Query 002108
Match_columns 965
No_of_seqs 408 out of 1778
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 16:41:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002108.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002108hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1029 Endocytic adaptor prot 100.0 8.1E-39 1.8E-43 366.3 43.8 98 425-523 182-279 (1118)
2 KOG0998 Synaptic vesicle prote 100.0 5.7E-34 1.2E-38 344.6 30.3 586 5-798 6-601 (847)
3 PF12763 EF-hand_4: Cytoskelet 99.8 4.5E-21 9.7E-26 180.5 7.5 93 5-99 5-99 (104)
4 KOG1029 Endocytic adaptor prot 99.8 4.4E-18 9.5E-23 197.2 32.0 92 427-520 5-96 (1118)
5 PF12763 EF-hand_4: Cytoskelet 99.8 7.7E-21 1.7E-25 178.9 7.3 93 431-524 2-96 (104)
6 KOG1955 Ral-GTPase effector RA 99.7 1.5E-16 3.3E-21 178.3 8.1 101 421-522 214-314 (737)
7 smart00027 EH Eps15 homology d 99.6 1.1E-15 2.4E-20 140.4 11.4 94 429-523 1-94 (96)
8 smart00027 EH Eps15 homology d 99.4 3.4E-12 7.3E-17 117.4 9.9 90 6-96 6-95 (96)
9 KOG1954 Endocytosis/signaling 99.3 8.3E-13 1.8E-17 145.9 6.0 91 6-98 440-530 (532)
10 KOG1955 Ral-GTPase effector RA 99.3 1.8E-12 3.8E-17 146.2 5.0 87 5-92 226-312 (737)
11 KOG1954 Endocytosis/signaling 99.2 3.6E-11 7.8E-16 133.3 7.0 110 407-524 419-528 (532)
12 cd00052 EH Eps15 homology doma 99.0 6.2E-10 1.3E-14 93.9 8.1 67 441-507 1-67 (67)
13 cd00052 EH Eps15 homology doma 99.0 8.4E-10 1.8E-14 93.1 8.3 67 12-78 1-67 (67)
14 KOG0998 Synaptic vesicle prote 99.0 1.2E-09 2.6E-14 134.3 12.5 99 425-525 116-216 (847)
15 PF13499 EF-hand_7: EF-hand do 98.8 9.5E-09 2.1E-13 87.4 7.0 60 440-499 1-66 (66)
16 PF13499 EF-hand_7: EF-hand do 98.7 4.5E-08 9.8E-13 83.2 6.8 60 11-70 1-66 (66)
17 cd05022 S-100A13 S-100A13: S-1 98.7 8.3E-08 1.8E-12 88.6 8.7 69 436-504 5-78 (89)
18 COG5126 FRQ1 Ca2+-binding prot 98.5 2.1E-07 4.5E-12 94.5 7.6 62 438-499 91-154 (160)
19 cd05027 S-100B S-100B: S-100B 98.5 7.2E-07 1.6E-11 82.0 9.7 66 437-502 6-80 (88)
20 PF00038 Filament: Intermediat 98.5 8.6E-06 1.9E-10 89.4 19.8 122 599-739 169-297 (312)
21 cd00213 S-100 S-100: S-100 dom 98.5 8.6E-07 1.9E-11 80.1 9.6 68 435-502 4-80 (88)
22 KOG0027 Calmodulin and related 98.5 3.8E-07 8.2E-12 90.4 7.8 63 438-500 84-148 (151)
23 cd05026 S-100Z S-100Z: S-100Z 98.5 8E-07 1.7E-11 82.2 9.1 67 436-502 7-82 (93)
24 cd05025 S-100A1 S-100A1: S-100 98.4 1.1E-06 2.3E-11 80.5 9.6 68 437-504 7-83 (92)
25 cd05031 S-100A10_like S-100A10 98.4 1.1E-06 2.3E-11 80.9 9.5 67 437-503 6-81 (94)
26 cd05029 S-100A6 S-100A6: S-100 98.4 1.2E-06 2.6E-11 80.6 9.6 67 436-502 7-80 (88)
27 KOG0027 Calmodulin and related 98.4 8.4E-07 1.8E-11 87.9 8.9 73 433-505 2-76 (151)
28 cd05022 S-100A13 S-100A13: S-1 98.4 1.3E-06 2.7E-11 80.9 8.0 71 9-79 7-82 (89)
29 cd05023 S-100A11 S-100A11: S-1 98.4 2.1E-06 4.5E-11 79.2 9.3 67 436-502 6-81 (89)
30 PTZ00183 centrin; Provisional 98.3 2.6E-06 5.7E-11 82.6 9.5 71 432-502 10-82 (158)
31 KOG0041 Predicted Ca2+-binding 98.3 1.3E-06 2.9E-11 90.9 7.2 68 427-496 89-158 (244)
32 PTZ00184 calmodulin; Provision 98.3 3.8E-06 8.2E-11 80.2 9.4 71 432-502 4-76 (149)
33 cd05025 S-100A1 S-100A1: S-100 98.3 4.1E-06 9E-11 76.7 8.9 71 9-79 8-87 (92)
34 cd05027 S-100B S-100B: S-100B 98.2 6.4E-06 1.4E-10 75.8 9.1 71 9-79 7-86 (88)
35 cd00252 SPARC_EC SPARC_EC; ext 98.2 5.7E-06 1.2E-10 80.1 8.4 64 434-499 43-106 (116)
36 cd00051 EFh EF-hand, calcium b 98.1 7.5E-06 1.6E-10 65.5 7.1 59 441-499 2-62 (63)
37 cd05031 S-100A10_like S-100A10 98.1 1.2E-05 2.5E-10 74.1 9.1 70 9-78 7-85 (94)
38 cd05029 S-100A6 S-100A6: S-100 98.1 1E-05 2.2E-10 74.5 8.3 77 1-77 1-84 (88)
39 cd05026 S-100Z S-100Z: S-100Z 98.1 1.4E-05 3E-10 74.0 9.2 70 9-78 9-87 (93)
40 PTZ00184 calmodulin; Provision 98.1 1.1E-05 2.4E-10 77.1 8.5 73 1-73 1-76 (149)
41 COG5126 FRQ1 Ca2+-binding prot 98.1 1E-05 2.3E-10 82.3 8.5 72 432-504 13-86 (160)
42 cd05023 S-100A11 S-100A11: S-1 98.1 1.8E-05 3.9E-10 73.1 8.9 70 9-78 8-86 (89)
43 PTZ00183 centrin; Provisional 98.0 1.5E-05 3.3E-10 77.3 8.1 61 439-499 90-152 (158)
44 cd00213 S-100 S-100: S-100 dom 98.0 3.3E-05 7.2E-10 69.8 8.7 69 7-75 5-82 (88)
45 PF13833 EF-hand_8: EF-hand do 98.0 1.5E-05 3.2E-10 65.7 5.7 49 452-500 1-52 (54)
46 cd00252 SPARC_EC SPARC_EC; ext 97.9 2.7E-05 5.8E-10 75.5 8.1 60 9-70 47-106 (116)
47 cd05030 calgranulins Calgranul 97.9 5.1E-05 1.1E-09 69.6 8.6 67 436-502 5-80 (88)
48 cd00051 EFh EF-hand, calcium b 97.8 6.3E-05 1.4E-09 60.1 7.4 59 12-70 2-62 (63)
49 PRK11637 AmiB activator; Provi 97.8 0.0014 3.1E-08 75.7 21.3 14 936-949 365-378 (428)
50 PF13833 EF-hand_8: EF-hand do 97.8 4.4E-05 9.5E-10 62.9 5.8 49 23-71 1-52 (54)
51 KOG0028 Ca2+-binding protein ( 97.8 5.5E-05 1.2E-09 76.8 7.7 63 438-500 105-169 (172)
52 PF14658 EF-hand_9: EF-hand do 97.8 5.3E-05 1.2E-09 66.9 6.4 59 443-501 2-64 (66)
53 KOG0034 Ca2+/calmodulin-depend 97.8 6.9E-05 1.5E-09 78.2 8.4 63 438-500 103-174 (187)
54 KOG0041 Predicted Ca2+-binding 97.7 6.9E-05 1.5E-09 78.4 7.3 68 8-75 97-166 (244)
55 PRK09039 hypothetical protein; 97.7 0.0022 4.7E-08 72.7 19.5 71 638-708 113-183 (343)
56 PRK11637 AmiB activator; Provi 97.6 0.0047 1E-07 71.5 21.3 50 615-664 70-119 (428)
57 PF09726 Macoilin: Transmembra 97.5 0.0017 3.6E-08 79.6 16.5 28 716-743 541-571 (697)
58 COG1579 Zn-ribbon protein, pos 97.5 0.0092 2E-07 64.7 20.1 52 599-650 31-82 (239)
59 PRK09039 hypothetical protein; 97.5 0.0038 8.2E-08 70.8 17.7 73 651-732 112-184 (343)
60 COG1579 Zn-ribbon protein, pos 97.5 0.0073 1.6E-07 65.5 18.3 137 606-747 52-192 (239)
61 TIGR02168 SMC_prok_B chromosom 97.5 0.0074 1.6E-07 76.3 21.3 13 721-733 825-837 (1179)
62 KOG0028 Ca2+-binding protein ( 97.4 0.00034 7.4E-09 71.2 7.5 69 432-500 26-96 (172)
63 KOG0034 Ca2+/calmodulin-depend 97.4 0.00038 8.2E-09 72.8 7.9 65 9-73 103-176 (187)
64 TIGR02168 SMC_prok_B chromosom 97.4 0.0082 1.8E-07 75.9 21.1 7 943-949 1159-1165(1179)
65 PF08317 Spc7: Spc7 kinetochor 97.4 0.009 1.9E-07 67.2 19.0 84 657-749 211-298 (325)
66 PF09726 Macoilin: Transmembra 97.4 0.01 2.2E-07 73.0 20.8 56 599-654 460-515 (697)
67 TIGR02169 SMC_prok_A chromosom 97.4 0.01 2.2E-07 75.4 21.3 7 943-949 1144-1150(1164)
68 KOG0031 Myosin regulatory ligh 97.4 0.00055 1.2E-08 69.4 7.7 61 439-499 101-163 (171)
69 cd05030 calgranulins Calgranul 97.3 0.00068 1.5E-08 62.2 7.7 67 11-77 9-84 (88)
70 smart00787 Spc7 Spc7 kinetocho 97.3 0.018 3.9E-07 64.8 20.1 127 608-750 160-294 (312)
71 PF12718 Tropomyosin_1: Tropom 97.3 0.029 6.3E-07 56.5 19.5 21 718-738 120-140 (143)
72 KOG0377 Protein serine/threoni 97.3 0.00044 9.6E-09 79.1 7.2 69 438-506 546-620 (631)
73 KOG0037 Ca2+-binding protein, 97.3 0.00073 1.6E-08 71.7 8.3 63 438-500 123-187 (221)
74 KOG0044 Ca2+ sensor (EF-Hand s 97.3 0.00039 8.4E-09 73.0 5.8 61 440-500 101-174 (193)
75 KOG0031 Myosin regulatory ligh 97.2 0.00091 2E-08 67.9 7.7 74 430-510 23-98 (171)
76 PF10186 Atg14: UV radiation r 97.2 0.024 5.2E-07 61.4 19.1 39 654-692 69-107 (302)
77 PF12718 Tropomyosin_1: Tropom 97.1 0.035 7.6E-07 55.9 18.0 65 660-733 78-142 (143)
78 KOG0046 Ca2+-binding actin-bun 97.1 0.0011 2.5E-08 77.3 8.4 71 432-503 12-87 (627)
79 KOG0250 DNA repair protein RAD 97.1 0.017 3.6E-07 72.7 18.4 125 620-744 337-474 (1074)
80 PF00261 Tropomyosin: Tropomyo 97.1 0.056 1.2E-06 58.3 20.2 65 618-682 83-147 (237)
81 KOG0030 Myosin essential light 97.1 0.0012 2.6E-08 66.1 6.8 74 433-506 5-82 (152)
82 COG4942 Membrane-bound metallo 97.1 0.053 1.2E-06 62.9 20.7 71 601-671 40-110 (420)
83 PF00261 Tropomyosin: Tropomyo 97.1 0.049 1.1E-06 58.7 19.4 60 615-674 94-153 (237)
84 TIGR01005 eps_transp_fam exopo 97.0 0.021 4.6E-07 70.5 18.5 91 657-747 318-410 (754)
85 PLN02964 phosphatidylserine de 97.0 0.0019 4.2E-08 78.3 9.0 70 427-500 131-206 (644)
86 KOG0250 DNA repair protein RAD 97.0 0.014 2.9E-07 73.4 16.4 98 611-708 279-383 (1074)
87 PF14658 EF-hand_9: EF-hand do 97.0 0.0012 2.7E-08 58.4 5.4 59 14-72 2-64 (66)
88 TIGR01843 type_I_hlyD type I s 97.0 0.056 1.2E-06 61.2 19.9 69 671-740 198-266 (423)
89 TIGR03007 pepcterm_ChnLen poly 97.0 0.015 3.3E-07 68.1 15.8 56 690-745 331-387 (498)
90 cd05024 S-100A10 S-100A10: A s 97.0 0.0056 1.2E-07 57.5 9.7 66 437-503 6-78 (91)
91 KOG0377 Protein serine/threoni 97.0 0.0014 3E-08 75.2 6.9 69 8-76 545-619 (631)
92 COG3883 Uncharacterized protei 97.0 0.073 1.6E-06 58.6 19.6 59 608-666 40-98 (265)
93 PRK12309 transaldolase/EF-hand 97.0 0.0017 3.8E-08 74.7 7.7 57 438-505 333-389 (391)
94 PRK03918 chromosome segregatio 96.9 0.063 1.4E-06 67.1 21.6 38 611-648 191-228 (880)
95 KOG0030 Myosin essential light 96.9 0.0019 4.2E-08 64.6 6.7 59 438-497 87-147 (152)
96 PRK02224 chromosome segregatio 96.9 0.043 9.4E-07 68.7 20.1 15 942-956 860-874 (880)
97 PF08317 Spc7: Spc7 kinetochor 96.9 0.082 1.8E-06 59.6 20.1 11 487-497 11-21 (325)
98 PLN02964 phosphatidylserine de 96.9 0.0022 4.7E-08 77.9 8.0 63 10-72 179-243 (644)
99 PRK03918 chromosome segregatio 96.9 0.063 1.4E-06 67.1 20.9 17 768-784 747-763 (880)
100 PRK12309 transaldolase/EF-hand 96.9 0.0021 4.6E-08 74.0 7.6 55 9-74 333-387 (391)
101 KOG0933 Structural maintenance 96.8 0.06 1.3E-06 67.3 19.5 102 623-733 790-891 (1174)
102 PF04156 IncA: IncA protein; 96.8 0.054 1.2E-06 55.9 16.6 35 613-647 88-122 (191)
103 PF04849 HAP1_N: HAP1 N-termin 96.8 0.033 7.2E-07 62.3 15.8 115 623-742 184-298 (306)
104 PF13405 EF-hand_6: EF-hand do 96.8 0.0015 3.2E-08 48.8 3.6 27 440-466 1-27 (31)
105 KOG0804 Cytoplasmic Zn-finger 96.8 0.02 4.3E-07 66.3 14.1 17 432-448 85-101 (493)
106 PRK04863 mukB cell division pr 96.8 0.061 1.3E-06 71.2 20.3 28 718-745 461-488 (1486)
107 COG3883 Uncharacterized protei 96.8 0.087 1.9E-06 58.0 18.3 57 613-669 38-94 (265)
108 PF05701 WEMBL: Weak chloropla 96.8 0.084 1.8E-06 63.2 19.8 124 610-733 239-385 (522)
109 TIGR01843 type_I_hlyD type I s 96.8 0.12 2.6E-06 58.5 20.2 17 718-734 251-267 (423)
110 PRK04863 mukB cell division pr 96.7 0.088 1.9E-06 69.7 21.4 72 675-746 389-468 (1486)
111 PRK02224 chromosome segregatio 96.7 0.077 1.7E-06 66.5 19.9 20 649-668 573-592 (880)
112 KOG0036 Predicted mitochondria 96.7 0.0061 1.3E-07 69.9 9.2 73 433-505 8-83 (463)
113 PF00036 EF-hand_1: EF hand; 96.7 0.002 4.3E-08 48.1 3.7 26 441-466 2-27 (29)
114 PF07888 CALCOCO1: Calcium bin 96.7 0.1 2.2E-06 62.5 19.4 14 763-776 348-361 (546)
115 KOG0044 Ca2+ sensor (EF-Hand s 96.7 0.0036 7.8E-08 65.9 6.8 70 439-508 64-135 (193)
116 PF00036 EF-hand_1: EF hand; 96.7 0.0018 4E-08 48.4 3.3 27 474-500 1-27 (29)
117 PF00038 Filament: Intermediat 96.7 0.053 1.1E-06 59.9 16.2 110 599-708 7-128 (312)
118 COG1196 Smc Chromosome segrega 96.7 0.099 2.2E-06 68.0 21.0 9 739-747 957-965 (1163)
119 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.7 0.054 1.2E-06 53.6 14.5 16 718-733 110-125 (132)
120 smart00787 Spc7 Spc7 kinetocho 96.7 0.14 3.1E-06 57.7 19.6 58 651-708 175-236 (312)
121 TIGR03017 EpsF chain length de 96.6 0.066 1.4E-06 61.8 17.0 31 652-682 258-288 (444)
122 cd05024 S-100A10 S-100A10: A s 96.6 0.014 2.9E-07 54.9 9.2 68 11-79 9-83 (91)
123 KOG0980 Actin-binding protein 96.6 0.17 3.8E-06 62.7 20.7 48 636-683 412-459 (980)
124 PF07888 CALCOCO1: Calcium bin 96.5 0.12 2.5E-06 62.0 18.7 34 714-747 277-310 (546)
125 KOG0161 Myosin class II heavy 96.5 0.14 3.1E-06 68.7 21.3 18 35-52 328-345 (1930)
126 KOG0976 Rho/Rac1-interacting s 96.5 0.15 3.3E-06 62.5 19.1 47 623-669 259-305 (1265)
127 KOG0996 Structural maintenance 96.5 0.16 3.4E-06 64.6 19.9 15 457-471 653-667 (1293)
128 PF08614 ATG16: Autophagy prot 96.5 0.033 7.2E-07 58.3 12.3 16 718-733 163-178 (194)
129 PF12128 DUF3584: Protein of u 96.5 0.098 2.1E-06 68.3 19.1 24 724-747 747-770 (1201)
130 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.4 0.27 5.9E-06 48.6 17.9 16 718-733 103-118 (132)
131 PHA02562 46 endonuclease subun 96.4 0.11 2.3E-06 61.7 17.9 40 692-733 353-392 (562)
132 PF10473 CENP-F_leu_zip: Leuci 96.4 0.43 9.3E-06 48.3 19.3 62 647-708 58-119 (140)
133 PF10174 Cast: RIM-binding pro 96.4 0.2 4.4E-06 62.5 20.4 123 610-741 291-413 (775)
134 KOG0996 Structural maintenance 96.4 0.15 3.2E-06 64.9 19.1 49 623-671 380-428 (1293)
135 PF04111 APG6: Autophagy prote 96.4 0.015 3.2E-07 65.4 9.8 16 718-733 118-133 (314)
136 COG1340 Uncharacterized archae 96.4 0.15 3.2E-06 57.0 17.2 80 605-684 19-98 (294)
137 KOG0037 Ca2+-binding protein, 96.3 0.013 2.8E-07 62.5 8.5 65 9-73 123-189 (221)
138 KOG0971 Microtubule-associated 96.3 0.17 3.7E-06 62.8 18.6 98 599-698 283-393 (1243)
139 KOG0994 Extracellular matrix g 96.3 0.25 5.5E-06 62.6 20.3 87 645-733 1609-1702(1758)
140 KOG0977 Nuclear envelope prote 96.3 0.18 3.9E-06 60.5 18.6 15 716-730 245-259 (546)
141 KOG0161 Myosin class II heavy 96.3 0.22 4.8E-06 67.0 21.2 39 670-708 1056-1094(1930)
142 PF10481 CENP-F_N: Cenp-F N-te 96.3 0.11 2.4E-06 57.1 15.1 107 614-736 19-125 (307)
143 PF13851 GAS: Growth-arrest sp 96.2 0.17 3.6E-06 53.8 16.0 129 619-747 33-177 (201)
144 PF11932 DUF3450: Protein of u 96.2 0.21 4.6E-06 54.1 17.2 94 632-725 40-133 (251)
145 PF10186 Atg14: UV radiation r 96.2 0.62 1.3E-05 50.6 20.8 73 636-708 58-130 (302)
146 KOG0978 E3 ubiquitin ligase in 96.2 0.34 7.4E-06 59.6 20.4 107 621-736 511-617 (698)
147 COG1340 Uncharacterized archae 96.2 0.32 6.9E-06 54.4 18.5 118 611-728 156-273 (294)
148 TIGR03007 pepcterm_ChnLen poly 96.2 0.18 4E-06 59.2 17.7 25 684-708 318-342 (498)
149 KOG0976 Rho/Rac1-interacting s 96.2 0.15 3.2E-06 62.5 16.7 63 611-673 97-159 (1265)
150 TIGR01010 BexC_CtrB_KpsE polys 96.2 0.15 3.3E-06 57.7 16.4 121 611-740 175-305 (362)
151 KOG0036 Predicted mitochondria 96.1 0.011 2.3E-07 68.0 7.0 64 438-501 81-146 (463)
152 KOG4360 Uncharacterized coiled 96.1 0.16 3.5E-06 59.9 16.4 121 611-733 164-288 (596)
153 PF11559 ADIP: Afadin- and alp 96.1 0.29 6.3E-06 49.1 16.4 75 650-736 75-149 (151)
154 PF15070 GOLGA2L5: Putative go 96.1 0.078 1.7E-06 64.6 14.7 57 674-732 158-214 (617)
155 PF10168 Nup88: Nuclear pore c 96.1 0.29 6.2E-06 60.9 19.6 66 679-744 642-716 (717)
156 PRK04778 septation ring format 96.1 0.19 4.1E-06 60.8 17.6 60 611-670 280-339 (569)
157 KOG4223 Reticulocalbin, calume 96.1 0.0063 1.4E-07 68.0 4.8 63 9-71 76-140 (325)
158 PRK04778 septation ring format 96.1 0.28 6E-06 59.3 19.0 56 620-675 282-337 (569)
159 PF10146 zf-C4H2: Zinc finger- 96.1 0.18 3.9E-06 54.7 15.6 30 718-747 79-109 (230)
160 TIGR00606 rad50 rad50. This fa 96.1 0.24 5.2E-06 65.3 19.7 7 928-934 1229-1235(1311)
161 COG4372 Uncharacterized protei 96.1 0.75 1.6E-05 52.9 20.7 94 615-708 139-242 (499)
162 KOG0964 Structural maintenance 96.0 0.4 8.7E-06 60.2 19.9 44 646-689 326-369 (1200)
163 PF13851 GAS: Growth-arrest sp 96.0 0.63 1.4E-05 49.5 19.1 66 615-684 64-129 (201)
164 PF09789 DUF2353: Uncharacteri 96.0 0.31 6.7E-06 55.2 17.6 33 714-746 197-235 (319)
165 PF13405 EF-hand_6: EF-hand do 96.0 0.0092 2E-07 44.5 3.7 27 12-38 2-28 (31)
166 KOG0038 Ca2+-binding kinase in 96.0 0.01 2.2E-07 60.0 5.1 61 441-504 110-177 (189)
167 PRK11519 tyrosine kinase; Prov 95.9 0.23 4.9E-06 61.6 17.8 131 611-747 272-404 (719)
168 KOG0995 Centromere-associated 95.9 0.16 3.4E-06 60.8 15.3 81 600-680 246-326 (581)
169 PF06008 Laminin_I: Laminin Do 95.9 0.36 7.9E-06 52.7 17.3 23 718-740 183-205 (264)
170 PF05701 WEMBL: Weak chloropla 95.9 0.3 6.5E-06 58.6 18.0 71 605-675 287-357 (522)
171 PF12325 TMF_TATA_bd: TATA ele 95.9 0.23 5E-06 49.0 14.0 89 612-700 22-113 (120)
172 PRK09841 cryptic autophosphory 95.9 0.22 4.7E-06 61.9 17.3 130 611-746 272-403 (726)
173 KOG0977 Nuclear envelope prote 95.9 0.49 1.1E-05 56.9 19.3 58 651-708 109-166 (546)
174 PF05278 PEARLI-4: Arabidopsis 95.9 0.16 3.6E-06 56.0 14.3 77 624-708 163-239 (269)
175 PF04012 PspA_IM30: PspA/IM30 95.9 0.85 1.8E-05 48.4 19.3 55 653-707 89-143 (221)
176 TIGR03017 EpsF chain length de 95.9 0.48 1E-05 54.8 18.9 15 472-486 79-93 (444)
177 PF13202 EF-hand_5: EF hand; P 95.8 0.01 2.2E-07 42.9 3.2 25 441-465 1-25 (25)
178 KOG0042 Glycerol-3-phosphate d 95.8 0.015 3.3E-07 69.0 6.5 87 416-503 571-659 (680)
179 COG4942 Membrane-bound metallo 95.8 0.097 2.1E-06 60.9 12.8 73 655-736 38-110 (420)
180 KOG0971 Microtubule-associated 95.8 0.75 1.6E-05 57.5 20.6 112 622-733 278-416 (1243)
181 PF12128 DUF3584: Protein of u 95.8 0.37 8.1E-06 63.1 19.4 12 722-733 773-784 (1201)
182 PF12761 End3: Actin cytoskele 95.8 0.079 1.7E-06 56.0 10.8 30 493-522 3-32 (195)
183 KOG4643 Uncharacterized coiled 95.7 0.3 6.5E-06 61.4 17.1 53 681-733 262-314 (1195)
184 KOG0933 Structural maintenance 95.7 0.53 1.2E-05 59.4 19.1 74 635-708 823-896 (1174)
185 KOG4674 Uncharacterized conser 95.7 0.49 1.1E-05 63.2 19.8 17 727-743 1402-1420(1822)
186 KOG0040 Ca2+-binding actin-bun 95.7 0.021 4.5E-07 73.1 7.3 68 432-499 2246-2322(2399)
187 PF10591 SPARC_Ca_bdg: Secrete 95.7 0.0037 8E-08 60.4 0.6 61 437-497 52-112 (113)
188 KOG0964 Structural maintenance 95.6 0.31 6.6E-06 61.2 16.7 84 607-690 679-762 (1200)
189 PF10591 SPARC_Ca_bdg: Secrete 95.6 0.0053 1.1E-07 59.3 1.6 60 9-68 53-112 (113)
190 PRK10698 phage shock protein P 95.6 1.8 3.9E-05 46.8 20.8 34 691-725 167-200 (222)
191 PF15619 Lebercilin: Ciliary p 95.6 0.89 1.9E-05 48.2 18.1 118 622-739 63-190 (194)
192 TIGR00606 rad50 rad50. This fa 95.6 0.72 1.6E-05 61.0 21.1 20 689-708 983-1002(1311)
193 PF13202 EF-hand_5: EF hand; P 95.6 0.014 3.1E-07 42.2 3.2 23 13-35 2-24 (25)
194 PF04949 Transcrip_act: Transc 95.5 1.6 3.5E-05 44.6 18.5 73 660-741 82-155 (159)
195 PF14662 CCDC155: Coiled-coil 95.5 1.3 2.8E-05 47.0 18.6 98 623-733 39-136 (193)
196 PF13870 DUF4201: Domain of un 95.5 1.3 2.9E-05 45.6 18.7 89 654-751 55-143 (177)
197 PF07106 TBPIP: Tat binding pr 95.5 0.19 4E-06 51.5 12.3 93 648-741 72-166 (169)
198 KOG4302 Microtubule-associated 95.5 0.27 5.9E-06 60.2 15.5 143 608-751 34-205 (660)
199 PF08614 ATG16: Autophagy prot 95.5 0.13 2.8E-06 53.9 11.3 78 631-708 99-183 (194)
200 KOG4643 Uncharacterized coiled 95.5 0.41 8.8E-06 60.3 16.9 102 607-708 395-520 (1195)
201 PF10146 zf-C4H2: Zinc finger- 95.5 0.43 9.4E-06 51.8 15.5 75 624-728 29-103 (230)
202 PF15070 GOLGA2L5: Putative go 95.4 0.81 1.8E-05 56.1 19.4 48 656-703 88-142 (617)
203 PF05667 DUF812: Protein of un 95.4 0.42 9.2E-06 58.2 16.9 36 611-646 333-368 (594)
204 PRK11281 hypothetical protein; 95.4 0.17 3.7E-06 65.4 14.3 90 655-747 128-218 (1113)
205 KOG0980 Actin-binding protein 95.4 0.91 2E-05 56.7 19.6 90 621-710 380-479 (980)
206 PF07111 HCR: Alpha helical co 95.4 1.3 2.8E-05 54.4 20.6 90 619-708 513-614 (739)
207 PRK10884 SH3 domain-containing 95.4 0.17 3.8E-06 53.9 12.1 16 613-628 93-108 (206)
208 TIGR02680 conserved hypothetic 95.4 1.1 2.4E-05 59.5 21.9 19 488-506 175-193 (1353)
209 PF10168 Nup88: Nuclear pore c 95.3 0.19 4.2E-06 62.4 14.0 13 316-336 244-256 (717)
210 TIGR01005 eps_transp_fam exopo 95.3 0.67 1.5E-05 57.6 18.6 100 650-749 290-408 (754)
211 PF10473 CENP-F_leu_zip: Leuci 95.3 2.2 4.7E-05 43.4 18.8 13 673-685 91-103 (140)
212 PF09304 Cortex-I_coil: Cortex 95.3 0.82 1.8E-05 44.4 14.9 49 660-708 42-90 (107)
213 KOG1853 LIS1-interacting prote 95.2 1 2.2E-05 49.5 17.1 14 737-750 174-187 (333)
214 KOG0979 Structural maintenance 95.2 0.79 1.7E-05 58.0 18.1 107 632-740 246-352 (1072)
215 KOG4302 Microtubule-associated 95.2 0.69 1.5E-05 56.8 17.4 76 611-686 59-134 (660)
216 PF06818 Fez1: Fez1; InterPro 95.1 0.99 2.1E-05 48.2 16.5 127 607-740 18-158 (202)
217 PF12325 TMF_TATA_bd: TATA ele 95.1 0.79 1.7E-05 45.3 14.7 97 632-741 21-117 (120)
218 KOG4223 Reticulocalbin, calume 95.1 0.025 5.4E-07 63.4 4.9 72 433-504 70-144 (325)
219 KOG0243 Kinesin-like protein [ 95.1 1.6 3.5E-05 55.8 20.7 13 440-452 167-179 (1041)
220 PRK09841 cryptic autophosphory 95.0 0.68 1.5E-05 57.6 17.5 122 627-748 267-401 (726)
221 PF11932 DUF3450: Protein of u 95.0 0.68 1.5E-05 50.3 15.5 14 766-779 203-219 (251)
222 PF15619 Lebercilin: Ciliary p 95.0 1.3 2.8E-05 47.0 17.1 44 658-701 64-107 (194)
223 COG2433 Uncharacterized conser 95.0 0.91 2E-05 54.9 17.4 75 650-733 424-508 (652)
224 PF12795 MscS_porin: Mechanose 95.0 1.2 2.6E-05 48.0 17.1 27 716-742 188-214 (240)
225 KOG4673 Transcription factor T 94.9 0.7 1.5E-05 56.3 16.2 73 614-688 410-486 (961)
226 KOG0018 Structural maintenance 94.9 1.4 3.1E-05 56.1 19.3 78 607-684 677-754 (1141)
227 PF05911 DUF869: Plant protein 94.9 0.77 1.7E-05 57.5 17.1 73 636-708 619-691 (769)
228 PF04111 APG6: Autophagy prote 94.8 0.91 2E-05 51.3 16.3 112 637-748 60-194 (314)
229 PF07111 HCR: Alpha helical co 94.8 1 2.2E-05 55.3 17.4 89 655-744 514-606 (739)
230 COG4372 Uncharacterized protei 94.8 2.4 5.1E-05 49.1 19.2 52 621-672 110-161 (499)
231 PRK01156 chromosome segregatio 94.8 1.3 2.8E-05 56.2 19.3 20 724-743 473-492 (895)
232 COG2433 Uncharacterized conser 94.8 0.75 1.6E-05 55.6 16.0 114 637-760 432-557 (652)
233 PF12795 MscS_porin: Mechanose 94.8 0.86 1.9E-05 49.2 15.3 19 690-708 120-138 (240)
234 PF05667 DUF812: Protein of un 94.7 2.4 5.1E-05 52.0 20.2 51 622-672 330-380 (594)
235 TIGR01000 bacteriocin_acc bact 94.7 3.1 6.8E-05 48.9 20.8 20 718-737 289-308 (457)
236 PRK12704 phosphodiesterase; Pr 94.6 1.5 3.3E-05 52.8 18.4 25 734-758 192-219 (520)
237 PRK11281 hypothetical protein; 94.6 0.79 1.7E-05 59.6 17.0 26 717-742 231-256 (1113)
238 TIGR02680 conserved hypothetic 94.6 1.7 3.7E-05 57.8 20.5 19 623-641 847-865 (1353)
239 PRK10929 putative mechanosensi 94.6 0.38 8.3E-06 62.2 14.0 27 717-743 212-238 (1109)
240 PF03148 Tektin: Tektin family 94.6 1.5 3.3E-05 50.7 17.7 111 615-734 231-352 (384)
241 KOG4593 Mitotic checkpoint pro 94.6 0.73 1.6E-05 56.3 15.5 123 609-733 380-516 (716)
242 cd07651 F-BAR_PombeCdc15_like 94.6 4.9 0.00011 43.2 20.5 42 642-683 101-142 (236)
243 KOG0804 Cytoplasmic Zn-finger 94.6 1 2.3E-05 52.7 16.0 16 718-733 433-448 (493)
244 KOG0612 Rho-associated, coiled 94.6 0.97 2.1E-05 58.2 16.9 84 610-695 620-705 (1317)
245 PF11559 ADIP: Afadin- and alp 94.5 1.3 2.9E-05 44.4 15.1 50 659-708 70-119 (151)
246 PF10174 Cast: RIM-binding pro 94.5 2.5 5.4E-05 53.2 20.4 11 472-482 155-165 (775)
247 PF15397 DUF4618: Domain of un 94.5 3 6.4E-05 46.3 18.7 62 614-678 82-143 (258)
248 PRK10869 recombination and rep 94.5 1.2 2.6E-05 54.0 17.3 44 701-744 328-372 (553)
249 KOG0288 WD40 repeat protein Ti 94.4 0.31 6.7E-06 56.4 11.4 96 613-708 13-108 (459)
250 TIGR03319 YmdA_YtgF conserved 94.4 1.8 4E-05 52.1 18.4 25 734-758 186-213 (514)
251 PF10481 CENP-F_N: Cenp-F N-te 94.4 1.2 2.6E-05 49.4 15.3 26 683-708 95-120 (307)
252 PRK10361 DNA recombination pro 94.4 3.1 6.7E-05 49.7 19.8 38 692-729 142-181 (475)
253 PF15066 CAGE1: Cancer-associa 94.4 1.4 3.1E-05 51.8 16.5 86 619-708 330-422 (527)
254 PF09730 BicD: Microtubule-ass 94.4 0.74 1.6E-05 57.2 15.2 40 694-733 108-148 (717)
255 PF05911 DUF869: Plant protein 94.3 1 2.2E-05 56.4 16.5 99 623-730 592-690 (769)
256 KOG4677 Golgi integral membran 94.3 1.1 2.3E-05 52.5 15.3 97 611-708 257-355 (554)
257 PF12252 SidE: Dot/Icm substra 94.3 0.63 1.4E-05 58.9 14.2 66 685-750 1162-1234(1439)
258 KOG0288 WD40 repeat protein Ti 94.3 1.2 2.7E-05 51.7 15.6 84 625-708 32-115 (459)
259 PF04849 HAP1_N: HAP1 N-termin 94.3 1.8 3.9E-05 48.9 16.7 86 623-708 202-294 (306)
260 PRK00106 hypothetical protein; 94.2 2.2 4.8E-05 51.6 18.5 25 734-758 207-234 (535)
261 PF00435 Spectrin: Spectrin re 94.2 0.92 2E-05 40.4 11.9 100 630-743 4-103 (105)
262 TIGR01000 bacteriocin_acc bact 94.2 1.1 2.3E-05 52.7 15.6 19 724-742 288-306 (457)
263 COG1842 PspA Phage shock prote 94.2 2.5 5.4E-05 45.9 17.1 91 616-708 55-145 (225)
264 PRK15178 Vi polysaccharide exp 94.2 1.1 2.5E-05 52.7 15.6 15 730-744 372-386 (434)
265 KOG1853 LIS1-interacting prote 94.2 4.4 9.6E-05 44.7 18.6 28 656-683 92-119 (333)
266 KOG4593 Mitotic checkpoint pro 94.1 3.2 7E-05 51.1 19.5 23 715-737 277-299 (716)
267 PF14915 CCDC144C: CCDC144C pr 94.1 3.3 7.2E-05 46.6 18.2 28 716-743 217-244 (305)
268 PF13514 AAA_27: AAA domain 94.1 3 6.5E-05 54.4 20.8 57 676-732 896-952 (1111)
269 TIGR00634 recN DNA repair prot 94.1 1.1 2.3E-05 54.2 15.7 51 692-742 324-375 (563)
270 KOG1003 Actin filament-coating 94.0 4.1 8.8E-05 43.5 17.6 88 658-747 70-160 (205)
271 TIGR00634 recN DNA repair prot 94.0 2 4.2E-05 52.1 17.8 90 649-747 302-395 (563)
272 TIGR02338 gimC_beta prefoldin, 94.0 1.3 2.9E-05 42.5 13.2 36 618-653 8-43 (110)
273 PRK11519 tyrosine kinase; Prov 94.0 2.2 4.8E-05 53.1 18.5 122 626-747 266-400 (719)
274 KOG4809 Rab6 GTPase-interactin 93.9 2.7 5.8E-05 50.4 17.8 131 615-754 333-469 (654)
275 PF13514 AAA_27: AAA domain 93.9 2.5 5.5E-05 55.1 19.7 69 676-744 242-327 (1111)
276 PF15254 CCDC14: Coiled-coil d 93.9 2.5 5.4E-05 52.5 18.0 43 666-708 498-540 (861)
277 PRK10476 multidrug resistance 93.9 2 4.3E-05 48.5 16.5 54 650-703 123-179 (346)
278 KOG0018 Structural maintenance 93.9 1.1 2.5E-05 56.9 15.5 72 637-708 679-757 (1141)
279 PRK10884 SH3 domain-containing 93.9 0.79 1.7E-05 49.1 12.5 18 611-628 98-115 (206)
280 PRK09343 prefoldin subunit bet 93.9 1.8 3.8E-05 42.6 14.0 37 617-653 11-47 (121)
281 PRK03947 prefoldin subunit alp 93.9 1.5 3.1E-05 43.6 13.6 23 718-740 113-135 (140)
282 PF15294 Leu_zip: Leucine zipp 93.7 1.4 3E-05 49.2 14.3 86 648-736 190-276 (278)
283 PF06120 Phage_HK97_TLTM: Tail 93.7 3.4 7.3E-05 46.8 17.5 92 639-739 72-167 (301)
284 PF07798 DUF1640: Protein of u 93.7 6 0.00013 41.1 18.3 31 648-678 73-103 (177)
285 COG5185 HEC1 Protein involved 93.6 1.4 3E-05 52.0 14.6 30 679-708 333-362 (622)
286 PF09602 PhaP_Bmeg: Polyhydrox 93.6 6 0.00013 41.2 17.6 50 690-741 85-135 (165)
287 PF09730 BicD: Microtubule-ass 93.6 2 4.3E-05 53.6 16.7 120 618-747 46-177 (717)
288 PF14988 DUF4515: Domain of un 93.5 8.6 0.00019 41.3 19.5 20 714-733 164-183 (206)
289 KOG1899 LAR transmembrane tyro 93.5 2.2 4.8E-05 51.8 16.3 122 613-741 139-266 (861)
290 COG1382 GimC Prefoldin, chaper 93.5 2.4 5.1E-05 42.1 13.9 26 629-654 15-40 (119)
291 PF09304 Cortex-I_coil: Cortex 93.5 3.2 7E-05 40.4 14.5 86 611-696 14-99 (107)
292 PF09728 Taxilin: Myosin-like 93.5 3.8 8.2E-05 46.4 17.6 111 614-730 30-152 (309)
293 PF06160 EzrA: Septation ring 93.4 6.5 0.00014 47.9 20.6 16 718-733 405-420 (560)
294 PF05010 TACC: Transforming ac 93.4 5.6 0.00012 42.8 17.8 27 716-742 178-204 (207)
295 PF00769 ERM: Ezrin/radixin/mo 93.4 4.1 9E-05 44.7 17.3 49 636-684 35-83 (246)
296 PF14788 EF-hand_10: EF hand; 93.4 0.19 4.1E-06 42.8 5.4 47 26-72 1-49 (51)
297 KOG4251 Calcium binding protei 93.4 0.055 1.2E-06 58.7 2.8 62 436-497 98-164 (362)
298 COG4026 Uncharacterized protei 93.3 1.3 2.8E-05 47.9 12.8 12 660-671 154-165 (290)
299 cd00632 Prefoldin_beta Prefold 93.3 1.5 3.2E-05 41.8 12.1 32 622-653 8-39 (105)
300 COG0497 RecN ATPase involved i 93.3 1.7 3.7E-05 52.7 15.3 90 648-746 297-390 (557)
301 COG5185 HEC1 Protein involved 93.2 4.6 9.9E-05 47.9 17.9 80 600-679 282-361 (622)
302 COG1842 PspA Phage shock prote 93.2 6.7 0.00015 42.7 18.3 46 679-733 95-140 (225)
303 TIGR02894 DNA_bind_RsfA transc 93.2 1.3 2.8E-05 45.8 12.2 58 677-743 98-155 (161)
304 KOG0995 Centromere-associated 93.2 3.8 8.2E-05 49.6 17.6 63 439-507 107-173 (581)
305 PF05335 DUF745: Protein of un 93.1 8.4 0.00018 41.0 18.4 13 718-730 149-161 (188)
306 TIGR02977 phageshock_pspA phag 93.1 4.7 0.0001 43.2 16.9 53 656-708 93-145 (219)
307 PF14662 CCDC155: Coiled-coil 93.1 12 0.00025 40.1 19.2 31 599-632 25-55 (193)
308 smart00502 BBC B-Box C-termina 93.0 7.9 0.00017 36.3 17.0 17 692-708 74-90 (127)
309 KOG4251 Calcium binding protei 93.0 0.075 1.6E-06 57.8 3.2 65 438-502 280-346 (362)
310 PRK10869 recombination and rep 93.0 3.4 7.3E-05 50.2 17.4 85 649-746 297-389 (553)
311 PF08581 Tup_N: Tup N-terminal 93.0 1.6 3.5E-05 40.3 11.3 52 657-708 6-57 (79)
312 PF13805 Pil1: Eisosome compon 93.0 9.1 0.0002 42.9 19.1 74 637-710 85-158 (271)
313 KOG2129 Uncharacterized conser 93.0 2.3 5.1E-05 49.5 14.9 95 614-708 166-271 (552)
314 TIGR00998 8a0101 efflux pump m 92.9 3.3 7.1E-05 46.0 16.1 26 646-671 113-138 (334)
315 PF06008 Laminin_I: Laminin Do 92.9 5.4 0.00012 43.7 17.4 16 685-700 187-202 (264)
316 PF07851 TMPIT: TMPIT-like pro 92.9 0.65 1.4E-05 52.9 10.5 84 613-696 4-88 (330)
317 KOG0979 Structural maintenance 92.9 4.6 9.9E-05 51.6 18.4 55 614-668 277-331 (1072)
318 COG3206 GumC Uncharacterized p 92.9 1.1 2.5E-05 52.5 12.9 95 630-730 288-383 (458)
319 PF00769 ERM: Ezrin/radixin/mo 92.8 3.8 8.3E-05 44.9 16.0 30 679-708 64-93 (246)
320 KOG0963 Transcription factor/C 92.8 8.5 0.00018 47.1 19.9 17 751-771 355-371 (629)
321 KOG4673 Transcription factor T 92.8 7.1 0.00015 48.1 19.1 45 609-653 463-510 (961)
322 PF13870 DUF4201: Domain of un 92.8 6.4 0.00014 40.7 16.8 106 623-733 52-158 (177)
323 TIGR01010 BexC_CtrB_KpsE polys 92.8 5.2 0.00011 45.5 17.7 120 628-747 171-308 (362)
324 cd07653 F-BAR_CIP4-like The F- 92.8 9.8 0.00021 41.0 18.9 54 636-689 100-153 (251)
325 PRK12705 hypothetical protein; 92.7 11 0.00024 45.6 20.9 29 734-762 180-211 (508)
326 PF06160 EzrA: Septation ring 92.7 4.1 9E-05 49.5 17.7 15 694-708 376-390 (560)
327 KOG0999 Microtubule-associated 92.7 4.7 0.0001 48.6 17.1 24 685-708 109-132 (772)
328 PRK10698 phage shock protein P 92.6 6.8 0.00015 42.4 17.4 51 658-708 95-145 (222)
329 KOG0038 Ca2+-binding kinase in 92.6 0.19 4E-06 51.3 5.1 55 15-69 113-174 (189)
330 TIGR03545 conserved hypothetic 92.6 1.2 2.5E-05 54.2 12.7 67 608-682 173-239 (555)
331 PF15066 CAGE1: Cancer-associa 92.6 7.2 0.00016 46.2 18.3 109 636-744 392-516 (527)
332 PF12126 DUF3583: Protein of u 92.5 1.9 4.2E-05 48.2 13.2 38 692-733 70-108 (324)
333 KOG0963 Transcription factor/C 92.5 4.4 9.4E-05 49.4 17.0 12 732-743 377-388 (629)
334 cd00176 SPEC Spectrin repeats, 92.5 13 0.00027 37.2 19.0 28 716-743 182-209 (213)
335 PRK10246 exonuclease subunit S 92.4 8.7 0.00019 50.1 21.0 28 718-745 736-763 (1047)
336 PF10498 IFT57: Intra-flagella 92.4 5 0.00011 46.5 16.9 8 635-642 221-228 (359)
337 PF06120 Phage_HK97_TLTM: Tail 92.4 4.7 0.0001 45.7 16.2 29 679-707 137-165 (301)
338 PF14788 EF-hand_10: EF hand; 92.4 0.36 7.9E-06 41.1 5.8 47 455-501 1-49 (51)
339 PRK09343 prefoldin subunit bet 92.3 2.7 5.9E-05 41.3 12.7 36 618-653 5-40 (121)
340 PF12329 TMF_DNA_bd: TATA elem 92.3 1.2 2.7E-05 40.3 9.5 61 648-708 5-65 (74)
341 PF09738 DUF2051: Double stran 92.3 1.6 3.6E-05 49.2 12.6 55 686-749 122-179 (302)
342 TIGR03794 NHPM_micro_HlyD NHPM 92.2 4.5 9.8E-05 47.0 16.6 25 719-743 226-250 (421)
343 TIGR02338 gimC_beta prefoldin, 92.2 1.8 4E-05 41.6 11.2 32 622-653 5-36 (110)
344 PF14915 CCDC144C: CCDC144C pr 92.2 10 0.00022 42.8 18.2 111 622-734 139-249 (305)
345 KOG2129 Uncharacterized conser 92.2 7.5 0.00016 45.5 17.5 70 656-744 247-316 (552)
346 TIGR03752 conj_TIGR03752 integ 92.1 2 4.3E-05 51.0 13.4 13 766-778 171-183 (472)
347 PF04582 Reo_sigmaC: Reovirus 92.1 0.24 5.2E-06 56.1 5.8 126 613-747 35-162 (326)
348 KOG4065 Uncharacterized conser 92.1 0.26 5.6E-06 48.5 5.2 57 14-70 71-143 (144)
349 PF15290 Syntaphilin: Golgi-lo 92.1 2.7 5.8E-05 46.9 13.5 78 649-733 83-165 (305)
350 PF05700 BCAS2: Breast carcino 92.1 9.1 0.0002 41.2 17.5 83 632-733 134-216 (221)
351 PF09738 DUF2051: Double stran 92.0 7.5 0.00016 44.1 17.4 57 617-673 102-158 (302)
352 cd07647 F-BAR_PSTPIP The F-BAR 92.0 9.5 0.00021 41.3 17.7 44 642-685 100-143 (239)
353 PF07889 DUF1664: Protein of u 92.0 2.9 6.3E-05 41.8 12.5 56 634-689 68-123 (126)
354 PF09755 DUF2046: Uncharacteri 92.0 15 0.00034 41.7 19.5 42 691-734 157-199 (310)
355 KOG0243 Kinesin-like protein [ 91.9 7 0.00015 50.4 18.6 56 611-666 446-508 (1041)
356 KOG0962 DNA repair protein RAD 91.9 3.4 7.4E-05 54.1 16.1 64 672-744 874-939 (1294)
357 TIGR02971 heterocyst_DevB ABC 91.8 6.8 0.00015 43.6 16.8 25 720-744 179-203 (327)
358 KOG4460 Nuclear pore complex, 91.7 4.3 9.4E-05 48.8 15.4 63 676-743 669-732 (741)
359 PF08702 Fib_alpha: Fibrinogen 91.7 10 0.00022 38.8 16.3 16 692-707 113-128 (146)
360 PF01920 Prefoldin_2: Prefoldi 91.7 0.78 1.7E-05 42.6 7.9 24 624-647 9-32 (106)
361 KOG4674 Uncharacterized conser 91.7 4.9 0.00011 54.4 17.5 127 620-748 384-510 (1822)
362 PF07106 TBPIP: Tat binding pr 91.7 1.9 4.2E-05 44.1 11.4 64 654-726 71-136 (169)
363 KOG2991 Splicing regulator [RN 91.7 19 0.00041 40.1 19.0 21 664-684 179-199 (330)
364 KOG1924 RhoA GTPase effector D 91.6 1.1 2.5E-05 55.3 11.0 79 660-742 941-1026(1102)
365 PRK03947 prefoldin subunit alp 91.6 4.6 0.0001 40.1 13.6 44 681-733 92-135 (140)
366 KOG0946 ER-Golgi vesicle-tethe 91.6 2.6 5.7E-05 52.5 13.9 52 657-708 680-731 (970)
367 KOG0978 E3 ubiquitin ligase in 91.6 6.9 0.00015 48.7 17.6 112 615-726 519-641 (698)
368 PF13166 AAA_13: AAA domain 91.6 4.4 9.5E-05 49.9 16.3 13 734-746 462-474 (712)
369 KOG1924 RhoA GTPase effector D 91.5 0.63 1.4E-05 57.4 8.7 32 472-504 745-776 (1102)
370 KOG0946 ER-Golgi vesicle-tethe 91.5 4.7 0.0001 50.5 15.8 9 142-150 242-250 (970)
371 PF15397 DUF4618: Domain of un 91.5 21 0.00046 39.8 19.6 24 611-634 86-109 (258)
372 KOG0239 Kinesin (KAR3 subfamil 91.5 3.5 7.7E-05 51.2 15.2 10 774-783 364-373 (670)
373 smart00054 EFh EF-hand, calciu 91.4 0.22 4.7E-06 33.7 3.0 24 442-465 3-26 (29)
374 COG0497 RecN ATPase involved i 91.4 11 0.00024 45.9 18.9 41 601-641 159-199 (557)
375 PF15290 Syntaphilin: Golgi-lo 91.4 2.3 5E-05 47.4 12.1 85 613-713 82-173 (305)
376 PF07200 Mod_r: Modifier of ru 91.4 5.2 0.00011 40.0 13.9 117 620-746 10-143 (150)
377 smart00054 EFh EF-hand, calciu 91.4 0.23 4.9E-06 33.6 3.0 27 474-500 1-27 (29)
378 PF01576 Myosin_tail_1: Myosin 91.4 0.058 1.3E-06 68.1 0.0 110 615-733 196-305 (859)
379 TIGR02231 conserved hypothetic 91.3 1.2 2.7E-05 53.1 11.0 35 690-733 138-172 (525)
380 COG3206 GumC Uncharacterized p 91.2 6.5 0.00014 46.3 16.6 113 622-743 287-403 (458)
381 PRK03598 putative efflux pump 91.2 5.7 0.00012 44.5 15.4 54 685-742 147-200 (331)
382 PF02841 GBP_C: Guanylate-bind 91.1 6.5 0.00014 43.9 15.7 18 716-733 280-297 (297)
383 KOG0046 Ca2+-binding actin-bun 91.1 0.47 1E-05 56.4 6.9 64 7-71 16-84 (627)
384 KOG4603 TBP-1 interacting prot 91.0 2.9 6.3E-05 43.7 11.7 35 621-655 80-114 (201)
385 KOG1003 Actin filament-coating 91.0 19 0.00041 38.7 17.8 93 616-708 49-141 (205)
386 COG0419 SbcC ATPase involved i 91.0 11 0.00024 48.4 19.4 6 460-465 144-149 (908)
387 TIGR00293 prefoldin, archaeal 91.0 0.89 1.9E-05 44.2 7.8 24 685-708 88-111 (126)
388 PRK00286 xseA exodeoxyribonucl 90.8 8.3 0.00018 45.2 16.9 10 777-786 396-405 (438)
389 PF12777 MT: Microtubule-bindi 90.8 1.2 2.5E-05 50.8 9.6 93 632-733 219-311 (344)
390 PF02994 Transposase_22: L1 tr 90.7 0.59 1.3E-05 53.9 7.2 44 636-679 86-129 (370)
391 KOG0982 Centrosomal protein Nu 90.7 16 0.00034 43.2 18.2 80 629-708 285-364 (502)
392 KOG4065 Uncharacterized conser 90.6 0.43 9.3E-06 47.0 5.1 65 432-498 62-142 (144)
393 COG5283 Phage-related tail pro 90.6 9.1 0.0002 49.9 17.8 70 607-676 72-141 (1213)
394 PF04582 Reo_sigmaC: Reovirus 90.6 0.45 9.8E-06 54.0 6.0 93 613-705 63-155 (326)
395 PRK10246 exonuclease subunit S 90.5 12 0.00026 48.8 19.5 39 670-708 718-756 (1047)
396 COG4026 Uncharacterized protei 90.5 1.8 3.9E-05 46.8 10.0 24 623-646 131-154 (290)
397 KOG2643 Ca2+ binding protein, 90.5 0.14 3.1E-06 59.5 2.1 56 20-75 209-264 (489)
398 TIGR02473 flagell_FliJ flagell 90.5 15 0.00032 35.9 15.8 82 617-698 17-104 (141)
399 PF10267 Tmemb_cc2: Predicted 90.4 20 0.00044 42.2 19.2 94 607-703 220-318 (395)
400 PF14073 Cep57_CLD: Centrosome 90.4 16 0.00034 38.7 16.5 17 727-743 141-158 (178)
401 TIGR03319 YmdA_YtgF conserved 90.3 16 0.00035 44.2 19.0 7 763-769 192-198 (514)
402 PF13094 CENP-Q: CENP-Q, a CEN 90.3 2.6 5.7E-05 42.8 10.8 30 660-689 46-75 (160)
403 COG0419 SbcC ATPase involved i 90.3 19 0.0004 46.3 20.6 14 694-707 658-671 (908)
404 PRK00409 recombination and DNA 90.2 8.1 0.00018 49.0 17.1 15 762-776 636-650 (782)
405 PF09731 Mitofilin: Mitochondr 90.2 20 0.00043 43.5 19.8 52 638-689 334-391 (582)
406 KOG0040 Ca2+-binding actin-bun 90.2 0.53 1.2E-05 61.2 6.7 64 7-70 2250-2322(2399)
407 PF15456 Uds1: Up-regulated Du 90.2 3.9 8.3E-05 40.8 11.4 25 718-742 86-110 (124)
408 PF09403 FadA: Adhesion protei 90.2 5.2 0.00011 40.1 12.3 92 629-735 29-122 (126)
409 PF13949 ALIX_LYPXL_bnd: ALIX 90.1 9.5 0.00021 41.9 15.7 78 629-706 24-114 (296)
410 PF09279 EF-hand_like: Phospho 90.1 0.56 1.2E-05 42.2 5.1 59 440-499 1-67 (83)
411 KOG4657 Uncharacterized conser 90.0 9.3 0.0002 41.7 14.8 30 685-723 88-117 (246)
412 cd00632 Prefoldin_beta Prefold 90.0 6.9 0.00015 37.3 12.7 31 624-654 3-33 (105)
413 PF08581 Tup_N: Tup N-terminal 90.0 3.5 7.5E-05 38.1 10.2 61 618-678 9-69 (79)
414 PF05266 DUF724: Protein of un 90.0 5.1 0.00011 42.5 12.9 13 718-730 164-176 (190)
415 PF05335 DUF745: Protein of un 90.0 18 0.00038 38.6 16.8 16 718-733 156-171 (188)
416 PF06705 SF-assemblin: SF-asse 90.0 18 0.00038 39.4 17.5 10 774-783 190-199 (247)
417 KOG3091 Nuclear pore complex, 90.0 6 0.00013 47.2 14.5 66 613-678 362-427 (508)
418 PRK12704 phosphodiesterase; Pr 90.0 18 0.00039 43.9 19.0 7 763-769 198-204 (520)
419 cd07671 F-BAR_PSTPIP1 The F-BA 89.8 27 0.00058 38.4 18.6 67 642-708 100-171 (242)
420 PRK10361 DNA recombination pro 89.8 34 0.00073 41.3 20.6 9 718-726 145-153 (475)
421 COG3096 MukB Uncharacterized p 89.7 16 0.00035 45.6 17.9 102 630-733 987-1107(1480)
422 PF14073 Cep57_CLD: Centrosome 89.7 6.4 0.00014 41.5 13.0 34 695-730 139-172 (178)
423 PF09787 Golgin_A5: Golgin sub 89.7 16 0.00034 44.1 18.2 67 632-698 230-310 (511)
424 cd07655 F-BAR_PACSIN The F-BAR 89.6 22 0.00047 39.2 17.9 66 643-708 114-186 (258)
425 PF05483 SCP-1: Synaptonemal c 89.6 20 0.00044 44.5 18.7 85 622-710 185-274 (786)
426 PRK06569 F0F1 ATP synthase sub 89.6 6.4 0.00014 40.7 12.8 34 643-676 97-131 (155)
427 PRK00106 hypothetical protein; 89.6 23 0.00049 43.3 19.4 7 763-769 213-219 (535)
428 cd07672 F-BAR_PSTPIP2 The F-BA 89.5 35 0.00075 37.5 19.2 43 643-685 102-144 (240)
429 smart00502 BBC B-Box C-termina 89.4 19 0.00041 33.8 17.3 17 689-705 85-101 (127)
430 KOG1850 Myosin-like coiled-coi 89.4 32 0.0007 39.4 18.8 13 735-747 190-202 (391)
431 PF10805 DUF2730: Protein of u 89.3 2.7 5.9E-05 40.5 9.4 50 675-733 48-99 (106)
432 PRK10929 putative mechanosensi 89.3 15 0.00033 48.2 18.7 51 613-663 187-237 (1109)
433 COG4913 Uncharacterized protei 89.3 15 0.00032 45.9 17.3 126 650-783 350-493 (1104)
434 KOG0239 Kinesin (KAR3 subfamil 89.3 5.2 0.00011 49.8 14.1 11 734-744 304-314 (670)
435 KOG0999 Microtubule-associated 89.1 22 0.00048 43.1 18.2 33 622-654 95-127 (772)
436 PF05557 MAD: Mitotic checkpoi 89.1 0.12 2.6E-06 64.1 0.0 21 642-662 122-142 (722)
437 KOG2891 Surface glycoprotein [ 89.0 8.8 0.00019 42.9 14.0 19 479-497 117-135 (445)
438 KOG3478 Prefoldin subunit 6, K 89.0 14 0.00031 36.3 13.8 96 613-709 5-109 (120)
439 PRK00286 xseA exodeoxyribonucl 89.0 11 0.00023 44.3 15.9 34 692-733 352-385 (438)
440 COG4717 Uncharacterized conser 89.0 16 0.00034 46.5 17.5 125 609-733 623-794 (984)
441 PF09728 Taxilin: Myosin-like 89.0 30 0.00066 39.3 18.8 13 767-779 218-230 (309)
442 PRK07720 fliJ flagellar biosyn 89.0 16 0.00034 36.6 14.9 81 620-700 23-109 (146)
443 TIGR03752 conj_TIGR03752 integ 88.9 3.2 7E-05 49.3 11.4 6 754-759 152-157 (472)
444 TIGR02231 conserved hypothetic 88.9 3.1 6.7E-05 49.9 11.6 35 676-710 138-172 (525)
445 KOG2751 Beclin-like protein [S 88.7 13 0.00027 44.0 15.7 25 711-735 244-268 (447)
446 PF14282 FlxA: FlxA-like prote 88.7 1.9 4.1E-05 41.5 7.9 25 676-700 51-75 (106)
447 KOG4360 Uncharacterized coiled 88.7 10 0.00022 45.5 15.1 21 929-949 528-550 (596)
448 COG3524 KpsE Capsule polysacch 88.6 7.7 0.00017 44.0 13.4 40 656-695 252-293 (372)
449 PF05278 PEARLI-4: Arabidopsis 88.6 16 0.00035 40.8 15.9 50 659-708 204-253 (269)
450 PF15035 Rootletin: Ciliary ro 88.6 13 0.00028 39.3 14.6 35 606-643 5-39 (182)
451 COG1730 GIM5 Predicted prefold 88.6 10 0.00023 38.8 13.4 20 689-708 93-112 (145)
452 PF09766 FimP: Fms-interacting 88.5 11 0.00024 43.4 15.3 48 691-747 109-156 (355)
453 cd08915 V_Alix_like Protein-in 88.5 12 0.00026 42.4 15.4 81 629-709 72-166 (342)
454 PRK12705 hypothetical protein; 88.5 35 0.00077 41.4 19.8 15 642-656 64-78 (508)
455 KOG4603 TBP-1 interacting prot 88.3 24 0.00052 37.3 15.8 43 647-689 78-120 (201)
456 PF03962 Mnd1: Mnd1 family; I 88.3 11 0.00023 40.0 13.7 30 613-642 69-98 (188)
457 KOG4460 Nuclear pore complex, 88.3 3.3 7.1E-05 49.8 10.8 122 632-772 586-723 (741)
458 PF04949 Transcrip_act: Transc 88.2 26 0.00056 36.2 15.6 99 603-708 34-137 (159)
459 KOG0962 DNA repair protein RAD 88.2 21 0.00046 47.3 18.7 24 661-684 884-907 (1294)
460 PF15450 DUF4631: Domain of un 88.2 12 0.00025 45.2 15.3 59 685-743 94-154 (531)
461 KOG2685 Cystoskeletal protein 88.2 49 0.0011 39.1 19.9 56 620-675 263-319 (421)
462 PF10212 TTKRSYEDQ: Predicted 88.2 9 0.0002 46.2 14.5 30 645-674 459-488 (518)
463 PF06818 Fez1: Fez1; InterPro 88.1 31 0.00067 37.3 17.0 71 596-666 21-91 (202)
464 PF05266 DUF724: Protein of un 87.9 11 0.00023 40.2 13.5 52 689-749 130-184 (190)
465 PRK05689 fliJ flagellar biosyn 87.9 29 0.00062 34.6 16.0 84 617-700 20-109 (147)
466 KOG2010 Double stranded RNA bi 87.8 5.1 0.00011 45.5 11.5 65 644-708 136-200 (405)
467 PRK10476 multidrug resistance 87.8 20 0.00042 40.6 16.5 17 690-706 159-175 (346)
468 PF14197 Cep57_CLD_2: Centroso 87.7 4.8 0.0001 36.3 9.3 59 617-675 9-67 (69)
469 PF11172 DUF2959: Protein of u 87.7 42 0.0009 36.3 17.6 106 632-737 62-187 (201)
470 TIGR03794 NHPM_micro_HlyD NHPM 87.7 22 0.00049 41.3 17.3 21 716-736 230-250 (421)
471 PF02050 FliJ: Flagellar FliJ 87.6 23 0.0005 32.7 17.0 37 659-695 49-85 (123)
472 PF15456 Uds1: Up-regulated Du 87.6 12 0.00026 37.4 12.8 93 615-708 24-120 (124)
473 PF06428 Sec2p: GDP/GTP exchan 87.6 0.44 9.6E-06 45.7 2.8 77 634-710 8-85 (100)
474 PF05010 TACC: Transforming ac 87.5 46 0.001 36.0 18.5 40 690-734 118-157 (207)
475 PF04375 HemX: HemX; InterPro 87.5 23 0.00049 41.1 17.0 10 724-733 177-186 (372)
476 PF09731 Mitofilin: Mitochondr 87.4 43 0.00094 40.7 20.1 17 660-676 316-332 (582)
477 KOG4403 Cell surface glycoprot 87.4 23 0.0005 41.9 16.6 28 439-466 68-95 (575)
478 PF09325 Vps5: Vps5 C terminal 87.4 38 0.00082 35.8 17.5 83 636-730 123-205 (236)
479 KOG3091 Nuclear pore complex, 87.3 3.3 7.1E-05 49.3 10.1 47 623-669 358-404 (508)
480 PF09789 DUF2353: Uncharacteri 87.3 38 0.00082 38.9 18.1 42 648-689 72-113 (319)
481 PF13863 DUF4200: Domain of un 87.2 30 0.00064 33.5 15.3 13 635-647 40-52 (126)
482 PF09403 FadA: Adhesion protei 87.2 25 0.00053 35.4 14.7 10 669-678 89-98 (126)
483 COG4477 EzrA Negative regulato 87.2 18 0.00039 43.8 16.0 36 673-708 372-407 (570)
484 PRK03598 putative efflux pump 87.1 13 0.00028 41.7 14.5 19 718-736 183-201 (331)
485 PF14362 DUF4407: Domain of un 87.1 16 0.00035 40.6 15.1 106 616-743 108-230 (301)
486 KOG0247 Kinesin-like protein [ 87.1 10 0.00023 47.2 14.3 131 594-750 488-619 (809)
487 PF02994 Transposase_22: L1 tr 86.9 1.4 3.1E-05 50.8 7.0 105 625-738 75-183 (370)
488 KOG1962 B-cell receptor-associ 86.9 6.5 0.00014 42.6 11.3 90 620-723 121-210 (216)
489 PF08172 CASP_C: CASP C termin 86.8 6.9 0.00015 43.2 11.8 76 657-741 1-131 (248)
490 TIGR00237 xseA exodeoxyribonuc 86.8 15 0.00033 43.4 15.4 111 621-743 256-368 (432)
491 PF05384 DegS: Sensor protein 86.8 43 0.00093 34.9 19.8 138 599-745 20-158 (159)
492 cd07596 BAR_SNX The Bin/Amphip 86.7 28 0.00062 35.8 15.8 121 611-743 80-201 (218)
493 PRK13923 putative spore coat p 86.7 19 0.0004 38.0 14.1 100 620-741 22-153 (170)
494 PF06248 Zw10: Centromere/kine 86.7 10 0.00023 46.2 14.5 114 607-740 8-123 (593)
495 PF04871 Uso1_p115_C: Uso1 / p 86.7 21 0.00045 36.1 14.1 100 632-747 3-114 (136)
496 PF13805 Pil1: Eisosome compon 86.6 61 0.0013 36.5 21.6 143 590-743 59-214 (271)
497 PF11802 CENP-K: Centromere-as 86.6 25 0.00054 39.4 15.8 133 606-738 16-179 (268)
498 PF10212 TTKRSYEDQ: Predicted 86.6 12 0.00026 45.2 14.2 95 606-719 420-514 (518)
499 PLN03188 kinesin-12 family pro 86.5 20 0.00044 47.2 17.0 137 597-742 968-1150(1320)
500 cd07623 BAR_SNX1_2 The Bin/Amp 86.4 48 0.001 35.8 17.7 127 608-743 14-172 (224)
No 1
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-39 Score=366.34 Aligned_cols=98 Identities=35% Similarity=0.638 Sum_probs=94.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH
Q 002108 425 QSHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMER 504 (965)
Q Consensus 425 ~~~~~Wp~IS~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI~~ 504 (965)
+....| .|....+.+|+++|+.+|+.+.||+|+.++|.+|..++|++..|++||.|.|+|+||+|+.+||++|||||+.
T Consensus 182 ~q~~eW-AVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~liem 260 (1118)
T KOG1029|consen 182 NQLEEW-AVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIEM 260 (1118)
T ss_pred hhhhhc-cccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhheeeeccCCCCcccHHHHHHHHHHHHH
Confidence 335679 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCCCCCCc
Q 002108 505 YREGRPLPTMLPSTIMPDE 523 (965)
Q Consensus 505 ~~~G~~LP~~LPp~L~pp~ 523 (965)
++.|.+||.+||+.|+||+
T Consensus 261 a~sGq~lP~tlP~E~Vpp~ 279 (1118)
T KOG1029|consen 261 AKSGQPLPKTLPPELVPPS 279 (1118)
T ss_pred HhcCCCCCCCCChhhcCcc
Confidence 9999999999999999996
No 2
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-34 Score=344.65 Aligned_cols=586 Identities=29% Similarity=0.379 Sum_probs=359.1
Q ss_pred CccCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcCCCCCh
Q 002108 5 TATNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSKRELTP 84 (965)
Q Consensus 5 ~~~e~~~Y~~vF~~lD~D~DGkISg~Ea~~ff~~SgLp~~~LaqIW~LaD~d~DG~LdreEF~vAm~LV~lAQ~G~~lsp 84 (965)
.+.+...|+.+|..+|+..+|+|++.+++.||..+||+..+|++||.++|..+.|+|++.+||++|+||++||+|+.++.
T Consensus 6 ~~~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~ 85 (847)
T KOG0998|consen 6 SPPGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSGLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSA 85 (847)
T ss_pred CCCccchHHHhhhccCcccCCcccHHHhhhhhhccccchhhhhccccccccccCCccccccccccchHhhhhhcccCcCc
Confidence 55677999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred hhhhhhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCccC
Q 002108 85 DIVKAALYGPASARIPAPQINLAAMPSSHSRVGAPASQVSGAPSPQNVSVRGPQGLGNASTNQQSPPSQSNHFVRTPQAV 164 (965)
Q Consensus 85 e~Lp~~Lipps~~~iP~P~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (965)
+.+ -+....+|+|++.....|.+++... ...+. ..+ ....+.+.+..+...-+.|-...
T Consensus 86 ~~~-----~~~~~~pp~~~~~~~~~~~~~~~~~--~s~~~-------------~~p-~~~~qe~aky~q~f~s~~p~~g~ 144 (847)
T KOG0998|consen 86 KKV-----LPASAVPPPPKISHDTSPPSRPSSS--TSAAP-------------FVP-AITPQEQAKYDQIFRSLSPSNGL 144 (847)
T ss_pred ccc-----ccccCCCCCCccCccCCCcccCCCC--CCCcc-------------cCC-CCCHHHHHHHHHHHhccCCCCCc
Confidence 664 2345667777766665555443321 11111 111 23334444444444444442222
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCcCCCCCcccCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002108 165 LPGTTLHPQQVLSGQSMPSGGTMTAPRPPTSNVSTDWLGGSTVSPLAGSTTQLPNRGSSPSLPQEGFGLPASSLAPSVQP 244 (965)
Q Consensus 165 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~g~~p~~~~~~~~~~~~~~~~~~~~ 244 (965)
. .|.-..+..-++.|..+|++.... . +-....| -|.....+.+.+
T Consensus 145 ~------------------sg~~~~pil~~s~Lp~~~l~~iw~---------l------~d~d~~g-~Ld~~ef~~am~- 189 (847)
T KOG0998|consen 145 L------------------SGDKAKPILLNSKLPSDVLGRIWE---------L------SDIDKDG-NLDRDEFAVAMH- 189 (847)
T ss_pred c------------------ccchhhhhhhcCCCChhhhccccc---------c------ccccccC-CCChhhhhhhhh-
Confidence 1 222344556677788888874332 0 1111111 000001111111
Q ss_pred CCCCCCCCCCCCCCCCCccccccCCcccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccceeccCC--
Q 002108 245 RPPITSGGRAGSPLAGTTSQVSDRGISASSTLDRFGLPASSVAPSVQPRPPGTSAQTPATAPKPQAPDSKSLVVSGNG-- 322 (965)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g-- 322 (965)
+ +....+...-+++.... ..+...++. ..+++|
T Consensus 190 -----------------l------------~~~~l~~~~~p~P~~~p---------------~~lIpps~~-~~~~~~~~ 224 (847)
T KOG0998|consen 190 -----------------L------------INDLLNGNSEPVPSRLP---------------PSLIPPSKS-ELSANSSS 224 (847)
T ss_pred -----------------H------------HHHHhhcccCCCCccCC---------------cccCCcchh-cccccCcc
Confidence 0 00000000000000000 000111122 122333
Q ss_pred cCCCCCCCCcccCCCCCCCCCCccCCCCCCCCCcccCCCCCCCCCCCCCCccccccccCCCCCCccccCCcccccccccc
Q 002108 323 FSSDSLFGDVFSASPVQPKQDVAISGSVPTSTASVPASPAPKPSLKAGPVEPVQHAFSQPPVGGQYQQGQSAGKQNQQFA 402 (965)
Q Consensus 323 ~~s~~~~~d~f~a~~~~~~~~~~~~~~~p~s~~~~p~~~~~~p~~~~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (965)
++....++. ...+..+ ...+++.+ ..++...+++..
T Consensus 225 ~~~~~~~~~------~~~~~~~------~~~~~l~~--------------------------~s~~~~~~s~~~------ 260 (847)
T KOG0998|consen 225 KAIPFSQPF------LASMASP------TTLSSLVD--------------------------LSALNSNPSLSS------ 260 (847)
T ss_pred ccccccccc------ccccccc------cccccccc--------------------------hhcccCCccccc------
Confidence 222222221 0000000 00111111 111111111100
Q ss_pred ccCCCCCCCCCccCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHH
Q 002108 403 VKSTPAAASTGFPIGALNSTSSQSHVPW-PKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDL 481 (965)
Q Consensus 403 ~~~~~~~~s~~~~~g~~~~~~~~~~~~W-p~IS~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks~Lp~eeL~~IW~L 481 (965)
..+ ..+-+....| +.|++.++.+|.++|..+|++++|+|++.+++.+|+.+||+...|+++|.+
T Consensus 261 ---------~~~------~~~~q~~~s~~~~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl~~~~l~~~w~l 325 (847)
T KOG0998|consen 261 ---------LSL------ASSMQLIVSWSPKVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGLSKPRLAHVWLL 325 (847)
T ss_pred ---------ccc------ccccccccccCcccChHHHHHHHHHHHhccccCCCcccccccccccccCCCChhhhhhhhhh
Confidence 000 0111233445 469999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCccCHHHHHHHHHHHHHH-hcCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCC-
Q 002108 482 SDQDNDGMLSLKEFCTALYLMERY-REGRPLPTMLPSTIMPDEALFSTTSQPQAPHVSGTWGPVAGVQQPH--ASRPPT- 557 (965)
Q Consensus 482 aD~D~DGkLs~dEFvvAM~LI~~~-~~G~~LP~~LPp~L~pp~~~~~~t~~P~~~~~~~~~~~~~~~~Q~~--ga~~~~- 557 (965)
+|++++|.|+++|||++||++.++ ++|+.||.+||..|+|+...+.........++ ..|.....-.++. ....+.
T Consensus 326 ~d~~n~~~ls~~ef~~~~~~~~~~~~~g~~lP~vl~~s~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 404 (847)
T KOG0998|consen 326 ADTQNTGTLSKDEFALAMHLLEQKRAEGRSLPSVLPSSLIPSENRKQTNPTTRASTA-ESPSSEQSSLAELKSLALSIAS 404 (847)
T ss_pred cchhccCcccccccchhhhhhhhhhhcCCCCcccccccccCccccccCCcccccccc-ccCCcccccccccccccccccc
Confidence 999999999999999999999998 89999999999999999643222111111111 1122111100010 000000
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHhhhcCHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 558 ---GKPPRPFPVPQADRSVQTTPQKSKVPELEKHLMDQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCST 634 (965)
Q Consensus 558 ---g~Pp~p~~~pq~~~~~~~~q~~s~~P~LEddll~qld~ee~~~Lns~~qeaeEa~kKl~eaE~ei~~~~eKi~~y~s 634 (965)
.++.. .+.+......+.....++++. ..++.+.+....+-.+ +.-++++++.++...+..+.++...++.
T Consensus 405 ~~~~k~~~----~~~~~~~~~~~~~~~s~~~~~--~~~l~~~~s~~~~l~~-~~~~~~~k~~e~~~~~s~s~~~~~~~~~ 477 (847)
T KOG0998|consen 405 NPREKPRL----EQSSSEAPRTTPVKTSPVLEL--ANELSNLASTSQQLPA-QKDTVQDKLNELDAQKSQSKEKFSTTRK 477 (847)
T ss_pred cccccccc----ccccccccccCcccccccccc--hhhhhhcchhhhcccc-ccchhhhhhhhhhhhhhHHHhhhhhhhh
Confidence 12211 111111111222222222222 3444454433333222 2233567888889999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002108 635 KMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESG 714 (965)
Q Consensus 635 KmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~ 714 (965)
++++..++.++|..+|+++..++...+++++++.++|++..+|+..|+..+.
T Consensus 478 k~~~~~~~~s~~~~~~~~~~~~~~~~~~ei~~~~~~ln~~~qq~~~l~~~v~---------------------------- 529 (847)
T KOG0998|consen 478 KKQEEPQWISSLDNDLNLLPLQLSNDNREISSLEKELNELQQQLSVLEGSVK---------------------------- 529 (847)
T ss_pred hhhccccccccccchhhhcccccccchhhHHHHHHHHhhhHHHHhHHhhhhh----------------------------
Confidence 9999999999999999999999999999999998666665554433222221
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhCccccccccccccCCCCCCcccccccchhhhhcccccccchhhhhhhcccc
Q 002108 715 DGTLQQHADHIQNELEELVKILNDRCKQYGLRAKPTLLVELPFGWQPGIQEGTADWDEDWDKLEDEGFTFVKELTLEVQN 794 (965)
Q Consensus 715 n~~LKeri~~iNsel~eL~K~l~E~~qq~Gl~~K~~~~~E~~~g~~~~~qe~a~~w~e~w~~~~d~~f~~v~~~~~~~~~ 794 (965)
.+..++++|.+.|++.|.++....+..+.+++.|.|+..++|....|+++|++..+ ..+++|...+++
T Consensus 530 ---------~~~~~ve~l~~~L~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~k~~n~~~~---~s~~~l~~~~e~ 597 (847)
T KOG0998|consen 530 ---------AIESQVENLQKELLDLIYEMADTRSKSTLLDDSFKVGMELFEQLLKGSKLVNGKDQ---NSSTELAGYLEG 597 (847)
T ss_pred ---------hhhhhhhhhHhHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhhhhhccccccc---cchhhhhhhccc
Confidence 11112556667777777777777788888899999999999999999999999888 677888888888
Q ss_pred cCCC
Q 002108 795 VVAP 798 (965)
Q Consensus 795 ~~~~ 798 (965)
++..
T Consensus 598 ~~~~ 601 (847)
T KOG0998|consen 598 TING 601 (847)
T ss_pred cccc
Confidence 8874
No 3
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=99.83 E-value=4.5e-21 Score=180.46 Aligned_cols=93 Identities=32% Similarity=0.552 Sum_probs=82.4
Q ss_pred CccCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcCC--CC
Q 002108 5 TATNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSKR--EL 82 (965)
Q Consensus 5 ~~~e~~~Y~~vF~~lD~D~DGkISg~Ea~~ff~~SgLp~~~LaqIW~LaD~d~DG~LdreEF~vAm~LV~lAQ~G~--~l 82 (965)
++.|+..|+.+|+.+|. .+|+|++++++.||.+||||.++|++||+|+|.|+||+|+++||++|||||.++++|+ +|
T Consensus 5 s~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~~~~~l 83 (104)
T PF12763_consen 5 SPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKLNGNGKPL 83 (104)
T ss_dssp SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHHTTS--
T ss_pred CHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcCCCCCC
Confidence 67889999999999995 7999999999999999999999999999999999999999999999999999998775 66
Q ss_pred ChhhhhhhcCCCCCCCC
Q 002108 83 TPDIVKAALYGPASARI 99 (965)
Q Consensus 83 spe~Lp~~Lipps~~~i 99 (965)
|..||+.||||+++.+
T Consensus 84 -P~~LP~~L~p~s~~~~ 99 (104)
T PF12763_consen 84 -PSSLPPSLIPPSKRPL 99 (104)
T ss_dssp --SSSSGGGSSSCG---
T ss_pred -chhcCHHHCCCCcccc
Confidence 9999999999998865
No 4
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.4e-18 Score=197.23 Aligned_cols=92 Identities=41% Similarity=0.700 Sum_probs=87.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHh
Q 002108 427 HVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYR 506 (965)
Q Consensus 427 ~~~Wp~IS~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI~~~~ 506 (965)
..+| .||.+|+.+++..|..|- -..||||++++|+||++++||..+|.+||.|+|.|+||+|+..||.+||+||..++
T Consensus 5 ~n~W-avT~~Er~K~~~qF~~Lk-p~~gfitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkL 82 (1118)
T KOG1029|consen 5 TNPW-AVTDEERQKHDAQFGQLK-PGQGFITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKL 82 (1118)
T ss_pred CCcc-ccchHHHHHHHHHHhccC-CCCCccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHh
Confidence 4679 699999999999999996 56899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCC
Q 002108 507 EGRPLPTMLPSTIM 520 (965)
Q Consensus 507 ~G~~LP~~LPp~L~ 520 (965)
.|++||.+|||+|+
T Consensus 83 qG~~lP~~LPPsll 96 (1118)
T KOG1029|consen 83 QGIQLPPVLPPSLL 96 (1118)
T ss_pred cCCcCCCCCChHHh
Confidence 99999999999663
No 5
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=99.83 E-value=7.7e-21 Score=178.87 Aligned_cols=93 Identities=45% Similarity=0.878 Sum_probs=81.6
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHhcC--
Q 002108 431 PKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYREG-- 508 (965)
Q Consensus 431 p~IS~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI~~~~~G-- 508 (965)
|+|+++|+++|+.+|..+|. .+|+|++++++.+|++++|+.++|++||+++|.|+||+|+++|||+|||||.++++|
T Consensus 2 ~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~~~ 80 (104)
T PF12763_consen 2 PKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKLNGNG 80 (104)
T ss_dssp ---SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcCCC
Confidence 57999999999999999995 689999999999999999999999999999999999999999999999999997754
Q ss_pred CCCCCCCCCCCCCCcc
Q 002108 509 RPLPTMLPSTIMPDEA 524 (965)
Q Consensus 509 ~~LP~~LPp~L~pp~~ 524 (965)
.+||.+||+.|+|++.
T Consensus 81 ~~lP~~LP~~L~p~s~ 96 (104)
T PF12763_consen 81 KPLPSSLPPSLIPPSK 96 (104)
T ss_dssp S---SSSSGGGSSSCG
T ss_pred CCCchhcCHHHCCCCc
Confidence 5999999999999964
No 6
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.5e-16 Score=178.30 Aligned_cols=101 Identities=40% Similarity=0.733 Sum_probs=96.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 002108 421 STSSQSHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALY 500 (965)
Q Consensus 421 ~~~~~~~~~Wp~IS~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~ 500 (965)
.++..-..+| +|++++++.|.+.|+.+..|-.|||+|.-+++||.+++|+.++|.+||+|+|.|.||-|++.|||.|||
T Consensus 214 dnsS~~d~pw-~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 214 DNSSELDTPW-QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred ccccccCCcc-ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 3455668899 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCCCC
Q 002108 501 LMERYREGRPLPTMLPSTIMPD 522 (965)
Q Consensus 501 LI~~~~~G~~LP~~LPp~L~pp 522 (965)
||..+++|++||..||..|.|-
T Consensus 293 LVVaRkNgypLPe~LP~~L~P~ 314 (737)
T KOG1955|consen 293 LVVARKNGYPLPESLPHCLHPN 314 (737)
T ss_pred heeecccCCCCCCCCccccChh
Confidence 9999999999999999999886
No 7
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.64 E-value=1.1e-15 Score=140.42 Aligned_cols=94 Identities=36% Similarity=0.744 Sum_probs=91.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHhcC
Q 002108 429 PWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYREG 508 (965)
Q Consensus 429 ~Wp~IS~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI~~~~~G 508 (965)
+| .|+.+++.+|..+|..||+|++|+|+.++++.+|...+++.+++.+||.++|.+++|.|+|+||+.+|+++.+.+.|
T Consensus 1 ~~-~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g 79 (96)
T smart00027 1 DW-AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNG 79 (96)
T ss_pred CC-CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcC
Confidence 59 79999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCc
Q 002108 509 RPLPTMLPSTIMPDE 523 (965)
Q Consensus 509 ~~LP~~LPp~L~pp~ 523 (965)
.+||..||+.|+|+.
T Consensus 80 ~~~~~~~~~~~~~~~ 94 (96)
T smart00027 80 YPIPASLPPSLIPPS 94 (96)
T ss_pred CCCCccCCHhhcCCC
Confidence 999999999999984
No 8
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.35 E-value=3.4e-12 Score=117.40 Aligned_cols=90 Identities=29% Similarity=0.517 Sum_probs=84.2
Q ss_pred ccCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcCCCCChh
Q 002108 6 ATNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSKRELTPD 85 (965)
Q Consensus 6 ~~e~~~Y~~vF~~lD~D~DGkISg~Ea~~ff~~SgLp~~~LaqIW~LaD~d~DG~LdreEF~vAm~LV~lAQ~G~~lspe 85 (965)
..+...|..+|..+|.|++|+|+..+++.+|...+++...+.+||.++|.+++|+|+++||+.+|++|...+.|++| |-
T Consensus 6 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~-~~ 84 (96)
T smart00027 6 PEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPI-PA 84 (96)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCC-Cc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred hhhhhcCCCCC
Q 002108 86 IVKAALYGPAS 96 (965)
Q Consensus 86 ~Lp~~Lipps~ 96 (965)
.||.+|+|+..
T Consensus 85 ~~~~~~~~~~~ 95 (96)
T smart00027 85 SLPPSLIPPSK 95 (96)
T ss_pred cCCHhhcCCCc
Confidence 77888887764
No 9
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=8.3e-13 Score=145.95 Aligned_cols=91 Identities=27% Similarity=0.444 Sum_probs=87.2
Q ss_pred ccCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcCCCCChh
Q 002108 6 ATNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSKRELTPD 85 (965)
Q Consensus 6 ~~e~~~Y~~vF~~lD~D~DGkISg~Ea~~ff~~SgLp~~~LaqIW~LaD~d~DG~LdreEF~vAm~LV~lAQ~G~~lspe 85 (965)
+.++..|+++|..+-+ -||+|+|..++..+.+|.||+++|.+||+|+|.|+||+||-+||+.|-|||.+.+.|++| |.
T Consensus 440 ~~dk~~yde~fy~l~p-~~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~dg~ld~eefala~hli~~kleghel-p~ 517 (532)
T KOG1954|consen 440 SKDKPTYDEIFYTLSP-VNGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIKLKLEGHEL-PS 517 (532)
T ss_pred ecCCcchHhhhhcccc-cCceeccchhHHHHHhccCchhHHHhhhhhhcCCcccCcCHHHHHHHHHHHheecccccC-cc
Confidence 3678899999999987 899999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hhhhhcCCCCCCC
Q 002108 86 IVKAALYGPASAR 98 (965)
Q Consensus 86 ~Lp~~Lipps~~~ 98 (965)
.||.+||||+.|.
T Consensus 518 ~lp~hl~pps~r~ 530 (532)
T KOG1954|consen 518 ELPKHLVPPSKRG 530 (532)
T ss_pred ccCcccCCccccc
Confidence 9999999999874
No 10
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.8e-12 Score=146.16 Aligned_cols=87 Identities=31% Similarity=0.521 Sum_probs=83.2
Q ss_pred CccCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcCCCCCh
Q 002108 5 TATNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSKRELTP 84 (965)
Q Consensus 5 ~~~e~~~Y~~vF~~lD~D~DGkISg~Ea~~ff~~SgLp~~~LaqIW~LaD~d~DG~LdreEF~vAm~LV~lAQ~G~~lsp 84 (965)
+.++|.||..-|+.+.+|-.|.|+|..++.||.+|.||-..|..||.|+|.|+||.|+..|||.|||||-...+|++| |
T Consensus 226 T~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkNgypL-P 304 (737)
T KOG1955|consen 226 TPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKNGYPL-P 304 (737)
T ss_pred CHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhheeecccCCCC-C
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred hhhhhhcC
Q 002108 85 DIVKAALY 92 (965)
Q Consensus 85 e~Lp~~Li 92 (965)
+.||..|.
T Consensus 305 e~LP~~L~ 312 (737)
T KOG1955|consen 305 ESLPHCLH 312 (737)
T ss_pred CCCccccC
Confidence 99998753
No 11
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=3.6e-11 Score=133.27 Aligned_cols=110 Identities=29% Similarity=0.553 Sum_probs=96.0
Q ss_pred CCCCCCCccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhcCCC
Q 002108 407 PAAASTGFPIGALNSTSSQSHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDN 486 (965)
Q Consensus 407 ~~~~s~~~~~g~~~~~~~~~~~~Wp~IS~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks~Lp~eeL~~IW~LaD~D~ 486 (965)
..+...|..+| .+.....| .++ .++-.|+++|..+-. -+|+|+|..++.-|.+++||..+|..||.++|+|+
T Consensus 419 ~gpfg~geg~~-----eg~d~~ew-vv~-~dk~~yde~fy~l~p-~~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~ 490 (532)
T KOG1954|consen 419 EGPFGYGEGAG-----EGADEAEW-VVS-KDKPTYDEIFYTLSP-VNGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDK 490 (532)
T ss_pred cCCCCCCcccc-----cCCcccce-eee-cCCcchHhhhhcccc-cCceeccchhHHHHHhccCchhHHHhhhhhhcCCc
Confidence 33334455555 34668899 564 458899999999964 58999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcc
Q 002108 487 DGMLSLKEFCTALYLMERYREGRPLPTMLPSTIMPDEA 524 (965)
Q Consensus 487 DGkLs~dEFvvAM~LI~~~~~G~~LP~~LPp~L~pp~~ 524 (965)
||+|+-+||+.|-|||..++.|+.||..||+.|+||+.
T Consensus 491 dg~ld~eefala~hli~~kleghelp~~lp~hl~pps~ 528 (532)
T KOG1954|consen 491 DGMLDDEEFALANHLIKLKLEGHELPSELPKHLVPPSK 528 (532)
T ss_pred ccCcCHHHHHHHHHHHheecccccCccccCcccCCccc
Confidence 99999999999999999999999999999999999964
No 12
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.05 E-value=6.2e-10 Score=93.87 Aligned_cols=67 Identities=40% Similarity=0.683 Sum_probs=63.5
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHhc
Q 002108 441 YTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYRE 507 (965)
Q Consensus 441 y~~~F~~lDkD~dG~ISg~Elr~~f~ks~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI~~~~~ 507 (965)
|+++|+.+|.|++|+|+.+|++.+|...+++.+++.+||..+|.+++|.|+|+||+.+|++|.++++
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 67 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALALN 67 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999988999999999999999999999999999999999998763
No 13
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.03 E-value=8.4e-10 Score=93.07 Aligned_cols=67 Identities=46% Similarity=0.767 Sum_probs=64.6
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhc
Q 002108 12 FEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQS 78 (965)
Q Consensus 12 Y~~vF~~lD~D~DGkISg~Ea~~ff~~SgLp~~~LaqIW~LaD~d~DG~LdreEF~vAm~LV~lAQ~ 78 (965)
|+.+|..+|.|+||+|+.+|++.+|...|++...+.+||..+|.+++|+|+.+||+.+|++|.++|+
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 67 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALALN 67 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 6789999999999999999999999999999999999999999999999999999999999999874
No 14
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=1.2e-09 Score=134.31 Aligned_cols=99 Identities=30% Similarity=0.604 Sum_probs=92.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH
Q 002108 425 QSHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMER 504 (965)
Q Consensus 425 ~~~~~Wp~IS~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI~~ 504 (965)
.....| .|+..++.+|+.+|..+... .|+++++.++.+|+.++|+.+.|.+||+++|+|.+|.|++.||+++||||..
T Consensus 116 ~~~~~p-~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~ 193 (847)
T KOG0998|consen 116 AAPFVP-AITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLIND 193 (847)
T ss_pred CcccCC-CCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCCCChhhhccccccccccccCCCChhhhhhhhhHHHH
Confidence 335668 59999999999999999976 8999999999999999999999999999999999999999999999999999
Q ss_pred Hhc--CCCCCCCCCCCCCCCccc
Q 002108 505 YRE--GRPLPTMLPSTIMPDEAL 525 (965)
Q Consensus 505 ~~~--G~~LP~~LPp~L~pp~~~ 525 (965)
.++ -.+.|..||+.++++...
T Consensus 194 ~l~~~~~p~P~~~p~~lIpps~~ 216 (847)
T KOG0998|consen 194 LLNGNSEPVPSRLPPSLIPPSKS 216 (847)
T ss_pred HhhcccCCCCccCCcccCCcchh
Confidence 999 568899999999999754
No 15
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.82 E-value=9.5e-09 Score=87.38 Aligned_cols=60 Identities=27% Similarity=0.430 Sum_probs=52.9
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHcCCC--C----HHHHHHHHHHhcCCCCCccCHHHHHHHH
Q 002108 440 KYTKVFVQVDIDRDGKITGEQAYNLFLSWRL--P----REVLKQVWDLSDQDNDGMLSLKEFCTAL 499 (965)
Q Consensus 440 ry~~~F~~lDkD~dG~ISg~Elr~~f~ks~L--p----~eeL~~IW~LaD~D~DGkLs~dEFvvAM 499 (965)
+|+++|+.+|+|++|+|+.+|++.++...+. + .+.+..||..+|.|+||.|+|+||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 5889999999999999999999999987653 2 3566777999999999999999999776
No 16
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.67 E-value=4.5e-08 Score=83.24 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=53.9
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCCC------HHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 002108 11 LFEAYFRRADLDGDGQISGAEAVAFFQGSNLP------KQVLAQVWSHADQRKAGFLNRAEFFNAL 70 (965)
Q Consensus 11 ~Y~~vF~~lD~D~DGkISg~Ea~~ff~~SgLp------~~~LaqIW~LaD~d~DG~LdreEF~vAm 70 (965)
+++.+|+.+|.|+||+|+..|++.++...+.. ...+..||+.+|.|+||+|+++||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47899999999999999999999999998753 3567777999999999999999999886
No 17
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.66 E-value=8.3e-08 Score=88.62 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhCC-CCCCcccHHHHHHHHHc-CC--CCH-HHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH
Q 002108 436 SEVQKYTKVFVQVDI-DRDGKITGEQAYNLFLS-WR--LPR-EVLKQVWDLSDQDNDGMLSLKEFCTALYLMER 504 (965)
Q Consensus 436 eEk~ry~~~F~~lDk-D~dG~ISg~Elr~~f~k-s~--Lp~-eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI~~ 504 (965)
.-+..+..+|+.||+ +++|+|+.+|++.+|.+ .+ ++. +++..|+..+|.|+||+|+|+||+.+|.-+-.
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 346789999999999 99999999999999976 43 777 89999999999999999999999977664443
No 18
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.52 E-value=2.1e-07 Score=94.52 Aligned_cols=62 Identities=24% Similarity=0.360 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHH--cCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHH
Q 002108 438 VQKYTKVFVQVDIDRDGKITGEQAYNLFL--SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTAL 499 (965)
Q Consensus 438 k~ry~~~F~~lDkD~dG~ISg~Elr~~f~--ks~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM 499 (965)
.++|..+|+.||+|+||+|+..+++.++. +..++.+++..|+.++|.|+||.|+|++|+.++
T Consensus 91 ~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 91 EEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred HHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 57899999999999999999999999995 467999999999999999999999999999544
No 19
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.49 E-value=7.2e-07 Score=82.03 Aligned_cols=66 Identities=23% Similarity=0.331 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhC-CCCCC-cccHHHHHHHHHc-----CC--CCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Q 002108 437 EVQKYTKVFVQVD-IDRDG-KITGEQAYNLFLS-----WR--LPREVLKQVWDLSDQDNDGMLSLKEFCTALYLM 502 (965)
Q Consensus 437 Ek~ry~~~F~~lD-kD~dG-~ISg~Elr~~f~k-----s~--Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI 502 (965)
-+..+.++|+.|| +|++| +|+.++++.+|.. .+ .+++++..++..+|.|+||+|+|+||+.+|.-+
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4678999999998 79999 5999999999986 43 678889999999999999999999998665543
No 20
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.48 E-value=8.6e-06 Score=89.40 Aligned_cols=122 Identities=22% Similarity=0.298 Sum_probs=106.1
Q ss_pred HHHHHhHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 002108 599 ESLNAKLKEATE-ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQ 677 (965)
Q Consensus 599 ~~Lns~~qeaeE-a~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQ 677 (965)
..|...+.+|+. +.+.+.+++ .||+.|++++.....+....+..+++++..+++.++.|+.+++.-..+
T Consensus 169 ~~L~eiR~~ye~~~~~~~~e~e----------~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~ 238 (312)
T PF00038_consen 169 AALREIRAQYEEIAQKNREELE----------EWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAK 238 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhhhhhh----------hhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccc
Confidence 445555666665 445555555 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH--HHHHHH
Q 002108 678 SGDVASKLTLEEAT----FRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV--KILNDR 739 (965)
Q Consensus 678 v~eLEsqLa~~Ea~----LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~--K~l~E~ 739 (965)
...|+.+|..+|.. +++.+..+..|+..|.+ |+.+|.++..+|++|+ |+.+|.
T Consensus 239 ~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~---------l~~~~~~~~~ey~~Ll~~K~~Ld~ 297 (312)
T PF00038_consen 239 NASLERQLRELEQRLDEEREEYQAEIAELEEELAE---------LREEMARQLREYQELLDVKLALDA 297 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHH---------HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999855 67789999999999999 9999999999999999 666653
No 21
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.47 E-value=8.6e-07 Score=80.05 Aligned_cols=68 Identities=15% Similarity=0.259 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhhCC--CCCCcccHHHHHHHHHc-CC--C----CHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Q 002108 435 HSEVQKYTKVFVQVDI--DRDGKITGEQAYNLFLS-WR--L----PREVLKQVWDLSDQDNDGMLSLKEFCTALYLM 502 (965)
Q Consensus 435 ~eEk~ry~~~F~~lDk--D~dG~ISg~Elr~~f~k-s~--L----p~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI 502 (965)
+++++.+..+|..||+ |++|+|+.++++.+|.. .+ + ..+++..||..+|.+++|.|+|+||+.+|.-+
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 5678899999999999 89999999999999954 22 3 48899999999999999999999999766544
No 22
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.46 E-value=3.8e-07 Score=90.40 Aligned_cols=63 Identities=25% Similarity=0.368 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHc--CCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 002108 438 VQKYTKVFVQVDIDRDGKITGEQAYNLFLS--WRLPREVLKQVWDLSDQDNDGMLSLKEFCTALY 500 (965)
Q Consensus 438 k~ry~~~F~~lDkD~dG~ISg~Elr~~f~k--s~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~ 500 (965)
...++++|+.||+|++|+||..||+.+|.. ..++.+++..++..+|.|+||.|+|+||+..|.
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 568999999999999999999999999965 568899999999999999999999999997664
No 23
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.45 E-value=8e-07 Score=82.16 Aligned_cols=67 Identities=12% Similarity=0.244 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhhC-CCCCC-cccHHHHHHHHHc-------CCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Q 002108 436 SEVQKYTKVFVQVD-IDRDG-KITGEQAYNLFLS-------WRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLM 502 (965)
Q Consensus 436 eEk~ry~~~F~~lD-kD~dG-~ISg~Elr~~f~k-------s~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI 502 (965)
.-+..+.++|..|| +|++| +|+..||+.+|.+ ......+|.+|+..+|.|+||.|+|+||+.+|.-+
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 34678889999999 78998 5999999999954 13467899999999999999999999999776533
No 24
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.44 E-value=1.1e-06 Score=80.55 Aligned_cols=68 Identities=13% Similarity=0.279 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhhC-CCCCCc-ccHHHHHHHHHc-C------CCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH
Q 002108 437 EVQKYTKVFVQVD-IDRDGK-ITGEQAYNLFLS-W------RLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMER 504 (965)
Q Consensus 437 Ek~ry~~~F~~lD-kD~dG~-ISg~Elr~~f~k-s------~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI~~ 504 (965)
-...++++|+.|| +|++|+ |+..|++.+|.. . ..+.+++..|+..+|.|++|.|+|+||+.+|.-+-.
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~ 83 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTV 83 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHH
Confidence 3578999999997 999995 999999999964 2 347889999999999999999999999977765443
No 25
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.44 E-value=1.1e-06 Score=80.93 Aligned_cols=67 Identities=13% Similarity=0.201 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhCC-CC-CCcccHHHHHHHHHc-------CCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH
Q 002108 437 EVQKYTKVFVQVDI-DR-DGKITGEQAYNLFLS-------WRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLME 503 (965)
Q Consensus 437 Ek~ry~~~F~~lDk-D~-dG~ISg~Elr~~f~k-------s~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI~ 503 (965)
-...+..+|..||. |+ +|+|+.+|++.+|.. ..++.+++..|+..+|.+++|.|+|+||+.+|.-+.
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 46789999999997 97 699999999999864 356889999999999999999999999997765443
No 26
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.43 E-value=1.2e-06 Score=80.56 Aligned_cols=67 Identities=12% Similarity=0.223 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhhCC-CC-CCcccHHHHHHHHH-----cCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Q 002108 436 SEVQKYTKVFVQVDI-DR-DGKITGEQAYNLFL-----SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLM 502 (965)
Q Consensus 436 eEk~ry~~~F~~lDk-D~-dG~ISg~Elr~~f~-----ks~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI 502 (965)
.-+..+..+|.++|. |+ +|+|+.+|++.+|. +..++.+++.+|+..+|.|++|+|+|+||+..|.-+
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 345678899999997 67 89999999999995 456899999999999999999999999998665533
No 27
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.42 E-value=8.4e-07 Score=87.94 Aligned_cols=73 Identities=23% Similarity=0.345 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcC--CCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHH
Q 002108 433 MTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSW--RLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (965)
Q Consensus 433 IS~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks--~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI~~~ 505 (965)
++.++...|.++|..||+|++|+|+..++..+|... ..+.++|..|+..+|.+++|.|+++||+.+|......
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~ 76 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEE 76 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcc
Confidence 677889999999999999999999999999999765 5679999999999999999999999999766655443
No 28
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.36 E-value=1.3e-06 Score=80.86 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhCC-CCCCcccHHHHHHHHHh-cC--CCH-HHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcC
Q 002108 9 SDLFEAYFRRADL-DGDGQISGAEAVAFFQG-SN--LPK-QVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSK 79 (965)
Q Consensus 9 ~~~Y~~vF~~lD~-D~DGkISg~Ea~~ff~~-Sg--Lp~-~~LaqIW~LaD~d~DG~LdreEF~vAm~LV~lAQ~G 79 (965)
...+..+|..+|. +++|+|+..|++.+|.. -| |.. ..+..++..+|.|+||.|+++||+..|.-++.+..+
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~~~ 82 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKAVKG 82 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 3468899999999 99999999999999988 44 777 899999999999999999999999999999988766
No 29
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.36 E-value=2.1e-06 Score=79.22 Aligned_cols=67 Identities=18% Similarity=0.271 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHh-hCCCCCC-cccHHHHHHHHHcC-------CCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Q 002108 436 SEVQKYTKVFVQ-VDIDRDG-KITGEQAYNLFLSW-------RLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLM 502 (965)
Q Consensus 436 eEk~ry~~~F~~-lDkD~dG-~ISg~Elr~~f~ks-------~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI 502 (965)
.-+..+..+|+. +|+|++| +|+.+|++.+|... .....++.+||..+|.|+||+|+|+||+..|.-+
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 457789999999 7898986 99999999999653 4667899999999999999999999999666544
No 30
>PTZ00183 centrin; Provisional
Probab=98.32 E-value=2.6e-06 Score=82.62 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcC--CCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Q 002108 432 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSW--RLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLM 502 (965)
Q Consensus 432 ~IS~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks--~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI 502 (965)
.+++.+++++..+|..+|.+++|+|+..+++.+|... .+...++..+|..+|.+++|.|+|+||+.+++.+
T Consensus 10 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 82 (158)
T PTZ00183 10 GLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKK 82 (158)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHH
Confidence 5889999999999999999999999999999999754 4678899999999999999999999999877643
No 31
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.29 E-value=1.3e-06 Score=90.85 Aligned_cols=68 Identities=28% Similarity=0.380 Sum_probs=62.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHH--HHHHHHHhcCCCCCccCHHHHH
Q 002108 427 HVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREV--LKQVWDLSDQDNDGMLSLKEFC 496 (965)
Q Consensus 427 ~~~Wp~IS~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks~Lp~ee--L~~IW~LaD~D~DGkLs~dEFv 496 (965)
..+| ++..+++.|..+|+.+|.|.||||+..||+.+|.+.+.|+.. |++|+..+|-|.||+|+|.||+
T Consensus 89 eF~e--FsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfrefl 158 (244)
T KOG0041|consen 89 EFSE--FSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFL 158 (244)
T ss_pred hhhH--HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHH
Confidence 4446 889999999999999999999999999999999999988764 5899999999999999999997
No 32
>PTZ00184 calmodulin; Provisional
Probab=98.27 E-value=3.8e-06 Score=80.24 Aligned_cols=71 Identities=23% Similarity=0.374 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcC--CCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Q 002108 432 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSW--RLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLM 502 (965)
Q Consensus 432 ~IS~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks--~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI 502 (965)
.++.++++++..+|..+|.+++|+|+..+++.++... .+..+.+..||..+|.+++|.|+|+||+.+|+..
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 4778899999999999999999999999999999654 4668899999999999999999999999777653
No 33
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.26 E-value=4.1e-06 Score=76.67 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=63.2
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHh-c------CCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcC
Q 002108 9 SDLFEAYFRRAD-LDGDG-QISGAEAVAFFQG-S------NLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSK 79 (965)
Q Consensus 9 ~~~Y~~vF~~lD-~D~DG-kISg~Ea~~ff~~-S------gLp~~~LaqIW~LaD~d~DG~LdreEF~vAm~LV~lAQ~G 79 (965)
...+.++|..+| .|++| +|+..|++.+|+. . ..+...+.+|+..+|.|++|.|+++||+..|..++.|+.+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~~~~ 87 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVACNN 87 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 356889999997 99999 5999999999975 3 2478889999999999999999999999999999998865
No 34
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.21 E-value=6.4e-06 Score=75.83 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHh-----cC--CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcC
Q 002108 9 SDLFEAYFRRAD-LDGDG-QISGAEAVAFFQG-----SN--LPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSK 79 (965)
Q Consensus 9 ~~~Y~~vF~~lD-~D~DG-kISg~Ea~~ff~~-----Sg--Lp~~~LaqIW~LaD~d~DG~LdreEF~vAm~LV~lAQ~G 79 (965)
...+.++|+.+| .|+|| +|+..|++.+|+. .| ..+..+..+++.+|.|+||.|+++||+..+.-++.+..+
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~~~~~ 86 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTTACHE 86 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHhh
Confidence 346889999998 89999 5999999999998 55 577889999999999999999999999999888887654
No 35
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.18 E-value=5.7e-06 Score=80.10 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHH
Q 002108 434 THSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTAL 499 (965)
Q Consensus 434 S~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM 499 (965)
.+..+..+.-+|..+|+|+||+|+.+||..++ ....+..+..++..+|.|+||.|+++||+..+
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 45678889999999999999999999999987 44456778999999999999999999999665
No 36
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.14 E-value=7.5e-06 Score=65.52 Aligned_cols=59 Identities=25% Similarity=0.418 Sum_probs=53.2
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHcC--CCCHHHHHHHHHHhcCCCCCccCHHHHHHHH
Q 002108 441 YTKVFVQVDIDRDGKITGEQAYNLFLSW--RLPREVLKQVWDLSDQDNDGMLSLKEFCTAL 499 (965)
Q Consensus 441 y~~~F~~lDkD~dG~ISg~Elr~~f~ks--~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM 499 (965)
+..+|+.+|.+++|.|+..+++.++... ..+.+.+..+|..+|.+++|.|+++||+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5778999999999999999999999754 5778999999999999999999999998543
No 37
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.13 E-value=1.2e-05 Score=74.14 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhCC-CC-CCcccHHHHHHHHHh-------cCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhc
Q 002108 9 SDLFEAYFRRADL-DG-DGQISGAEAVAFFQG-------SNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQS 78 (965)
Q Consensus 9 ~~~Y~~vF~~lD~-D~-DGkISg~Ea~~ff~~-------SgLp~~~LaqIW~LaD~d~DG~LdreEF~vAm~LV~lAQ~ 78 (965)
...+..+|..+|. |+ ||+|+..|++.+|.. ..++...+..|++.+|.++||.|+++||+.+|.-+.++..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~~~ 85 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIACE 85 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 3568889999997 97 699999999999975 2468889999999999999999999999999988877753
No 38
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.11 E-value=1e-05 Score=74.55 Aligned_cols=77 Identities=22% Similarity=0.268 Sum_probs=62.8
Q ss_pred CCCcCccCHHHHHHHHHhhCC-CC-CCcccHHHHHHHHHh-----cCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHH
Q 002108 1 MAGQTATNSDLFEAYFRRADL-DG-DGQISGAEAVAFFQG-----SNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLV 73 (965)
Q Consensus 1 Ma~q~~~e~~~Y~~vF~~lD~-D~-DGkISg~Ea~~ff~~-----SgLp~~~LaqIW~LaD~d~DG~LdreEF~vAm~LV 73 (965)
|+..........-++|..+|. |+ +|+|+.+|++.+|.+ -.+++..+.+||+-+|.|+||.|+++||+..|.-+
T Consensus 1 ~~~~~e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 1 MASPLDQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred CCcHHHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 344422334456689999998 67 899999999999963 34789999999999999999999999999888877
Q ss_pred HHHh
Q 002108 74 TVAQ 77 (965)
Q Consensus 74 ~lAQ 77 (965)
+.|.
T Consensus 81 ~~~~ 84 (88)
T cd05029 81 ALIY 84 (88)
T ss_pred HHHH
Confidence 7764
No 39
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.11 E-value=1.4e-05 Score=73.96 Aligned_cols=70 Identities=21% Similarity=0.269 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHh------c-CCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhc
Q 002108 9 SDLFEAYFRRAD-LDGDG-QISGAEAVAFFQG------S-NLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQS 78 (965)
Q Consensus 9 ~~~Y~~vF~~lD-~D~DG-kISg~Ea~~ff~~------S-gLp~~~LaqIW~LaD~d~DG~LdreEF~vAm~LV~lAQ~ 78 (965)
...+.++|..+| .|+|| +|+..|++.+|.. . ...+..+.+|.+-+|.|+||.|+++||+..|.-++.|..
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~~~ 87 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVACN 87 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 446778899999 78998 5999999999965 2 347788999999999999999999999999988887754
No 40
>PTZ00184 calmodulin; Provisional
Probab=98.10 E-value=1.1e-05 Score=77.05 Aligned_cols=73 Identities=25% Similarity=0.318 Sum_probs=63.5
Q ss_pred CCCc-CccCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHH
Q 002108 1 MAGQ-TATNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSN--LPKQVLAQVWSHADQRKAGFLNRAEFFNALKLV 73 (965)
Q Consensus 1 Ma~q-~~~e~~~Y~~vF~~lD~D~DGkISg~Ea~~ff~~Sg--Lp~~~LaqIW~LaD~d~DG~LdreEF~vAm~LV 73 (965)
||.+ +..+...+..+|..+|.|++|.|+..|+..++...+ +....+..||+++|.+++|.|+++||+.+|...
T Consensus 1 ~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 5666 446677899999999999999999999999998765 566789999999999999999999999888754
No 41
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.09 E-value=1e-05 Score=82.32 Aligned_cols=72 Identities=17% Similarity=0.340 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH--cCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH
Q 002108 432 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFL--SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMER 504 (965)
Q Consensus 432 ~IS~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~--ks~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI~~ 504 (965)
.++.+++++++++|..||+|.+|+|+..+|..+|+ +.+.+..++.+|+...|. +.+.|+|.||+.+|-...+
T Consensus 13 ~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~ 86 (160)
T COG5126 13 QLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLK 86 (160)
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999985 567899999999999999 8999999999977765543
No 42
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.06 E-value=1.8e-05 Score=73.05 Aligned_cols=70 Identities=29% Similarity=0.384 Sum_probs=61.7
Q ss_pred HHHHHHHHHh-hCCCCCC-cccHHHHHHHHHhc-------CCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhc
Q 002108 9 SDLFEAYFRR-ADLDGDG-QISGAEAVAFFQGS-------NLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQS 78 (965)
Q Consensus 9 ~~~Y~~vF~~-lD~D~DG-kISg~Ea~~ff~~S-------gLp~~~LaqIW~LaD~d~DG~LdreEF~vAm~LV~lAQ~ 78 (965)
......+|.. .|.|++| +|+..|++.+|..- ...+..+.+||..+|.|+||.|+++||+..|.-++.+..
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~~~~ 86 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAVACH 86 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 4467788999 8888987 99999999999875 577899999999999999999999999999888887754
No 43
>PTZ00183 centrin; Provisional
Probab=98.03 E-value=1.5e-05 Score=77.33 Aligned_cols=61 Identities=26% Similarity=0.385 Sum_probs=55.2
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHcC--CCCHHHHHHHHHHhcCCCCCccCHHHHHHHH
Q 002108 439 QKYTKVFVQVDIDRDGKITGEQAYNLFLSW--RLPREVLKQVWDLSDQDNDGMLSLKEFCTAL 499 (965)
Q Consensus 439 ~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks--~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM 499 (965)
..++.+|+.+|.+++|+|+.++++.+|... .++.+++..|+..+|.+++|.|+|+||+.+|
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIM 152 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 468899999999999999999999999754 5889999999999999999999999998655
No 44
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.98 E-value=3.3e-05 Score=69.79 Aligned_cols=69 Identities=14% Similarity=0.199 Sum_probs=59.1
Q ss_pred cCHHHHHHHHHhhCC--CCCCcccHHHHHHHHHh-cC--C----CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHH
Q 002108 7 TNSDLFEAYFRRADL--DGDGQISGAEAVAFFQG-SN--L----PKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTV 75 (965)
Q Consensus 7 ~e~~~Y~~vF~~lD~--D~DGkISg~Ea~~ff~~-Sg--L----p~~~LaqIW~LaD~d~DG~LdreEF~vAm~LV~l 75 (965)
.+...+..+|..+|. |++|+|+..|++.+|.. .| + ....+.+||..+|.+++|.|+++||+..|.-+..
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 345678899999999 89999999999999975 33 2 3788999999999999999999999987765543
No 45
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.96 E-value=1.5e-05 Score=65.70 Aligned_cols=49 Identities=31% Similarity=0.501 Sum_probs=44.2
Q ss_pred CCCcccHHHHHHHHHc--CC-CCHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 002108 452 RDGKITGEQAYNLFLS--WR-LPREVLKQVWDLSDQDNDGMLSLKEFCTALY 500 (965)
Q Consensus 452 ~dG~ISg~Elr~~f~k--s~-Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~ 500 (965)
++|+|+.++++.+|.. .. ++.+++..|+..+|.|++|.|+|+||+.+|.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 4799999999999964 46 8899999999999999999999999997764
No 46
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.95 E-value=2.7e-05 Score=75.50 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 002108 9 SDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNAL 70 (965)
Q Consensus 9 ~~~Y~~vF~~lD~D~DGkISg~Ea~~ff~~SgLp~~~LaqIW~LaD~d~DG~LdreEF~vAm 70 (965)
+....-.|..+|.|+||+|+..|+..++ ......-+.+++..+|.|+||+|+++||+..+
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3446678999999999999999999987 45556778999999999999999999999988
No 47
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.90 E-value=5.1e-05 Score=69.58 Aligned_cols=67 Identities=18% Similarity=0.308 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhCCC--CCCcccHHHHHHHHHc---CCCC----HHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Q 002108 436 SEVQKYTKVFVQVDID--RDGKITGEQAYNLFLS---WRLP----REVLKQVWDLSDQDNDGMLSLKEFCTALYLM 502 (965)
Q Consensus 436 eEk~ry~~~F~~lDkD--~dG~ISg~Elr~~f~k---s~Lp----~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI 502 (965)
.-+..+..+|..++.. ++|+|+.+|++.+|.. ..++ .+++..||..+|.+++|.|+|+||+.+|.-+
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3467888999999865 5899999999999963 2355 8999999999999999999999999766644
No 48
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.85 E-value=6.3e-05 Score=60.13 Aligned_cols=59 Identities=27% Similarity=0.433 Sum_probs=53.4
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhc--CCCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 002108 12 FEAYFRRADLDGDGQISGAEAVAFFQGS--NLPKQVLAQVWSHADQRKAGFLNRAEFFNAL 70 (965)
Q Consensus 12 Y~~vF~~lD~D~DGkISg~Ea~~ff~~S--gLp~~~LaqIW~LaD~d~DG~LdreEF~vAm 70 (965)
...+|..+|.|++|.|+..++..++... ..+...+..||..+|.+++|.|+.+||+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999977 4777889999999999999999999998754
No 49
>PRK11637 AmiB activator; Provisional
Probab=97.85 E-value=0.0014 Score=75.75 Aligned_cols=14 Identities=14% Similarity=0.449 Sum_probs=9.0
Q ss_pred CCCCCCCccccccC
Q 002108 936 FDTHYDAESVWGFD 949 (965)
Q Consensus 936 fd~~~d~~svwg~~ 949 (965)
-||++-+-+|||-+
T Consensus 365 i~hg~g~~t~Y~~~ 378 (428)
T PRK11637 365 VEHGKGDMSLYGYN 378 (428)
T ss_pred EEeCCCcEEEccCC
Confidence 46666667777654
No 50
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.80 E-value=4.4e-05 Score=62.90 Aligned_cols=49 Identities=18% Similarity=0.376 Sum_probs=44.8
Q ss_pred CCCcccHHHHHHHHHhc--C-CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Q 002108 23 GDGQISGAEAVAFFQGS--N-LPKQVLAQVWSHADQRKAGFLNRAEFFNALK 71 (965)
Q Consensus 23 ~DGkISg~Ea~~ff~~S--g-Lp~~~LaqIW~LaD~d~DG~LdreEF~vAm~ 71 (965)
.+|+|+.++++.+|... . ++...+..|+..+|.|+||+|+++||+.+|.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 37999999999999754 4 8899999999999999999999999999885
No 51
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=5.5e-05 Score=76.80 Aligned_cols=63 Identities=25% Similarity=0.337 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHH--cCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 002108 438 VQKYTKVFVQVDIDRDGKITGEQAYNLFL--SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALY 500 (965)
Q Consensus 438 k~ry~~~F~~lDkD~dG~ISg~Elr~~f~--ks~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~ 500 (965)
+..+..+|+.+|.|++|+|+..+++.+.. +.+|+.++|..+++++|.|+||.|+.+||...|.
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 56788999999999999999999999995 5679999999999999999999999999986664
No 52
>PF14658 EF-hand_9: EF-hand domain
Probab=97.78 E-value=5.3e-05 Score=66.86 Aligned_cols=59 Identities=12% Similarity=0.211 Sum_probs=53.1
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHc--C-CCCHHHHHHHHHHhcCCCC-CccCHHHHHHHHHH
Q 002108 443 KVFVQVDIDRDGKITGEQAYNLFLS--W-RLPREVLKQVWDLSDQDND-GMLSLKEFCTALYL 501 (965)
Q Consensus 443 ~~F~~lDkD~dG~ISg~Elr~~f~k--s-~Lp~eeL~~IW~LaD~D~D-GkLs~dEFvvAM~L 501 (965)
.+|..||.++.|.|...+++.+|+. . ...+.+|..+..+.|.++. |.|+|+.|+.+|..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999964 3 5668899999999999988 99999999988864
No 53
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.78 E-value=6.9e-05 Score=78.18 Aligned_cols=63 Identities=27% Similarity=0.436 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHH---cCCCC--HHH----HHHHHHHhcCCCCCccCHHHHHHHHH
Q 002108 438 VQKYTKVFVQVDIDRDGKITGEQAYNLFL---SWRLP--REV----LKQVWDLSDQDNDGMLSLKEFCTALY 500 (965)
Q Consensus 438 k~ry~~~F~~lDkD~dG~ISg~Elr~~f~---ks~Lp--~ee----L~~IW~LaD~D~DGkLs~dEFvvAM~ 500 (965)
+++++-+|+.+|.+++|+|+.+|+..++. +.+.. .+. +..++.++|.|+||+|+|+||+.++.
T Consensus 103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 36888899999999999999999999885 34455 444 45567899999999999999997765
No 54
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.73 E-value=6.9e-05 Score=78.42 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=62.2
Q ss_pred CHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCHHH--HHHHHHHhCCCCCCCcCHHHHHHHHHHHHH
Q 002108 8 NSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQV--LAQVWSHADQRKAGFLNRAEFFNALKLVTV 75 (965)
Q Consensus 8 e~~~Y~~vF~~lD~D~DGkISg~Ea~~ff~~SgLp~~~--LaqIW~LaD~d~DG~LdreEF~vAm~LV~l 75 (965)
+...|..+|..+|.|.||+|+..|++.|+.+-|.|+.- |.++...+|-|.||+|++.||+...++++-
T Consensus 97 qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 46688999999999999999999999999999999987 678999999999999999999988877653
No 55
>PRK09039 hypothetical protein; Validated
Probab=97.71 E-value=0.0022 Score=72.74 Aligned_cols=71 Identities=17% Similarity=0.105 Sum_probs=57.6
Q ss_pred HHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 638 ELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 638 ELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
+++.....++++|.+.+.+.++..++|+.|+.+|+.-.+|+..|+..|..+|.+.++++.|+.+|+..|.+
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777778888888888888888888888888888888888888888888888888888877777777
No 56
>PRK11637 AmiB activator; Provisional
Probab=97.64 E-value=0.0047 Score=71.53 Aligned_cols=50 Identities=14% Similarity=0.198 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHH
Q 002108 615 VEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREV 664 (965)
Q Consensus 615 l~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRev 664 (965)
+.+++.+|.++.+++..++.++.+++.+....+.++..+..+|..++.++
T Consensus 70 ~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 70 RASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.54 E-value=0.0017 Score=79.65 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=13.8
Q ss_pred chHHHHHHHHHHHHHHHH---HHHHHHHHhh
Q 002108 716 GTLQQHADHIQNELEELV---KILNDRCKQY 743 (965)
Q Consensus 716 ~~LKeri~~iNsel~eL~---K~l~E~~qq~ 743 (965)
+.+|+|++++..|+.+|. |.+.|++..+
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~ 571 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIREL 571 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554 4444444433
No 58
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.53 E-value=0.0092 Score=64.72 Aligned_cols=52 Identities=21% Similarity=0.292 Sum_probs=23.4
Q ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002108 599 ESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRL 650 (965)
Q Consensus 599 ~~Lns~~qeaeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL 650 (965)
+.|.....+.+++.+.+.+++.++.++.+++..++..++++..+..+.+..|
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343333344444444444444444444444444444444444444444333
No 59
>PRK09039 hypothetical protein; Validated
Probab=97.50 E-value=0.0038 Score=70.82 Aligned_cols=73 Identities=7% Similarity=-0.020 Sum_probs=48.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 002108 651 NEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE 730 (965)
Q Consensus 651 ~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~ 730 (965)
.+...++..+.+++..++.+|.+...+|.-|+.+|+.++.++..|+..+..++++... .+++|+.+..+|+
T Consensus 112 ~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~---------~~~~i~~L~~~L~ 182 (343)
T PRK09039 112 AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRE---------SQAKIADLGRRLN 182 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence 3455666667777777888888887777777777777776666666666666665555 5555555555555
Q ss_pred HH
Q 002108 731 EL 732 (965)
Q Consensus 731 eL 732 (965)
.+
T Consensus 183 ~a 184 (343)
T PRK09039 183 VA 184 (343)
T ss_pred HH
Confidence 33
No 60
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.46 E-value=0.0073 Score=65.48 Aligned_cols=137 Identities=19% Similarity=0.270 Sum_probs=76.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002108 606 KEATEADKKVEELEKEILTSREKIQFCSTKMQELILY--KSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVAS 683 (965)
Q Consensus 606 qeaeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~--ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEs 683 (965)
.++++.++++...+.+|++.++|++..+.++...... ......++...++++.++++++..|..+++.-.+++..|..
T Consensus 52 ~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~ 131 (239)
T COG1579 52 IELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKE 131 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566688888888888888888888888777443222 22233444444555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH-HHHHHHHHHHHhh-Cccc
Q 002108 684 KLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE-ELVKILNDRCKQY-GLRA 747 (965)
Q Consensus 684 qLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~-eL~K~l~E~~qq~-Gl~~ 747 (965)
++..+|..+.+++.. ++.++..+.. +-..+..+.+++-.+++ +|.+....-|+.+ |+.+
T Consensus 132 ~~~~~e~~~~e~~~~---~e~e~~~i~e--~~~~~~~~~~~L~~~l~~ell~~yeri~~~~kg~gv 192 (239)
T COG1579 132 RLERLEKNLAEAEAR---LEEEVAEIRE--EGQELSSKREELKEKLDPELLSEYERIRKNKKGVGV 192 (239)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCceE
Confidence 555555555544444 2223333110 00115555555555555 5556666667666 6655
No 61
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.45 E-value=0.0074 Score=76.25 Aligned_cols=13 Identities=0% Similarity=0.174 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 002108 721 HADHIQNELEELV 733 (965)
Q Consensus 721 ri~~iNsel~eL~ 733 (965)
++..+..++.+|.
T Consensus 825 ~~~~l~~~~~~l~ 837 (1179)
T TIGR02168 825 RLESLERRIAATE 837 (1179)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444443
No 62
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=97.44 E-value=0.00034 Score=71.22 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcC--CCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 002108 432 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSW--RLPREVLKQVWDLSDQDNDGMLSLKEFCTALY 500 (965)
Q Consensus 432 ~IS~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks--~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~ 500 (965)
.++++++++++..|..||.+++|+|.++||+-.++.. ....+++.+|+..+|.++.|.|+|++|...|.
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt 96 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMT 96 (172)
T ss_pred cccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHH
Confidence 5889999999999999999999999999998888654 56689999999999999999999999995444
No 63
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.43 E-value=0.00038 Score=72.77 Aligned_cols=65 Identities=26% Similarity=0.372 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHh---cCCC--HH----HHHHHHHHhCCCCCCCcCHHHHHHHHHHH
Q 002108 9 SDLFEAYFRRADLDGDGQISGAEAVAFFQG---SNLP--KQ----VLAQVWSHADQRKAGFLNRAEFFNALKLV 73 (965)
Q Consensus 9 ~~~Y~~vF~~lD~D~DGkISg~Ea~~ff~~---SgLp--~~----~LaqIW~LaD~d~DG~LdreEF~vAm~LV 73 (965)
+.+.+-.|+.+|.|+||+|+..|+..++.. .+.. .+ .+.+++..+|.|+||+|+++||+.++.-.
T Consensus 103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 346777899999999999999999888864 3555 43 45567788999999999999999988754
No 64
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.42 E-value=0.0082 Score=75.88 Aligned_cols=7 Identities=14% Similarity=0.738 Sum_probs=2.9
Q ss_pred ccccccC
Q 002108 943 ESVWGFD 949 (965)
Q Consensus 943 ~svwg~~ 949 (965)
|.|+|+.
T Consensus 1159 d~~~~~~ 1165 (1179)
T TIGR02168 1159 DQLYGVT 1165 (1179)
T ss_pred hhHeeee
Confidence 3444443
No 65
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.40 E-value=0.009 Score=67.15 Aligned_cols=84 Identities=18% Similarity=0.252 Sum_probs=42.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH----HHHHHH
Q 002108 657 VSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQ----NELEEL 732 (965)
Q Consensus 657 isalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iN----sel~eL 732 (965)
+.++|.++..+..+++...+.+.+|+.++...+..+..+.+++.++.++|.+ ++...+... .|+..|
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e---------~~~~~~~~r~~t~~Ev~~L 281 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE---------AEKIREECRGWTRSEVKRL 281 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhcCCCHHHHHHH
Confidence 3334444444444444444444455555555555555555555555555555 332222221 555666
Q ss_pred HHHHHHHHHhhCccccc
Q 002108 733 VKILNDRCKQYGLRAKP 749 (965)
Q Consensus 733 ~K~l~E~~qq~Gl~~K~ 749 (965)
+..+.--++..|+....
T Consensus 282 k~~~~~Le~~~gw~~~~ 298 (325)
T PF08317_consen 282 KAKVDALEKLTGWKIVS 298 (325)
T ss_pred HHHHHHHHHHHCcEEEE
Confidence 66666667777877633
No 66
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.40 E-value=0.01 Score=73.03 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=37.1
Q ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 002108 599 ESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEIT 654 (965)
Q Consensus 599 ~~Lns~~qeaeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~ 654 (965)
..|.+++++.++++.|+.++.+..+.-++-+..+++|+.+.+..+..++.+|.+-+
T Consensus 460 ~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 460 SELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666677777777666666666666777777777777777776666653
No 67
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.38 E-value=0.01 Score=75.42 Aligned_cols=7 Identities=14% Similarity=0.359 Sum_probs=2.8
Q ss_pred ccccccC
Q 002108 943 ESVWGFD 949 (965)
Q Consensus 943 ~svwg~~ 949 (965)
|.|||+.
T Consensus 1144 d~~~~~~ 1150 (1164)
T TIGR02169 1144 DRAIGVT 1150 (1164)
T ss_pred ceeEeEE
Confidence 3444443
No 68
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.35 E-value=0.00055 Score=69.42 Aligned_cols=61 Identities=20% Similarity=0.303 Sum_probs=56.2
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHH--cCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHH
Q 002108 439 QKYTKVFVQVDIDRDGKITGEQAYNLFL--SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTAL 499 (965)
Q Consensus 439 ~ry~~~F~~lDkD~dG~ISg~Elr~~f~--ks~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM 499 (965)
+-+..+|+.||.+++|+|..+.++++|. +-+++.+++..||+.+-+|..|.|+|.+||.+|
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~i 163 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYII 163 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHH
Confidence 5688999999999999999999999995 457999999999999999999999999999554
No 69
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.35 E-value=0.00068 Score=62.24 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=56.2
Q ss_pred HHHHHHHhhCCC--CCCcccHHHHHHHHHhcC---CC----HHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHh
Q 002108 11 LFEAYFRRADLD--GDGQISGAEAVAFFQGSN---LP----KQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQ 77 (965)
Q Consensus 11 ~Y~~vF~~lD~D--~DGkISg~Ea~~ff~~Sg---Lp----~~~LaqIW~LaD~d~DG~LdreEF~vAm~LV~lAQ 77 (965)
....+|..++.+ .+|+|+.+|++.+|.+.. ++ +..+..||..+|.|+||.|+++||+..|.-+..+.
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~~~ 84 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVAA 84 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHHh
Confidence 455778888865 478999999999997432 44 88999999999999999999999999998877654
No 70
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.33 E-value=0.018 Score=64.76 Aligned_cols=127 Identities=18% Similarity=0.209 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002108 608 ATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDN----RLNEITERVSGDKREVELLAKKYEEKYKQSGDVAS 683 (965)
Q Consensus 608 aeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeq----eL~el~eeisalKRevqsLr~eyEee~KQv~eLEs 683 (965)
++...+++..+..-+..++++.+.+..++.+|+.-+...++ +|+.++++|.++..+++ ...+++.+++.
T Consensus 160 ~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~-------~~~~~l~e~~~ 232 (312)
T smart00787 160 YKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIM-------IKVKKLEELEE 232 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 33344555555555566666666666666655554444322 44444444444444444 44455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH----HHHHHHHHHHHHHHHhhCcccccc
Q 002108 684 KLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQ----NELEELVKILNDRCKQYGLRAKPT 750 (965)
Q Consensus 684 qLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iN----sel~eL~K~l~E~~qq~Gl~~K~~ 750 (965)
++...+..+.+..+++.+++.+|.+ ++...++.. .|+..|+-.+.---+..|+.....
T Consensus 233 ~l~~l~~~I~~~~~~k~e~~~~I~~---------ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g~~~~~~ 294 (312)
T smart00787 233 ELQELESKIEDLTNKKSELNTEIAE---------AEKKLEQCRGFTFKEIEKLKEQLKLLQSLTGWKITKL 294 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCeeEec
Confidence 5555555666666666666666666 222222221 444455544444455677776433
No 71
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.32 E-value=0.029 Score=56.48 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002108 718 LQQHADHIQNELEELVKILND 738 (965)
Q Consensus 718 LKeri~~iNsel~eL~K~l~E 738 (965)
|..+.......|++|.+.+.+
T Consensus 120 le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 120 LEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 72
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.31 E-value=0.00044 Score=79.10 Aligned_cols=69 Identities=22% Similarity=0.366 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHH------cCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHh
Q 002108 438 VQKYTKVFVQVDIDRDGKITGEQAYNLFL------SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYR 506 (965)
Q Consensus 438 k~ry~~~F~~lDkD~dG~ISg~Elr~~f~------ks~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI~~~~ 506 (965)
+..++.+|+.+|.|+.|.|+.+|++..+. .-.+..+++-++-+.+|.|+||+|++.||+.|.+|+.+.+
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr~~ 620 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDRRR 620 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcchh
Confidence 45678899999999999999999988772 2357889999999999999999999999999999999854
No 73
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=97.30 E-value=0.00073 Score=71.75 Aligned_cols=63 Identities=19% Similarity=0.360 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHH--cCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 002108 438 VQKYTKVFVQVDIDRDGKITGEQAYNLFL--SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALY 500 (965)
Q Consensus 438 k~ry~~~F~~lDkD~dG~ISg~Elr~~f~--ks~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~ 500 (965)
++..+++|+.+|+|+.|.|+..||+.+|. +..|+.+.+.-|++..|...+|.|.|++|+.++-
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv 187 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCV 187 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHH
Confidence 56778899999999999999999999996 4579999999999999988899999999986533
No 74
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.27 E-value=0.00039 Score=73.02 Aligned_cols=61 Identities=30% Similarity=0.456 Sum_probs=48.8
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHc----CC---------CCHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 002108 440 KYTKVFVQVDIDRDGKITGEQAYNLFLS----WR---------LPREVLKQVWDLSDQDNDGMLSLKEFCTALY 500 (965)
Q Consensus 440 ry~~~F~~lDkD~dG~ISg~Elr~~f~k----s~---------Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~ 500 (965)
++.=+|+.+|.|++|+|+.+|+..++.. .+ -+++-+..||..+|.|+||.|+++||+.++.
T Consensus 101 kl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 101 KLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred HhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 4445599999999999999998887732 11 2466788999999999999999999986544
No 75
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.23 E-value=0.00091 Score=67.87 Aligned_cols=74 Identities=20% Similarity=0.344 Sum_probs=64.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcC--CCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHhc
Q 002108 430 WPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSW--RLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYRE 507 (965)
Q Consensus 430 Wp~IS~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks--~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI~~~~~ 507 (965)
++.++..++++|+++|..+|.|+||+|..++|+.+|... ..+.++|..++.++ .|-|+|.-|+ .|+-.+++
T Consensus 23 Famf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FL---TmfGekL~ 95 (171)
T KOG0031|consen 23 FAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFL---TMFGEKLN 95 (171)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHH---HHHHHHhc
Confidence 446889999999999999999999999999999999654 47799999999986 5789998887 67777888
Q ss_pred CCC
Q 002108 508 GRP 510 (965)
Q Consensus 508 G~~ 510 (965)
|.+
T Consensus 96 gtd 98 (171)
T KOG0031|consen 96 GTD 98 (171)
T ss_pred CCC
Confidence 873
No 76
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=97.22 E-value=0.024 Score=61.40 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=16.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002108 654 TERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATF 692 (965)
Q Consensus 654 ~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~L 692 (965)
+.++..++..++.+++++++..+.+.++..+|......+
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433333
No 77
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.15 E-value=0.035 Score=55.92 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 002108 660 DKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV 733 (965)
Q Consensus 660 lKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~ 733 (965)
+.|.|+.|..+++.--+.+.....+|..++...-.+..+...|+..... +-+|++.+...|.+++
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~---------~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQ---------WEEKYEELEEKYKEAK 142 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHH---------HHHHHHHHHHHHHHhc
Confidence 4555555555555444444444444444444444444444444444444 5556666665555543
No 78
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.14 E-value=0.0011 Score=77.29 Aligned_cols=71 Identities=25% Similarity=0.451 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCC-----HHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH
Q 002108 432 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLP-----REVLKQVWDLSDQDNDGMLSLKEFCTALYLME 503 (965)
Q Consensus 432 ~IS~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks~Lp-----~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI~ 503 (965)
.+|.+|...+.+.|.++| |.+|||+..++..+|.+.++. .++++.++...+.|.+|+++|+||+.+++-+.
T Consensus 12 ~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 12 QLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred cccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 589999999999999999 999999999999999876543 78999999999999999999999997555443
No 79
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.11 E-value=0.017 Score=72.73 Aligned_cols=125 Identities=18% Similarity=0.271 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHH--------HHHHHHHHHHHhHHHHHHHH
Q 002108 620 KEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKY--------EEKYKQSGDVASKLTLEEAT 691 (965)
Q Consensus 620 ~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~ey--------Eee~KQv~eLEsqLa~~Ea~ 691 (965)
.+|.++++-++-+++.+-++..+...++++.++++.++..+++.|..++++. ++...+++.|+.+++..|..
T Consensus 337 ~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~ 416 (1074)
T KOG0250|consen 337 EEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQ 416 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888888888888888888888888777777777776655444 22222223333333333334
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 002108 692 FRDIQEKKMELYQAILKMEGES-----GDGTLQQHADHIQNELEELVKILNDRCKQYG 744 (965)
Q Consensus 692 LqDiQ~K~~ELe~AL~~~~~~~-----~n~~LKeri~~iNsel~eL~K~l~E~~qq~G 744 (965)
+..|..+++++..++..++... .-..|+.+|+.++.+|..|++...++-..+|
T Consensus 417 ~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG 474 (1074)
T KOG0250|consen 417 INSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFG 474 (1074)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc
Confidence 4444444444444444422111 1145777888888888888888777777777
No 80
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.09 E-value=0.056 Score=58.26 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002108 618 LEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVA 682 (965)
Q Consensus 618 aE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLE 682 (965)
+++.....-++++.+..++.++......++..+.++..++..+...+++...+++.--..+.+|+
T Consensus 83 lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE 147 (237)
T PF00261_consen 83 LENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELE 147 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Confidence 33333333444444444444444444444444444444444444444443333333333333333
No 81
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.08 E-value=0.0012 Score=66.07 Aligned_cols=74 Identities=19% Similarity=0.318 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHc--CCCCHHHHHHHHHHhcCC--CCCccCHHHHHHHHHHHHHHh
Q 002108 433 MTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLS--WRLPREVLKQVWDLSDQD--NDGMLSLKEFCTALYLMERYR 506 (965)
Q Consensus 433 IS~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~k--s~Lp~eeL~~IW~LaD~D--~DGkLs~dEFvvAM~LI~~~~ 506 (965)
.+++.+.+|+++|..||..+||+|++.++..+|+. .+.+..++.+.....+.+ +--+|+|++|+-++.-+.+.+
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk 82 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK 82 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc
Confidence 45777899999999999999999999999999965 466788999999888877 557899999986665555443
No 82
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.06 E-value=0.053 Score=62.94 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=51.6
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHH
Q 002108 601 LNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKY 671 (965)
Q Consensus 601 Lns~~qeaeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~ey 671 (965)
|.+..+++++.++++.+...+...+..+|..+++.+..+..+..+..++|+++..+|+.++..++.|+.+.
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44444566666666666666777777777777777777777888888888888888888888888776555
No 83
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.06 E-value=0.049 Score=58.67 Aligned_cols=60 Identities=17% Similarity=0.282 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 002108 615 VEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEK 674 (965)
Q Consensus 615 l~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee 674 (965)
+..++.++.......+--..++.++..+..-.+++|....+++......+..|..++...
T Consensus 94 i~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~ 153 (237)
T PF00261_consen 94 IEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSV 153 (237)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333333
No 84
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=97.03 E-value=0.021 Score=70.51 Aligned_cols=91 Identities=11% Similarity=0.062 Sum_probs=52.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHH
Q 002108 657 VSGDKREVELLAKKYEEKYKQS-GDVASKLTLEEATFRDIQEKKMELYQAILKME-GESGDGTLQQHADHIQNELEELVK 734 (965)
Q Consensus 657 isalKRevqsLr~eyEee~KQv-~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~-~~~~n~~LKeri~~iNsel~eL~K 734 (965)
+.+++++++.|+.+++++++.+ ..++.+++.+.++.+.|+.++.++++.+.++- .+.+-..|+.+.+..+.-|+.|.+
T Consensus 318 v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~ 397 (754)
T TIGR01005 318 VVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLT 397 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555443 44455555555666666666666666665533 333345566666666677777776
Q ss_pred HHHHHHHhhCccc
Q 002108 735 ILNDRCKQYGLRA 747 (965)
Q Consensus 735 ~l~E~~qq~Gl~~ 747 (965)
.+.|.+-+..+..
T Consensus 398 r~~e~~~~~~~~~ 410 (754)
T TIGR01005 398 NYRQAASRQNYVP 410 (754)
T ss_pred HHHHHHHhhcCCC
Confidence 6666666655443
No 85
>PLN02964 phosphatidylserine decarboxylase
Probab=97.01 E-value=0.0019 Score=78.31 Aligned_cols=70 Identities=20% Similarity=0.297 Sum_probs=41.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcC---CCCHHH---HHHHHHHhcCCCCCccCHHHHHHHHH
Q 002108 427 HVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSW---RLPREV---LKQVWDLSDQDNDGMLSLKEFCTALY 500 (965)
Q Consensus 427 ~~~Wp~IS~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks---~Lp~ee---L~~IW~LaD~D~DGkLs~dEFvvAM~ 500 (965)
..+|-.++..|++++.++|+.||+|++|+| +..+|... ..++++ +..++..+|.|++|.|+|+||+.+|.
T Consensus 131 e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~ 206 (644)
T PLN02964 131 ELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIK 206 (644)
T ss_pred eecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 455555666666666666666666666665 44444322 344433 56666666666666666666665554
No 86
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.01 E-value=0.014 Score=73.45 Aligned_cols=98 Identities=19% Similarity=0.291 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHH-------HHHHHHHHHHHHHHHHHh
Q 002108 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVE-------LLAKKYEEKYKQSGDVAS 683 (965)
Q Consensus 611 a~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevq-------sLr~eyEee~KQv~eLEs 683 (965)
..+++.+.+.+|...+++++.|+.++.+.+.+..++.+.|+++..++..+++++. .+++.++...+.+.+|+.
T Consensus 279 ~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~ 358 (1074)
T KOG0250|consen 279 VERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKE 358 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666666666666555555544443 344444444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 684 KLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 684 qLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
++..++..++.++..+..|+..|..
T Consensus 359 ~~~~~~n~i~~~k~~~d~l~k~I~~ 383 (1074)
T KOG0250|consen 359 EIREIENSIRKLKKEVDRLEKQIAD 383 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555544444
No 87
>PF14658 EF-hand_9: EF-hand domain
Probab=97.00 E-value=0.0012 Score=58.42 Aligned_cols=59 Identities=14% Similarity=0.264 Sum_probs=53.4
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhcCC---CHHHHHHHHHHhCCCCC-CCcCHHHHHHHHHH
Q 002108 14 AYFRRADLDGDGQISGAEAVAFFQGSNL---PKQVLAQVWSHADQRKA-GFLNRAEFFNALKL 72 (965)
Q Consensus 14 ~vF~~lD~D~DGkISg~Ea~~ff~~SgL---p~~~LaqIW~LaD~d~D-G~LdreEF~vAm~L 72 (965)
..|+.+|.++.|+|....++.+|+..+. .++.|..+-+.+|+++. |.|+++.|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4699999999999999999999997654 66779999999999887 99999999999974
No 88
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.98 E-value=0.056 Score=61.16 Aligned_cols=69 Identities=19% Similarity=0.133 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 671 YEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRC 740 (965)
Q Consensus 671 yEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l~E~~ 740 (965)
|++...++.+++.++..+++++..++.++.+++.++...... ....+++++..++.++.+++..+....
T Consensus 198 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~~~~l~~~~~~l~~~~~~l~~~~ 266 (423)
T TIGR01843 198 LLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQT-FREEVLEELTEAQARLAELRERLNKAR 266 (423)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444445555555555555555554444442200 012345566666667766664444433
No 89
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.98 E-value=0.015 Score=68.14 Aligned_cols=56 Identities=11% Similarity=0.079 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 002108 690 ATFRDIQEKKMELYQAILKME-GESGDGTLQQHADHIQNELEELVKILNDRCKQYGL 745 (965)
Q Consensus 690 a~LqDiQ~K~~ELe~AL~~~~-~~~~n~~LKeri~~iNsel~eL~K~l~E~~qq~Gl 745 (965)
+++..++.++.++++.+.++- .+.+-..|+.+++.....|+.|.+.+.|++-...+
T Consensus 331 ~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~~~~ 387 (498)
T TIGR03007 331 ARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVSKQM 387 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 333344444444444443322 22233456666666666666666666666544444
No 90
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.97 E-value=0.0056 Score=57.46 Aligned_cols=66 Identities=11% Similarity=0.125 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHc-------CCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH
Q 002108 437 EVQKYTKVFVQVDIDRDGKITGEQAYNLFLS-------WRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLME 503 (965)
Q Consensus 437 Ek~ry~~~F~~lDkD~dG~ISg~Elr~~f~k-------s~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI~ 503 (965)
-+.-+..+|..+-. +.+.++..|++.+|.+ ..-..+.|.+|+...|.|+||+|+|.||+..+--+.
T Consensus 6 ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 6 SMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 35678889999984 4679999999999943 234578899999999999999999999997665443
No 91
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.97 E-value=0.0014 Score=75.21 Aligned_cols=69 Identities=25% Similarity=0.327 Sum_probs=61.7
Q ss_pred CHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc------CCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHH
Q 002108 8 NSDLFEAYFRRADLDGDGQISGAEAVAFFQGS------NLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVA 76 (965)
Q Consensus 8 e~~~Y~~vF~~lD~D~DGkISg~Ea~~ff~~S------gLp~~~LaqIW~LaD~d~DG~LdreEF~vAm~LV~lA 76 (965)
++.-.+.||+++|.|..|.|+.+|++..+.-. .+..+.+-++-+..|.|+||+||..||..|.+||...
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr~ 619 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDRR 619 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcch
Confidence 45667899999999999999999999877532 5888999999999999999999999999999999873
No 92
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.96 E-value=0.073 Score=58.64 Aligned_cols=59 Identities=15% Similarity=0.239 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHH
Q 002108 608 ATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVEL 666 (965)
Q Consensus 608 aeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqs 666 (965)
+.++.+++.+++++|..+.+|++....+.++++.+..+.+.+++++..+|..++..|..
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555555555555555543
No 93
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.96 E-value=0.0017 Score=74.70 Aligned_cols=57 Identities=28% Similarity=0.366 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHH
Q 002108 438 VQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (965)
Q Consensus 438 k~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI~~~ 505 (965)
+..++.+|+.+|.|+||+|+.+|+.. +..+|+.+|.|+||+|+++||..+|.-+.+.
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-----------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~~ 389 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-----------SDAVFDALDLNHDGKITPEEMRAGLGAALRL 389 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-----------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHHh
Confidence 56788999999999999999999842 5789999999999999999999888776653
No 94
>PRK03918 chromosome segregation protein; Provisional
Probab=96.93 E-value=0.063 Score=67.07 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002108 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDN 648 (965)
Q Consensus 611 a~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeq 648 (965)
+..++.+++.++..+..++..++.++.++........+
T Consensus 191 i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~ 228 (880)
T PRK03918 191 IEELIKEKEKELEEVLREINEISSELPELREELEKLEK 228 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444333
No 95
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=96.93 E-value=0.0019 Score=64.61 Aligned_cols=59 Identities=17% Similarity=0.380 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhcCCCCCccCHHHHHH
Q 002108 438 VQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCT 497 (965)
Q Consensus 438 k~ry~~~F~~lDkD~dG~ISg~Elr~~f--~ks~Lp~eeL~~IW~LaD~D~DGkLs~dEFvv 497 (965)
.+.|.+-++.||++++|+|.+.|||.+| ++.+|+.+++..++.-. .|++|.|+|+.|+.
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk 147 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVK 147 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHH
Confidence 3578888999999999999999999999 56789999999998764 47789999999984
No 96
>PRK02224 chromosome segregation protein; Provisional
Probab=96.92 E-value=0.043 Score=68.68 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=7.9
Q ss_pred CccccccCCCCcccc
Q 002108 942 AESVWGFDTDNSKVC 956 (965)
Q Consensus 942 ~~svwg~~~~~~~~~ 956 (965)
.|.||++....+.+|
T Consensus 860 ad~~~~~~~~~~~~~ 874 (880)
T PRK02224 860 ADDLVRVEKDPTTNR 874 (880)
T ss_pred cCeeEEeecCCCcCc
Confidence 455666654444444
No 97
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.90 E-value=0.082 Score=59.56 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=7.4
Q ss_pred CCccCHHHHHH
Q 002108 487 DGMLSLKEFCT 497 (965)
Q Consensus 487 DGkLs~dEFvv 497 (965)
-..|++.+|+.
T Consensus 11 ~~~isL~~FL~ 21 (325)
T PF08317_consen 11 YEPISLQDFLN 21 (325)
T ss_pred CCCcCHHHHHH
Confidence 34578888873
No 98
>PLN02964 phosphatidylserine decarboxylase
Probab=96.88 E-value=0.0022 Score=77.90 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=56.5
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcC--CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Q 002108 10 DLFEAYFRRADLDGDGQISGAEAVAFFQGSN--LPKQVLAQVWSHADQRKAGFLNRAEFFNALKL 72 (965)
Q Consensus 10 ~~Y~~vF~~lD~D~DGkISg~Ea~~ff~~Sg--Lp~~~LaqIW~LaD~d~DG~LdreEF~vAm~L 72 (965)
...+.+|..+|.|+||.|+.+|+..++...+ .+++.|..+|+.+|.|+||+|+.+||...|..
T Consensus 179 ~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 179 SFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 3578999999999999999999999998765 77888999999999999999999999988766
No 99
>PRK03918 chromosome segregation protein; Provisional
Probab=96.88 E-value=0.063 Score=67.09 Aligned_cols=17 Identities=12% Similarity=0.130 Sum_probs=12.4
Q ss_pred ccchhhhhcccccccch
Q 002108 768 ADWDEDWDKLEDEGFTF 784 (965)
Q Consensus 768 ~~w~e~w~~~~d~~f~~ 784 (965)
..+++-|.+|.+.+|.+
T Consensus 747 ~~~~~if~~l~~~~~~~ 763 (880)
T PRK03918 747 EIASEIFEELTEGKYSG 763 (880)
T ss_pred HHHHHHHHHHcCCCeeE
Confidence 45677788888777774
No 100
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.88 E-value=0.0021 Score=73.98 Aligned_cols=55 Identities=27% Similarity=0.348 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHH
Q 002108 9 SDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVT 74 (965)
Q Consensus 9 ~~~Y~~vF~~lD~D~DGkISg~Ea~~ff~~SgLp~~~LaqIW~LaD~d~DG~LdreEF~vAm~LV~ 74 (965)
...++.+|+.+|.|+||+|+.+|+.. +..+|+.+|.|+||.|+++||..+|+-+.
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-----------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-----------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-----------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 56788999999999999999999842 57899999999999999999999988664
No 101
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.83 E-value=0.06 Score=67.28 Aligned_cols=102 Identities=15% Similarity=0.168 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002108 623 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMEL 702 (965)
Q Consensus 623 ~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~EL 702 (965)
.++...++.+..++++-...-.+++++.+.+..++.++++++..++..+++..++++.|++++..+++.+..++.-+.++
T Consensus 790 kdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~ 869 (1174)
T KOG0933|consen 790 KDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKA 869 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Confidence 33333344444444444444444555566666666677777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 002108 703 YQAILKMEGESGDGTLQQHADHIQNELEELV 733 (965)
Q Consensus 703 e~AL~~~~~~~~n~~LKeri~~iNsel~eL~ 733 (965)
+++|.. ++.+++.++.++..|.
T Consensus 870 ~~el~~---------~k~k~~~~dt~i~~~~ 891 (1174)
T KOG0933|consen 870 QAELKD---------QKAKQRDIDTEISGLL 891 (1174)
T ss_pred HHHHHH---------HHHHHHhhhHHHhhhh
Confidence 777777 6677777776665443
No 102
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.82 E-value=0.054 Score=55.89 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002108 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCD 647 (965)
Q Consensus 613 kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksrae 647 (965)
..+.+++.++.++++++..+.+.+.++......+.
T Consensus 88 ~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 88 QQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44444444444444444444444444444443333
No 103
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.81 E-value=0.033 Score=62.33 Aligned_cols=115 Identities=14% Similarity=0.234 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002108 623 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMEL 702 (965)
Q Consensus 623 ~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~EL 702 (965)
..+......|..+-|.|. ..|-.+|.+.+.+|+.+..++.+-..++..+..+|..|.++|++.+..++.+-....+|
T Consensus 184 ~~L~~et~~~EekEqqLv---~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL 260 (306)
T PF04849_consen 184 SQLKTETDTYEEKEQQLV---LDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEEL 260 (306)
T ss_pred HHhhHHHhhccHHHHHHH---HHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344444446666666664 44888899999999999999999888999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002108 703 YQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQ 742 (965)
Q Consensus 703 e~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l~E~~qq 742 (965)
...|...+ .....|+.++..++..|.+...++.|+...
T Consensus 261 ~q~L~~sk--e~Q~~L~aEL~elqdkY~E~~~mL~EaQEE 298 (306)
T PF04849_consen 261 QQHLQASK--ESQRQLQAELQELQDKYAECMAMLHEAQEE 298 (306)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999944 333458888888888888888888887765
No 104
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.80 E-value=0.0015 Score=48.77 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=23.9
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH
Q 002108 440 KYTKVFVQVDIDRDGKITGEQAYNLFL 466 (965)
Q Consensus 440 ry~~~F~~lDkD~dG~ISg~Elr~~f~ 466 (965)
+|+.+|+.+|+|++|+|+.+|++.+|.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 578999999999999999999999987
No 105
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.78 E-value=0.02 Score=66.29 Aligned_cols=17 Identities=18% Similarity=0.456 Sum_probs=13.2
Q ss_pred CCCHHHHHHHHHHHHhh
Q 002108 432 KMTHSEVQKYTKVFVQV 448 (965)
Q Consensus 432 ~IS~eEk~ry~~~F~~l 448 (965)
.|+..|.-+|...|...
T Consensus 85 ~mt~~Dll~F~~~~~~~ 101 (493)
T KOG0804|consen 85 YMTSHDLLRFCASFIKQ 101 (493)
T ss_pred cccHHHHHHHHHHHhhh
Confidence 58888888888877653
No 106
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.77 E-value=0.061 Score=71.21 Aligned_cols=28 Identities=18% Similarity=0.051 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 002108 718 LQQHADHIQNELEELVKILNDRCKQYGL 745 (965)
Q Consensus 718 LKeri~~iNsel~eL~K~l~E~~qq~Gl 745 (965)
|++++..+...++.|.+.++..|...|-
T Consensus 461 lE~kL~~lea~leql~~~~~~l~~~~Gk 488 (1486)
T PRK04863 461 LEQKLSVAQAAHSQFEQAYQLVRKIAGE 488 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333333333333444444444444443
No 107
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.76 E-value=0.087 Score=58.04 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHH
Q 002108 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAK 669 (965)
Q Consensus 613 kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~ 669 (965)
.++.+++.+..+.+++|+.+..+..++..+....+.+.+++..+|..++.+|..|+.
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444433
No 108
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.76 E-value=0.084 Score=63.17 Aligned_cols=124 Identities=13% Similarity=0.166 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHH-----------------HHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHH
Q 002108 610 EADKKVEELEKEILTSREKIQFCST-KMQ-----------------ELILYKSRCDNRLNEITERVSGDKREVELLAKKY 671 (965)
Q Consensus 610 Ea~kKl~eaE~ei~~~~eKi~~y~s-KmQ-----------------ELq~~ksraeqeL~el~eeisalKRevqsLr~ey 671 (965)
++..++.....+|..++.++..|.. ++. -+......+...|..++.++..++..+++|+.++
T Consensus 239 ~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~EL 318 (522)
T PF05701_consen 239 DLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSEL 318 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666654443 222 2333444445566667777778888888999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC----CCchHHHHHHHHHHHHHHHH
Q 002108 672 EEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME-GES----GDGTLQQHADHIQNELEELV 733 (965)
Q Consensus 672 Eee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~-~~~----~n~~LKeri~~iNsel~eL~ 733 (965)
+.+...+..+..+..........|..++..+...|..+. ... .-..|...|.++..+..+.+
T Consensus 319 e~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak 385 (522)
T PF05701_consen 319 EKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAK 385 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888888888888888888887754 111 12334445555554444443
No 109
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.75 E-value=0.12 Score=58.50 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002108 718 LQQHADHIQNELEELVK 734 (965)
Q Consensus 718 LKeri~~iNsel~eL~K 734 (965)
++.++..++.+++.++.
T Consensus 251 ~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 251 AQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55566666666655543
No 110
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.74 E-value=0.088 Score=69.73 Aligned_cols=72 Identities=13% Similarity=0.151 Sum_probs=40.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Q 002108 675 YKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME-G-------ESGDGTLQQHADHIQNELEELVKILNDRCKQYGLR 746 (965)
Q Consensus 675 ~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~-~-------~~~n~~LKeri~~iNsel~eL~K~l~E~~qq~Gl~ 746 (965)
.+++.+|+.++...+..+..++.++.+++.++..++ - .-.+..|+..++++...++++...+++.-+++...
T Consensus 389 EeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~l 468 (1486)
T PRK04863 389 EEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVA 468 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444455555554554444433 1 11246788888888888888887777766666533
No 111
>PRK02224 chromosome segregation protein; Provisional
Probab=96.71 E-value=0.077 Score=66.51 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=8.0
Q ss_pred hhHHHHHHhhhhHHHHHHHH
Q 002108 649 RLNEITERVSGDKREVELLA 668 (965)
Q Consensus 649 eL~el~eeisalKRevqsLr 668 (965)
++.++..++++++.++.+|.
T Consensus 573 ~~~~~~~~~~~l~~~~~~le 592 (880)
T PRK02224 573 EVAELNSKLAELKERIESLE 592 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443333
No 112
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=96.70 E-value=0.0061 Score=69.91 Aligned_cols=73 Identities=19% Similarity=0.184 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCC---CHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHH
Q 002108 433 MTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRL---PREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (965)
Q Consensus 433 IS~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks~L---p~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI~~~ 505 (965)
..++...+++.+|+.||.+++|+|+.+++...|..... ..+....|+..+|.|.||.++|.||..+|.--+..
T Consensus 8 ~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~ 83 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELE 83 (463)
T ss_pred CcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHH
Confidence 45666789999999999999999999999998876543 46778889999999999999999999876655543
No 113
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=96.70 E-value=0.002 Score=48.15 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=13.6
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHH
Q 002108 441 YTKVFVQVDIDRDGKITGEQAYNLFL 466 (965)
Q Consensus 441 y~~~F~~lDkD~dG~ISg~Elr~~f~ 466 (965)
++.+|+.+|+|+||+|+.+|++.+|.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 34455555555555555555555543
No 114
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.69 E-value=0.1 Score=62.53 Aligned_cols=14 Identities=21% Similarity=0.753 Sum_probs=8.4
Q ss_pred cccccccchhhhhc
Q 002108 763 IQEGTADWDEDWDK 776 (965)
Q Consensus 763 ~qe~a~~w~e~w~~ 776 (965)
+.|+.+.|+.+=-.
T Consensus 348 lke~~~q~~qEk~~ 361 (546)
T PF07888_consen 348 LKEGRSQWAQEKQA 361 (546)
T ss_pred HHHHHHHHHHHHHH
Confidence 46777777754433
No 115
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=96.68 E-value=0.0036 Score=65.88 Aligned_cols=70 Identities=23% Similarity=0.227 Sum_probs=55.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHH--cCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHhcC
Q 002108 439 QKYTKVFVQVDIDRDGKITGEQAYNLFL--SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYREG 508 (965)
Q Consensus 439 ~ry~~~F~~lDkD~dG~ISg~Elr~~f~--ks~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI~~~~~G 508 (965)
...+.+|..||+|+||+|+-.|+...|. ..|-.++-|.=.+.+.|.|+||.|+++|++.++.-|......
T Consensus 64 ~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~ 135 (193)
T KOG0044|consen 64 KYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGS 135 (193)
T ss_pred HHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHccc
Confidence 3445679999999999999999777773 335667778878899999999999999999777766665544
No 116
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=96.67 E-value=0.0018 Score=48.36 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCCCCccCHHHHHHHHH
Q 002108 474 VLKQVWDLSDQDNDGMLSLKEFCTALY 500 (965)
Q Consensus 474 eL~~IW~LaD~D~DGkLs~dEFvvAM~ 500 (965)
+++.+++.+|.|+||.|+++||+.+|.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 578999999999999999999998775
No 117
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.67 E-value=0.053 Score=59.89 Aligned_cols=110 Identities=24% Similarity=0.302 Sum_probs=63.5
Q ss_pred HHHHHhHHHhHH----HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHH
Q 002108 599 ESLNAKLKEATE----ADKKVEELEKEILTSREK--------IQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVEL 666 (965)
Q Consensus 599 ~~Lns~~qeaeE----a~kKl~eaE~ei~~~~eK--------i~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqs 666 (965)
..||..|+.|=+ ...+-..++.+|..++.+ ...|...+.++......+..+-..+..++..++.+++.
T Consensus 7 ~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~ 86 (312)
T PF00038_consen 7 QSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELED 86 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHH
Confidence 467777777754 222233344445444433 12466666666666666666666666667777777778
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 667 LAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 667 Lr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
++.+|+.+.+.+..++..|......+.+.-....+|+..++.
T Consensus 87 ~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~ 128 (312)
T PF00038_consen 87 LRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQS 128 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHH
Confidence 888888887777777766655554444444444444444444
No 118
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.66 E-value=0.099 Score=67.96 Aligned_cols=9 Identities=11% Similarity=0.088 Sum_probs=3.8
Q ss_pred HHHhhCccc
Q 002108 739 RCKQYGLRA 747 (965)
Q Consensus 739 ~~qq~Gl~~ 747 (965)
++..+|.|+
T Consensus 957 ~i~~lg~VN 965 (1163)
T COG1196 957 EIEALGPVN 965 (1163)
T ss_pred HHHhccCCC
Confidence 334444443
No 119
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.65 E-value=0.054 Score=53.56 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 002108 718 LQQHADHIQNELEELV 733 (965)
Q Consensus 718 LKeri~~iNsel~eL~ 733 (965)
++.|++.++.+-.-|.
T Consensus 110 ~~~r~~dL~~QN~lLh 125 (132)
T PF07926_consen 110 LEQRIEDLNEQNKLLH 125 (132)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666655555444
No 120
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.65 E-value=0.14 Score=57.65 Aligned_cols=58 Identities=16% Similarity=0.075 Sum_probs=27.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 651 NEITERVSGDKREVELLAKKYEEK----YKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 651 ~el~eeisalKRevqsLr~eyEee----~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
.++.++...++.++..|+...++. -.....+.++|+.....+...+.++.+++.+|.+
T Consensus 175 ~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~ 236 (312)
T smart00787 175 PKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQE 236 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555444333331 1123334445555555555555555555555555
No 121
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=96.60 E-value=0.066 Score=61.84 Aligned_cols=31 Identities=6% Similarity=0.140 Sum_probs=13.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002108 652 EITERVSGDKREVELLAKKYEEKYKQSGDVA 682 (965)
Q Consensus 652 el~eeisalKRevqsLr~eyEee~KQv~eLE 682 (965)
.+..++.+++.++..|+..|.+.+-++.+++
T Consensus 258 ~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~ 288 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQRLGPNHPQYKRAQ 288 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 3344444444444444444444433333333
No 122
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.58 E-value=0.014 Score=54.93 Aligned_cols=68 Identities=9% Similarity=0.139 Sum_probs=56.9
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH-------hcCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcC
Q 002108 11 LFEAYFRRADLDGDGQISGAEAVAFFQ-------GSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSK 79 (965)
Q Consensus 11 ~Y~~vF~~lD~D~DGkISg~Ea~~ff~-------~SgLp~~~LaqIW~LaD~d~DG~LdreEF~vAm~LV~lAQ~G 79 (965)
....+|..+-- ..+.++..|++.++. +..-++..+.+|+..+|.|+||.||+.||+..+.-|++|...
T Consensus 9 ~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ac~~ 83 (91)
T cd05024 9 KMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIACND 83 (91)
T ss_pred HHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 45567888874 456999999999885 335578999999999999999999999999999999888653
No 123
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.58 E-value=0.17 Score=62.70 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002108 636 MQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVAS 683 (965)
Q Consensus 636 mQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEs 683 (965)
++++..+..-.+++.+++++.++.++.+=..|..+|++..||++.-+.
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~ 459 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQ 459 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555555544433
No 124
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.54 E-value=0.12 Score=61.98 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=18.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Q 002108 714 GDGTLQQHADHIQNELEELVKILNDRCKQYGLRA 747 (965)
Q Consensus 714 ~n~~LKeri~~iNsel~eL~K~l~E~~qq~Gl~~ 747 (965)
.+..++.+++.+..+|..++..+....++..+..
T Consensus 277 ~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~ 310 (546)
T PF07888_consen 277 QAQQLQQENEALKEQLRSAQEQLQASQQEAELLR 310 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555544
No 125
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.54 E-value=0.14 Score=68.67 Aligned_cols=18 Identities=0% Similarity=-0.016 Sum_probs=10.4
Q ss_pred HHHhcCCCHHHHHHHHHH
Q 002108 35 FFQGSNLPKQVLAQVWSH 52 (965)
Q Consensus 35 ff~~SgLp~~~LaqIW~L 52 (965)
.|...|+..+...-||..
T Consensus 328 a~~ilgfs~~E~~~~~~i 345 (1930)
T KOG0161|consen 328 AMDILGFSEEEKISIFRI 345 (1930)
T ss_pred HHHHhCCCHHHHHHHHHH
Confidence 344456666666666654
No 126
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.48 E-value=0.15 Score=62.47 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHH
Q 002108 623 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAK 669 (965)
Q Consensus 623 ~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~ 669 (965)
++++---+-+..+|.++..+.+..+++|.+-.+.+..+++|++.|++
T Consensus 259 ~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkq 305 (1265)
T KOG0976|consen 259 MDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQ 305 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33333334456677777888888888888777777777777776543
No 127
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.47 E-value=0.16 Score=64.64 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=9.4
Q ss_pred cHHHHHHHHHcCCCC
Q 002108 457 TGEQAYNLFLSWRLP 471 (965)
Q Consensus 457 Sg~Elr~~f~ks~Lp 471 (965)
+...+..||.+-+|+
T Consensus 653 ~aq~cI~fl~~~nLg 667 (1293)
T KOG0996|consen 653 TAQECINFLKKNNLG 667 (1293)
T ss_pred HHHHHHHHHHHcCCC
Confidence 455677777665554
No 128
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.46 E-value=0.033 Score=58.25 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 002108 718 LQQHADHIQNELEELV 733 (965)
Q Consensus 718 LKeri~~iNsel~eL~ 733 (965)
|.++++.+..|..+|.
T Consensus 163 ~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 163 LEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555555
No 129
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.46 E-value=0.098 Score=68.26 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhCccc
Q 002108 724 HIQNELEELVKILNDRCKQYGLRA 747 (965)
Q Consensus 724 ~iNsel~eL~K~l~E~~qq~Gl~~ 747 (965)
++..++++|++.++..-+.+|+..
T Consensus 747 ~~~~~~~~le~~~~~eL~~~GvD~ 770 (1201)
T PF12128_consen 747 EAKEQLKELEQQYNQELAGKGVDP 770 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCH
Confidence 333455566666666677778766
No 130
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.45 E-value=0.27 Score=48.64 Aligned_cols=16 Identities=19% Similarity=0.497 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 002108 718 LQQHADHIQNELEELV 733 (965)
Q Consensus 718 LKeri~~iNsel~eL~ 733 (965)
|+.+|..+...+++|.
T Consensus 103 le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 103 LEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 131
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.45 E-value=0.11 Score=61.73 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 002108 692 FRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV 733 (965)
Q Consensus 692 LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~ 733 (965)
+..+..++..|+..+.+++.. ...+.++++++..+|++|.
T Consensus 353 i~~~~~~~~~l~~ei~~l~~~--~~~~~~~l~~l~~~l~~~~ 392 (562)
T PHA02562 353 LITLVDKAKKVKAAIEELQAE--FVDNAEELAKLQDELDKIV 392 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--hhchHHHHHHHHHHHHHHH
Confidence 333334444444444443311 1223344444444444433
No 132
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.44 E-value=0.43 Score=48.32 Aligned_cols=62 Identities=18% Similarity=0.159 Sum_probs=31.2
Q ss_pred hhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 647 DNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 647 eqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
..+|..++.++..+.-++..|+.+-++-.+++...+.++...|....++.+.+..+++...+
T Consensus 58 ~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q 119 (140)
T PF10473_consen 58 EEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQ 119 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444555555555555555555555666655555444
No 133
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.41 E-value=0.2 Score=62.50 Aligned_cols=123 Identities=13% Similarity=0.143 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002108 610 EADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE 689 (965)
Q Consensus 610 Ea~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~E 689 (965)
.+.-+|.....+|..++-++..+..+-.++......+...|.....+.+-+.-+++.||.+++....++...+.+|..++
T Consensus 291 ~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~q 370 (775)
T PF10174_consen 291 RLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQ 370 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566677777777777777777766677777777888888888889999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 690 ATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCK 741 (965)
Q Consensus 690 a~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l~E~~q 741 (965)
..+..++.++.+|...+.. ...+|+.++..|+.|...+.|+-+
T Consensus 371 eE~~~~~~Ei~~l~d~~d~---------~e~ki~~Lq~kie~Lee~l~ekd~ 413 (775)
T PF10174_consen 371 EEKSRLQGEIEDLRDMLDK---------KERKINVLQKKIENLEEQLREKDR 413 (775)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877 555666666666655544444433
No 134
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.41 E-value=0.15 Score=64.94 Aligned_cols=49 Identities=18% Similarity=0.271 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHH
Q 002108 623 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKY 671 (965)
Q Consensus 623 ~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~ey 671 (965)
...+++...+..+++++..+..+.+..|+.+...+..++.+++..+.+.
T Consensus 380 ~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~ 428 (1293)
T KOG0996|consen 380 KELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKK 428 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3344455555566666665555555555555555555555555443333
No 135
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.39 E-value=0.015 Score=65.38 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 002108 718 LQQHADHIQNELEELV 733 (965)
Q Consensus 718 LKeri~~iNsel~eL~ 733 (965)
|+.+++..+.+|+.|+
T Consensus 118 l~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 118 LKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666666665
No 136
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.39 E-value=0.15 Score=56.97 Aligned_cols=80 Identities=26% Similarity=0.237 Sum_probs=55.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 002108 605 LKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK 684 (965)
Q Consensus 605 ~qeaeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsq 684 (965)
+..+.++..++.++..++..++++.+-+..+..++..+...+-.+.+++.+++.++|.+...+..+++.-++.+..|-..
T Consensus 19 k~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~ 98 (294)
T COG1340 19 KEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEK 98 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777778888888888888888887777777777777777777777766666655555555555555444
No 137
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=96.34 E-value=0.013 Score=62.52 Aligned_cols=65 Identities=18% Similarity=0.252 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhc--CCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHH
Q 002108 9 SDLFEAYFRRADLDGDGQISGAEAVAFFQGS--NLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLV 73 (965)
Q Consensus 9 ~~~Y~~vF~~lD~D~DGkISg~Ea~~ff~~S--gLp~~~LaqIW~LaD~d~DG~LdreEF~vAm~LV 73 (965)
...|+++|..+|.|+.|.|+-.|++..|... .|++..+..|.+..|....|.|.+++|+.++--+
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH
Confidence 3568899999999999999999999999876 5999999999999998878999999999876543
No 138
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.34 E-value=0.17 Score=62.79 Aligned_cols=98 Identities=24% Similarity=0.346 Sum_probs=57.9
Q ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHH--
Q 002108 599 ESLNAKLKEATEADKKVEELEKEILTSREKIQ--FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEK-- 674 (965)
Q Consensus 599 ~~Lns~~qeaeEa~kKl~eaE~ei~~~~eKi~--~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee-- 674 (965)
+.|...++++.+++.-..+.-.++++...-|+ .+.+.|-| ......+++|..+++|+.++.-+++.|+.|.+++
T Consensus 283 rel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAE--ERaesLQ~eve~lkEr~deletdlEILKaEmeekG~ 360 (1243)
T KOG0971|consen 283 RELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAE--ERAESLQQEVEALKERVDELETDLEILKAEMEEKGS 360 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33444444554433322223334444444444 33333333 3444567778888888888888999999888875
Q ss_pred ---------HHHHHHHHhHHHHHHHHHHHHHHH
Q 002108 675 ---------YKQSGDVASKLTLEEATFRDIQEK 698 (965)
Q Consensus 675 ---------~KQv~eLEsqLa~~Ea~LqDiQ~K 698 (965)
+||++....+|.++=-+|+|+-..
T Consensus 361 ~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ 393 (1243)
T KOG0971|consen 361 DGQAASSYQFKQLEQQNARLKDALVRLRDLSAS 393 (1243)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 466666666666666666666544
No 139
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.34 E-value=0.25 Score=62.57 Aligned_cols=87 Identities=16% Similarity=0.208 Sum_probs=47.6
Q ss_pred hhhhhhHHHHHHhhhhHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 002108 645 RCDNRLNEITERVSGDKREVELLAKKYEEKY-------KQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGT 717 (965)
Q Consensus 645 raeqeL~el~eeisalKRevqsLr~eyEee~-------KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~ 717 (965)
.++.-+....+++.+|.+.++.|+.+|-+.- |.+..+..+-..+|..++.||.++.-+.+-|++ . -..+..
T Consensus 1609 ~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~-r-~~g~~~ 1686 (1758)
T KOG0994|consen 1609 AAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEK-R-MEGSQA 1686 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hhcchh
Confidence 3444455556666666666666655544332 333333344445566677888777755444444 2 222344
Q ss_pred HHHHHHHHHHHHHHHH
Q 002108 718 LQQHADHIQNELEELV 733 (965)
Q Consensus 718 LKeri~~iNsel~eL~ 733 (965)
.++|++++..+-.+|.
T Consensus 1687 ar~rAe~L~~eA~~Ll 1702 (1758)
T KOG0994|consen 1687 ARERAEQLRTEAEKLL 1702 (1758)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666776666666555
No 140
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.33 E-value=0.18 Score=60.46 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=10.9
Q ss_pred chHHHHHHHHHHHHH
Q 002108 716 GTLQQHADHIQNELE 730 (965)
Q Consensus 716 ~~LKeri~~iNsel~ 730 (965)
..|+.-|++|..+|+
T Consensus 245 ~eL~~Ai~eiRaqye 259 (546)
T KOG0977|consen 245 NELALAIREIRAQYE 259 (546)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457777777777777
No 141
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.32 E-value=0.22 Score=67.00 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 670 KYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 670 eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
.+++..+++.+|+.+|...|.++.+++.++.++.+.+.+
T Consensus 1056 ~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~ 1094 (1930)
T KOG0161|consen 1056 SIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQ 1094 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 333344666677777777777777776666666666666
No 142
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.27 E-value=0.11 Score=57.11 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002108 614 KVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFR 693 (965)
Q Consensus 614 Kl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~Lq 693 (965)
|+.++|.++..+......-+-+|.-|+....+..+...+-+.+++.++|+.++|...|++..|....|.-.|..-|
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke---- 94 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKE---- 94 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhH----
Confidence 3444444444443333322233333333222222333444456678999999999888888777766555544444
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Q 002108 694 DIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKIL 736 (965)
Q Consensus 694 DiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l 736 (965)
.+++=|+.+|.. .|..|++++.++..|+.-|
T Consensus 95 ---~qv~~lEgQl~s---------~Kkqie~Leqelkr~KsEL 125 (307)
T PF10481_consen 95 ---SQVNFLEGQLNS---------CKKQIEKLEQELKRCKSEL 125 (307)
T ss_pred ---HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 345556666666 7777777777776655443
No 143
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.23 E-value=0.17 Score=53.78 Aligned_cols=129 Identities=19% Similarity=0.235 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHH----------HHHHHHHHHHHHHHHHHhHHHHH
Q 002108 619 EKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVE----------LLAKKYEEKYKQSGDVASKLTLE 688 (965)
Q Consensus 619 E~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevq----------sLr~eyEee~KQv~eLEsqLa~~ 688 (965)
-.+|.+++.+.....+.|.++.....+.-.-|.....++..+++.+. .++..+....+++..|+-...+.
T Consensus 33 Keei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL 112 (201)
T PF13851_consen 33 KEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVL 112 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444444444444444433333 22333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHH----Hh--cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Q 002108 689 EATFRDIQEKKMELYQAILK----ME--GESGDGTLQQHADHIQNELEELVKILNDRCKQYGLRA 747 (965)
Q Consensus 689 Ea~LqDiQ~K~~ELe~AL~~----~~--~~~~n~~LKeri~~iNsel~eL~K~l~E~~qq~Gl~~ 747 (965)
+.+|..++....+|+..+.. ++ .+-.|-.|..++..+...|+.-...+.+-....+|..
T Consensus 113 ~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp 177 (201)
T PF13851_consen 113 EQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDP 177 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 34444444444444333322 11 2223444555555555555555555555555555443
No 144
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=96.22 E-value=0.21 Score=54.13 Aligned_cols=94 Identities=6% Similarity=0.054 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002108 632 CSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEG 711 (965)
Q Consensus 632 y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~ 711 (965)
.+.+..++..++....++++.+..++..++...+.|+..++++.+++.+|+.++...+...+.|.--+.++...|...-.
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555556666666666666777777777777777777777778888888777777777777766666666665221
Q ss_pred CCCCchHHHHHHHH
Q 002108 712 ESGDGTLQQHADHI 725 (965)
Q Consensus 712 ~~~n~~LKeri~~i 725 (965)
..---.+.+|.+++
T Consensus 120 ~d~Pf~~~eR~~Rl 133 (251)
T PF11932_consen 120 LDLPFLLEERQERL 133 (251)
T ss_pred cCCCCChHHHHHHH
Confidence 11112344455555
No 145
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=96.21 E-value=0.62 Score=50.56 Aligned_cols=73 Identities=21% Similarity=0.241 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 636 MQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 636 mQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
.+++..+..++..++..+++++..++++++.+|.++++...++....+.|.......+.....+.++...+..
T Consensus 58 ~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 130 (302)
T PF10186_consen 58 IQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEE 130 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555666666666666666666666655555555555553333344444444444444444
No 146
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.34 Score=59.58 Aligned_cols=107 Identities=22% Similarity=0.259 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002108 621 EILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKM 700 (965)
Q Consensus 621 ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ 700 (965)
+++.+..+.+.+.-+...|+.+...|......+..++..+...++.++++..+..+-...|+..+...++.|.|||.++.
T Consensus 511 ~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~ 590 (698)
T KOG0978|consen 511 QILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYA 590 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455555544455554544555555555555555556666777777777888999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Q 002108 701 ELYQAILKMEGESGDGTLQQHADHIQNELEELVKIL 736 (965)
Q Consensus 701 ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l 736 (965)
++...|.. ++.+..+++.|+..|.+.+
T Consensus 591 e~~~ele~---------~~~k~~rleEE~e~L~~kl 617 (698)
T KOG0978|consen 591 ELELELEI---------EKFKRKRLEEELERLKRKL 617 (698)
T ss_pred HHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 99999888 6666677777776666443
No 147
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.20 E-value=0.32 Score=54.39 Aligned_cols=118 Identities=18% Similarity=0.239 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002108 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 690 (965)
Q Consensus 611 a~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea 690 (965)
...++.++-.++..++.+...|+.+.++|..+.+.|.++|.++-.++..++.+...+-.++.+-.+.+.++...+.....
T Consensus 156 ~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~ 235 (294)
T COG1340 156 ENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQN 235 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44556666677777777777888888888888877777777776666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 002108 691 TFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNE 728 (965)
Q Consensus 691 ~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNse 728 (965)
.|++++..+..|........-......|++|+..|-..
T Consensus 236 elre~~k~ik~l~~~~~~~~~~~~~ee~kera~ei~EK 273 (294)
T COG1340 236 ELRELEKKIKALRAKEKAAKRREKREELKERAEEIYEK 273 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665555533222233555555555433
No 148
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.17 E-value=0.18 Score=59.23 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 684 KLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 684 qLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
.+...++++..++.++..|...+.+
T Consensus 318 ~l~~~~~~~~~l~~~~~~l~~~~~~ 342 (498)
T TIGR03007 318 ELAEAEAEIASLEARVAELTARIER 342 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555
No 149
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.16 E-value=0.15 Score=62.48 Aligned_cols=63 Identities=11% Similarity=0.057 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 002108 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEE 673 (965)
Q Consensus 611 a~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEe 673 (965)
.+.++.+.+.+|..++++...+..+.|.|+...+.++++|++.+.+|.+++.+++.|..++-.
T Consensus 97 lEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsA 159 (1265)
T KOG0976|consen 97 LEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSA 159 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 455677788888899999999999999999999999999999988888888877776555443
No 150
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=96.16 E-value=0.15 Score=57.73 Aligned_cols=121 Identities=12% Similarity=0.100 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002108 611 ADKKVEELEKEILTSREKIQFCSTKMQELI--LYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE 688 (965)
Q Consensus 611 a~kKl~eaE~ei~~~~eKi~~y~sKmQELq--~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~ 688 (965)
+++++.+++.++.+.++++..|+.+-..+. .......+.+.++..++.+++.++..|+..|.+.+=++..|+.+++.+
T Consensus 175 l~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l 254 (362)
T TIGR01010 175 AENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSL 254 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH
Confidence 444555555555555555555554433221 111122223444444444444444444444444344444444444444
Q ss_pred HHHHHHHHHHH--------HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 689 EATFRDIQEKK--------MELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRC 740 (965)
Q Consensus 689 Ea~LqDiQ~K~--------~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l~E~~ 740 (965)
+..+++...++ ..+..++. .|+.+.+-.+.-|+.+.+.+.|++
T Consensus 255 ~~~i~~e~~~i~~~~~~~l~~~~~~~~---------~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 255 RKQIDEQRNQLSGGLGDSLNEQTADYQ---------RLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333322 22222222 266666665666665554444433
No 151
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=96.14 E-value=0.011 Score=67.97 Aligned_cols=64 Identities=22% Similarity=0.454 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHcC--CCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHH
Q 002108 438 VQKYTKVFVQVDIDRDGKITGEQAYNLFLSW--RLPREVLKQVWDLSDQDNDGMLSLKEFCTALYL 501 (965)
Q Consensus 438 k~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks--~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~L 501 (965)
..++..+|..+|.++||.|...|+.+.|... +|..+++++|++.+|.++++.|+++||-..|.|
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLL 146 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhc
Confidence 4577889999999999999999999999654 688999999999999999999999999765544
No 152
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=96.14 E-value=0.16 Score=59.86 Aligned_cols=121 Identities=16% Similarity=0.239 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002108 611 ADKKVEELEKEILTSREKIQFCSTKMQ---E-LILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLT 686 (965)
Q Consensus 611 a~kKl~eaE~ei~~~~eKi~~y~sKmQ---E-Lq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa 686 (965)
.+.||+.++.++.-++.|...|+...= + =+...+-|.++|+.++.++..+..+|+.+-++.-..+-.+..|.++|+
T Consensus 164 L~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~ 243 (596)
T KOG4360|consen 164 LQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLV 243 (596)
T ss_pred HHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777666554311 1 111234577788888887777777777766666666666677777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 002108 687 LEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV 733 (965)
Q Consensus 687 ~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~ 733 (965)
++...++-+.-++++|-+=|+++.+. +..|..+.++.+.+|.+++
T Consensus 244 d~qkk~k~~~~Ekeel~~~Lq~~~da--~~ql~aE~~EleDkyAE~m 288 (596)
T KOG4360|consen 244 DLQKKIKYLRHEKEELDEHLQAYKDA--QRQLTAELEELEDKYAECM 288 (596)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHH
Confidence 88877777777788887777775522 2334444444444444333
No 153
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.13 E-value=0.29 Score=49.14 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=38.5
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 002108 650 LNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNEL 729 (965)
Q Consensus 650 L~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel 729 (965)
+..+++++++++|++..+..+.-...+++..++..+......++.+++.++.+..+... +|++-+.|+
T Consensus 75 ~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~------------e~rkke~E~ 142 (151)
T PF11559_consen 75 VERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEH------------ELRKKEREI 142 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
Confidence 33344444445555554444444444444454444444444555555555544444443 666666667
Q ss_pred HHHHHHH
Q 002108 730 EELVKIL 736 (965)
Q Consensus 730 ~eL~K~l 736 (965)
+.|++.+
T Consensus 143 ~kLk~rL 149 (151)
T PF11559_consen 143 EKLKERL 149 (151)
T ss_pred HHHHHHh
Confidence 7666554
No 154
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.13 E-value=0.078 Score=64.62 Aligned_cols=57 Identities=21% Similarity=0.328 Sum_probs=28.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 002108 674 KYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 732 (965)
Q Consensus 674 e~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL 732 (965)
.++|-.+|..+|+..+..|-.|.|.+.+|..+|+. -+..+..|+.++.+++.++..|
T Consensus 158 AlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~--Eq~~~keL~~kl~~l~~~l~~~ 214 (617)
T PF15070_consen 158 ALSQNRELKEQLAELQDAFVKLTNENMELTSALQS--EQHVKKELQKKLGELQEKLHNL 214 (617)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666665566666666555555555 2222233444444444444333
No 155
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.12 E-value=0.29 Score=60.88 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=33.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---------chHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 002108 679 GDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGD---------GTLQQHADHIQNELEELVKILNDRCKQYG 744 (965)
Q Consensus 679 ~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n---------~~LKeri~~iNsel~eL~K~l~E~~qq~G 744 (965)
..++.+|....+++.++..|++..+..+.+-+....+ ..+++-+.+...++++|.|..+.-.++.|
T Consensus 642 ~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~~ 716 (717)
T PF10168_consen 642 ERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKIVN 716 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3333444444455555555555444444331111111 34555555555667777777777666655
No 156
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.10 E-value=0.19 Score=60.76 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHH
Q 002108 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKK 670 (965)
Q Consensus 611 a~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~e 670 (965)
+..++..++.+|..+-..++....-.+.+.....++.+.|..+.++...++.++++|+..
T Consensus 280 ~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 280 AEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444455555555444444444444444444555555555555555555666666665555
No 157
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.0063 Score=67.97 Aligned_cols=63 Identities=22% Similarity=0.390 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhc--CCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Q 002108 9 SDLFEAYFRRADLDGDGQISGAEAVAFFQGS--NLPKQVLAQVWSHADQRKAGFLNRAEFFNALK 71 (965)
Q Consensus 9 ~~~Y~~vF~~lD~D~DGkISg~Ea~~ff~~S--gLp~~~LaqIW~LaD~d~DG~LdreEF~vAm~ 71 (965)
......+|.++|.++||.|+..|+..+++.+ ..-....++-|...|.|+||.|+.+||..++.
T Consensus 76 ~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~ 140 (325)
T KOG4223|consen 76 QERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTY 140 (325)
T ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhh
Confidence 4567789999999999999999999999877 35556677788889999999999999988765
No 158
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.08 E-value=0.28 Score=59.35 Aligned_cols=56 Identities=7% Similarity=0.086 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 002108 620 KEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY 675 (965)
Q Consensus 620 ~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~ 675 (965)
..+..+.++|+.+-..++.-...+..++..+..+...+..++.+.+.|..+++...
T Consensus 282 ~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~ 337 (569)
T PRK04778 282 EKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVK 337 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333333333333334444444444444444444444444444433
No 159
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=96.08 E-value=0.18 Score=54.72 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hCccc
Q 002108 718 LQQHADHIQNELEELVKILNDRCKQ-YGLRA 747 (965)
Q Consensus 718 LKeri~~iNsel~eL~K~l~E~~qq-~Gl~~ 747 (965)
.++.|.++..+|..|+-..++.|+. .||..
T Consensus 79 ~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~ 109 (230)
T PF10146_consen 79 RQEKIQRLYEEYKPLKDEINELRKEYLGLEP 109 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 5555666666777777777777777 77654
No 160
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.07 E-value=0.24 Score=65.31 Aligned_cols=7 Identities=43% Similarity=0.776 Sum_probs=4.3
Q ss_pred CCCCCcc
Q 002108 928 FDEPSWG 934 (965)
Q Consensus 928 ~de~~w~ 934 (965)
+|||+.+
T Consensus 1229 lDEPt~~ 1235 (1311)
T TIGR00606 1229 LDEPTTN 1235 (1311)
T ss_pred eeCCccc
Confidence 4666655
No 161
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.05 E-value=0.75 Score=52.94 Aligned_cols=94 Identities=11% Similarity=0.099 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHH---HHHHHHHHH-------HHHHHHhH
Q 002108 615 VEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELL---AKKYEEKYK-------QSGDVASK 684 (965)
Q Consensus 615 l~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsL---r~eyEee~K-------Qv~eLEsq 684 (965)
+..++++-++++..+..+..++++|+.++....++-+++.--.+.+|-++..| .+++|++-+ ++..++..
T Consensus 139 lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~e 218 (499)
T COG4372 139 LARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEE 218 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555555555556666666555555555542233333333333 333444433 33344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 685 LTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 685 La~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
|+-.++.+++.+.+++++-..+..
T Consensus 219 la~r~aa~Qq~~q~i~qrd~~i~q 242 (499)
T COG4372 219 LARRAAAAQQTAQAIQQRDAQISQ 242 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665555544
No 162
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.05 E-value=0.4 Score=60.22 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=21.9
Q ss_pred hhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002108 646 CDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE 689 (965)
Q Consensus 646 aeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~E 689 (965)
+.+.|+++..+|.+.++++....-+|...+..-+.+..+|+.++
T Consensus 326 ~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~ 369 (1200)
T KOG0964|consen 326 ALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLE 369 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHH
Confidence 44445555555555555555555555554433333333344333
No 163
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.03 E-value=0.63 Score=49.48 Aligned_cols=66 Identities=23% Similarity=0.350 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 002108 615 VEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK 684 (965)
Q Consensus 615 l~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsq 684 (965)
|..++.++.+++.++..|.+-.+.|...+. ++..+.+++..++.+.+-|..+|+...+...+|..+
T Consensus 64 L~~a~~e~~eL~k~L~~y~kdK~~L~~~k~----rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 64 LKKAEEEVEELRKQLKNYEKDKQSLQNLKA----RLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555544444444333 334555555556666666665555555555555544
No 164
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.02 E-value=0.31 Score=55.17 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=27.3
Q ss_pred CCchHHHHHHHHHHHHHHHH------HHHHHHHHhhCcc
Q 002108 714 GDGTLQQHADHIQNELEELV------KILNDRCKQYGLR 746 (965)
Q Consensus 714 ~n~~LKeri~~iNsel~eL~------K~l~E~~qq~Gl~ 746 (965)
||..||+||.+++.|..-++ |...|+++.+|++
T Consensus 197 ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~k~~~~~~ 235 (319)
T PF09789_consen 197 ENRYLKERLKQLQEEKELLKQTINKYKSALERKRKKGII 235 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 57899999999999998777 8888977667655
No 165
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=95.96 E-value=0.0092 Score=44.51 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=20.4
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHh
Q 002108 12 FEAYFRRADLDGDGQISGAEAVAFFQG 38 (965)
Q Consensus 12 Y~~vF~~lD~D~DGkISg~Ea~~ff~~ 38 (965)
|+.+|+.+|.|+||+|+..|++.+|.+
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 677788888888888888888888773
No 166
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=95.96 E-value=0.01 Score=60.03 Aligned_cols=61 Identities=28% Similarity=0.302 Sum_probs=50.1
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHH---cCCCCHHHH----HHHHHHhcCCCCCccCHHHHHHHHHHHHH
Q 002108 441 YTKVFVQVDIDRDGKITGEQAYNLFL---SWRLPREVL----KQVWDLSDQDNDGMLSLKEFCTALYLMER 504 (965)
Q Consensus 441 y~~~F~~lDkD~dG~ISg~Elr~~f~---ks~Lp~eeL----~~IW~LaD~D~DGkLs~dEFvvAM~LI~~ 504 (965)
..-+|+.+|-|+|++|-.++|...+. +..|+.+++ .+|++++|.|+||+|++.||- |+|-+
T Consensus 110 ~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe---~~i~r 177 (189)
T KOG0038|consen 110 AKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFE---HVILR 177 (189)
T ss_pred hhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHH---HHHHh
Confidence 33468899999999999999988884 468987765 567789999999999999998 55543
No 167
>PRK11519 tyrosine kinase; Provisional
Probab=95.95 E-value=0.23 Score=61.64 Aligned_cols=131 Identities=9% Similarity=0.039 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002108 611 ADKKVEELEKEILTSREKIQFCSTKMQE--LILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE 688 (965)
Q Consensus 611 a~kKl~eaE~ei~~~~eKi~~y~sKmQE--Lq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~ 688 (965)
+++++.+++.++.+..++++.|+.+-.. +.......-+.+.+++.++.+++.++..|+..|-.+.=++.+|..+++.+
T Consensus 272 L~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~l~~~~~~L 351 (719)
T PRK11519 272 LAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLLEKRKAL 351 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHH
Confidence 4444555555555555555544443221 11222222223444445555555555555555555555555555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Q 002108 689 EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQYGLRA 747 (965)
Q Consensus 689 Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l~E~~qq~Gl~~ 747 (965)
+.++.+++.++.++-....+ -..|+.+.+-.+.-|..|.+.+.|.+-...+..
T Consensus 352 ~~~~~~l~~~~~~lp~~e~~------~~~L~Re~~~~~~lY~~lL~r~~e~~i~~a~~~ 404 (719)
T PRK11519 352 EDEKAKLNGRVTAMPKTQQE------IVRLTRDVESGQQVYMQLLNKQQELKITEASTV 404 (719)
T ss_pred HHHHHHHHHHHHhccHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCC
Confidence 44444444443333222221 223556666666666677766777666655443
No 168
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.93 E-value=0.16 Score=60.78 Aligned_cols=81 Identities=17% Similarity=0.230 Sum_probs=53.2
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 002108 600 SLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSG 679 (965)
Q Consensus 600 ~Lns~~qeaeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~ 679 (965)
.|..++++.+....+..-++.....++..+.-|+.=|.++..++..-.+.|+.++.+|.+-.-|+++|+++.++=.++|.
T Consensus 246 ~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 246 ELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444455555556667777777777777777777777777777777777777777777766666555554
Q ss_pred H
Q 002108 680 D 680 (965)
Q Consensus 680 e 680 (965)
.
T Consensus 326 ~ 326 (581)
T KOG0995|consen 326 L 326 (581)
T ss_pred h
Confidence 3
No 169
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.91 E-value=0.36 Score=52.70 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002108 718 LQQHADHIQNELEELVKILNDRC 740 (965)
Q Consensus 718 LKeri~~iNsel~eL~K~l~E~~ 740 (965)
|+.++.+++.+|..|..+++|+.
T Consensus 183 i~~~L~~~~~kL~Dl~~~l~eA~ 205 (264)
T PF06008_consen 183 IRDDLNDYNAKLQDLRDLLNEAQ 205 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777777778877777654
No 170
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.90 E-value=0.3 Score=58.59 Aligned_cols=71 Identities=21% Similarity=0.203 Sum_probs=41.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 002108 605 LKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY 675 (965)
Q Consensus 605 ~qeaeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~ 675 (965)
..+.+++...|..+..++..++..++.|+..+........+..+++......+..|+.++..++.+++...
T Consensus 287 ~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~ 357 (522)
T PF05701_consen 287 KKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK 357 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence 33444455555555566666666666666666666666666665555555566666666666665554443
No 171
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.89 E-value=0.23 Score=48.95 Aligned_cols=89 Identities=18% Similarity=0.245 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002108 612 DKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDN---RLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE 688 (965)
Q Consensus 612 ~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeq---eL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~ 688 (965)
+..+...+.|+..++.++..+.....++.....+.-. +++....++..++++++.|+.+|+.-+..+.+-.+.+..+
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL 101 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEEL 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3445566666666666655554444433333322222 2233344555555556666666655555555555555555
Q ss_pred HHHHHHHHHHHH
Q 002108 689 EATFRDIQEKKM 700 (965)
Q Consensus 689 Ea~LqDiQ~K~~ 700 (965)
++.+.|+..-+.
T Consensus 102 ~~Dv~DlK~myr 113 (120)
T PF12325_consen 102 RADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHH
Confidence 555555544433
No 172
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=95.89 E-value=0.22 Score=61.86 Aligned_cols=130 Identities=8% Similarity=0.068 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002108 611 ADKKVEELEKEILTSREKIQFCSTKMQE--LILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE 688 (965)
Q Consensus 611 a~kKl~eaE~ei~~~~eKi~~y~sKmQE--Lq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~ 688 (965)
+++++.+++.++.+..++++.|+++-.- +.......-+++.+++.++..++.....|...|....=.+.+|+.+++.+
T Consensus 272 L~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L 351 (726)
T PRK09841 272 LQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEKRQTL 351 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 4445555555555555555555544211 11111111122333334444444444444444444444444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Q 002108 689 EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQYGLR 746 (965)
Q Consensus 689 Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l~E~~qq~Gl~ 746 (965)
+.++.+++.++.++-... .+-..|+.+.+..+.-|..|.+.+.|..-+..+.
T Consensus 352 ~~~~~~l~~~~~~~p~~e------~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a~~ 403 (726)
T PRK09841 352 EQERKRLNKRVSAMPSTQ------QEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSA 403 (726)
T ss_pred HHHHHHHHHHHHhccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 333333333322221111 1122255555555555556666666665555544
No 173
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.88 E-value=0.49 Score=56.88 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=31.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 651 NEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 651 ~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
-++..+|..++.++..|+.+|++..|.+....+++-+.+..+.++++++.-+...+..
T Consensus 109 a~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~ 166 (546)
T KOG0977|consen 109 AKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKA 166 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 3444455566666666777777666666555555444444444444444444333333
No 174
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=95.87 E-value=0.16 Score=56.01 Aligned_cols=77 Identities=19% Similarity=0.309 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002108 624 TSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELY 703 (965)
Q Consensus 624 ~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe 703 (965)
+..=+++||++++.|+...+...+ .......++...+|.++..+.+++.....++. .|..+++++.++.+..
T Consensus 163 sa~vkV~WLR~~L~Ei~Ea~e~~~-~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~-------~Eke~~e~~~~i~e~~ 234 (269)
T PF05278_consen 163 SAKVKVDWLRSKLEEILEAKEIYD-QHETREEEKEEKDRKLELKKEELEELEEELKQ-------KEKEVKEIKERITEMK 234 (269)
T ss_pred HcCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 344567899999999877655443 23344455666777777777666655544444 4445555555555555
Q ss_pred HHHHH
Q 002108 704 QAILK 708 (965)
Q Consensus 704 ~AL~~ 708 (965)
+.|..
T Consensus 235 ~rl~~ 239 (269)
T PF05278_consen 235 GRLGE 239 (269)
T ss_pred HHHHH
Confidence 44444
No 175
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=95.85 E-value=0.85 Score=48.35 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=38.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 653 ITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 707 (965)
Q Consensus 653 l~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~ 707 (965)
.-.++..+...++.|+..|++...++..|..+|...+..+.+++.|+..|.....
T Consensus 89 al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 89 ALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777777777777777777777777777766655443
No 176
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.85 E-value=0.48 Score=54.84 Aligned_cols=15 Identities=33% Similarity=0.286 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhcCCC
Q 002108 472 REVLKQVWDLSDQDN 486 (965)
Q Consensus 472 ~eeL~~IW~LaD~D~ 486 (965)
...+..|++..+...
T Consensus 79 ~~v~~~Vi~~l~l~~ 93 (444)
T TIGR03017 79 DRVAKKVVDKLKLDE 93 (444)
T ss_pred HHHHHHHHHHcCCCC
Confidence 445556666555543
No 177
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=95.82 E-value=0.01 Score=42.92 Aligned_cols=25 Identities=40% Similarity=0.498 Sum_probs=18.0
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHH
Q 002108 441 YTKVFVQVDIDRDGKITGEQAYNLF 465 (965)
Q Consensus 441 y~~~F~~lDkD~dG~ISg~Elr~~f 465 (965)
++++|..+|.|+||+|+.+|++.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3567777777777887777777653
No 178
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.82 E-value=0.015 Score=68.97 Aligned_cols=87 Identities=18% Similarity=0.307 Sum_probs=74.2
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcC--CCCHHHHHHHHHHhcCCCCCccCHH
Q 002108 416 IGALNSTSSQSHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSW--RLPREVLKQVWDLSDQDNDGMLSLK 493 (965)
Q Consensus 416 ~g~~~~~~~~~~~~Wp~IS~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks--~Lp~eeL~~IW~LaD~D~DGkLs~d 493 (965)
||+.-....+..++. .+++++..+|+..|..+|.|+.|+++.++++.+|... +.+++.+.++..++|.+.+|++...
T Consensus 571 mg~~~~~~~~~~~~i-~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~ 649 (680)
T KOG0042|consen 571 MGLSKESTSQMSIPI-KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELR 649 (680)
T ss_pred hhhhhhhcccccccc-ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHH
Confidence 454444455567778 7999999999999999999999999999999999653 6899999999999999999999999
Q ss_pred HHHHHHHHHH
Q 002108 494 EFCTALYLME 503 (965)
Q Consensus 494 EFvvAM~LI~ 503 (965)
||...|.-+.
T Consensus 650 e~~q~~s~~~ 659 (680)
T KOG0042|consen 650 EFLQLMSAIK 659 (680)
T ss_pred HHHHHHHHHh
Confidence 9986555443
No 179
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.81 E-value=0.097 Score=60.88 Aligned_cols=73 Identities=18% Similarity=0.263 Sum_probs=39.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Q 002108 655 ERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVK 734 (965)
Q Consensus 655 eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K 734 (965)
+++...+++|+.+++++....++.+.|+.+|...|..+.+|..++.+....|.+ ++.+|+.++..+..|+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~---------~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKK---------LRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------HHhhHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555555 55566666655555554
Q ss_pred HH
Q 002108 735 IL 736 (965)
Q Consensus 735 ~l 736 (965)
..
T Consensus 109 q~ 110 (420)
T COG4942 109 QE 110 (420)
T ss_pred HH
Confidence 43
No 180
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.81 E-value=0.75 Score=57.46 Aligned_cols=112 Identities=17% Similarity=0.283 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH--HHHhhhhHHHHH-----HHHHHHHHHHHHHHHHHhHHHHHHH----
Q 002108 622 ILTSREKIQFCSTKMQELILYKSRCDNRLNEI--TERVSGDKREVE-----LLAKKYEEKYKQSGDVASKLTLEEA---- 690 (965)
Q Consensus 622 i~~~~eKi~~y~sKmQELq~~ksraeqeL~el--~eeisalKRevq-----sLr~eyEee~KQv~eLEsqLa~~Ea---- 690 (965)
++++++++...+....+++..+.+...+|.++ ..++..+.+|+. +|+.+++.-.-.+.+|+-.|.++.+
T Consensus 278 qa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 278 QADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666666777777777777777766 334444444443 3666676666777777777665542
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHhcCCC-----CchHHHHHHHHHHHHHHHH
Q 002108 691 -----------TFRDIQEKKMELYQAILKMEGESG-----DGTLQQHADHIQNELEELV 733 (965)
Q Consensus 691 -----------~LqDiQ~K~~ELe~AL~~~~~~~~-----n~~LKeri~~iNsel~eL~ 733 (965)
+|++|..+-.-|..+|+.|.|-++ ...|..+++..++|+.+|+
T Consensus 358 kG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~ 416 (1243)
T KOG0971|consen 358 KGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELR 416 (1243)
T ss_pred cCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 388999998899999999774442 2445666777777777776
No 181
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.77 E-value=0.37 Score=63.07 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 002108 722 ADHIQNELEELV 733 (965)
Q Consensus 722 i~~iNsel~eL~ 733 (965)
|..+..++.+|.
T Consensus 773 I~~l~~~i~~L~ 784 (1201)
T PF12128_consen 773 IQQLKQEIEQLE 784 (1201)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 182
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=95.75 E-value=0.079 Score=56.00 Aligned_cols=30 Identities=13% Similarity=0.365 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 002108 493 KEFCTALYLMERYREGRPLPTMLPSTIMPD 522 (965)
Q Consensus 493 dEFvvAM~LI~~~~~G~~LP~~LPp~L~pp 522 (965)
+..++++|++.++-.|..||..||++|-..
T Consensus 3 D~~L~FLHiLnqR~~G~rIPr~vPasLras 32 (195)
T PF12761_consen 3 DQCLYFLHILNQRNDGYRIPREVPASLRAS 32 (195)
T ss_pred cchhhHHHHHhccccCCcCCccCCHHHHHH
Confidence 455678899999999999999999998433
No 183
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.73 E-value=0.3 Score=61.39 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=36.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 002108 681 VASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV 733 (965)
Q Consensus 681 LEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~ 733 (965)
+.+++..++..-+-|++.+.-|+++|+.+..+++..+|-.+|=+++++++.|.
T Consensus 262 ykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~ 314 (1195)
T KOG4643|consen 262 YKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMR 314 (1195)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHH
Confidence 44455666666777888888888888888866665666666666665555444
No 184
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.71 E-value=0.53 Score=59.37 Aligned_cols=74 Identities=23% Similarity=0.221 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 635 KMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 635 KmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
...+|+.....++..|..+..+++.++.++..|+.++....+.+..+++.|.+..+.+.++-.++..+.....+
T Consensus 823 E~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~ 896 (1174)
T KOG0933|consen 823 EHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEK 896 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHH
Confidence 34455556666666777777777777777777777777777777777777777777777777776655555555
No 185
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.69 E-value=0.49 Score=63.15 Aligned_cols=17 Identities=24% Similarity=0.385 Sum_probs=7.9
Q ss_pred HHHHHHHHHH--HHHHHhh
Q 002108 727 NELEELVKIL--NDRCKQY 743 (965)
Q Consensus 727 sel~eL~K~l--~E~~qq~ 743 (965)
+++++|.+.+ .+.|++.
T Consensus 1402 rk~e~~~~k~~~~~e~~sl 1420 (1822)
T KOG4674|consen 1402 RKLEKLKEKLELSEELESL 1420 (1822)
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 4444454333 3555554
No 186
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.68 E-value=0.021 Score=73.11 Aligned_cols=68 Identities=21% Similarity=0.507 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcC--CCC-------HHHHHHHHHHhcCCCCCccCHHHHHHHH
Q 002108 432 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSW--RLP-------REVLKQVWDLSDQDNDGMLSLKEFCTAL 499 (965)
Q Consensus 432 ~IS~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks--~Lp-------~eeL~~IW~LaD~D~DGkLs~dEFvvAM 499 (965)
-+|++...+|.-+|+.||++++|+++-.+++.+|+.. .|| ..++..|++++|.+.+|.|++.+|+.+|
T Consensus 2246 GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred CCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 3789999999999999999999999999999999764 343 3489999999999999999999998655
No 187
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=95.66 E-value=0.0037 Score=60.42 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCccCHHHHHH
Q 002108 437 EVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCT 497 (965)
Q Consensus 437 Ek~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks~Lp~eeL~~IW~LaD~D~DGkLs~dEFvv 497 (965)
.+.-+.=.|..+|.|+||+|+..|++.+.......+.=+..+++.+|.|+|+.|++.|++.
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3455566799999999999999999998765555566688999999999999999999973
No 188
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.64 E-value=0.31 Score=61.20 Aligned_cols=84 Identities=19% Similarity=0.221 Sum_probs=69.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002108 607 EATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLT 686 (965)
Q Consensus 607 eaeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa 686 (965)
+..+++++|.++.++|-+.-+||+.+...||.++.....|..+...++.++...+.+...+...++-..+++..+...|.
T Consensus 679 ~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~ 758 (1200)
T KOG0964|consen 679 ELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLH 758 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44457778888889998888999999999999999999999999999999999999988888888888877777766554
Q ss_pred HHHH
Q 002108 687 LEEA 690 (965)
Q Consensus 687 ~~Ea 690 (965)
..+.
T Consensus 759 ~~~~ 762 (1200)
T KOG0964|consen 759 KLES 762 (1200)
T ss_pred HHHH
Confidence 4443
No 189
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=95.63 E-value=0.0053 Score=59.34 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCcCHHHHHH
Q 002108 9 SDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFN 68 (965)
Q Consensus 9 ~~~Y~~vF~~lD~D~DGkISg~Ea~~ff~~SgLp~~~LaqIW~LaD~d~DG~LdreEF~v 68 (965)
.....=.|..+|.|+||.|+..|++.+...-.-++.-+...++.+|.|+||.|++.|+..
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 344455699999999999999999998876656666689999999999999999999975
No 190
>PRK10698 phage shock protein PspA; Provisional
Probab=95.63 E-value=1.8 Score=46.76 Aligned_cols=34 Identities=9% Similarity=0.081 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 002108 691 TFRDIQEKKMELYQAILKMEGESGDGTLQQHADHI 725 (965)
Q Consensus 691 ~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~i 725 (965)
.|..+..|+.++++.-..+... ....|..++..+
T Consensus 167 ~f~rmE~ki~~~Ea~aea~~~~-~~~~l~~e~~~l 200 (222)
T PRK10698 167 RFESFERRIDQMEAEAESHGFG-KQKSLDQQFAEL 200 (222)
T ss_pred HHHHHHHHHHHHHHHHhHhhcc-CCCCHHHHHHHh
Confidence 3566777777777766665411 224566666653
No 191
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.62 E-value=0.89 Score=48.23 Aligned_cols=118 Identities=16% Similarity=0.258 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002108 622 ILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEE-KYKQSGDVASKLTLEEATFRDIQEKKM 700 (965)
Q Consensus 622 i~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEe-e~KQv~eLEsqLa~~Ea~LqDiQ~K~~ 700 (965)
|....+.+-.|+.++...+......+..|++..+++-..+.+++.|++-.++ .+....+|+.+|..++..+.+...++.
T Consensus 63 l~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~ 142 (194)
T PF15619_consen 63 LQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQ 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566667777777777777777888888888888888888777665543 244556666777777766666666666
Q ss_pred HHHHHHHHHh---------cCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 002108 701 ELYQAILKME---------GESGDGTLQQHADHIQNELEELVKILNDR 739 (965)
Q Consensus 701 ELe~AL~~~~---------~~~~n~~LKeri~~iNsel~eL~K~l~E~ 739 (965)
.|+..|.-.. -..-...++.++..++.++..|...+-|+
T Consensus 143 ~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 143 ELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555411 11112334445555555555555544444
No 192
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.57 E-value=0.72 Score=60.96 Aligned_cols=20 Identities=5% Similarity=0.210 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002108 689 EATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 689 Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
+.++.+++.++..+...|.+
T Consensus 983 ~~~ie~le~e~~~l~~~i~~ 1002 (1311)
T TIGR00606 983 NAQLEECEKHQEKINEDMRL 1002 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 193
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=95.56 E-value=0.014 Score=42.17 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=15.8
Q ss_pred HHHHHhhCCCCCCcccHHHHHHH
Q 002108 13 EAYFRRADLDGDGQISGAEAVAF 35 (965)
Q Consensus 13 ~~vF~~lD~D~DGkISg~Ea~~f 35 (965)
+.+|..+|.|+||+|+..|+++|
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45677777777777777777665
No 194
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=95.53 E-value=1.6 Score=44.55 Aligned_cols=73 Identities=21% Similarity=0.233 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH-HHHHH
Q 002108 660 DKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV-KILND 738 (965)
Q Consensus 660 lKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~-K~l~E 738 (965)
.+++|+.+|++||..-++++-|-..+.-.|..|+++++.++|....=.. |=.++..+-.+-..|. |.|.|
T Consensus 82 ~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~---------Lv~~L~eLv~eSE~~rmKKLEE 152 (159)
T PF04949_consen 82 MRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQ---------LVTRLMELVSESERLRMKKLEE 152 (159)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888888877777777777777666665544444 5556666666666555 55555
Q ss_pred HHH
Q 002108 739 RCK 741 (965)
Q Consensus 739 ~~q 741 (965)
-.+
T Consensus 153 Lsk 155 (159)
T PF04949_consen 153 LSK 155 (159)
T ss_pred HHh
Confidence 443
No 195
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.52 E-value=1.3 Score=46.95 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002108 623 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMEL 702 (965)
Q Consensus 623 ~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~EL 702 (965)
+.+.+.+.-++.+|+-++.-...+ +.+++++..+|-.+..|..++..=++|.+.++..---..+.+..+|++...|
T Consensus 39 a~L~~e~~~L~~q~~s~Qqal~~a----K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl 114 (193)
T PF14662_consen 39 AQLAEEITDLRKQLKSLQQALQKA----KALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL 114 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334444455555555554332222 4445556666666666666666666666666655555556666666666666
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 002108 703 YQAILKMEGESGDGTLQQHADHIQNELEELV 733 (965)
Q Consensus 703 e~AL~~~~~~~~n~~LKeri~~iNsel~eL~ 733 (965)
...... ||.++.+++.+...|+
T Consensus 115 ~~e~~~---------lk~~~~eL~~~~~~Lq 136 (193)
T PF14662_consen 115 LAERDG---------LKKRSKELATEKATLQ 136 (193)
T ss_pred HHhhhh---------HHHHHHHHHHhhHHHH
Confidence 555555 5555555544444333
No 196
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.51 E-value=1.3 Score=45.61 Aligned_cols=89 Identities=20% Similarity=0.263 Sum_probs=60.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 002108 654 TERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV 733 (965)
Q Consensus 654 ~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~ 733 (965)
.++|.+-+.++.+|+..|-..+..+.-+.++|......+..++.++.+....+.+ +++++..+..+.+.|.
T Consensus 55 ~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~---------~r~~l~~~k~~r~k~~ 125 (177)
T PF13870_consen 55 NEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAK---------LREELYRVKKERDKLR 125 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
Confidence 3444455566666666666666666666666666666677777777777777777 7777777777777777
Q ss_pred HHHHHHHHhhCccccccc
Q 002108 734 KILNDRCKQYGLRAKPTL 751 (965)
Q Consensus 734 K~l~E~~qq~Gl~~K~~~ 751 (965)
+...+-+++.|+...|..
T Consensus 126 ~~~~~l~~~~~~~~~P~l 143 (177)
T PF13870_consen 126 KQNKKLRQQGGLLGVPAL 143 (177)
T ss_pred HHHHHHHHhcCCCCCcHH
Confidence 777777777777665543
No 197
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=95.50 E-value=0.19 Score=51.47 Aligned_cols=93 Identities=18% Similarity=0.251 Sum_probs=62.8
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 002108 648 NRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE--ATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHI 725 (965)
Q Consensus 648 qeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~E--a~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~i 725 (965)
.+|.+++.+|..++.++..|+.++..-..+++.|.+.+...| ..+..++.++.+|+..|..+..+...-+ .+++..+
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs-~ee~~~~ 150 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVS-PEEKEKL 150 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-HHHHHHH
Confidence 346666666666666666666666666666666666654444 4577888888888888888774333333 5677788
Q ss_pred HHHHHHHHHHHHHHHH
Q 002108 726 QNELEELVKILNDRCK 741 (965)
Q Consensus 726 Nsel~eL~K~l~E~~q 741 (965)
..++..+.|....|++
T Consensus 151 ~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 151 EKEYKKWRKEWKKRKR 166 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888877776666654
No 198
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.48 E-value=0.27 Score=60.17 Aligned_cols=143 Identities=20% Similarity=0.257 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHH-------HHHHHHHHHHHHHH
Q 002108 608 ATEADKKVEELEKEILT-SREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVE-------LLAKKYEEKYKQSG 679 (965)
Q Consensus 608 aeEa~kKl~eaE~ei~~-~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevq-------sLr~eyEee~KQv~ 679 (965)
+++.++.+.+++.++.+ ...+++.....++.|......|+.+|+.+..++-....-.. .|...|+.....+.
T Consensus 34 ~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le 113 (660)
T KOG4302|consen 34 ETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLE 113 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHH
Confidence 33445555555555432 23445555555555555666666555555443332211111 24444444444444
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCCchHHHHHHHHHHHHHH--------------HHHHHHH
Q 002108 680 DVASKLTLEEATFRDIQEKKMELYQAILKME-------GESGDGTLQQHADHIQNELEE--------------LVKILND 738 (965)
Q Consensus 680 eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~-------~~~~n~~LKeri~~iNsel~e--------------L~K~l~E 738 (965)
.|..+....-++|.+++.|++.|-..|-.-. ....|-+ -+++++++.+|.+ ++..+..
T Consensus 114 ~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dls-l~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~ 192 (660)
T KOG4302|consen 114 GLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLS-LEKLEELREHLNELQKEKSDRLEKVLELKEEIKS 192 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555555555544310 0001111 1344444444444 4455667
Q ss_pred HHHhhCccccccc
Q 002108 739 RCKQYGLRAKPTL 751 (965)
Q Consensus 739 ~~qq~Gl~~K~~~ 751 (965)
-|..+|+.+..++
T Consensus 193 l~~~Lg~~~~~~v 205 (660)
T KOG4302|consen 193 LCSVLGLDFSMTV 205 (660)
T ss_pred HHHHhCCCcccch
Confidence 7888898886443
No 199
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.47 E-value=0.13 Score=53.95 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHH
Q 002108 631 FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK-------LTLEEATFRDIQEKKMELY 703 (965)
Q Consensus 631 ~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsq-------La~~Ea~LqDiQ~K~~ELe 703 (965)
.+..+++++.........+|.++..++..++.++..|..++.+.-|.+..|... +.++|..++.++..-.+|-
T Consensus 99 ~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 99 ELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444444444444444444444444433 4444444444444444444
Q ss_pred HHHHH
Q 002108 704 QAILK 708 (965)
Q Consensus 704 ~AL~~ 708 (965)
..+.+
T Consensus 179 ~Rwm~ 183 (194)
T PF08614_consen 179 ERWMQ 183 (194)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 200
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.47 E-value=0.41 Score=60.28 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=63.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHH-----------
Q 002108 607 EATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY----------- 675 (965)
Q Consensus 607 eaeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~----------- 675 (965)
+|++.-.|.-+++++-.+++-|++-+..++.++..++..|++.-+.+..+..++..++..++.-|+.+.
T Consensus 395 s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls 474 (1195)
T KOG4643|consen 395 SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLS 474 (1195)
T ss_pred hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence 355544555566666677777888888888888888888888777777777777766665544444442
Q ss_pred -------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 676 -------------KQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 676 -------------KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
.+++.|...|......+..+++++++|..++++
T Consensus 475 ~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt 520 (1195)
T KOG4643|consen 475 LQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKT 520 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333333334455556666666666665
No 201
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=95.46 E-value=0.43 Score=51.83 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002108 624 TSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELY 703 (965)
Q Consensus 624 ~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe 703 (965)
+...-|.-|++.|.+|...+.++.++|+.+.+ ++..||.-|..++.....+++.+..++
T Consensus 29 ~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~---------------------DIn~lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 29 NEEKCLEEYRKEMEELLQERMAHVEELRQINQ---------------------DINTLENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555555555555444444443 333333334444444455555555555
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHH
Q 002108 704 QAILKMEGESGDGTLQQHADHIQNE 728 (965)
Q Consensus 704 ~AL~~~~~~~~n~~LKeri~~iNse 728 (965)
+.+.. ||.+|+++..+
T Consensus 88 eey~~---------Lk~~in~~R~e 103 (230)
T PF10146_consen 88 EEYKP---------LKDEINELRKE 103 (230)
T ss_pred HHHHH---------HHHHHHHHHHH
Confidence 55555 66666666555
No 202
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.45 E-value=0.81 Score=56.12 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=21.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHH
Q 002108 656 RVSGDKREVELLAKKYEEKYKQSGD-------VASKLTLEEATFRDIQEKKMELY 703 (965)
Q Consensus 656 eisalKRevqsLr~eyEee~KQv~e-------LEsqLa~~Ea~LqDiQ~K~~ELe 703 (965)
++..++.+++.|..+|+.+++.... .+.+|...|.++++++.+..+..
T Consensus 88 E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~ 142 (617)
T PF15070_consen 88 EAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQ 142 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444333222 22334444444444444443333
No 203
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.43 E-value=0.42 Score=58.24 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002108 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRC 646 (965)
Q Consensus 611 a~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksra 646 (965)
++++++++..+|..+...++.++..+.++.....+.
T Consensus 333 l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~ 368 (594)
T PF05667_consen 333 LQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEK 368 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433333333
No 204
>PRK11281 hypothetical protein; Provisional
Probab=95.43 E-value=0.17 Score=65.40 Aligned_cols=90 Identities=13% Similarity=0.097 Sum_probs=40.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH-HHHHHHHHHHHHHH
Q 002108 655 ERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQ-QHADHIQNELEELV 733 (965)
Q Consensus 655 eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LK-eri~~iNsel~eL~ 733 (965)
.++++...+++.++..+.+.-+++..++.+.+-+.+++.+.+.+++|+..+|.. +......|. .+...++.|+..|+
T Consensus 128 q~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~--~~~~~~~l~~~~~~~l~ae~~~l~ 205 (1113)
T PRK11281 128 SRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG--GKVGGKALRPSQRVLLQAEQALLN 205 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhC--CCCCCCcCCHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444555555555555555544 222222233 24555556655444
Q ss_pred HHHHHHHHhhCccc
Q 002108 734 KILNDRCKQYGLRA 747 (965)
Q Consensus 734 K~l~E~~qq~Gl~~ 747 (965)
+.++..++--..+
T Consensus 206 -~~~~~~~~~l~~~ 218 (1113)
T PRK11281 206 -AQNDLQRKSLEGN 218 (1113)
T ss_pred -HHHHHHHHHHhcc
Confidence 3355555544433
No 205
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.43 E-value=0.91 Score=56.73 Aligned_cols=90 Identities=14% Similarity=0.248 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002108 621 EILTSREKIQFCSTKMQELILYKSRCDNRL----------NEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 690 (965)
Q Consensus 621 ei~~~~eKi~~y~sKmQELq~~ksraeqeL----------~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea 690 (965)
+.++.+++.+.++..+.++...+..+++.. .....|.+++|..+..|+.++.+-+.+.+.++.++.+++.
T Consensus 380 ~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~ 459 (980)
T KOG0980|consen 380 EAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQ 459 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555555555544444433 2334455555556666666666667777888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 002108 691 TFRDIQEKKMELYQAILKME 710 (965)
Q Consensus 691 ~LqDiQ~K~~ELe~AL~~~~ 710 (965)
..-++.+++.+|...|.++.
T Consensus 460 s~~~~~~~~~~L~d~le~~~ 479 (980)
T KOG0980|consen 460 SIDDVEEENTNLNDQLEELQ 479 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888833
No 206
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=95.42 E-value=1.3 Score=54.42 Aligned_cols=90 Identities=20% Similarity=0.210 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHHhH----HH
Q 002108 619 EKEILTSREKIQFCS-------TKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYK-QSGDVASK----LT 686 (965)
Q Consensus 619 E~ei~~~~eKi~~y~-------sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~K-Qv~eLEsq----La 686 (965)
+.++.+++++...++ ..+.++..+...+.+.+.+.+++...+++++..-+..|+..+. .|++|+++ |+
T Consensus 513 eaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~ 592 (739)
T PF07111_consen 513 EAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLS 592 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554444444 3444455555556666677777778888888888888887764 66777755 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002108 687 LEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 687 ~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
+.|.+|+.++-++..-.-+|-.
T Consensus 593 ~~E~rLNeARREHtKaVVsLRQ 614 (739)
T PF07111_consen 593 EMEKRLNEARREHTKAVVSLRQ 614 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888877777665555555
No 207
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.41 E-value=0.17 Score=53.94 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 002108 613 KKVEELEKEILTSREK 628 (965)
Q Consensus 613 kKl~eaE~ei~~~~eK 628 (965)
.++.++++++.+++++
T Consensus 93 ~rlp~le~el~~l~~~ 108 (206)
T PRK10884 93 TRVPDLENQVKTLTDK 108 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 208
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.40 E-value=1.1 Score=59.51 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=12.9
Q ss_pred CccCHHHHHHHHHHHHHHh
Q 002108 488 GMLSLKEFCTALYLMERYR 506 (965)
Q Consensus 488 GkLs~dEFvvAM~LI~~~~ 506 (965)
|.++.+.|...|+++.+.+
T Consensus 175 G~~~~~ry~~l~~~l~~lr 193 (1353)
T TIGR02680 175 GFLGEERYAALLDLLIQLR 193 (1353)
T ss_pred CCCChHHHHHHHHHHHHHc
Confidence 6666788887777665544
No 209
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.35 E-value=0.19 Score=62.36 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=9.0
Q ss_pred ceeccCCcCCCCCCCCcccCC
Q 002108 316 LVVSGNGFSSDSLFGDVFSAS 336 (965)
Q Consensus 316 ~~~~g~g~~s~~~~~d~f~a~ 336 (965)
+++-||| |+|-..
T Consensus 244 ~vL~~ng--------~v~~~~ 256 (717)
T PF10168_consen 244 FVLRENG--------DVYLLY 256 (717)
T ss_pred EEEecCC--------CEEEEE
Confidence 4777998 776644
No 210
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.31 E-value=0.67 Score=57.58 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=54.3
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------------HHHHHHHHHHHHHHHHHHh-cCC
Q 002108 650 LNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEAT---------------FRDIQEKKMELYQAILKME-GES 713 (965)
Q Consensus 650 L~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~---------------LqDiQ~K~~ELe~AL~~~~-~~~ 713 (965)
+.++..++.++++++..|+.+|-+.+-++.+++.+|+.++.. +..++.+...|+.+|.+++ .-.
T Consensus 290 i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~ 369 (754)
T TIGR01005 290 IQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASA 369 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555566666666666666555555555555555443 3333344445555555544 222
Q ss_pred CCchHHHHHHHHHHHHHHHH---HHHHHHHHhhCccccc
Q 002108 714 GDGTLQQHADHIQNELEELV---KILNDRCKQYGLRAKP 749 (965)
Q Consensus 714 ~n~~LKeri~~iNsel~eL~---K~l~E~~qq~Gl~~K~ 749 (965)
.......++.+++++++-.+ ..+++|.++..+....
T Consensus 370 ~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~~~ 408 (754)
T TIGR01005 370 QAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQNY 408 (754)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 23344445556666665333 6667788777776643
No 211
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.31 E-value=2.2 Score=43.36 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhHH
Q 002108 673 EKYKQSGDVASKL 685 (965)
Q Consensus 673 ee~KQv~eLEsqL 685 (965)
....+|.+|+...
T Consensus 91 ~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 91 KKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHh
Confidence 3333344444333
No 212
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=95.31 E-value=0.82 Score=44.35 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 660 DKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 660 lKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
|+.-++.|+.+-+..++.|.+|+.+|.++...+.+-.-.+.+|+..+.+
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k 90 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLK 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555554444433333344444444
No 213
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.23 E-value=1 Score=49.46 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=8.6
Q ss_pred HHHHHhhCcccccc
Q 002108 737 NDRCKQYGLRAKPT 750 (965)
Q Consensus 737 ~E~~qq~Gl~~K~~ 750 (965)
.+.||.+.|+-||+
T Consensus 174 rdlrqelavr~kq~ 187 (333)
T KOG1853|consen 174 RDLRQELAVRTKQT 187 (333)
T ss_pred HHHHHHHHHHHhhc
Confidence 44566666776664
No 214
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.16 E-value=0.79 Score=57.99 Aligned_cols=107 Identities=16% Similarity=0.167 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002108 632 CSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEG 711 (965)
Q Consensus 632 y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~ 711 (965)
++.++.++..-+.|+..+++.+.+.+..+....+.|+.+.++-.++|+.+...|..+-...+.+..++.+.++.+++ -
T Consensus 246 ~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~--~ 323 (1072)
T KOG0979|consen 246 HDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEE--K 323 (1072)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 34455666667777888888888888888888888887777777888887777777777777777777666666666 5
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 712 ESGDGTLQQHADHIQNELEELVKILNDRC 740 (965)
Q Consensus 712 ~~~n~~LKeri~~iNsel~eL~K~l~E~~ 740 (965)
++.+.+||.+.+..+..+..++|.+.+++
T Consensus 324 ~~~le~lk~~~~~rq~~i~~~~k~i~~~q 352 (1072)
T KOG0979|consen 324 KNKLESLKKAAEKRQKRIEKAKKMILDAQ 352 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666665555555544
No 215
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.15 E-value=0.69 Score=56.82 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002108 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLT 686 (965)
Q Consensus 611 a~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa 686 (965)
+...+..+..+|++.+.+++.+.+.|-+........+..-..+++++..++-.++.||+.|++.++++.+|..+|.
T Consensus 59 a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie 134 (660)
T KOG4302|consen 59 ASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIE 134 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666677777777766666666544444233334477889999999999999999999999999887743
No 216
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=95.14 E-value=0.99 Score=48.24 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=65.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002108 607 EATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLT 686 (965)
Q Consensus 607 eaeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa 686 (965)
+.-|++..+..-..+|-.++.++.-.+.++.........+.+.+ .+-..+++....+++.....+.-|..++.
T Consensus 18 QLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~-------~~K~~ELE~ce~ELqr~~~Ea~lLrekl~ 90 (202)
T PF06818_consen 18 QLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSL-------RTKQLELEVCENELQRKKNEAELLREKLG 90 (202)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-------HHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence 33444444444455555555555555554444444444333333 33334444444444444444555555566
Q ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHh---cCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 687 LEEATFRDIQEKKMEL-----------YQAILKME---GESGDGTLQQHADHIQNELEELVKILNDRC 740 (965)
Q Consensus 687 ~~Ea~LqDiQ~K~~EL-----------e~AL~~~~---~~~~n~~LKeri~~iNsel~eL~K~l~E~~ 740 (965)
..|..+..++..+..+ +....++. +...-..|+.+++++.++|..+...+.+.+
T Consensus 91 ~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~ 158 (202)
T PF06818_consen 91 QLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQR 158 (202)
T ss_pred hhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 6666666666555554 11111111 233457788888999888887765554443
No 217
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.13 E-value=0.79 Score=45.29 Aligned_cols=97 Identities=12% Similarity=0.250 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002108 632 CSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEG 711 (965)
Q Consensus 632 y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~ 711 (965)
+.+++..+...+....++|..+..+...+..+|=+|-.+.|+.. .....+...+..+++++.|++-+-+ |-|
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~----~~~~~~~~L~~el~~l~~ry~t~Le----llG 92 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR----ALKKEVEELEQELEELQQRYQTLLE----LLG 92 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH----Hhc
Confidence 33333333333333344444444444444444444443333322 2222334445556666666553222 223
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 712 ESGDGTLQQHADHIQNELEELVKILNDRCK 741 (965)
Q Consensus 712 ~~~n~~LKeri~~iNsel~eL~K~l~E~~q 741 (965)
.+ -|+++++..++..|+....+..+
T Consensus 93 EK-----~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 93 EK-----SEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred ch-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 45666666666666655554443
No 218
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=0.025 Score=63.37 Aligned_cols=72 Identities=21% Similarity=0.361 Sum_probs=60.4
Q ss_pred CCHH-HHHHHHHHHHhhCCCCCCcccHHHHHHHHHcC--CCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH
Q 002108 433 MTHS-EVQKYTKVFVQVDIDRDGKITGEQAYNLFLSW--RLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMER 504 (965)
Q Consensus 433 IS~e-Ek~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks--~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI~~ 504 (965)
++++ .+.++..+|..+|.++||+|+..|++..++.+ +.-..+.+.-|...|.++||.|+|+|+...+|-++.
T Consensus 70 l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~ 144 (325)
T KOG4223|consen 70 LTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVD 144 (325)
T ss_pred hCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhccc
Confidence 4443 46899999999999999999999999998654 455667788889999999999999999988876553
No 219
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=95.09 E-value=1.6 Score=55.85 Aligned_cols=13 Identities=8% Similarity=0.301 Sum_probs=10.0
Q ss_pred HHHHHHHhhCCCC
Q 002108 440 KYTKVFVQVDIDR 452 (965)
Q Consensus 440 ry~~~F~~lDkD~ 452 (965)
-+..+|+.++..+
T Consensus 167 al~~IFd~Le~~~ 179 (1041)
T KOG0243|consen 167 ALRQIFDTLEAQG 179 (1041)
T ss_pred HHHHHHHHHHhcC
Confidence 5778899997665
No 220
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=95.04 E-value=0.68 Score=57.60 Aligned_cols=122 Identities=14% Similarity=0.200 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHH---------hhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002108 627 EKIQFCSTKMQELILYKSRCDNRLNEITER---------VSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQE 697 (965)
Q Consensus 627 eKi~~y~sKmQELq~~ksraeqeL~el~ee---------isalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~ 697 (965)
+-++|++.++.++..+...++.+|++-+.+ ....-.++..|+.++.+-..+..+|...+....-.++.++.
T Consensus 267 ~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~ 346 (726)
T PRK09841 267 QSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLE 346 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHH
Confidence 344566666666666666666666655432 11122222233322222222222222222111123566666
Q ss_pred HHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHHHH---HHHHHHHHhhCcccc
Q 002108 698 KKMELYQAILKME-GESGDGTLQQHADHIQNELEELV---KILNDRCKQYGLRAK 748 (965)
Q Consensus 698 K~~ELe~AL~~~~-~~~~n~~LKeri~~iNsel~eL~---K~l~E~~qq~Gl~~K 748 (965)
++.+|++++.+++ .-......+.++.++.++++-.+ ..++.|+++..+..-
T Consensus 347 ~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a 401 (726)
T PRK09841 347 KRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKS 401 (726)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6677776666654 22234556667777777777444 677888888877653
No 221
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=95.03 E-value=0.68 Score=50.30 Aligned_cols=14 Identities=36% Similarity=0.836 Sum_probs=7.0
Q ss_pred ccccchhh---hhcccc
Q 002108 766 GTADWDED---WDKLED 779 (965)
Q Consensus 766 ~a~~w~e~---w~~~~d 779 (965)
.+..||-. |..+.+
T Consensus 203 ~~g~~~~~~~~W~~l~~ 219 (251)
T PF11932_consen 203 QAGVWDPATGQWQWLPD 219 (251)
T ss_pred ceeeecCCCCCCeECCH
Confidence 34455532 666555
No 222
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.03 E-value=1.3 Score=47.02 Aligned_cols=44 Identities=14% Similarity=0.258 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002108 658 SGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKME 701 (965)
Q Consensus 658 salKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~E 701 (965)
..-..+|-.|+..+-.-..+..+++.+|...+..+..++.++..
T Consensus 64 ~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~ 107 (194)
T PF15619_consen 64 QRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKH 107 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555454455555555555555555555555443
No 223
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=0.91 Score=54.94 Aligned_cols=75 Identities=17% Similarity=0.237 Sum_probs=38.0
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----------HHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 002108 650 LNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEAT----------FRDIQEKKMELYQAILKMEGESGDGTLQ 719 (965)
Q Consensus 650 L~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~----------LqDiQ~K~~ELe~AL~~~~~~~~n~~LK 719 (965)
+..+..++..++++++.|+.++++..+.+..|+++|+....+ ++.++.++..|+..|.. =+
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e---------~~ 494 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEE---------KK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---------HH
Confidence 344444444555555555555555555555555554443322 44455556666666555 44
Q ss_pred HHHHHHHHHHHHHH
Q 002108 720 QHADHIQNELEELV 733 (965)
Q Consensus 720 eri~~iNsel~eL~ 733 (965)
.+++++..+|.+|+
T Consensus 495 ~~ve~L~~~l~~l~ 508 (652)
T COG2433 495 KRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 224
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=94.96 E-value=1.2 Score=48.05 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002108 716 GTLQQHADHIQNELEELVKILNDRCKQ 742 (965)
Q Consensus 716 ~~LKeri~~iNsel~eL~K~l~E~~qq 742 (965)
..++.++.+++.++..|...++++|+.
T Consensus 188 dl~~~~~~~l~~~l~~Lq~~ln~~R~~ 214 (240)
T PF12795_consen 188 DLLKARIQRLQQQLQALQNLLNQKRRQ 214 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777777777765
No 225
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.93 E-value=0.7 Score=56.26 Aligned_cols=73 Identities=19% Similarity=0.129 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002108 614 KVEELEKEILTSREKIQFCSTKMQEL----ILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE 688 (965)
Q Consensus 614 Kl~eaE~ei~~~~eKi~~y~sKmQEL----q~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~ 688 (965)
.+..+|+.++-+-...+.++.++..| ....- .++|.+-+++|..+..+=+.|.+++=.+-..|+.|-.++...
T Consensus 410 Rva~lEkKvqa~~kERDalr~e~kslk~ela~~l~--~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~ 486 (961)
T KOG4673|consen 410 RVATLEKKVQALTKERDALRREQKSLKKELAAALL--KDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEA 486 (961)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Confidence 34444444444444445555554422 22222 267888888888888887777666666555555555443333
No 226
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.87 E-value=1.4 Score=56.14 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=65.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 002108 607 EATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK 684 (965)
Q Consensus 607 eaeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsq 684 (965)
+.+++..++.-++..|..++-++...+..+.++....++.+.++.+..-+|++++|+++....+.++=.+++.+++++
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~ 754 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDR 754 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455577777788888888888888888888888889999999999998899999999998888887777888888876
No 227
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.87 E-value=0.77 Score=57.48 Aligned_cols=73 Identities=16% Similarity=0.209 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 636 MQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 636 mQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
++.+..+....++.|.+++.++..++..-..+..+++.+......|+.++.++|+.++.++.|+..|+..|.+
T Consensus 619 lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~ 691 (769)
T PF05911_consen 619 LESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEK 691 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444444444444555555555666666666666666666666655
No 228
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.85 E-value=0.91 Score=51.34 Aligned_cols=112 Identities=11% Similarity=0.151 Sum_probs=65.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--
Q 002108 637 QELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESG-- 714 (965)
Q Consensus 637 QELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~-- 714 (965)
.++.......+++..++..++.+++.+.+.|..+-++-.+....++-++...+..+..+.+++.-+...|.+++.-+.
T Consensus 60 ~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~n 139 (314)
T PF04111_consen 60 EELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVYN 139 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 333333333333444444455555555555555555556666666666777777777788887777777777442221
Q ss_pred --------------C-------chHHHHHHHHHHHHHHHHHHHHHHHHhhCcccc
Q 002108 715 --------------D-------GTLQQHADHIQNELEELVKILNDRCKQYGLRAK 748 (965)
Q Consensus 715 --------------n-------~~LKeri~~iNsel~eL~K~l~E~~qq~Gl~~K 748 (965)
| .+.++.-.+||+-+-++.-+|.=-++++|+.++
T Consensus 140 ~~F~I~hdG~fGTINGlRLGrl~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~ 194 (314)
T PF04111_consen 140 DTFHIWHDGPFGTINGLRLGRLPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQ 194 (314)
T ss_dssp TT--EEEETTEEEETTEEE--BTTB---HHHHHHHHHHHHHHHHHHHHHCT---S
T ss_pred ceeeEeecCCeeeECCeeeccCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 1 456789999999888777667666777787753
No 229
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.82 E-value=1 Score=55.27 Aligned_cols=89 Identities=16% Similarity=0.254 Sum_probs=53.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH----HHHH
Q 002108 655 ERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQ----NELE 730 (965)
Q Consensus 655 eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iN----sel~ 730 (965)
.++..+....+.|+.++.+.-+.+++|+.+|..++..++.....-..|...|...+. ....-|++|..++. .+|.
T Consensus 514 aE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~-~y~~alqekvsevEsrl~E~L~ 592 (739)
T PF07111_consen 514 AERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQE-VYERALQEKVSEVESRLREQLS 592 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666666666666777777777776666666666666666655220 01223666666655 3455
Q ss_pred HHHHHHHHHHHhhC
Q 002108 731 ELVKILNDRCKQYG 744 (965)
Q Consensus 731 eL~K~l~E~~qq~G 744 (965)
+++|-|||+|+.+.
T Consensus 593 ~~E~rLNeARREHt 606 (739)
T PF07111_consen 593 EMEKRLNEARREHT 606 (739)
T ss_pred HHHHHHHHHHHHHH
Confidence 66788888776654
No 230
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.81 E-value=2.4 Score=49.11 Aligned_cols=52 Identities=12% Similarity=0.203 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHH
Q 002108 621 EILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYE 672 (965)
Q Consensus 621 ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyE 672 (965)
|+..-++..+.-+.++-++...+.++.++|..+.++...++-++..|-.+|.
T Consensus 110 El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ 161 (499)
T COG4372 110 ELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRR 161 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445555555555555555555555554444444444433333
No 231
>PRK01156 chromosome segregation protein; Provisional
Probab=94.79 E-value=1.3 Score=56.16 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 002108 724 HIQNELEELVKILNDRCKQY 743 (965)
Q Consensus 724 ~iNsel~eL~K~l~E~~qq~ 743 (965)
.++.++.+|.+.+.+.....
T Consensus 473 ~~~~~i~~l~~~i~~l~~~~ 492 (895)
T PRK01156 473 HYNEKKSRLEEKIREIEIEV 492 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554443
No 232
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.78 E-value=0.75 Score=55.61 Aligned_cols=114 Identities=18% Similarity=0.307 Sum_probs=57.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 002108 637 QELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY---KQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGES 713 (965)
Q Consensus 637 QELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~---KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~ 713 (965)
+.|+...+..+.+|.+++.+|..|+.++++++.+++.++ +.+..++..|..++-.|..-..+..+|+..|..
T Consensus 432 e~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~----- 506 (652)
T COG2433 432 ERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAE----- 506 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 333333333333444444445555555555554444443 223333444544554555444445555444444
Q ss_pred CCchHHHHHHHHH--------HHHHHHH-HHHHHHHHhhCccccccccccccCCCC
Q 002108 714 GDGTLQQHADHIQ--------NELEELV-KILNDRCKQYGLRAKPTLLVELPFGWQ 760 (965)
Q Consensus 714 ~n~~LKeri~~iN--------sel~eL~-K~l~E~~qq~Gl~~K~~~~~E~~~g~~ 760 (965)
|+ +|..+. ..++.|. ..+.+++-.+|+..=-...||=|.|-.
T Consensus 507 ----l~-k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e~~~gik~GDvi~v~~~sG~g 557 (652)
T COG2433 507 ----LR-KMRKLELSGKGTPVKVVEKLTLEAIEEAEEEYGIKEGDVILVEDPSGGG 557 (652)
T ss_pred ----HH-HHHhhhhcCCCcceehhhhhhHHHHHhHHHhhccccCcEEEEEcCCCcc
Confidence 11 011100 2233333 455678889999888888999888755
No 233
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=94.76 E-value=0.86 Score=49.19 Aligned_cols=19 Identities=5% Similarity=0.237 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002108 690 ATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 690 a~LqDiQ~K~~ELe~AL~~ 708 (965)
..+-+++.++.++...|..
T Consensus 120 ~~l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 120 QQLSEARQRLQEIRNQLQN 138 (240)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444444
No 234
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.66 E-value=2.4 Score=52.01 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHH
Q 002108 622 ILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYE 672 (965)
Q Consensus 622 i~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyE 672 (965)
+.+++++++.+..++.++..+..++..++..+.+++.+.+.+.++|+.+|.
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444554444455555554444443
No 235
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.65 E-value=3.1 Score=48.94 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002108 718 LQQHADHIQNELEELVKILN 737 (965)
Q Consensus 718 LKeri~~iNsel~eL~K~l~ 737 (965)
++++++.++.++++++..+.
T Consensus 289 ~~~~l~~~~~~l~~~~~~l~ 308 (457)
T TIGR01000 289 VKQEITDLNQKLLELESKIK 308 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555666665554333
No 236
>PRK12704 phosphodiesterase; Provisional
Probab=94.65 E-value=1.5 Score=52.81 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=16.9
Q ss_pred HHHHHHHHhhCccc---cccccccccCC
Q 002108 734 KILNDRCKQYGLRA---KPTLLVELPFG 758 (965)
Q Consensus 734 K~l~E~~qq~Gl~~---K~~~~~E~~~g 758 (965)
+.+..+.|++--.. +-+++|.||..
T Consensus 192 ~i~~~a~qr~a~~~~~e~~~~~v~lp~d 219 (520)
T PRK12704 192 EILAQAIQRCAADHVAETTVSVVNLPND 219 (520)
T ss_pred HHHHHHHHhhcchhhhhhceeeeecCCc
Confidence 45666777776433 66688999874
No 237
>PRK11281 hypothetical protein; Provisional
Probab=94.63 E-value=0.79 Score=59.55 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002108 717 TLQQHADHIQNELEELVKILNDRCKQ 742 (965)
Q Consensus 717 ~LKeri~~iNsel~eL~K~l~E~~qq 742 (965)
.++.++++++.+++.|...++++|.+
T Consensus 231 ~~~~~~~~~~~~~~~lq~~in~kr~~ 256 (1113)
T PRK11281 231 YLTARIQRLEHQLQLLQEAINSKRLT 256 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666665543
No 238
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.62 E-value=1.7 Score=57.79 Aligned_cols=19 Identities=5% Similarity=0.018 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002108 623 LTSREKIQFCSTKMQELIL 641 (965)
Q Consensus 623 ~~~~eKi~~y~sKmQELq~ 641 (965)
.+.++.++.|+..++++..
T Consensus 847 ~~~~~aL~~y~~~l~~l~~ 865 (1353)
T TIGR02680 847 EAVGLALKRFGDHLHTLEV 865 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555433
No 239
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=94.58 E-value=0.38 Score=62.22 Aligned_cols=27 Identities=15% Similarity=0.243 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002108 717 TLQQHADHIQNELEELVKILNDRCKQY 743 (965)
Q Consensus 717 ~LKeri~~iNsel~eL~K~l~E~~qq~ 743 (965)
.++.++.+++.+++.|...++++|++.
T Consensus 212 l~~~~~~~l~~~~~~Lq~~in~kR~~~ 238 (1109)
T PRK10929 212 LAKKRSQQLDAYLQALRNQLNSQRQRE 238 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777777766554
No 240
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=94.58 E-value=1.5 Score=50.74 Aligned_cols=111 Identities=16% Similarity=0.221 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----
Q 002108 615 VEELEKEILTSREKIQ-FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE---- 689 (965)
Q Consensus 615 l~eaE~ei~~~~eKi~-~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~E---- 689 (965)
+.++-+++.+-.+.++ .|+.+..|++.-+.+.+..|.++.++|..++++|+.|++.+.++..-++-.+.+|..--
T Consensus 231 l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~ 310 (384)
T PF03148_consen 231 LEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPN 310 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCc
Confidence 4444455555556665 68999999999999999999999999999999999999999998877666665543322
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Q 002108 690 ------ATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVK 734 (965)
Q Consensus 690 ------a~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K 734 (965)
.....|..+..+|...+.. |++++.+....+..|.+
T Consensus 311 vElcrD~~q~~L~~Ev~~l~~~i~~---------L~~~L~~a~~~l~~L~~ 352 (384)
T PF03148_consen 311 VELCRDPPQYGLIEEVKELRESIEA---------LQEKLDEAEASLQKLER 352 (384)
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 1122344445555555555 66666666666665553
No 241
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.58 E-value=0.73 Score=56.35 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhH----
Q 002108 609 TEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK---- 684 (965)
Q Consensus 609 eEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsq---- 684 (965)
++...|+.++..-|..+..+...|.++.-++.....++.+.+..+..++..+.++.+.|..-|+..-|...+++.+
T Consensus 380 te~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~ 459 (716)
T KOG4593|consen 380 TEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEEL 459 (716)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHH
Confidence 4566778888877888888888899998888888888888888887777777777777776666666555555543
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 002108 685 ----------LTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV 733 (965)
Q Consensus 685 ----------La~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~ 733 (965)
++..|+.++|++.++...++.|.. .+.++..|.+.|..+-.+++.|+
T Consensus 460 ~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~--qr~e~~~~~e~i~~~~ke~~~Le 516 (716)
T KOG4593|consen 460 YREITGQKKRLEKLEHELKDLQSQLSSREQSLLF--QREESELLREKIEQYLKELELLE 516 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhhhHHHHHHHHHHHHH
Confidence 556667788888877766666666 66677888888999988888777
No 242
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=94.57 E-value=4.9 Score=43.25 Aligned_cols=42 Identities=10% Similarity=0.249 Sum_probs=26.0
Q ss_pred HHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002108 642 YKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVAS 683 (965)
Q Consensus 642 ~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEs 683 (965)
.+..+.+.+..+...+......++..+.+|+..++++.++..
T Consensus 101 ~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~ 142 (236)
T cd07651 101 KRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTL 142 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 334445555555555666667777777777777766665543
No 243
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.56 E-value=1 Score=52.72 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 002108 718 LQQHADHIQNELEELV 733 (965)
Q Consensus 718 LKeri~~iNsel~eL~ 733 (965)
..++|..++.+|..|+
T Consensus 433 ~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 433 KDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHhHh
Confidence 3444444444444444
No 244
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.55 E-value=0.97 Score=58.16 Aligned_cols=84 Identities=18% Similarity=0.292 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002108 610 EADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITE--RVSGDKREVELLAKKYEEKYKQSGDVASKLTL 687 (965)
Q Consensus 610 Ea~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~e--eisalKRevqsLr~eyEee~KQv~eLEsqLa~ 687 (965)
++..-+.+++.+|..+.+........++.++.-+.......+...+ ....++++++.++.+++++.+.+..+ +|..
T Consensus 620 ~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~ 697 (1317)
T KOG0612|consen 620 EISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL--RLQD 697 (1317)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhh
Confidence 3444455666666666666555555555544433333333333322 23345566666777777776666555 3333
Q ss_pred HHHHHHHH
Q 002108 688 EEATFRDI 695 (965)
Q Consensus 688 ~Ea~LqDi 695 (965)
.|++.+.|
T Consensus 698 ~e~~~~e~ 705 (1317)
T KOG0612|consen 698 KEAQMKEI 705 (1317)
T ss_pred HHHHHHHH
Confidence 34443333
No 245
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.55 E-value=1.3 Score=44.45 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 659 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 659 alKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
.++..+++|+.++++....+..++.+...++..++.++.++..+.+.+++
T Consensus 70 ~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~k 119 (151)
T PF11559_consen 70 RLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQK 119 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444
No 246
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.53 E-value=2.5 Score=53.24 Aligned_cols=11 Identities=9% Similarity=0.286 Sum_probs=5.1
Q ss_pred HHHHHHHHHHh
Q 002108 472 REVLKQVWDLS 482 (965)
Q Consensus 472 ~eeL~~IW~La 482 (965)
.++|..+....
T Consensus 155 ~eei~kL~e~L 165 (775)
T PF10174_consen 155 DEEIEKLQEML 165 (775)
T ss_pred HHHHHHHHHHH
Confidence 34455555443
No 247
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=94.52 E-value=3 Score=46.28 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 002108 614 KVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQS 678 (965)
Q Consensus 614 Kl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv 678 (965)
++..++.++..+..+|.-.+..+.-|..|+. ++= ---..+|+.+.|.|+.|+...+++.-.+
T Consensus 82 ~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD-~EY--PvK~vqIa~L~rqlq~lk~~qqdEldel 143 (258)
T PF15397_consen 82 KLSKLQQQLEQLDAKIQKTQEELNFLSTYKD-HEY--PVKAVQIANLVRQLQQLKDSQQDELDEL 143 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333333333333333444443 221 1123467777777777776666665433
No 248
>PRK10869 recombination and repair protein; Provisional
Probab=94.51 E-value=1.2 Score=53.97 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=25.6
Q ss_pred HHHHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 002108 701 ELYQAILKME-GESGDGTLQQHADHIQNELEELVKILNDRCKQYG 744 (965)
Q Consensus 701 ELe~AL~~~~-~~~~n~~LKeri~~iNsel~eL~K~l~E~~qq~G 744 (965)
++++.|..++ ....-..|++++..+..+|.++-+.|+++|++.-
T Consensus 328 ~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA 372 (553)
T PRK10869 328 QLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYA 372 (553)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666555 2223455666666666666665566666666644
No 249
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=94.44 E-value=0.31 Score=56.37 Aligned_cols=96 Identities=11% Similarity=0.062 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002108 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATF 692 (965)
Q Consensus 613 kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~L 692 (965)
.++.+++++|++.-.+...+..|.-.+...-......|.+..-+|..|+.|...|+.++=.....++-+..++..+|+..
T Consensus 13 qr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~ 92 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLR 92 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554544444433333322222233333333444444444333333333333344444455555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 002108 693 RDIQEKKMELYQAILK 708 (965)
Q Consensus 693 qDiQ~K~~ELe~AL~~ 708 (965)
-..++++.+|..+=.+
T Consensus 93 ~r~~~eir~~~~q~~e 108 (459)
T KOG0288|consen 93 IRSLNEIRELREQKAE 108 (459)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 6666666666655555
No 250
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=94.42 E-value=1.8 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=16.6
Q ss_pred HHHHHHHHhhCccc---cccccccccCC
Q 002108 734 KILNDRCKQYGLRA---KPTLLVELPFG 758 (965)
Q Consensus 734 K~l~E~~qq~Gl~~---K~~~~~E~~~g 758 (965)
+.+..+.|++--.. .-+++|.||..
T Consensus 186 ~i~~~aiqr~a~~~~~e~~~~~v~lp~d 213 (514)
T TIGR03319 186 EILATAIQRYAGDHVAETTVSVVNLPND 213 (514)
T ss_pred HHHHHHHHhccchhhhhheeeeEEcCCh
Confidence 45566777776433 66688998874
No 251
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.41 E-value=1.2 Score=49.35 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 683 SKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 683 sqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
.++...|+.|.....++..|++.|-.
T Consensus 95 ~qv~~lEgQl~s~Kkqie~Leqelkr 120 (307)
T PF10481_consen 95 SQVNFLEGQLNSCKKQIEKLEQELKR 120 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666
No 252
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=94.38 E-value=3.1 Score=49.68 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHH
Q 002108 692 FRDIQEKKMELYQAILKME--GESGDGTLQQHADHIQNEL 729 (965)
Q Consensus 692 LqDiQ~K~~ELe~AL~~~~--~~~~n~~LKeri~~iNsel 729 (965)
|+=+++++...+..+.++. ...+...|+++|+.+....
T Consensus 142 l~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n 181 (475)
T PRK10361 142 LSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLN 181 (475)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544 2234577887777665433
No 253
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.37 E-value=1.4 Score=51.78 Aligned_cols=86 Identities=19% Similarity=0.243 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHH-HHH----H--HHHHHHHHHHhHHHHHHHH
Q 002108 619 EKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLA-KKY----E--EKYKQSGDVASKLTLEEAT 691 (965)
Q Consensus 619 E~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr-~ey----E--ee~KQv~eLEsqLa~~Ea~ 691 (965)
+..|++++-.--+|.+|.+||+++..+-+- +-.+ |..||+.|+.|- -+| | +..|.+..|+.-|+.+...
T Consensus 330 q~~IqdLq~sN~yLe~kvkeLQ~k~~kQqv-fvDi---inkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~ 405 (527)
T PF15066_consen 330 QNRIQDLQCSNLYLEKKVKELQMKITKQQV-FVDI---INKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKH 405 (527)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHHhhhhhH-HHHH---HHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 345777777767899999999999887653 3333 346888887651 111 1 1124456666667777666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002108 692 FRDIQEKKMELYQAILK 708 (965)
Q Consensus 692 LqDiQ~K~~ELe~AL~~ 708 (965)
|+.-++.+.-|+-+|.+
T Consensus 406 LqEsr~eKetLqlelkK 422 (527)
T PF15066_consen 406 LQESRNEKETLQLELKK 422 (527)
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 77666666666666666
No 254
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.36 E-value=0.74 Score=57.17 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHHHH
Q 002108 694 DIQEKKMELYQAILKME-GESGDGTLQQHADHIQNELEELV 733 (965)
Q Consensus 694 DiQ~K~~ELe~AL~~~~-~~~~n~~LKeri~~iNsel~eL~ 733 (965)
.+|-++.-|....++.+ -..+..-|.|+|..+|++++++.
T Consensus 108 slQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 108 SLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333 22233335556666665555433
No 255
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.33 E-value=1 Score=56.39 Aligned_cols=99 Identities=15% Similarity=0.300 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002108 623 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMEL 702 (965)
Q Consensus 623 ~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~EL 702 (965)
..+.++++.+.....+|.....+|.++|+.+..++.+.+..|..|+.+++.-.+-...++.+|...+..++.+..++.++
T Consensus 592 ~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~ 671 (769)
T PF05911_consen 592 KELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDL 671 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 45556666666666778888888888888888888888888888888887666666666777666666666666666666
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 002108 703 YQAILKMEGESGDGTLQQHADHIQNELE 730 (965)
Q Consensus 703 e~AL~~~~~~~~n~~LKeri~~iNsel~ 730 (965)
++.+.. |+.+|..+..+|.
T Consensus 672 e~E~~~---------l~~Ki~~Le~Ele 690 (769)
T PF05911_consen 672 EAEAEE---------LQSKISSLEEELE 690 (769)
T ss_pred HHHHHH---------HHHHHHHHHHHHH
Confidence 666666 5555555555554
No 256
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=94.29 E-value=1.1 Score=52.52 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002108 611 ADKKVEELEKEILTSREKIQF--CSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE 688 (965)
Q Consensus 611 a~kKl~eaE~ei~~~~eKi~~--y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~ 688 (965)
|..++.+--++|.+.+++++. +-+..+||..++.+..--+..- +....++.|++++|-+.+=...+++.++.++-.+
T Consensus 257 A~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~-~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~L 335 (554)
T KOG4677|consen 257 ALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSP-DKSTASRKEFEETRVELPFSAEDSAHIQDQYTLL 335 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCC-CcchhHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 556777777888899999987 5566788988888775433332 3355667788877766666566666666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002108 689 EATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 689 Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
+..+.||.+|...|+.+++.
T Consensus 336 rs~~~d~EAq~r~l~s~~~~ 355 (554)
T KOG4677|consen 336 RSQIIDIEAQDRHLESAGQT 355 (554)
T ss_pred HHHHHHHHHHHHhHHHHhHH
Confidence 55566666555555555544
No 257
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=94.29 E-value=0.63 Score=58.87 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHhc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccc
Q 002108 685 LTLEEATFRDIQEKKM-----ELYQAILKMEG--ESGDGTLQQHADHIQNELEELVKILNDRCKQYGLRAKPT 750 (965)
Q Consensus 685 La~~Ea~LqDiQ~K~~-----ELe~AL~~~~~--~~~n~~LKeri~~iNsel~eL~K~l~E~~qq~Gl~~K~~ 750 (965)
|+.+|.+|+-|++|+- ++..++..|+. -.....+|..|..++..|.+++-+++||.|++|=.--++
T Consensus 1162 IEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~e~PKnltdvK~missf~d~laeiE~LrnErIKkHGaSkePL 1234 (1439)
T PF12252_consen 1162 IEKLEKQLQVIHTKLYDAYLVEITKQISALEKEKPKNLTDVKSMISSFNDRLAEIEFLRNERIKKHGASKEPL 1234 (1439)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCcc
Confidence 4555566666666632 33344445552 123468999999999999999999999999999655444
No 258
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=94.27 E-value=1.2 Score=51.70 Aligned_cols=84 Identities=12% Similarity=0.012 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002108 625 SREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQ 704 (965)
Q Consensus 625 ~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~ 704 (965)
++.|..-++..+..+..+...-+.+|++++++...++.+.-+++.+.+-..+++..++..-.-.-.+++.++.|..+.+.
T Consensus 32 ~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q~~e~~n 111 (459)
T KOG0288|consen 32 LSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQKAEFEN 111 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 33333434444444444444444555555555555555555555555555555555554433444567778888888887
Q ss_pred HHHH
Q 002108 705 AILK 708 (965)
Q Consensus 705 AL~~ 708 (965)
+-..
T Consensus 112 ~~~~ 115 (459)
T KOG0288|consen 112 AELA 115 (459)
T ss_pred chhh
Confidence 7777
No 259
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.26 E-value=1.8 Score=48.93 Aligned_cols=86 Identities=10% Similarity=0.164 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHH
Q 002108 623 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEAT-------FRDI 695 (965)
Q Consensus 623 ~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~-------LqDi 695 (965)
.+--+++..-..+|-.|.....+...++..-.++|+.+..+|-.|++++..-.....+|...|..+... |+++
T Consensus 202 ~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~el 281 (306)
T PF04849_consen 202 LDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQEL 281 (306)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666666666666666677777777788888777777777766667777776665533 4555
Q ss_pred HHHHHHHHHHHHH
Q 002108 696 QEKKMELYQAILK 708 (965)
Q Consensus 696 Q~K~~ELe~AL~~ 708 (965)
|.|+.|..+-|..
T Consensus 282 qdkY~E~~~mL~E 294 (306)
T PF04849_consen 282 QDKYAECMAMLHE 294 (306)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544444
No 260
>PRK00106 hypothetical protein; Provisional
Probab=94.23 E-value=2.2 Score=51.62 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=16.3
Q ss_pred HHHHHHHHhhCccc---cccccccccCC
Q 002108 734 KILNDRCKQYGLRA---KPTLLVELPFG 758 (965)
Q Consensus 734 K~l~E~~qq~Gl~~---K~~~~~E~~~g 758 (965)
..+..+.|++--.. +-++.|.||-.
T Consensus 207 ~ii~~aiqr~a~~~~~e~tvs~v~lp~d 234 (535)
T PRK00106 207 DLLAQAMQRLAGEYVTEQTITTVHLPDD 234 (535)
T ss_pred HHHHHHHHHhcchhhhhheeeeEEcCCh
Confidence 44566667766443 66688888874
No 261
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=94.18 E-value=0.92 Score=40.36 Aligned_cols=100 Identities=16% Similarity=0.365 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 630 QFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKM 709 (965)
Q Consensus 630 ~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~ 709 (965)
..|...+.++......++..|..... ...-..++ ..+++++.++..|...+.++.+|...-..| ..
T Consensus 4 ~~f~~~~~~l~~Wl~~~e~~l~~~~~--~~~~~~~~-------~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L----~~- 69 (105)
T PF00435_consen 4 QQFQQEADELLDWLQETEAKLSSSEP--GSDLEELE-------EQLKKHKELQEEIESRQERLESLNEQAQQL----ID- 69 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCTH--SSSHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC--CCCHHHHH-------HHHHHHhhhhhHHHHHHHHHHHHHHHHHHH----HH-
Confidence 44556666666666665555522211 12222233 333444555555555555555555443333 11
Q ss_pred hcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002108 710 EGESGDGTLQQHADHIQNELEELVKILNDRCKQY 743 (965)
Q Consensus 710 ~~~~~n~~LKeri~~iNsel~eL~K~l~E~~qq~ 743 (965)
.+......|+.+++.|+..++.|.+...++++++
T Consensus 70 ~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L 103 (105)
T PF00435_consen 70 SGPEDSDEIQEKLEELNQRWEALCELVEERRQKL 103 (105)
T ss_dssp TTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 0233457899999999999999999999988764
No 262
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.17 E-value=1.1 Score=52.72 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 002108 724 HIQNELEELVKILNDRCKQ 742 (965)
Q Consensus 724 ~iNsel~eL~K~l~E~~qq 742 (965)
.+..+|+++...+.++..+
T Consensus 288 ~~~~~l~~~~~~l~~~~~~ 306 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESK 306 (457)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555444444433
No 263
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=94.16 E-value=2.5 Score=45.93 Aligned_cols=91 Identities=13% Similarity=0.149 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002108 616 EELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDI 695 (965)
Q Consensus 616 ~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDi 695 (965)
..++.++.+.+...+-|+.+.+.-... .+ ++=-++.-+++..+...+..++..|.+.-.++..|..+|..+|..+.++
T Consensus 55 k~~e~~~~~~~~~~~k~e~~A~~Al~~-g~-E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~ 132 (225)
T COG1842 55 KQLERKLEEAQARAEKLEEKAELALQA-GN-EDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAEL 132 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC-CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444544444444444443331111 11 1122333455555555555666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHH
Q 002108 696 QEKKMELYQAILK 708 (965)
Q Consensus 696 Q~K~~ELe~AL~~ 708 (965)
..++..|.+....
T Consensus 133 ~~~~~~l~ar~~~ 145 (225)
T COG1842 133 RAKKEALKARKAA 145 (225)
T ss_pred HHHHHHHHHHHHH
Confidence 6666555554444
No 264
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=94.16 E-value=1.1 Score=52.69 Aligned_cols=15 Identities=7% Similarity=-0.077 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhhC
Q 002108 730 EELVKILNDRCKQYG 744 (965)
Q Consensus 730 ~eL~K~l~E~~qq~G 744 (965)
..|+++|.|+.+|.=
T Consensus 372 aaLE~AR~EA~RQ~~ 386 (434)
T PRK15178 372 QTLQQGKLQALRERQ 386 (434)
T ss_pred HHHHHHHHHHHhhhh
Confidence 367789988877654
No 265
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.15 E-value=4.4 Score=44.69 Aligned_cols=28 Identities=11% Similarity=-0.010 Sum_probs=12.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002108 656 RVSGDKREVELLAKKYEEKYKQSGDVAS 683 (965)
Q Consensus 656 eisalKRevqsLr~eyEee~KQv~eLEs 683 (965)
+++.|++++..++.-+|+..|-|.+||.
T Consensus 92 q~s~Leddlsqt~aikeql~kyiReLEQ 119 (333)
T KOG1853|consen 92 QESQLEDDLSQTHAIKEQLRKYIRELEQ 119 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 266
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.15 E-value=3.2 Score=51.07 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=13.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHH
Q 002108 715 DGTLQQHADHIQNELEELVKILN 737 (965)
Q Consensus 715 n~~LKeri~~iNsel~eL~K~l~ 737 (965)
+.-||++.+.+++++.+|.|+..
T Consensus 277 v~~LqeE~e~Lqskl~~~~~l~~ 299 (716)
T KOG4593|consen 277 VGLLQEELEGLQSKLGRLEKLQS 299 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666665544
No 267
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.14 E-value=3.3 Score=46.58 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=17.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002108 716 GTLQQHADHIQNELEELVKILNDRCKQY 743 (965)
Q Consensus 716 ~~LKeri~~iNsel~eL~K~l~E~~qq~ 743 (965)
.+|++|+.+++++---|...|.+++++-
T Consensus 217 es~eERL~QlqsEN~LLrQQLddA~~K~ 244 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQLDDAHNKA 244 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666666665543
No 268
>PF13514 AAA_27: AAA domain
Probab=94.10 E-value=3 Score=54.41 Aligned_cols=57 Identities=28% Similarity=0.456 Sum_probs=35.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 002108 676 KQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 732 (965)
Q Consensus 676 KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL 732 (965)
..+.+++..+..++..+.++..++.+++.+|..+.+...-+.|.+++..+..++.++
T Consensus 896 ~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~ 952 (1111)
T PF13514_consen 896 AELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQEREEAEAELEEL 952 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 344555555666666777777777777777777775444455555555555555543
No 269
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.07 E-value=1.1 Score=54.24 Aligned_cols=51 Identities=12% Similarity=0.261 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002108 692 FRDIQEKKMELYQAILKME-GESGDGTLQQHADHIQNELEELVKILNDRCKQ 742 (965)
Q Consensus 692 LqDiQ~K~~ELe~AL~~~~-~~~~n~~LKeri~~iNsel~eL~K~l~E~~qq 742 (965)
+.++...+.+++..|..++ ....-..|+++++.+..+|.++-+.++..|++
T Consensus 324 ~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~ 375 (563)
T TIGR00634 324 VEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRK 375 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666655 33334556666666666666555444444444
No 270
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.03 E-value=4.1 Score=43.50 Aligned_cols=88 Identities=23% Similarity=0.252 Sum_probs=54.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH---HHHHH
Q 002108 658 SGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNEL---EELVK 734 (965)
Q Consensus 658 salKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel---~eL~K 734 (965)
...++-.+.--.+|+++.+++.-++..|..+|-+.--..+++.+|+..+-.| ++.+.+|-..-+.+...+ +...|
T Consensus 70 kEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~--~~nlk~l~~~ee~~~q~~d~~e~~ik 147 (205)
T KOG1003|consen 70 KEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRIL--DSNLKSLSAKEEKLEQKEEKYEEELK 147 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh--HhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344444445556777777777777777777766666677777777777663 344444555444444433 34447
Q ss_pred HHHHHHHhhCccc
Q 002108 735 ILNDRCKQYGLRA 747 (965)
Q Consensus 735 ~l~E~~qq~Gl~~ 747 (965)
.+.++-+.--+++
T Consensus 148 ~ltdKLkEaE~rA 160 (205)
T KOG1003|consen 148 ELTDKLKEAETRA 160 (205)
T ss_pred HHHHHHhhhhhhH
Confidence 7777777777766
No 271
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.03 E-value=2 Score=52.05 Aligned_cols=90 Identities=21% Similarity=0.251 Sum_probs=53.6
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 002108 649 RLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE---ATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHI 725 (965)
Q Consensus 649 eL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~E---a~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~i 725 (965)
+|.++.+|+..+++-..+-...+++..+...+++.+|...+ ..+..++.++.+++..+.+ +-+++..+
T Consensus 302 ~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~---------~a~~Ls~~ 372 (563)
T TIGR00634 302 RLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDK---------AAVALSLI 372 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH
Confidence 34555554444444332222233444455555555544433 4466777777777777766 66666666
Q ss_pred HHHHH-HHHHHHHHHHHhhCccc
Q 002108 726 QNELE-ELVKILNDRCKQYGLRA 747 (965)
Q Consensus 726 Nsel~-eL~K~l~E~~qq~Gl~~ 747 (965)
..+.. .|.+..++-++.+||..
T Consensus 373 R~~~a~~l~~~v~~~l~~L~m~~ 395 (563)
T TIGR00634 373 RRKAAERLAKRVEQELKALAMEK 395 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC
Confidence 65555 77789999999999874
No 272
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=93.97 E-value=1.3 Score=42.51 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 002108 618 LEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEI 653 (965)
Q Consensus 618 aE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el 653 (965)
+-.++..+++++..+..+++.|.....++.--++++
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL 43 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEEL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666666666666665444444
No 273
>PRK11519 tyrosine kinase; Provisional
Probab=93.96 E-value=2.2 Score=53.14 Aligned_cols=122 Identities=15% Similarity=0.181 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh--hhHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002108 626 REKIQFCSTKMQELILYKSRCDNRLNEITERVS--GDKREV-------ELLAKKYEEKYKQSGDVASKLTLEEATFRDIQ 696 (965)
Q Consensus 626 ~eKi~~y~sKmQELq~~ksraeqeL~el~eeis--alKRev-------qsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ 696 (965)
++-++|++.+++++..+...++.+|++-+.+-. .+..+. ..|+.++.+-..+..+|...+....-.++.++
T Consensus 266 ~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~l~ 345 (719)
T PRK11519 266 SKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLL 345 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHH
Confidence 344567777777777776666666666543211 112222 22222222222222222222111111245555
Q ss_pred HHHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHHH---HHHHHHHHHhhCccc
Q 002108 697 EKKMELYQAILKME-GESGDGTLQQHADHIQNELEEL---VKILNDRCKQYGLRA 747 (965)
Q Consensus 697 ~K~~ELe~AL~~~~-~~~~n~~LKeri~~iNsel~eL---~K~l~E~~qq~Gl~~ 747 (965)
.++..|++++.+++ .-......+.++.++.++.+-. -..++.|+++..+..
T Consensus 346 ~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~i~~ 400 (719)
T PRK11519 346 EKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITE 400 (719)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 55556666555533 1112334555666666666633 366777888766554
No 274
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.94 E-value=2.7 Score=50.43 Aligned_cols=131 Identities=15% Similarity=0.160 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002108 615 VEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRD 694 (965)
Q Consensus 615 l~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqD 694 (965)
+..-+++..++.++|+.++.-+.+-........++...+..-+.....++..|.+.+|++.-.|..++.+|.-+...+-|
T Consensus 333 Ie~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~dd 412 (654)
T KOG4809|consen 333 IESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDD 412 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 33444566777777776665444433333333333344444444455566678888888888888888887766655443
Q ss_pred HH------HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccccccc
Q 002108 695 IQ------EKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQYGLRAKPTLLVE 754 (965)
Q Consensus 695 iQ------~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l~E~~qq~Gl~~K~~~~~E 754 (965)
++ .++.+|+.+... .+......+++.+.|+..+.|--+-|.=.-|..+..|
T Consensus 413 ar~~pe~~d~i~~le~e~~~---------y~de~~kaqaevdrlLeilkeveneKnDkdkkiaele 469 (654)
T KOG4809|consen 413 ARMNPEFADQIKQLEKEASY---------YRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELE 469 (654)
T ss_pred hhcChhhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcC
Confidence 32 345555555555 5555555666666666555544444444444445444
No 275
>PF13514 AAA_27: AAA domain
Probab=93.94 E-value=2.5 Score=55.07 Aligned_cols=69 Identities=20% Similarity=0.243 Sum_probs=33.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC----------------CCchHHHHHHHHHHHHHHHHHHHHH
Q 002108 676 KQSGDVASKLTLEEATFRDIQEKKMELYQAILKME-GES----------------GDGTLQQHADHIQNELEELVKILND 738 (965)
Q Consensus 676 KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~-~~~----------------~n~~LKeri~~iNsel~eL~K~l~E 738 (965)
.++..+..++..++..+..++.++..|++++..+. +.. .-...+.++..++.++..+...+.+
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~~~~~ 321 (1111)
T PF13514_consen 242 ERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEAELAELEAELRA 321 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555554433 111 1122334444555555555555566
Q ss_pred HHHhhC
Q 002108 739 RCKQYG 744 (965)
Q Consensus 739 ~~qq~G 744 (965)
.++++|
T Consensus 322 ~~~~lg 327 (1111)
T PF13514_consen 322 LLAQLG 327 (1111)
T ss_pred HHHhcC
Confidence 666666
No 276
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.92 E-value=2.5 Score=52.51 Aligned_cols=43 Identities=14% Similarity=0.009 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 666 LLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 666 sLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
+++.++++-+..++.++-+|+.+|-+-+-|-.-+.+-.+.+..
T Consensus 498 rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~R 540 (861)
T PF15254_consen 498 RIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIER 540 (861)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHH
Confidence 5667777777777777777777665555555444444444444
No 277
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=93.90 E-value=2 Score=48.46 Aligned_cols=54 Identities=11% Similarity=0.088 Sum_probs=22.8
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002108 650 LNEITERVSGDKREVELLAKKYEEKY---KQSGDVASKLTLEEATFRDIQEKKMELY 703 (965)
Q Consensus 650 L~el~eeisalKRevqsLr~eyEee~---KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe 703 (965)
+...+.++...++++++.+.-|++.. .++.+.+.++..++++++.++.++..+.
T Consensus 123 i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~a~~~~~~~~ 179 (346)
T PRK10476 123 VERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQALLQAQAAA 179 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555444443332 2233333334444444444444444333
No 278
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.89 E-value=1.1 Score=56.94 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 637 QELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQ-------SGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 637 QELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQ-------v~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
.+++.+....+.+|.-..-++..+||.+..++.+++..... +.+++..|...|.++++|+.++++++..+-+
T Consensus 679 ~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~ 757 (1141)
T KOG0018|consen 679 SSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFK 757 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444555554444444333332 3344445555666677777777777777666
No 279
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.87 E-value=0.79 Score=49.05 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002108 611 ADKKVEELEKEILTSREK 628 (965)
Q Consensus 611 a~kKl~eaE~ei~~~~eK 628 (965)
.++++++++.++.+..++
T Consensus 98 le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 445555555555554444
No 280
>PRK09343 prefoldin subunit beta; Provisional
Probab=93.87 E-value=1.8 Score=42.64 Aligned_cols=37 Identities=8% Similarity=0.105 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 002108 617 ELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEI 653 (965)
Q Consensus 617 eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el 653 (965)
+.-.++..+++++..+..+.+.+..++.+++.-++++
T Consensus 11 ~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL 47 (121)
T PRK09343 11 AQLAQLQQLQQQLERLLQQKSQIDLELREINKALEEL 47 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555555555555555554444444
No 281
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=93.85 E-value=1.5 Score=43.61 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002108 718 LQQHADHIQNELEELVKILNDRC 740 (965)
Q Consensus 718 LKeri~~iNsel~eL~K~l~E~~ 740 (965)
|++.|..++.+++++...+.+..
T Consensus 113 l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 113 LEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333333
No 282
>PF15294 Leu_zip: Leucine zipper
Probab=93.73 E-value=1.4 Score=49.24 Aligned_cols=86 Identities=17% Similarity=0.211 Sum_probs=58.3
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Q 002108 648 NRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGES-GDGTLQQHADHIQ 726 (965)
Q Consensus 648 qeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~-~n~~LKeri~~iN 726 (965)
++|..+...++.++.+++ +...+..++.+.|+..|..+.+.+-..|.++...+.+|.+.-.+. .-.++|+=+..-|
T Consensus 190 q~l~dLE~k~a~lK~e~e---k~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn 266 (278)
T PF15294_consen 190 QDLSDLENKMAALKSELE---KALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKN 266 (278)
T ss_pred cchhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhcc
Confidence 345555555555554444 234455567778888899999999999999887777777744333 3466777777778
Q ss_pred HHHHHHHHHH
Q 002108 727 NELEELVKIL 736 (965)
Q Consensus 727 sel~eL~K~l 736 (965)
.++.+|.|.+
T Consensus 267 ~QiKeLRkrl 276 (278)
T PF15294_consen 267 EQIKELRKRL 276 (278)
T ss_pred HHHHHHHHHh
Confidence 8888877654
No 283
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=93.72 E-value=3.4 Score=46.79 Aligned_cols=92 Identities=13% Similarity=0.160 Sum_probs=46.3
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCC
Q 002108 639 LILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVA--SKLTLEE--ATFRDIQEKKMELYQAILKMEGESG 714 (965)
Q Consensus 639 Lq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLE--sqLa~~E--a~LqDiQ~K~~ELe~AL~~~~~~~~ 714 (965)
|...+.++...|.+.+..|.+++++|+.|+.+|+.-.+++.+-. ..-...+ ..+.++..++.++..+|..
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~------ 145 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAV------ 145 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 44455555555565555566666666666555543211111110 0011111 2255777777777777777
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 002108 715 DGTLQQHADHIQNELEELVKILNDR 739 (965)
Q Consensus 715 n~~LKeri~~iNsel~eL~K~l~E~ 739 (965)
.++++++.......+.+++++.
T Consensus 146 ---~~~~l~q~~~k~~~~q~~l~~~ 167 (301)
T PF06120_consen 146 ---AQERLEQMQSKASETQATLNDL 167 (301)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554443
No 284
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=93.69 E-value=6 Score=41.12 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=22.3
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 002108 648 NRLNEITERVSGDKREVELLAKKYEEKYKQS 678 (965)
Q Consensus 648 qeL~el~eeisalKRevqsLr~eyEee~KQv 678 (965)
.++.+++.+...++++++.|+.++.+++.++
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l 103 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQELREEINKL 103 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777778888888887777776555
No 285
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.63 E-value=1.4 Score=52.01 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=14.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 679 GDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 679 ~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
+.|+..|...|.+++-||++..+|..+|.+
T Consensus 333 ~kl~~eie~kEeei~~L~~~~d~L~~q~~k 362 (622)
T COG5185 333 EKLKSEIELKEEEIKALQSNIDELHKQLRK 362 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 344444444555555555555555555444
No 286
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=93.56 E-value=6 Score=41.24 Aligned_cols=50 Identities=24% Similarity=0.227 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 690 ATFRDIQEKKMELYQAILKME-GESGDGTLQQHADHIQNELEELVKILNDRCK 741 (965)
Q Consensus 690 a~LqDiQ~K~~ELe~AL~~~~-~~~~n~~LKeri~~iNsel~eL~K~l~E~~q 741 (965)
..+++.+.|.+||...+.++. ... .+.=.-+.+++.+++++.+.+-|.+|
T Consensus 85 d~inE~t~k~~El~~~i~el~~~~~--Ks~~~~l~q~~~~~eEtv~~~ieqqk 135 (165)
T PF09602_consen 85 DSINEWTDKLNELSAKIQELLLSPS--KSSFSLLSQISKQYEETVKQLIEQQK 135 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchH--HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344455555555555554422 111 23444567788888887766655555
No 287
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.55 E-value=2 Score=53.58 Aligned_cols=120 Identities=17% Similarity=0.124 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHH-------HHHHHHHHHHHHHHHHHHHhH---HHH
Q 002108 618 LEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKRE-------VELLAKKYEEKYKQSGDVASK---LTL 687 (965)
Q Consensus 618 aE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRe-------vqsLr~eyEee~KQv~eLEsq---La~ 687 (965)
+..++.+.+...+.+....+++.......+.+...++.+|.+.|-. +..|+.+.=.-.|||..|.+. ..-
T Consensus 46 ~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~ 125 (717)
T PF09730_consen 46 LRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEG 125 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3333344444444444444444443333333333333333333332 223333333334777777555 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH-HHHH-HHHHHHHHHHHhhCccc
Q 002108 688 EEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQ-NELE-ELVKILNDRCKQYGLRA 747 (965)
Q Consensus 688 ~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iN-sel~-eL~K~l~E~~qq~Gl~~ 747 (965)
..+.++.+.+.+.-|..+|.. + .|++.|- .+|+ .|+-+..||=|++-|+-
T Consensus 126 ~Khei~rl~Ee~~~l~~qlee---------~-~rLk~iae~qleEALesl~~EReqk~~Lrk 177 (717)
T PF09730_consen 126 LKHEIKRLEEEIELLNSQLEE---------A-ARLKEIAEKQLEEALESLKSEREQKNALRK 177 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777776 1 2233332 4555 44466667767666654
No 288
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=93.53 E-value=8.6 Score=41.29 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=14.3
Q ss_pred CCchHHHHHHHHHHHHHHHH
Q 002108 714 GDGTLQQHADHIQNELEELV 733 (965)
Q Consensus 714 ~n~~LKeri~~iNsel~eL~ 733 (965)
+|..|++++..+-.++..|.
T Consensus 164 EN~~L~k~L~~l~~e~~~L~ 183 (206)
T PF14988_consen 164 ENQQLRKELLQLIQEAQKLE 183 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777776
No 289
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=93.52 E-value=2.2 Score=51.80 Aligned_cols=122 Identities=23% Similarity=0.273 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002108 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATF 692 (965)
Q Consensus 613 kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~L 692 (965)
.|+.++|.-|..-++|+..-+..+|+--+-. .++..++-.|..||..|+-+|-...|...+.|.++..+|+-+
T Consensus 139 EKIrDLE~cie~kr~kLnatEEmLQqellsr-------tsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~ 211 (861)
T KOG1899|consen 139 EKIRDLETCIEEKRNKLNATEEMLQQELLSR-------TSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLM 211 (861)
T ss_pred hhHHHHHHHHHHHHhhhchHHHHHHHHHHhh-------hhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHH
Confidence 4678888888888888776555555422222 233344445666666666555555566666666666666665
Q ss_pred HHH-HHHHHHHHHHHHHHh-----cCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 693 RDI-QEKKMELYQAILKME-----GESGDGTLQQHADHIQNELEELVKILNDRCK 741 (965)
Q Consensus 693 qDi-Q~K~~ELe~AL~~~~-----~~~~n~~LKeri~~iNsel~eL~K~l~E~~q 741 (965)
+.+ |.|+.+|.++-.+-+ -+.+-+.|||+..+-|.|..-|...+.-+..
T Consensus 212 qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~ 266 (861)
T KOG1899|consen 212 QEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLM 266 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 555 455555555544423 3335577888777777776666544443333
No 290
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=2.4 Score=42.07 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHH
Q 002108 629 IQFCSTKMQELILYKSRCDNRLNEIT 654 (965)
Q Consensus 629 i~~y~sKmQELq~~ksraeqeL~el~ 654 (965)
...|+.+++.+.++|...+.+|+++.
T Consensus 15 ~QqLq~ql~~~~~qk~~le~qL~E~~ 40 (119)
T COG1382 15 LQQLQQQLQKVILQKQQLEAQLKEIE 40 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555543
No 291
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=93.48 E-value=3.2 Score=40.39 Aligned_cols=86 Identities=8% Similarity=0.108 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002108 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 690 (965)
Q Consensus 611 a~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea 690 (965)
.+.++..++..|.+.+-..+.|.++..+|.........+......+|.+++++|..+++.++.+.-..-+|+..+.-++.
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~ 93 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555444444444444445444444444455556666666777777776776643322366666555554
Q ss_pred HHHHHH
Q 002108 691 TFRDIQ 696 (965)
Q Consensus 691 ~LqDiQ 696 (965)
...-++
T Consensus 94 dka~le 99 (107)
T PF09304_consen 94 DKAILE 99 (107)
T ss_dssp HHHHHH
T ss_pred hhhHHH
Confidence 433333
No 292
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.45 E-value=3.8 Score=46.40 Aligned_cols=111 Identities=21% Similarity=0.258 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----
Q 002108 614 KVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE---- 689 (965)
Q Consensus 614 Kl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~E---- 689 (965)
+..++..+.-.+..++..++++...+...+.....+++.+. ..+..+++|..+++..-|.+.+-...+...|
T Consensus 30 k~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~----~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR 105 (309)
T PF09728_consen 30 KYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAI----LAKSKLESLCRELQKQNKKLKEESKRRAREEEEKR 105 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444455555555555554444444332 3444455554444444444433222222211
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 002108 690 --------ATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE 730 (965)
Q Consensus 690 --------a~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~ 730 (965)
..|.||+.++.+-...-.+ ...+|..|++++..+-.+|+
T Consensus 106 ~el~~kFq~~L~dIq~~~ee~~~~~~k--~~~eN~~L~eKlK~l~eQye 152 (309)
T PF09728_consen 106 KELSEKFQATLKDIQAQMEEQSERNIK--LREENEELREKLKSLIEQYE 152 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3455666655544433333 33467888888887776665
No 293
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.41 E-value=6.5 Score=47.86 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 002108 718 LQQHADHIQNELEELV 733 (965)
Q Consensus 718 LKeri~~iNsel~eL~ 733 (965)
|..+=.+.+..+..|.
T Consensus 405 L~~dE~~Ar~~l~~~~ 420 (560)
T PF06160_consen 405 LRKDEKEAREKLQKLK 420 (560)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333334444444
No 294
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.40 E-value=5.6 Score=42.84 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=13.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002108 716 GTLQQHADHIQNELEELVKILNDRCKQ 742 (965)
Q Consensus 716 ~~LKeri~~iNsel~eL~K~l~E~~qq 742 (965)
.+|.+.+++-..+.++|.|.--|-.-+
T Consensus 178 ~SLe~~LeQK~kEn~ELtkICDeLI~k 204 (207)
T PF05010_consen 178 QSLEESLEQKTKENEELTKICDELISK 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444444333
No 295
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.40 E-value=4.1 Score=44.65 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 002108 636 MQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK 684 (965)
Q Consensus 636 mQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsq 684 (965)
...|..+..+++.+-..+..+...+..+.++|+.+-....+....|+.+
T Consensus 35 a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e 83 (246)
T PF00769_consen 35 AEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQE 83 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344444444443333333333333333
No 296
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=93.36 E-value=0.19 Score=42.78 Aligned_cols=47 Identities=21% Similarity=0.281 Sum_probs=38.0
Q ss_pred cccHHHHHHHHHhcC--CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Q 002108 26 QISGAEAVAFFQGSN--LPKQVLAQVWSHADQRKAGFLNRAEFFNALKL 72 (965)
Q Consensus 26 kISg~Ea~~ff~~Sg--Lp~~~LaqIW~LaD~d~DG~LdreEF~vAm~L 72 (965)
|++-.|++.||+.-+ +++..+..+|..+|.+++|.|+.+||..-.+.
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 467889999999876 66777999999999999999999999876654
No 297
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=93.35 E-value=0.055 Score=58.74 Aligned_cols=62 Identities=24% Similarity=0.357 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcC-----CCCHHHHHHHHHHhcCCCCCccCHHHHHH
Q 002108 436 SEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSW-----RLPREVLKQVWDLSDQDNDGMLSLKEFCT 497 (965)
Q Consensus 436 eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~ks-----~Lp~eeL~~IW~LaD~D~DGkLs~dEFvv 497 (965)
.-..++..+|.+.|.|.||+|+..|++..+++- .-..++-+..|+.+|.|+||.++++||.+
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykv 164 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKV 164 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhh
Confidence 346789999999999999999999998877531 22244556678899999999999999974
No 298
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.33 E-value=1.3 Score=47.89 Aligned_cols=12 Identities=33% Similarity=0.429 Sum_probs=4.4
Q ss_pred hHHHHHHHHHHH
Q 002108 660 DKREVELLAKKY 671 (965)
Q Consensus 660 lKRevqsLr~ey 671 (965)
+..++++|+.+|
T Consensus 154 L~~eleele~e~ 165 (290)
T COG4026 154 LLKELEELEAEY 165 (290)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 299
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=93.33 E-value=1.5 Score=41.81 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 002108 622 ILTSREKIQFCSTKMQELILYKSRCDNRLNEI 653 (965)
Q Consensus 622 i~~~~eKi~~y~sKmQELq~~ksraeqeL~el 653 (965)
+..+++++..+..+.+.|.....+|..-++++
T Consensus 8 ~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL 39 (105)
T cd00632 8 LQQLQQQLQAYIVQRQKVEAQLNENKKALEEL 39 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555444434333
No 300
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.31 E-value=1.7 Score=52.65 Aligned_cols=90 Identities=19% Similarity=0.250 Sum_probs=50.0
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 002108 648 NRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE---EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADH 724 (965)
Q Consensus 648 qeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~---Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~ 724 (965)
++|+++.+|+..+++-..+-...+++-....+.++.+|+.. +..+..++.+...+++++.+ +=+.+..
T Consensus 297 ~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~---------~A~~Ls~ 367 (557)
T COG0497 297 NRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLE---------AAEALSA 367 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---------HHHHHHH
Confidence 35666666666655544443333333333334443333332 23355666666666666665 5555555
Q ss_pred HHHHHH-HHHHHHHHHHHhhCcc
Q 002108 725 IQNELE-ELVKILNDRCKQYGLR 746 (965)
Q Consensus 725 iNsel~-eL~K~l~E~~qq~Gl~ 746 (965)
+..++. +|.|.+.+-.|.++|.
T Consensus 368 ~R~~~A~~L~~~v~~eL~~L~Me 390 (557)
T COG0497 368 IRKKAAKELEKEVTAELKALAME 390 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Confidence 665555 6777777777877775
No 301
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.23 E-value=4.6 Score=47.86 Aligned_cols=80 Identities=15% Similarity=0.219 Sum_probs=42.4
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 002108 600 SLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSG 679 (965)
Q Consensus 600 ~Lns~~qeaeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~ 679 (965)
.|-++.+++.+++.++..++..-..++....-|..-+..+..+..+--+.|..++.+|..-+.+|+.|+..++.-.+|+.
T Consensus 282 ~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 282 NLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34444555555555555555444444444444444444444455544455556666666666666666666655555544
No 302
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=93.22 E-value=6.7 Score=42.69 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=24.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 002108 679 GDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV 733 (965)
Q Consensus 679 ~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~ 733 (965)
..|++.+...+..+..+..+...|+..+.+ |..+|.++....+.|+
T Consensus 95 ~~le~~~~~~~~~~~~~~~~~~~l~~~~~~---------Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 95 QSLEDLAKALEAELQQAEEQVEKLKKQLAA---------LEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
Confidence 444444444455555555555555555555 5555555555555554
No 303
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=93.21 E-value=1.3 Score=45.79 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=46.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002108 677 QSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQY 743 (965)
Q Consensus 677 Qv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l~E~~qq~ 743 (965)
+...++......+..+..++.++.+|+..+.+ |++++..++.+|..|.+....+|+-.
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~---------L~~~~~~~~eDY~~L~~Im~RARkl~ 155 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEK---------LRQRLSTIEEDYQTLIDIMDRARKLA 155 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666778888888888888888 99999999999999999988888743
No 304
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.18 E-value=3.8 Score=49.55 Aligned_cols=63 Identities=11% Similarity=0.060 Sum_probs=30.9
Q ss_pred HHHHHHHHhhCCCCCCc-ccH-HHHHHHHHcCCCCH-HHHHHHHHHhcCCCCCccCHHHHHHHHH-HHHHHhc
Q 002108 439 QKYTKVFVQVDIDRDGK-ITG-EQAYNLFLSWRLPR-EVLKQVWDLSDQDNDGMLSLKEFCTALY-LMERYRE 507 (965)
Q Consensus 439 ~ry~~~F~~lDkD~dG~-ISg-~Elr~~f~ks~Lp~-eeL~~IW~LaD~D~DGkLs~dEFvvAM~-LI~~~~~ 507 (965)
.-|+-+|..+|.+- ++ +.. +|+..||...+.|= ..+-.+... .+-=+|.-|+.++| ||.+.+-
T Consensus 107 ~iFkfLY~~Ldp~y-~f~~r~EeEV~~ilK~L~YPf~~siSs~~a~-----gspH~WP~iL~mlhWlvdlI~~ 173 (581)
T KOG0995|consen 107 AIFKFLYGFLDPDY-EFPERIEEEVVQILKNLKYPFLLSISSLQAA-----GSPHNWPHILGMLHWLVDLIRI 173 (581)
T ss_pred HHHHHHHhccCCCc-ccchhHHHHHHHHHHhCCCCcccchhhhccC-----CCCCccHHHHHHHHHHHHHHHH
Confidence 44555555666542 22 332 45777777666551 111111111 12235777777766 4544443
No 305
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=93.14 E-value=8.4 Score=40.99 Aligned_cols=13 Identities=15% Similarity=0.483 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 002108 718 LQQHADHIQNELE 730 (965)
Q Consensus 718 LKeri~~iNsel~ 730 (965)
.|.|+++|+++|.
T Consensus 149 Ak~Rve~L~~QL~ 161 (188)
T PF05335_consen 149 AKRRVEELQRQLQ 161 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555554444
No 306
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=93.11 E-value=4.7 Score=43.23 Aligned_cols=53 Identities=8% Similarity=0.068 Sum_probs=36.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 656 RVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 656 eisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
++......++.|+..|+....++..|+.+|...+..+..++.+...|.+....
T Consensus 93 ~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~ 145 (219)
T TIGR02977 93 EKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQA 145 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666777777777788888888888887777777777766555544
No 307
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.08 E-value=12 Score=40.05 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=13.7
Q ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 599 ESLNAKLKEATEADKKVEELEKEILTSREKIQFC 632 (965)
Q Consensus 599 ~~Lns~~qeaeEa~kKl~eaE~ei~~~~eKi~~y 632 (965)
..|.......+|...+|. .+|.+++.++..+
T Consensus 25 ~kL~~~ve~~ee~na~L~---~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 25 AKLQRSVETAEEGNAQLA---EEITDLRKQLKSL 55 (193)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 344443333444444332 3455555555444
No 308
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=93.04 E-value=7.9 Score=36.34 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002108 692 FRDIQEKKMELYQAILK 708 (965)
Q Consensus 692 LqDiQ~K~~ELe~AL~~ 708 (965)
...|+.++..|+..+..
T Consensus 74 ~~~l~~q~~~l~~~l~~ 90 (127)
T smart00502 74 LKVLEQQLESLTQKQEK 90 (127)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555555
No 309
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=93.04 E-value=0.075 Score=57.78 Aligned_cols=65 Identities=25% Similarity=0.390 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Q 002108 438 VQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLM 502 (965)
Q Consensus 438 k~ry~~~F~~lDkD~dG~ISg~Elr~~f--~ks~Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI 502 (965)
+.+.+++=..+|.|+||.+|.+|+..++ +...+...++..|+.+.|.+++.+|+++|.+..-+|.
T Consensus 280 kdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r~~~~ 346 (362)
T KOG4251|consen 280 KDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLERDWLL 346 (362)
T ss_pred HHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHHHhhh
Confidence 3444554556799999999999999998 5667888899999999999999999999987544443
No 310
>PRK10869 recombination and repair protein; Provisional
Probab=93.01 E-value=3.4 Score=50.20 Aligned_cols=85 Identities=18% Similarity=0.226 Sum_probs=53.4
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHH----HHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHH
Q 002108 649 RLNEITERVSGDKREVELLAKKY----EEKYKQSGDVASKLTLEE---ATFRDIQEKKMELYQAILKMEGESGDGTLQQH 721 (965)
Q Consensus 649 eL~el~eeisalKRevqsLr~ey----Eee~KQv~eLEsqLa~~E---a~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKer 721 (965)
+|.++.+|+.. |..|..+| ++.+....+++.+|...+ ..+..++.++.++...+.+ +-++
T Consensus 297 ~l~~ie~Rl~~----l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~---------~A~~ 363 (553)
T PRK10869 297 RLAELEQRLSK----QISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALE---------TAQK 363 (553)
T ss_pred HHHHHHHHHHH----HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH---------HHHH
Confidence 34555444433 33444444 344444455555554433 4577777777777777777 6667
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhhCcc
Q 002108 722 ADHIQNELE-ELVKILNDRCKQYGLR 746 (965)
Q Consensus 722 i~~iNsel~-eL~K~l~E~~qq~Gl~ 746 (965)
+.....+.. .|.+.+.+..+.+||.
T Consensus 364 LS~~R~~aA~~l~~~v~~~L~~L~m~ 389 (553)
T PRK10869 364 LHQSRQRYAKELAQLITESMHELSMP 389 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 777776655 7889999999999985
No 311
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=93.00 E-value=1.6 Score=40.31 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=43.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 657 VSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 657 isalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
+..+|.|++.|-.++..-..+..+++.+|...-..++.|++++.+|+.+..+
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~k 57 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRK 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777777777788888888888888999999999999999999
No 312
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=92.96 E-value=9.1 Score=42.85 Aligned_cols=74 Identities=16% Similarity=0.293 Sum_probs=42.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002108 637 QELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (965)
Q Consensus 637 QELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~ 710 (965)
++|-.+=..+++.|..+..++.-+--++..|...|-+.+-+....=..|...|..++.++.++..|..+|.+++
T Consensus 85 ~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk 158 (271)
T PF13805_consen 85 KQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLK 158 (271)
T ss_dssp HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHH
Confidence 33555555566666666666666666666666666555555544445555555555555555555555555554
No 313
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=92.96 E-value=2.3 Score=49.45 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHhhhhHHHHHHHHHHHHHHH------HHHHHH---Hh
Q 002108 614 KVEELEKEILTSREKIQFCSTKMQELILYKSRCDNR-LNEITERVSGDKREVELLAKKYEEKY------KQSGDV---AS 683 (965)
Q Consensus 614 Kl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqe-L~el~eeisalKRevqsLr~eyEee~------KQv~eL---Es 683 (965)
|+..+|++-..-++-++.||..+=+|..+....+.- .+.+=+++..|+.+--.|+++||+.+ .+|... .-
T Consensus 166 ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~g 245 (552)
T KOG2129|consen 166 KIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHG 245 (552)
T ss_pred HHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccC
Confidence 333344333333333444555444444443333222 24445666677777777888888876 233321 11
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHH
Q 002108 684 KLTLEE-ATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 684 qLa~~E-a~LqDiQ~K~~ELe~AL~~ 708 (965)
.-+..+ ..++-||+++.-|...|..
T Consensus 246 D~a~~~~~hi~~l~~EveRlrt~l~~ 271 (552)
T KOG2129|consen 246 DEAAAEKLHIDKLQAEVERLRTYLSR 271 (552)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333 3345558887777777766
No 314
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=92.94 E-value=3.3 Score=46.00 Aligned_cols=26 Identities=8% Similarity=0.146 Sum_probs=11.6
Q ss_pred hhhhhHHHHHHhhhhHHHHHHHHHHH
Q 002108 646 CDNRLNEITERVSGDKREVELLAKKY 671 (965)
Q Consensus 646 aeqeL~el~eeisalKRevqsLr~ey 671 (965)
.+.++...+.++...+.++++.+.-|
T Consensus 113 ~~~~~~~a~~~l~~a~~~~~r~~~L~ 138 (334)
T TIGR00998 113 LKIKLEQAREKLLQAELDLRRRVPLF 138 (334)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33334444444444555555544333
No 315
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=92.94 E-value=5.4 Score=43.70 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 002108 685 LTLEEATFRDIQEKKM 700 (965)
Q Consensus 685 La~~Ea~LqDiQ~K~~ 700 (965)
|..-++.|+|++.-++
T Consensus 187 L~~~~~kL~Dl~~~l~ 202 (264)
T PF06008_consen 187 LNDYNAKLQDLRDLLN 202 (264)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444443333
No 316
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=92.92 E-value=0.65 Score=52.91 Aligned_cols=84 Identities=18% Similarity=0.282 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHH
Q 002108 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKK-YEEKYKQSGDVASKLTLEEAT 691 (965)
Q Consensus 613 kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~e-yEee~KQv~eLEsqLa~~Ea~ 691 (965)
+...++++|..++++.-..|..|++|+..-...|...++.-+.++.+++..++++++. -.++.+.+++|+++|...+..
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~ 83 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQ 83 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhh
Confidence 3355666777777777788999999999999999888877777777777777777543 223344455555555444444
Q ss_pred HHHHH
Q 002108 692 FRDIQ 696 (965)
Q Consensus 692 LqDiQ 696 (965)
+.|++
T Consensus 84 l~DmE 88 (330)
T PF07851_consen 84 LFDME 88 (330)
T ss_pred HHHHH
Confidence 54444
No 317
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.90 E-value=4.6 Score=51.59 Aligned_cols=55 Identities=31% Similarity=0.342 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHH
Q 002108 614 KVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLA 668 (965)
Q Consensus 614 Kl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr 668 (965)
+..++++++.+..+++.....-+-+.........+.|+++..++.+.+..++.|+
T Consensus 277 ~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk 331 (1072)
T KOG0979|consen 277 KKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLK 331 (1072)
T ss_pred hhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333333334444444444444444444433
No 318
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=92.87 E-value=1.1 Score=52.49 Aligned_cols=95 Identities=14% Similarity=0.129 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 630 QFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQS-GDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 630 ~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv-~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
..|+.++..+.........++.....++..++.+++.++..+.++.+++ ..+...+..++.+.+.|..++..++.++..
T Consensus 288 ~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~ 367 (458)
T COG3206 288 QDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSK 367 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444443444444445556666777777777777776666 333344444555555555555555555544
Q ss_pred HhcCCCCchHHHHHHHHHHHHH
Q 002108 709 MEGESGDGTLQQHADHIQNELE 730 (965)
Q Consensus 709 ~~~~~~n~~LKeri~~iNsel~ 730 (965)
...++.+++++.+|++
T Consensus 368 ------~~~~~~~l~~L~Re~~ 383 (458)
T COG3206 368 ------LPKLQVQLRELEREAE 383 (458)
T ss_pred ------chHhhhHHHHHHHHHH
Confidence 3445555555555555
No 319
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.84 E-value=3.8 Score=44.91 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=7.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 679 GDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 679 ~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
..|+.+....+.....|..++.+++..+..
T Consensus 64 ~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~ 93 (246)
T PF00769_consen 64 QRLEEEAEMQEEEKEQLEQELREAEAEIAR 93 (246)
T ss_dssp HHHHH------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444
No 320
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.84 E-value=8.5 Score=47.09 Aligned_cols=17 Identities=35% Similarity=0.476 Sum_probs=9.1
Q ss_pred ccccccCCCCCCcccccccch
Q 002108 751 LLVELPFGWQPGIQEGTADWD 771 (965)
Q Consensus 751 ~~~E~~~g~~~~~qe~a~~w~ 771 (965)
++-++=||= =+.|-+||
T Consensus 355 iLk~ief~~----se~a~~~~ 371 (629)
T KOG0963|consen 355 ILKAIEFGD----SEEANDED 371 (629)
T ss_pred HHHHhhcCC----cccccccc
Confidence 555555542 25566665
No 321
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.82 E-value=7.1 Score=48.14 Aligned_cols=45 Identities=29% Similarity=0.223 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhhHHH
Q 002108 609 TEADKKVEELEKEILTSREKIQ---FCSTKMQELILYKSRCDNRLNEI 653 (965)
Q Consensus 609 eEa~kKl~eaE~ei~~~~eKi~---~y~sKmQELq~~ksraeqeL~el 653 (965)
|..+||.-.-.+.|-.+|.|+. .+..|..+++...+...++|+.+
T Consensus 463 EkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~i 510 (961)
T KOG4673|consen 463 EKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSI 510 (961)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3344444444455555555553 23344444444444444444433
No 322
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.79 E-value=6.4 Score=40.67 Aligned_cols=106 Identities=19% Similarity=0.216 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002108 623 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMEL 702 (965)
Q Consensus 623 ~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~EL 702 (965)
..+.+||+.-...+..|.......-+-|..+++.+..+..+++.++.++.+....+..+...|..++.....+..++..|
T Consensus 52 ~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 52 QQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555444445555555555555555566666666666666666665555555555555555544444444444433
Q ss_pred HHHHHHHhcCC-CCchHHHHHHHHHHHHHHHH
Q 002108 703 YQAILKMEGES-GDGTLQQHADHIQNELEELV 733 (965)
Q Consensus 703 e~AL~~~~~~~-~n~~LKeri~~iNsel~eL~ 733 (965)
..+ ++. ....|=........++.+|+
T Consensus 132 ~~~-----~~~~~~P~ll~Dy~~~~~~~~~l~ 158 (177)
T PF13870_consen 132 RQQ-----GGLLGVPALLRDYDKTKEEVEELR 158 (177)
T ss_pred HHh-----cCCCCCcHHHHHHHHHHHHHHHHH
Confidence 222 222 33444444444444444444
No 323
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=92.78 E-value=5.2 Score=45.52 Aligned_cols=120 Identities=13% Similarity=0.053 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHH---------HhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002108 628 KIQFCSTKMQELILYKSRCDNRLNEITE---------RVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEK 698 (965)
Q Consensus 628 Ki~~y~sKmQELq~~ksraeqeL~el~e---------eisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K 698 (965)
.++|++.++.++..+...++.+|.+-+. +....-..+..|+.++.+...++.++........-.++.++.+
T Consensus 171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~ 250 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQAR 250 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHH
Confidence 3345555555555555555544444422 1112222333344333333333333332211111225566666
Q ss_pred HHHHHHHHHHHh----cC--CCCchHHHHHHHHHHHHHHHH---HHHHHHHHhhCccc
Q 002108 699 KMELYQAILKME----GE--SGDGTLQQHADHIQNELEELV---KILNDRCKQYGLRA 747 (965)
Q Consensus 699 ~~ELe~AL~~~~----~~--~~n~~LKeri~~iNsel~eL~---K~l~E~~qq~Gl~~ 747 (965)
+.+|+++|.+.. +. .....+..+.+++..+++-.+ ..+..+.++..+.+
T Consensus 251 i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~ 308 (362)
T TIGR01010 251 IKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEA 308 (362)
T ss_pred HHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666522 11 111223334445555554322 45555666665554
No 324
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=92.78 E-value=9.8 Score=41.02 Aligned_cols=54 Identities=15% Similarity=0.282 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002108 636 MQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE 689 (965)
Q Consensus 636 mQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~E 689 (965)
..++...+.++...+..+...+....++++..+++|+..+++...+..++..++
T Consensus 100 ~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~ 153 (251)
T cd07653 100 ISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKAD 153 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445566666677777777778888888888888888888877776665544
No 325
>PRK12705 hypothetical protein; Provisional
Probab=92.74 E-value=11 Score=45.57 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=19.7
Q ss_pred HHHHHHHHhhCccc---cccccccccCCCCCC
Q 002108 734 KILNDRCKQYGLRA---KPTLLVELPFGWQPG 762 (965)
Q Consensus 734 K~l~E~~qq~Gl~~---K~~~~~E~~~g~~~~ 762 (965)
+.+..+.|++--.. +-++.|.||-.|+.|
T Consensus 180 ~ii~~aiqr~a~~~~~e~tvs~v~lp~demkG 211 (508)
T PRK12705 180 NILAQAMQRIASETASDLSVSVVPIPSDAMKG 211 (508)
T ss_pred HHHHHHHHHhccchhhhheeeeeecCChHhhc
Confidence 44556666665333 666899999988765
No 326
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.74 E-value=4.1 Score=49.49 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 002108 694 DIQEKKMELYQAILK 708 (965)
Q Consensus 694 DiQ~K~~ELe~AL~~ 708 (965)
.|+..+.++...|.+
T Consensus 376 ~i~~~l~~~~~~l~~ 390 (560)
T PF06160_consen 376 EIQEELEEIEEQLEE 390 (560)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444444
No 327
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.65 E-value=4.7 Score=48.56 Aligned_cols=24 Identities=4% Similarity=0.127 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 685 LTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 685 La~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
|...|+.|+++++.+..+......
T Consensus 109 I~eleneLKq~r~el~~~q~E~er 132 (772)
T KOG0999|consen 109 ILELENELKQLRQELTNVQEENER 132 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554444443
No 328
>PRK10698 phage shock protein PspA; Provisional
Probab=92.63 E-value=6.8 Score=42.35 Aligned_cols=51 Identities=6% Similarity=-0.007 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 658 SGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 658 salKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
......+..|+.+|+....++..|+.+|...+..+.++++|+..|-+....
T Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~ 145 (222)
T PRK10698 95 QKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQA 145 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666777888888888888888888888888888888777766665
No 329
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=92.60 E-value=0.19 Score=51.26 Aligned_cols=55 Identities=27% Similarity=0.327 Sum_probs=46.3
Q ss_pred HHHhhCCCCCCcccHHHHHHHHH---hcCCCHHHHH----HHHHHhCCCCCCCcCHHHHHHH
Q 002108 15 YFRRADLDGDGQISGAEAVAFFQ---GSNLPKQVLA----QVWSHADQRKAGFLNRAEFFNA 69 (965)
Q Consensus 15 vF~~lD~D~DGkISg~Ea~~ff~---~SgLp~~~La----qIW~LaD~d~DG~LdreEF~vA 69 (965)
.|+++|-|+|+.|...++...+. +.+|+.+... +|..-+|.|+||.|+..||-..
T Consensus 113 AFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~ 174 (189)
T KOG0038|consen 113 AFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHV 174 (189)
T ss_pred eeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Confidence 48999999999999998877765 6789987654 5667799999999999999754
No 330
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=92.57 E-value=1.2 Score=54.18 Aligned_cols=67 Identities=10% Similarity=0.135 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002108 608 ATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVA 682 (965)
Q Consensus 608 aeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLE 682 (965)
+++...+....-.++. ..++++.|++++.+|...+-+.-.++. +.+++++.|+.+++..+.+++.+.
T Consensus 173 ~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~~~ik~p~~i~-------~~~~e~d~lk~e~~~~~~~i~~~~ 239 (555)
T TIGR03545 173 LKAMQQKWKKRKKDLP-NKQDLEEYKKRLEAIKKKDIKNPLELQ-------KIKEEFDKLKKEGKADKQKIKSAK 239 (555)
T ss_pred HHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHhccCCCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344 277888888888888775222222233 334444444444444444444433
No 331
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=92.56 E-value=7.2 Score=46.23 Aligned_cols=109 Identities=18% Similarity=0.153 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhHHH-------HHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHH
Q 002108 636 MQELILYKSRCDNRLNEITERVSGDKRE-------VELLAKKYEEKYK-------QSGDVASKLTLEEATFRDIQEKKME 701 (965)
Q Consensus 636 mQELq~~ksraeqeL~el~eeisalKRe-------vqsLr~eyEee~K-------Qv~eLEsqLa~~Ea~LqDiQ~K~~E 701 (965)
+|.|+.-....+..|.+.+.++..+.-+ +-.|+.+|-.++. +|-++...|...|..+..||.-+.+
T Consensus 392 lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkge 471 (527)
T PF15066_consen 392 LQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGE 471 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3334333333344444444333333333 3346666666654 4455555566666777777777777
Q ss_pred HHHHHH-HHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 002108 702 LYQAIL-KME-GESGDGTLQQHADHIQNELEELVKILNDRCKQYG 744 (965)
Q Consensus 702 Le~AL~-~~~-~~~~n~~LKeri~~iNsel~eL~K~l~E~~qq~G 744 (965)
|+.|.. +++ -.++-.+..++.=-++.|++.-+|..++-||++-
T Consensus 472 lEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLK 516 (527)
T PF15066_consen 472 LEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLK 516 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777663 322 2333333334444555666666666666565544
No 332
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=92.54 E-value=1.9 Score=48.19 Aligned_cols=38 Identities=13% Similarity=0.243 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHHHH
Q 002108 692 FRDIQEKKMELYQAILKME-GESGDGTLQQHADHIQNELEELV 733 (965)
Q Consensus 692 LqDiQ~K~~ELe~AL~~~~-~~~~n~~LKeri~~iNsel~eL~ 733 (965)
+++|-.|+.-|++-|+.|. |+. |=+||.++-++.+-|.
T Consensus 70 y~ema~~L~~LeavLqRir~G~~----LVekM~~YASDQEVLd 108 (324)
T PF12126_consen 70 YEEMAGQLGRLEAVLQRIRTGGA----LVEKMKLYASDQEVLD 108 (324)
T ss_pred HHHHHHHHhHHHHHHHHHHhHHH----HHHHHHHhcchHHHHH
Confidence 5677777888888888888 766 8899999998777554
No 333
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.49 E-value=4.4 Score=49.45 Aligned_cols=12 Identities=17% Similarity=0.385 Sum_probs=5.2
Q ss_pred HHHHHHHHHHhh
Q 002108 732 LVKILNDRCKQY 743 (965)
Q Consensus 732 L~K~l~E~~qq~ 743 (965)
|+-+|+++-+++
T Consensus 377 leslLl~knr~l 388 (629)
T KOG0963|consen 377 LESLLLEKNRKL 388 (629)
T ss_pred HHHHHHHHHhhh
Confidence 334444444443
No 334
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=92.48 E-value=13 Score=37.23 Aligned_cols=28 Identities=18% Similarity=0.457 Sum_probs=21.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002108 716 GTLQQHADHIQNELEELVKILNDRCKQY 743 (965)
Q Consensus 716 ~~LKeri~~iNsel~eL~K~l~E~~qq~ 743 (965)
..++.+++.++..+..|.....++++.+
T Consensus 182 ~~~~~~l~~l~~~~~~l~~~~~~~~~~L 209 (213)
T cd00176 182 EEIEEKLEELNERWEELLELAEERQKKL 209 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888888887777776654
No 335
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=92.44 E-value=8.7 Score=50.10 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 002108 718 LQQHADHIQNELEELVKILNDRCKQYGL 745 (965)
Q Consensus 718 LKeri~~iNsel~eL~K~l~E~~qq~Gl 745 (965)
+.+.+...+.++..+.+.+.++...+|+
T Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~L~~~~f 763 (1047)
T PRK10246 736 LQQQDVLEAQRLQKAQAQFDTALQASVF 763 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444443
No 336
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=92.42 E-value=5 Score=46.46 Aligned_cols=8 Identities=0% Similarity=0.156 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 002108 635 KMQELILY 642 (965)
Q Consensus 635 KmQELq~~ 642 (965)
.+.++..+
T Consensus 221 hleqm~~~ 228 (359)
T PF10498_consen 221 HLEQMKQH 228 (359)
T ss_pred HHHHHHHH
Confidence 33333333
No 337
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=92.40 E-value=4.7 Score=45.67 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=12.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 679 GDVASKLTLEEATFRDIQEKKMELYQAIL 707 (965)
Q Consensus 679 ~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~ 707 (965)
.++..+|+.++.++.+++++..+++..|.
T Consensus 137 a~~t~~L~~~~~~l~q~~~k~~~~q~~l~ 165 (301)
T PF06120_consen 137 AEATRELAVAQERLEQMQSKASETQATLN 165 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444443
No 338
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=92.36 E-value=0.36 Score=41.10 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=37.1
Q ss_pred cccHHHHHHHHHcCC--CCHHHHHHHHHHhcCCCCCccCHHHHHHHHHH
Q 002108 455 KITGEQAYNLFLSWR--LPREVLKQVWDLSDQDNDGMLSLKEFCTALYL 501 (965)
Q Consensus 455 ~ISg~Elr~~f~ks~--Lp~eeL~~IW~LaD~D~DGkLs~dEFvvAM~L 501 (965)
+++-+|++.+|+..+ +..+-...++..+|.+++|.|+.+||....+.
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 367789999997765 56777889999999999999999999866553
No 339
>PRK09343 prefoldin subunit beta; Provisional
Probab=92.30 E-value=2.7 Score=41.35 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 002108 618 LEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEI 653 (965)
Q Consensus 618 aE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el 653 (965)
+..++++...++..++.+++.+..++...+.+++++
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~ 40 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREI 40 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555656666666666666666666555555554
No 340
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=92.27 E-value=1.2 Score=40.33 Aligned_cols=61 Identities=21% Similarity=0.217 Sum_probs=35.9
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 648 NRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 648 qeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
..|.+-+++|+.|+.+-+.|...--.--..|+.|..++.+.|..+.++..++..++..+..
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~ 65 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELES 65 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777765544444445555555555555555555555555555555
No 341
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=92.27 E-value=1.6 Score=49.22 Aligned_cols=55 Identities=24% Similarity=0.310 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH---HHHHHHHHhhCccccc
Q 002108 686 TLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV---KILNDRCKQYGLRAKP 749 (965)
Q Consensus 686 a~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~---K~l~E~~qq~Gl~~K~ 749 (965)
.+.|..|.+++.++.+...+|.. +|..+++++.++++|+ +.+-+..+.+||+--+
T Consensus 122 ee~eE~~~~~~re~~eK~~elEr---------~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~ 179 (302)
T PF09738_consen 122 EELEETLAQLQREYREKIRELER---------QKRAHDSLREELDELREQLKQRDELIEKHGLVLVP 179 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCC
Confidence 33344455555555566666777 8888889998888888 5555667888887644
No 342
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=92.21 E-value=4.5 Score=46.97 Aligned_cols=25 Identities=4% Similarity=0.173 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 002108 719 QQHADHIQNELEELVKILNDRCKQY 743 (965)
Q Consensus 719 Keri~~iNsel~eL~K~l~E~~qq~ 743 (965)
++++..++.++.+++..+.++..++
T Consensus 226 ~~~~~~~~~~l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 226 EKELETVEARIKEARYEIEELENKL 250 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777776665555555544
No 343
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=92.19 E-value=1.8 Score=41.56 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 002108 622 ILTSREKIQFCSTKMQELILYKSRCDNRLNEI 653 (965)
Q Consensus 622 i~~~~eKi~~y~sKmQELq~~ksraeqeL~el 653 (965)
+.+..+++..|+.+++.+..++...+.++++.
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~ 36 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEA 36 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544444443
No 344
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=92.15 E-value=10 Score=42.83 Aligned_cols=111 Identities=12% Similarity=0.120 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002108 622 ILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKME 701 (965)
Q Consensus 622 i~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~E 701 (965)
+.+++...+.|..++.+.+.+....+.+|..+..-+.+----++.++..+.+..-++++++.-+-..++.+..--.|..-
T Consensus 139 ~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes 218 (305)
T PF14915_consen 139 VSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQES 218 (305)
T ss_pred HHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34455555566666666666666666666665554444444455566666666666666666555555555555555555
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Q 002108 702 LYQAILKMEGESGDGTLQQHADHIQNELEELVK 734 (965)
Q Consensus 702 Le~AL~~~~~~~~n~~LKeri~~iNsel~eL~K 734 (965)
|++.|.+ -+++|-.|++.++.....-+--+|
T Consensus 219 ~eERL~Q--lqsEN~LLrQQLddA~~K~~~kek 249 (305)
T PF14915_consen 219 LEERLSQ--LQSENMLLRQQLDDAHNKADNKEK 249 (305)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555 455556666666665544443333
No 345
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=92.15 E-value=7.5 Score=45.53 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=37.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Q 002108 656 RVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKI 735 (965)
Q Consensus 656 eisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~ 735 (965)
+.++.++.|+.|+.|++--.++++..|. ..+.|++++.+.-.. .+++..++++.|..-+..
T Consensus 247 ~a~~~~~hi~~l~~EveRlrt~l~~Aqk----------~~~ek~~qy~~Ee~~---------~reen~rlQrkL~~e~er 307 (552)
T KOG2129|consen 247 EAAAEKLHIDKLQAEVERLRTYLSRAQK----------SYQEKLMQYRAEEVD---------HREENERLQRKLINELER 307 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhh---------HHHHHHHHHHHHHHHHHH
Confidence 3456677777777777766666655332 234455544444444 444445555555433344
Q ss_pred HHHHHHhhC
Q 002108 736 LNDRCKQYG 744 (965)
Q Consensus 736 l~E~~qq~G 744 (965)
|..-|+++-
T Consensus 308 Realcr~ls 316 (552)
T KOG2129|consen 308 REALCRMLS 316 (552)
T ss_pred HHHHHHHhh
Confidence 444555544
No 346
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=92.13 E-value=2 Score=51.04 Aligned_cols=13 Identities=38% Similarity=0.565 Sum_probs=9.3
Q ss_pred ccccchhhhhccc
Q 002108 766 GTADWDEDWDKLE 778 (965)
Q Consensus 766 ~a~~w~e~w~~~~ 778 (965)
+...|.|.=|...
T Consensus 171 ~~~~Wv~P~D~~~ 183 (472)
T TIGR03752 171 GGVVWVEPQDALP 183 (472)
T ss_pred CceEeeccccccc
Confidence 5567888777663
No 347
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=92.11 E-value=0.24 Score=56.07 Aligned_cols=126 Identities=13% Similarity=0.159 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002108 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATF 692 (965)
Q Consensus 613 kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~L 692 (965)
..|..+|.-+.++++.+..+..++.+|..........|.+++.+|..+.-.|..|+..+++-...|..|...|...+..+
T Consensus 35 eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssI 114 (326)
T PF04582_consen 35 ERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSI 114 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhH
Confidence 34555666666666666666666666666655555556666666666666666666666666677778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH--HHHHHhhCccc
Q 002108 693 RDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKIL--NDRCKQYGLRA 747 (965)
Q Consensus 693 qDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l--~E~~qq~Gl~~ 747 (965)
-+||..++.++..+.. ||-.+..+--.+..|++-+ +|..--.+|.+
T Consensus 115 S~Lqs~v~~lsTdvsN---------LksdVSt~aL~ItdLe~RV~~LEs~~s~~l~f 162 (326)
T PF04582_consen 115 SDLQSSVSALSTDVSN---------LKSDVSTQALNITDLESRVKALESGSSSPLTF 162 (326)
T ss_dssp ---HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHTTTTTT-EE
T ss_pred HHHHHhhhhhhhhhhh---------hhhhhhhhcchHhhHHHHHHHHhcCCCCCcee
Confidence 8888888888888888 8888877777777777444 34554455544
No 348
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.11 E-value=0.26 Score=48.52 Aligned_cols=57 Identities=23% Similarity=0.398 Sum_probs=43.2
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhc------C-----C-CHHHHHHHH----HHhCCCCCCCcCHHHHHHHH
Q 002108 14 AYFRRADLDGDGQISGAEAVAFFQGS------N-----L-PKQVLAQVW----SHADQRKAGFLNRAEFFNAL 70 (965)
Q Consensus 14 ~vF~~lD~D~DGkISg~Ea~~ff~~S------g-----L-p~~~LaqIW----~LaD~d~DG~LdreEF~vAm 70 (965)
.+|.++|.|++++|+|-|+...+.-. | | ++..|..|. +--|-|+||+||..||.++.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhhc
Confidence 57999999999999999987776532 2 3 334455544 44577899999999999864
No 349
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=92.09 E-value=2.7 Score=46.90 Aligned_cols=78 Identities=19% Similarity=0.309 Sum_probs=47.8
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCchHHH---HHH
Q 002108 649 RLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME--GESGDGTLQQ---HAD 723 (965)
Q Consensus 649 eL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~--~~~~n~~LKe---ri~ 723 (965)
+|.+-..+|.+||-.+.+.|...=++ .|-.+|.+| .|+.++.+|.+|.+.+..|. -...|.-+|. .|+
T Consensus 83 ~l~dRetEI~eLksQL~RMrEDWIEE--ECHRVEAQL-----ALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDIN 155 (305)
T PF15290_consen 83 RLHDRETEIDELKSQLARMREDWIEE--ECHRVEAQL-----ALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDIN 155 (305)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhh
Confidence 34444455666666666666443222 255666666 45566677778888888877 3334677887 566
Q ss_pred HHHHHHHHHH
Q 002108 724 HIQNELEELV 733 (965)
Q Consensus 724 ~iNsel~eL~ 733 (965)
.+|.+|+-|+
T Consensus 156 iQN~KLEsLL 165 (305)
T PF15290_consen 156 IQNKKLESLL 165 (305)
T ss_pred hhHhHHHHHH
Confidence 6666666554
No 350
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=92.07 E-value=9.1 Score=41.23 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002108 632 CSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEG 711 (965)
Q Consensus 632 y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~ 711 (965)
+......|+....+.+.+|..++++|..+++.-...+.+ +..+|...|.+++++-.|.-+++.|..+
T Consensus 134 W~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~----------~~~~L~~Le~~W~~~v~kn~eie~a~~~--- 200 (221)
T PF05700_consen 134 WLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEE----------AGEELRYLEQRWKELVSKNLEIEVACEE--- 200 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 334445555555555555555444444443333322222 2344667788899999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHH
Q 002108 712 ESGDGTLQQHADHIQNELEELV 733 (965)
Q Consensus 712 ~~~n~~LKeri~~iNsel~eL~ 733 (965)
|..+|.++..+..+++
T Consensus 201 ------Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 201 ------LEQEIEQLKRKAAELK 216 (221)
T ss_pred ------HHHHHHHHHHHHHHHh
Confidence 7777777777766665
No 351
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=92.04 E-value=7.5 Score=44.08 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 002108 617 ELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEE 673 (965)
Q Consensus 617 eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEe 673 (965)
++.+|-.++.-+++.|..++.+++........++++...++..+|+.+..|+.+++.
T Consensus 102 QLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~ 158 (302)
T PF09738_consen 102 QLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDE 158 (302)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666666666666655555555444444444444444444444443333
No 352
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=92.01 E-value=9.5 Score=41.32 Aligned_cols=44 Identities=9% Similarity=0.171 Sum_probs=30.9
Q ss_pred HHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002108 642 YKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL 685 (965)
Q Consensus 642 ~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqL 685 (965)
.+..+++.+..+...+..+-..++..++.|+..+++...++..+
T Consensus 100 ~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~ 143 (239)
T cd07647 100 ERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAY 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666777788888888888888877665443
No 353
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=91.98 E-value=2.9 Score=41.81 Aligned_cols=56 Identities=9% Similarity=0.111 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002108 634 TKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE 689 (965)
Q Consensus 634 sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~E 689 (965)
.+++.|..+..++..-.+.+++++.++++.++.++.+++.....+..|+.+|...|
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333444455555555555555555555555555555544433
No 354
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.97 E-value=15 Score=41.74 Aligned_cols=42 Identities=14% Similarity=0.258 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHHHHH
Q 002108 691 TFRDIQEKKMELYQAILKMEGES-GDGTLQQHADHIQNELEELVK 734 (965)
Q Consensus 691 ~LqDiQ~K~~ELe~AL~~~~~~~-~n~~LKeri~~iNsel~eL~K 734 (965)
.|..+...+-+|+.+|.+ -+. -...|..+|+.++.+-..|..
T Consensus 157 ~le~Lr~EKVdlEn~LE~--EQE~lvN~L~Kqm~~l~~eKr~Lq~ 199 (310)
T PF09755_consen 157 ELERLRREKVDLENTLEQ--EQEALVNRLWKQMDKLEAEKRRLQE 199 (310)
T ss_pred HHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666665 111 123455566666655554443
No 355
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=91.93 E-value=7 Score=50.38 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhHHHHHHhhhhHHHHHH
Q 002108 611 ADKKVEELEKEILTSREKIQFCSTKMQ-------ELILYKSRCDNRLNEITERVSGDKREVEL 666 (965)
Q Consensus 611 a~kKl~eaE~ei~~~~eKi~~y~sKmQ-------ELq~~ksraeqeL~el~eeisalKRevqs 666 (965)
.+.++.+++.+|.+++.++..++.++. .|..++.+++.+|.+...++..++.+++.
T Consensus 446 ~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~ 508 (1041)
T KOG0243|consen 446 MAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQ 508 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666666655555 33334444444444444333334333333
No 356
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=91.89 E-value=3.4 Score=54.08 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH--HHHHHhhC
Q 002108 672 EEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKIL--NDRCKQYG 744 (965)
Q Consensus 672 Eee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l--~E~~qq~G 744 (965)
.+.+..+..|++++....-....+-.++.++.+.++- |+...++..+++.+|++.+ .+++.|+-
T Consensus 874 ~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~---------~~~~l~e~~s~~e~~k~~~~~~~~~aqk~ 939 (1294)
T KOG0962|consen 874 ERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQP---------LKVELEEAQSEKEELKNERNTSEKLAQKK 939 (1294)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcc---------hhhhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333333344444333333333444444444444443 6666666666666666443 45554443
No 357
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=91.80 E-value=6.8 Score=43.61 Aligned_cols=25 Identities=12% Similarity=0.132 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Q 002108 720 QHADHIQNELEELVKILNDRCKQYG 744 (965)
Q Consensus 720 eri~~iNsel~eL~K~l~E~~qq~G 744 (965)
.+++..+.++..++..+..+..++.
T Consensus 179 ~~~~~~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 179 TDVDLAQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556666666655555544443
No 358
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.70 E-value=4.3 Score=48.82 Aligned_cols=63 Identities=19% Similarity=0.150 Sum_probs=40.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 002108 676 KQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTL-QQHADHIQNELEELVKILNDRCKQY 743 (965)
Q Consensus 676 KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~L-Keri~~iNsel~eL~K~l~E~~qq~ 743 (965)
+++..|++.|+.+.++++.-|.-+..+.++|.+ .+- .| ..++++|++-|.+|--...|..|+.
T Consensus 669 ~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K--~~Y---~l~~~Q~~~iqsiL~~L~~~i~~~~k~V 732 (741)
T KOG4460|consen 669 DQLRHLGNAIETVTMKKDKQQQHMEKVLSALPK--PTY---ILSAYQRKCIQSILKELGEHIREMVKQV 732 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--Ccc---cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777788888888877755556666677766 111 12 3367788877777775555555443
No 359
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=91.69 E-value=10 Score=38.77 Aligned_cols=16 Identities=31% Similarity=0.247 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 002108 692 FRDIQEKKMELYQAIL 707 (965)
Q Consensus 692 LqDiQ~K~~ELe~AL~ 707 (965)
+.+...|+..|+..+.
T Consensus 113 ~~~~~~ki~~Le~~i~ 128 (146)
T PF08702_consen 113 LRSNRQKIQRLEQDID 128 (146)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 360
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=91.68 E-value=0.78 Score=42.65 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 002108 624 TSREKIQFCSTKMQELILYKSRCD 647 (965)
Q Consensus 624 ~~~eKi~~y~sKmQELq~~ksrae 647 (965)
.+++++..+..+++.+...+.++.
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~~ 32 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLRELE 32 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 361
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.67 E-value=4.9 Score=54.37 Aligned_cols=127 Identities=13% Similarity=0.173 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002108 620 KEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKK 699 (965)
Q Consensus 620 ~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~ 699 (965)
..+.++.++...|+.++.-+.....+....|+.+.+|+...-..|++-|.+|+.....+..|..+|...-..++.++..+
T Consensus 384 ~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~ 463 (1822)
T KOG4674|consen 384 SSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKEL 463 (1822)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577777777888888888888888888899999999999889998899999888888877777655555566666666
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCcccc
Q 002108 700 MELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQYGLRAK 748 (965)
Q Consensus 700 ~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l~E~~qq~Gl~~K 748 (965)
..|...+.. -.++|..|+..+..+++++.-|..-+.|.+.-.++..-
T Consensus 464 ~~l~~~~~~--~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~ 510 (1822)
T KOG4674|consen 464 ESLKKQLND--LERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVS 510 (1822)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 666666555 44445558888888888888888777777666665543
No 362
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.66 E-value=1.9 Score=44.13 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=38.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 002108 654 TERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEAT--FRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQ 726 (965)
Q Consensus 654 ~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~--LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iN 726 (965)
.+++.++..++..|+.++.+..+.++.|++.|+.+... ..+|+.++.+|+..+.+ |+.|+..+.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~---------l~~kL~~l~ 136 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEE---------LEEKLEKLR 136 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---------HHHHHHHHH
Confidence 34556666666666666666666666666666655544 45666666666666665 555555544
No 363
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=91.66 E-value=19 Score=40.09 Aligned_cols=21 Identities=10% Similarity=0.096 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 002108 664 VELLAKKYEEKYKQSGDVASK 684 (965)
Q Consensus 664 vqsLr~eyEee~KQv~eLEsq 684 (965)
+.+|+.++++..+++++++..
T Consensus 179 F~rlK~ele~tk~Klee~Qne 199 (330)
T KOG2991|consen 179 FLRLKGELEQTKDKLEEAQNE 199 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 334455555555444444433
No 364
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=91.64 E-value=1.1 Score=55.28 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 002108 660 DKREVELLAKKYEEKYKQSGDVAS-------KLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 732 (965)
Q Consensus 660 lKRevqsLr~eyEee~KQv~eLEs-------qLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL 732 (965)
.+.++..|+..+-+..|..++|-+ ++.++| =|.||.+=.+-..++..+-+.. ..--|+.++..-..++-
T Consensus 941 a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kkysmEE-FFaDi~tFrnaf~ea~~en~kr---Ree~Ek~rr~k~a~eqs 1016 (1102)
T KOG1924|consen 941 AREQYSKLSSMHGNMEKLYESLGEYYAFDPKKYSMEE-FFADIRTFRNAFLEAVAENEKR---REEEEKERRAKLAKEQS 1016 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHeecCcccCcHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 445555666666666666666643 244444 3445544433233332220000 11223344444444455
Q ss_pred HHHHHHHHHh
Q 002108 733 VKILNDRCKQ 742 (965)
Q Consensus 733 ~K~l~E~~qq 742 (965)
++-+.|+.|+
T Consensus 1017 eqEr~erQqr 1026 (1102)
T KOG1924|consen 1017 EQERLERQQR 1026 (1102)
T ss_pred HHHHHHHhhh
Confidence 5666666665
No 365
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=91.63 E-value=4.6 Score=40.10 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=26.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 002108 681 VASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV 733 (965)
Q Consensus 681 LEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~ 733 (965)
+++.+...+.++..+...+..|+..|.. ++++++.++..+.+|.
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~---------~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQK---------LASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
Confidence 3334444555566666666666666666 6666666666666665
No 366
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.59 E-value=2.6 Score=52.54 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=28.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 657 VSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 657 isalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
..+++-+.+.|..+|.+...+.+.|..++...+.+|.-+..+..++.+...+
T Consensus 680 ~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~ 731 (970)
T KOG0946|consen 680 EKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEA 731 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHh
Confidence 3344455555555555665666666666666666655554444444443444
No 367
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=91.58 E-value=6.9 Score=48.70 Aligned_cols=112 Identities=17% Similarity=0.208 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---
Q 002108 615 VEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEAT--- 691 (965)
Q Consensus 615 l~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~--- 691 (965)
...++..|..+.+|+..+++..+-+......-.+-|...+..+.+..+.++-|+.+.+.-.+++..++.++++.+..
T Consensus 519 ~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~ 598 (698)
T KOG0978|consen 519 VDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEI 598 (698)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556777777777777777777666666666777777777777788888888888888888888777776644
Q ss_pred ----HHHHHHHHHHHHHHHHHHh----cCCCCchHHHHHHHHH
Q 002108 692 ----FRDIQEKKMELYQAILKME----GESGDGTLQQHADHIQ 726 (965)
Q Consensus 692 ----LqDiQ~K~~ELe~AL~~~~----~~~~n~~LKeri~~iN 726 (965)
++.|++++..|..-|..+. +.+.+.-|.++++++.
T Consensus 599 ~~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK 641 (698)
T KOG0978|consen 599 EKFKRKRLEEELERLKRKLERLKKEESGASADEVLAEELKEYK 641 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence 4566666666666666644 1123444555554443
No 368
>PF13166 AAA_13: AAA domain
Probab=91.56 E-value=4.4 Score=49.90 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=8.7
Q ss_pred HHHHHHHHhhCcc
Q 002108 734 KILNDRCKQYGLR 746 (965)
Q Consensus 734 K~l~E~~qq~Gl~ 746 (965)
...++.++.+|..
T Consensus 462 ~~iN~~L~~~g~~ 474 (712)
T PF13166_consen 462 DRINEELKRLGFS 474 (712)
T ss_pred HHHHHHHHHhCCC
Confidence 5567777777744
No 369
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=91.53 E-value=0.63 Score=57.43 Aligned_cols=32 Identities=16% Similarity=0.363 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH
Q 002108 472 REVLKQVWDLSDQDNDGMLSLKEFCTALYLMER 504 (965)
Q Consensus 472 ~eeL~~IW~LaD~D~DGkLs~dEFvvAM~LI~~ 504 (965)
.+.|..+-.+ -...+..-.-++|++.|.-|.+
T Consensus 745 ~E~l~~L~e~-Kaeye~l~e~EQF~vvm~~vkr 776 (1102)
T KOG1924|consen 745 QEQLNKLSEL-KAEYEDLPEPEQFVVVMSQVKR 776 (1102)
T ss_pred HHHHHHHHHH-HHhccCCCCHHHHhHHHhhccc
Confidence 3444444333 2233445566888887776653
No 370
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.47 E-value=4.7 Score=50.47 Aligned_cols=9 Identities=33% Similarity=0.143 Sum_probs=5.4
Q ss_pred CCCCCCCCC
Q 002108 142 NASTNQQSP 150 (965)
Q Consensus 142 ~~~~~~~~~ 150 (965)
+-..||++|
T Consensus 242 ~N~SNQ~~F 250 (970)
T KOG0946|consen 242 NNISNQNFF 250 (970)
T ss_pred hCcchhhHH
Confidence 445667765
No 371
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=91.46 E-value=21 Score=39.77 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 611 ADKKVEELEKEILTSREKIQFCST 634 (965)
Q Consensus 611 a~kKl~eaE~ei~~~~eKi~~y~s 634 (965)
.+.++.+++.+|.+.++++.+|.+
T Consensus 86 Lq~ql~~l~akI~k~~~el~~L~T 109 (258)
T PF15397_consen 86 LQQQLEQLDAKIQKTQEELNFLST 109 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777766544
No 372
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=91.46 E-value=3.5 Score=51.21 Aligned_cols=10 Identities=20% Similarity=0.129 Sum_probs=6.5
Q ss_pred hhcccccccc
Q 002108 774 WDKLEDEGFT 783 (965)
Q Consensus 774 w~~~~d~~f~ 783 (965)
|||+.++.++
T Consensus 364 fdkVf~p~~s 373 (670)
T KOG0239|consen 364 FDKVFGPLAS 373 (670)
T ss_pred eeeecCCccc
Confidence 6667666655
No 373
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=91.43 E-value=0.22 Score=33.68 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=12.0
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHH
Q 002108 442 TKVFVQVDIDRDGKITGEQAYNLF 465 (965)
Q Consensus 442 ~~~F~~lDkD~dG~ISg~Elr~~f 465 (965)
+.+|+.+|.+++|+|+..+++.++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHH
Confidence 344555555555555555554444
No 374
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.42 E-value=11 Score=45.93 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=24.0
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 601 LNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELIL 641 (965)
Q Consensus 601 Lns~~qeaeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~ 641 (965)
+...++.+..+.+++.+.+....+..+++++|+-+++||..
T Consensus 159 ~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~ 199 (557)
T COG0497 159 YQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEE 199 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444445556666666665556666666666666666554
No 375
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=91.40 E-value=2.3 Score=47.41 Aligned_cols=85 Identities=22% Similarity=0.303 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-
Q 002108 613 KKVEELEKEILTSREKIQFCSTKMQE--LILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE- 689 (965)
Q Consensus 613 kKl~eaE~ei~~~~eKi~~y~sKmQE--Lq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~E- 689 (965)
.+|.+-++||.+++-|+.. |+| ++..=-|.+.+| -+.+.|+||+.|++-+|.+. ++|++..
T Consensus 82 ~~l~dRetEI~eLksQL~R----MrEDWIEEECHRVEAQL-----ALKEARkEIkQLkQvieTmr-------ssL~ekDk 145 (305)
T PF15290_consen 82 NRLHDRETEIDELKSQLAR----MREDWIEEECHRVEAQL-----ALKEARKEIKQLKQVIETMR-------SSLAEKDK 145 (305)
T ss_pred HHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH-------hhhchhhh
Confidence 4555666667666665533 333 222222222211 12234555555554444333 2333322
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHh-cCC
Q 002108 690 ---ATFRDIQEKKMELYQAILKME-GES 713 (965)
Q Consensus 690 ---a~LqDiQ~K~~ELe~AL~~~~-~~~ 713 (965)
.=|.||--|-..||.=|+.|+ .++
T Consensus 146 GiQKYFvDINiQN~KLEsLLqsMElAq~ 173 (305)
T PF15290_consen 146 GIQKYFVDINIQNKKLESLLQSMELAQS 173 (305)
T ss_pred hHHHHHhhhhhhHhHHHHHHHHHHHHHh
Confidence 236677666666888888877 444
No 376
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=91.40 E-value=5.2 Score=40.04 Aligned_cols=117 Identities=24% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002108 620 KEILTSREKIQFCSTK---MQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQ 696 (965)
Q Consensus 620 ~ei~~~~eKi~~y~sK---mQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ 696 (965)
.+|.+...+++.|-.+ ++++...+..+.++..++.++.-+++.+++.+|.++.+.+..+..|+.++...+..++.+.
T Consensus 10 ~~Ll~d~~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~ 89 (150)
T PF07200_consen 10 QELLSDEEKLDAFVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELS 89 (150)
T ss_dssp HHHHHH-HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH--------------HHHHHHHHhhCcc
Q 002108 697 EKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV--------------KILNDRCKQYGLR 746 (965)
Q Consensus 697 ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~--------------K~l~E~~qq~Gl~ 746 (965)
.++. ....+.. |+..+.+...+-+.|. +...+.|+.|-++
T Consensus 90 ~~~s-~~~l~~~---------L~~~~~e~eeeSe~lae~fl~g~~d~~~Fl~~f~~~R~~yH~R 143 (150)
T PF07200_consen 90 SNYS-PDALLAR---------LQAAASEAEEESEELAEEFLDGEIDVDDFLKQFKEKRKLYHLR 143 (150)
T ss_dssp HCHH-HHHHHHH---------HHHHHHHHHHHHHHHC-S-SSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCC-HHHHHHH---------HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
No 377
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=91.38 E-value=0.23 Score=33.60 Aligned_cols=27 Identities=37% Similarity=0.591 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCCCCccCHHHHHHHHH
Q 002108 474 VLKQVWDLSDQDNDGMLSLKEFCTALY 500 (965)
Q Consensus 474 eL~~IW~LaD~D~DGkLs~dEFvvAM~ 500 (965)
++..++..+|.+++|.|++.||+.+|.
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 367899999999999999999997654
No 378
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=91.37 E-value=0.058 Score=68.09 Aligned_cols=110 Identities=19% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002108 615 VEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRD 694 (965)
Q Consensus 615 l~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqD 694 (965)
+.+.+..+.++..+...|.+.+.+|..+....+..+..+...++.+...++.|+..++++.+....|+.+|..++..+..
T Consensus 196 lee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~ 275 (859)
T PF01576_consen 196 LEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQ 275 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444443444433344444445555555555555555555555555544444
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 002108 695 IQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV 733 (965)
Q Consensus 695 iQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~ 733 (965)
++.++.+-..+. ..|+..+..+|.++..++
T Consensus 276 L~eqleeE~e~k---------~~l~~qlsk~~~El~~~k 305 (859)
T PF01576_consen 276 LREQLEEEEEAK---------SELERQLSKLNAELEQWK 305 (859)
T ss_dssp ---------------------------------------
T ss_pred HHHHHhhhhhhH---------HHHHHHHHHHhhHHHHHH
Confidence 444443333333 336666666776666665
No 379
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=91.29 E-value=1.2 Score=53.13 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 002108 690 ATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV 733 (965)
Q Consensus 690 a~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~ 733 (965)
.++..+..++.+|+.+|.+ |+++|..++.+|..|.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~---------~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRE---------LEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhhc
Confidence 3344444455555555555 5555555555555544
No 380
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=91.21 E-value=6.5 Score=46.29 Aligned_cols=113 Identities=11% Similarity=0.117 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002108 622 ILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVEL-LAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKM 700 (965)
Q Consensus 622 i~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqs-Lr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ 700 (965)
|.+++++....+.+..++...-.....++..++.++.++++.++. ++.-...-..++..++.+++..+..+++++.+..
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~ 366 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLS 366 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688888888887777777666666666677777777777777764 2322223333345555555555555555554443
Q ss_pred ---HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002108 701 ---ELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQY 743 (965)
Q Consensus 701 ---ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l~E~~qq~ 743 (965)
+++..+.+ |+.+++-.++-|+.|...+.|...+.
T Consensus 367 ~~~~~~~~l~~---------L~Re~~~~r~~ye~lL~r~qe~~~~~ 403 (458)
T COG3206 367 KLPKLQVQLRE---------LEREAEAARSLYETLLQRYQELSIQE 403 (458)
T ss_pred hchHhhhHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444 77777778888887775555544443
No 381
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=91.17 E-value=5.7 Score=44.51 Aligned_cols=54 Identities=9% Similarity=0.013 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002108 685 LTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQ 742 (965)
Q Consensus 685 La~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l~E~~qq 742 (965)
+..++.++..++.++..++..+.....+ ..+.++...+.++..++..+..++.+
T Consensus 147 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~l~~a~~~ 200 (331)
T PRK03598 147 LENARSSRDQAQATLKSAQDKLSQYREG----NRPQDIAQAKASLAQAQAALAQAELN 200 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc----CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666653321 23456666667776666444444433
No 382
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=91.13 E-value=6.5 Score=43.93 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=11.8
Q ss_pred chHHHHHHHHHHHHHHHH
Q 002108 716 GTLQQHADHIQNELEELV 733 (965)
Q Consensus 716 ~~LKeri~~iNsel~eL~ 733 (965)
...++++..++.+++.|+
T Consensus 280 e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 280 EGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp CT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 446677777777777764
No 383
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=91.07 E-value=0.47 Score=56.40 Aligned_cols=64 Identities=17% Similarity=0.303 Sum_probs=56.8
Q ss_pred cCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCC-----HHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Q 002108 7 TNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLP-----KQVLAQVWSHADQRKAGFLNRAEFFNALK 71 (965)
Q Consensus 7 ~e~~~Y~~vF~~lD~D~DGkISg~Ea~~ff~~SgLp-----~~~LaqIW~LaD~d~DG~LdreEF~vAm~ 71 (965)
.|.....+-|..+| |++|+|+..++...|.+.+++ .+..++|...++.|.+|.+++|||+.++.
T Consensus 16 ~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 16 EELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 45667778899999 999999999999999998866 58899999999999999999999998544
No 384
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=91.03 E-value=2.9 Score=43.71 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 002108 621 EILTSREKIQFCSTKMQELILYKSRCDNRLNEITE 655 (965)
Q Consensus 621 ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~e 655 (965)
+++.+..++..|+.|.|.|+...+..+.+|+++..
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s 114 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSS 114 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666777777777777666666666643
No 385
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=91.00 E-value=19 Score=38.68 Aligned_cols=93 Identities=17% Similarity=0.240 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002108 616 EELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDI 695 (965)
Q Consensus 616 ~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDi 695 (965)
+-+++..+...++++.+..++.+-++-...++....++.-.+.=...++++.....+--..+|.+|+..+...-..+..+
T Consensus 49 Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l 128 (205)
T KOG1003|consen 49 KVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSL 128 (205)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 33444556666777788888888887777777777888777777788888777777777777777777766666555555
Q ss_pred HHHHHHHHHHHHH
Q 002108 696 QEKKMELYQAILK 708 (965)
Q Consensus 696 Q~K~~ELe~AL~~ 708 (965)
..+-..+.+.+..
T Consensus 129 ~~~ee~~~q~~d~ 141 (205)
T KOG1003|consen 129 SAKEEKLEQKEEK 141 (205)
T ss_pred HHHHHHHhhhHHH
Confidence 5544444444444
No 386
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.98 E-value=11 Score=48.36 Aligned_cols=6 Identities=0% Similarity=0.019 Sum_probs=2.3
Q ss_pred HHHHHH
Q 002108 460 QAYNLF 465 (965)
Q Consensus 460 Elr~~f 465 (965)
++..||
T Consensus 144 e~~~fl 149 (908)
T COG0419 144 EFDAFL 149 (908)
T ss_pred hHHHHH
Confidence 333333
No 387
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=90.98 E-value=0.89 Score=44.20 Aligned_cols=24 Identities=8% Similarity=0.254 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 685 LTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 685 La~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
+...+.++..+..++..|+..|..
T Consensus 88 ~~~l~~~~~~l~~~~~~l~~~l~~ 111 (126)
T TIGR00293 88 IEFLKKRIEELEKAIEKLQEALAE 111 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444
No 388
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=90.82 E-value=8.3 Score=45.23 Aligned_cols=10 Identities=20% Similarity=0.514 Sum_probs=6.7
Q ss_pred ccccccchhh
Q 002108 777 LEDEGFTFVK 786 (965)
Q Consensus 777 ~~d~~f~~v~ 786 (965)
....||++|+
T Consensus 396 ~L~RGya~v~ 405 (438)
T PRK00286 396 TLARGYAIVR 405 (438)
T ss_pred HhcCceEEEE
Confidence 3466888775
No 389
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=90.78 E-value=1.2 Score=50.83 Aligned_cols=93 Identities=16% Similarity=0.244 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002108 632 CSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEG 711 (965)
Q Consensus 632 y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~ 711 (965)
++.++.+++........+|.+...++..++.+++.|+.+|++..++...|+.++..++.+|..++.=+.-|...-..
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~R--- 295 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKER--- 295 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhh---
Confidence 33444444444455555666666777777777888888888888888888877777777776666544444443333
Q ss_pred CCCCchHHHHHHHHHHHHHHHH
Q 002108 712 ESGDGTLQQHADHIQNELEELV 733 (965)
Q Consensus 712 ~~~n~~LKeri~~iNsel~eL~ 733 (965)
=++.+..+..++..|.
T Consensus 296 ------W~~~~~~l~~~~~~l~ 311 (344)
T PF12777_consen 296 ------WSEQIEELEEQLKNLV 311 (344)
T ss_dssp ------CHCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHhcccH
Confidence 4445555555555444
No 390
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=90.67 E-value=0.59 Score=53.90 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=0.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 002108 636 MQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSG 679 (965)
Q Consensus 636 mQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~ 679 (965)
+..+.....++..+|+++..++.+++.+++.+++.+.+....+.
T Consensus 86 ~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~ 129 (370)
T PF02994_consen 86 LEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIE 129 (370)
T ss_dssp --------------------------------H-----------
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33344455556666666666666777777776654444433333
No 391
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.65 E-value=16 Score=43.18 Aligned_cols=80 Identities=11% Similarity=0.049 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 629 IQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 629 i~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
.+-|-++-.+-.+.+..|+-+++.+.++.++++-.+.+|+.-+|..--....+...|..+-.++.+.|.-+..+.+.|-.
T Consensus 285 rEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrr 364 (502)
T KOG0982|consen 285 REILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRR 364 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556666666666666666677777776665555443333333344444444555555555555555555
No 392
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.62 E-value=0.43 Score=47.03 Aligned_cols=65 Identities=25% Similarity=0.360 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHc------CC-----CC-HHHHHHHH----HHhcCCCCCccCHHHH
Q 002108 432 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLS------WR-----LP-REVLKQVW----DLSDQDNDGMLSLKEF 495 (965)
Q Consensus 432 ~IS~eEk~ry~~~F~~lDkD~dG~ISg~Elr~~f~k------s~-----Lp-~eeL~~IW----~LaD~D~DGkLs~dEF 495 (965)
.|++++.+- -.|+..|-|++|+|.|-|+..++.- ++ |+ +.+|..|+ +.-|.|+||.|+|-||
T Consensus 62 ~mtpeqlqf--HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEf 139 (144)
T KOG4065|consen 62 KMTPEQLQF--HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEF 139 (144)
T ss_pred hCCHHHHhh--hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHH
Confidence 577775432 3588899999999999999888831 22 32 55665555 5568889999999999
Q ss_pred HHH
Q 002108 496 CTA 498 (965)
Q Consensus 496 vvA 498 (965)
+..
T Consensus 140 lK~ 142 (144)
T KOG4065|consen 140 LKR 142 (144)
T ss_pred Hhh
Confidence 843
No 393
>COG5283 Phage-related tail protein [Function unknown]
Probab=90.61 E-value=9.1 Score=49.90 Aligned_cols=70 Identities=11% Similarity=0.124 Sum_probs=48.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 002108 607 EATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYK 676 (965)
Q Consensus 607 eaeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~K 676 (965)
.+++.+..+.++-+-++.++.....|..++..++.++..+--.+.-..+++..+++++++|..++-.--|
T Consensus 72 ~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k 141 (1213)
T COG5283 72 AYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNK 141 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 4555555566665566677777777777777777777766666777777777788888888766666555
No 394
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=90.58 E-value=0.45 Score=53.96 Aligned_cols=93 Identities=10% Similarity=0.169 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002108 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATF 692 (965)
Q Consensus 613 kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~L 692 (965)
..+.++...|.+.+..++.+....+.|+.....+...+..+...+......|..|+..|....-.|.+|+..+.....++
T Consensus 63 s~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~I 142 (326)
T PF04582_consen 63 SDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNI 142 (326)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchH
Confidence 33444444445555555555555555555555555555555555555666666677777777777777777777777777
Q ss_pred HHHHHHHHHHHHH
Q 002108 693 RDIQEKKMELYQA 705 (965)
Q Consensus 693 qDiQ~K~~ELe~A 705 (965)
.|||.+++.||..
T Consensus 143 tdLe~RV~~LEs~ 155 (326)
T PF04582_consen 143 TDLESRVKALESG 155 (326)
T ss_dssp HHHHHHHHHHHTT
T ss_pred hhHHHHHHHHhcC
Confidence 7777776666543
No 395
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=90.55 E-value=12 Score=48.81 Aligned_cols=39 Identities=8% Similarity=-0.064 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 670 KYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 670 eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
.+++..+++..++.++..++.++..++.++..++.++.+
T Consensus 718 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 756 (1047)
T PRK10246 718 NWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDT 756 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444555555555555555555555555444
No 396
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.53 E-value=1.8 Score=46.85 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 002108 623 LTSREKIQFCSTKMQELILYKSRC 646 (965)
Q Consensus 623 ~~~~eKi~~y~sKmQELq~~ksra 646 (965)
+++++...-++.|+++++..|...
T Consensus 131 ~d~ke~~ee~kekl~E~~~EkeeL 154 (290)
T COG4026 131 MDLKEDYEELKEKLEELQKEKEEL 154 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 397
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=90.53 E-value=0.14 Score=59.48 Aligned_cols=56 Identities=18% Similarity=0.279 Sum_probs=50.7
Q ss_pred CCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHH
Q 002108 20 DLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTV 75 (965)
Q Consensus 20 D~D~DGkISg~Ea~~ff~~SgLp~~~LaqIW~LaD~d~DG~LdreEF~vAm~LV~l 75 (965)
|.+.+|.|+-.||.=++.---.|....+-.|.++|.|+||.||++||...+.||.-
T Consensus 209 ~lg~~GLIsfSdYiFLlTlLS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~s 264 (489)
T KOG2643|consen 209 KLGESGLISFSDYIFLLTLLSIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRS 264 (489)
T ss_pred EcCCCCeeeHHHHHHHHHHHccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHh
Confidence 44578999999998888888899999999999999999999999999999999873
No 398
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=90.48 E-value=15 Score=35.91 Aligned_cols=82 Identities=12% Similarity=0.237 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH------HHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002108 617 ELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEIT------ERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 690 (965)
Q Consensus 617 eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~------eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea 690 (965)
.+..+++..+.+++....++++|..+.....+++.+.. ..+....+=+..|...++.....+..++..+.....
T Consensus 17 ~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~ 96 (141)
T TIGR02473 17 QAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAGTSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRE 96 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555554444321 112233344445555555555555555544444444
Q ss_pred HHHHHHHH
Q 002108 691 TFRDIQEK 698 (965)
Q Consensus 691 ~LqDiQ~K 698 (965)
.|.+...+
T Consensus 97 ~l~~a~~~ 104 (141)
T TIGR02473 97 RLLEARRE 104 (141)
T ss_pred HHHHHHHH
Confidence 44444333
No 399
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=90.43 E-value=20 Score=42.17 Aligned_cols=94 Identities=20% Similarity=0.186 Sum_probs=42.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HH
Q 002108 607 EATEADKKVEELEKEILTSREKI----QFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSG-DV 681 (965)
Q Consensus 607 eaeEa~kKl~eaE~ei~~~~eKi----~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~-eL 681 (965)
+..|+......++.++.++++++ .++...+||-.-...|.+..|+++.+ --.+||..|+.++....-++. ..
T Consensus 220 el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~e---lHq~Ei~~LKqeLa~~EEK~~Yqs 296 (395)
T PF10267_consen 220 ELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTE---LHQNEIYNLKQELASMEEKMAYQS 296 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444444445555555555433 34444444433333344444444432 234445455544322221111 11
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 002108 682 ASKLTLEEATFRDIQEKKMELY 703 (965)
Q Consensus 682 EsqLa~~Ea~LqDiQ~K~~ELe 703 (965)
.++..+.+..+--.|+++..||
T Consensus 297 ~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 297 YERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 2334445555666677777777
No 400
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=90.42 E-value=16 Score=38.70 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=7.3
Q ss_pred HHHHHHH-HHHHHHHHhh
Q 002108 727 NELEELV-KILNDRCKQY 743 (965)
Q Consensus 727 sel~eL~-K~l~E~~qq~ 743 (965)
..+.+|+ |++.|.++++
T Consensus 141 ~Ki~~LE~KL~eEehqRK 158 (178)
T PF14073_consen 141 TKIKELEEKLQEEEHQRK 158 (178)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 3344444 4444444443
No 401
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=90.31 E-value=16 Score=44.22 Aligned_cols=7 Identities=43% Similarity=0.425 Sum_probs=3.3
Q ss_pred ccccccc
Q 002108 763 IQEGTAD 769 (965)
Q Consensus 763 ~qe~a~~ 769 (965)
||--|.+
T Consensus 192 iqr~a~~ 198 (514)
T TIGR03319 192 IQRYAGD 198 (514)
T ss_pred HHhccch
Confidence 4555543
No 402
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=90.31 E-value=2.6 Score=42.83 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002108 660 DKREVELLAKKYEEKYKQSGDVASKLTLEE 689 (965)
Q Consensus 660 lKRevqsLr~eyEee~KQv~eLEsqLa~~E 689 (965)
|+.++.+....|+..++.+.+|+.++...+
T Consensus 46 Lq~e~~~~e~~le~d~~~L~~Le~~~~~~~ 75 (160)
T PF13094_consen 46 LQEEIEKEEAALERDYEYLQELEKNAKALE 75 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 403
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.30 E-value=19 Score=46.32 Aligned_cols=14 Identities=36% Similarity=0.401 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 002108 694 DIQEKKMELYQAIL 707 (965)
Q Consensus 694 DiQ~K~~ELe~AL~ 707 (965)
++..++.++++.+.
T Consensus 658 ~~~~~~~~~~~~~~ 671 (908)
T COG0419 658 ELEEKVEELEAEIR 671 (908)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334333333333
No 404
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=90.23 E-value=8.1 Score=48.95 Aligned_cols=15 Identities=7% Similarity=-0.050 Sum_probs=9.2
Q ss_pred Ccccccccchhhhhc
Q 002108 762 GIQEGTADWDEDWDK 776 (965)
Q Consensus 762 ~~qe~a~~w~e~w~~ 776 (965)
.++.|-..+...|++
T Consensus 636 ~~~~Gd~V~v~~~~~ 650 (782)
T PRK00409 636 ELKVGDEVKYLSLGQ 650 (782)
T ss_pred CCCCCCEEEEccCCc
Confidence 466676666665554
No 405
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=90.18 E-value=20 Score=43.53 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=21.9
Q ss_pred HHHHHHHhhhhhhHHH-HHHhhhhHHHHHH-HHH----HHHHHHHHHHHHHhHHHHHH
Q 002108 638 ELILYKSRCDNRLNEI-TERVSGDKREVEL-LAK----KYEEKYKQSGDVASKLTLEE 689 (965)
Q Consensus 638 ELq~~ksraeqeL~el-~eeisalKRevqs-Lr~----eyEee~KQv~eLEsqLa~~E 689 (965)
+|..+...+.++|++. .++..+++++++. ++. |.+..++++.+|..+|...|
T Consensus 334 eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le 391 (582)
T PF09731_consen 334 ELKRQEEAHEEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALE 391 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444443 3333334333332 222 22233344555555554444
No 406
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=90.16 E-value=0.53 Score=61.22 Aligned_cols=64 Identities=13% Similarity=0.365 Sum_probs=56.0
Q ss_pred cCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC--C-------CHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 002108 7 TNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSN--L-------PKQVLAQVWSHADQRKAGFLNRAEFFNAL 70 (965)
Q Consensus 7 ~e~~~Y~~vF~~lD~D~DGkISg~Ea~~ff~~Sg--L-------p~~~LaqIW~LaD~d~DG~LdreEF~vAm 70 (965)
..-..|.-+|+.+|.+.+|+++-.+++.+|+.-| | |...+..|..++|++++||+++++|..-|
T Consensus 2250 e~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2250 EQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred HHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 3455788999999999999999999999998643 4 55689999999999999999999998765
No 407
>PF15456 Uds1: Up-regulated During Septation
Probab=90.15 E-value=3.9 Score=40.76 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 002108 718 LQQHADHIQNELEELVKILNDRCKQ 742 (965)
Q Consensus 718 LKeri~~iNsel~eL~K~l~E~~qq 742 (965)
+..+++.+..+|..|++-+.+-+++
T Consensus 86 ~~rk~ee~~~eL~~le~R~~~~~~r 110 (124)
T PF15456_consen 86 SDRKCEELAQELWKLENRLAEVRQR 110 (124)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666555554443
No 408
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=90.15 E-value=5.2 Score=40.05 Aligned_cols=92 Identities=15% Similarity=0.230 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHH
Q 002108 629 IQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK--LTLEEATFRDIQEKKMELYQAI 706 (965)
Q Consensus 629 i~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsq--La~~Ea~LqDiQ~K~~ELe~AL 706 (965)
++.+..+++.|...... +.++.+.+...+..++..++..|.+....+..|+.. ..-=..+++.|-.++..+...|
T Consensus 29 l~~LEae~q~L~~kE~~---r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L 105 (126)
T PF09403_consen 29 LNQLEAEYQQLEQKEEA---RYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKL 105 (126)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 45556666665554332 233333344445555555543333322222222211 1111144666666666555554
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHHHH
Q 002108 707 LKMEGESGDGTLQQHADHIQNELEELVKI 735 (965)
Q Consensus 707 ~~~~~~~~n~~LKeri~~iNsel~eL~K~ 735 (965)
.+ +|+..+..++.+++.
T Consensus 106 ~k------------~I~~~e~iI~~fe~i 122 (126)
T PF09403_consen 106 DK------------EIAEQEQIIDNFEKI 122 (126)
T ss_dssp HH------------HHHHHHHHHHHHHHH
T ss_pred HH------------HHHHHHHHHHHHHHH
Confidence 44 666666666655543
No 409
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=90.11 E-value=9.5 Score=41.86 Aligned_cols=78 Identities=22% Similarity=0.227 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHH-------------HHHHHHHHHHhHHHHHHHHHHHH
Q 002108 629 IQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYE-------------EKYKQSGDVASKLTLEEATFRDI 695 (965)
Q Consensus 629 i~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyE-------------ee~KQv~eLEsqLa~~Ea~LqDi 695 (965)
++.+...+++|..-..+|...|+++..++....++-+.+|.+|. .-.+++..+...|..+...-..+
T Consensus 24 ~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~ 103 (296)
T PF13949_consen 24 IEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQASESDSQL 103 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34555666666666666666666666666666666666666662 22244444444455555444555
Q ss_pred HHHHHHHHHHH
Q 002108 696 QEKKMELYQAI 706 (965)
Q Consensus 696 Q~K~~ELe~AL 706 (965)
..++.....-|
T Consensus 104 ~~~~~~~~~~l 114 (296)
T PF13949_consen 104 RSKLESIEENL 114 (296)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555444444
No 410
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=90.06 E-value=0.56 Score=42.16 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=47.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHcC----CCCHHHHHHHHHHhcCC----CCCccCHHHHHHHH
Q 002108 440 KYTKVFVQVDIDRDGKITGEQAYNLFLSW----RLPREVLKQVWDLSDQD----NDGMLSLKEFCTAL 499 (965)
Q Consensus 440 ry~~~F~~lDkD~dG~ISg~Elr~~f~ks----~Lp~eeL~~IW~LaD~D----~DGkLs~dEFvvAM 499 (965)
+++.+|..+-. +.++||.++++.||... .++.+.+.+|+.....+ ..+.|++++|+..|
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 36789999955 78999999999999642 57888999999876544 47899999998544
No 411
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.05 E-value=9.3 Score=41.67 Aligned_cols=30 Identities=17% Similarity=0.106 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 002108 685 LTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHAD 723 (965)
Q Consensus 685 La~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~ 723 (965)
.+.+|...++.|.++.-|+.-+|. ||++++
T Consensus 88 q~~ieqeik~~q~elEvl~~n~Q~---------lkeE~d 117 (246)
T KOG4657|consen 88 QMGIEQEIKATQSELEVLRRNLQL---------LKEEKD 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhh
Confidence 566777777888877777776766 666665
No 412
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=90.05 E-value=6.9 Score=37.26 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 002108 624 TSREKIQFCSTKMQELILYKSRCDNRLNEIT 654 (965)
Q Consensus 624 ~~~eKi~~y~sKmQELq~~ksraeqeL~el~ 654 (965)
+...+++.|+.+++.|..++...+.++++..
T Consensus 3 ~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~ 33 (105)
T cd00632 3 EQLAQLQQLQQQLQAYIVQRQKVEAQLNENK 33 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777788887777777776666654
No 413
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=90.03 E-value=3.5 Score=38.15 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 002108 618 LEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQS 678 (965)
Q Consensus 618 aE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv 678 (965)
+-.|+..+...+..|+.+-.++..+....-+++..+...+-++.+.-..++.+||+++..+
T Consensus 9 ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rL 69 (79)
T PF08581_consen 9 IRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARL 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555666666666666666777778888888888888888999999888655
No 414
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=90.03 E-value=5.1 Score=42.53 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 002108 718 LQQHADHIQNELE 730 (965)
Q Consensus 718 LKeri~~iNsel~ 730 (965)
||..++.++.++.
T Consensus 164 lks~~~~l~~~~~ 176 (190)
T PF05266_consen 164 LKSEAEALKEEIE 176 (190)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 415
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=90.03 E-value=18 Score=38.63 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 002108 718 LQQHADHIQNELEELV 733 (965)
Q Consensus 718 LKeri~~iNsel~eL~ 733 (965)
|.+.+.....||+..+
T Consensus 156 L~~QL~~Ar~D~~~tk 171 (188)
T PF05335_consen 156 LQRQLQAARADYEKTK 171 (188)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444555555554
No 416
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=90.01 E-value=18 Score=39.44 Aligned_cols=10 Identities=30% Similarity=0.358 Sum_probs=5.1
Q ss_pred hhcccccccc
Q 002108 774 WDKLEDEGFT 783 (965)
Q Consensus 774 w~~~~d~~f~ 783 (965)
|++-.|++|-
T Consensus 190 ~~~~~~e~f~ 199 (247)
T PF06705_consen 190 RREKGDEQFQ 199 (247)
T ss_pred HHhhhhHHHH
Confidence 4445555554
No 417
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.00 E-value=6 Score=47.22 Aligned_cols=66 Identities=21% Similarity=0.130 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 002108 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQS 678 (965)
Q Consensus 613 kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv 678 (965)
.++.++.+.-++.--||+.|++|..+|.+-.-|.--.+.=++.+=-.|...-|.||.+++.-++++
T Consensus 362 e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~l 427 (508)
T KOG3091|consen 362 ERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQL 427 (508)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHh
Confidence 344444444444555555555555554443333322222222222233333444555555555444
No 418
>PRK12704 phosphodiesterase; Provisional
Probab=89.95 E-value=18 Score=43.86 Aligned_cols=7 Identities=57% Similarity=0.610 Sum_probs=3.2
Q ss_pred ccccccc
Q 002108 763 IQEGTAD 769 (965)
Q Consensus 763 ~qe~a~~ 769 (965)
||--|.+
T Consensus 198 ~qr~a~~ 204 (520)
T PRK12704 198 IQRCAAD 204 (520)
T ss_pred HHhhcch
Confidence 4544443
No 419
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=89.84 E-value=27 Score=38.37 Aligned_cols=67 Identities=9% Similarity=0.147 Sum_probs=40.5
Q ss_pred HHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 002108 642 YKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE-----ATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 642 ~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~E-----a~LqDiQ~K~~ELe~AL~~ 708 (965)
.+..+++.+..+...+..+-..++.-+++|+...+++...++.++-.+ ..+.-+++|+....+++++
T Consensus 100 ~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~keleK~~~K~~k~~~~~~~ 171 (242)
T cd07671 100 QRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGNPKQSEKSQNKAKQCRDAATE 171 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666667777888888899988888776544332222 2244455554444444433
No 420
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=89.78 E-value=34 Score=41.28 Aligned_cols=9 Identities=22% Similarity=0.482 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 002108 718 LQQHADHIQ 726 (965)
Q Consensus 718 LKeri~~iN 726 (965)
||++|..+.
T Consensus 145 l~e~l~~f~ 153 (475)
T PRK10361 145 LREQLDGFR 153 (475)
T ss_pred HHHHHHHHH
Confidence 333333333
No 421
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=89.70 E-value=16 Score=45.63 Aligned_cols=102 Identities=12% Similarity=0.171 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------------------H
Q 002108 630 QFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE-------------------A 690 (965)
Q Consensus 630 ~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~E-------------------a 690 (965)
+.++.++..++.++.+...+|+....+.+.-++-+-+|+..|+.++..+.+|...|.+.- +
T Consensus 987 ekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~GV~AD~gAeeRA~~RRDELh~ 1066 (1480)
T COG3096 987 EKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERARIRRDELHA 1066 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCcCcchHHHHHHHHHHHHH
Confidence 357888888999999999999999999999999999999999999999999987754421 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 002108 691 TFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV 733 (965)
Q Consensus 691 ~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~ 733 (965)
.|..-+.+.++++.+|.- -..+-.+|..+|+.+..+|.++.
T Consensus 1067 ~Lst~RsRr~~~EkqlT~--~E~E~~~L~~~~rK~ErDY~~~R 1107 (1480)
T COG3096 1067 QLSTNRSRRNQLEKQLTF--CEAEMDNLTRKLRKLERDYFEMR 1107 (1480)
T ss_pred HHhccHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhHHHHH
Confidence 233444555556666555 22223446666666666666544
No 422
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=89.70 E-value=6.4 Score=41.53 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 002108 695 IQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE 730 (965)
Q Consensus 695 iQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~ 730 (965)
+..||.+|+.-|.+ .+..-..+++++.+++..++
T Consensus 139 ae~Ki~~LE~KL~e--EehqRKlvQdkAaqLQt~lE 172 (178)
T PF14073_consen 139 AETKIKELEEKLQE--EEHQRKLVQDKAAQLQTGLE 172 (178)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhHH
Confidence 34455566655555 22222456666666665554
No 423
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=89.66 E-value=16 Score=44.08 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhhhhHH---H-----------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002108 632 CSTKMQELILYKSRCDNRLNEITERVSGDKR---E-----------VELLAKKYEEKYKQSGDVASKLTLEEATFRDIQE 697 (965)
Q Consensus 632 y~sKmQELq~~ksraeqeL~el~eeisalKR---e-----------vqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~ 697 (965)
.+...+++..||.++..-|.....+|..||. . ++.|+.+.+...-++..|+.+|...+..++|++.
T Consensus 230 ~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~ 309 (511)
T PF09787_consen 230 GESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEA 309 (511)
T ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777776666666666666666666 1 3445555555555555555554444444444443
Q ss_pred H
Q 002108 698 K 698 (965)
Q Consensus 698 K 698 (965)
+
T Consensus 310 ~ 310 (511)
T PF09787_consen 310 Q 310 (511)
T ss_pred H
Confidence 3
No 424
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=89.63 E-value=22 Score=39.15 Aligned_cols=66 Identities=14% Similarity=0.160 Sum_probs=37.1
Q ss_pred HHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 002108 643 KSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE-------ATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 643 ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~E-------a~LqDiQ~K~~ELe~AL~~ 708 (965)
+.+++..+..+...+...-.+++.-++.|+..+++...+..++..+. ..+.-+++++......+..
T Consensus 114 ~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~ 186 (258)
T cd07655 114 TKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSK 186 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555566677778888877777766555433222 3355555555555444444
No 425
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=89.63 E-value=20 Score=44.49 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHhhhhHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHH
Q 002108 622 ILTSREKIQFCSTKMQELILYKSRCDNRLN-EITERVSGDKREVELLAKKYEEK----YKQSGDVASKLTLEEATFRDIQ 696 (965)
Q Consensus 622 i~~~~eKi~~y~sKmQELq~~ksraeqeL~-el~eeisalKRevqsLr~eyEee----~KQv~eLEsqLa~~Ea~LqDiQ 696 (965)
.+++.+-|+-.....++|..++....+++. .++ +....++.|..+|..+ -|+|+-|+.++..-|..++||.
T Consensus 185 y~~l~~niekMi~aFEeLR~qAEn~r~EM~fKlK----E~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~ 260 (786)
T PF05483_consen 185 YMDLNENIEKMIAAFEELRVQAENDRQEMHFKLK----EDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLL 260 (786)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHH
Confidence 466777777777777777776665555443 333 3444555555555554 4899999999988888888887
Q ss_pred HHHHHHHHHHHHHh
Q 002108 697 EKKMELYQAILKME 710 (965)
Q Consensus 697 ~K~~ELe~AL~~~~ 710 (965)
-.+.+-...+..++
T Consensus 261 ~~l~es~~~~~qLe 274 (786)
T PF05483_consen 261 LLLQESQDKCNQLE 274 (786)
T ss_pred HHHHHHHHHHHHHH
Confidence 77666666555543
No 426
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=89.62 E-value=6.4 Score=40.68 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=14.8
Q ss_pred HHhhhhhhHHH-HHHhhhhHHHHHHHHHHHHHHHH
Q 002108 643 KSRCDNRLNEI-TERVSGDKREVELLAKKYEEKYK 676 (965)
Q Consensus 643 ksraeqeL~el-~eeisalKRevqsLr~eyEee~K 676 (965)
+...+.+|.++ ++++......++.++.+|.+++.
T Consensus 97 ~~~~ea~L~~~~~~~~~~~~~~~~~~~~~~~~~~i 131 (155)
T PRK06569 97 KKNLEQDLKNSINQNIEDINLAAKQFRTNKSEAII 131 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33334444443 34444444444444444444443
No 427
>PRK00106 hypothetical protein; Provisional
Probab=89.61 E-value=23 Score=43.30 Aligned_cols=7 Identities=14% Similarity=0.240 Sum_probs=3.5
Q ss_pred ccccccc
Q 002108 763 IQEGTAD 769 (965)
Q Consensus 763 ~qe~a~~ 769 (965)
||--|++
T Consensus 213 iqr~a~~ 219 (535)
T PRK00106 213 MQRLAGE 219 (535)
T ss_pred HHHhcch
Confidence 4555544
No 428
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=89.51 E-value=35 Score=37.47 Aligned_cols=43 Identities=12% Similarity=0.241 Sum_probs=29.2
Q ss_pred HHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002108 643 KSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL 685 (965)
Q Consensus 643 ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqL 685 (965)
+..+++.+..+......+-..++.-+++|+...++...+...+
T Consensus 102 rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~ 144 (240)
T cd07672 102 RKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAV 144 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555655566667778888889998888877766554
No 429
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=89.43 E-value=19 Score=33.81 Aligned_cols=17 Identities=6% Similarity=-0.134 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002108 689 EATFRDIQEKKMELYQA 705 (965)
Q Consensus 689 Ea~LqDiQ~K~~ELe~A 705 (965)
+..+..++.-+..++..
T Consensus 85 ~~~l~~l~~~~~~~e~~ 101 (127)
T smart00502 85 TQKQEKLSHAINFTEEA 101 (127)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 430
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=89.35 E-value=32 Score=39.41 Aligned_cols=13 Identities=23% Similarity=0.133 Sum_probs=6.9
Q ss_pred HHHHHHHhhCccc
Q 002108 735 ILNDRCKQYGLRA 747 (965)
Q Consensus 735 ~l~E~~qq~Gl~~ 747 (965)
.++.+-++.||.-
T Consensus 190 e~~~~e~~~glEK 202 (391)
T KOG1850|consen 190 EASIQEKKSGLEK 202 (391)
T ss_pred HHHHHHHHhhhhH
Confidence 3445555666543
No 431
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=89.33 E-value=2.7 Score=40.47 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=29.4
Q ss_pred HHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 002108 675 YKQSGDVASKLTLE--EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV 733 (965)
Q Consensus 675 ~KQv~eLEsqLa~~--Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~ 733 (965)
...+..||.++... ...+++|+-.+.+++..+.. |.++|+-++..++-|.
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~---------l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKE---------LSARLQGVSHQLDLLL 99 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHH---------HHHHHHHHHHHHHHHH
Confidence 33334444443333 34566666666667766666 7777777777766554
No 432
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=89.33 E-value=15 Score=48.24 Aligned_cols=51 Identities=14% Similarity=0.239 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHH
Q 002108 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKRE 663 (965)
Q Consensus 613 kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRe 663 (965)
.++..++.+++...+..+.++.+.+.+..+..+.+.+++.+.+.+++.+++
T Consensus 187 ~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~ 237 (1109)
T PRK10929 187 ALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQR 237 (1109)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777777777777777666666555443
No 433
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.32 E-value=15 Score=45.89 Aligned_cols=126 Identities=19% Similarity=0.289 Sum_probs=74.1
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCchHH----HHH
Q 002108 650 LNEITERVSGDKREVELLAKKYEEKYKQSGDVA--SKLTLEEATFRDIQEKKMELYQAILKME-GESGDGTLQ----QHA 722 (965)
Q Consensus 650 L~el~eeisalKRevqsLr~eyEee~KQv~eLE--sqLa~~Ea~LqDiQ~K~~ELe~AL~~~~-~~~~n~~LK----eri 722 (965)
|..-.+.+...||.+++-+..|+.-+|.+.+.. +.+..+|.+ +...--..|+.+|+..++ ++++|-.-. ++-
T Consensus 350 LsA~~E~~~~~r~~~~~~~~~~~aLv~~l~~aAP~~A~~~L~~~-~~~~~~~dE~~AA~E~L~~~~~~~~~~~~~A~d~~ 428 (1104)
T COG4913 350 LSAKREGAVDKRRTISTARAGLDALVKGLGGAAPESAEELLELN-NAARLTVDEYPAAREALESAGQRNVEDRTRAVDEF 428 (1104)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCCcccHHHHHHHH-HHHHHhHhhhHHHHHHHHhccccchHHHHHHHHHH
Confidence 333355566678888888888888887775532 222222211 122223556777777777 666552222 122
Q ss_pred HHHHHHHHH-----------HHHHHHHHHHhhCccccccccccccCCCCCCcccccccchhhhhcccccccc
Q 002108 723 DHIQNELEE-----------LVKILNDRCKQYGLRAKPTLLVELPFGWQPGIQEGTADWDEDWDKLEDEGFT 783 (965)
Q Consensus 723 ~~iNsel~e-----------L~K~l~E~~qq~Gl~~K~~~~~E~~~g~~~~~qe~a~~w~e~w~~~~d~~f~ 783 (965)
..+.+||.- |...+.+-|+-+|+.+. .|||-=+ =||-++++|.---..+. -||.
T Consensus 429 ~a~~~El~SL~k~~SNI~~~~l~vR~~LC~~L~v~~~-----~mPFAGE-LI~~~~~~WE~~~qRiL-~GF~ 493 (1104)
T COG4913 429 KAADQELSSLSKGSSNIEYRLLQVRENLCQDLGVSPR-----DMPFAGE-LIDPNNAEWEPVVQRIL-GGFA 493 (1104)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCChh-----hCCcccc-ccCCCcccchHHHHHHh-hhch
Confidence 222333333 33678899999998764 5888766 68889999975333332 3665
No 434
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=89.28 E-value=5.2 Score=49.80 Aligned_cols=11 Identities=27% Similarity=0.329 Sum_probs=4.8
Q ss_pred HHHHHHHHhhC
Q 002108 734 KILNDRCKQYG 744 (965)
Q Consensus 734 K~l~E~~qq~G 744 (965)
|+.|+-..-+|
T Consensus 304 kL~N~i~eLkG 314 (670)
T KOG0239|consen 304 KLHNEILELKG 314 (670)
T ss_pred HHHHHHHHhhc
Confidence 44444444444
No 435
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.09 E-value=22 Score=43.14 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 002108 622 ILTSREKIQFCSTKMQELILYKSRCDNRLNEIT 654 (965)
Q Consensus 622 i~~~~eKi~~y~sKmQELq~~ksraeqeL~el~ 654 (965)
|.++..|-.+|-.|.=+|+.......++|.++.
T Consensus 95 LqESaakE~~yl~kI~eleneLKq~r~el~~~q 127 (772)
T KOG0999|consen 95 LQESAAKEEYYLQKILELENELKQLRQELTNVQ 127 (772)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544444444444443
No 436
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=89.07 E-value=0.12 Score=64.06 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHhhhhhhHHHHHHhhhhHH
Q 002108 642 YKSRCDNRLNEITERVSGDKR 662 (965)
Q Consensus 642 ~ksraeqeL~el~eeisalKR 662 (965)
....++.+|.+..++...++.
T Consensus 122 ~~~~le~el~~~~e~~~~~k~ 142 (722)
T PF05557_consen 122 REEELEEELEEAEEELEQLKR 142 (722)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 437
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=89.04 E-value=8.8 Score=42.92 Aligned_cols=19 Identities=11% Similarity=-0.010 Sum_probs=11.3
Q ss_pred HHHhcCCCCCccCHHHHHH
Q 002108 479 WDLSDQDNDGMLSLKEFCT 497 (965)
Q Consensus 479 W~LaD~D~DGkLs~dEFvv 497 (965)
-.++-+|--.+-+|+.|..
T Consensus 117 a~eakidfpsrhdwdd~fm 135 (445)
T KOG2891|consen 117 AAEAKIDFPSRHDWDDFFM 135 (445)
T ss_pred HHhhcCCCCcccchHHHHh
Confidence 3455555556667777753
No 438
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=89.03 E-value=14 Score=36.30 Aligned_cols=96 Identities=21% Similarity=0.211 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHH-----HHHHHHHH----HHHHHHHHh
Q 002108 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVEL-----LAKKYEEK----YKQSGDVAS 683 (965)
Q Consensus 613 kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqs-----Lr~eyEee----~KQv~eLEs 683 (965)
+|+.+.-..+++++..+.-|-...|.|+.+..+...-|+|+. .+.....-+.. ++.++++- -|.+.=+..
T Consensus 5 ~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eld-lle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~~ 83 (120)
T KOG3478|consen 5 KKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELD-LLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFISK 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHHH
Confidence 444444455556666666666666777666665555555553 22222222221 23333332 344444556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 684 KLTLEEATFRDIQEKKMELYQAILKM 709 (965)
Q Consensus 684 qLa~~Ea~LqDiQ~K~~ELe~AL~~~ 709 (965)
.|.-.|..++|+|.+..+...++.++
T Consensus 84 Eikr~e~~i~d~q~e~~k~R~~v~k~ 109 (120)
T KOG3478|consen 84 EIKRLENQIRDSQEEFEKQREAVIKL 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777778887777777777773
No 439
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=89.01 E-value=11 Score=44.34 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 002108 692 FRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV 733 (965)
Q Consensus 692 LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~ 733 (965)
|...+.++.+|+..|.. .++.++++.+.+|+.|.
T Consensus 352 L~r~~qrL~~L~~rL~~--------a~~~~L~~~~~rL~~l~ 385 (438)
T PRK00286 352 IERAQQRLEQLEQRLRR--------AMRRQLKRKRQRLEALA 385 (438)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 44455555555555444 24444444444444444
No 440
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=88.99 E-value=16 Score=46.52 Aligned_cols=125 Identities=19% Similarity=0.198 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhhhhHH-HHHHhhhhH----------HHHH-HH
Q 002108 609 TEADKKVEELEKEILTSREKIQFCSTKMQELILYK---------SRCDNRLNE-ITERVSGDK----------REVE-LL 667 (965)
Q Consensus 609 eEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~k---------sraeqeL~e-l~eeisalK----------Revq-sL 667 (965)
.+.++++.+++.+++-++++...|+.+..-|..-. .=|-++++- ...++.+.| .++. .|
T Consensus 623 ~~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~El~~~L 702 (984)
T COG4717 623 KKLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDEL 702 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHH
Confidence 34567788888888888888777776654332210 001111110 011111111 1122 35
Q ss_pred HHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHh---------------cCCCCchHHHH
Q 002108 668 AKKYEEKYKQSGDVASK-----------LTLEEATFRDIQEKKMELYQAILKME---------------GESGDGTLQQH 721 (965)
Q Consensus 668 r~eyEee~KQv~eLEsq-----------La~~Ea~LqDiQ~K~~ELe~AL~~~~---------------~~~~n~~LKer 721 (965)
+++++...|++..|=+. .+..+.++++..+++..++++|..+. ...++..|-+.
T Consensus 703 ~ae~~~~~kei~dLfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~ 782 (984)
T COG4717 703 RAELELHRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEA 782 (984)
T ss_pred HHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHH
Confidence 66666666777666433 45555778888899999998888310 11234455567
Q ss_pred HHHHHHHHHHHH
Q 002108 722 ADHIQNELEELV 733 (965)
Q Consensus 722 i~~iNsel~eL~ 733 (965)
++.++.++.+|.
T Consensus 783 ~d~~~ee~~el~ 794 (984)
T COG4717 783 IDALDEEVEELH 794 (984)
T ss_pred HHHHHHHHHHHH
Confidence 777777777776
No 441
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=88.96 E-value=30 Score=39.34 Aligned_cols=13 Identities=15% Similarity=0.488 Sum_probs=5.4
Q ss_pred cccchhhhhcccc
Q 002108 767 TADWDEDWDKLED 779 (965)
Q Consensus 767 a~~w~e~w~~~~d 779 (965)
...|.+-.+.|.|
T Consensus 218 L~~Y~~Kf~efq~ 230 (309)
T PF09728_consen 218 LNLYSEKFEEFQD 230 (309)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 442
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=88.96 E-value=16 Score=36.58 Aligned_cols=81 Identities=10% Similarity=0.077 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH------HHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002108 620 KEILTSREKIQFCSTKMQELILYKSRCDNRLNEIT------ERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFR 693 (965)
Q Consensus 620 ~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~------eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~Lq 693 (965)
.++...+..++....+++.|..+.....+.+.+.. .++.....=+..|...|.++.+.|..++..+......|.
T Consensus 23 ~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ 102 (146)
T PRK07720 23 GEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQDLT 102 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555555554444321 112223344445666666666666666665554444454
Q ss_pred HHHHHHH
Q 002108 694 DIQEKKM 700 (965)
Q Consensus 694 DiQ~K~~ 700 (965)
+.+.+..
T Consensus 103 ea~~~~k 109 (146)
T PRK07720 103 EKNIEVK 109 (146)
T ss_pred HHHHHHH
Confidence 4444433
No 443
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=88.95 E-value=3.2 Score=49.33 Aligned_cols=6 Identities=50% Similarity=1.127 Sum_probs=3.3
Q ss_pred cccCCC
Q 002108 754 ELPFGW 759 (965)
Q Consensus 754 E~~~g~ 759 (965)
.+|.|.
T Consensus 152 d~P~Gl 157 (472)
T TIGR03752 152 DLPVGL 157 (472)
T ss_pred CCCccc
Confidence 555554
No 444
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=88.88 E-value=3.1 Score=49.86 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=17.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002108 676 KQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (965)
Q Consensus 676 KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~ 710 (965)
+++.+|...+..++..+++++.++.+|+.+|.++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344444444555555555555555555555533
No 445
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=88.71 E-value=13 Score=43.97 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=13.9
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHH
Q 002108 711 GESGDGTLQQHADHIQNELEELVKI 735 (965)
Q Consensus 711 ~~~~n~~LKeri~~iNsel~eL~K~ 735 (965)
++.+-.+|+.+|+--+.+++.|.|.
T Consensus 244 ~~del~Sle~q~~~s~~qldkL~kt 268 (447)
T KOG2751|consen 244 HQDELDSLEAQIEYSQAQLDKLRKT 268 (447)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhh
Confidence 4444455666666555566555543
No 446
>PF14282 FlxA: FlxA-like protein
Probab=88.66 E-value=1.9 Score=41.51 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=11.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 002108 676 KQSGDVASKLTLEEATFRDIQEKKM 700 (965)
Q Consensus 676 KQv~eLEsqLa~~Ea~LqDiQ~K~~ 700 (965)
+++..|+.+|.++++.|..++.++.
T Consensus 51 ~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 51 QQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 447
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=88.65 E-value=10 Score=45.48 Aligned_cols=21 Identities=14% Similarity=-0.080 Sum_probs=10.2
Q ss_pred CCCCccCCC--CCCCCccccccC
Q 002108 929 DEPSWGTFD--THYDAESVWGFD 949 (965)
Q Consensus 929 de~~w~~fd--~~~d~~svwg~~ 949 (965)
-+++|--|| +.-|+.-+-+|-
T Consensus 528 ~~tsw~q~a~~y~~~ilq~r~~~ 550 (596)
T KOG4360|consen 528 TLTSWQQLAQPYLGDILQPRPGV 550 (596)
T ss_pred cchHHHHHhhhhccccccCCCch
Confidence 456677443 334444444443
No 448
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=88.62 E-value=7.7 Score=44.02 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=21.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Q 002108 656 RVSGDKREVELLAKKYEEKYKQSGDVAS--KLTLEEATFRDI 695 (965)
Q Consensus 656 eisalKRevqsLr~eyEee~KQv~eLEs--qLa~~Ea~LqDi 695 (965)
||-.|+..+++||+++..+++++..=.+ +|+..-+.|+++
T Consensus 252 qi~~LkarieSlrkql~qe~q~isag~~~~sl~~qaAefq~l 293 (372)
T COG3524 252 QIPGLKARIESLRKQLLQEKQAISAGGSSQSLSNQAAEFQRL 293 (372)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHH
Confidence 3445566666666666666665544333 344444444444
No 449
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=88.61 E-value=16 Score=40.83 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 659 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 659 alKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
..+.+++.+..++.+..|.++++..++.++.++|.++..+-..|...+.-
T Consensus 204 ~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~ 253 (269)
T PF05278_consen 204 LKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKS 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555666667777777666666666666665555555554
No 450
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=88.59 E-value=13 Score=39.30 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=23.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 606 KEATEADKKVEELEKEILTSREKIQFCSTKMQELILYK 643 (965)
Q Consensus 606 qeaeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~k 643 (965)
++|.|.+.+... -|..++.|+..|+++..+|+.+.
T Consensus 5 ~a~qe~Qq~qa~---Lv~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 5 DAYQEEQQRQAQ---LVQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345554443322 35778888888988888888776
No 451
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=88.58 E-value=10 Score=38.79 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002108 689 EATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 689 Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
+..+..|+.++.+|..++++
T Consensus 93 ~eAie~l~k~~~~l~~~~~~ 112 (145)
T COG1730 93 DEAIEFLKKRIEELEKAIEK 112 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666
No 452
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=88.54 E-value=11 Score=43.40 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Q 002108 691 TFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQYGLRA 747 (965)
Q Consensus 691 ~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l~E~~qq~Gl~~ 747 (965)
.++.++.++..|.+.+.+ .|++++.+...|..|+++..--.+.+|+..
T Consensus 109 ~~~el~~~k~~l~~~~~~---------k~~~L~~l~~~L~~l~~a~~plq~~l~~~~ 156 (355)
T PF09766_consen 109 QLKELEQRKKKLQQENKK---------KKKFLDSLPPQLKSLKKAAKPLQEYLGLPH 156 (355)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHhHHHHHHHHHHHHHHHHHhCCCc
Confidence 345555555555555555 777888888888888877777777777665
No 453
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=88.50 E-value=12 Score=42.43 Aligned_cols=81 Identities=12% Similarity=0.186 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHH
Q 002108 629 IQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEK--------------YKQSGDVASKLTLEEATFRD 694 (965)
Q Consensus 629 i~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee--------------~KQv~eLEsqLa~~Ea~LqD 694 (965)
++.+...+++|..-..+|.+.|.+....+..-+++.+.+|.+|... .+++..+...|..+...=..
T Consensus 72 ~~~l~~~~~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~~w~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~ 151 (342)
T cd08915 72 LDNIEQSFKELSKLRQNVEELLQECEELLEEEAAEDDQLRAKFGTLRWRRPSSDEAAKELYEKVTKLRGYLEQASNSDNE 151 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3456666777777777777777777777777777777777777542 13333344444444444445
Q ss_pred HHHHHHHHHHHHHHH
Q 002108 695 IQEKKMELYQAILKM 709 (965)
Q Consensus 695 iQ~K~~ELe~AL~~~ 709 (965)
+..++.+...-|.-|
T Consensus 152 l~~~~~~~~~~l~lL 166 (342)
T cd08915 152 VLQCYESIDPNLVLL 166 (342)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555554544444
No 454
>PRK12705 hypothetical protein; Provisional
Probab=88.48 E-value=35 Score=41.44 Aligned_cols=15 Identities=7% Similarity=0.034 Sum_probs=5.9
Q ss_pred HHHhhhhhhHHHHHH
Q 002108 642 YKSRCDNRLNEITER 656 (965)
Q Consensus 642 ~ksraeqeL~el~ee 656 (965)
++.++++++++.+.+
T Consensus 64 ~~~~~e~e~~~~~~~ 78 (508)
T PRK12705 64 ERNQQRQEARREREE 78 (508)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444443333
No 455
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=88.34 E-value=24 Score=37.26 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=27.8
Q ss_pred hhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002108 647 DNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE 689 (965)
Q Consensus 647 eqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~E 689 (965)
..+|.-++++|..+...+++|+.++-.+-..+++|.+.|...|
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~ee 120 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEE 120 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 4456666666677777777777666666666666666664333
No 456
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=88.25 E-value=11 Score=40.02 Aligned_cols=30 Identities=33% Similarity=0.323 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 613 KKVEELEKEILTSREKIQFCSTKMQELILY 642 (965)
Q Consensus 613 kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ 642 (965)
.++..++.++.+++.++..++.++++....
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~ 98 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKKG 98 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334555555555566666666665555333
No 457
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.25 E-value=3.3 Score=49.77 Aligned_cols=122 Identities=19% Similarity=0.199 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHH--------------HHHHHHHHHHHH
Q 002108 632 CSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL--------------TLEEATFRDIQE 697 (965)
Q Consensus 632 y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqL--------------a~~Ea~LqDiQ~ 697 (965)
++.....|+.+|..--|+|.+.+++++.++.+-++|...||+-.-.-..|+..+ ..+|..|+
T Consensus 586 ~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk---- 661 (741)
T KOG4460|consen 586 IQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFK---- 661 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHH----
Confidence 344444555555555566666777777777777777777766553333333331 12221111
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhC--ccccccccccccCCCCCCcccccccchh
Q 002108 698 KKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQYG--LRAKPTLLVELPFGWQPGIQEGTADWDE 772 (965)
Q Consensus 698 K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l~E~~qq~G--l~~K~~~~~E~~~g~~~~~qe~a~~w~e 772 (965)
..|+- +-.+.+.+.+-++.+++..+..++++| +.+-+.-..|+|..=+..||+-.++-.+
T Consensus 662 ------~Elq~---------~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~~iqsiL~~L~~ 723 (741)
T KOG4460|consen 662 ------KELQL---------IPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRKCIQSILKELGE 723 (741)
T ss_pred ------HHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHH
Confidence 11111 223334444444445555555666666 3334555667776666677777766655
No 458
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=88.24 E-value=26 Score=36.18 Aligned_cols=99 Identities=13% Similarity=0.278 Sum_probs=53.4
Q ss_pred HhHHHhHH-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 002108 603 AKLKEATE-ADKKVEELEKEILTSREKIQF----CSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQ 677 (965)
Q Consensus 603 s~~qeaeE-a~kKl~eaE~ei~~~~eKi~~----y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQ 677 (965)
+.|+++++ +++|.-++-..++.....++. |....++|..-..-.-.++.-+..+|...+|++..|.+-|+.+.+.
T Consensus 34 s~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkE 113 (159)
T PF04949_consen 34 SAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKE 113 (159)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455543 445444444333333333333 3333334444444455567777888888888888888777766665
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 678 SGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 678 v~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
.++..+. |+..+..+..|-..|..
T Consensus 114 ykealea-------~nEknkeK~~Lv~~L~e 137 (159)
T PF04949_consen 114 YKEALEA-------FNEKNKEKAQLVTRLME 137 (159)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 5554333 44444444444444444
No 459
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=88.21 E-value=21 Score=47.25 Aligned_cols=24 Identities=8% Similarity=0.225 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 002108 661 KREVELLAKKYEEKYKQSGDVASK 684 (965)
Q Consensus 661 KRevqsLr~eyEee~KQv~eLEsq 684 (965)
..++..|+.++....+.+.++.++
T Consensus 884 e~~~~~l~e~~~~~~s~~~e~~~~ 907 (1294)
T KOG0962|consen 884 EEDIEELSEEITRLDSKVKELLER 907 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhh
Confidence 333334444444444444444433
No 460
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=88.19 E-value=12 Score=45.18 Aligned_cols=59 Identities=8% Similarity=0.150 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002108 685 LTLEEATFRDIQEKKMELYQAILKME--GESGDGTLQQHADHIQNELEELVKILNDRCKQY 743 (965)
Q Consensus 685 La~~Ea~LqDiQ~K~~ELe~AL~~~~--~~~~n~~LKeri~~iNsel~eL~K~l~E~~qq~ 743 (965)
....+.+|.++++++.+|..-+..-+ .......+-.||..++..|.+-.+.+.++|--+
T Consensus 94 m~~lD~rLvevre~L~~irr~q~~q~~erk~~~qe~~~rl~~L~~~Lrqee~~re~a~~aL 154 (531)
T PF15450_consen 94 MQQLDKRLVEVREALTQIRRKQALQDSERKGSEQEAGLRLSKLQDMLRQEEQGREDACSAL 154 (531)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44455566666666666554433322 222334555666666666666666666666543
No 461
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=88.18 E-value=49 Score=39.14 Aligned_cols=56 Identities=13% Similarity=0.268 Sum_probs=43.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 002108 620 KEILTSREKIQ-FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY 675 (965)
Q Consensus 620 ~ei~~~~eKi~-~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~ 675 (965)
++|......++ .+++.+.+++.-+.+.+..|..+.++|......|+.|+..|-++.
T Consensus 263 n~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~ 319 (421)
T KOG2685|consen 263 NDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKE 319 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccc
Confidence 34444444444 588889999999999999999999999999999998887766654
No 462
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=88.16 E-value=9 Score=46.17 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=12.3
Q ss_pred hhhhhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 002108 645 RCDNRLNEITERVSGDKREVELLAKKYEEK 674 (965)
Q Consensus 645 raeqeL~el~eeisalKRevqsLr~eyEee 674 (965)
.+..+|++...++..++.|++.-|.-||++
T Consensus 459 ~l~eeL~~a~~~i~~LqDEL~TTr~NYE~Q 488 (518)
T PF10212_consen 459 SLEEELKEANQNISRLQDELETTRRNYEEQ 488 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 333334444444444444444444444433
No 463
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=88.15 E-value=31 Score=37.28 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=31.8
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHH
Q 002108 596 EEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVEL 666 (965)
Q Consensus 596 ee~~~Lns~~qeaeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqs 666 (965)
|-+..++.+..+.--.-.++.++...+.+...++..++..+..-......|+++|...+.++.-++..+..
T Consensus 21 e~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~ 91 (202)
T PF06818_consen 21 ESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQ 91 (202)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhh
Confidence 33444444433333333344444444444444444444444444444555666665554444444433333
No 464
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=87.92 E-value=11 Score=40.22 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH---HHHHHHHHhhCccccc
Q 002108 689 EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV---KILNDRCKQYGLRAKP 749 (965)
Q Consensus 689 Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~---K~l~E~~qq~Gl~~K~ 749 (965)
|..+.+|+.++.+|+.+.+. +++..+....++..|+ ..+++.|...-+.+..
T Consensus 130 e~~i~~Le~ki~el~~~~~~---------~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQAAK---------LKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666655 5555555556666666 5666666666555533
No 465
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=87.86 E-value=29 Score=34.62 Aligned_cols=84 Identities=12% Similarity=0.149 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH------HHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002108 617 ELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEIT------ERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 690 (965)
Q Consensus 617 eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~------eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea 690 (965)
.+..+++..+.+++.+..+++.|..|+....+++.... .++-....=+..|...|....+.+..++..+.....
T Consensus 20 ~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~ 99 (147)
T PRK05689 20 QAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAITQQRQQLTQWTQKVDNARK 99 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666666666655554321 122233344566777777777777777766655555
Q ss_pred HHHHHHHHHH
Q 002108 691 TFRDIQEKKM 700 (965)
Q Consensus 691 ~LqDiQ~K~~ 700 (965)
.+.+...+..
T Consensus 100 ~~~~a~~~~k 109 (147)
T PRK05689 100 YWQEKKQRLE 109 (147)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 466
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=87.85 E-value=5.1 Score=45.55 Aligned_cols=65 Identities=20% Similarity=0.265 Sum_probs=46.8
Q ss_pred HhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 644 SRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 644 sraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
...+|+-+.+..++..||.+++.+...+..-+.++.++.+.+....+..--||.+..||.++|-+
T Consensus 136 aQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~Q 200 (405)
T KOG2010|consen 136 AQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQ 200 (405)
T ss_pred HhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777788888888888887777777788777777766666666666666666555544
No 467
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=87.83 E-value=20 Score=40.59 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002108 690 ATFRDIQEKKMELYQAI 706 (965)
Q Consensus 690 a~LqDiQ~K~~ELe~AL 706 (965)
..+..++.++..++.++
T Consensus 159 ~~~~~a~~~l~~a~~~~ 175 (346)
T PRK10476 159 TAQRDAEVSLNQALLQA 175 (346)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444333333333
No 468
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=87.75 E-value=4.8 Score=36.27 Aligned_cols=59 Identities=20% Similarity=0.166 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 002108 617 ELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY 675 (965)
Q Consensus 617 eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~ 675 (965)
.+.+.+..+.+|++.+..-+..|......+...|...-.++..++.+++.|++++++..
T Consensus 9 ~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 9 TLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444445556666666667777777777777777788888888888887766543
No 469
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=87.74 E-value=42 Score=36.25 Aligned_cols=106 Identities=16% Similarity=0.238 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH------HhHHHHHHHH-------HHHHHHH
Q 002108 632 CSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDV------ASKLTLEEAT-------FRDIQEK 698 (965)
Q Consensus 632 y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eL------EsqLa~~Ea~-------LqDiQ~K 698 (965)
|+.++..|..+-..|+..-.++..+|.+.+.--+.|=.|-++++.+..+- +.+|+.+..+ ++.++.+
T Consensus 62 Le~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y~~~sLR~~S~~kL~~tr~~Y~~L~~aM~~Ae~k 141 (201)
T PF11172_consen 62 LEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQELDQYSNASLRRASEQKLAETRRRYAQLIKAMRRAESK 141 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666677777777777777777777777777776766666666555322 1223333333 3344444
Q ss_pred HHHHHHHHHHHh---cCC----CCchHHHHHHHHHHHHHHHHHHHH
Q 002108 699 KMELYQAILKME---GES----GDGTLQQHADHIQNELEELVKILN 737 (965)
Q Consensus 699 ~~ELe~AL~~~~---~~~----~n~~LKeri~~iNsel~eL~K~l~ 737 (965)
++-+..+|..-. .-+ +-+.||-+...+..+++.|.+..+
T Consensus 142 m~PVL~~~~D~vL~LKHNLNA~AI~sL~~e~~~~~~di~~Li~~m~ 187 (201)
T PF11172_consen 142 MQPVLAAFRDQVLYLKHNLNAQAIASLQGEFSSIESDISQLIKEME 187 (201)
T ss_pred cChHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443311 112 226799999999999988875443
No 470
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=87.74 E-value=22 Score=41.33 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=13.0
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 002108 716 GTLQQHADHIQNELEELVKIL 736 (965)
Q Consensus 716 ~~LKeri~~iNsel~eL~K~l 736 (965)
..++.++.....++.+++..+
T Consensus 230 ~~~~~~l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 230 ETVEARIKEARYEIEELENKL 250 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666666554
No 471
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=87.64 E-value=23 Score=32.67 Aligned_cols=37 Identities=5% Similarity=0.180 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002108 659 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDI 695 (965)
Q Consensus 659 alKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDi 695 (965)
...+-+..|...+....+.+..++..+......|...
T Consensus 49 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a 85 (123)
T PF02050_consen 49 NYQRYISALEQAIQQQQQELERLEQEVEQAREELQEA 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455444444444444444443333333333
No 472
>PF15456 Uds1: Up-regulated During Septation
Probab=87.59 E-value=12 Score=37.35 Aligned_cols=93 Identities=18% Similarity=0.258 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002108 615 VEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVS----GDKREVELLAKKYEEKYKQSGDVASKLTLEEA 690 (965)
Q Consensus 615 l~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeis----alKRevqsLr~eyEee~KQv~eLEsqLa~~Ea 690 (965)
|+++.+|+..+.+.+++++.++. ++.+...+-..|..+-..-. .....+..-..++.+-.+.|.++..+|.-+|.
T Consensus 24 Ve~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~ 102 (124)
T PF15456_consen 24 VEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKLEN 102 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55555666666666666666666 55544444333333310000 00112222233344555667777777778888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002108 691 TFRDIQEKKMELYQAILK 708 (965)
Q Consensus 691 ~LqDiQ~K~~ELe~AL~~ 708 (965)
++.+++.++-|=.++...
T Consensus 103 R~~~~~~rLLeH~AavL~ 120 (124)
T PF15456_consen 103 RLAEVRQRLLEHTAAVLQ 120 (124)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888777776665
No 473
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=87.59 E-value=0.44 Score=45.68 Aligned_cols=77 Identities=18% Similarity=0.221 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002108 634 TKMQELILYKSRCDNRLNEITERV-SGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (965)
Q Consensus 634 sKmQELq~~ksraeqeL~el~eei-salKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~ 710 (965)
.+..+++..+.+.+.+|.+++..+ .+.+.||..-|.+...-......|+.+|.+++..+..+|.++.+|..-+..|.
T Consensus 8 ~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~~~ 85 (100)
T PF06428_consen 8 ERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMESME 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334445556666666666666555 55666666666555555555666777777777777777777777776666654
No 474
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=87.50 E-value=46 Score=36.03 Aligned_cols=40 Identities=8% Similarity=0.169 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Q 002108 690 ATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVK 734 (965)
Q Consensus 690 a~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K 734 (965)
..+.+...++.+.++..++|.. ...++|+..|.+++++.+
T Consensus 118 k~~~ey~~~l~~~eqry~aLK~-----hAeekL~~ANeei~~v~~ 157 (207)
T PF05010_consen 118 KCIEEYEERLKKEEQRYQALKA-----HAEEKLEKANEEIAQVRS 157 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 3455555566656655555221 123567777888887773
No 475
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=87.49 E-value=23 Score=41.11 Aligned_cols=10 Identities=10% Similarity=0.335 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q 002108 724 HIQNELEELV 733 (965)
Q Consensus 724 ~iNsel~eL~ 733 (965)
.|..|++.|+
T Consensus 177 Ala~Di~~L~ 186 (372)
T PF04375_consen 177 ALAQDIAALR 186 (372)
T ss_pred HHHHHHHHHH
Confidence 3445555554
No 476
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=87.42 E-value=43 Score=40.72 Aligned_cols=17 Identities=47% Similarity=0.610 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q 002108 660 DKREVELLAKKYEEKYK 676 (965)
Q Consensus 660 lKRevqsLr~eyEee~K 676 (965)
.+++...|+++|+++++
T Consensus 316 ~~~~~~~l~~~~~~~L~ 332 (582)
T PF09731_consen 316 FEREREELEEKYEEELR 332 (582)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444445555555543
No 477
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=87.40 E-value=23 Score=41.87 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=23.6
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 002108 439 QKYTKVFVQVDIDRDGKITGEQAYNLFL 466 (965)
Q Consensus 439 ~ry~~~F~~lDkD~dG~ISg~Elr~~f~ 466 (965)
+.++.+-+.+|.|++|-|..+|--+||+
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFlr 95 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFLR 95 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHHH
Confidence 3456678899999999999999888884
No 478
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=87.38 E-value=38 Score=35.81 Aligned_cols=83 Identities=8% Similarity=0.147 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 002108 636 MQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGD 715 (965)
Q Consensus 636 mQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n 715 (965)
++++-..+.++..++......+...+..+++|+..-.....++..++..|..+|.+...++.++..+.
T Consensus 123 vk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is------------ 190 (236)
T PF09325_consen 123 VKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEIS------------ 190 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 33444444455555555555555555555555544333334444444444444444444444444332
Q ss_pred chHHHHHHHHHHHHH
Q 002108 716 GTLQQHADHIQNELE 730 (965)
Q Consensus 716 ~~LKeri~~iNsel~ 730 (965)
..+|.++++.+.+..
T Consensus 191 ~~~k~E~~rf~~~k~ 205 (236)
T PF09325_consen 191 ENIKKELERFEKEKV 205 (236)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346667777775544
No 479
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.32 E-value=3.3 Score=49.30 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHH
Q 002108 623 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAK 669 (965)
Q Consensus 623 ~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~ 669 (965)
-...+++..|++.--.-..+..++.+++.++.+||-.+.+.++-||+
T Consensus 358 ~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~ 404 (508)
T KOG3091|consen 358 NAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRK 404 (508)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444455555333334555666666778888888777777776654
No 480
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=87.28 E-value=38 Score=38.94 Aligned_cols=42 Identities=29% Similarity=0.215 Sum_probs=32.4
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002108 648 NRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE 689 (965)
Q Consensus 648 qeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~E 689 (965)
+-|.+.+++...++.+++.|+++|.+-..+++-|-.+++..+
T Consensus 72 ~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 72 QLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 556777888888888888888888888888777777655544
No 481
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=87.25 E-value=30 Score=33.51 Aligned_cols=13 Identities=38% Similarity=0.164 Sum_probs=4.8
Q ss_pred HHHHHHHHHHhhh
Q 002108 635 KMQELILYKSRCD 647 (965)
Q Consensus 635 KmQELq~~ksrae 647 (965)
+-+.|.....+.+
T Consensus 40 ~e~~l~~~~~~f~ 52 (126)
T PF13863_consen 40 KEQELEEDVIKFD 52 (126)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 482
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=87.23 E-value=25 Score=35.38 Aligned_cols=10 Identities=30% Similarity=0.501 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 002108 669 KKYEEKYKQS 678 (965)
Q Consensus 669 ~eyEee~KQv 678 (965)
.+|.+-+|+.
T Consensus 89 ~eYk~llk~y 98 (126)
T PF09403_consen 89 DEYKELLKKY 98 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 483
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=87.19 E-value=18 Score=43.84 Aligned_cols=36 Identities=11% Similarity=0.211 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 673 EKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (965)
Q Consensus 673 ee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~ 708 (965)
.+..-.+.|+..|...+..|.+|+.+..++.+.|..
T Consensus 372 ~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~ 407 (570)
T COG4477 372 AQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTS 407 (570)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333344555556666667777777777777777777
No 484
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=87.13 E-value=13 Score=41.69 Aligned_cols=19 Identities=16% Similarity=0.053 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002108 718 LQQHADHIQNELEELVKIL 736 (965)
Q Consensus 718 LKeri~~iNsel~eL~K~l 736 (965)
++.+++.+..+|+.++..+
T Consensus 183 ~~~~l~~~~~~l~~a~~~l 201 (331)
T PRK03598 183 AKASLAQAQAALAQAELNL 201 (331)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555656665555443
No 485
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=87.12 E-value=16 Score=40.64 Aligned_cols=106 Identities=13% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---
Q 002108 616 EELEKEILTSR-EKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEAT--- 691 (965)
Q Consensus 616 ~eaE~ei~~~~-eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~--- 691 (965)
.+.+.+|.+.+ ++.+.+..+.+. ....++..+..++..|+.++....+++..+...+..+..-
T Consensus 108 ~eI~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~ 174 (301)
T PF14362_consen 108 KEIDQKLDEIRQEKQDAIQAQVQA-------------SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGG 174 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q ss_pred ---------HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH----HHHHHHHHHHHhh
Q 002108 692 ---------FRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE----ELVKILNDRCKQY 743 (965)
Q Consensus 692 ---------LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~----eL~K~l~E~~qq~ 743 (965)
.+..++++...+++|.. |+.+++.....++ .-+..+.+.++++
T Consensus 175 tg~~G~Gp~~~~~~~~~~~~~~~l~~---------l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 230 (301)
T PF14362_consen 175 TGVPGKGPRYKEKRAQLDAAQAELDT---------LQAQIDAAIAALDAQIAARKARLDEARQAK 230 (301)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHH---------HHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
No 486
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=87.05 E-value=10 Score=47.22 Aligned_cols=131 Identities=21% Similarity=0.219 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 002108 594 SKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEE 673 (965)
Q Consensus 594 d~ee~~~Lns~~qeaeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEe 673 (965)
+......+-.++.+.+.-..+... +.+-.+...+.+..+.++.+++....++..+|+..+++|..++.++++|.
T Consensus 488 ~~~~~~~l~~llee~~~~~~~~~~-~~l~~~~~~k~~~~~q~~~~~~~~~~~~~~~l~~kke~i~q~re~~~~~~----- 561 (809)
T KOG0247|consen 488 DKNDKETLDQLLEELEKRILLRTK-EILQNNKSLKEKECRQKLMNAQLESQMLSSQLNDKKEQIEQLRDEIERLK----- 561 (809)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH-HHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-----
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH-HHHHHHHHhhCcccccc
Q 002108 674 KYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV-KILNDRCKQYGLRAKPT 750 (965)
Q Consensus 674 e~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~-K~l~E~~qq~Gl~~K~~ 750 (965)
|.....+.+++..|.. +-+..|.. |++++++.+.++++-. .....+++-.|..++..
T Consensus 562 --k~~l~~e~~~~i~E~~---------~~~~~i~~---------l~~el~eq~~~~~~~~~~~~~~~~~~~~~~~~t~ 619 (809)
T KOG0247|consen 562 --KENLTTEYSIEILEST---------EYEEEIEA---------LDQELEEQKMELQQKFSEKKKAMAKVRGILANTS 619 (809)
T ss_pred --hhhhhhhhhhhhhhcc---------hhhhhhHH---------HHHHHHhhhHHHHhhccchhHHHhhhccccCCCc
No 487
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=86.93 E-value=1.4 Score=50.78 Aligned_cols=105 Identities=21% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHH
Q 002108 625 SREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL----TLEEATFRDIQEKKM 700 (965)
Q Consensus 625 ~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqL----a~~Ea~LqDiQ~K~~ 700 (965)
.++-.+...+++..+.....++..+|+++..++.+++.+++.+++.+.+....+..+..++ .....++.++..++.
T Consensus 75 eKe~kE~~~K~~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris 154 (370)
T PF02994_consen 75 EKELKENIIKNLEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERIS 154 (370)
T ss_dssp -------------------------------------------H-------------------------HHHHHHHHHHH
T ss_pred hhhhhHhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHH
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 002108 701 ELYQAILKMEGESGDGTLQQHADHIQNELEELVKILND 738 (965)
Q Consensus 701 ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l~E 738 (965)
+|+..+.+ +...+.....++..|...+.|
T Consensus 155 ~lEd~~~~---------i~~~~~~~~k~i~~l~~kl~D 183 (370)
T PF02994_consen 155 ELEDRIEE---------IEQAIKELEKRIKKLEDKLDD 183 (370)
T ss_dssp HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---------HhhHHHHHHHHHHHHHHHHHH
No 488
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=86.92 E-value=6.5 Score=42.65 Aligned_cols=90 Identities=19% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002108 620 KEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKK 699 (965)
Q Consensus 620 ~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~ 699 (965)
.++..++.. +.+.++.+.+..+...... +.++....+.+.+.|+.+++...+..+.++.+....+-+...++.++
T Consensus 121 ~~l~~l~~~-~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Ey 195 (216)
T KOG1962|consen 121 RELATLRAN-EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEY 195 (216)
T ss_pred HHHHHHHhh-HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHH
Q 002108 700 MELYQAILKMEGESGDGTLQQHAD 723 (965)
Q Consensus 700 ~ELe~AL~~~~~~~~n~~LKeri~ 723 (965)
..|-+.-++ ||++|+
T Consensus 196 drLlee~~~---------Lq~~i~ 210 (216)
T KOG1962|consen 196 DRLLEEYSK---------LQEQIE 210 (216)
T ss_pred HHHHHHHHH---------HHHHHh
No 489
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=86.83 E-value=6.9 Score=43.17 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhH----------------------------------------------------
Q 002108 657 VSGDKREVELLAKKYEEKYKQSGDVASK---------------------------------------------------- 684 (965)
Q Consensus 657 isalKRevqsLr~eyEee~KQv~eLEsq---------------------------------------------------- 684 (965)
+++++.+++.|..++++..+-+..||..
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH---HHHHHHHH
Q 002108 685 LTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV---KILNDRCK 741 (965)
Q Consensus 685 La~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~---K~l~E~~q 741 (965)
|-+.-.+.-..+.+..|||++|-+ ++++|..+.+|++.|+ -.|.||.+
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~---------~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRK---------QQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=86.80 E-value=15 Score=43.39 Aligned_cols=111 Identities=11% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHH
Q 002108 621 EILTSREKIQFCSTKMQE-LILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK-LTLEEATFRDIQEK 698 (965)
Q Consensus 621 ei~~~~eKi~~y~sKmQE-Lq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsq-La~~Ea~LqDiQ~K 698 (965)
+..+..++++.++.+|.. +.....+..++|+.+..++. ....+..++....++..++.+ ....+..+++.+++
T Consensus 256 ~~~el~qrLd~l~~RL~~am~~~L~~~r~rL~~L~~RL~-----~~~P~~~L~~~~qrLd~L~~RL~~a~~~~L~~k~~r 330 (432)
T TIGR00237 256 NQDELLQRLDGFNVRLHRAFDTLLHQKKARLEQLVASLQ-----RQHPQNKLALQQLQFEKLEKRKQAALNKQLERTRQK 330 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002108 699 KMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQY 743 (965)
Q Consensus 699 ~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l~E~~qq~ 743 (965)
+..+.+.|.. -+-+.+|.+.+..|+.|.+.+..+.+++
T Consensus 331 L~~L~~rL~a-------LSPl~~~~~~~~~l~~~~~~l~~~~~~~ 368 (432)
T TIGR00237 331 KTRLTKRLTQ-------TNPSPQILRAQTRTEQLNRRLNALKNAQ 368 (432)
T ss_pred HHHHHHHHHh-------cCHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=86.80 E-value=43 Score=34.91 Aligned_cols=138 Identities=11% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH-HHHhhhhHHHHHHHHHHHHHHHHH
Q 002108 599 ESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEI-TERVSGDKREVELLAKKYEEKYKQ 677 (965)
Q Consensus 599 ~~Lns~~qeaeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el-~eeisalKRevqsLr~eyEee~KQ 677 (965)
....+.+++++...+.|.++..++.....+++.|..+..............+... .+.|.+.=.+...|+.++.-.-.+
T Consensus 20 ~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~ 99 (159)
T PF05384_consen 20 EIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLRER 99 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 002108 678 SGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQYGL 745 (965)
Q Consensus 678 v~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l~E~~qq~Gl 745 (965)
-..|..+--.+|-+|+.+..-+.-.+.-..+ +-.=++-+..+|.++-..+.++.++.-+
T Consensus 100 E~qLr~rRD~LErrl~~l~~tierAE~l~sq---------i~vvl~yL~~dl~~v~~~~e~~~~~q~~ 158 (159)
T PF05384_consen 100 EKQLRERRDELERRLRNLEETIERAENLVSQ---------IGVVLNYLSGDLQQVSEQIEDAQQKQQF 158 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhHHHHHHHHHHHHHhhhc
No 492
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=86.74 E-value=28 Score=35.77 Aligned_cols=121 Identities=11% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002108 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 690 (965)
Q Consensus 611 a~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea 690 (965)
...........+.+.-...-.|-.-+.++...+..+..++..+...+...+..+++|+..-......+..|+.+|..+|.
T Consensus 80 ~~~~~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~ 159 (218)
T cd07596 80 SEAQANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAES 159 (218)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 002108 691 TFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE-ELVKILNDRCKQY 743 (965)
Q Consensus 691 ~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~-eL~K~l~E~~qq~ 743 (965)
.+..+..++..+...+.. ++.+++.+.. +|+..+.+-++..
T Consensus 160 ~~~~~~~~~~~i~~~~~~------------El~~f~~~~~~dlk~~l~~~~~~q 201 (218)
T cd07596 160 ALEEARKRYEEISERLKE------------ELKRFHEERARDLKAALKEFARLQ 201 (218)
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=86.72 E-value=19 Score=37.96 Aligned_cols=100 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH------------
Q 002108 620 KEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTL------------ 687 (965)
Q Consensus 620 ~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~------------ 687 (965)
..|.+-.-|++.+..--..|......|+.+-|.+ +|++|+++++.++.--..+.-
T Consensus 22 ~~i~eg~tql~afe~~g~~L~rt~aac~fRwNs~-------------vrk~Yee~I~~AKK~Rke~kr~l~~~~~~~~~~ 88 (170)
T PRK13923 22 RHIREGGTQLKAFEEVGDALKRTAAACGFRWNSV-------------VRKQYQEQIKLAKKERKELRRQLGFSPSNLPDN 88 (170)
T ss_pred HHHhccchHHHHHHHHHHHHhhhHHHHHhHHHHH-------------HHHHHHHHHHHHHHhhHHHhhccccCCCccccc
Q ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 688 --------------------EEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCK 741 (965)
Q Consensus 688 --------------------~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l~E~~q 741 (965)
....+..++.+..+|+..+.. |+++..-++.+|..|....+.+|+
T Consensus 89 ~~~~~~~~~~~~~~it~~~v~~~e~~kl~~~~e~L~~e~~~---------L~~~~~~~~eDy~~Li~Im~rark 153 (170)
T PRK13923 89 VKTGDEIITSGISDLTLEDVLSEQIGKLQEEEEKLSWENQT---------LKQELAITEEDYRALIVIMNRARR 153 (170)
T ss_pred cccccccccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=86.72 E-value=10 Score=46.16 Aligned_cols=114 Identities=18% Similarity=0.298 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHhH
Q 002108 607 EATEADKKVEELEKEILTSREKIQ-FCSTKMQELILYKSRCDNRLNEITERVSGDKREV-ELLAKKYEEKYKQSGDVASK 684 (965)
Q Consensus 607 eaeEa~kKl~eaE~ei~~~~eKi~-~y~sKmQELq~~ksraeqeL~el~eeisalKRev-qsLr~eyEee~KQv~eLEsq 684 (965)
+.++....+.++++++.+.+.++- ....++.+......++ +.+..+..++.++| +.|+.++++. +..+
T Consensus 8 ~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~----~~L~~~~~~l~~eI~d~l~~~~~~~------i~~~ 77 (593)
T PF06248_consen 8 SKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSA----KDLIERSKSLAREINDLLQSEIENE------IQPQ 77 (593)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHhhccch------hHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 002108 685 LTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRC 740 (965)
Q Consensus 685 La~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l~E~~ 740 (965)
|.++...++.++.++.+.+.-+.- |+ +|..++..++++.+++.+..
T Consensus 78 l~~a~~e~~~L~~eL~~~~~~l~~---------L~-~L~~i~~~l~~~~~al~~~~ 123 (593)
T PF06248_consen 78 LRDAAEELQELKRELEENEQLLEV---------LE-QLQEIDELLEEVEEALKEGN 123 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HH-HHHHHHHHHHHHHHHHhcCC
No 495
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=86.67 E-value=21 Score=36.08 Aligned_cols=100 Identities=19% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHh-hhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002108 632 CSTKMQELILYKSR-CDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (965)
Q Consensus 632 y~sKmQELq~~ksr-aeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~ 710 (965)
+..++.+....+.+ ++.+++-.....+.+......|+.+ +..|..........+..+..++.+|+....+
T Consensus 3 ~~~e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e-------~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~k-- 73 (136)
T PF04871_consen 3 LKSELEEEKQLAAKILELETKLKSQAESSLEQENKRLEAE-------EKELKEAEQAAEAELEELASEVKELEAEKEK-- 73 (136)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred cCCCCchHHHHH-HHHHHHHHHHH----------HHHHHHHHhhCccc
Q 002108 711 GESGDGTLQQHA-DHIQNELEELV----------KILNDRCKQYGLRA 747 (965)
Q Consensus 711 ~~~~n~~LKeri-~~iNsel~eL~----------K~l~E~~qq~Gl~~ 747 (965)
|+++. ...+.+++.|+ +.+..|-+.+|..+
T Consensus 74 -------l~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 74 -------LKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred -------HHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCc
No 496
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=86.65 E-value=61 Score=36.53 Aligned_cols=143 Identities=11% Similarity=0.142 Sum_probs=0.0
Q ss_pred hhhcCHHHHHHHHHhHHHhHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHH
Q 002108 590 MDQLSKEEQESLNAKLKEATE---ADKKVEELE----KEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKR 662 (965)
Q Consensus 590 l~qld~ee~~~Lns~~qeaeE---a~kKl~eaE----~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKR 662 (965)
+.++.+.|+.-+...-...-| +.++|.+=- .+|.+...|+..|-..+.+++..-..+-+..+..-+.|-..+.
T Consensus 59 L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~ 138 (271)
T PF13805_consen 59 LQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREE 138 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Q 002108 663 EVELLAKKYEEKYKQSGDVASK------LTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKIL 736 (965)
Q Consensus 663 evqsLr~eyEee~KQv~eLEsq------La~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K~l 736 (965)
.|+-+|..-+.-..+|..|+.+ |..+|.+|..+.....-.|++|.. +|.+ .+..-|.--..++
T Consensus 139 sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n---------~kR~--~lKEa~~~~f~Al 207 (271)
T PF13805_consen 139 SLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSN---------IKRQ--KLKEAYSLKFDAL 207 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH--HHHHHHHHHHHHH
T ss_pred HHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHH---------hhHH--HHHHHHHHHHHHH
Q ss_pred HHHHHhh
Q 002108 737 NDRCKQY 743 (965)
Q Consensus 737 ~E~~qq~ 743 (965)
.|+|.+.
T Consensus 208 ~E~aEK~ 214 (271)
T PF13805_consen 208 IERAEKQ 214 (271)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 497
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=86.60 E-value=25 Score=39.37 Aligned_cols=133 Identities=17% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhhhhHHHHHHhhhh------------HHHHH
Q 002108 606 KEATEADKKVEELEKEILTSREKIQFC--------STKMQELILYKSRCDNRLNEITERVSGD------------KREVE 665 (965)
Q Consensus 606 qeaeEa~kKl~eaE~ei~~~~eKi~~y--------~sKmQELq~~ksraeqeL~el~eeisal------------KRevq 665 (965)
..-++.-++=.+..+++...++++... ..++.-+.++......+++....+.-++ |.+++
T Consensus 16 ~~~~~l~~eCEe~wk~me~~q~kL~l~~~e~l~~s~~ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~lgkeelq 95 (268)
T PF11802_consen 16 DAKEELIKECEELWKDMEECQNKLSLIGTETLTDSDAQLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTLGKEELQ 95 (268)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Q 002108 666 LLAKKYEEKYKQSGDVASK-----------LTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVK 734 (965)
Q Consensus 666 sLr~eyEee~KQv~eLEsq-----------La~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LKeri~~iNsel~eL~K 734 (965)
+|+.++|..+.-+.+-..+ |...+.-+..+..++.+|..+............|+.+|..+.....+|+.
T Consensus 96 kl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se~rv~~el~~K~~~~k~~~e~Ll~ 175 (268)
T PF11802_consen 96 KLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSESRVFQELKTKIEKIKEYKEKLLS 175 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 002108 735 ILND 738 (965)
Q Consensus 735 ~l~E 738 (965)
.|-|
T Consensus 176 ~Lge 179 (268)
T PF11802_consen 176 FLGE 179 (268)
T ss_pred HHHH
No 498
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=86.56 E-value=12 Score=45.19 Aligned_cols=95 Identities=14% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002108 606 KEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL 685 (965)
Q Consensus 606 qeaeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el~eeisalKRevqsLr~eyEee~KQv~eLEsqL 685 (965)
...++.-.++..++.........-..+..++...+..+..+..+|++...++..++.|++.-|.-||+++....+
T Consensus 420 ~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSE----- 494 (518)
T PF10212_consen 420 SRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSE----- 494 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 002108 686 TLEEATFRDIQEKKMELYQAILKMEGESGDGTLQ 719 (965)
Q Consensus 686 a~~Ea~LqDiQ~K~~ELe~AL~~~~~~~~n~~LK 719 (965)
.+..+..|+..-.+.|+. ||
T Consensus 495 -----HLasmNeqL~~Q~eeI~~---------LK 514 (518)
T PF10212_consen 495 -----HLASMNEQLAKQREEIQT---------LK 514 (518)
T ss_pred -----HHHHHHHHHHHHHHHHHH---------Hh
No 499
>PLN03188 kinesin-12 family protein; Provisional
Probab=86.45 E-value=20 Score=47.23 Aligned_cols=137 Identities=15% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHhHH--HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh---------------------
Q 002108 597 EQESLNAKLKEATE--ADKKVEELEKEILTSREKIQFC-------STKMQELILYKSRC--------------------- 646 (965)
Q Consensus 597 e~~~Lns~~qeaeE--a~kKl~eaE~ei~~~~eKi~~y-------~sKmQELq~~ksra--------------------- 646 (965)
|-+.++.++..|.. .-..+.-+..+|++++.|+.+| ..+..-|....-.|
T Consensus 968 e~~~~~~e~~~~~~~~d~~ErEvll~eI~dlr~qL~~~~d~s~~s~~~~~~~l~l~y~~~~~~~~~~~~i~e~~~~~~e~ 1047 (1320)
T PLN03188 968 ELKRVQDELEHYRNFYDMGEREVLLEEIQDLRSQLQYYIDSSLPSARKRNSLLKLTYSCEPSQAPPLNTIPESTDESPEK 1047 (1320)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccchhhhccchhhhhhhcCccccccccccccccccchhH
Q ss_pred ---hhhhH-------------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002108 647 ---DNRLN-------------EITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (965)
Q Consensus 647 ---eqeL~-------------el~eeisalKRevqsLr~eyEee~KQv~eLEsqLa~~Ea~LqDiQ~K~~ELe~AL~~~~ 710 (965)
..+++ ++..++.+-+.-.++||.|++.+++-.++|.+.|.++=.--..+-++|.+|++-...
T Consensus 1048 ~l~~er~~w~e~es~wislteelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~-- 1125 (1320)
T PLN03188 1048 KLEQERLRWTEAESKWISLAEELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQ-- 1125 (1320)
T ss_pred HHHHHHHHHHHHhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002108 711 GESGDGTLQQHADHIQNELEELVKILNDRCKQ 742 (965)
Q Consensus 711 ~~~~n~~LKeri~~iNsel~eL~K~l~E~~qq 742 (965)
|=+|-++|+.-+++.+|+..-|..+
T Consensus 1126 -------ll~~hr~i~egi~dvkkaaakag~k 1150 (1320)
T PLN03188 1126 -------LLARHRRIQEGIDDVKKAAARAGVR 1150 (1320)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHhccc
No 500
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=86.45 E-value=48 Score=35.79 Aligned_cols=127 Identities=17% Similarity=0.226 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002108 608 ATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEI--TERVSGDKREVELLAKKYEEKYKQSGDVASKL 685 (965)
Q Consensus 608 aeEa~kKl~eaE~ei~~~~eKi~~y~sKmQELq~~ksraeqeL~el--~eeisalKRevqsLr~eyEee~KQv~eLEsqL 685 (965)
.++....+.+++..|-.+..+++.+-++.++|-.--..-+..+..+ -+.-..+.+-+..|. +..-.++.+....
T Consensus 14 F~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~~Ls~al~~la----~~~~ki~~~~~~q 89 (224)
T cd07623 14 FEEKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHTSLSRALSQLA----EVEEKIEQLHGEQ 89 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH----HHHHHHHHHHHHH
Q ss_pred HHHH-----------------------------HHHHHHHHHHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHH
Q 002108 686 TLEE-----------------------------ATFRDIQEKKMELYQAILKME-GESGDGTLQQHADHIQNELEELVKI 735 (965)
Q Consensus 686 a~~E-----------------------------a~LqDiQ~K~~ELe~AL~~~~-~~~~n~~LKeri~~iNsel~eL~K~ 735 (965)
+..+ ..++.++..+..+.+.+.+++ .++.+ ++.+++.|+.+++..
T Consensus 90 a~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~-----K~~~~~~ev~~~e~~ 164 (224)
T cd07623 90 ADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTD-----KLDQAQQEIKEWEAK 164 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh-----HHHHHHHHHHHHHHH
Q ss_pred HHHHHHhh
Q 002108 736 LNDRCKQY 743 (965)
Q Consensus 736 l~E~~qq~ 743 (965)
..++++.+
T Consensus 165 ~~~a~~~f 172 (224)
T cd07623 165 VDRGQKEF 172 (224)
T ss_pred HHHHHHHH
Done!