BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002109
         (965 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1 J-Domain
          Length = 106

 Score =  117 bits (293), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/86 (56%), Positives = 71/86 (82%)

Query: 817 ETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCI 876
           + +D +I++W++GK GNIR+LL+T+QY+LW  SGW+PV L D+I   AV+K Y++A L +
Sbjct: 9   KNIDAKIRKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQRALLIL 68

Query: 877 HPDKVQQKGANLQQKYIAEKVFDLLK 902
           HPDK+QQKGA+  QKY+AEKVF+LL+
Sbjct: 69  HPDKLQQKGASANQKYMAEKVFELLQ 94


>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
           Binding Domain Of Bovine Auxilin
          Length = 182

 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 54/87 (62%), Gaps = 6/87 (6%)

Query: 801 RDLQAQRDQAE--RHRIAETLDVE---IKRWAAGKEGNIRALLATMQYVLWP-ESGWQPV 854
           +D +  R  AE  +  +A+ +D E   I  W  GKE NIRALL+TM  VLW  E+ W+PV
Sbjct: 64  KDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPV 123

Query: 855 SLTDLITAAAVKKCYRKATLCIHPDKV 881
            + DL+T   VKK YRKA L +HPDK 
Sbjct: 124 GMADLVTPEQVKKVYRKAVLVVHPDKA 150


>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
          Length = 114

 Score = 76.3 bits (186), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 49/76 (64%), Gaps = 4/76 (5%)

Query: 809 QAERHRIAETLDVE---IKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAA 864
           +  +  +A+ +D E   I  W  GKE NIRALL+TM  VLW  E+ W+PV + DL+T   
Sbjct: 6   EMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQ 65

Query: 865 VKKCYRKATLCIHPDK 880
           VKK YRKA L +HPDK
Sbjct: 66  VKKVYRKAVLVVHPDK 81


>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
           Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
           (810-910aa)d876c In The AdpPi State
          Length = 94

 Score = 73.6 bits (179), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 821 VEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAAVKKCYRKATLCIHPD 879
           ++I  W  GKE NIRALL+TM  VLW  E+ W+PV + DL+T   VKK YRKA L +HP 
Sbjct: 6   LKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPC 65

Query: 880 K 880
           K
Sbjct: 66  K 66


>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
           Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
           (810-910aa)d876c In The AdpPi Form #1
 pdb|2QWP|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
           Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
           (810-910aa)d876c In The AdpPi Form #2
 pdb|2QWQ|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
           Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
           (810-910aa)d876c In The Amppnp Hydrolyzed Form
 pdb|2QWR|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
           Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
           (810-910aa)d876c In The Amppnp Intact Form
          Length = 92

 Score = 72.8 bits (177), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 821 VEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAAVKKCYRKATLCIHPD 879
           ++I  W  GKE NIRALL+TM  VLW  E+ W+PV + DL+T   VKK YRKA L +HP 
Sbjct: 5   LKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPC 64

Query: 880 K 880
           K
Sbjct: 65  K 65


>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
 pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
          Length = 101

 Score = 71.2 bits (173), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 821 VEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAAVKKCYRKATLCIHPD 879
           ++I  W  GKE NIRALL+T   VLW  E+ W+PV   DL+T   VKK YRKA L +HPD
Sbjct: 8   LKILEWIEGKERNIRALLSTXHTVLWAGETKWKPVGXADLVTPEQVKKVYRKAVLVVHPD 67

Query: 880 K 880
           K
Sbjct: 68  K 68


>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
          Length = 77

 Score = 30.8 bits (68), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLL---KVQQIY 907
           +Q + L    +   +K+ YR+  L  HPDK ++ GA  + K IAE  +D+L   + ++I+
Sbjct: 6   YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAE-AYDVLSDPRKREIF 64

Query: 908 CRF 910
            R+
Sbjct: 65  DRY 67


>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
           Hcg3, A Hypothetical Protein Tmp_locus_21
          Length = 82

 Score = 30.4 bits (67), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 861 TAAAVKKCYRKATLCIHPDKVQQKGANLQQKY--IAE--KVFDLLKVQQIYCRF 910
           ++ A+KK YRK  L  HPDK  +     ++++  +AE  +V    K + IY R+
Sbjct: 22  SSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRY 75


>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
           From Homo Sapiens
          Length = 71

 Score = 30.0 bits (66), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 861 TAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIY 907
           T   +KK YRK  L  HPDK   +G   +Q   A +V    K +++Y
Sbjct: 19  TQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELY 65


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.127    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,664,899
Number of Sequences: 62578
Number of extensions: 529989
Number of successful extensions: 983
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 967
Number of HSP's gapped (non-prelim): 14
length of query: 965
length of database: 14,973,337
effective HSP length: 108
effective length of query: 857
effective length of database: 8,214,913
effective search space: 7040180441
effective search space used: 7040180441
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)