I+++ G+ P +D
Sbjct: 212 VISRSLYATEVDIWSLGIMVIEMVDGEPPYFSD 244
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 21/196 (10%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 27 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 86
Query: 759 VYEYIEGKELSE-----VLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
V+E++ ++L + L + + + + L F H H V+ D+ P ++
Sbjct: 87 VFEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLL 142
Query: 814 VDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLI 866
++ E ++L+ GLA T + + + Y APE K + DI+ G I
Sbjct: 143 IN--TEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGXKYYSTAVDIWSLGCI 200
Query: 867 LIDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 201 FAEMVTRRALFPGDSE 216
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 17/150 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWE----RRRKVAIGIAKALRFLH 795
HPNI+RL GV K +V E +E L LR + + + GIA +++L
Sbjct: 76 HPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYL- 134
Query: 796 FHCSPSVVAGDVSPGKVIVDG------KDEPHLRL--SVPGLAYCTDSKSINSSAYVAPE 847
V D++ ++++ D R+ P AY T I + +PE
Sbjct: 135 --SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI-PIRWTSPE 191
Query: 848 TKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ T D++ +G++L ++++ G+ P
Sbjct: 192 AIAYRKFTSASDVWSYGIVLWEVMSYGERP 221
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 21/196 (10%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 21 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 80
Query: 759 VYEYIEGKELSE-----VLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
V+E++ ++L + L + + + + L F H H V+ D+ P ++
Sbjct: 81 VFEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLL 136
Query: 814 VDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLI 866
++ E ++L+ GLA T + + + Y APE K + DI+ G I
Sbjct: 137 IN--TEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCI 194
Query: 867 LIDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 195 FAEMVTRRALFPGDSE 210
>pdb|4EXU|A Chain A, Mapk13, Inactive Form
pdb|4EYJ|A Chain A, Mapk13 Complex With Inhibitor
pdb|4EYM|A Chain A, Mapk13 Complex With Inhibitor
Length = 371
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 17/151 (11%)
Query: 736 KLIMHPNIVRLHGV------CRSEKAAYLVYEYIEGKELSEVL-RNLSWERRRKVAIGIA 788
K + H N++ L V R+ YLV +++ +L +++ S E+ + + +
Sbjct: 96 KHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQT-DLQKIMGMEFSEEKIQYLVYQML 154
Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYVA 845
K L+++H S VV D+ PG + V+ ++ L++ GLA D++ + + Y A
Sbjct: 155 KGLKYIH---SAGVVHRDLKPGNLAVN--EDCELKILDFGLARHADAEMTGYVVTRWYRA 209
Query: 846 PETKES-KDITEKGDIYGFGLILIDLLTGKS 875
PE S + DI+ G I+ ++LTGK+
Sbjct: 210 PEVILSWMHYNQTVDIWSVGCIMAEMLTGKT 240
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 21/196 (10%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 27 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 86
Query: 759 VYEYIEGKELSE-----VLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
V+E++ ++L + L + + + + L F H H V+ D+ P ++
Sbjct: 87 VFEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLL 142
Query: 814 VDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLI 866
++ E ++L+ GLA T + + + Y APE K + DI+ G I
Sbjct: 143 IN--TEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCI 200
Query: 867 LIDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 201 FAEMVTRRALFPGDSE 216
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 135/524 (25%), Positives = 201/524 (38%), Gaps = 98/524 (18%)
Query: 130 SLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVL--VGEIPLSISNITSLQIFTL 187
SL LE LDLS+N LS G S LK L+L GN +G L N+T+LQ +
Sbjct: 98 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-FPNLTNLQTLRI 156
Query: 188 ASNQLIGSIPR----EIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQ 243
+ + I R + L L+ L N + K I D+ +HL L +
Sbjct: 157 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI---HHLTLHLSESAFL 213
Query: 244 IPPSFGNLSNLRYLFLYQNKLTG-----------SIPKSILGLKSLVSFDLSDNYLSGEI 292
+ LS++RYL L L S P L + V D S N L ++
Sbjct: 214 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL-KL 272
Query: 293 PEEVIQLQNLEILHLFSNNF------TGKIPSSLASMPKLQVLQLWSNQFS-----GEIP 341
+++L +E N + S L + + + +L QF +
Sbjct: 273 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 332
Query: 342 SNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSL--EGKIPNSLSTCK--- 396
S L K +TV + S FL +P + + + S +L E + NS CK
Sbjct: 333 SLLEKVKRITVEN-SKVFL---VPCSFSQHLKSLEFLDLSENLMVEEYLKNS--ACKGAW 386
Query: 397 -SLRRVRLQNNRL-----SGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLN 450
SL+ + L N L +GE+ L + LDIS N +W ++ LN
Sbjct: 387 PSLQTLVLSQNHLRSMQKTGEI---LLTLKNLTSLDISRNTFHPMPDSCQWP-EKMRFLN 442
Query: 451 LAGNNFSGKLPDSFGSDQLENLDLSENR---FSGTIPRSFGRLSELMQLKISRNKLFGDI 507
L+ ++ + LE LD+S N FS +PR L +L ISRNKL +
Sbjct: 443 LSSTGI--RVVKTCIPQTLEVLDVSNNNLDSFSLFLPR-------LQELYISRNKL-KTL 492
Query: 508 PEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQ 567
P+ ASL PVL + ++ NQL R+ SL +
Sbjct: 493 PD-----------------------ASL--FPVLLVMKIASNQLKSVPDGIFDRLTSLQK 527
Query: 568 VNISHNHFHGSLPST---GAFLAINATAVAGNDLCGGDSTSGLP 608
+ + N + S P +L N+ G+ C G SG P
Sbjct: 528 IWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG---SGKP 568
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 225 GDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLS 284
G ++ LDL +N +T +NL+ L L +++ + L SL DLS
Sbjct: 49 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 108
Query: 285 DNYLSGEIPEEVIQLQNLEILHLFSNNF-TGKIPSSLASMPKLQVLQLWSNQFSGEI 340
DN+LS L +L+ L+L N + T + S ++ LQ L++ + + EI
Sbjct: 109 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 165
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 21/196 (10%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 20 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 79
Query: 759 VYEYIEGKELSE-----VLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
V+E++ ++L + L + + + + L F H H V+ D+ P ++
Sbjct: 80 VFEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLL 135
Query: 814 VDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLI 866
++ E ++L+ GLA T + + + Y APE K + DI+ G I
Sbjct: 136 IN--TEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCI 193
Query: 867 LIDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 194 FAEMVTRRALFPGDSE 209
>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|B Chain B, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 315
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 88/216 (40%), Gaps = 34/216 (15%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGK---ELSEVLRNLSWERRRKVAIGIAKALRFL 794
+ H ++V HG ++V E + EL + + L+ R I ++L
Sbjct: 78 LAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYL 137
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSI--NSSAYVAPET 848
H + V+ D+ G + ++ E +++ GLA Y + K + Y+APE
Sbjct: 138 HRN---RVIHRDLKLGNLFLNEDLE--VKIGDFGLATKVEYDGERKKTLCGTPNYIAPEV 192
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPF- 907
K + + D++ G I+ LL GK P + C + +L + +
Sbjct: 193 LSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS-------------CLKETYLRIKKNEYS 239
Query: 908 IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
I H++ + +++ M DPTARP +++
Sbjct: 240 IPKHINPVAASLIQKM------LQTDPTARPTINEL 269
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 17/150 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALR----FLH 795
HPNI+ L GV K ++ EY+E L LR R I + LR +
Sbjct: 68 HPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRK---NDGRFTVIQLVGMLRGIGSGMK 124
Query: 796 FHCSPSVVAGDVSPGKVIVDGK------DEPHLRL--SVPGLAYCTDSKSINSSAYVAPE 847
+ S V D++ ++V+ D R+ P AY T I + APE
Sbjct: 125 YLSDMSYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKI-PIRWTAPE 183
Query: 848 TKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ T D++ +G+++ ++++ G+ P
Sbjct: 184 AIAYRKFTSASDVWSYGIVMWEVMSYGERP 213
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 17/150 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALR----FLH 795
HPNI+ L GV K ++ EY+E L LR R I + LR +
Sbjct: 74 HPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRK---NDGRFTVIQLVGMLRGIGSGMK 130
Query: 796 FHCSPSVVAGDVSPGKVIVDGK------DEPHLRL--SVPGLAYCTDSKSINSSAYVAPE 847
+ S V D++ ++V+ D R+ P AY T I + APE
Sbjct: 131 YLSDMSYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKI-PIRWTAPE 189
Query: 848 TKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ T D++ +G+++ ++++ G+ P
Sbjct: 190 AIAYRKFTSASDVWSYGIVMWEVMSYGERP 219
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 19/195 (9%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 20 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 79
Query: 759 VYEYIEG--KEL--SEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV 814
V+E++ K+ + L + + + + L F H H V+ D+ P +++
Sbjct: 80 VFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLSFCHSH---RVLHRDLKPQNLLI 136
Query: 815 DGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLIL 867
+ E ++L+ GLA T + + + Y APE K + DI+ G I
Sbjct: 137 N--TEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIF 194
Query: 868 IDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 195 AEMVTRRALFPGDSE 209
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 153 GSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLR---NLKWI 209
G+ L LDL N L +PL + +L + ++ N+L S+P +G LR L+ +
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 210 YLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGN-LSNLRYLFLYQNKLTGSI 268
YL N L P + L L L NNLT ++P N L NL L L +N L +I
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 269 PKSILG 274
PK G
Sbjct: 188 PKGFFG 193
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 73/175 (41%), Gaps = 33/175 (18%)
Query: 378 ILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIG 437
+L++ SL +P + T +L R L ++ G LP++ LD+S N
Sbjct: 42 LLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG-------TLPVLGTLDLSHN------- 87
Query: 438 EQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLK 497
LQ L L G L LD+S NR + + L EL +L
Sbjct: 88 -------QLQSLPLLGQTLPA----------LTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 498 ISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPAS-LSEMPVLGQLDLSENQL 551
+ N+L P L+ KL L L+NN L+ +PA L+ + L L L EN L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 321 ASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILF 380
++P L L L NQ +P LTV+D+S N LT L G L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 381 SNSLEGKIPNSLSTCKSLRRVRLQNNRLS 409
N L+ P L+ L ++ L NN L+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 19/195 (9%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 19 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 78
Query: 759 VYEYIEG--KEL--SEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV 814
V+E++ K+ + L + + + + L F H H V+ D+ P +++
Sbjct: 79 VFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLI 135
Query: 815 DGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLIL 867
+ E ++L+ GLA T + + + Y APE K + DI+ G I
Sbjct: 136 N--TEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIF 193
Query: 868 IDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 194 AEMVTRRALFPGDSE 208
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 153 GSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLR---NLKWI 209
G+ L LDL N L +PL + +L + ++ N+L S+P +G LR L+ +
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 210 YLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGN-LSNLRYLFLYQNKLTGSI 268
YL N L P + L L L NNLT ++P N L NL L L +N L +I
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 269 PKSILG 274
PK G
Sbjct: 188 PKGFFG 193
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 73/175 (41%), Gaps = 33/175 (18%)
Query: 378 ILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIG 437
+L++ SL +P + T +L R L ++ G LP++ LD+S N
Sbjct: 42 LLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG-------TLPVLGTLDLSHN------- 87
Query: 438 EQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLK 497
LQ L L G L LD+S NR + + L EL +L
Sbjct: 88 -------QLQSLPLLGQTLPA----------LTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 498 ISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPAS-LSEMPVLGQLDLSENQL 551
+ N+L P L+ KL L L+NN L+ +PA L+ + L L L EN L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 321 ASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILF 380
++P L L L NQ +P LTV+D+S N LT L G L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 381 SNSLEGKIPNSLSTCKSLRRVRLQNNRLS 409
N L+ P L+ L ++ L NN L+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma
pdb|1CM8|B Chain B, Phosphorylated Map Kinase P38-Gamma
Length = 367
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 78/152 (51%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKAA------YLVYEYIEGKELSEVLRN--LSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L +++++ L +R + + +
Sbjct: 79 KHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKHEKLGEDRIQFLVYQM 137
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
K LR++H + ++ D+ PG + V+ ++ L++ GLA DS+ + + Y
Sbjct: 138 LKGLRYIH---AAGIIHRDLKPGNLAVN--EDCELKILDFGLARQADSEMXGXVVTRWYR 192
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + T+ DI+ G I+ +++TGK+
Sbjct: 193 APEVILNWMRYTQTVDIWSVGCIMAEMITGKT 224
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 102/242 (42%), Gaps = 42/242 (17%)
Query: 209 IYLGYNNLSG-EIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGS 267
IY+GYNNL + + L L+ +YN L G++ P+FG+ L L L N++T
Sbjct: 310 IYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKL-PAFGSEIKLASLNLAYNQIT-E 367
Query: 268 IPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILH----LFSNNFTGKIPS--SLA 321
IP + G Q++NL H N F K S S
Sbjct: 368 IPANFCGFTE--------------------QVENLSFAHNKLKYIPNIFDAKSVSVXSAI 407
Query: 322 SMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFS 381
++ + F P+ K N++ I+LS N ++ K P+ L +GS I
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPF-KGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLX 465
Query: 382 NSLEGKIP-NSLSTCKS-------LRRVRLQNNRLSGELSSEF--TRLPLVYFLDISGND 431
+ +IP NSL L + L+ N+L+ +LS +F T LP + +D+S N
Sbjct: 466 GNXLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS 524
Query: 432 LS 433
S
Sbjct: 525 FS 526
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 511 LSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTL-GRVASLVQVN 569
L KKL L+ NQL G +PA SE+ L L+L+ NQ++ +IP G + ++
Sbjct: 326 LQKXKKLGXLECLYNQLEGKLPAFGSEIK-LASLNLAYNQIT-EIPANFCGFTEQVENLS 383
Query: 570 ISHNHFH 576
+HN
Sbjct: 384 FAHNKLK 390
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 19/195 (9%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 20 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 79
Query: 759 VYEYIEG--KEL--SEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV 814
V+E++ K+ + L + + + + L F H H V+ D+ P +++
Sbjct: 80 VFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLI 136
Query: 815 DGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLIL 867
+ E ++L+ GLA T + + + Y APE K + DI+ G I
Sbjct: 137 N--TEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIF 194
Query: 868 IDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 195 AEMVTRRALFPGDSE 209
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 19/195 (9%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 19 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 78
Query: 759 VYEYIEG--KEL--SEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV 814
V+E++ K+ + L + + + + L F H H V+ D+ P +++
Sbjct: 79 VFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLI 135
Query: 815 DGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLIL 867
+ E ++L+ GLA T + + + Y APE K + DI+ G I
Sbjct: 136 N--TEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIF 193
Query: 868 IDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 194 AEMVTRRALFPGDSE 208
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 17/150 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWE----RRRKVAIGIAKALRFLH 795
HPNI+RL GV K +V E +E L LR + + + GIA +++L
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYL- 163
Query: 796 FHCSPSVVAGDVSPGKVIVDGK------DEPHLRL--SVPGLAYCTDSKSINSSAYVAPE 847
V D++ ++++ D R+ P AY T I + +PE
Sbjct: 164 --SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI-PIRWTSPE 220
Query: 848 TKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ T D++ +G++L ++++ G+ P
Sbjct: 221 AIAYRKFTSASDVWSYGIVLWEVMSYGERP 250
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 10/140 (7%)
Query: 224 IGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDL 283
I L S+ LDL +T P LSNL+ L+L N++T P + GL +L +
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSI 158
Query: 284 SDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSN 343
+ +S P + L L L N + P LAS+P L + L +NQ S P
Sbjct: 159 GNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-- 212
Query: 344 LGKQNNLTVIDLSTNFLTGK 363
L +NL ++ L+ +T +
Sbjct: 213 LANTSNLFIVTLTNQTITNQ 232
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 21/196 (10%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 23 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 82
Query: 759 VYEYIEGKELSE-----VLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
V+E+++ ++L + L + + + + L F H H V+ D+ P ++
Sbjct: 83 VFEHVD-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLL 138
Query: 814 VDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLI 866
++ E ++L+ GLA T + + Y APE K + DI+ G I
Sbjct: 139 IN--TEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCI 196
Query: 867 LIDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 197 FAEMVTRRALFPGDSE 212
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 37.0 bits (84), Expect = 0.049, Method: Composition-based stats.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 14/180 (7%)
Query: 707 NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
N V K + T++ +F + +Q K + H +V+L+ V SE+ Y+V EY+
Sbjct: 40 NGTTRVAIKTLKPGTMSPEAFLQE-AQVMKKLRHEKLVQLYAVV-SEEPIYIVIEYMSKG 97
Query: 767 ELSEVLRNLSWERRR---------KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK 817
L + L+ + R ++A G+A R + H + A ++ G+ +V
Sbjct: 98 SLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVH--RDLRAANILVGENLVCKV 155
Query: 818 DEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ L + Y + + APE T K D++ FG++L +L T G+ P
Sbjct: 156 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 215
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Query: 224 IGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDL 283
I L S+ LDL +T P LSNL+ L+L N++T P + GL +L +
Sbjct: 109 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSI 164
Query: 284 SDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSN 343
+N ++ P + L L L N + P LAS+P L + L NQ S P
Sbjct: 165 GNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP-- 218
Query: 344 LGKQNNLTVIDLS 356
L +NL ++ L+
Sbjct: 219 LANLSNLFIVTLT 231
>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase
Length = 353
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 17/151 (11%)
Query: 736 KLIMHPNIVRLHGV------CRSEKAAYLVYEYIEGKELSEVL-RNLSWERRRKVAIGIA 788
K + H N++ L V R+ YLV +++ +L +++ S E+ + + +
Sbjct: 78 KHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQT-DLQKIMGLKFSEEKIQYLVYQML 136
Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYVA 845
K L+++H S VV D+ PG + V+ ++ L++ GLA D++ + + Y A
Sbjct: 137 KGLKYIH---SAGVVHRDLKPGNLAVN--EDCELKILDFGLARHADAEMTGYVVTRWYRA 191
Query: 846 PETKES-KDITEKGDIYGFGLILIDLLTGKS 875
PE S + DI+ G I+ ++LTGK+
Sbjct: 192 PEVILSWMHYNQTVDIWSVGCIMAEMLTGKT 222
>pdb|4G3F|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase
(nik) Bound To A 2-(aminothiazoly)phenol (cmp2)
Length = 336
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 12/152 (7%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSP 800
P IV L+G R + E +EG L ++++ + + + +AL L + +
Sbjct: 110 PRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTR 169
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS-----------AYVAPETK 849
++ GDV V++ D L G A C + S ++APE
Sbjct: 170 RILHGDVKADNVLLS-SDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVV 228
Query: 850 ESKDITEKGDIYGFGLILIDLLTGKSPADADF 881
K K DI+ +++ +L G P F
Sbjct: 229 MGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYF 260
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 18/158 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEG--KEL--SEVLRNLSWERRRKVAIGIAKAL 791
K + HPNIV+L V +E YLV+E++ K+ + L + + + + L
Sbjct: 57 KELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGL 116
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVA 845
F H H V+ D+ P ++++ E ++L+ GLA T + + + Y A
Sbjct: 117 AFCHSH---RVLHRDLKPQNLLIN--TEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRA 171
Query: 846 PET-KESKDITEKGDIYGFGLILIDLLTGKS--PADAD 880
PE K + DI+ G I +++T ++ P D++
Sbjct: 172 PEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSE 209
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 18/158 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEG--KEL--SEVLRNLSWERRRKVAIGIAKAL 791
K + HPNIV+L V +E YLV+E++ K+ + L + + + + L
Sbjct: 56 KELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGL 115
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVA 845
F H H V+ D+ P ++++ E ++L+ GLA T + + + Y A
Sbjct: 116 AFCHSH---RVLHRDLKPQNLLIN--TEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRA 170
Query: 846 PET-KESKDITEKGDIYGFGLILIDLLTGKS--PADAD 880
PE K + DI+ G I +++T ++ P D++
Sbjct: 171 PEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSE 208
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 37.0 bits (84), Expect = 0.053, Method: Composition-based stats.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 14/180 (7%)
Query: 707 NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
N V K + T++ +F + +Q K + H +V+L+ V SE+ Y+V EY+
Sbjct: 29 NGTTRVAIKTLKPGTMSPEAFLQE-AQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKG 86
Query: 767 ELSEVLRNLSWERRR---------KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK 817
L + L+ + R ++A G+A R + H + A ++ G+ +V
Sbjct: 87 SLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVH--RDLRAANILVGENLVCKV 144
Query: 818 DEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ L + Y + + APE T K D++ FG++L +L T G+ P
Sbjct: 145 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 204
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 37.0 bits (84), Expect = 0.053, Method: Composition-based stats.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 14/180 (7%)
Query: 707 NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
N V K + T++ +F + +Q K + H +V+L+ V SE+ Y+V EY+
Sbjct: 31 NGTTRVAIKTLKPGTMSPEAFLQE-AQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKG 88
Query: 767 ELSEVLRNLSWERRR---------KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK 817
L + L+ + R ++A G+A R + H + A ++ G+ +V
Sbjct: 89 SLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVH--RDLRAANILVGENLVCKV 146
Query: 818 DEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ L + Y + + APE T K D++ FG++L +L T G+ P
Sbjct: 147 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 206
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 120/308 (38%), Gaps = 46/308 (14%)
Query: 340 IPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLR 399
IPS L + + +DLS N +T L +L L+L SN + +S S+ SL
Sbjct: 46 IPSGLTEA--VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103
Query: 400 RVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKW--EMTSLQMLNLAGNNFS 457
+ L N LS SS F L + FL++ GN +GE +T LQ+L + +
Sbjct: 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTF 162
Query: 458 GKL--PDSFGSDQLENLDLSENRFSGTIPRSFGRLSEL------MQLKISRNKLFGDIPE 509
K+ D G LE L++ + P+S + + M+ I ++F D+
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222
Query: 510 ELSSCKKLVSLDLSNNQLSG--------------------------HIPASLSEMPVLGQ 543
+ C +L DL S + L+++ L +
Sbjct: 223 SV-ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE 281
Query: 544 LDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPST---GAFLAINATAVAGNDLCG 600
L+ S NQL R+ SL ++ + N + S P +L N+ G+ C
Sbjct: 282 LEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCS 341
Query: 601 GDSTSGLP 608
G SG P
Sbjct: 342 G---SGKP 346
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 187 LASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP 246
L++N++ ++ + NL+ + L N ++ L SL HLDL YN L+
Sbjct: 59 LSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS 118
Query: 247 SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVS 280
F LS+L +L L N P LG SL S
Sbjct: 119 WFKPLSSLTFLNLLGN------PYKTLGETSLFS 146
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 37.0 bits (84), Expect = 0.053, Method: Composition-based stats.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 14/180 (7%)
Query: 707 NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
N V K + T++ +F + +Q K + H +V+L+ V SE+ Y+V EY+
Sbjct: 40 NGTTRVAIKTLKPGTMSPEAFLQE-AQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKG 97
Query: 767 ELSEVLRNLSWERRR---------KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK 817
L + L+ + R ++A G+A R + H + A ++ G+ +V
Sbjct: 98 SLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVH--RDLRAANILVGENLVCKV 155
Query: 818 DEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ L + Y + + APE T K D++ FG++L +L T G+ P
Sbjct: 156 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 215
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
Query: 123 TGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLV--------GEIPL 174
+ P P L L ILDLSNN ++ + + L++LDL N L G
Sbjct: 476 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 535
Query: 175 SISNITSLQIFTLASNQLIGSIPREIGQ-LRNLKWIYLGYNNLSGEIPKEIGDLTSLNHL 233
+ ++ L I L SN IP E+ + L LK I LG NNL+ + SL L
Sbjct: 536 FLKGLSHLHILNLESNG-FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 594
Query: 234 DLVYNNLTG----QIPPSFGNLSNLRYLF 258
+L N +T P+F NL+ L F
Sbjct: 595 NLQKNLITSVEKKVFGPAFRNLTELDMRF 623
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 124/331 (37%), Gaps = 67/331 (20%)
Query: 228 TSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNY 287
T+L LDL YNNL SF L L Y FL N + S+ GL ++ +L ++
Sbjct: 253 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 312
Query: 288 LSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGE---IPSNL 344
I SLAS+PK+ + FS + +L
Sbjct: 313 TKQSI--------------------------SLASLPKI-------DDFSFQWLKCLEHL 339
Query: 345 GKQNNLTVIDLSTNFLTGKIP-ETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRL 403
++N + + +N TG I + L S S L +N + +S L + L
Sbjct: 340 NMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS-----PLHILNL 393
Query: 404 QNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDS 463
N++S S F+ L + LD+ N++ + Q+W
Sbjct: 394 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR--------------------- 432
Query: 464 FGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKL--FGDIPEELSSCKKLVSLD 521
G + + + LS N++ SF + L +L + R L P + L LD
Sbjct: 433 -GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 491
Query: 522 LSNNQLSGHIPASLSEMPVLGQLDLSENQLS 552
LSNN ++ L + L LDL N L+
Sbjct: 492 LSNNNIANINDDMLEGLEKLEILDLQHNNLA 522
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 132/327 (40%), Gaps = 52/327 (15%)
Query: 180 TSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNN 239
T++ + L NQL + L + +G+N +S P+ L L L+L +N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 240 LTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSG-EIPEEVIQ 298
L+ +F +NL L L N + + K+L++ DLS N LS ++ +V
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 149
Query: 299 LQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTN 358
E+L SNN K+Q L+ S E+ ++ ++L ++LS+N
Sbjct: 150 ENLQELLL--SNN-------------KIQALK------SEEL--DIFANSSLKKLELSSN 186
Query: 359 FLTGKIPETLCDSGSLFKLIL----FSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSS 414
+ P G LF L L SL K+ L+ S+R + L N++LS ++
Sbjct: 187 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT-SIRNLSLSNSQLSTTSNT 245
Query: 415 EFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFG-SDQLENLD 473
F L KW T+L ML+L+ NN + DSF QLE
Sbjct: 246 TFLGL--------------------KW--TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 283
Query: 474 LSENRFSGTIPRSFGRLSELMQLKISR 500
L N S L + L + R
Sbjct: 284 LEYNNIQHLFSHSLHGLFNVRYLNLKR 310
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 507 IPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLV 566
+P++L + + L+L++NQL A+ + L LD+ N +S P+ ++ L
Sbjct: 24 VPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 81
Query: 567 QVNISHNHFHGSLPSTGAF 585
+N+ HN T AF
Sbjct: 82 VLNLQHNELSQLSDKTFAF 100
>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 99/259 (38%), Gaps = 58/259 (22%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------------------NLSWERR 780
H NI+ L G C + Y++ EY L E L+ LS +
Sbjct: 93 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEFSFNPSHNPEEQLSSKDL 152
Query: 781 RKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTD--S 835
A +A+ + +L S + D++ V+V ++ ++++ GLA + D
Sbjct: 153 VSCAYQVARGMEYL---ASKKCIHRDLAARNVLV--TEDNVMKIADFGLARDIHHIDXXK 207
Query: 836 KSINSS---AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWA 891
K+ N ++APE + T + D++ FG++L ++ T G SP
Sbjct: 208 KTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSP--------------- 252
Query: 892 RYCYSDCHLDTWVDPFIRGHV----SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTL 947
Y ++ GH S+ NE+ +M H P+ RP + + L
Sbjct: 253 ---YPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAV---PSQRPTFKQLVEDL 306
Query: 948 ESCFRISSCVSGLKFSSPV 966
+ ++S L S P+
Sbjct: 307 DRIVALTSNQEXLDLSMPL 325
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 19/195 (9%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 23 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 82
Query: 759 VYEYI--EGKEL--SEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV 814
V+E++ + K+ + L + + + + L F H H V+ D+ P +++
Sbjct: 83 VFEFLSMDLKDFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLI 139
Query: 815 DGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLIL 867
+ E ++L+ GLA T + + Y APE K + DI+ G I
Sbjct: 140 N--TEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIF 197
Query: 868 IDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 198 AEMVTRRALFPGDSE 212
>pdb|4G3C|A Chain A, Crystal Structure Of Apo Murine Nf-kappab Inducing Kinase
(nik)
pdb|4G3C|B Chain B, Crystal Structure Of Apo Murine Nf-kappab Inducing Kinase
(nik)
pdb|4G3E|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase
(nik) Bound To A 6-alkynylindoline (cmp1)
pdb|4G3E|B Chain B, Crystal Structure Of Murine Nf-kappab Inducing Kinase
(nik) Bound To A 6-alkynylindoline (cmp1)
Length = 352
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 12/152 (7%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSP 800
P IV L+G R + E +EG L ++++ + + + +AL L + +
Sbjct: 126 PRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTR 185
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS-----------AYVAPETK 849
++ GDV V++ D L G A C + S ++APE
Sbjct: 186 RILHGDVKADNVLLS-SDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVV 244
Query: 850 ESKDITEKGDIYGFGLILIDLLTGKSPADADF 881
K K DI+ +++ +L G P F
Sbjct: 245 MGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYF 276
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
Query: 123 TGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLV--------GEIPL 174
+ P P L L ILDLSNN ++ + + L++LDL N L G
Sbjct: 481 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 540
Query: 175 SISNITSLQIFTLASNQLIGSIPREIGQ-LRNLKWIYLGYNNLSGEIPKEIGDLTSLNHL 233
+ ++ L I L SN IP E+ + L LK I LG NNL+ + SL L
Sbjct: 541 FLKGLSHLHILNLESNG-FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 599
Query: 234 DLVYNNLTG----QIPPSFGNLSNLRYLF 258
+L N +T P+F NL+ L F
Sbjct: 600 NLQKNLITSVEKKVFGPAFRNLTELDMRF 628
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 124/331 (37%), Gaps = 67/331 (20%)
Query: 228 TSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNY 287
T+L LDL YNNL SF L L Y FL N + S+ GL ++ +L ++
Sbjct: 258 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 317
Query: 288 LSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGE---IPSNL 344
I SLAS+PK+ + FS + +L
Sbjct: 318 TKQSI--------------------------SLASLPKI-------DDFSFQWLKCLEHL 344
Query: 345 GKQNNLTVIDLSTNFLTGKIP-ETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRL 403
++N + + +N TG I + L S S L +N + +S L + L
Sbjct: 345 NMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS-----PLHILNL 398
Query: 404 QNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDS 463
N++S S F+ L + LD+ N++ + Q+W
Sbjct: 399 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR--------------------- 437
Query: 464 FGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKL--FGDIPEELSSCKKLVSLD 521
G + + + LS N++ SF + L +L + R L P + L LD
Sbjct: 438 -GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 496
Query: 522 LSNNQLSGHIPASLSEMPVLGQLDLSENQLS 552
LSNN ++ L + L LDL N L+
Sbjct: 497 LSNNNIANINDDMLEGLEKLEILDLQHNNLA 527
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 132/327 (40%), Gaps = 52/327 (15%)
Query: 180 TSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNN 239
T++ + L NQL + L + +G+N +S P+ L L L+L +N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 240 LTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSG-EIPEEVIQ 298
L+ +F +NL L L N + + K+L++ DLS N LS ++ +V
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 154
Query: 299 LQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTN 358
E+L SNN K+Q L+ S E+ ++ ++L ++LS+N
Sbjct: 155 ENLQELLL--SNN-------------KIQALK------SEEL--DIFANSSLKKLELSSN 191
Query: 359 FLTGKIPETLCDSGSLFKLIL----FSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSS 414
+ P G LF L L SL K+ L+ S+R + L N++LS ++
Sbjct: 192 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT-SIRNLSLSNSQLSTTSNT 250
Query: 415 EFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFG-SDQLENLD 473
F L KW T+L ML+L+ NN + DSF QLE
Sbjct: 251 TFLGL--------------------KW--TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 288
Query: 474 LSENRFSGTIPRSFGRLSELMQLKISR 500
L N S L + L + R
Sbjct: 289 LEYNNIQHLFSHSLHGLFNVRYLNLKR 315
>pdb|3ENM|A Chain A, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|B Chain B, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|C Chain C, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|D Chain D, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
Length = 316
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 20/204 (9%)
Query: 691 RGKKGVSSSYKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGV 749
RG GV K R + + VK+I VN+ D+ + + P V +G
Sbjct: 44 RGAYGVVE--KXRHVPSGQIXAVKRIRATVNSQEQKRLLXDLDISXRTVDCPFTVTFYGA 101
Query: 750 CRSEKAAYLVYEYIEG------KELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVV 803
E ++ E + K++ + + + + K+A+ I KAL H H SV+
Sbjct: 102 LFREGDVWICXELXDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALE--HLHSKLSVI 159
Query: 804 AGDVSPGKVIVDGKDE-PHLRLSVPGLAYCTDSKSINS--SAYVAPETKESKDITEKG-- 858
DV P V+++ + + G +K I++ Y APE + + ++ +KG
Sbjct: 160 HRDVKPSNVLINALGQVKXCDFGISGYLVDDVAKDIDAGCKPYXAPE-RINPELNQKGYS 218
Query: 859 ---DIYGFGLILIDLLTGKSPADA 879
DI+ G+ I+L + P D+
Sbjct: 219 VKSDIWSLGITXIELAILRFPYDS 242
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 21/196 (10%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 23 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 82
Query: 759 VYEYIEGKEL-----SEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
V+E++ ++L + L + + + + L F H H V+ D+ P ++
Sbjct: 83 VFEFLH-QDLKTFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLL 138
Query: 814 VDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLI 866
++ E ++L+ GLA T + + Y APE K + DI+ G I
Sbjct: 139 IN--TEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCI 196
Query: 867 LIDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 197 FAEMVTRRALFPGDSE 212
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 36.6 bits (83), Expect = 0.066, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 80/183 (43%), Gaps = 19/183 (10%)
Query: 707 NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
N+ V K + T++ +F + + K + H +VRL+ V E+ Y++ EY+
Sbjct: 35 NNSTKVAVKTLKPGTMSVQAFLEE-ANLMKTLQHDKLVRLYAVVTREEPIYIITEYMAKG 93
Query: 767 ELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPH 821
L + L++ + + + IA+ + ++ + + D+ V+V +
Sbjct: 94 SLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIE---RKNYIHRDLRAANVLV--SESLM 148
Query: 822 LRLSVPGLAYCTDSKSINSS-------AYVAPETKESKDITEKGDIYGFGLILIDLLT-G 873
+++ GLA + + + APE T K D++ FG++L +++T G
Sbjct: 149 CKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGCFTIKSDVWSFGILLYEIVTYG 208
Query: 874 KSP 876
K P
Sbjct: 209 KIP 211
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 21/196 (10%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 20 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 79
Query: 759 VYEYIEGKELSE-----VLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
V+E++ ++L + L + + + + L F H H V+ D+ P ++
Sbjct: 80 VFEFLH-QDLKDFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPENLL 135
Query: 814 VDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLI 866
++ E ++L+ GLA T + + Y APE K + DI+ G I
Sbjct: 136 INT--EGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCI 193
Query: 867 LIDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 194 FAEMVTRRALFPGDSE 209
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 118/488 (24%), Positives = 201/488 (41%), Gaps = 93/488 (19%)
Query: 126 VPIGSLSRLEILDLSNNMLSG-KIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQI 184
+P+ +L LE L L +N +S K P++ + LKVLD N +I I+ +
Sbjct: 120 IPVHNLENLESLYLGSNHISSIKFPKDFPA-RNLKVLDFQNN--------AIHYISREDM 170
Query: 185 FTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQI 244
R + Q NL + G NN+ G E+G S ++ +L
Sbjct: 171 -------------RSLEQAINLSLNFNG-NNVKG---IELGAFDST-----IFQSL---- 204
Query: 245 PPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSF-DLSDNYLSGEIPEEVIQLQNLE 303
+FG NL +F N L S +S+ L +F D+ D +S + + + ++ ++E
Sbjct: 205 --NFGGTPNLSVIF---NGLQNSTTQSLW----LGTFEDIDDEDISSAMLKGLCEM-SVE 254
Query: 304 ILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTN----- 358
L+L + F+ ++ +LQ L L + G +PS + N L + LS N
Sbjct: 255 SLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQL 313
Query: 359 --------------FLTGKIPE------TLCDSGSLFKLILFSNSLEGKIPNSLS--TCK 396
++ G + + L G+L L L N +E SL
Sbjct: 314 CQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLS 373
Query: 397 SLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWE-MTSLQMLNL---- 451
L+ + L +N G S F P + LD++ L + ++ + LQ+LNL
Sbjct: 374 HLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCF 433
Query: 452 ---AGNNFSGKLPDSFGSDQLENLDLSENRFS-GTIPRS--FGRLSELMQLKISRNKLFG 505
+ + LP L +L+L N F GTI ++ + L L +S L
Sbjct: 434 LDTSNQHLLAGLP------VLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLS 487
Query: 506 DIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASL 565
+ S K+ +DLS+N L+ SLS + + L+L+ N ++ P+ L ++
Sbjct: 488 IDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISPRLLPILSQQ 546
Query: 566 VQVNISHN 573
+N+SHN
Sbjct: 547 STINLSHN 554
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 99/377 (26%), Positives = 151/377 (40%), Gaps = 36/377 (9%)
Query: 207 KWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTG 266
+++ +N L + L +L LDL + +F + L L L N L
Sbjct: 33 EFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIF 92
Query: 267 SIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTG-KIPSSLASMPK 325
S+ G KSL L +S V L+NLE L+L SN+ + K P +
Sbjct: 93 MAETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPAR-N 151
Query: 326 LQVLQLWSNQ---FSGEIPSNLGKQNNLTVIDLSTNFLTGKIP--ETLCDSGSLFKLILF 380
L+VL +N S E +L + I+LS NF + E ++F+ + F
Sbjct: 152 LKVLDFQNNAIHYISREDMRSLEQ-----AINLSLNFNGNNVKGIELGAFDSTIFQSLNF 206
Query: 381 SNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQK 440
G PN LS +G +S L L F DI D+S + +
Sbjct: 207 -----GGTPN-LSVI------------FNGLQNSTTQSLWLGTFEDIDDEDISSAMLKGL 248
Query: 441 WEMTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKIS 499
EM S++ LNL + FS +F QL+ LDL+ G +P L+ L +L +S
Sbjct: 249 CEM-SVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLS 306
Query: 500 RNKLFGDIPEELSSCKKLVSLDLSNNQLSGHI-PASLSEMPVLGQLDLSENQL--SGKIP 556
N ++ L L + N H+ L ++ L LDLS N + S
Sbjct: 307 VNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCS 366
Query: 557 QTLGRVASLVQVNISHN 573
L ++ L +N+SHN
Sbjct: 367 LQLKNLSHLQTLNLSHN 383
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 108/438 (24%), Positives = 164/438 (37%), Gaps = 64/438 (14%)
Query: 166 NVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIG 225
N+ + EIP ++ N T F+ N L R +L NL ++ L ++
Sbjct: 18 NLGLSEIPDTLPNTTEFLEFSF--NFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQ 75
Query: 226 DLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSD 285
L+ L L N L S +L++LFL Q ++ + L++L S L
Sbjct: 76 SHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYLGS 135
Query: 286 NYLSG-EIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNL 344
N++S + P++ +NL++L F NN I S M L+ S F+G
Sbjct: 136 NHISSIKFPKD-FPARNLKVLD-FQNNAIHYI--SREDMRSLEQAINLSLNFNG------ 185
Query: 345 GKQNNLTVIDLSTNFLTGKIPETLCDS---GSLFKLILFSNSLEGKIPNSL--STCKSLR 399
NN+ I+L G T+ S G L + N L+ SL T + +
Sbjct: 186 ---NNVKGIEL------GAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLWLGTFEDID 236
Query: 400 RVRLQNNRLSG--ELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFS 457
+ + L G E+S E L F DIS T LQ L+L +
Sbjct: 237 DEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQC--------FTQLQELDLTATHLK 288
Query: 458 GKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRN-----------KLFGD 506
G G + L+ L LS N F S L L I N + G+
Sbjct: 289 GLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGN 348
Query: 507 IPE--------ELSSC--------KKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQ 550
+ E S C L +L+LS+N+ G + E P L LDL+ +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 551 LSGKIPQTLGRVASLVQV 568
L PQ+ + +QV
Sbjct: 409 LHINAPQSPFQNLHFLQV 426
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 36.6 bits (83), Expect = 0.067, Method: Composition-based stats.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 14/180 (7%)
Query: 707 NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
N V K + T++ +F + +Q K + H +V+L+ V SE+ Y+V EY+
Sbjct: 40 NGTTRVAIKTLKPGTMSPEAFLQE-AQVMKKLRHEKLVQLYAVV-SEEPIYIVCEYMSKG 97
Query: 767 ELSEVLRNLSWERRR---------KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK 817
L + L+ + R ++A G+A R + H + A ++ G+ +V
Sbjct: 98 SLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVH--RDLRAANILVGENLVCKV 155
Query: 818 DEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ L + Y + + APE T K D++ FG++L +L T G+ P
Sbjct: 156 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 215
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 21/196 (10%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 24 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 83
Query: 759 VYEYIEGKELSE-----VLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
V+E++ ++L + L + + + + L F H H V+ D+ P ++
Sbjct: 84 VFEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLL 139
Query: 814 VDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLI 866
++ E ++L+ GLA T + + Y APE K + DI+ G I
Sbjct: 140 IN--TEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCI 197
Query: 867 LIDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 198 FAEMVTRRALFPGDSE 213
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 19/195 (9%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 22 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 81
Query: 759 VYEYI--EGKEL--SEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV 814
V+E++ + K+ + L + + + + L F H H V+ D+ P +++
Sbjct: 82 VFEFLSMDLKDFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLI 138
Query: 815 DGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLIL 867
+ E ++L+ GLA T + + Y APE K + DI+ G I
Sbjct: 139 N--TEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIF 196
Query: 868 IDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 197 AEMVTRRALFPGDSE 211
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 21/196 (10%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 23 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 82
Query: 759 VYEYIEGKELSE-----VLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
V+E++ ++L + L + + + + L F H H V+ D+ P ++
Sbjct: 83 VFEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLL 138
Query: 814 VDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLI 866
++ E ++L+ GLA T + + Y APE K + DI+ G I
Sbjct: 139 IN--TEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCI 196
Query: 867 LIDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 197 FAEMVTRRALFPGDSE 212
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
Query: 123 TGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLV--------GEIPL 174
+ P P L L ILDLSNN ++ + + L++LDL N L G
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 530
Query: 175 SISNITSLQIFTLASNQLIGSIPREIGQ-LRNLKWIYLGYNNLSGEIPKEIGDLTSLNHL 233
+ ++ L I L SN IP E+ + L LK I LG NNL+ + SL L
Sbjct: 531 FLKGLSHLHILNLESNG-FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589
Query: 234 DLVYNNLTG----QIPPSFGNLSNLRYLF 258
+L N +T P+F NL+ L F
Sbjct: 590 NLQKNLITSVEKKVFGPAFRNLTELDMRF 618
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 124/331 (37%), Gaps = 67/331 (20%)
Query: 228 TSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNY 287
T+L LDL YNNL SF L L Y FL N + S+ GL ++ +L ++
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307
Query: 288 LSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGE---IPSNL 344
I SLAS+PK+ + FS + +L
Sbjct: 308 TKQSI--------------------------SLASLPKI-------DDFSFQWLKCLEHL 334
Query: 345 GKQNNLTVIDLSTNFLTGKIP-ETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRL 403
++N + + +N TG I + L S S L +N + +S L + L
Sbjct: 335 NMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS-----PLHILNL 388
Query: 404 QNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDS 463
N++S S F+ L + LD+ N++ + Q+W
Sbjct: 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR--------------------- 427
Query: 464 FGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKL--FGDIPEELSSCKKLVSLD 521
G + + + LS N++ SF + L +L + R L P + L LD
Sbjct: 428 -GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486
Query: 522 LSNNQLSGHIPASLSEMPVLGQLDLSENQLS 552
LSNN ++ L + L LDL N L+
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLA 517
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%)
Query: 180 TSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNN 239
T++ + L NQL + L + +G+N +S P+ L L L+L +N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 240 LTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSG 290
L+ +F +NL L L N + + K+L++ DLS N LS
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
>pdb|1NXK|A Chain A, Crystal Structure Of Staurosporine Bound To Map Kap Kinase
2
pdb|1NXK|B Chain B, Crystal Structure Of Staurosporine Bound To Map Kap Kinase
2
pdb|1NXK|C Chain C, Crystal Structure Of Staurosporine Bound To Map Kap Kinase
2
pdb|1NXK|D Chain D, Crystal Structure Of Staurosporine Bound To Map Kap Kinase
2
Length = 400
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 20/159 (12%)
Query: 741 PNIVRLHGVCRS----EKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKAL 791
P+IVR+ V + K +V E ++G EL +++ + ++ I +A+
Sbjct: 115 PHIVRIVDVYENLYAGRKCLLIVXECLDGGELFSRIQDRGDQAFTEREASEIXKSIGEAI 174
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINS-------SAYV 844
++LH S ++ DV P ++ K P+ L + + ++ S NS YV
Sbjct: 175 QYLH---SINIAHRDVKPENLLYTSK-RPNAILKLTDFGFAKETTSHNSLTTPCYTPYYV 230
Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV 883
APE + + D + G+I LL G P ++ G+
Sbjct: 231 APEVLGPEKYDKSCDXWSLGVIXYILLCGYPPFYSNHGL 269
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 21/196 (10%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 20 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 79
Query: 759 VYEYIEGKELSE-----VLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
V+E++ ++L + L + + + + L F H H V+ D+ P ++
Sbjct: 80 VFEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLL 135
Query: 814 VDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLI 866
++ E ++L+ GLA T + + Y APE K + DI+ G I
Sbjct: 136 IN--TEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCI 193
Query: 867 LIDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 194 FAEMVTRRALFPGDSE 209
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 36.6 bits (83), Expect = 0.070, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHF 796
HP++VRL GVC S + G L V N+ + + IAK + +L
Sbjct: 99 HPHLVRLLGVCLSPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKGMMYLE- 157
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT--DSKSINSSA------YVAPET 848
+V D++ V+V K H++++ GLA D K N+ ++A E
Sbjct: 158 --ERRLVHRDLAARNVLV--KSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALEC 213
Query: 849 KESKDITEKGDIYGFGLILIDLLT-GKSPADA 879
+ T + D++ +G+ + +L+T G P D
Sbjct: 214 IHYRKFTHQSDVWSYGVTIWELMTFGGKPYDG 245
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 21/196 (10%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 21 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 80
Query: 759 VYEYIEGKELSE-----VLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
V+E++ ++L + L + + + + L F H H V+ D+ P ++
Sbjct: 81 VFEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLL 136
Query: 814 VDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLI 866
++ E ++L+ GLA T + + Y APE K + DI+ G I
Sbjct: 137 IN--TEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCI 194
Query: 867 LIDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 195 FAEMVTRRALFPGDSE 210
>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
pdb|1H4L|B Chain B, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
Length = 292
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIE---GKELSEVLRNLSWERRRKVAIGIAKALR 792
K + H NIVRLH V S+K LV+E+ + K +L E + + K L
Sbjct: 56 KELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLG 115
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA 830
F H S +V+ D+ P ++++ E L+L+ GLA
Sbjct: 116 FCH---SRNVLHRDLKPQNLLINRNGE--LKLADFGLA 148
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 19/195 (9%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 19 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 78
Query: 759 VYEYIEG--KEL--SEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV 814
V+E++ K+ + L + + + + L F H H V+ D+ P +++
Sbjct: 79 VFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLI 135
Query: 815 DGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLIL 867
+ E ++L+ GLA T + + Y APE K + DI+ G I
Sbjct: 136 N--TEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIF 193
Query: 868 IDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 194 AEMVTRRALFPGDSE 208
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 21/196 (10%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 23 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 82
Query: 759 VYEYIEGKELSE-----VLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
V+E++ ++L + L + + + + L F H H V+ D+ P ++
Sbjct: 83 VFEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLL 138
Query: 814 VDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLI 866
++ E ++L+ GLA T + + Y APE K + DI+ G I
Sbjct: 139 IN--TEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCI 196
Query: 867 LIDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 197 FAEMVTRRALFPGDSE 212
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 21/196 (10%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 22 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 81
Query: 759 VYEYIEGKELSE-----VLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
V+E++ ++L + L + + + + L F H H V+ D+ P ++
Sbjct: 82 VFEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLL 137
Query: 814 VDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLI 866
++ E ++L+ GLA T + + Y APE K + DI+ G I
Sbjct: 138 IN--TEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCI 195
Query: 867 LIDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 196 FAEMVTRRALFPGDSE 211
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 19/195 (9%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 20 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 79
Query: 759 VYEYIEG--KEL--SEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV 814
V+E++ K+ + L + + + + L F H H V+ D+ P +++
Sbjct: 80 VFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLI 136
Query: 815 DGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLIL 867
+ E ++L+ GLA T + + Y APE K + DI+ G I
Sbjct: 137 N--TEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIF 194
Query: 868 IDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 195 AEMVTRRALFPGDSE 209
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 21/196 (10%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 21 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 80
Query: 759 VYEYIEGKELSE-----VLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
V+E++ ++L + L + + + + L F H H V+ D+ P ++
Sbjct: 81 VFEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLL 136
Query: 814 VDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLI 866
++ E ++L+ GLA T + + Y APE K + DI+ G I
Sbjct: 137 IN--TEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCI 194
Query: 867 LIDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 195 FAEMVTRRALFPGDSE 210
>pdb|4G3D|A Chain A, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
pdb|4G3D|B Chain B, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
pdb|4G3D|D Chain D, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
pdb|4G3D|E Chain E, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
Length = 371
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 12/147 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSP 800
P IV L+G R + E +EG L ++++ + + +AL L + S
Sbjct: 145 PRIVPLYGAVREGPWVNIFMELLEGGSLGQLVKEQGCLPEDRALYYLGQALEGLEYLHSR 204
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS-----------AYVAPETK 849
++ GDV V++ D H L G A C + S ++APE
Sbjct: 205 RILHGDVKADNVLLS-SDGSHAALCDFGHAVCLQPDGLGKSLLTGDYIPGTETHMAPEVV 263
Query: 850 ESKDITEKGDIYGFGLILIDLLTGKSP 876
+ K D++ +++ +L G P
Sbjct: 264 LGRSCDAKVDVWSSCCMMLHMLNGCHP 290
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 21/196 (10%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 22 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 81
Query: 759 VYEYIEGKELSE-----VLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
V+E++ ++L + L + + + + L F H H V+ D+ P ++
Sbjct: 82 VFEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLL 137
Query: 814 VDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLI 866
++ E ++L+ GLA T + + Y APE K + DI+ G I
Sbjct: 138 IN--TEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCI 195
Query: 867 LIDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 196 FAEMVTRRALFPGDSE 211
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 36.6 bits (83), Expect = 0.078, Method: Composition-based stats.
Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 28/187 (14%)
Query: 707 NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
N V K + T++ +F + +Q K + H +V+L+ V SE+ Y+V EY+
Sbjct: 37 NGTTRVAIKTLKPGTMSPEAFLQE-AQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMNKG 94
Query: 767 ELSEVLRNLSWERRR---------KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK 817
L + L+ + + R ++A G+A R + H + A ++ G+ +V
Sbjct: 95 SLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERMNYVH--RDLRAANILVGENLV--- 149
Query: 818 DEPHLRLSVPGLAYCTDSKSINSS-------AYVAPETKESKDITEKGDIYGFGLILIDL 870
+++ GLA + + + APE T K D++ FG++L +L
Sbjct: 150 ----CKVADFGLARLIEDNEWTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTEL 205
Query: 871 LT-GKSP 876
T G+ P
Sbjct: 206 TTKGRVP 212
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 19/195 (9%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 20 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 79
Query: 759 VYEYIEG--KEL--SEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV 814
V+E++ K+ + L + + + + L F H H V+ D+ P +++
Sbjct: 80 VFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLI 136
Query: 815 DGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLIL 867
+ E ++L+ GLA T + + Y APE K + DI+ G I
Sbjct: 137 N--TEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIF 194
Query: 868 IDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 195 AEMVTRRALFPGDSE 209
>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1
Reveals A Novel Autoinhibitory Conformation For A Dual
Kinase Protein
Length = 355
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL--RNLSWERRRKVAIG-IAKALRFLHFH 797
P +V LH ++E +L+ +YI G EL L R E ++ +G I AL LH
Sbjct: 119 PFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLH-- 176
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA--YCTDSKS-----INSSAYVAPETKE 850
++ D+ +++D H+ L+ GL+ + D + Y+AP+
Sbjct: 177 -KLGIIYRDIKLENILLDSNG--HVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVR 233
Query: 851 SKDITEKG--DIYGFGLILIDLLTGKSPADAD 880
D D + G+++ +LLTG SP D
Sbjct: 234 GGDSGHDKAVDWWSLGVLMYELLTGASPFTVD 265
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 19/195 (9%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 20 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 79
Query: 759 VYEYIEG--KEL--SEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV 814
V+E++ K+ + L + + + + L F H H V+ D+ P +++
Sbjct: 80 VFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLI 136
Query: 815 DGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLIL 867
+ E ++L+ GLA T + + Y APE K + DI+ G I
Sbjct: 137 N--TEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIF 194
Query: 868 IDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 195 AEMVTRRALFPGDSE 209
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 21/196 (10%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 19 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 78
Query: 759 VYEYIEGKELSE-----VLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
V+E++ ++L + L + + + + L F H H V+ D+ P ++
Sbjct: 79 VFEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLL 134
Query: 814 VDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLI 866
++ E ++L+ GLA T + + Y APE K + DI+ G I
Sbjct: 135 IN--TEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCI 192
Query: 867 LIDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 193 FAEMVTRRALFPGDSE 208
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 21/196 (10%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 21 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 80
Query: 759 VYEYIEGKELSE-----VLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
V+E++ ++L + L + + + + L F H H V+ D+ P ++
Sbjct: 81 VFEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPENLL 136
Query: 814 VDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLI 866
++ E ++L+ GLA T + + Y APE K + DI+ G I
Sbjct: 137 IN--TEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCI 194
Query: 867 LIDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 195 FAEMVTRRALFPGDSE 210
>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
pdb|2BUJ|B Chain B, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
Length = 317
Score = 36.2 bits (82), Expect = 0.085, Method: Composition-based stats.
Identities = 39/179 (21%), Positives = 76/179 (42%), Gaps = 30/179 (16%)
Query: 736 KLIMHPNIVRLHGVCRSEKAA----YLVYEYIE-GKELSEVLR------NLSWERRRKVA 784
+L HPNI+RL C E+ A +L+ + + G +E+ R L+ ++ +
Sbjct: 81 RLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLL 140
Query: 785 IGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEP-------------HLRLSVPGLAY 831
+GI + L +H + D+ P +++ + +P H+ S L
Sbjct: 141 LGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTL 197
Query: 832 CTDSKSINSSAYVAPETKESKD---ITEKGDIYGFGLILIDLLTGKSPADADFGVHESI 887
+ + +Y APE + I E+ D++ G +L ++ G+ P D F +S+
Sbjct: 198 QDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSV 256
>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNG|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNL|A Chain A, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|1UNL|B Chain B, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|3O0G|A Chain A, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
pdb|3O0G|B Chain B, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
Length = 292
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIE---GKELSEVLRNLSWERRRKVAIGIAKALR 792
K + H NIVRLH V S+K LV+E+ + K +L E + + K L
Sbjct: 56 KELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLG 115
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA 830
F H S +V+ D+ P ++++ E L+L+ GLA
Sbjct: 116 FCH---SRNVLHRDLKPQNLLINRNGE--LKLANFGLA 148
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 180 TSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGD-LTSLNHLDLVYN 238
T+ Q+ L NQ+ P L L ++ L N L+ +P + D LT L HL L N
Sbjct: 40 TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTA-LPVGVFDKLTKLTHLALHIN 98
Query: 239 NLTGQIPPSFGNLSNLRYLFLYQN 262
L F NL +L +++L+ N
Sbjct: 99 QLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSI-SNITSLQI 184
VP G + ++L L N ++ P S + L L+L N L +P+ + +T L
Sbjct: 34 VPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTA-LPVGVFDKLTKLTH 92
Query: 185 FTLASNQLIGSIPREI-GQLRNLKWIYLGYNN 215
L NQL SIP + L++L IYL +NN
Sbjct: 93 LALHINQL-KSIPMGVFDNLKSLTHIYL-FNN 122
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 19/195 (9%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 22 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 81
Query: 759 VYEYIEG--KEL--SEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV 814
V+E++ K+ + L + + + + L F H H V+ D+ P +++
Sbjct: 82 VFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPENLLI 138
Query: 815 DGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLIL 867
+ E ++L+ GLA T + + Y APE K + DI+ G I
Sbjct: 139 N--TEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIF 196
Query: 868 IDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 197 AEMVTRRALFPGDSE 211
>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F63|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F64|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F64|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F65|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
pdb|4F65|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
Length = 309
Score = 36.2 bits (82), Expect = 0.088, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 33/165 (20%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------------------NLSWERR 780
H NI+ L G C + Y++ EY L E L+ LS +
Sbjct: 85 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 144
Query: 781 RKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA--------YC 832
A +A+ + +L S + D++ V+V ++ ++++ GLA Y
Sbjct: 145 VSCAYQVARGMEYL---ASKKCIHRDLAARNVLV--TEDNVMKIADFGLARDIHHIDYYK 199
Query: 833 TDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ ++APE + T + D++ FG++L ++ T G SP
Sbjct: 200 KTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSP 244
>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
pdb|3RHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
Length = 306
Score = 36.2 bits (82), Expect = 0.088, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 33/165 (20%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------------------NLSWERR 780
H NI+ L G C + Y++ EY L E L+ LS +
Sbjct: 82 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 141
Query: 781 RKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA--------YC 832
A +A+ + +L S + D++ V+V ++ ++++ GLA Y
Sbjct: 142 VSCAYQVARGMEYL---ASKKCIHRDLAARNVLV--TEDNVMKIADFGLARDIHHIDYYK 196
Query: 833 TDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ ++APE + T + D++ FG++L ++ T G SP
Sbjct: 197 KTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSP 241
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 36.2 bits (82), Expect = 0.088, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 33/165 (20%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------------------NLSWERR 780
H NI+ L G C + Y++ EY L E L+ LS +
Sbjct: 93 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQAREPPGLEYSYNPSHNPEEQLSSKDL 152
Query: 781 RKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA--------YC 832
A +A+ + +L S + D++ V+V ++ ++++ GLA Y
Sbjct: 153 VSCAYQVARGMEYL---ASKKCIHRDLAARNVLV--TEDNVMKIADFGLARDIHHIDYYK 207
Query: 833 TDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ ++APE + T + D++ FG++L ++ T G SP
Sbjct: 208 KTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSP 252
>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3JS2|B Chain B, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3KY2|A Chain A, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
pdb|3KY2|B Chain B, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
Length = 317
Score = 36.2 bits (82), Expect = 0.088, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 33/165 (20%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------------------NLSWERR 780
H NI+ L G C + Y++ EY L E L+ LS +
Sbjct: 93 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 152
Query: 781 RKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA--------YC 832
A +A+ + +L S + D++ V+V ++ ++++ GLA Y
Sbjct: 153 VSCAYQVARGMEYL---ASKKCIHRDLAARNVLV--TEDNVMKIADFGLARDIHHIDYYK 207
Query: 833 TDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ ++APE + T + D++ FG++L ++ T G SP
Sbjct: 208 KTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSP 252
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 36.2 bits (82), Expect = 0.088, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 33/165 (20%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------------------NLSWERR 780
H NI+ L G C + Y++ EY L E L+ LS +
Sbjct: 78 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDL 137
Query: 781 RKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA--------YC 832
A +A+ + +L S + D++ V+V ++ ++++ GLA Y
Sbjct: 138 VSCAYQVARGMEYL---ASKKCIHRDLAARNVLV--TEDNVMKIADFGLARDIHHIDYYK 192
Query: 833 TDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ ++APE + T + D++ FG++L ++ T G SP
Sbjct: 193 KTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSP 237
>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGK|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1AGW|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|1AGW|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|2FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
pdb|2FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
Length = 310
Score = 36.2 bits (82), Expect = 0.088, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 33/165 (20%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------------------NLSWERR 780
H NI+ L G C + Y++ EY L E L+ LS +
Sbjct: 86 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 145
Query: 781 RKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA--------YC 832
A +A+ + +L S + D++ V+V ++ ++++ GLA Y
Sbjct: 146 VSCAYQVARGMEYL---ASKKCIHRDLAARNVLV--TEDNVMKIADFGLARDIHHIDYYK 200
Query: 833 TDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ ++APE + T + D++ FG++L ++ T G SP
Sbjct: 201 KTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSP 245
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 19/195 (9%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 23 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 82
Query: 759 VYEYI--EGKEL--SEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV 814
V+E++ + K+ + L + + + + L F H H V+ D+ P +++
Sbjct: 83 VFEFLSMDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPENLLI 139
Query: 815 DGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLIL 867
+ E ++L+ GLA T + + Y APE K + DI+ G I
Sbjct: 140 N--TEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIF 197
Query: 868 IDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 198 AEMVTRRALFPGDSE 212
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 17/152 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEG---KELSEVLRNLSWERRRKVAIGIAKALRFLHF 796
HP++VRL GVC S + G + + E N+ + + IAK + +L
Sbjct: 76 HPHLVRLLGVCLSPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKGMMYLE- 134
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT--DSKSINSSA------YVAPET 848
+V D++ V+V K H++++ GLA D K N+ ++A E
Sbjct: 135 --ERRLVHRDLAARNVLV--KSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALEC 190
Query: 849 KESKDITEKGDIYGFGLILIDLLT-GKSPADA 879
+ T + D++ +G+ + +L+T G P D
Sbjct: 191 IHYRKFTHQSDVWSYGVTIWELMTFGGKPYDG 222
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 36.2 bits (82), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 19/195 (9%)
Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
YK R+ +KKI +D T S K + HPNIV+L V +E YL
Sbjct: 21 YKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYL 80
Query: 759 VYEYI--EGKEL--SEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV 814
V+E++ + K+ + L + + + + L F H H V+ D+ P +++
Sbjct: 81 VFEFLSMDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPENLLI 137
Query: 815 DGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLIL 867
+ E ++L+ GLA T + + Y APE K + DI+ G I
Sbjct: 138 N--TEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIF 195
Query: 868 IDLLTGKS--PADAD 880
+++T ++ P D++
Sbjct: 196 AEMVTRRALFPGDSE 210
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 11/147 (7%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRF-LHFHC 798
HPNI+ L GV K +V EY+E L L+ + +G+ + + + +
Sbjct: 82 HPNIIHLEGVVTKSKPVMIVTEYMENGSLDTFLKKNDGQFTVIQLVGMLRGISAGMKYLS 141
Query: 799 SPSVVAGDVSPGKVIVDGK---DEPHLRLSV-----PGLAYCTDSKSINSSAYVAPETKE 850
V D++ ++++ LS P AY T I + APE
Sbjct: 142 DMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI-PIRWTAPEAIA 200
Query: 851 SKDITEKGDIYGFGLILIDLLT-GKSP 876
+ T D++ +G+++ ++++ G+ P
Sbjct: 201 FRKFTSASDVWSYGIVMWEVVSYGERP 227
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 153 GSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLR---NLKWI 209
G+ L LDL N L +PL + +L + ++ N+L S+P +G LR L+ +
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 210 YLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGN-LSNLRYLFLYQNKLTGSI 268
YL N L P + L L L N+LT ++P N L NL L L +N L +I
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 269 PKSILG 274
PK G
Sbjct: 188 PKGFFG 193
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 73/175 (41%), Gaps = 33/175 (18%)
Query: 378 ILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIG 437
+L++ SL +P + T +L R L ++ G LP++ LD+S N
Sbjct: 42 LLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG-------TLPVLGTLDLSHN------- 87
Query: 438 EQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLK 497
LQ L L G L LD+S NR + + L EL +L
Sbjct: 88 -------QLQSLPLLGQTLPA----------LTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 498 ISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPAS-LSEMPVLGQLDLSENQL 551
+ N+L P L+ KL L L+NN L+ +PA L+ + L L L EN L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 321 ASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILF 380
++P L L L NQ +P LTV+D+S N LT L G L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 381 SNSLEGKIPNSLSTCKSLRRVRLQNNRLS 409
N L+ P L+ L ++ L NN L+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLT 161
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/259 (20%), Positives = 96/259 (37%), Gaps = 58/259 (22%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------------------NLSWERR 780
H NI+ L G C + Y++ EY L E L+ LS +
Sbjct: 93 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDL 152
Query: 781 RKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA--------YC 832
A +A+ + +L S + D++ V+V ++ ++++ GLA Y
Sbjct: 153 VSCAYQVARGMEYL---ASKKCIHRDLAARNVLV--TEDNVMKIADFGLARDIHHIDYYK 207
Query: 833 TDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWA 891
+ ++APE + T + D++ FG++L ++ T G SP
Sbjct: 208 KTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSP--------------- 252
Query: 892 RYCYSDCHLDTWVDPFIRGHV----SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTL 947
Y ++ GH S+ NE+ +M H P+ RP + + L
Sbjct: 253 ---YPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAV---PSQRPTFKQLVEDL 306
Query: 948 ESCFRISSCVSGLKFSSPV 966
+ ++S L S P+
Sbjct: 307 DRIVALTSNQEYLDLSMPL 325
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 44/187 (23%), Positives = 81/187 (43%), Gaps = 28/187 (14%)
Query: 707 NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
N V K + T++ +F + +Q K + H +V+L+ V SE+ Y+V EY+
Sbjct: 40 NGTTRVAIKTLKPGTMSPEAFLQE-AQVMKKLRHEKLVQLYAVV-SEEPIYIVIEYMSKG 97
Query: 767 ELSEVLRNLSWERRR---------KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK 817
L + L+ + R ++A G+A R + H + A ++ G+ +V
Sbjct: 98 SLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVH--RDLRAANILVGENLV--- 152
Query: 818 DEPHLRLSVPGLAYCTDSKSINSS-------AYVAPETKESKDITEKGDIYGFGLILIDL 870
+++ GLA + + + APE T K D++ FG++L +L
Sbjct: 153 ----CKVADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTEL 208
Query: 871 LT-GKSP 876
T G+ P
Sbjct: 209 TTKGRVP 215
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 80/180 (44%), Gaps = 31/180 (17%)
Query: 137 LDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPL-SISNITSLQ------------ 183
LDLS N LS ++ F+ L++L+L NVL + L S+S + +L
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG 98
Query: 184 --IFTL-ASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNL 240
I TL A+N I + GQ + K IYL N ++ + G + + +LDL N +
Sbjct: 99 PSIETLHAANNNISRVSCSRGQGK--KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156
Query: 241 T----GQIPPSFGNLS--NLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPE 294
++ S L NL+Y F+Y K G + L + DLS N L+ PE
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVV-----FAKLKTLDLSSNKLAFMGPE 209
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 14/180 (7%)
Query: 707 NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
N V K + T++ +F + +Q K + H +V+L+ V SE+ Y+V EY+
Sbjct: 40 NGTTRVAIKTLKPGTMSPEAFLQE-AQVMKKLRHEKLVQLYAVV-SEEPIYIVMEYMSKG 97
Query: 767 ELSEVLRNLSWERRR---------KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK 817
L + L+ + R ++A G+A R + H + A ++ G+ +V
Sbjct: 98 CLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVH--RDLRAANILVGENLVCKV 155
Query: 818 DEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ L + Y + + APE T K D++ FG++L +L T G+ P
Sbjct: 156 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 215
>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
Into Receptor Autoregulation
Length = 343
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLS 776
+PNIV+L GVC K L++EY+ +L+E LR++S
Sbjct: 109 NPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMS 145
>pdb|4DN5|A Chain A, Crystal Structure Of Nf-kb-inducing Kinase (nik)
pdb|4DN5|B Chain B, Crystal Structure Of Nf-kb-inducing Kinase (nik)
Length = 356
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 12/147 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSP 800
P IV L+G R + E +EG L ++++ + + +AL L + S
Sbjct: 126 PRIVPLYGAVREGPWVNIFMELLEGGSLGQLVKEQGCLPEDRALYYLGQALEGLEYLHSR 185
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSI-----------NSSAYVAPETK 849
++ GDV V++ D H L G A C + + ++APE
Sbjct: 186 RILHGDVKADNVLLS-SDGSHAALCDFGHAVCLQPDGLGKDLLTGDYIPGTETHMAPEVV 244
Query: 850 ESKDITEKGDIYGFGLILIDLLTGKSP 876
+ K D++ +++ +L G P
Sbjct: 245 LGRSCDAKVDVWSSCCMMLHMLNGCHP 271
>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
pdb|2JKO|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 17/143 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL--RNLSWERRRKV--AIGIAKALRFLH 795
HP+IV+L GV +E +++ E EL L R S + + A ++ AL +L
Sbjct: 70 HPHIVKLIGVI-TENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLE 128
Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA------YVAPET 848
S V D++ V+V D ++L GL+ Y DS +S ++APE+
Sbjct: 129 ---SKRFVHRDIAARNVLVSATD--CVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPES 183
Query: 849 KESKDITEKGDIYGFGLILIDLL 871
+ T D++ FG+ + ++L
Sbjct: 184 INFRRFTSASDVWMFGVCMWEIL 206
>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain
pdb|3Q4Z|B Chain B, Structure Of Unphosphorylated Pak1 Kinase Domain
Length = 306
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 21/149 (14%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAI--GIAKALRFLHFH 797
+PNIV ++V EY+ G L++V+ + + A+ +AL FLH
Sbjct: 77 NPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLH-- 134
Query: 798 CSPSVVAGDVSPGKVI--VDGKDEPHLRLSVPGLAYCTD--------SKSINSSAYVAPE 847
S V+ ++ ++ +DG + + +C S + + ++APE
Sbjct: 135 -SNQVIHRNIKSDNILLGMDGS------VKLTDFGFCAQITPEQSKRSTMVGTPYWMAPE 187
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
K K DI+ G++ I+++ G+ P
Sbjct: 188 VVTRKAYGPKVDIWSLGIMAIEMIEGEPP 216
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 15/148 (10%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK---ELSEVLRNLSWERRRKVAIGIAKALR 792
K + HPN+V L V R ++ +LV+EY + EL R + + + +A+
Sbjct: 57 KQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVN 116
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESK 852
F H H + + DV P +++ ++L G A S VA S
Sbjct: 117 FCHKH---NCIHRDVKPENILI--TKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSP 171
Query: 853 DI----TEKG---DIYGFGLILIDLLTG 873
++ T+ G D++ G + +LL+G
Sbjct: 172 ELLVGDTQYGPPVDVWAIGCVFAELLSG 199
>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The
Kinase Domain Of Focal Adhesion Kinase With A
Phosphorylated Activation Loop
Length = 276
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 17/143 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL--RNLSWERRRKV--AIGIAKALRFLH 795
HP+IV+L GV +E +++ E EL L R S + + A ++ AL +L
Sbjct: 70 HPHIVKLIGVI-TENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLE 128
Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA------YVAPET 848
S V D++ V+V D ++L GL+ Y DS +S ++APE+
Sbjct: 129 ---SKRFVHRDIAARNVLVSSND--CVKLGDFGLSRYMEDSTXXKASKGKLPIKWMAPES 183
Query: 849 KESKDITEKGDIYGFGLILIDLL 871
+ T D++ FG+ + ++L
Sbjct: 184 INFRRFTSASDVWMFGVCMWEIL 206
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 33/175 (18%)
Query: 378 ILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIG 437
+L++ SL +P + T +L R L ++ G LP++ LD+S N
Sbjct: 42 LLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG-------TLPVLGTLDLSHN------- 87
Query: 438 EQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLK 497
LQ L L G L LD+S NR + + L EL +L
Sbjct: 88 -------QLQSLPLLGQTLPA----------LTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 498 ISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPAS-LSEMPVLGQLDLSENQL 551
+ N+L P L+ KL L L+NNQL+ +PA L+ + L L L EN L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 153 GSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLR---NLKWI 209
G+ L LDL N L +PL + +L + ++ N+L S+P +G LR L+ +
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 210 YLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGN-LSNLRYLFLYQNKLTGSI 268
YL N L P + L L L N LT ++P N L NL L L +N L +I
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 269 PKSILG 274
PK G
Sbjct: 188 PKGFFG 193
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 15/113 (13%)
Query: 440 KWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKIS 499
+ E+T LQ+ G LP L LDLS N+ ++P L L L +S
Sbjct: 64 RCELTKLQV--------DGTLP------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108
Query: 500 RNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLS 552
N+L L +L L L N+L P L+ P L +L L+ NQL+
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 321 ASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILF 380
++P L L L NQ +P LTV+D+S N LT L G L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 381 SNSLEGKIPNSLSTCKSLRRVRLQNNRLS 409
N L+ P L+ L ++ L NN+L+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 249 GNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLF 308
G L L L L N+L S+P L +L D+S N L+ + L L+ L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 309 SNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNL 344
N P L PKL+ L L +NQ + E+P+ L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGL 167
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 14/180 (7%)
Query: 707 NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
N V K + T++ +F + +Q K + H +V+L+ V SE+ Y+V EY+
Sbjct: 40 NGTTRVAIKTLKPGTMSPEAFLQE-AQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKG 97
Query: 767 ELSEVLRNLSWERRR---------KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK 817
L + L+ + R ++A G+A R + H + A ++ G+ +V
Sbjct: 98 CLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVH--RDLRAANILVGENLVCKV 155
Query: 818 DEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ L + Y + + APE T K D++ FG++L +L T G+ P
Sbjct: 156 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 215
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 33/175 (18%)
Query: 378 ILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIG 437
+L++ SL +P + T +L R L ++ G LP++ LD+S N
Sbjct: 42 LLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG-------TLPVLGTLDLSHN------- 87
Query: 438 EQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLK 497
LQ L L G L LD+S NR + + L EL +L
Sbjct: 88 -------QLQSLPLLGQTLPA----------LTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 498 ISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPAS-LSEMPVLGQLDLSENQL 551
+ N+L P L+ KL L L+NNQL+ +PA L+ + L L L EN L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 153 GSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLR---NLKWI 209
G+ L LDL N L +PL + +L + ++ N+L S+P +G LR L+ +
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 210 YLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGN-LSNLRYLFLYQNKLTGSI 268
YL N L P + L L L N LT ++P N L NL L L +N L +I
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 269 PKSILG 274
PK G
Sbjct: 188 PKGFFG 193
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 321 ASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILF 380
++P L L L NQ +P LTV+D+S N LT L G L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 381 SNSLEGKIPNSLSTCKSLRRVRLQNNRLS 409
N L+ P L+ L ++ L NN+L+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 15/113 (13%)
Query: 440 KWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKIS 499
+ E+T LQ+ G LP L LDLS N+ ++P L L L +S
Sbjct: 64 RCELTKLQV--------DGTLP------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108
Query: 500 RNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLS 552
N+L L +L L L N+L P L+ P L +L L+ NQL+
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 249 GNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLF 308
G L L L L N+L S+P L +L D+S N L+ + L L+ L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 309 SNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNL 344
N P L PKL+ L L +NQ + E+P+ L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGL 167
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFH 797
H N+V ++ ++V E++EG L++++ + ++ E+ V + + +AL LH
Sbjct: 130 HENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLH-- 187
Query: 798 CSPSVVAGDVSPGKVIV--DGKDEPHLRLSVPGLAYCTD-SKS-------INSSAYVAPE 847
+ V+ D+ +++ DG R+ + +C SK + + ++APE
Sbjct: 188 -AQGVIHRDIKSDSILLTHDG------RVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPE 240
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
+ DI+ G+++I+++ G+ P
Sbjct: 241 LISRLPYGPEVDIWSLGIMVIEMVDGEPP 269
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 43/210 (20%), Positives = 87/210 (41%), Gaps = 31/210 (14%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
GK ++ Y + + + VK + D + F + L H +IV+ +GVC
Sbjct: 27 GKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNL-QHEHIVKFYGVCV 85
Query: 752 SEKAAYLVYEYIEGKELSEVLR----------------NLSWERRRKVAIGIAKALRFLH 795
+V+EY++ +L++ LR L+ + +A IA + +L
Sbjct: 86 EGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYL- 144
Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSA-----YVAPE 847
S V D++ +V + +++ G++ Y TD + ++ PE
Sbjct: 145 --ASQHFVHRDLATRNCLVG--ENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPE 200
Query: 848 TKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ + T + D++ G++L ++ T GK P
Sbjct: 201 SIMYRKFTTESDVWSLGVVLWEIFTYGKQP 230
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 33/175 (18%)
Query: 378 ILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIG 437
+L++ SL +P + T +L R L ++ G LP++ LD+S N
Sbjct: 42 LLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG-------TLPVLGTLDLSHN------- 87
Query: 438 EQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLK 497
LQ L L G L LD+S NR + + L EL +L
Sbjct: 88 -------QLQSLPLLGQTLPA----------LTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 498 ISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPAS-LSEMPVLGQLDLSENQL 551
+ N+L P L+ KL L L+NNQL+ +PA L+ + L L L EN L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 153 GSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLR---NLKWI 209
G+ L LDL N L +PL + +L + ++ N+L S+P +G LR L+ +
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 210 YLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGN-LSNLRYLFLYQNKLTGSI 268
YL N L P + L L L N LT ++P N L NL L L +N L +I
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 269 PKSILG 274
PK G
Sbjct: 188 PKGFFG 193
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 15/113 (13%)
Query: 440 KWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKIS 499
+ E+T LQ+ G LP L LDLS N+ ++P L L L +S
Sbjct: 64 RCELTKLQV--------DGTLP------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108
Query: 500 RNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLS 552
N+L L +L L L N+L P L+ P L +L L+ NQL+
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 321 ASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILF 380
++P L L L NQ +P LTV+D+S N LT L G L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 381 SNSLEGKIPNSLSTCKSLRRVRLQNNRLS 409
N L+ P L+ L ++ L NN+L+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 249 GNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLF 308
G L L L L N+L S+P L +L D+S N L+ + L L+ L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 309 SNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNL 344
N P L PKL+ L L +NQ + E+P+ L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGL 167
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 33/175 (18%)
Query: 378 ILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIG 437
+L++ SL +P + T +L R L ++ G L P++ LD+S N
Sbjct: 42 LLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL-------PVLGTLDLSHN------- 87
Query: 438 EQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLK 497
LQ L L G L LD+S NR + + L EL +L
Sbjct: 88 -------QLQSLPLLGQTLPA----------LTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 498 ISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPAS-LSEMPVLGQLDLSENQL 551
+ N+L P L+ KL L L+NNQL+ +PA L+ + L L L EN L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 153 GSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLR---NLKWI 209
G+ L LDL N L +PL + +L + ++ N+L S+P +G LR L+ +
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQEL 129
Query: 210 YLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGN-LSNLRYLFLYQNKLTGSI 268
YL N L P + L L L N LT ++P N L NL L L +N L +I
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 269 PKSILG 274
PK G
Sbjct: 188 PKGFFG 193
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 15/113 (13%)
Query: 440 KWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKIS 499
+ E+T LQ+ G LP L LDLS N+ ++P L L L +S
Sbjct: 64 RCELTKLQV--------DGTLP------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108
Query: 500 RNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLS 552
N+L L +L L L N+L P L+ P L +L L+ NQL+
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 321 ASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILF 380
++P L L L NQ +P LTV+D+S N LT L G L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 381 SNSLEGKIPNSLSTCKSLRRVRLQNNRLS 409
N L+ P L+ L ++ L NN+L+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 249 GNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLF 308
G L L L L N+L S+P L +L D+S N L+ + L L+ L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 309 SNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNL 344
N P L PKL+ L L +NQ + E+P+ L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGL 167
>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
pdb|2I6L|B Chain B, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
Length = 320
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 755 AAYLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKV 812
+ Y+V EY+E +L+ VL L E R + + L+++H S +V+ D+ P +
Sbjct: 96 SVYIVQEYME-TDLANVLEQGPLLEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANL 151
Query: 813 IVDGKDEPHLRLSVPGLAYCTD---------SKSINSSAYVAPETKES-KDITEKGDIYG 862
++ +D L++ GLA D S+ + + Y +P S + T+ D++
Sbjct: 152 FINTEDLV-LKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWA 210
Query: 863 FGLILIDLLTGKS 875
G I ++LTGK+
Sbjct: 211 AGCIFAEMLTGKT 223
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 30/190 (15%)
Query: 712 VVKKIIDV---NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL 768
V ++ID+ N +F +V + + H N+V G C S ++ +G+ L
Sbjct: 58 VAIRLIDIERDNEDQLKAFKREVMAY-RQTRHENVVLFMGACMSPPHLAIITSLCKGRTL 116
Query: 769 SEVLRN----LSWERRRKVAIGIAKALRFLH--------------FHCSPSVVAGD---V 807
V+R+ L + R++A I K + +LH F+ + VV D
Sbjct: 117 YSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYDNGKVVITDFGLF 176
Query: 808 SPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESK-DITEKGDIYGFGLI 866
S V+ G+ E LR+ L C + I ++P+T+E K ++ D++ G I
Sbjct: 177 SISGVLQAGRREDKLRIQNGWL--CHLAPEIIRQ--LSPDTEEDKLPFSKHSDVFALGTI 232
Query: 867 LIDLLTGKSP 876
+L + P
Sbjct: 233 WYELHAREWP 242
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 44/220 (20%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAI--GIAKALRFLHFHC 798
P + + +G + +++ EY+ G ++L + + I I K L +LH
Sbjct: 85 PYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLH--- 141
Query: 799 SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSK-----SINSSAYVAPETKESK 852
S + D+ V++ E ++L+ G+A TD++ + + ++APE +
Sbjct: 142 SEKKIHRDIKAANVLLSEHGE--VKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQS 199
Query: 853 DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCH-------LDTWVD 905
K DI+ G+ I+L G+ P +S+ H +
Sbjct: 200 AYDSKADIWSLGITAIELARGEPP------------------HSELHPMKVLFLIPKNNP 241
Query: 906 PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK 945
P + G+ S E VE C +P+ RP A ++ K
Sbjct: 242 PTLEGNYSKPLKEFVEA------CLNKEPSFRPTAKELLK 275
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 21/153 (13%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLH 795
HPNI+RL GV + ++ E++E L LR + + + GIA +R+L
Sbjct: 74 HPNIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYL- 132
Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS-----------AYV 844
S V D++ ++V+ ++S GL+ + S + + +
Sbjct: 133 --AEMSYVHRDLAARNILVNSN--LVCKVSDFGLSRFLEENSSDPTYTSSLGGKIPIRWT 188
Query: 845 APETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
APE + T D + +G+++ ++++ G+ P
Sbjct: 189 APEAIAFRKFTSASDAWSYGIVMWEVMSFGERP 221
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 21/153 (13%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLH 795
HPNI+RL GV + ++ E++E L LR + + + GIA +R+L
Sbjct: 76 HPNIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYL- 134
Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA-----------YV 844
S V D++ ++V+ ++S GL+ + S + + +
Sbjct: 135 --AEMSYVHRDLAARNILVNSN--LVCKVSDFGLSRFLEENSSDPTETSSLGGKIPIRWT 190
Query: 845 APETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
APE + T D + +G+++ ++++ G+ P
Sbjct: 191 APEAIAFRKFTSASDAWSYGIVMWEVMSFGERP 223
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 31/180 (17%)
Query: 137 LDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPL-SISNITSLQ------------ 183
LDLS N LS ++ F+ L++L+L NVL + L S+S + +L
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG 98
Query: 184 --IFTL-ASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNL 240
I TL A+N I + GQ + K IYL N ++ + G + + +LDL N +
Sbjct: 99 PSIETLHAANNNISRVSCSRGQGK--KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156
Query: 241 T----GQIPPSFGNLS--NLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPE 294
++ S L NL+Y F+Y K + L + DLS N L+ PE
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIYD-------VKGQVVFAKLKTLDLSSNKLAFMGPE 209
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 349 NLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRL 408
NL +DLS+N L D +L L+L++N + N+ L+++ L N++
Sbjct: 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
Query: 409 SG---ELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQML 449
S EL + +LP + LD+S N L +K +T LQ L
Sbjct: 149 SRFPVELIKDGNKLPKLMLLDLSSNKL------KKLPLTDLQKL 186
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 13/161 (8%)
Query: 388 IPNSLSTCKSLRRVRLQNNRLSGELSSEFT--RLPLVYFLDISGNDLSGRIGEQKWEMTS 445
+P SL + +L + L +N LS L +E+T RL ++ L +S N L+ E + +
Sbjct: 33 VPQSLPSYTAL--LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89
Query: 446 LQMLNLAGNNFSGKLPDSFGSD--QLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKL 503
L+ L+L+ N+ L + SD LE L L N +F +++L +L +S+N++
Sbjct: 90 LRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
Query: 504 FGDIPEEL----SSCKKLVSLDLSNNQLSGHIPASLSEMPV 540
P EL + KL+ LDLS+N+L L ++P
Sbjct: 149 -SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 131 LSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASN 190
L+ L L LS+N L+ E L+ LDL N L S++ +L++ L +N
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122
Query: 191 QLIGSIPREIGQLRNLKWIYLGYNNLSG---EIPKEIGDLTSLNHLDLVYNNL 240
++ + L+ +YL N +S E+ K+ L L LDL N L
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
Query: 202 QLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQ 261
+L NL + L +N+L+ + + +L +LDL N+L F +L L L LY
Sbjct: 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121
Query: 262 NKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVI----QLQNLEILHLFSNNFTGKIP 317
N + + + L LS N +S P E+I +L L +L L SN K+P
Sbjct: 122 NHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKL-KKLP 179
Query: 318 SSLASMPKLQVLQLW 332
+ LQ L W
Sbjct: 180 -----LTDLQKLPAW 189
>pdb|2H34|A Chain A, Apoenzyme Crystal Structure Of The Tuberculosis
SerineTHREONINE Kinase, Pkne
pdb|2H34|B Chain B, Apoenzyme Crystal Structure Of The Tuberculosis
SerineTHREONINE Kinase, Pkne
Length = 309
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 9/150 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLS-WERRRKVAIGIAKALRFLHF 796
+ P++V +H + Y+ I G +L+ LR R VAI + + L
Sbjct: 91 LQEPHVVPIHDFGEIDGQLYVDXRLINGVDLAAXLRRQGPLAPPRAVAI-VRQIGSALDA 149
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK------SINSSAYVAPETKE 850
+ DV P ++V D +L + + TD K ++ + Y APE
Sbjct: 150 AHAAGATHRDVKPENILVSADDFAYL-VDFGIASATTDEKLTQLGNTVGTLYYXAPERFS 208
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
T + DIY +L + LTG P D
Sbjct: 209 ESHATYRADIYALTCVLYECLTGSPPYQGD 238
>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
Length = 382
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 33/165 (20%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------------------NLSWERR 780
H NI+ L G C + Y++ EY L E L+ LS +
Sbjct: 134 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 193
Query: 781 RKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA--------YC 832
A +A+ + +L S + D++ V+V ++ ++++ GLA Y
Sbjct: 194 VSCAYQVARGMEYL---ASKKCIHRDLAARNVLV--TEDNVMKIADFGLARDIHHIDYYK 248
Query: 833 TDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
+ ++APE + T + D++ FG++L ++ T G SP
Sbjct: 249 KTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSP 293
>pdb|3B2T|A Chain A, Structure Of Phosphotransferase
pdb|3B2T|B Chain B, Structure Of Phosphotransferase
Length = 311
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 33/165 (20%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------------------NLSWERR 780
H NI+ L G C + Y++ EY L E LR ++++
Sbjct: 87 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 146
Query: 781 RKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS----- 835
+A+ + +L S + D++ V+V + ++++ GLA ++
Sbjct: 147 VSCTYQLARGMEYL---ASQKCIHRDLTARNVLV--TENNVMKIADFGLARDINNIDYYK 201
Query: 836 KSINSS---AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
K+ N ++APE + T + D++ FG+++ ++ T G SP
Sbjct: 202 KTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSP 246
>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
pdb|4EBV|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
Length = 304
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRF------ 793
HP+IV+L GV +E +++ E EL L+ RK ++ +A + +
Sbjct: 98 HPHIVKLIGVI-TENPVWIIMELCTLGELRSFLQV------RKYSLDLASLILYAYQLST 150
Query: 794 -LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA------YVA 845
L + S V D++ V+V D ++L GL+ Y DS +S ++A
Sbjct: 151 ALAYLESKRFVHRDIAARNVLVSSND--CVKLGDFGLSRYMEDSTYYKASKGKLPIKWMA 208
Query: 846 PETKESKDITEKGDIYGFGLILIDLL 871
PE+ + T D++ FG+ + ++L
Sbjct: 209 PESINFRRFTSASDVWMFGVCMWEIL 234
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
pdb|1OEC|A Chain A, Fgfr2 Kinase Domain
Length = 316
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 33/165 (20%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------------------NLSWERR 780
H NI+ L G C + Y++ EY L E LR ++++
Sbjct: 92 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 151
Query: 781 RKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS----- 835
+A+ + +L S + D++ V+V + ++++ GLA ++
Sbjct: 152 VSCTYQLARGMEYL---ASQKCIHRDLAARNVLV--TENNVMKIADFGLARDINNIDYYK 206
Query: 836 KSINSS---AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
K+ N ++APE + T + D++ FG+++ ++ T G SP
Sbjct: 207 KTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSP 251
>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
pdb|3RI1|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
Length = 313
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 33/165 (20%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------------------NLSWERR 780
H NI+ L G C + Y++ EY L E LR ++++
Sbjct: 89 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 148
Query: 781 RKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS----- 835
+A+ + +L S + D++ V+V + ++++ GLA ++
Sbjct: 149 VSCTYQLARGMEYL---ASQKCIHRDLAARNVLV--TENNVMKIADFGLARDINNIDYYK 203
Query: 836 KSINSS---AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
K+ N ++APE + T + D++ FG+++ ++ T G SP
Sbjct: 204 KTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSP 248
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 70/149 (46%), Gaps = 21/149 (14%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFH 797
H N+V ++ ++V E++EG L++++ + ++ E+ V + + +AL LH
Sbjct: 207 HENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQ 266
Query: 798 CSPSVVAGDVSPGKVIV--DGKDEPHLRLSVPGLAYCTD-SKS-------INSSAYVAPE 847
V+ D+ +++ DG R+ + +C SK + + ++APE
Sbjct: 267 ---GVIHRDIKSDSILLTHDG------RVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPE 317
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
+ DI+ G+++I+++ G+ P
Sbjct: 318 LISRLPYGPEVDIWSLGIMVIEMVDGEPP 346
>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|B Chain B, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|D Chain D, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
Length = 294
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 15/166 (9%)
Query: 727 FWPDVSQFGKLIM------HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERR 780
F DV +F + I HPNI+RL+ YLV E G EL E + + R
Sbjct: 63 FVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVHKRVFRE 122
Query: 781 RKVAIGIAKALRFLHFHCSPSVVAGDVSPGK--VIVDGKDEPHLRLSVPGLAYCTD---- 834
A + L + + +V D+ P + D D P L+L GLA
Sbjct: 123 SDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSP-LKLIDFGLAARFKPGKM 181
Query: 835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADA 879
+ + YV+P+ E E D + G+++ LL G P A
Sbjct: 182 MRTKVGTPYYVSPQVLEGLYGPE-CDEWSAGVMMYVLLCGYPPFSA 226
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 83/220 (37%), Gaps = 44/220 (20%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAI--GIAKALRFLHFHC 798
P I R G +++ EY+ G ++L+ E I I K L +LH
Sbjct: 77 PYITRYFGSYLKSTKLWIIMEYLGGGSALDLLKPGPLEETYIATILREILKGLDYLH--- 133
Query: 799 SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSK-----SINSSAYVAPETKESK 852
S + D+ V++ ++ ++L+ G+A TD++ + + ++APE +
Sbjct: 134 SERKIHRDIKAANVLLS--EQGDVKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQS 191
Query: 853 DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCH-------LDTWVD 905
K DI+ G+ I+L G+ P SD H +
Sbjct: 192 AYDFKADIWSLGITAIELAKGEPPN------------------SDLHPMRVLFLIPKNSP 233
Query: 906 PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK 945
P + G S E VE C DP RP A ++ K
Sbjct: 234 PTLEGQHSKPFKEFVEA------CLNKDPRFRPTAKELLK 267
>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3EYH|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 290
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 20/150 (13%)
Query: 738 IMHPNIVRLHGVCRSE--KAAYLVYEYIEGKELSEVL----RNLSWERRRKVAIGIAKAL 791
+ H NIV+ G+C + L+ E++ L E L ++ +++ K A+ I K +
Sbjct: 68 LYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGM 127
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA--------- 842
+L S V D++ V+V+ E +++ GL ++ +
Sbjct: 128 DYLG---SRQYVHRDLAARNVLVES--EHQVKIGDFGLTKAIETDKEXXTVKDDRDSPVF 182
Query: 843 YVAPETKESKDITEKGDIYGFGLILIDLLT 872
+ APE D++ FG+ L +LLT
Sbjct: 183 WYAPECLMQSKFYIASDVWSFGVTLHELLT 212
>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRF------ 793
HP+IV+L GV +E +++ E EL L+ RK ++ +A + +
Sbjct: 70 HPHIVKLIGVI-TENPVWIIMELCTLGELRSFLQV------RKYSLDLASLILYAYQLST 122
Query: 794 -LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA------YVA 845
L + S V D++ V+V D ++L GL+ Y DS +S ++A
Sbjct: 123 ALAYLESKRFVHRDIAARNVLVSSND--CVKLGDFGLSRYMEDSTYYKASKGKLPIKWMA 180
Query: 846 PETKESKDITEKGDIYGFGLILIDLL 871
PE+ + T D++ FG+ + ++L
Sbjct: 181 PESINFRRFTSASDVWMFGVCMWEIL 206
>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And
Kinase Domains Of Focal Adhesion Kinase.
pdb|2JKQ|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRF------ 793
HP+IV+L GV +E +++ E EL L+ RK ++ +A + +
Sbjct: 70 HPHIVKLIGVI-TENPVWIIMELCTLGELRSFLQV------RKYSLDLASLILYAYQLST 122
Query: 794 -LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA------YVA 845
L + S V D++ V+V D ++L GL+ Y DS +S ++A
Sbjct: 123 ALAYLESKRFVHRDIAARNVLVSSND--CVKLGDFGLSRYMEDSTYYKASKGKLPIKWMA 180
Query: 846 PETKESKDITEKGDIYGFGLILIDLL 871
PE+ + T D++ FG+ + ++L
Sbjct: 181 PESINFRRFTSASDVWMFGVCMWEIL 206
>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains
Trapped In Trans-Phosphorylation Reaction
Length = 334
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 51/253 (20%), Positives = 96/253 (37%), Gaps = 46/253 (18%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------NLSWERRR--------KVA 784
H NI+ L G C + Y++ EY L E LR S++ R K
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 159
Query: 785 IGIAKAL-RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----KSI 838
+ L R + + S + D++ V+V + ++++ GLA ++ K+
Sbjct: 160 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTENN--VMKIADFGLARDINNIDXXKKTT 217
Query: 839 NSS---AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYC 894
N ++APE + T + D++ FG+++ ++ T G SP
Sbjct: 218 NGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSP------------------ 259
Query: 895 YSDCHLDTWVDPFIRGH-VSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI 953
Y ++ GH + N E+ + C P+ RP + + L+ +
Sbjct: 260 YPGIPVEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTL 319
Query: 954 SSCVSGLKFSSPV 966
++ L S P+
Sbjct: 320 TTNEEYLDLSQPL 332
>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydroquinolinone
pdb|1R3C|A Chain A, The Structure Of P38alpha C162s Mutant
pdb|2I0H|A Chain A, The Structure Of P38alpha In Complex With An
Arylpyridazinone
pdb|3GC7|A Chain A, The Structure Of P38alpha In Complex With A
Dihydroquinazolinone
pdb|3NEW|A Chain A, P38-Alpha Complexed With Compound 10
Length = 366
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 82 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 140
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 141 LRGLKYIH---SADIIHRDLKPSNLAVNEDSE--LKILDFGLARHTDDEMTGYVATRWYR 195
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 196 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 227
>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase
Length = 360
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 76 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 134
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 135 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGYVATRWYR 189
Query: 845 APETK-ESKDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 190 APEIMLNAMHYNQTVDIWSVGCIMAELLTGRT 221
>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains.
pdb|2J0K|B Chain B, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 17/143 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL--RNLSWERRRKV--AIGIAKALRFLH 795
HP+IV+L GV +E +++ E EL L R S + + A ++ AL +L
Sbjct: 450 HPHIVKLIGVI-TENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLE 508
Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA------YVAPET 848
S V D++ V+V D ++L GL+ Y DS +S ++APE+
Sbjct: 509 ---SKRFVHRDIAARNVLVSATD--CVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPES 563
Query: 849 KESKDITEKGDIYGFGLILIDLL 871
+ T D++ FG+ + ++L
Sbjct: 564 INFRRFTSASDVWMFGVCMWEIL 586
>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak)
pdb|4I4F|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With An Allosteric Binding Pyrazolobenzothiazine
Compound
Length = 281
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRF------ 793
HP+IV+L GV +E +++ E EL L+ RK ++ +A + +
Sbjct: 75 HPHIVKLIGVI-TENPVWIIMELCTLGELRSFLQV------RKYSLDLASLILYAYQLST 127
Query: 794 -LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA------YVA 845
L + S V D++ V+V D ++L GL+ Y DS +S ++A
Sbjct: 128 ALAYLESKRFVHRDIAARNVLVSSND--CVKLGDFGLSRYMEDSTYYKASKGKLPIKWMA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLL 871
PE+ + T D++ FG+ + ++L
Sbjct: 186 PESINFRRFTSASDVWMFGVCMWEIL 211
>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195
Length = 365
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 81 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 139
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 140 LRGLKYIH---SADIIHRDLKPSNLAVNEDXE--LKILDFGLARHTDDEMTGYVATRWYR 194
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 195 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 226
>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk
Docking Peptide
Length = 362
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 78 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 136
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 137 LRGLKYIH---SADIIHRDLKPSNLAVNEDSE--LKILDFGLARHTDDEMTGYVATRWYR 191
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 192 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 223
>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium
Dependent Protein Kinase Cgd7_1840 In Presence Of
Indirubin E804
Length = 277
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 15/166 (9%)
Query: 727 FWPDVSQFGKLIM------HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERR 780
F DV +F + I HPNI+RL+ YLV E G EL E + + R
Sbjct: 46 FVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVHKRVFRE 105
Query: 781 RKVAIGIAKALRFLHFHCSPSVVAGDVSPGK--VIVDGKDEPHLRLSVPGLAYCTD---- 834
A + L + + +V D+ P + D D P L+L GLA
Sbjct: 106 SDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSP-LKLIDFGLAARFKPGKM 164
Query: 835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADA 879
+ + YV+P+ E E D + G+++ LL G P A
Sbjct: 165 MRTKVGTPYYVSPQVLEGLYGPE-CDEWSAGVMMYVLLCGYPPFSA 209
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 44/220 (20%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAI--GIAKALRFLHFHC 798
P + + +G + +++ EY+ G ++L + + I I K L +LH
Sbjct: 80 PYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLH--- 136
Query: 799 SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSK-----SINSSAYVAPETKESK 852
S + D+ V++ E ++L+ G+A TD++ + + ++APE +
Sbjct: 137 SEKKIHRDIKAANVLLSEHGE--VKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQS 194
Query: 853 DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCH-------LDTWVD 905
K DI+ G+ I+L G+ P +S+ H +
Sbjct: 195 AYDSKADIWSLGITAIELARGEPP------------------HSELHPMKVLFLIPKNNP 236
Query: 906 PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK 945
P + G+ S E VE C +P+ RP A ++ K
Sbjct: 237 PTLEGNYSKPLKEFVEA------CLNKEPSFRPTAKELLK 270
>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf
Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp
Analog And Substrate Peptide
Length = 334
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 48/256 (18%), Positives = 96/256 (37%), Gaps = 52/256 (20%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------------------NLSWERR 780
H NI+ L G C + Y++ EY L E LR ++++
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEXSYDINRVPEEQMTFKDL 159
Query: 781 RKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS----- 835
+A+ + +L S + D++ V+V + ++++ GLA ++
Sbjct: 160 VSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENN--VMKIADFGLARDINNIDXXK 214
Query: 836 KSINSS---AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWA 891
K+ N ++APE + T + D++ FG+++ ++ T G SP
Sbjct: 215 KTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSP--------------- 259
Query: 892 RYCYSDCHLDTWVDPFIRGH-VSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESC 950
Y ++ GH + N E+ + C P+ RP + + L+
Sbjct: 260 ---YPGIPVEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 316
Query: 951 FRISSCVSGLKFSSPV 966
+++ L S P+
Sbjct: 317 LTLTTNEEYLDLSQPL 332
>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A
Methanesulfonamide Diaminopyrimidine Inhibitor
Length = 276
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRF------ 793
HP+IV+L GV +E +++ E EL L+ RK ++ +A + +
Sbjct: 67 HPHIVKLIGVI-TENPVWIIMELCTLGELRSFLQV------RKYSLDLASLILYAYQLST 119
Query: 794 -LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA------YVA 845
L + S V D++ V+V D ++L GL+ Y DS +S ++A
Sbjct: 120 ALAYLESKRFVHRDIAARNVLVSSND--CVKLGDFGLSRYMEDSTYYKASKGKLPIKWMA 177
Query: 846 PETKESKDITEKGDIYGFGLILIDLL 871
PE+ + T D++ FG+ + ++L
Sbjct: 178 PESINFRRFTSASDVWMFGVCMWEIL 203
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 44/220 (20%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAI--GIAKALRFLHFHC 798
P + + +G + +++ EY+ G ++L + + I I K L +LH
Sbjct: 65 PYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLH--- 121
Query: 799 SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSK-----SINSSAYVAPETKESK 852
S + D+ V++ E ++L+ G+A TD++ + + ++APE +
Sbjct: 122 SEKKIHRDIKAANVLLSEHGE--VKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQS 179
Query: 853 DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCH-------LDTWVD 905
K DI+ G+ I+L G+ P +S+ H +
Sbjct: 180 AYDSKADIWSLGITAIELARGEPP------------------HSELHPMKVLFLIPKNNP 221
Query: 906 PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK 945
P + G+ S E VE C +P+ RP A ++ K
Sbjct: 222 PTLEGNYSKPLKEFVEA------CLNKEPSFRPTAKELLK 255
>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
pdb|3PXK|B Chain B, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
Length = 282
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRF------ 793
HP+IV+L GV +E +++ E EL L+ RK ++ +A + +
Sbjct: 73 HPHIVKLIGVI-TENPVWIIMELCTLGELRSFLQV------RKYSLDLASLILYAYQLST 125
Query: 794 -LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA------YVA 845
L + S V D++ V+V D ++L GL+ Y DS +S ++A
Sbjct: 126 ALAYLESKRFVHRDIAARNVLVSSND--CVKLGDFGLSRYMEDSTYYKASKGKLPIKWMA 183
Query: 846 PETKESKDITEKGDIYGFGLILIDLL 871
PE+ + T D++ FG+ + ++L
Sbjct: 184 PESINFRRFTSASDVWMFGVCMWEIL 209
>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine
pdb|4AA5|A Chain A, P38alpha Map Kinase Bound To Cmpd 33
Length = 365
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 81 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 139
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 140 LRGLKYIH---SADIIHRDLKPSNLAVNEDXE--LKILDFGLARHTDDEMTGYVATRWYR 194
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 195 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 226
>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2ETM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2IJM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
pdb|2IJM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
Length = 281
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRF------ 793
HP+IV+L GV +E +++ E EL L+ RK ++ +A + +
Sbjct: 72 HPHIVKLIGVI-TENPVWIIMELCTLGELRSFLQV------RKYSLDLASLILYAYQLST 124
Query: 794 -LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA------YVA 845
L + S V D++ V+V D ++L GL+ Y DS +S ++A
Sbjct: 125 ALAYLESKRFVHRDIAARNVLVSSND--CVKLGDFGLSRYMEDSTYYKASKGKLPIKWMA 182
Query: 846 PETKESKDITEKGDIYGFGLILIDLL 871
PE+ + T D++ FG+ + ++L
Sbjct: 183 PESINFRRFTSASDVWMFGVCMWEIL 208
>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|E Chain E, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|D Chain D, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4N|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E4N|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E5W|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4E5W|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4EHZ|A Chain A, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|B Chain B, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|C Chain C, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|D Chain D, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EI4|A Chain A, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4EI4|B Chain B, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4FK6|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
pdb|4FK6|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
Length = 302
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 20/150 (13%)
Query: 738 IMHPNIVRLHGVCRSE--KAAYLVYEYIEGKELSEVL----RNLSWERRRKVAIGIAKAL 791
+ H NIV+ G+C + L+ E++ L E L ++ +++ K A+ I K +
Sbjct: 80 LYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGM 139
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA--------- 842
+L S V D++ V+V+ E +++ GL ++ +
Sbjct: 140 DYLG---SRQYVHRDLAARNVLVES--EHQVKIGDFGLTKAIETDKEXXTVKDDRDSPVF 194
Query: 843 YVAPETKESKDITEKGDIYGFGLILIDLLT 872
+ APE D++ FG+ L +LLT
Sbjct: 195 WYAPECLMQSKFYIASDVWSFGVTLHELLT 224
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 44/220 (20%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAI--GIAKALRFLHFHC 798
P + + +G + +++ EY+ G ++L + + I I K L +LH
Sbjct: 65 PYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLH--- 121
Query: 799 SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSK-----SINSSAYVAPETKESK 852
S + D+ V++ E ++L+ G+A TD++ + + ++APE +
Sbjct: 122 SEKKIHRDIKAANVLLSEHGE--VKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQS 179
Query: 853 DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCH-------LDTWVD 905
K DI+ G+ I+L G+ P +S+ H +
Sbjct: 180 AYDSKADIWSLGITAIELARGEPP------------------HSELHPMKVLFLIPKNNP 221
Query: 906 PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK 945
P + G+ S E VE C +P+ RP A ++ K
Sbjct: 222 PTLEGNYSKPLKEFVEA------CLNKEPSFRPTAKELLK 255
>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map
Kinase Jnk1
Length = 370
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 18/150 (12%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR-NLSWERRRKVAIGIA 788
K++ H NI+ L V +K+ Y+V E ++ LS+V++ L ER + +
Sbjct: 78 KVVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDAN-LSQVIQMELDHERMSYLLYQML 136
Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK-----SINSSAY 843
++ LH S ++ D+ P ++V K + L++ GLA + + + Y
Sbjct: 137 VGIKHLH---SAGIIHRDLKPSNIVV--KSDATLKILDFGLARTAGTSFMMTPYVVTRYY 191
Query: 844 VAPETKESKDITEKGDIYGFGLILIDLLTG 873
APE E DI+ G+I+ +++ G
Sbjct: 192 RAPEVILGMGYKENVDIWSVGVIMGEMIKG 221
>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3O8T|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg-Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 76 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 134
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 135 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDAGLARHTDDEMTGYVATRWYR 189
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 190 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZR|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 27/162 (16%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------NLSWERRR--------KVA 784
H NI+ L G C + Y++ EY L E LR S++ R K
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 159
Query: 785 IGIAKAL-RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----KSI 838
+ L R + + S + D++ V+V + +R++ GLA ++ K+
Sbjct: 160 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTENN--VMRIADFGLARDINNIDYYKKTT 217
Query: 839 NSS---AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
N ++APE + T + D++ FG+++ ++ T G SP
Sbjct: 218 NGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSP 259
>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
pdb|3IPH|A Chain A, Crystal Structure Of P38 In Complex With A Biphenylamide
Inhibitor
Length = 360
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 76 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKXQKLTDDHVQFLIYQI 134
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 135 LRGLKYIH---SADIIHRDLKPSNLAVNEDXE--LKILDFGLARHTDDEMTGYVATRWYR 189
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 190 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 17/143 (11%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL--RNLSWERRRKV--AIGIAKALRFLH 795
HP+IV+L GV +E +++ E EL L R S + + A ++ AL +L
Sbjct: 450 HPHIVKLIGVI-TENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLE 508
Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA------YVAPET 848
S V D++ V+V D ++L GL+ Y DS +S ++APE+
Sbjct: 509 ---SKRFVHRDIAARNVLVSSND--CVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPES 563
Query: 849 KESKDITEKGDIYGFGLILIDLL 871
+ T D++ FG+ + ++L
Sbjct: 564 INFRRFTSASDVWMFGVCMWEIL 586
>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map
Kinase Jnk1
Length = 370
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 18/150 (12%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR-NLSWERRRKVAIGIA 788
K++ H NI+ L V +K+ Y+V E ++ LS+V++ L ER + +
Sbjct: 78 KVVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDAN-LSQVIQMELDHERMSYLLYQML 136
Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK-----SINSSAY 843
++ LH S ++ D+ P ++V K + L++ GLA + + + Y
Sbjct: 137 VGIKHLH---SAGIIHRDLKPSNIVV--KSDATLKILDFGLARTAGTSFMMTPYVVTRYY 191
Query: 844 VAPETKESKDITEKGDIYGFGLILIDLLTG 873
APE E DI+ G+I+ +++ G
Sbjct: 192 RAPEVILGMGYKENVDIWSVGVIMGEMIKG 221
>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
pdb|3E93|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
Length = 371
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 87 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 145
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 146 LRGLKYIH---SADIIHRDLKPSNLAVNEDXE--LKILDFGLARHTDDEMTGYVATRWYR 200
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 201 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 232
>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A19|C Chain C, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|B Chain B, Pkr Kinase Domain-Eif2alpha Complex
Length = 284
Score = 33.9 bits (76), Expect = 0.40, Method: Composition-based stats.
Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 36/206 (17%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGV-- 749
G G +K + + +V+K++ N +V KL H NIV +G
Sbjct: 20 GSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAER----EVKALAKL-DHVNIVHYNGCWD 74
Query: 750 -------------CRSE-KAAYLVYEYIEGKELSEVLRNLSWERRRKVAI-----GIAKA 790
RS+ K ++ E+ + L + + E+ KV I K
Sbjct: 75 GFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKG 134
Query: 791 LRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC--TDSKSINSSA---YVA 845
+ ++H S ++ D+ P + + D +++ GL D K S Y++
Sbjct: 135 VDYIH---SKKLINRDLKPSNIFL--VDTKQVKIGDFGLVTSLKNDGKRXRSKGTLRYMS 189
Query: 846 PETKESKDITEKGDIYGFGLILIDLL 871
PE S+D ++ D+Y GLIL +LL
Sbjct: 190 PEQISSQDYGKEVDLYALGLILAELL 215
>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B
(STK17B)
pdb|3LM5|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B
(STK17B) IN Complex With Quercetin
Length = 327
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 14/147 (9%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKE-----LSEVLRNLSWERRRKVAIGIAKALRFLH 795
P ++ LH V + L+ EY G E L E+ +S ++ I + + +LH
Sbjct: 89 PRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLH 148
Query: 796 FHCSPSVVAGDVSPGKVIVDG-KDEPHLRLSVPGLAY-----CTDSKSINSSAYVAPETK 849
++V D+ P +++ +++ G++ C + + + Y+APE
Sbjct: 149 ---QNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEIL 205
Query: 850 ESKDITEKGDIYGFGLILIDLLTGKSP 876
IT D++ G+I LLT SP
Sbjct: 206 NYDPITTATDMWNIGIIAYMLLTHTSP 232
>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3OBJ|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Mutants In
Response To Inhibitor Binding
Length = 360
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 76 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 134
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ ++ L++ GLA TD + + + Y
Sbjct: 135 LRGLKYIH---SADIIHRDLKPSNLAVN--EDCELKILDRGLARHTDDEMTGYVATRWYR 189
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 190 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 33.9 bits (76), Expect = 0.45, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 787 IAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC--TDSKSINSSA-- 842
I K + ++H S ++ D+ P + + D +++ GL D K S
Sbjct: 145 ITKGVDYIH---SKKLIHRDLKPSNIFL--VDTKQVKIGDFGLVTSLKNDGKRTRSKGTL 199
Query: 843 -YVAPETKESKDITEKGDIYGFGLILIDLL 871
Y++PE S+D ++ D+Y GLIL +LL
Sbjct: 200 RYMSPEQISSQDYGKEVDLYALGLILAELL 229
>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based
Inhibitor
Length = 383
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 99 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 157
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ ++ L++ GLA TD + + + Y
Sbjct: 158 LRGLKYIH---SADIIHRDLKPSNLAVN--EDCELKILDFGLARHTDDEMXGYVATRWYR 212
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 213 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 244
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 32/174 (18%)
Query: 134 LEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLI 193
LE LD +N LS +PE S LK LD+ N L + + +L + A N +
Sbjct: 102 LEYLDACDNRLST-LPELPAS---LKHLDVDNNQLT-----XLPELPALLEYINADNNQL 152
Query: 194 GSIPR-----EIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIP--P 246
+P E+ +RN + +L E+P+ SL LD V NL +P P
Sbjct: 153 TXLPELPTSLEVLSVRNNQLTFLP------ELPE------SLEALD-VSTNLLESLPAVP 199
Query: 247 SFGNLSNLRYLFLY--QNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQ 298
+ S +F +N++T IP++IL L + L DN LS I E + Q
Sbjct: 200 VRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 38/219 (17%)
Query: 334 NQFS---------GEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSL 384
NQFS +P NL Q +TV++++ N L +PE L + + ++
Sbjct: 59 NQFSELQLNRLNLSSLPDNLPPQ--ITVLEITQNALIS-LPE-------LPASLEYLDAC 108
Query: 385 EGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLP-LVYFLDISGNDLSGRIGEQKWEM 443
+ ++ SL+ + + NN+L+ LP L+ +++ N L+ + E
Sbjct: 109 DNRLSTLPELPASLKHLDVDNNQLTX-----LPELPALLEYINADNNQLTX-LPELP--- 159
Query: 444 TSLQMLNLAGNN--FSGKLPDSFGSDQLENLDLSENRFSG--TIPRSFGRLSELMQLKIS 499
TSL++L++ N F +LP+S LE LD+S N +P E
Sbjct: 160 TSLEVLSVRNNQLTFLPELPES-----LEALDVSTNLLESLPAVPVRNHHSEETEIFFRC 214
Query: 500 RNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEM 538
R IPE + S ++ L +N LS I SLS+
Sbjct: 215 RENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253
>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex
With Dp802
Length = 354
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 76 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 134
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 135 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGXVATRWYR 189
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 190 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 33.9 bits (76), Expect = 0.50, Method: Composition-based stats.
Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 28/187 (14%)
Query: 707 NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
N V K + T++ +F + +Q K + H +V+L+ V SE+ +V EY+
Sbjct: 30 NGTTRVAIKTLKPGTMSPEAFLQE-AQVMKKLRHEKLVQLYAVV-SEEPIXIVTEYMSKG 87
Query: 767 ELSEVLRNLSWERRR---------KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK 817
L + L+ + + R ++A G+A R + H + A ++ G+ +V
Sbjct: 88 SLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVH--RDLRAANILVGENLV--- 142
Query: 818 DEPHLRLSVPGLAYCTDSKSINSS-------AYVAPETKESKDITEKGDIYGFGLILIDL 870
+++ GLA + + + APE T K D++ FG++L +L
Sbjct: 143 ----CKVADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTEL 198
Query: 871 LT-GKSP 876
T G+ P
Sbjct: 199 TTKGRVP 205
>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3O8U|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 76 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 134
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 135 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDYGLARHTDDEMTGYVATRWYR 189
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 190 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3OBG|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Mutants In
Response To Inhibitor Binding
pdb|3OC1|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 76 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 134
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ ++ L++ GLA TD + + + Y
Sbjct: 135 LRGLKYIH---SADIIHRDLKPSNLAVN--EDCELKILDGGLARHTDDEMTGYVATRWYR 189
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 190 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 743 IVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSV 802
+ + +G +++ EY+ G ++LR ++ + +A + + L+ L + S
Sbjct: 83 VTKYYGSYLKGSKLWIIMEYLGGGSALDLLRAGPFDEFQ-IATMLKEILKGLDYLHSEKK 141
Query: 803 VAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSK-----SINSSAYVAPETKESKDITE 856
+ D+ V++ ++ ++L+ G+A TD++ + + ++APE +
Sbjct: 142 IHRDIKAANVLLS--EQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDS 199
Query: 857 KGDIYGFGLILIDLLTGKSP 876
K DI+ G+ I+L G+ P
Sbjct: 200 KADIWSLGITAIELAKGEPP 219
>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|C Chain C, Crystal Structure Of Cdk4CYCLIN D3
Length = 308
Score = 33.5 bits (75), Expect = 0.55, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 27/160 (16%)
Query: 740 HPNIVRLHGVCRSEKA-----AYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAK 789
HPN+VRL VC + + LV+E+++ ++L L L E + + +
Sbjct: 73 HPNVVRLMDVCATSRTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLR 131
Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----SKSINSSAYV 844
L FLH +C +V D+ P ++V ++L+ GLA + + + Y
Sbjct: 132 GLDFLHANC---IVHRDLKPENILVTSGGT--VKLADFGLARIYSYQMALTPVVVTLWYR 186
Query: 845 APETKESKDITEKGDIYGFGLILID------LLTGKSPAD 878
APE D++ G I + L G S AD
Sbjct: 187 APEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEAD 226
>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map
Kinase
Length = 360
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 76 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 134
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ ++ L++ GLA TD + + + Y
Sbjct: 135 LRGLKYIH---SADIIHRDLKPSNLAVN--EDCELKILDFGLARHTDDEMTGYVATRWYR 189
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 190 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A
Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE
COMPLEX IN Solution
Length = 359
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 81 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 139
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 140 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGYVATRWYR 194
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 195 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 226
>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex
pdb|2QD9|A Chain A, P38 Alpha Map Kinase Inhibitor Based On Heterobicyclic
Scaffolds
pdb|2RG5|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11b
pdb|2RG6|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11j
pdb|3C5U|A Chain A, P38 Alpha Map Kinase Complexed With A Benzothiazole Based
Inhibitor
pdb|3BV2|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 30
pdb|3BV3|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 2
pdb|3BX5|A Chain A, P38 Alpha Map Kinase Complexed With Bms-640994
pdb|3L8X|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Pyrimidine
Based Inhibitor
pdb|3NWW|A Chain A, P38 Alpha Kinase Complexed With A
2-Aminothiazol-5-Yl-Pyrimidine Based Inhibitor
pdb|3MVL|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVL|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVM|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3MVM|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3OCG|A Chain A, P38 Alpha Kinase Complexed With A 5-Amino-Pyrazole Based
Inhibitor
pdb|3S4Q|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Triazine Based
Inhibitor
Length = 366
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 82 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 140
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 141 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGYVATRWYR 195
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 196 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 227
>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9Z|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 33.5 bits (75), Expect = 0.59, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 27/160 (16%)
Query: 740 HPNIVRLHGVCRSEKA-----AYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAK 789
HPN+VRL VC + + LV+E+++ ++L L L E + + +
Sbjct: 65 HPNVVRLMDVCATSRTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLR 123
Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----SKSINSSAYV 844
L FLH +C +V D+ P ++V ++L+ GLA + + + Y
Sbjct: 124 GLDFLHANC---IVHRDLKPENILVTSGGT--VKLADFGLARIYSYQMALAPVVVTLWYR 178
Query: 845 APETKESKDITEKGDIYGFGLILID------LLTGKSPAD 878
APE D++ G I + L G S AD
Sbjct: 179 APEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEAD 218
>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A
Dihydroquinazolinone Inhibitor
pdb|1OUK|A Chain A, The Structure Of P38 Alpha In Complex With A
Pyridinylimidazole Inhibitor
pdb|1OUY|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydropyrido- Pyrimidine Inhibitor
pdb|1R39|A Chain A, The Structure Of P38alpha
pdb|1YQJ|A Chain A, Crystal Structure Of P38 Alpha In Complex With A Selective
Pyridazine Inhibitor
pdb|2OKR|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2OKR|D Chain D, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|B Chain B, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|1WFC|A Chain A, Structure Of Apo, Unphosphorylated, P38 Mitogen Activated
Protein Kinase P38 (P38 Map Kinase) The Mammalian
Homologue Of The Yeast Hog1 Protein
pdb|3DS6|A Chain A, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|B Chain B, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|C Chain C, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|D Chain D, P38 Complex With A Phthalazine Inhibitor
pdb|3FC1|X Chain X, Crystal Structure Of P38 Kinase Bound To
Pyrimido-Pyridazinone Inhibitor
pdb|3GFE|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor
pdb|3ITZ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridazine Inhibitor
pdb|3LHJ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor.
pdb|3ZYA|A Chain A, Human P38 Map Kinase In Complex With 2-Amino-Phenylamino-
Dibenzosuberone
pdb|3U8W|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Triazolopyridazinone Inhibitor
Length = 366
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 82 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 140
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 141 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGYVATRWYR 195
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 196 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 227
>pdb|3HEC|A Chain A, P38 In Complex With Imatinib
pdb|3HEG|A Chain A, P38 In Complex With Sorafenib
Length = 348
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 72 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 130
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 131 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGYVATRWYR 185
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 186 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 217
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 33.5 bits (75), Expect = 0.61, Method: Composition-based stats.
Identities = 36/183 (19%), Positives = 80/183 (43%), Gaps = 19/183 (10%)
Query: 707 NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
N+ V K + T++ +F + + K + H +VRL+ V E+ Y++ E++
Sbjct: 34 NNSTKVAVKTLKPGTMSVQAFLEE-ANLMKTLQHDKLVRLYAVVTKEEPIYIITEFMAKG 92
Query: 767 ELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPH 821
L + L++ + + + IA+ + ++ + + D+ V+V +
Sbjct: 93 SLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIE---RKNYIHRDLRAANVLV--SESLM 147
Query: 822 LRLSVPGLAYCTDSKSINSS-------AYVAPETKESKDITEKGDIYGFGLILIDLLT-G 873
+++ GLA + + + APE T K +++ FG++L +++T G
Sbjct: 148 CKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGCFTIKSNVWSFGILLYEIVTYG 207
Query: 874 KSP 876
K P
Sbjct: 208 KIP 210
>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant
Length = 360
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 76 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 134
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ ++ L++ GLA TD + + + Y
Sbjct: 135 LRGLKYIH---SADIIHRDLKPSNLAVN--EDCELKILDFGLARHTDDEMTGYVATRWYR 189
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 190 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map
Kinase Jnk1
Length = 370
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR-NLSWERRRKVAIGIA 788
K++ H NI+ L V +K+ Y+V E ++ LS+V++ L ER + +
Sbjct: 78 KVVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDAN-LSQVIQMELDHERMSYLLYQML 136
Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK-----SINSSAY 843
++ LH S ++ D+ P ++V K + L++ GLA + + + Y
Sbjct: 137 VGIKHLH---SAGIIHRDLKPSNIVV--KSDATLKILDFGLARTAGTSFMMTPYVVTRYY 191
Query: 844 VAPETKESKDITEKGDIYGFGLILIDLLTG 873
APE E DI+ G I+ +++ G
Sbjct: 192 RAPEVILGMGYKENVDIWSVGCIMGEMIKG 221
>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376
pdb|3NNV|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp437
pdb|3NNW|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp802
Length = 354
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 76 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 134
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 135 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGYVATRWYR 189
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 190 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor
Length = 383
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 99 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 157
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ ++ L++ GLA TD + + + Y
Sbjct: 158 LRGLKYIH---SADIIHRDLKPSNLAVN--EDCELKILDFGLARHTDDEMTGYVATRWYR 212
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 213 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 244
>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499
pdb|3FKO|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3668
pdb|3FLN|C Chain C, P38 Kinase Crystal Structure In Complex With R1487
Length = 372
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 88 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 146
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ ++ L++ GLA TD + + + Y
Sbjct: 147 LRGLKYIH---SADIIHRDLKPSNLAVN--EDCELKILDFGLARHTDDEMTGYVATRWYR 201
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 202 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 233
>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine
pdb|2YIX|A Chain A, Triazolopyridine Inhibitors Of P38
Length = 351
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 73 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 131
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 132 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGYVATRWYR 186
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 187 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 218
>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant
Length = 360
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 76 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 134
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ ++ L++ GLA TD + + + Y
Sbjct: 135 LRGLKYIH---SADIIHRDLKPSNLAVN--EDCELKILDFGLARHTDDEMTGYVATRWYR 189
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 190 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121
Length = 362
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 78 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 136
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ ++ L++ GLA TD + + + Y
Sbjct: 137 LRGLKYIH---SADIIHRDLKPSNLAVN--EDCELKILDFGLARHTDDEMTGYVATRWYR 191
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 192 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 223
>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955
Length = 350
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 74 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 132
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ ++ L++ GLA TD + + + Y
Sbjct: 133 LRGLKYIH---SADIIHRDLKPSNLAVN--EDCELKILDFGLARHTDDEMTGYVATRWYR 187
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 188 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 219
>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole
Inhibitor
Length = 372
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 88 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 146
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ ++ L++ GLA TD + + + Y
Sbjct: 147 LRGLKYIH---SADIIHRDLKPSNLAVN--EDCELKILDFGLARHTDDEMTGYVATRWYR 201
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 202 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 233
>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase
Length = 380
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 96 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 154
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 155 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMXGXVATRWYR 209
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 210 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 241
>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195
pdb|3FKL|A Chain A, P38 Kinase Crystal Structure In Complex With Ro9552
pdb|3FKN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro7125
pdb|3FL4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro5634
pdb|3FLQ|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((S)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin
pdb|3FLS|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((R)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin-7-One
pdb|3FLW|A Chain A, P38 Kinase Crystal Structure In Complex With Pamapimod
pdb|3FLY|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-Isopropylamino-8-Methyl-8h-Pyrido[2,
3- D]pyrimidin-7-One
pdb|3FLZ|A Chain A, P38 Kinase Crystal Structure In Complex With
8-Methyl-6-Phenoxy-2-
(Tetrahydro-Pyran-4-Ylamino)-8h-Pyrido[2,
3-D]pyrimidin-7-One
pdb|3FMH|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((R)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FMJ|A Chain A, P38 Kinase Crystal Structure In Complex With
4-(5-Methyl-3-Phenyl- Isoxazol-4-Yl)-Pyrimidin-2-Ylamine
pdb|3FMK|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((S)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FML|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6224
pdb|3FMM|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6226
pdb|3FMN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro2530
pdb|3FSF|A Chain A, P38 Kinase Crystal Structure In Complex With 3-(2,6-
Dichloro-Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-
Phenylamino]-
1-Methyl-3,4-Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3FSK|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6257
Length = 372
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 88 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 146
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ ++ L++ GLA TD + + + Y
Sbjct: 147 LRGLKYIH---SADIIHRDLKPSNLAVN--EDCELKILDFGLARHTDDEMTGYVATRWYR 201
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 202 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 233
>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In
Complex With 4-[3-Methylsulfanylanilino]-6,7-
Dimethoxyquinazoline
pdb|1KV1|A Chain A, P38 Map Kinase In Complex With Inhibitor 1
pdb|1KV2|A Chain A, Human P38 Map Kinase In Complex With Birb 796
pdb|1WBO|A Chain A, Fragment Based P38 Inhibitors
pdb|1W7H|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W82|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W83|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W84|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1ZZ2|A Chain A, Two Classes Of P38alpha Map Kinase Inhibitors Having A
Common Diphenylether Core But Exhibiting Divergent
Binding Modes
pdb|1WBN|A Chain A, Fragment Based P38 Inhibitors
pdb|1WBS|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBT|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-based Lead Generation.
pdb|1WBV|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBW|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1ZYJ|A Chain A, Human P38 Map Kinase In Complex With Inhibitor 1a
pdb|2ZAZ|A Chain A, Crystal Structure Of P38 In Complex With 4-Anilino
Quinoline Inhibitor
pdb|2ZB0|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|2ZB1|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|3HL7|A Chain A, Crystal Structure Of Human P38alpha Complexed With Sd-0006
pdb|3HLL|A Chain A, Crystal Structure Of Human P38alpha Complexed With
Ph-797804
pdb|3HP2|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyridinone Compound
pdb|3HP5|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyrimidopyridazinone Compound
pdb|3KF7|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Triazolopyrimidine Compound
pdb|3MGY|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3ROC|A Chain A, Crystal Structure Of Human P38 Alpha Complexed With A
Pyrimidinone Compound
pdb|3RIN|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|4E5B|A Chain A, Structure Of P38a Map Kinase Without Bog
pdb|4E6A|A Chain A, P38a-Pia23 Complex
pdb|4E6C|A Chain A, P38a-perifosine Complex
pdb|4E8A|A Chain A, The Crystal Structure Of P38a Map Kinase In Complex With
Pia24
Length = 360
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 76 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 134
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 135 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGYVATRWYR 189
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 190 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
Length = 349
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 73 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 131
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 132 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGYVATRWYR 186
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 187 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 218
>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715
pdb|3ZSH|A Chain A, X-Ray Structure Of P38alpha Bound To Scio-469
pdb|3ZSI|A Chain A, X-Ray Structure Of P38alpha Bound To Vx-745
pdb|3ZS5|A Chain A, Structural Basis For Kinase Selectivity Of Three Clinical
P38alpha Inhibitors
Length = 362
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 78 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 136
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 137 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGYVATRWYR 191
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 192 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 223
>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A
Pyrrole-2- Carboxamide Inhibitor
Length = 371
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 87 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 145
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ ++ L++ GLA TD + + + Y
Sbjct: 146 LRGLKYIH---SADIIHRDLKPSNLAVN--EDCELKILDFGLARHTDDEMTGYVATRWYR 200
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 201 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 232
>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 33.5 bits (75), Expect = 0.66, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 27/160 (16%)
Query: 740 HPNIVRLHGVCRSEKA-----AYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAK 789
HPN+VRL VC + + LV+E+++ ++L L L E + + +
Sbjct: 65 HPNVVRLMDVCATSRTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLR 123
Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS-----INSSAYV 844
L FLH +C +V D+ P ++V ++L+ GLA + + + Y
Sbjct: 124 GLDFLHANC---IVHRDLKPENILVTSGGT--VKLADFGLARIYSYQMALFPVVVTLWYR 178
Query: 845 APETKESKDITEKGDIYGFGLILID------LLTGKSPAD 878
APE D++ G I + L G S AD
Sbjct: 179 APEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEAD 218
>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 33.5 bits (75), Expect = 0.66, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 27/160 (16%)
Query: 740 HPNIVRLHGVCRSEKA-----AYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAK 789
HPN+VRL VC + + LV+E+++ ++L L L E + + +
Sbjct: 65 HPNVVRLMDVCATSRTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLR 123
Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS-----INSSAYV 844
L FLH +C +V D+ P ++V ++L+ GLA + + + Y
Sbjct: 124 GLDFLHANC---IVHRDLKPENILVTSGGT--VKLADFGLARIYSYQMALDPVVVTLWYR 178
Query: 845 APETKESKDITEKGDIYGFGLILID------LLTGKSPAD 878
APE D++ G I + L G S AD
Sbjct: 179 APEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEAD 218
>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant
Length = 360
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 76 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 134
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ ++ L++ GLA TD + + + Y
Sbjct: 135 LRGLKYIH---SADIIHRDLKPSNLAVN--EDCELKILDFGLARHTDDEMTGYVATRWYR 189
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 190 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase
Length = 362
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 78 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 136
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 137 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGYVATRWYR 191
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 192 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 223
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 23/182 (12%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKL--IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS 769
V K+++V T ++ G L H NI+ G + A +V ++ EG L
Sbjct: 37 VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQLA-IVTQWCEGSSLY 95
Query: 770 EVLR--NLSWERRRKVAIG--IAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS 825
L +E ++ + I A+ + +LH + S++ D+ + + ++ +++
Sbjct: 96 HHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFL--HEDNTVKIG 150
Query: 826 VPGLAYCTDSKS--------INSSAYVAPET---KESKDITEKGDIYGFGLILIDLLTGK 874
GLA S S ++APE ++S + + D+Y FG++L +L+TG+
Sbjct: 151 DFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQ 210
Query: 875 SP 876
P
Sbjct: 211 LP 212
>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1-
Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3-
Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide
Length = 380
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 96 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 154
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ ++ L++ GLA TD + + + Y
Sbjct: 155 LRGLKYIH---SADIIHRDLKPSNLAVN--EDCELKILDFGLARHTDDEMTGYVATRWYR 209
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 210 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 241
>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
Length = 360
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 76 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKXQKLTDDHVQFLIYQI 134
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 135 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGYVATRWYR 189
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 190 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea
pdb|2BAK|A Chain A, P38alpha Map Kinase Bound To Mpaq
pdb|4A9Y|A Chain A, P38alpha Map Kinase Bound To Cmpd 8
pdb|4AA0|A Chain A, P38alpha Map Kinase Bound To Cmpd 2
pdb|4AA4|A Chain A, P38alpha Map Kinase Bound To Cmpd 22
pdb|4AAC|A Chain A, P38alpha Map Kinase Bound To Cmpd 29
Length = 365
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 81 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 139
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 140 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGYVATRWYR 194
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 195 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 226
>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain
In Complex With A Monocyclic Pyrazolone Inhibitor
Length = 360
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 76 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 134
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 135 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMAGFVATRWYR 189
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 190 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|3MW1|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|2YIS|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase.
pdb|2YIW|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase
Length = 359
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 75 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 133
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 134 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGYVATRWYR 188
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 189 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 220
>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48
pdb|3GCU|B Chain B, Human P38 Map Kinase In Complex With Rl48
pdb|3HV4|A Chain A, Human P38 Map Kinase In Complex With Rl51
pdb|3HV4|B Chain B, Human P38 Map Kinase In Complex With Rl51
pdb|3HV5|A Chain A, Human P38 Map Kinase In Complex With Rl24
pdb|3HV5|B Chain B, Human P38 Map Kinase In Complex With Rl24
pdb|3HV6|A Chain A, Human P38 Map Kinase In Complex With Rl39
pdb|3HV7|A Chain A, Human P38 Map Kinase In Complex With Rl38
pdb|3HUC|A Chain A, Human P38 Map Kinase In Complex With Rl40
pdb|3LFA|A Chain A, Human P38 Map Kinase In Complex With Dasatinib
pdb|3QUE|A Chain A, Human P38 Map Kinase In Complex With Skepinone-L
pdb|3QUD|A Chain A, Human P38 Map Kinase In Complex With
2-Amino-Phenylamino-Benzophenone
pdb|3UVP|A Chain A, Human P38 Map Kinase In Complex With A Benzamide
Substituted Benzosuberone
pdb|3UVQ|A Chain A, Human P38 Map Kinase In Complex With A Dibenzosuberone
Derivative
pdb|4EH2|A Chain A, Human P38 Map Kinase In Complex With Np-F1 And Rl87
pdb|4EH3|A Chain A, Human P38 Map Kinase In Complex With Np-F2 And Rl87
pdb|4EH4|A Chain A, Human P38 Map Kinase In Complex With Np-F3 And Rl87
pdb|4EH5|A Chain A, Human P38 Map Kinase In Complex With Np-F4 And Rl87
pdb|4EH6|A Chain A, Human P38 Map Kinase In Complex With Np-F5 And Rl87
pdb|4EH7|A Chain A, Human P38 Map Kinase In Complex With Np-F6 And Rl87
pdb|4EH8|A Chain A, Human P38 Map Kinase In Complex With Np-F7 And Rl87
pdb|4EH9|A Chain A, Human P38 Map Kinase In Complex With Np-F11 And Rl87
pdb|4EHV|A Chain A, Human P38 Map Kinase In Complex With Np-F10 And Rl87
pdb|3UVR|A Chain A, Human P38 Map Kinase In Complex With Km064
pdb|4DLI|A Chain A, Human P38 Map Kinase In Complex With Rl87
pdb|4DLJ|A Chain A, Human P38 Map Kinase In Complex With Rl163
Length = 360
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 76 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 134
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ ++ L++ GLA TD + + + Y
Sbjct: 135 LRGLKYIH---SADIIHRDLKPSNLAVN--EDCELKILDFGLARHTDDEMTGYVATRWYR 189
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 190 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase
Length = 367
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 83 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 141
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 142 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGYVATRWYR 196
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 197 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 228
>pdb|2OZA|B Chain B, Structure Of P38alpha Complex
pdb|3P78|A Chain A, P38 Inhibitor-Bound
pdb|3P79|A Chain A, P38 Inhibitor-Bound
pdb|3P7A|A Chain A, P38 Inhibitor-Bound
pdb|3P7B|A Chain A, P38 Inhibitor-Bound
pdb|3P7C|A Chain A, P38 Inhibitor-Bound
pdb|3P5K|A Chain A, P38 Inhibitor-Bound
Length = 366
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 82 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 140
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 141 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGYVATRWYR 195
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 196 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 227
>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With
Inhibitor Pg-874743
pdb|2GHM|A Chain A, Mutated Map Kinase P38 (Mus Musculus) In Complex With
Inhbitor Pg-895449
Length = 348
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 72 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 130
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 131 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMAGFVATRWYR 185
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 186 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 217
>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38)
Length = 360
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 76 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 134
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 135 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMAGFVATRWYR 189
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 190 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With
Inhibitor Pg-892579
pdb|2GTN|A Chain A, Mutated Map Kinase P38 (mus Musculus) In Complex With
Inhbitor Pg-951717
Length = 348
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 72 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 130
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 131 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGYVATRWYR 185
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 186 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 217
>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In
Phosphorylated P38a And In Solution
Length = 370
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 86 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 144
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 145 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGYVATRWYR 199
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 200 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 231
>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995
pdb|1BL7|A Chain A, The Complex Structure Of The Map Kinase P38SB220025
pdb|2EWA|A Chain A, Dual Binding Mode Of Pyridinylimidazole To Map Kinase P38
pdb|1A9U|A Chain A, The Complex Structure Of The Map Kinase P38SB203580
pdb|3HA8|A Chain A, The Complex Structure Of The Map Kinase P38COMPOUND 14B
Length = 379
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 95 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 153
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ ++ L++ GLA TD + + + Y
Sbjct: 154 LRGLKYIH---SADIIHRDLKPSNLAVN--EDCELKILDFGLARHTDDEMTGYVATRWYR 208
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 209 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 240
>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Nuclear Substrate Mef2a
pdb|1LEZ|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Activator Mkk3b
Length = 360
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 76 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 134
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 135 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGYVATRWYR 189
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 190 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
pdb|3MPA|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 76 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 134
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ ++ L++ GLA TD + + + Y
Sbjct: 135 LRGLKYIH---SADIIHRDLKPSNLAVN--EDCELKILGFGLARHTDDEMTGYVATRWYR 189
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 190 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2
pdb|3E7O|B Chain B, Crystal Structure Of Jnk2
Length = 360
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 16/149 (10%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK 789
K + H NI+ L V +K YLV E ++ + L ER + +
Sbjct: 76 KCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIHMELDHERMSYLLYQMLC 135
Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK-----SINSSAYV 844
++ LH S ++ D+ P ++V K + L++ GLA + + + Y
Sbjct: 136 GIKHLH---SAGIIHRDLKPSNIVV--KSDCTLKILDFGLARTASTNFMMTPYVVTRYYR 190
Query: 845 APETKESKDITEKGDIYGFGLILIDLLTG 873
APE E DI+ G I+ +L+ G
Sbjct: 191 APEVILGMGYKENVDIWSVGCIMGELVKG 219
>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk
Docking Partner
Length = 380
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 96 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 154
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 155 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGYVATRWYR 209
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 210 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 241
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 6/140 (4%)
Query: 472 LDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHI 531
L+L N+ F +L++L +L +S+N++ KL L L N+L
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 532 PASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPST---GAFLAI 588
++ L +L L NQL R+ SL ++ + N + S P +L
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 152
Query: 589 NATAVAGNDLCGGDSTSGLP 608
N+ G+ C G SG P
Sbjct: 153 NSQKEQGSAKCSG---SGKP 169
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 179 ITSLQIFTLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEIGD-LTSLNHLDLV 236
+T L +L+ NQ I S+P + +L L +YL N L +P + D LT L L L
Sbjct: 51 LTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKELALD 108
Query: 237 YNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPK 270
N L F L++L+ ++L+ N S P+
Sbjct: 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome.
pdb|2PWL|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 27/162 (16%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------NLSWERRR--------KVA 784
H NI+ L G C + Y++ EY L E LR S++ R K
Sbjct: 100 HKNIIHLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 159
Query: 785 IGIAKAL-RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----KSI 838
+ L R + + S + D++ V+V + ++++ GLA ++ K+
Sbjct: 160 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNV--MKIADFGLARDINNIDYYKKTT 217
Query: 839 NSS---AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
N ++APE + T + D++ FG+++ ++ T G SP
Sbjct: 218 NGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSP 259
>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655
pdb|1P38|A Chain A, The Structure Of The Map Kinase P38 At 2.1 Angstoms
Resolution
Length = 379
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 95 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 153
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 154 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGYVATRWYR 208
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 209 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 240
>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P-
Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl-
Pyridin-3-Yl)naphthalen-1-Yl]urea
pdb|3CTQ|A Chain A, Structure Of Map Kinase P38 In Complex With A
1-O-Tolyl-1,2, 3-Triazole-4-Carboxamide
Length = 348
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 72 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCAKLTDDHVQFLIYQI 130
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GLA TD + + + Y
Sbjct: 131 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDDEMTGYVATRWYR 185
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 186 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 217
>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
pdb|2PZP|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 27/162 (16%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------NLSWERRR--------KVA 784
H NI+ L G C + Y++ EY L E LR S++ R K
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 159
Query: 785 IGIAKAL-RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----KSI 838
+ L R + + S + D++ V+V + ++++ GLA ++ K+
Sbjct: 160 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTENN--VMKIADFGLARDINNIDYYKKTT 217
Query: 839 NSS---AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
N ++APE + T + D++ FG+++ ++ T G SP
Sbjct: 218 NGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSP 259
>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map
Kinase Jnk1
Length = 370
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR-NLSWERRRKVAIGIA 788
K++ H NI+ L V +K+ Y+V E ++ LS+V++ L ER + +
Sbjct: 78 KVVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDAN-LSQVIQMELDHERMSYLLYQML 136
Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK-----SINSSAY 843
++ LH S ++ D+ P ++V K + L++ GLA + + + Y
Sbjct: 137 CGIKHLH---SAGIIHRDLKPSNIVV--KSDATLKILDFGLARTAGTSFMMTPYVVTRYY 191
Query: 844 VAPETKESKDITEKGDIYGFGLILIDLLTG 873
APE E DI+ G I+ +++ G
Sbjct: 192 RAPEVILGMGYKENVDIWSVGCIMGEMIKG 221
>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|C Chain C, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|D Chain D, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome
Length = 324
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 27/162 (16%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------NLSWERRR--------KVA 784
H NI+ L G C + Y++ EY L E LR S++ R K
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 159
Query: 785 IGIAKAL-RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA--------YCTDS 835
+ L R + + S + D++ V+V + ++++ GLA Y +
Sbjct: 160 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTENN--VMKIADFGLARDINNIDYYKNTT 217
Query: 836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
++APE + T + D++ FG+++ ++ T G SP
Sbjct: 218 NGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSP 259
>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZ5|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 27/162 (16%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------NLSWERRR--------KVA 784
H NI+ L G C + Y++ EY L E LR S++ R K
Sbjct: 100 HKNIITLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 159
Query: 785 IGIAKAL-RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----KSI 838
+ L R + + S + D++ V+V + ++++ GLA ++ K+
Sbjct: 160 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTENN--VMKIADFGLARDINNIDYYKKTT 217
Query: 839 NSS---AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
N ++APE + T + D++ FG+++ ++ T G SP
Sbjct: 218 NGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSP 259
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Query: 137 LDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSI 196
LDLS N L SF L+VLDL + + +++ L L N +
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 197 PREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG-QIPPSFGNLSNLR 255
L +L+ + NL+ IG L +L L++ +N + ++P F NL+NL
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 153
Query: 256 YLFLYQNKL 264
+L L NK+
Sbjct: 154 HLDLSSNKI 162
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 94/254 (37%), Gaps = 37/254 (14%)
Query: 387 KIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSL 446
KIP++L S + + L N L S F P + LD+S ++ ++ L
Sbjct: 22 KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 79
Query: 447 QMLNLAGNNFSGKLPDSF-GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFG 505
L L GN +F G L+ L E + G L L +L ++ N +
Sbjct: 80 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 139
Query: 506 -DIPEELSSCKKLVSLDLSNNQLSGHIPASLS---EMPV--------------------- 540
+PE S+ L LDLS+N++ L +MP+
Sbjct: 140 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 199
Query: 541 ---LGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPST---GAFLAINATAVA 594
L +L L NQL R+ SL ++ + N + S P +L N+
Sbjct: 200 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 259
Query: 595 GNDLCGGDSTSGLP 608
G+ C G SG P
Sbjct: 260 GSAKCSG---SGKP 270
>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580
pdb|3GCQ|A Chain A, Human P38 Map Kinase In Complex With Rl45
pdb|3GCS|A Chain A, Human P38 Map Kinase In Complex With Sorafenib
pdb|3GCV|A Chain A, Human P38 Map Kinase In Complex With Rl62
pdb|3HV3|A Chain A, Human P38 Map Kinase In Complex With Rl49
pdb|3IW5|A Chain A, Human P38 Map Kinase In Complex With An Indole Derivative
pdb|3IW6|A Chain A, Human P38 Map Kinase In Complex With A Benzylpiperazin-
Pyrrol
pdb|3IW7|A Chain A, Human P38 Map Kinase In Complex With An Imidazo-Pyridine
pdb|3IW8|A Chain A, Structure Of Inactive Human P38 Map Kinase In Complex With
A Thiazole-Urea
pdb|3HUB|A Chain A, Human P38 Map Kinase In Complex With Scios-469
pdb|3L8S|A Chain A, Human P38 Map Kinase In Complex With Cp-547632
pdb|3LFB|A Chain A, Human P38 Map Kinase In Complex With Rl98
pdb|3LFC|A Chain A, Human P38 Map Kinase In Complex With Rl99
pdb|3LFD|A Chain A, Human P38 Map Kinase In Complex With Rl113
pdb|3LFE|A Chain A, Human P38 Map Kinase In Complex With Rl116
pdb|3LFF|A Chain A, Human P38 Map Kinase In Complex With Rl166
pdb|3PG3|A Chain A, Human P38 Map Kinase In Complex With Rl182
Length = 360
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLRN--LSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ ++++ L+ + + + I
Sbjct: 76 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKSQKLTDDHVQFLIYQI 134
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ GL TD + + + Y
Sbjct: 135 LRGLKYIH---SADIIHRDLKPSNLAVNEDSE--LKILDFGLCRHTDDEMTGYVATRWYR 189
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 190 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 71/155 (45%), Gaps = 26/155 (16%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL----RNLSWERRRKVAIGIAKALRFLH 795
HPNIV+L E +++ E+ G + V+ R L+ + + V AL +LH
Sbjct: 93 HPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLH 152
Query: 796 FHCSPSVVAGDVSPGKVI--VDGKDEPHLRLSVPGLAYCTDSKSIN-------SSAYVAP 846
++ D+ G ++ +DG ++L+ G++ ++++I + ++AP
Sbjct: 153 ---DNKIIHRDLKAGNILFTLDGD----IKLADFGVS-AKNTRTIQRRDSFIGTPYWMAP 204
Query: 847 -----ETKESKDITEKGDIYGFGLILIDLLTGKSP 876
ET + + K D++ G+ LI++ + P
Sbjct: 205 EVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPP 239
>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
pdb|2PSQ|B Chain B, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
Length = 370
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 27/162 (16%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------NLSWERRR--------KVA 784
H NI+ L G C + Y++ EY L E LR S++ R K
Sbjct: 146 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 205
Query: 785 IGIAKAL-RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----KSI 838
+ L R + + S + D++ V+V + ++++ GLA ++ K+
Sbjct: 206 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNV--MKIADFGLARDINNIDYYKKTT 263
Query: 839 NSS---AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
N ++APE + T + D++ FG+++ ++ T G SP
Sbjct: 264 NGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSP 305
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 515 KKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNH 574
+ L S++ +N+L +MP L QL+L+ NQL R+ SL ++ + N
Sbjct: 170 ENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNP 229
Query: 575 FHGSLPST---GAFLAINATAVAGNDLCGGDSTSGLP 608
+ S P +L N+ G+ C G SG P
Sbjct: 230 WDCSCPRIDYLSRWLNKNSQKEQGSAKCSG---SGKP 263
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 258 FLYQNKLTGSIPKSIL-GLKSLVSFDLSDNYLSGEIPEEVIQ-LQNLEILHLFSNNFTGK 315
F + + IP ++L +++L +L N E+P + L+NLE + SN
Sbjct: 128 FRFTTRRLTHIPANLLTDMRNLSHLELRANI--EEMPSHLFDDLENLESIEFGSNKLRQM 185
Query: 316 IPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTN 358
MPKL+ L L SNQ + +L I L TN
Sbjct: 186 PRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 84/184 (45%), Gaps = 27/184 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKL--IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS 769
V K+++V T ++ G L H NI+ G + + A +V ++ EG L
Sbjct: 49 VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLA-IVTQWCEGSSLY 107
Query: 770 EVLR--NLSWERRRKVAIG--IAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS 825
L +E ++ + I A+ + +LH + S++ D+ + + ++ +++
Sbjct: 108 HHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFL--HEDNTVKIG 162
Query: 826 VPGLAYCTDSKSINSSA----------YVAPET---KESKDITEKGDIYGFGLILIDLLT 872
GLA T+ + S ++APE ++S + + D+Y FG++L +L+T
Sbjct: 163 DFGLA--TEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMT 220
Query: 873 GKSP 876
G+ P
Sbjct: 221 GQLP 224
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Query: 137 LDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSI 196
LDLS N L SF L+VLDL + + +++ L L N +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 197 PREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG-QIPPSFGNLSNLR 255
L +L+ + NL+ IG L +L L++ +N + ++P F NL+NL
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 256 YLFLYQNKL 264
+L L NK+
Sbjct: 153 HLDLSSNKI 161
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 94/254 (37%), Gaps = 37/254 (14%)
Query: 387 KIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSL 446
KIP++L S + + L N L S F P + LD+S ++ ++ L
Sbjct: 21 KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 447 QMLNLAGNNFSGKLPDSF-GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFG 505
L L GN +F G L+ L E + G L L +L ++ N +
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 506 -DIPEELSSCKKLVSLDLSNNQLSGHIPASLS---EMPV--------------------- 540
+PE S+ L LDLS+N++ L +MP+
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198
Query: 541 ---LGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPST---GAFLAINATAVA 594
L +L L NQL R+ SL ++ + N + S P +L N+
Sbjct: 199 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 258
Query: 595 GNDLCGGDSTSGLP 608
G+ C G SG P
Sbjct: 259 GSAKCSG---SGKP 269
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 83/184 (45%), Gaps = 27/184 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKL--IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS 769
V K+++V T ++ G L H NI+ G + A +V ++ EG L
Sbjct: 49 VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQLA-IVTQWCEGSSLY 107
Query: 770 EVLR--NLSWERRRKVAIG--IAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS 825
L +E ++ + I A+ + +LH + S++ D+ + + ++ +++
Sbjct: 108 HHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFL--HEDNTVKIG 162
Query: 826 VPGLAYCTDSKSINSSA----------YVAPET---KESKDITEKGDIYGFGLILIDLLT 872
GLA T+ + S ++APE ++S + + D+Y FG++L +L+T
Sbjct: 163 DFGLA--TEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMT 220
Query: 873 GKSP 876
G+ P
Sbjct: 221 GQLP 224
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Query: 137 LDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSI 196
LDLS N L SF L+VLDL + + +++ L L N +
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 197 PREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG-QIPPSFGNLSNLR 255
L +L+ + NL+ IG L +L L++ +N + ++P F NL+NL
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 153
Query: 256 YLFLYQNKL 264
+L L NK+
Sbjct: 154 HLDLSSNKI 162
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 94/254 (37%), Gaps = 37/254 (14%)
Query: 387 KIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSL 446
KIP++L S + + L N L S F P + LD+S ++ ++ L
Sbjct: 22 KIPDNLPF--STKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 79
Query: 447 QMLNLAGNNFSGKLPDSF-GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFG 505
L L GN +F G L+ L E + G L L +L ++ N +
Sbjct: 80 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 139
Query: 506 -DIPEELSSCKKLVSLDLSNNQLSGHIPASLS---EMPV--------------------- 540
+PE S+ L LDLS+N++ L +MP+
Sbjct: 140 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 199
Query: 541 ---LGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPST---GAFLAINATAVA 594
L +L L NQL R+ SL ++ + N + S P +L N+
Sbjct: 200 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 259
Query: 595 GNDLCGGDSTSGLP 608
G+ C G SG P
Sbjct: 260 GSAKCSG---SGKP 270
>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
pdb|3GC9|B Chain B, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
Length = 370
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 11/117 (9%)
Query: 765 GKELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL 822
G +L+ ++++ LS E + + + + L+++H S ++ D+ P V V+ E L
Sbjct: 116 GADLNNIVKSQALSDEHVQFLVYQLLRGLKYIH---SAGIIHRDLKPSNVAVNEDSE--L 170
Query: 823 RLSVPGLAYCTDSK---SINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKS 875
R+ GLA D + + + Y APE + + DI+ G I+ +LL GK+
Sbjct: 171 RILDFGLARQADEEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGKA 227
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Query: 137 LDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSI 196
LDLS N L SF L+VLDL + + +++ L L N +
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 197 PREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG-QIPPSFGNLSNLR 255
L +L+ + NL+ IG L +L L++ +N + ++P F NL+NL
Sbjct: 95 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 154
Query: 256 YLFLYQNKL 264
+L L NK+
Sbjct: 155 HLDLSSNKI 163
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 94/254 (37%), Gaps = 37/254 (14%)
Query: 387 KIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSL 446
KIP++L S + + L N L S F P + LD+S ++ ++ L
Sbjct: 23 KIPDNLPF--STKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 80
Query: 447 QMLNLAGNNFSGKLPDSF-GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFG 505
L L GN +F G L+ L E + G L L +L ++ N +
Sbjct: 81 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 140
Query: 506 -DIPEELSSCKKLVSLDLSNNQLSGHIPASLS---EMPV--------------------- 540
+PE S+ L LDLS+N++ L +MP+
Sbjct: 141 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 200
Query: 541 ---LGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPST---GAFLAINATAVA 594
L +L L NQL R+ SL ++ + N + S P +L N+
Sbjct: 201 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 260
Query: 595 GNDLCGGDSTSGLP 608
G+ C G SG P
Sbjct: 261 GSAKCSG---SGKP 271
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Query: 137 LDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSI 196
LDLS N L SF L+VLDL + + +++ L L N +
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 197 PREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG-QIPPSFGNLSNLR 255
L +L+ + NL+ IG L +L L++ +N + ++P F NL+NL
Sbjct: 95 LGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 154
Query: 256 YLFLYQNKL 264
+L L NK+
Sbjct: 155 HLDLSSNKI 163
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 94/254 (37%), Gaps = 37/254 (14%)
Query: 387 KIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSL 446
KIP++L S + + L N L S F P + LD+S ++ ++ L
Sbjct: 23 KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 80
Query: 447 QMLNLAGNNFSGKLPDSF-GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFG 505
L L GN +F G L+ L E + G L L +L ++ N +
Sbjct: 81 STLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQS 140
Query: 506 -DIPEELSSCKKLVSLDLSNNQLSGHIPASLS---EMPV--------------------- 540
+PE S+ L LDLS+N++ L +MP+
Sbjct: 141 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 200
Query: 541 ---LGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPST---GAFLAINATAVA 594
L +L L NQL R+ SL ++ + N + S P +L N+
Sbjct: 201 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 260
Query: 595 GNDLCGGDSTSGLP 608
G+ C G SG P
Sbjct: 261 GSAKCSG---SGKP 271
>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map
Kinase Jnk1
Length = 370
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 18/150 (12%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR-NLSWERRRKVAIGIA 788
K + H NI+ L V +K+ Y+V E ++ LS+V++ L ER + +
Sbjct: 78 KCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDAN-LSQVIQMELDHERMSYLLYQML 136
Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK-----SINSSAY 843
++ LH S ++ D+ P ++V K + L++ GLA + + + Y
Sbjct: 137 CGIKHLH---SAGIIHRDLKPSNIVV--KSDATLKILDFGLARTAGTSFMMTPYVVTRYY 191
Query: 844 VAPETKESKDITEKGDIYGFGLILIDLLTG 873
APE E DI+ G I+ +++ G
Sbjct: 192 RAPEVILGMGYKENVDIWSVGCIMGEMIKG 221
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 27/224 (12%)
Query: 371 SGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGN 430
+ ++ KL + N++ P+ L + L+ N LS F P + L +S N
Sbjct: 92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 151
Query: 431 DLSGRIGEQKWE-MTSLQMLNLAGNNFS----GKLPDSFGSD-------------QLENL 472
+L RI + ++ TSLQ L L+ N + +P F ++ +E L
Sbjct: 152 NLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEEL 210
Query: 473 DLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIP 532
D S N S + R + EL LK+ N L L + LV +DLS N+L +
Sbjct: 211 DASHN--SINVVRGPVNV-ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY 265
Query: 533 ASLSEMPVLGQLDLSENQLSGKIPQTLGR-VASLVQVNISHNHF 575
+M L +L +S N+L G+ + +L +++SHNH
Sbjct: 266 HPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHL 307
>pdb|2UV2|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To
4-(4-(
5-Cyclopropyl-1h-Pyrazol-3-Ylamino)-Quinazolin-2-
Ylamino)- Phenyl)-Acetonitrile
Length = 287
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 67/155 (43%), Gaps = 25/155 (16%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL----RNLSWERRRKVAIGIAKALRFLH 795
HPNIV+L E +++ E+ G + V+ R L+ + + V AL +LH
Sbjct: 66 HPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLH 125
Query: 796 FHCSPSVVAGDVSPGKVI--VDGKDEPHLRLSVPGLAYCTDSKSIN-------SSAYVAP 846
++ D+ G ++ +DG ++L+ G++ I + ++AP
Sbjct: 126 ---DNKIIHRDLKAGNILFTLDGD----IKLADFGVSAKNTRTXIQRRDSFIGTPYWMAP 178
Query: 847 -----ETKESKDITEKGDIYGFGLILIDLLTGKSP 876
ET + + K D++ G+ LI++ + P
Sbjct: 179 EVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPP 213
>pdb|3E3B|X Chain X, Crystal Structure Of Catalytic Subunit Of Human Protein
Kinase Ck2alpha Prime With A Potent Indazole-Derivative
Inhibitor
Length = 339
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 12/143 (8%)
Query: 742 NIVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCS 799
NI++L + K LV+EYI + ++ + L+ R + KAL + H S
Sbjct: 99 NIIKLIDTVKDPVSKTPALVFEYINNTDFKQLYQILTDFDIRFYMYELLKALDYCH---S 155
Query: 800 PSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSIN----SSAYVAPETKESKDI 854
++ DV P V++D + + LRL GLA + ++ N S + PE +
Sbjct: 156 KGIMHRDVKPHNVMIDHQ-QKKLRLIDWGLAEFYHPAQEYNVRVASRYFKGPELLVDYQM 214
Query: 855 TEKG-DIYGFGLILIDLLTGKSP 876
+ D++ G +L ++ + P
Sbjct: 215 YDYSLDMWSLGCMLASMIFRREP 237
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 843 YVAPETKESKD---ITEKGDIYGFGLILIDLLTGKSP 876
++APE +D + + D+Y FG++L +L+TG+ P
Sbjct: 174 WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLP 210
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 843 YVAPETKESKD---ITEKGDIYGFGLILIDLLTGKSP 876
++APE +D + + D+Y FG++L +L+TG+ P
Sbjct: 172 WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLP 208
>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A
Natural Jnk1 Inhibitor
Length = 379
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 16/149 (10%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK 789
K + H NI+ L V +K+ Y+V E ++ + L ER + +
Sbjct: 78 KCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLC 137
Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK-----SINSSAYV 844
++ LH S ++ D+ P ++V K + L++ GLA + + + Y
Sbjct: 138 GIKHLH---SAGIIHRDLKPSNIVV--KSDCTLKILDFGLARTAGTSFMMTPEVVTRYYR 192
Query: 845 APETKESKDITEKGDIYGFGLILIDLLTG 873
APE E DI+ G I+ +++ G
Sbjct: 193 APEVILGMGYKENVDIWSVGCIMGEMIKG 221
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 843 YVAPETKESKD---ITEKGDIYGFGLILIDLLTGKSP 876
++APE +D + + D+Y FG++L +L+TG+ P
Sbjct: 172 WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLP 208
>pdb|3OFM|A Chain A, Structure Of A Human Ck2alpha Prime, The Paralog Isoform
Of The Catalytic Subunit Of Protein Kinase Ck2 From Homo
Sapiens
Length = 350
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 12/143 (8%)
Query: 742 NIVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCS 799
NI++L + K LV+EYI + ++ + L+ R + KAL + H S
Sbjct: 94 NIIKLIDTVKDPVSKTPALVFEYINNTDFKQLYQILTDFDIRFYMYELLKALDYCH---S 150
Query: 800 PSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSIN----SSAYVAPETKESKDI 854
++ DV P V++D + + LRL GLA + ++ N S + PE +
Sbjct: 151 KGIMHRDVKPHNVMIDHQ-QKKLRLIDWGLAEFYHPAQEYNVRVASRYFKGPELLVDYQM 209
Query: 855 TEKG-DIYGFGLILIDLLTGKSP 876
+ D++ G +L ++ + P
Sbjct: 210 YDYSLDMWSLGCMLASMIFRREP 232
>pdb|3V6K|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases
pdb|3V6K|J Chain J, Replication Of N2,3-Ethenoguanine By Dna Polymerases
Length = 347
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 27/151 (17%)
Query: 139 LSNNMLSGKIPEEIGSFSGLKVLD------LGGNVLVGEIPLSISNITSLQIFTLASNQL 192
+S N + KI ++ +G+KV+D L + + ++P I NIT+ ++ L N+L
Sbjct: 149 ISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVP-GIGNITAEKLKKLGINKL 207
Query: 193 IGSIPREIGQLRNL----KWIYL------GYNN-LSGEIPKEIGDLTSLNHLDLVYNNLT 241
+ ++ E +L+ + K YL YN + + K IG + ++ NL
Sbjct: 208 VDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNS---RNLE 264
Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI 272
P F + Y KL IPK+I
Sbjct: 265 EIKPYLFRAIEESYY------KLDKRIPKAI 289
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 70/155 (45%), Gaps = 26/155 (16%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL----RNLSWERRRKVAIGIAKALRFLH 795
HPNIV+L E +++ E+ G + V+ R L+ + + V AL +LH
Sbjct: 93 HPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLH 152
Query: 796 FHCSPSVVAGDVSPGKVI--VDGKDEPHLRLSVPGLAYCTDSKSIN-------SSAYVAP 846
++ D+ G ++ +DG ++L+ G++ +++ I + ++AP
Sbjct: 153 ---DNKIIHRDLKAGNILFTLDGD----IKLADFGVS-AKNTRXIQRRDXFIGTPYWMAP 204
Query: 847 -----ETKESKDITEKGDIYGFGLILIDLLTGKSP 876
ET + + K D++ G+ LI++ + P
Sbjct: 205 EVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPP 239
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 39/172 (22%)
Query: 736 KLIMHPNIVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRNLSWERRRKVAI-----GIA 788
K + H NIV+ GVC S + L+ EY+ L + L+ ER + + I
Sbjct: 67 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQIC 125
Query: 789 KAL------RFLHFHCSPS---------VVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT 833
K + R++H + + V GD KV+ +D+ + ++ PG +
Sbjct: 126 KGMEYLGTKRYIHRNLATRNILVENENRVKIGDFGLTKVL--PQDKEYYKVKEPGES--- 180
Query: 834 DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT----GKSPADADF 881
+ APE+ + D++ FG++L +L T KSP A+F
Sbjct: 181 ------PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP-AEF 225
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 843 YVAPETKESKD---ITEKGDIYGFGLILIDLLTGKSP 876
++APE +D + + D+Y FG++L +L+TG+ P
Sbjct: 177 WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLP 213
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 843 YVAPETKESKD---ITEKGDIYGFGLILIDLLTGKSP 876
++APE +D + + D+Y FG++L +L+TG+ P
Sbjct: 199 WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLP 235
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 843 YVAPETKESKD---ITEKGDIYGFGLILIDLLTGKSP 876
++APE +D + + D+Y FG++L +L+TG+ P
Sbjct: 192 WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLP 228
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 843 YVAPETKESKD---ITEKGDIYGFGLILIDLLTGKSP 876
++APE +D + + D+Y FG++L +L+TG+ P
Sbjct: 172 WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLP 208
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 70/155 (45%), Gaps = 26/155 (16%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL----RNLSWERRRKVAIGIAKALRFLH 795
HPNIV+L E +++ E+ G + V+ R L+ + + V AL +LH
Sbjct: 93 HPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLH 152
Query: 796 FHCSPSVVAGDVSPGKVI--VDGKDEPHLRLSVPGLAYCTDSKSIN-------SSAYVAP 846
++ D+ G ++ +DG ++L+ G++ +++ I + ++AP
Sbjct: 153 ---DNKIIHRDLKAGNILFTLDGD----IKLADFGVS-AKNTRXIQRRDSFIGTPYWMAP 204
Query: 847 -----ETKESKDITEKGDIYGFGLILIDLLTGKSP 876
ET + + K D++ G+ LI++ + P
Sbjct: 205 EVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPP 239
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 843 YVAPETKESKD---ITEKGDIYGFGLILIDLLTGKSP 876
++APE +D + + D+Y FG++L +L+TG+ P
Sbjct: 177 WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLP 213
>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
pdb|3GC8|B Chain B, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
Length = 370
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 787 IAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAY 843
+ + LR L + S ++ D+ P V V+ E LR+ GLA D + + + Y
Sbjct: 137 VYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDSE--LRILDFGLARQADEEMTGYVATRWY 194
Query: 844 VAPETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LL GK+
Sbjct: 195 RAPEIMLNWMHYNQTVDIWSVGCIMAELLQGKA 227
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKAL- 791
KL HPNI+ L G C YL EY L + LR L + +A A L
Sbjct: 71 KLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLS 130
Query: 792 --RFLHFHCSPSVVAGDVSPG 810
+ LHF A DV+ G
Sbjct: 131 SQQLLHF-------AADVARG 144
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 843 YVAPETKESKD---ITEKGDIYGFGLILIDLLTGKSP 876
++APE +D + + D+Y FG++L +L+TG+ P
Sbjct: 200 WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLP 236
>pdb|3PR4|A Chain A, Dpo4 Y12a Mutant Incorporating Dadp Opposite Template Dt
pdb|3PR5|B Chain B, Dpo4 Y12a Mutant Incorporating Adp Opposite Template Dt
Length = 341
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 27/151 (17%)
Query: 139 LSNNMLSGKIPEEIGSFSGLKVLD------LGGNVLVGEIPLSISNITSLQIFTLASNQL 192
+S N + KI ++ +G+KV+D L + + ++P I NIT+ ++ L N+L
Sbjct: 144 ISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVP-GIGNITAEKLKKLGINKL 202
Query: 193 IGSIPREIGQLRNL----KWIYL------GYNN-LSGEIPKEIGDLTSLNHLDLVYNNLT 241
+ ++ E +L+ + K YL YN + + K IG + ++ NL
Sbjct: 203 VDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNS---RNLE 259
Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI 272
P F + Y KL IPK+I
Sbjct: 260 EIKPYLFRAIEESYY------KLDKRIPKAI 284
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 843 YVAPETKESKD---ITEKGDIYGFGLILIDLLTGKSP 876
++APE +D + + D+Y FG++L +L+TG+ P
Sbjct: 200 WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLP 236
>pdb|2BQ3|A Chain A, Dna Adduct Bypass Polymerization By Sulfolobus
Solfataricus Dpo4. Analysis And Crystal Structures Of
Multiple Base- Pair Substitution And Frameshift Products
With The Adduct 1,N2-Ethenoguanine
pdb|2BQR|A Chain A, Dna Adduct Bypass Polymerization By Sulfolobus
Solfataricus Dpo4. Analysis And Crystal Structures Of
Multiple Base- Pair Substitution And Frameshift Products
With The Adduct 1,N2-Ethenoguanine
pdb|2BQU|A Chain A, Dna Adduct Bypass Polymerization By Sulfolobus
Solfataricus Dpo4. Analysis And Crystal Structures Of
Multiple Base- Pair Substitution And Frameshift Products
With The Adduct 1,N2-Ethenoguanine
pdb|2BR0|A Chain A, Dna Adduct Bypass Polymerization By Sulfolobus
Solfataricus Dpo4. Analysis And Crystal Structures Of
Multiple Base- Pair Substitution And Frameshift Products
With The Adduct 1,N2-Ethenoguanine
pdb|2C22|A Chain A, Efficient And High Fidelity Incorporation Of Dctp Opposite
7,8-Dihydro-8-Oxodeoxyguanosine By Sulfolobus
Solfataricus Dna Polymerase Dpo4
pdb|2C28|A Chain A, Efficient And High Fidelity Incorporation Of Dctp Opposite
7,8-Dihydro-8-Oxodeoxyguanosine By Sulfolobus
Solfataricus Dna Polymerase Dpo4
pdb|2C2D|A Chain A, Efficient And High Fidelity Incorporation Of Dctp Opposite
7,8-Dihydro-8-Oxodeoxyguanosine By Sulfolobus
Solfataricus Dna Polymerase Dpo4
pdb|2C2E|A Chain A, Efficient And High Fidelity Incorporation Of Dctp Opposite
7,8-Dihydro-8-Oxodeoxyguanosine By Sulfolobus
Solfataricus Dna Polymerase Dpo4
pdb|2C2R|A Chain A, Efficient And High Fidelity Incorporation Of Dctp Opposite
7,8-Dihydro-8-Oxodeoxyguanosine By Sulfolobus
Solfataricus Dna Polymerase Dpo4
pdb|2J6S|A Chain A, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, O6-Methylguanine Modified Dna, And Datp.
pdb|2J6T|A Chain A, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, O6-Methylguanine Modified Dna, And Datp.
pdb|2J6U|A Chain A, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, O6-methylguanine Modified Dna, And Dgtp.
pdb|2JEF|A Chain A, The Molecular Basis Of Selectivity Of Nucleotide
Triphosphate Incorporation Opposite O6-benzylguanine By
Sulfolobus Solfataricus Dna Polymerase Iv: Steady-state
And Pre-steady-state And X-ray Crystallography Of
Correct And Incorrect Pairing
pdb|2JEG|A Chain A, The Molecular Basis Of Selectivity Of Nucleoside
Triphosphate Incorporation Opposite O6-Benzylguanine By
Sulfolobus Solfataricus Dna Polymerase Iv: Steady-State
And Pre-Steady-State Kinetics And X-Ray Crystallography
Of Correct And Incorrect Pairing
pdb|2JEI|A Chain A, The Molecular Basis Of Selectivity Of Nucleoside
Triphosphate Incorporation Opposite O6-benzylguanine By
Sulfolobus Solfataricus Dna Polymerase Iv: Steady-state
And Pre-steady-state Kinetics And X-ray Crystallography
Of Correct And Incorrect Pairing
pdb|2JEJ|A Chain A, The Molecular Basis Of Selectivity Of Nucleoside
Triphosphate Incorporation Opposite O6-Benzylguanine By
Sulfolobus Solfataricus Dna Polymerase Iv: Steady-State
And Pre-Steady-State Kinetics And X-Ray Crystallography
Of Correct And Incorrect Pairing
pdb|2V9W|A Chain A, Complex Structure Of Sulfolobus Solfataricus Dpo4 And Dna
Duplex Containing A Hydrophobic Thymine Isostere 2,4-
Difluorotoluene Nucleotide In The Template Strand
pdb|2V9W|B Chain B, Complex Structure Of Sulfolobus Solfataricus Dpo4 And Dna
Duplex Containing A Hydrophobic Thymine Isostere 2,4-
Difluorotoluene Nucleotide In The Template Strand
pdb|2VA2|A Chain A, Complex Structure Of Sulfolobus Solfataricus Dpo4 And Dna
Duplex Containing A Hydrophobic Thymine Isostere 2,4-
Difluorotoluene Nucleotide In The Template Strand
pdb|2VA2|B Chain B, Complex Structure Of Sulfolobus Solfataricus Dpo4 And Dna
Duplex Containing A Hydrophobic Thymine Isostere 2,4-
Difluorotoluene Nucleotide In The Template Strand
pdb|2VA3|A Chain A, Complex Structure Of Sulfolobus Solfataricus Dpo4 And Dna
Duplex Containing A Hydrophobic Thymine Isostere 2,4-
Difluorotoluene Nucleotide In The Template Strand
pdb|2W8K|A Chain A, Y-Family Dna Polymerase Dpo4 Bypassing N2-Naphthyl-Guanine
Adduct In Syn Orientation
pdb|2W8L|A Chain A, Y-Family Dna Polymerase Dpo4 Bypassing N2-Naphthyl-Guanine
Adduct In Anti Orientation
pdb|2W9A|A Chain A, Ternary Complex Of Dpo4 Bound To N2,N2-Dimethyl-
Deoxyguanosine Modified Dna With Incoming Dgtp
pdb|2W9B|B Chain B, Binary Complex Of Dpo4 Bound To N2,N2-Dimethyl-
Deoxyguanosine Modified Dna
pdb|2W9C|B Chain B, Ternary Complex Of Dpo4 Bound To N2,N2-Dimethyl-
Deoxyguanosine Modified Dna With Incoming Dttp
pdb|2V4Q|A Chain A, Post-Insertion Complex Of The Y-Family Dna Polymerase Dpo4
With M1dg Containing Template Dna
pdb|2V4R|A Chain A, Non-Productive Complex Of The Y-Family Dna Polymerase Dpo4
With Dgtp Skipping The M1dg Adduct To Pair With The Next
Template Cytosine
pdb|2XC9|A Chain A, Binary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase And 1,N2-Ethenoguanine Modified Dna,
Magnesium Form
pdb|2XCA|A Chain A, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, 7,8-Dihydro-8-Oxodeoxyguanine Modified Dna
And Dgtp - Magnesium Form
pdb|2XCP|A Chain A, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, 7,8-Dihydro-8-Oxodeoxyguanine Modified Dna
And Dctp - Magnesium Form
pdb|2XCP|B Chain B, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, 7,8-Dihydro-8-Oxodeoxyguanine Modified Dna
And Dctp - Magnesium Form
pdb|4GC6|A Chain A, Crystal Structure Of Dpo4 In Complex With N-mc-damp
Opposite Dt
Length = 358
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 27/151 (17%)
Query: 139 LSNNMLSGKIPEEIGSFSGLKVLD------LGGNVLVGEIPLSISNITSLQIFTLASNQL 192
+S N + KI ++ +G+KV+D L + + ++P I NIT+ ++ L N+L
Sbjct: 150 ISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVP-GIGNITAEKLKKLGINKL 208
Query: 193 IGSIPREIGQLRNL----KWIYL------GYNN-LSGEIPKEIGDLTSLNHLDLVYNNLT 241
+ ++ E +L+ + K YL YN + + K IG + ++ NL
Sbjct: 209 VDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNS---RNLE 265
Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI 272
P F + Y KL IPK+I
Sbjct: 266 EIKPYLFRAIEESYY------KLDKRIPKAI 290
>pdb|1JXL|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A
Ternary Complex With Dna Substrates And An Incoming
Nucleotide
pdb|1N48|A Chain A, Y-Family Dna Polymerase Dpo4 In Complex With Dna
Containing Abasic Lesion
pdb|1N56|A Chain A, Y-Family Dna Polymerase Dpo4 In Complex With Dna
Containing Abasic Lesion
pdb|1N56|B Chain B, Y-Family Dna Polymerase Dpo4 In Complex With Dna
Containing Abasic Lesion
pdb|1RYR|A Chain A, Replication Of A Cis-Syn Thymine Dimer At Atomic
Resolution
pdb|1RYS|A Chain A, Replication Of A Cis-Syn Thymine Dimer At Atomic
Resolution
pdb|1RYS|B Chain B, Replication Of A Cis-Syn Thymine Dimer At Atomic
Resolution
pdb|1S0M|A Chain A, Crystal Structure Of A Benzo[a]pyrene Diol Epoxide Adduct
In A Ternary Complex With A Dna Polymerase
pdb|1S0M|B Chain B, Crystal Structure Of A Benzo[a]pyrene Diol Epoxide Adduct
In A Ternary Complex With A Dna Polymerase
pdb|1S0N|A Chain A, Snapshots Of Replication Through An Abasic Lesion:
Structural Basis For Base Substitution And Frameshift
pdb|1S0O|A Chain A, Snapshots Of Replication Through An Abasic Lesion:
Structural Basis For Base Substitution And Frameshift
pdb|1S0O|B Chain B, Snapshots Of Replication Through An Abasic Lesion:
Structural Basis For Base Substitution And Frameshift
pdb|1S10|A Chain A, Snapshots Of Replication Through An Abasic Lesion:
Structural Basis For Base Substitution And Frameshift
pdb|1S97|A Chain A, Dpo4 With Gt Mismatch
pdb|1S97|B Chain B, Dpo4 With Gt Mismatch
pdb|1S97|C Chain C, Dpo4 With Gt Mismatch
pdb|1S97|D Chain D, Dpo4 With Gt Mismatch
pdb|1S9F|A Chain A, Dpo With At Matched
pdb|1S9F|B Chain B, Dpo With At Matched
pdb|1S9F|C Chain C, Dpo With At Matched
pdb|1S9F|D Chain D, Dpo With At Matched
pdb|2IA6|A Chain A, Bypass Of Major Benzopyrene-Dg Adduct By Y-Family Dna
Polymerase With Unique Structural Gap
pdb|2IA6|B Chain B, Bypass Of Major Benzopyrene-Dg Adduct By Y-Family Dna
Polymerase With Unique Structural Gap
pdb|2IBK|A Chain A, Bypass Of Major Benzopyrene-Dg Adduct By Y-Family Dna
Polymerase With Unique Structural Gap
pdb|2RDJ|A Chain A, Snapshots Of A Y-family Dna Polymerase In Replication:
Dpo4 In Apo And Binary/ternary Complex Forms
pdb|2RDJ|B Chain B, Snapshots Of A Y-family Dna Polymerase In Replication:
Dpo4 In Apo And Binary/ternary Complex Forms
pdb|2R8G|A Chain A, Selectivity Of Nucleoside Triphosphate Incorporation
Opposite 1,N2-Propanodeoxyguanosine (Pdg) By The
Sulfolobus Solfataricus Dna Polymerase Dpo4 Polymerase
pdb|2R8H|A Chain A, Selectivity Of Nucleoside Triphosphate Incorporation
Opposite 1,N2- Propanodeoxyguanosine (Pdg) By The
Sulfolobus Solfataricus Dna Polymerase Dpo4 Polymerase
pdb|2R8I|A Chain A, Selectivity Of Nucleoside Triphosphate Incorporation
Opposite 1,N2-Propanodeoxyguanosine (Pdg) By The
Sulfolobus Solfataricus Dna Polymerase Dpo4 Polymerase
pdb|3FDS|A Chain A, Structural Insight Into Recruitment Of Translesion Dna
Polymerase Dpo4 To Sliding Clamp Pcna
pdb|3M9M|B Chain B, Crystal Structure Of Dpo4 In Complex With Dna Containing
The Major Cisplatin Lesion
pdb|3M9N|B Chain B, Crystal Structure Of Dpo4 In Complex With Dna Containing
The Major Cisplatin Lesion
pdb|3M9O|B Chain B, Crystal Structure Of Dpo4 In Complex With Dna Containing
The Major Cisplatin Lesion
Length = 352
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 27/151 (17%)
Query: 139 LSNNMLSGKIPEEIGSFSGLKVLD------LGGNVLVGEIPLSISNITSLQIFTLASNQL 192
+S N + KI ++ +G+KV+D L + + ++P I NIT+ ++ L N+L
Sbjct: 144 ISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVP-GIGNITAEKLKKLGINKL 202
Query: 193 IGSIPREIGQLRNL----KWIYL------GYNN-LSGEIPKEIGDLTSLNHLDLVYNNLT 241
+ ++ E +L+ + K YL YN + + K IG + ++ NL
Sbjct: 203 VDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNS---RNLE 259
Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI 272
P F + Y KL IPK+I
Sbjct: 260 EIKPYLFRAIEESYY------KLDKRIPKAI 284
>pdb|4GC7|A Chain A, Crystal Structure Of Dpo4 In Complex With S-mc-dadp
Opposite Dt
pdb|4GC7|B Chain B, Crystal Structure Of Dpo4 In Complex With S-mc-dadp
Opposite Dt
Length = 359
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 27/151 (17%)
Query: 139 LSNNMLSGKIPEEIGSFSGLKVLD------LGGNVLVGEIPLSISNITSLQIFTLASNQL 192
+S N + KI ++ +G+KV+D L + + ++P I NIT+ ++ L N+L
Sbjct: 151 ISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVP-GIGNITAEKLKKLGINKL 209
Query: 193 IGSIPREIGQLRNL----KWIYL------GYNN-LSGEIPKEIGDLTSLNHLDLVYNNLT 241
+ ++ E +L+ + K YL YN + + K IG + ++ NL
Sbjct: 210 VDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNS---RNLE 266
Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI 272
P F + Y KL IPK+I
Sbjct: 267 EIKPYLFRAIEESYY------KLDKRIPKAI 291
>pdb|2UVR|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8-
Oxog Containing Dna Template-Primer Constructs
pdb|2UVU|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8-
Oxog Containing Dna Template-Primer Constructs
Length = 358
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 27/151 (17%)
Query: 139 LSNNMLSGKIPEEIGSFSGLKVLD------LGGNVLVGEIPLSISNITSLQIFTLASNQL 192
+S N + KI ++ +G+KV+D L + + ++P I NIT+ ++ L N+L
Sbjct: 150 ISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVP-GIGNITAEKLKKLGINKL 208
Query: 193 IGSIPREIGQLRNL----KWIYL------GYNN-LSGEIPKEIGDLTSLNHLDLVYNNLT 241
+ ++ E +L+ + K YL YN + + K IG + ++ NL
Sbjct: 209 VDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNS---RNLE 265
Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI 272
P F + Y KL IPK+I
Sbjct: 266 EIKPYLFRAIEESYY------KLDKRIPKAI 290
>pdb|2ASD|A Chain A, Oxog-Modified Insertion Ternary Complex
pdb|2ASD|B Chain B, Oxog-Modified Insertion Ternary Complex
pdb|2ASJ|A Chain A, Oxog-Modified Preinsertion Binary Complex
pdb|2ASJ|B Chain B, Oxog-Modified Preinsertion Binary Complex
pdb|2ASL|A Chain A, Oxog-Modified Postinsertion Binary Complex
pdb|2ASL|B Chain B, Oxog-Modified Postinsertion Binary Complex
pdb|2ATL|A Chain A, Unmodified Insertion Ternary Complex
pdb|2ATL|B Chain B, Unmodified Insertion Ternary Complex
pdb|2AU0|A Chain A, Unmodified Preinsertion Binary Complex
pdb|2AU0|B Chain B, Unmodified Preinsertion Binary Complex
Length = 360
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 27/151 (17%)
Query: 139 LSNNMLSGKIPEEIGSFSGLKVLD------LGGNVLVGEIPLSISNITSLQIFTLASNQL 192
+S N + KI ++ +G+KV+D L + + ++P I NIT+ ++ L N+L
Sbjct: 152 ISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVP-GIGNITAEKLKKLGINKL 210
Query: 193 IGSIPREIGQLRNL----KWIYL------GYNN-LSGEIPKEIGDLTSLNHLDLVYNNLT 241
+ ++ E +L+ + K YL YN + + K IG + ++ NL
Sbjct: 211 VDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNS---RNLE 267
Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI 272
P F + Y KL IPK+I
Sbjct: 268 EIKPYLFRAIEESYY------KLDKRIPKAI 292
>pdb|2UVV|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8-
Oxog Containing Dna Template-Primer Constructs
pdb|2UVW|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8-
Oxog Containing Dna Template-Primer Constructs
Length = 358
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 27/151 (17%)
Query: 139 LSNNMLSGKIPEEIGSFSGLKVLD------LGGNVLVGEIPLSISNITSLQIFTLASNQL 192
+S N + KI ++ +G+KV+D L + + ++P I NIT+ ++ L N+L
Sbjct: 150 ISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVP-GIGNITAEKLKKLGINKL 208
Query: 193 IGSIPREIGQLRNL----KWIYL------GYNN-LSGEIPKEIGDLTSLNHLDLVYNNLT 241
+ ++ E +L+ + K YL YN + + K IG + ++ NL
Sbjct: 209 VDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNS---RNLE 265
Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI 272
P F + Y KL IPK+I
Sbjct: 266 EIKPYLFRAIEESYY------KLDKRIPKAI 290
>pdb|2RDI|A Chain A, Snapshots Of A Y-family Dna Polymerase In Replication:
Dpo4 In Apo And Binary/ternary Complex Forms
Length = 342
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 27/151 (17%)
Query: 139 LSNNMLSGKIPEEIGSFSGLKVLD------LGGNVLVGEIPLSISNITSLQIFTLASNQL 192
+S N + KI ++ +G+KV+D L + + ++P I NIT+ ++ L N+L
Sbjct: 144 ISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVP-GIGNITAEKLKKLGINKL 202
Query: 193 IGSIPREIGQLRNL----KWIYL------GYNN-LSGEIPKEIGDLTSLNHLDLVYNNLT 241
+ ++ E +L+ + K YL YN + + K IG + ++ NL
Sbjct: 203 VDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNS---RNLE 259
Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI 272
P F + Y KL IPK+I
Sbjct: 260 EIKPYLFRAIEESYY------KLDKRIPKAI 284
>pdb|3V6H|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases
pdb|3V6H|B Chain B, Replication Of N2,3-Ethenoguanine By Dna Polymerases
pdb|3V6J|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases
pdb|3V6J|J Chain J, Replication Of N2,3-Ethenoguanine By Dna Polymerases
Length = 348
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 27/151 (17%)
Query: 139 LSNNMLSGKIPEEIGSFSGLKVLD------LGGNVLVGEIPLSISNITSLQIFTLASNQL 192
+S N + KI ++ +G+KV+D L + + ++P I NIT+ ++ L N+L
Sbjct: 150 ISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVP-GIGNITAEKLKKLGINKL 208
Query: 193 IGSIPREIGQLRNL----KWIYL------GYNN-LSGEIPKEIGDLTSLNHLDLVYNNLT 241
+ ++ E +L+ + K YL YN + + K IG + ++ NL
Sbjct: 209 VDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNS---RNLE 265
Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI 272
P F + Y KL IPK+I
Sbjct: 266 EIKPYLFRAIEESYY------KLDKRIPKAI 290
>pdb|2W9B|A Chain A, Binary Complex Of Dpo4 Bound To N2,N2-Dimethyl-
Deoxyguanosine Modified Dna
pdb|2W9C|A Chain A, Ternary Complex Of Dpo4 Bound To N2,N2-Dimethyl-
Deoxyguanosine Modified Dna With Incoming Dttp
Length = 358
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 27/151 (17%)
Query: 139 LSNNMLSGKIPEEIGSFSGLKVLD------LGGNVLVGEIPLSISNITSLQIFTLASNQL 192
+S N + KI ++ +G+KV+D L + + ++P I NIT+ ++ L N+L
Sbjct: 150 ISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVP-GIGNITAEKLKKLGINKL 208
Query: 193 IGSIPREIGQLRNL----KWIYL------GYNN-LSGEIPKEIGDLTSLNHLDLVYNNLT 241
+ ++ E +L+ + K YL YN + + K IG + ++ NL
Sbjct: 209 VDTLSIEFDKLKGMIGEAKARYLISLARDEYNEPIRTRVRKSIGRIVTMKRNS---RNLE 265
Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI 272
P F + Y KL IPK+I
Sbjct: 266 EIKPYLFRAIEESYY------KLDKRIPKAI 290
>pdb|2AGO|A Chain A, Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide
Selection And Pyrophosphorolysis
pdb|2AGP|A Chain A, Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide
Selection And Pyrophosphorolysis
pdb|2AGP|B Chain B, Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide
Selection And Pyrophosphorolysis
pdb|2AGQ|A Chain A, Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide
Selection And Pyrophosphorolysis
pdb|3T5H|A Chain A, Ternary Complex Of Hne Adduct Modified Dna (5'-Cxg-3' Vs
13-Mer) With Dpo4 And Incoming Ddgt
pdb|3T5J|A Chain A, Ternary Complex Of Hne Adduct Modified Dna (5'-Txg-3' Vs
13-Mer) With Dpo4 And Incoming Ddtp
pdb|3T5K|A Chain A, Ternary Complex Of Hne Adduct Modified Dna (5'-Txg-3' Vs
14-Mer) With Dpo4 And Incoming Ddtp
pdb|3T5L|A Chain A, Ternary Complex Of Hne Adduct Modified Dna (5'-Cxg-3' Vs
14-Mer) With Dpo4 And Incoming Ddgt
Length = 341
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 27/151 (17%)
Query: 139 LSNNMLSGKIPEEIGSFSGLKVLD------LGGNVLVGEIPLSISNITSLQIFTLASNQL 192
+S N + KI ++ +G+KV+D L + + ++P I NIT+ ++ L N+L
Sbjct: 144 ISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVP-GIGNITAEKLKKLGINKL 202
Query: 193 IGSIPREIGQLRNL----KWIYL------GYNN-LSGEIPKEIGDLTSLNHLDLVYNNLT 241
+ ++ E +L+ + K YL YN + + K IG + ++ NL
Sbjct: 203 VDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNS---RNLE 259
Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI 272
P F + Y KL IPK+I
Sbjct: 260 EIKPYLFRAIEESYY------KLDKRIPKAI 284
>pdb|3PVX|A Chain A, Binary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-Fapy) With Dna Polymerase Iv
pdb|3PW0|A Chain A, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-Fapy) With Dna Polymerase Iv And Incoming Datp
pdb|3PW2|A Chain A, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-Fapy) With Dna Polymerase Iv And Incoming Dttp
pdb|3PW4|A Chain A, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-N7-Gua) With Dna Polymerase Iv And Incoming Datp
pdb|3PW5|A Chain A, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-N7-Gua) With Dna Polymerase Iv And Incoming Dttp
pdb|3PW7|A Chain A, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-N7-Gua) With Dna Polymerase Iv And Incoming Dctp
pdb|3PW7|E Chain E, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-N7-Gua) With Dna Polymerase Iv And Incoming Dctp
Length = 347
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 27/151 (17%)
Query: 139 LSNNMLSGKIPEEIGSFSGLKVLD------LGGNVLVGEIPLSISNITSLQIFTLASNQL 192
+S N + KI ++ +G+KV+D L + + ++P I NIT+ ++ L N+L
Sbjct: 150 ISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVP-GIGNITAEKLKKLGINKL 208
Query: 193 IGSIPREIGQLRNL----KWIYL------GYNN-LSGEIPKEIGDLTSLNHLDLVYNNLT 241
+ ++ E +L+ + K YL YN + + K IG + ++ NL
Sbjct: 209 VDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNS---RNLE 265
Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI 272
P F + Y KL IPK+I
Sbjct: 266 EIKPYLFRAIEESYY------KLDKRIPKAI 290
>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With
Quinoline-Thiadiazole- Thiophene Inhibitor
Length = 302
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 24/163 (14%)
Query: 726 SFWPDVSQFGKLIMHPNIVRLHGVC--RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKV 783
S W + + H +I++ G C + EK+ LV EY+ L + L S
Sbjct: 61 SGWKQEIDILRTLYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYLPRHS------- 113
Query: 784 AIGIAKALRFLHFHC-------SPSVVAGDVSPGKVIVDGK-----DEPHLRLSVP-GLA 830
IG+A+ L F C S + +++ V++D + L +VP G
Sbjct: 114 -IGLAQLLLFAQQICEGMAYLHSQHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHE 172
Query: 831 YCTDSKSINSSAY-VAPETKESKDITEKGDIYGFGLILIDLLT 872
Y + +S + APE + D++ FG+ L +LLT
Sbjct: 173 YYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLT 215
>pdb|3GII|A Chain A, Dpo4 Extension Ternary Complex With Disordered A Opposite
An Oxog In Anti Conformation
pdb|3GIJ|A Chain A, Dpo4 Extension Ternary Complex With Oxog(Syn)-A(Anti) And
Oxog(Anti)- A(Syn) Pairs
pdb|3GIJ|B Chain B, Dpo4 Extension Ternary Complex With Oxog(Syn)-A(Anti) And
Oxog(Anti)- A(Syn) Pairs
pdb|3GIK|A Chain A, Dpo4 Extension Ternary Complex With The Oxog(Anti)-C(Anti)
Pair
pdb|3GIL|A Chain A, Dpo4 Extension Ternary Complex With Oxog(Anti)-T(Anti)
Pair
pdb|3GIL|B Chain B, Dpo4 Extension Ternary Complex With Oxog(Anti)-T(Anti)
Pair
pdb|3GIM|A Chain A, Dpo4 Extension Ternary Complex With Oxog(Anti)-G(Syn) Pair
pdb|3KHG|A Chain A, Dpo4 Extension Ternary Complex With Misinserted A Opposite
The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHG|B Chain B, Dpo4 Extension Ternary Complex With Misinserted A Opposite
The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHH|A Chain A, Dpo4 Extension Ternary Complex With A C Base Opposite The
2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHH|B Chain B, Dpo4 Extension Ternary Complex With A C Base Opposite The
2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHL|A Chain A, Dpo4 Post-Extension Ternary Complex With Misinserted A
Opposite The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHL|B Chain B, Dpo4 Post-Extension Ternary Complex With Misinserted A
Opposite The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHR|A Chain A, Dpo4 Post-Extension Ternary Complex With The Correct C
Opposite The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHR|B Chain B, Dpo4 Post-Extension Ternary Complex With The Correct C
Opposite The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3RAQ|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer C
Base Opposite The 1-Methylguanine (Mg1) Lesion
pdb|3RAQ|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer C
Base Opposite The 1-Methylguanine (Mg1) Lesion
pdb|3RAX|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer T
Base Opposite The 1-Methylguanine (M1g) Lesion
pdb|3RAX|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer T
Base Opposite The 1-Methylguanine (M1g) Lesion
pdb|3RB0|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer G
Base Opposite The 1-Methylguanine (M1g) Lesion
pdb|3RB0|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer G
Base Opposite The 1-Methylguanine (M1g) Lesion
pdb|3RB3|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer A
Base Opposite The 1-Methylguanine (M1g) Lesion
pdb|3RB4|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer G
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RB4|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer G
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RB6|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer A
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RB6|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer A
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RBD|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer C
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RBD|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer C
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RBE|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer T
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RBE|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer T
Base Opposite The 3-Methylcytosine (M3c) Lesion
Length = 341
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 27/151 (17%)
Query: 139 LSNNMLSGKIPEEIGSFSGLKVLD------LGGNVLVGEIPLSISNITSLQIFTLASNQL 192
+S N + KI ++ +G+KV+D L + + ++P I NIT+ ++ L N+L
Sbjct: 144 ISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVP-GIGNITAEKLKKLGINKL 202
Query: 193 IGSIPREIGQLRNL----KWIYL------GYNN-LSGEIPKEIGDLTSLNHLDLVYNNLT 241
+ ++ E +L+ + K YL YN + + K IG + ++ NL
Sbjct: 203 VDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNS---RNLE 259
Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI 272
P F + Y KL IPK+I
Sbjct: 260 EIKPYLFRAIEESYY------KLDKRIPKAI 284
>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map
Kinase Jnk1
Length = 370
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 18/150 (12%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR-NLSWERRRKVAIGIA 788
K + H NI+ L V +K+ Y+V E ++ LS+V++ L ER + +
Sbjct: 78 KCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDAN-LSQVIQMELDHERMSYLLYQML 136
Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK-----SINSSAY 843
++ LH S ++ D+ P ++V K + L++ GLA + + + Y
Sbjct: 137 CGIKHLH---SAGIIHRDLKPSNIVV--KSDCTLKILDFGLARTAGTSFMMTPYVVTRYY 191
Query: 844 VAPETKESKDITEKGDIYGFGLILIDLLTG 873
APE E DI+ G I+ +++ G
Sbjct: 192 RAPEVILGMGYKENVDIWSVGCIMGEMIKG 221
>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 52/238 (21%), Positives = 92/238 (38%), Gaps = 56/238 (23%)
Query: 740 HPNIVRLHGVCRSEKAAYLV-YEYIEGKELSEVLRN---------------LSWERRRKV 783
H N+V L G C +V E+ + LS LR+ L+ E
Sbjct: 90 HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKDLYKDFLTLEHLIXY 149
Query: 784 AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA--------YCTDS 835
+ +AK + FL S + D++ +++ K+ +++ GLA Y
Sbjct: 150 SFQVAKGMEFL---ASRKXIHRDLAARNILLSEKNV--VKIXDFGLARDIYKDPDYVRKG 204
Query: 836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP-----ADADFGVHESIVE 889
+ ++APET + T + D++ FG++L ++ + G SP D +F + E
Sbjct: 205 DARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEF--XRRLKE 262
Query: 890 WARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTL 947
R D + P E+ L C G+P+ RP S++ + L
Sbjct: 263 GTRMRAPD-----YTTP--------------EMYQTMLDCWHGEPSQRPTFSELVEHL 301
>pdb|3QZ7|A Chain A, T-3 Ternary Complex Of Dpo4
pdb|3QZ8|A Chain A, Tt-4 Ternary Complex Of Dpo4
Length = 360
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 27/151 (17%)
Query: 139 LSNNMLSGKIPEEIGSFSGLKVLD------LGGNVLVGEIPLSISNITSLQIFTLASNQL 192
+S N + KI ++ +G+KV+D L + + ++P I NIT+ ++ L N+L
Sbjct: 144 ISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVP-GIGNITAEKLKKLGINKL 202
Query: 193 IGSIPREIGQLRNL----KWIYL------GYNN-LSGEIPKEIGDLTSLNHLDLVYNNLT 241
+ ++ E +L+ + K YL YN + + K IG + ++ NL
Sbjct: 203 VDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNS---RNLE 259
Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI 272
P F + Y KL IPK+I
Sbjct: 260 EIKPYLFRAIEESYY------KLDKRIPKAI 284
>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin
Antagonistically Control The Nuclear Shuttling Of Nfat4
Length = 371
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 16/149 (10%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK 789
K + H NI+ L V +K+ Y+V E ++ + L ER + +
Sbjct: 79 KCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLC 138
Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK-----SINSSAYV 844
++ LH S ++ D+ P ++V K + L++ GLA + + + Y
Sbjct: 139 GIKHLH---SAGIIHRDLKPSNIVV--KSDCTLKILDFGLARTAGTSFMMTPYVVTRYYR 193
Query: 845 APETKESKDITEKGDIYGFGLILIDLLTG 873
APE E DI+ G I+ +++ G
Sbjct: 194 APEVILGMGYKENVDIWSVGCIMGEMIKG 222
>pdb|2IMW|P Chain P, Mechanism Of Template-Independent Nucleotide Incorporation
Catalyzed By A Template-Dependent Dna Polymerase
Length = 348
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 27/151 (17%)
Query: 139 LSNNMLSGKIPEEIGSFSGLKVLD------LGGNVLVGEIPLSISNITSLQIFTLASNQL 192
+S N + KI ++ +G+KV+D L + + ++P I NIT+ ++ L N+L
Sbjct: 144 ISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVP-GIGNITAEKLKKLGINKL 202
Query: 193 IGSIPREIGQLRNL----KWIYL------GYNN-LSGEIPKEIGDLTSLNHLDLVYNNLT 241
+ ++ E +L+ + K YL YN + + K IG + ++ NL
Sbjct: 203 VDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNS---RNLE 259
Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI 272
P F + Y KL IPK+I
Sbjct: 260 EIKPYLFRAIEESYY------KLDKRIPKAI 284
>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By
The Scaffolding Protein Jip1 And Sp600125
pdb|1UKI|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By
The Scaffolding Protein Jip1 And Sp600125
Length = 369
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 16/149 (10%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK 789
K + H NI+ L V +K+ Y+V E ++ + L ER + +
Sbjct: 78 KCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLC 137
Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK-----SINSSAYV 844
++ LH S ++ D+ P ++V K + L++ GLA + + + Y
Sbjct: 138 GIKHLH---SAGIIHRDLKPSNIVV--KSDCTLKILDFGLARTAGTSFMMTPYVVTRYYR 192
Query: 845 APETKESKDITEKGDIYGFGLILIDLLTG 873
APE E DI+ G I+ +++ G
Sbjct: 193 APEVILGMGYKENVDIWSVGCIMGEMIKG 221
>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map
Kinase Jnk1
Length = 370
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 16/149 (10%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK 789
K + H NI+ L V +K+ Y+V E ++ + L ER + +
Sbjct: 78 KCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLC 137
Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK-----SINSSAYV 844
++ LH S ++ D+ P ++V K + L++ GLA + + + Y
Sbjct: 138 GIKHLH---SAGIIHRDLKPSNIVV--KSDCTLKILDFGLARTAGTSFMMTPYVVTRYYR 192
Query: 845 APETKESKDITEKGDIYGFGLILIDLLTG 873
APE E DI+ G I+ +++ G
Sbjct: 193 APEVILGMGYKENVDIWSVGCIMGEMIKG 221
>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With Atp
pdb|3HMO|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With The Inhibitor Staurosporine
pdb|3HMP|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With A Quinazolin Ligand Compound 4
Length = 342
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 47/237 (19%)
Query: 677 DEIISSTTEENLTSRGKK-------GVSSSYKVRSLANDMQ--FVVKKI--IDVNTITTS 725
D+ SS+ E ++ +G+ G S KV + N+ + + +K + + + T
Sbjct: 40 DDKASSSANECISVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLD 99
Query: 726 SFWPDVSQFGKLIMHPN-IVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLS----WERR 780
S+ +++ KL H + I+RL+ +++ Y+V E +L+ L+ WER+
Sbjct: 100 SYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKKKKSIDPWERK 158
Query: 781 RKVAIGIAKALRFLHFHCSPSVVAGDVSPGK-VIVDGKDEPHLRLSVPGLA--------- 830
+ +A+ +H H +V D+ P +IVDG L+L G+A
Sbjct: 159 SYWK-NMLEAVHTIHQH---GIVHSDLKPANFLIVDGM----LKLIDFGIANQMQPDTTS 210
Query: 831 YCTDSKSINSSAYVAPET-KESKDITEKG----------DIYGFGLILIDLLTGKSP 876
DS+ + + Y+ PE K+ E G D++ G IL + GK+P
Sbjct: 211 VVKDSQ-VGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTP 266
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 319 SLASMPK-----LQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDS-G 372
SLAS+P QVL L+ NQ + P + LT +DL N LT +P + D
Sbjct: 28 SLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLT 86
Query: 373 SLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNN 406
L +L L N L+ + KSL + L NN
Sbjct: 87 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 188 ASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS 247
S + + S+P I + +YL N ++ P LT L LDL N LT
Sbjct: 24 CSGKSLASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV 81
Query: 248 FGNLSNLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDN 286
F L+ L L L N+L SIP+ LKSL L +N
Sbjct: 82 FDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 120
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 444 TSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNK 502
T+ Q+L L N + P F QL LDL N+ + F +L++L QL ++ N+
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 503 L 503
L
Sbjct: 98 L 98
>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain
pdb|4GT4|B Chain B, Structure Of Unliganded, Inactive Ror2 Kinase Domain
Length = 308
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 32/162 (19%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---------ERRRKVAI--- 785
+ HPN+V L GV ++ +++ Y +L E L S +R K A+
Sbjct: 86 LQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPP 145
Query: 786 -------GIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL---AYCTD- 834
IA + +L H VV D++ V+V D+ ++++S GL Y D
Sbjct: 146 DFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLV--YDKLNVKISDLGLFREVYAADY 200
Query: 835 ----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT 872
S+ ++APE + DI+ +G++L ++ +
Sbjct: 201 YKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFS 242
>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2
pdb|3ZZW|B Chain B, Crystal Structure Of The Kinase Domain Of Ror2
Length = 289
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 32/162 (19%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---------ERRRKVAI--- 785
+ HPN+V L GV ++ +++ Y +L E L S +R K A+
Sbjct: 69 LQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPP 128
Query: 786 -------GIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL---AYCTD- 834
IA + +L H VV D++ V+V D+ ++++S GL Y D
Sbjct: 129 DFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLV--YDKLNVKISDLGLFREVYAADY 183
Query: 835 ----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT 872
S+ ++APE + DI+ +G++L ++ +
Sbjct: 184 YKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFS 225
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 319 SLASMPK-----LQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDS-G 372
SLAS+P QVL L+ NQ + P + LT +DL N LT +P + D
Sbjct: 20 SLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLT 78
Query: 373 SLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNN 406
L +L L N L+ + KSL + L NN
Sbjct: 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 188 ASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS 247
S + + S+P I + +YL N ++ P LT L LDL N LT
Sbjct: 16 CSGKSLASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV 73
Query: 248 FGNLSNLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDN 286
F L+ L L L N+L SIP+ LKSL L +N
Sbjct: 74 FDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 112
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 444 TSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNK 502
T+ Q+L L N + P F QL LDL N+ + F +L++L QL ++ N+
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 503 L 503
L
Sbjct: 90 L 90
>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil
pdb|3TKU|B Chain B, Mrck Beta In Complex With Fasudil
Length = 433
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 26/163 (15%)
Query: 743 IVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLS---WERRRKVAIG-IAKALRFLHFHC 798
I LH + E YLV +Y G +L +L E + IG + A+ +H
Sbjct: 152 ITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDKLPEDMARFYIGEMVLAIDSIH--- 208
Query: 799 SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY-CTDSKSINSSA------YVAPETKES 851
V D+ P V++D H+RL+ G D ++ SS Y++PE ++
Sbjct: 209 QLHYVHRDIKPDNVLLDVNG--HIRLADFGSCLKMNDDGTVQSSVAVGTPDYISPEILQA 266
Query: 852 KD-----ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVE 889
+ + D + G+ + ++L G++P A ES+VE
Sbjct: 267 MEDGMGKYGPECDWWSLGVCMYEMLYGETPFYA-----ESLVE 304
>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin
Antagonistically Control The Nuclear Shuttling Of Nfat4
Length = 386
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 16/149 (10%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK 789
K + H NI+ L V +K+ Y+V E ++ + L ER + +
Sbjct: 80 KCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLC 139
Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS-----INSSAYV 844
++ LH S ++ D+ P ++V K + L++ GLA + + + Y
Sbjct: 140 GIKHLH---SAGIIHRDLKPSNIVV--KSDCTLKILDFGLARTAGTSFMMVPFVVTRYYR 194
Query: 845 APETKESKDITEKGDIYGFGLILIDLLTG 873
APE E DI+ G I+ +++ G
Sbjct: 195 APEVILGMGYKENVDIWSVGCIMGEMIKG 223
>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1
Catalytic Domain Apo Form
Length = 390
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 47/237 (19%)
Query: 677 DEIISSTTEENLTSRGKK-------GVSSSYKVRSLANDMQ--FVVKKI--IDVNTITTS 725
D+ SS+ E ++ +G+ G S KV + N+ + + +K + + + T
Sbjct: 40 DDKASSSANECISVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLD 99
Query: 726 SFWPDVSQFGKLIMHPN-IVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLS----WERR 780
S+ +++ KL H + I+RL+ +++ Y+V E +L+ L+ WER+
Sbjct: 100 SYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKKKKSIDPWERK 158
Query: 781 RKVAIGIAKALRFLHFHCSPSVVAGDVSPGK-VIVDGKDEPHLRLSVPGLA--------- 830
+ +A+ +H H +V D+ P +IVDG L+L G+A
Sbjct: 159 SYWK-NMLEAVHTIHQH---GIVHSDLKPANFLIVDGM----LKLIDFGIANQMQPDTTS 210
Query: 831 YCTDSKSINSSAYVAPET-KESKDITEKG----------DIYGFGLILIDLLTGKSP 876
DS+ + + Y+ PE K+ E G D++ G IL + GK+P
Sbjct: 211 VVKDSQ-VGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTP 266
>pdb|2ZMD|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain T686a
Mutant In Complex With Sp600125 Inhibitor
Length = 390
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 47/237 (19%)
Query: 677 DEIISSTTEENLTSRGKK-------GVSSSYKVRSLANDMQ--FVVKKI--IDVNTITTS 725
D+ SS+ E ++ +G+ G S KV + N+ + + +K + + + T
Sbjct: 40 DDKASSSANECISVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLD 99
Query: 726 SFWPDVSQFGKLIMHPN-IVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLS----WERR 780
S+ +++ KL H + I+RL+ +++ Y+V E +L+ L+ WER+
Sbjct: 100 SYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKKKKSIDPWERK 158
Query: 781 RKVAIGIAKALRFLHFHCSPSVVAGDVSPGK-VIVDGKDEPHLRLSVPGLA--------- 830
+ +A+ +H H +V D+ P +IVDG L+L G+A
Sbjct: 159 SYWK-NMLEAVHTIHQH---GIVHSDLKPANFLIVDGM----LKLIDFGIANQMQPDTTS 210
Query: 831 YCTDSKSINSSAYVAPET-KESKDITEKG----------DIYGFGLILIDLLTGKSP 876
DS+ + + Y+ PE K+ E G D++ G IL + GK+P
Sbjct: 211 VVKDSQ-VGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTP 266
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 838 INSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSP 876
+ + ++APE E + K DI+ FG+ I+L TG +P
Sbjct: 182 VGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAP 221
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 38/97 (39%), Gaps = 13/97 (13%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKAL- 791
KL HPNI+ L G C YL EY L + LR L + +A A L
Sbjct: 78 KLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLS 137
Query: 792 --RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSV 826
+ LHF A DV+ G + K H L+
Sbjct: 138 SQQLLHF-------AADVARGMDYLSQKQFIHRNLAA 167
>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-1,2,2-trimethyl-propyl)-amide
pdb|4HVG|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-2-hydroxy-1,2-dimethyl-propyl)- Amide
pdb|4HVH|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-2-hydroxy-1,2-dimethyl-propyl
pdb|4HVI|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-1-methyl-2-oxo-2-piperidin-1-yl- Ethyl)-amide
Length = 314
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 20/145 (13%)
Query: 743 IVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHF 796
IV+ GV ++ LV EY+ L + L+ L R + I K + +L
Sbjct: 73 IVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLG- 131
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---------YCTDSKSINSSAYVAPE 847
S V D++ ++V+ E H++++ GLA Y + + APE
Sbjct: 132 --SRRCVHRDLAARNILVE--SEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPE 187
Query: 848 TKESKDITEKGDIYGFGLILIDLLT 872
+ + + D++ FG++L +L T
Sbjct: 188 SLSDNIFSRQSDVWSFGVVLYELFT 212
>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site
Inhibitor Showing High Selectivity Within The Janus
Kinase Family
Length = 315
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 20/145 (13%)
Query: 743 IVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHF 796
IV+ GV ++ LV EY+ L + L+ L R + I K + +L
Sbjct: 74 IVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLG- 132
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---------YCTDSKSINSSAYVAPE 847
S V D++ ++V+ E H++++ GLA Y + + APE
Sbjct: 133 --SRRCVHRDLAARNILVE--SEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPE 188
Query: 848 TKESKDITEKGDIYGFGLILIDLLT 872
+ + + D++ FG++L +L T
Sbjct: 189 SLSDNIFSRQSDVWSFGVVLYELFT 213
>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1
pdb|3QFV|B Chain B, Mrck Beta In Complex With Tpca-1
Length = 415
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 26/163 (15%)
Query: 743 IVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLS---WERRRKVAIG-IAKALRFLHFHC 798
I LH + E YLV +Y G +L +L E + IG + A+ +H
Sbjct: 136 ITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDKLPEDMARFYIGEMVLAIDSIH--- 192
Query: 799 SPSVVAGDVSPGKVIVDGKDEPHLRLSVPG-LAYCTDSKSINSSA------YVAPETKES 851
V D+ P V++D H+RL+ G D ++ SS Y++PE ++
Sbjct: 193 QLHYVHRDIKPDNVLLDVNG--HIRLADFGSCLKMNDDGTVQSSVAVGTPDYISPEILQA 250
Query: 852 KD-----ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVE 889
+ + D + G+ + ++L G++P A ES+VE
Sbjct: 251 MEDGMGKYGPECDWWSLGVCMYEMLYGETPFYA-----ESLVE 288
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 838 INSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSP 876
+ + ++APE E + K DI+ FG+ I+L TG +P
Sbjct: 187 VGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAP 226
>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 11 (p38 Beta) In Complex With Nilotinib
Length = 348
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 11/117 (9%)
Query: 765 GKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL 822
G +L+ +++ LS E + + + + L+++H S ++ D+ P V V+ ++ L
Sbjct: 108 GADLNNIVKCQALSDEHVQFLVYQLLRGLKYIH---SAGIIHRDLKPSNVAVN--EDCEL 162
Query: 823 RLSVPGLAYCTDSK---SINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKS 875
R+ GLA D + + + Y APE + + DI+ G I+ +LL GK+
Sbjct: 163 RILDFGLARQADEEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGKA 219
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN 774
KL HPNI+ L G C YL EY L + LR
Sbjct: 81 KLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRK 119
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 39/172 (22%)
Query: 736 KLIMHPNIVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRNLSWERRRKVAI-----GIA 788
K + H NIV+ GVC S + L+ EY+ L + L+ ER + + I
Sbjct: 66 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQIC 124
Query: 789 KAL------RFLHFHCSPS---------VVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT 833
K + R++H + V GD KV+ +D+ ++ PG +
Sbjct: 125 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL--PQDKEFFKVKEPGES--- 179
Query: 834 DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT----GKSPADADF 881
+ APE+ + D++ FG++L +L T KSP A+F
Sbjct: 180 ------PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP-AEF 224
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 444 TSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNK 502
T+ Q+L L N + P F QL LDL N+ + F +L++L QL ++ N+
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 503 L 503
L
Sbjct: 90 L 90
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 188 ASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS 247
S + + S+P I + +YL N ++ P LT L LDL N LT
Sbjct: 16 CSGKSLASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV 73
Query: 248 FGNLSNLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDN 286
F L+ L L L N+L SIP+ L+SL L +N
Sbjct: 74 FDKLTQLTQLSLNDNQL-KSIPRGAFDNLRSLTHIWLLNN 112
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 840 SSAYVAPETKESKD---ITEKGDIYGFGLILIDLLTGKSP 876
S ++APE +D + + D+Y +G++L +L+TG+ P
Sbjct: 197 SVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELP 236
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 27/166 (16%)
Query: 736 KLIMHPNIVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRF 793
K + H NIV+ GVC S + L+ EY+ L + L+ + K I K L++
Sbjct: 97 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ------KHKERIDHIKLLQY 150
Query: 794 -------LHFHCSPSVVAGDVSPGKVIVDGKDEPH-----LRLSVPGLAYCTDSKSINSS 841
+ + + + D++ ++V+ ++ L +P K S
Sbjct: 151 TSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 210
Query: 842 A--YVAPETKESKDITEKGDIYGFGLILIDLLT----GKSPADADF 881
+ APE+ + D++ FG++L +L T KSP A+F
Sbjct: 211 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP-AEF 255
>pdb|4F99|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9B|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9B|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9C|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Xl413
Length = 361
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 742 NIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPS 801
N++ + R + Y+E + ++L +LS++ R+ + + KAL+ +H
Sbjct: 81 NVMGVKYCFRKNDHVVIAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIH---QFG 137
Query: 802 VVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESK 852
+V DV P + + + + + + GLA T I +V E ++ +
Sbjct: 138 IVHRDVKPSNFLYNRRLKKYALVDF-GLAQGTHDTKIELLKFVQSEAQQER 187
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 27/166 (16%)
Query: 736 KLIMHPNIVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRF 793
K + H NIV+ GVC S + L+ EY+ L + L+ + K I K L++
Sbjct: 84 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ------KHKERIDHIKLLQY 137
Query: 794 -------LHFHCSPSVVAGDVSPGKVIVDGKDEPH-----LRLSVPGLAYCTDSKSINSS 841
+ + + + D++ ++V+ ++ L +P K S
Sbjct: 138 TSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 197
Query: 842 A--YVAPETKESKDITEKGDIYGFGLILIDLLT----GKSPADADF 881
+ APE+ + D++ FG++L +L T KSP A+F
Sbjct: 198 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP-AEF 242
>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In
Complex With P38 Map Kinase
Length = 360
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 76 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 134
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ E L++ LA TD + + + Y
Sbjct: 135 LRGLKYIH---SADIIHRDLKPSNLAVNEDCE--LKILDFYLARHTDDEMTGYVATRWYR 189
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 190 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6
Length = 302
Score = 30.4 bits (67), Expect = 5.3, Method: Composition-based stats.
Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 24/163 (14%)
Query: 726 SFWPDVSQFGKLIMHPNIVRLHGVC--RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKV 783
S W + + H +I++ G C + EK+ LV EY+ L + L S
Sbjct: 61 SGWKQEIDILRTLYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYLPRHS------- 113
Query: 784 AIGIAKALRFLHFHC-------SPSVVAGDVSPGKVIVDGK-----DEPHLRLSVP-GLA 830
IG+A+ L F C + + +++ V++D + L +VP G
Sbjct: 114 -IGLAQLLLFAQQICEGMAYLHAQHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHE 172
Query: 831 YCTDSKSINSSAY-VAPETKESKDITEKGDIYGFGLILIDLLT 872
Y + +S + APE + D++ FG+ L +LLT
Sbjct: 173 YYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLT 215
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 27/166 (16%)
Query: 736 KLIMHPNIVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRF 793
K + H NIV+ GVC S + L+ EY+ L + L+ + K I K L++
Sbjct: 84 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ------KHKERIDHIKLLQY 137
Query: 794 -------LHFHCSPSVVAGDVSPGKVIVDGKDEPH-----LRLSVPGLAYCTDSKSINSS 841
+ + + + D++ ++V+ ++ L +P K S
Sbjct: 138 TSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 197
Query: 842 A--YVAPETKESKDITEKGDIYGFGLILIDLLT----GKSPADADF 881
+ APE+ + D++ FG++L +L T KSP A+F
Sbjct: 198 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP-AEF 242
>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha
pdb|3OHT|B Chain B, Crystal Structure Of Salmo Salar P38alpha
Length = 389
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 12/125 (9%)
Query: 757 YLVYEYIEGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV 814
YLV ++ G +L+ +++ L+ + + + I + L+++H S ++ D+ P + V
Sbjct: 132 YLV-THLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAV 187
Query: 815 DGKDEPHLRLSVPGLAYCTDSK---SINSSAYVAPETKES-KDITEKGDIYGFGLILIDL 870
+ E L++ GLA TD + + + Y APE + DI+ G I+ +L
Sbjct: 188 NEDCE--LKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNMTVDIWSVGCIMAEL 245
Query: 871 LTGKS 875
LTG++
Sbjct: 246 LTGRT 250
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 27/166 (16%)
Query: 736 KLIMHPNIVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRF 793
K + H NIV+ GVC S + L+ EY+ L + L+ + K I K L++
Sbjct: 65 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ------KHKERIDHIKLLQY 118
Query: 794 -------LHFHCSPSVVAGDVSPGKVIVDGKDEPH-----LRLSVPGLAYCTDSKSINSS 841
+ + + + D++ ++V+ ++ L +P K S
Sbjct: 119 TSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 178
Query: 842 A--YVAPETKESKDITEKGDIYGFGLILIDLLT----GKSPADADF 881
+ APE+ + D++ FG++L +L T KSP A+F
Sbjct: 179 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP-AEF 223
>pdb|1Y7P|A Chain A, 1.9 A Crystal Structure Of A Protein Of Unknown Function
Af1403 From Archaeoglobus Fulgidus, Probable Metabolic
Regulator
pdb|1Y7P|B Chain B, 1.9 A Crystal Structure Of A Protein Of Unknown Function
Af1403 From Archaeoglobus Fulgidus, Probable Metabolic
Regulator
pdb|1Y7P|C Chain C, 1.9 A Crystal Structure Of A Protein Of Unknown Function
Af1403 From Archaeoglobus Fulgidus, Probable Metabolic
Regulator
Length = 223
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 128 IGSLSRLEILDLSNNMLSGKIPEEIGSF--SGLKVLDLGGNVLVGEIP 173
+ L R E+L L+ ++ GKI EE+ SG++V+ L + G +P
Sbjct: 140 VSRLHRAEVLVLAGGIMGGKITEEVKKLRKSGIRVISLS---MFGSVP 184
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 27/166 (16%)
Query: 736 KLIMHPNIVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRF 793
K + H NIV+ GVC S + L+ EY+ L + L+ + K I K L++
Sbjct: 64 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ------KHKERIDHIKLLQY 117
Query: 794 -------LHFHCSPSVVAGDVSPGKVIVDGKDEPH-----LRLSVPGLAYCTDSKSINSS 841
+ + + + D++ ++V+ ++ L +P K S
Sbjct: 118 TSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 177
Query: 842 A--YVAPETKESKDITEKGDIYGFGLILIDLLT----GKSPADADF 881
+ APE+ + D++ FG++L +L T KSP A+F
Sbjct: 178 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP-AEF 222
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 27/166 (16%)
Query: 736 KLIMHPNIVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRF 793
K + H NIV+ GVC S + L+ EY+ L + L+ + K I K L++
Sbjct: 66 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ------KHKERIDHIKLLQY 119
Query: 794 -------LHFHCSPSVVAGDVSPGKVIVDGKDEPH-----LRLSVPGLAYCTDSKSINSS 841
+ + + + D++ ++V+ ++ L +P K S
Sbjct: 120 TSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 179
Query: 842 A--YVAPETKESKDITEKGDIYGFGLILIDLLT----GKSPADADF 881
+ APE+ + D++ FG++L +L T KSP A+F
Sbjct: 180 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP-AEF 224
>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXP|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 318
Score = 30.0 bits (66), Expect = 5.9, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 28/165 (16%)
Query: 726 SFWPDVSQFGKLIMHPNIVRLHGVCRSEKAA--YLVYEYIEGKELSEVLRNLSWERRRKV 783
S W + + H +I++ G C AA LV EY+ L + L S
Sbjct: 78 SGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHS------- 130
Query: 784 AIGIAKALRFLHFHC-------SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA------ 830
IG+A+ L F C + + D++ V++D ++ +++ GLA
Sbjct: 131 -IGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLD--NDRLVKIGDFGLAKAVPEG 187
Query: 831 ---YCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT 872
Y + + APE + D++ FG+ L +LLT
Sbjct: 188 HEXYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLT 232
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 27/166 (16%)
Query: 736 KLIMHPNIVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRF 793
K + H NIV+ GVC S + L+ EY+ L + L+ + K I K L++
Sbjct: 71 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ------KHKERIDHIKLLQY 124
Query: 794 -------LHFHCSPSVVAGDVSPGKVIVDGKDEPH-----LRLSVPGLAYCTDSKSINSS 841
+ + + + D++ ++V+ ++ L +P K S
Sbjct: 125 TSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 184
Query: 842 A--YVAPETKESKDITEKGDIYGFGLILIDLLT----GKSPADADF 881
+ APE+ + D++ FG++L +L T KSP A+F
Sbjct: 185 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP-AEF 229
>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain
Length = 343
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 36/185 (19%)
Query: 718 DVNTITTSSFWPDVSQFGKLIMHPN-IVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLS 776
+ + T S+ +++ KL H + I+RL+ +++ Y+V E +L+ L+
Sbjct: 45 EADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKKKK 103
Query: 777 ----WERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGK-VIVDGKDEPHLRLSVPGLA- 830
WER+ + +A+ +H H +V D+ P +IVDG L+L G+A
Sbjct: 104 SIDPWERKSYWK-NMLEAVHTIHQH---GIVHSDLKPANFLIVDGM----LKLIDFGIAN 155
Query: 831 --------YCTDSKSINSSAYVAPET-KESKDITEKG----------DIYGFGLILIDLL 871
DS+ + + Y+ PE K+ E G D++ G IL +
Sbjct: 156 QMQPDTTSVVKDSQ-VGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMT 214
Query: 872 TGKSP 876
GK+P
Sbjct: 215 YGKTP 219
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 27/166 (16%)
Query: 736 KLIMHPNIVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRF 793
K + H NIV+ GVC S + L+ EY+ L + L+ + K I K L++
Sbjct: 66 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ------KHKERIDHIKLLQY 119
Query: 794 -------LHFHCSPSVVAGDVSPGKVIVDGKDEPH-----LRLSVPGLAYCTDSKSINSS 841
+ + + + D++ ++V+ ++ L +P K S
Sbjct: 120 TSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 179
Query: 842 A--YVAPETKESKDITEKGDIYGFGLILIDLLT----GKSPADADF 881
+ APE+ + D++ FG++L +L T KSP A+F
Sbjct: 180 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP-AEF 224
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 27/166 (16%)
Query: 736 KLIMHPNIVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRF 793
K + H NIV+ GVC S + L+ EY+ L + L+ + K I K L++
Sbjct: 73 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ------KHKERIDHIKLLQY 126
Query: 794 -------LHFHCSPSVVAGDVSPGKVIVDGKDEPH-----LRLSVPGLAYCTDSKSINSS 841
+ + + + D++ ++V+ ++ L +P K S
Sbjct: 127 TSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 186
Query: 842 A--YVAPETKESKDITEKGDIYGFGLILIDLLT----GKSPADADF 881
+ APE+ + D++ FG++L +L T KSP A+F
Sbjct: 187 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP-AEF 231
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 27/166 (16%)
Query: 736 KLIMHPNIVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRF 793
K + H NIV+ GVC S + L+ EY+ L + L+ + K I K L++
Sbjct: 69 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ------KHKERIDHIKLLQY 122
Query: 794 -------LHFHCSPSVVAGDVSPGKVIVDGKDEPH-----LRLSVPGLAYCTDSKSINSS 841
+ + + + D++ ++V+ ++ L +P K S
Sbjct: 123 TSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 182
Query: 842 A--YVAPETKESKDITEKGDIYGFGLILIDLLT----GKSPADADF 881
+ APE+ + D++ FG++L +L T KSP A+F
Sbjct: 183 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP-AEF 227
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 27/166 (16%)
Query: 736 KLIMHPNIVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRF 793
K + H NIV+ GVC S + L+ EY+ L + L+ + K I K L++
Sbjct: 70 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ------KHKERIDHIKLLQY 123
Query: 794 -------LHFHCSPSVVAGDVSPGKVIVDGKDEPH-----LRLSVPGLAYCTDSKSINSS 841
+ + + + D++ ++V+ ++ L +P K S
Sbjct: 124 TSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 183
Query: 842 A--YVAPETKESKDITEKGDIYGFGLILIDLLT----GKSPADADF 881
+ APE+ + D++ FG++L +L T KSP A+F
Sbjct: 184 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP-AEF 228
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 27/166 (16%)
Query: 736 KLIMHPNIVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRF 793
K + H NIV+ GVC S + L+ EY+ L + L+ + K I K L++
Sbjct: 72 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ------KHKERIDHIKLLQY 125
Query: 794 -------LHFHCSPSVVAGDVSPGKVIVDGKDEPH-----LRLSVPGLAYCTDSKSINSS 841
+ + + + D++ ++V+ ++ L +P K S
Sbjct: 126 TSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 185
Query: 842 A--YVAPETKESKDITEKGDIYGFGLILIDLLT----GKSPADADF 881
+ APE+ + D++ FG++L +L T KSP A+F
Sbjct: 186 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP-AEF 230
>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a)
Activating Mutant
Length = 367
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 83 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 141
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ ++ L++ GLA T + + + Y
Sbjct: 142 LRGLKYIH---SADIIHRDLKPSNLAVN--EDCELKILDFGLARHTADEMTGYVATRWYR 196
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 197 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 228
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 27/166 (16%)
Query: 736 KLIMHPNIVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRF 793
K + H NIV+ GVC S + L+ E++ L E L+ + K I K L++
Sbjct: 69 KSLQHDNIVKYKGVCYSAGRRNLKLIMEFLPYGSLREYLQ------KHKERIDHIKLLQY 122
Query: 794 -------LHFHCSPSVVAGDVSPGKVIVDGKDEPH-----LRLSVPGLAYCTDSKSINSS 841
+ + + + D++ ++V+ ++ L +P K S
Sbjct: 123 TSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 182
Query: 842 A--YVAPETKESKDITEKGDIYGFGLILIDLLT----GKSPADADF 881
+ APE+ + D++ FG++L +L T KSP A+F
Sbjct: 183 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP-AEF 227
>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-A
pdb|2FSM|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-B
Length = 367
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 83 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 141
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ ++ L++ GLA T + + + Y
Sbjct: 142 LRGLKYIH---SADIIHRDLKPSNLAVN--EDCELKILDFGLARHTADEMTGYVATRWYR 196
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 197 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 228
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 69/148 (46%), Gaps = 15/148 (10%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEG--KELSEVLR-NLSWERRRKVAIGIAKALR 792
K + H NIV+L+ V ++K LV+E+++ K+L +V L + + + +
Sbjct: 55 KELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIA 114
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAP 846
+ H V+ D+ P ++++ + E L+++ GLA + I + Y AP
Sbjct: 115 YCH---DRRVLHRDLKPQNLLINREGE--LKIADFGLARAFGIPVRKYTHEIVTLWYRAP 169
Query: 847 ET-KESKDITEKGDIYGFGLILIDLLTG 873
+ SK + DI+ G I +++ G
Sbjct: 170 DVLMGSKKYSTTIDIWSVGCIFAEMVNG 197
>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l)
Activating Mutant
Length = 367
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKA------AYLVYEYIEGKELSEVLR--NLSWERRRKVAIGI 787
K + H N++ L V ++ YLV ++ G +L+ +++ L+ + + + I
Sbjct: 83 KHMKHENVIGLLDVFTPARSLEEFNDVYLV-THLMGADLNNIVKCQKLTDDHVQFLIYQI 141
Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYV 844
+ L+++H S ++ D+ P + V+ ++ L++ GLA T + + + Y
Sbjct: 142 LRGLKYIH---SADIIHRDLKPSNLAVN--EDCELKILDFGLARHTADEMTGYVATRWYR 196
Query: 845 APETKES-KDITEKGDIYGFGLILIDLLTGKS 875
APE + + DI+ G I+ +LLTG++
Sbjct: 197 APEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 228
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 119/296 (40%), Gaps = 45/296 (15%)
Query: 227 LTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIP-----KSILGLKSLVSF 281
L+SL L L YN +F L+NL L L Q L G++ K + L+ LV
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV-- 135
Query: 282 DLSDNYLSGEIPEE-VIQLQNLEILHLFSN-----------NFTGKIPS--SLASMPKLQ 327
L DN + P + ++ +L L N NF GK + L+S+
Sbjct: 136 -LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194
Query: 328 VLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCD--SGSLFKLILFSNSLE 385
+ + W E N K ++T +DLS N + + D +G+ + ++ SNS
Sbjct: 195 MNEYW---LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251
Query: 386 G---------KIPNSLS----TCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDL 432
K P++ + ++ L +++ L S F+ + L ++ N++
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311
Query: 433 SGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLD---LSENRFSGTIPR 485
+ W +T L+ L L N +PD D+L +L L N + + PR
Sbjct: 312 NKIDDNAFWGLTHLKELALDTNQLKS-VPDGI-FDRLTSLQKIWLHTNPWDCSCPR 365
>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXL|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 327
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 20/145 (13%)
Query: 743 IVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHF 796
IV+ GV ++ LV EY+ L + L+ L R + I K + +L
Sbjct: 86 IVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLG- 144
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---------YCTDSKSINSSAYVAPE 847
S V D++ ++V+ E H++++ GLA Y + + APE
Sbjct: 145 --SRRCVHRDLAARNILVES--EAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPE 200
Query: 848 TKESKDITEKGDIYGFGLILIDLLT 872
+ + + D++ FG++L +L T
Sbjct: 201 SLSDNIFSRQSDVWSFGVVLYELFT 225
>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From
Cryptosporidium Parvum, Cgd7_40
Length = 345
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 715 KIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN 774
KI +N +V KL HPNI RL+ V E+ LV E G L + L
Sbjct: 63 KIRQINPKDVERIKTEVRLMKKL-HHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNV 121
Query: 775 LSWERRRKVAIGIAKA 790
+ K A+ + K
Sbjct: 122 FIDDSTGKCAMDVVKT 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,610,898
Number of Sequences: 62578
Number of extensions: 1151313
Number of successful extensions: 5342
Number of sequences better than 100.0: 871
Number of HSP's better than 100.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 468
Number of HSP's that attempted gapping in prelim test: 3285
Number of HSP's gapped (non-prelim): 1387
length of query: 966
length of database: 14,973,337
effective HSP length: 108
effective length of query: 858
effective length of database: 8,214,913
effective search space: 7048395354
effective search space used: 7048395354
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)