Query 002109
Match_columns 965
No_of_seqs 402 out of 931
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 16:42:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0431 Auxilin-like protein a 100.0 6.1E-40 1.3E-44 375.1 12.5 224 686-909 195-449 (453)
2 PRK09510 tolA cell envelope in 99.4 1.1E-10 2.3E-15 132.2 31.6 47 828-879 324-370 (387)
3 PTZ00121 MAEBL; Provisional 99.4 1.1E-09 2.4E-14 134.8 34.0 21 937-957 1974-1994(2084)
4 COG3064 TolA Membrane protein 99.3 3.3E-09 7.1E-14 115.2 29.7 40 827-870 323-362 (387)
5 PRK09510 tolA cell envelope in 98.8 3.6E-06 7.8E-11 96.0 30.0 18 690-707 257-274 (387)
6 TIGR02794 tolA_full TolA prote 98.6 1E-05 2.2E-10 91.7 24.7 17 829-845 284-300 (346)
7 COG3064 TolA Membrane protein 98.4 0.00012 2.6E-09 80.5 26.1 21 688-708 257-277 (387)
8 TIGR02794 tolA_full TolA prote 98.3 0.00014 3.1E-09 82.5 24.8 26 646-672 193-218 (346)
9 PTZ00266 NIMA-related protein 98.1 1.7E-05 3.8E-10 99.8 13.7 11 941-951 1005-1015(1021)
10 KOG1029 Endocytic adaptor prot 98.1 0.0015 3.2E-08 78.7 26.4 9 345-353 259-267 (1118)
11 KOG1029 Endocytic adaptor prot 97.8 0.0085 1.8E-07 72.5 27.6 22 925-946 728-751 (1118)
12 smart00271 DnaJ DnaJ molecular 97.6 5.2E-05 1.1E-09 63.7 3.6 53 851-909 4-56 (60)
13 cd06257 DnaJ DnaJ domain or J- 97.5 7E-05 1.5E-09 61.8 3.5 51 852-909 4-54 (55)
14 KOG2072 Translation initiation 97.5 0.3 6.6E-06 60.3 34.8 15 337-351 442-456 (988)
15 PF00226 DnaJ: DnaJ domain; I 97.4 0.00014 3E-09 62.3 3.2 53 852-910 4-56 (64)
16 PRK09430 djlA Dna-J like membr 97.2 0.00037 8E-09 76.6 4.4 60 851-910 203-262 (267)
17 KOG4364 Chromatin assembly fac 96.8 0.063 1.4E-06 64.6 19.1 13 899-911 673-685 (811)
18 KOG4364 Chromatin assembly fac 96.8 0.049 1.1E-06 65.4 17.6 12 920-932 752-763 (811)
19 PRK03578 hscB co-chaperone Hsc 96.6 0.0022 4.7E-08 66.6 4.7 62 859-922 19-85 (176)
20 TIGR00714 hscB Fe-S protein as 96.6 0.0021 4.5E-08 65.6 4.5 62 860-923 3-69 (157)
21 PRK05014 hscB co-chaperone Hsc 96.6 0.0026 5.7E-08 65.7 5.0 62 859-922 14-80 (171)
22 KOG1150 Predicted molecular ch 96.6 0.0019 4.2E-08 67.6 3.9 48 859-912 64-111 (250)
23 KOG2072 Translation initiation 96.4 4.2 9E-05 50.9 34.0 6 349-354 417-422 (988)
24 PRK01356 hscB co-chaperone Hsc 96.4 0.0036 7.8E-08 64.4 4.6 60 860-923 16-80 (166)
25 KOG0718 Molecular chaperone (D 96.4 0.0024 5.1E-08 73.9 3.5 54 851-908 12-65 (546)
26 PRK00294 hscB co-chaperone Hsc 96.3 0.0043 9.4E-08 64.3 4.6 61 859-921 17-82 (173)
27 PHA03102 Small T antigen; Revi 96.1 0.0068 1.5E-07 61.8 4.4 46 861-910 20-65 (153)
28 KOG0713 Molecular chaperone (D 95.8 0.0078 1.7E-07 67.7 3.9 80 851-931 19-107 (336)
29 KOG0163 Myosin class VI heavy 95.7 0.21 4.4E-06 61.1 15.4 11 873-883 1184-1194(1259)
30 PRK10266 curved DNA-binding pr 95.7 0.0065 1.4E-07 68.0 2.9 51 851-909 7-57 (306)
31 KOG4661 Hsp27-ERE-TATA-binding 95.7 0.095 2.1E-06 62.0 12.2 17 57-73 148-164 (940)
32 PRK14299 chaperone protein Dna 95.6 0.0074 1.6E-07 67.1 2.9 53 852-912 8-60 (291)
33 KOG0163 Myosin class VI heavy 95.5 0.24 5.1E-06 60.6 14.7 15 278-292 554-568 (1259)
34 KOG2891 Surface glycoprotein [ 95.5 2.4 5.1E-05 47.1 21.0 15 345-359 187-201 (445)
35 COG0484 DnaJ DnaJ-class molecu 95.4 0.012 2.5E-07 67.6 3.4 61 851-912 7-68 (371)
36 PRK14281 chaperone protein Dna 95.3 0.012 2.7E-07 68.1 3.5 54 851-911 6-59 (397)
37 PRK10767 chaperone protein Dna 95.2 0.013 2.8E-07 67.3 3.3 52 851-909 7-58 (371)
38 PRK14295 chaperone protein Dna 95.2 0.014 2.9E-07 67.6 3.3 51 851-908 12-62 (389)
39 PRK14280 chaperone protein Dna 95.0 0.016 3.4E-07 66.8 3.2 50 851-908 7-56 (376)
40 PRK14284 chaperone protein Dna 94.9 0.018 3.9E-07 66.6 3.3 54 851-911 4-57 (391)
41 PTZ00100 DnaJ chaperone protei 94.9 0.021 4.5E-07 55.8 3.1 47 851-908 68-114 (116)
42 PRK14276 chaperone protein Dna 94.9 0.018 4E-07 66.3 3.3 50 851-908 7-56 (380)
43 PRK14277 chaperone protein Dna 94.9 0.018 4E-07 66.4 3.2 52 851-909 8-59 (386)
44 PRK14278 chaperone protein Dna 94.9 0.021 4.7E-07 65.8 3.7 50 851-908 6-55 (378)
45 PRK14293 chaperone protein Dna 94.9 0.022 4.7E-07 65.6 3.7 60 851-912 6-66 (374)
46 KOG0716 Molecular chaperone (D 94.8 0.023 5.1E-07 62.3 3.5 56 855-910 38-93 (279)
47 KOG1144 Translation initiation 94.8 0.22 4.7E-06 61.2 11.6 6 831-836 470-475 (1064)
48 PRK14285 chaperone protein Dna 94.7 0.017 3.6E-07 66.4 2.4 51 851-908 6-56 (365)
49 PRK14300 chaperone protein Dna 94.7 0.021 4.6E-07 65.7 3.2 51 851-909 6-56 (372)
50 PRK14283 chaperone protein Dna 94.7 0.02 4.3E-07 66.0 3.0 59 851-911 8-67 (378)
51 PRK14297 chaperone protein Dna 94.7 0.021 4.6E-07 65.8 3.2 56 851-913 7-62 (380)
52 KOG0691 Molecular chaperone (D 94.5 0.035 7.7E-07 62.1 4.2 49 853-908 10-58 (296)
53 TIGR02349 DnaJ_bact chaperone 94.5 0.025 5.5E-07 64.4 3.2 57 853-911 5-62 (354)
54 PRK14288 chaperone protein Dna 94.5 0.026 5.7E-07 64.9 3.2 51 851-908 6-56 (369)
55 PRK14290 chaperone protein Dna 94.5 0.03 6.6E-07 64.2 3.7 57 851-913 6-62 (365)
56 PRK14296 chaperone protein Dna 94.4 0.029 6.4E-07 64.6 3.5 60 851-912 7-67 (372)
57 PTZ00037 DnaJ_C chaperone prot 94.4 0.028 6.1E-07 65.8 3.2 57 851-912 31-88 (421)
58 PRK14279 chaperone protein Dna 94.3 0.026 5.7E-07 65.4 2.7 32 851-882 12-43 (392)
59 PRK14301 chaperone protein Dna 94.2 0.029 6.3E-07 64.6 2.8 60 851-911 7-67 (373)
60 PRK14282 chaperone protein Dna 94.2 0.033 7.2E-07 64.0 3.3 62 851-912 7-69 (369)
61 PRK14291 chaperone protein Dna 94.2 0.039 8.4E-07 63.8 3.7 60 851-912 6-66 (382)
62 PRK14292 chaperone protein Dna 94.1 0.033 7.1E-07 64.0 3.1 58 852-911 6-64 (371)
63 PRK14286 chaperone protein Dna 94.1 0.035 7.6E-07 63.9 3.1 59 852-911 8-67 (372)
64 PRK14294 chaperone protein Dna 94.0 0.037 8E-07 63.6 3.1 52 851-909 7-58 (366)
65 PTZ00341 Ring-infected erythro 94.0 0.036 7.8E-07 69.6 3.1 74 851-932 576-656 (1136)
66 KOG0720 Molecular chaperone (D 93.9 0.052 1.1E-06 63.2 4.0 55 851-913 238-292 (490)
67 PRK14298 chaperone protein Dna 93.8 0.034 7.5E-07 64.1 2.5 50 851-908 8-57 (377)
68 PRK14287 chaperone protein Dna 93.6 0.051 1.1E-06 62.6 3.2 60 851-912 7-67 (371)
69 PRK01773 hscB co-chaperone Hsc 93.3 0.11 2.3E-06 54.2 4.9 60 859-920 15-80 (173)
70 PF12037 DUF3523: Domain of un 93.2 17 0.00037 40.8 27.8 8 437-444 29-36 (276)
71 KOG4661 Hsp27-ERE-TATA-binding 93.2 1.6 3.4E-05 52.3 14.3 9 124-132 234-242 (940)
72 KOG0719 Molecular chaperone (D 93.1 0.078 1.7E-06 57.2 3.5 53 851-908 17-69 (264)
73 KOG0742 AAA+-type ATPase [Post 93.0 24 0.00053 41.8 26.2 8 926-933 587-594 (630)
74 KOG0712 Molecular chaperone (D 92.9 0.094 2E-06 59.6 3.9 55 852-910 8-63 (337)
75 COG2214 CbpA DnaJ-class molecu 92.9 0.077 1.7E-06 53.9 3.0 48 855-908 13-60 (237)
76 PRK14289 chaperone protein Dna 92.7 0.076 1.6E-06 61.4 3.0 55 851-912 8-62 (386)
77 PRK07735 NADH dehydrogenase su 92.7 5.1 0.00011 46.9 17.4 6 903-908 390-395 (430)
78 KOG0721 Molecular chaperone (D 92.7 0.079 1.7E-06 56.7 2.8 54 850-903 101-154 (230)
79 KOG2891 Surface glycoprotein [ 92.5 20 0.00044 40.0 20.7 6 336-341 149-154 (445)
80 KOG0717 Molecular chaperone (D 92.4 0.097 2.1E-06 61.1 3.3 49 854-908 14-62 (508)
81 KOG0550 Molecular chaperone (D 92.4 0.21 4.6E-06 57.9 6.0 81 829-916 351-442 (486)
82 PHA02624 large T antigen; Prov 92.2 0.11 2.4E-06 63.2 3.6 47 861-911 26-72 (647)
83 KOG2412 Nuclear-export-signal 89.8 6 0.00013 47.6 14.4 14 748-761 360-373 (591)
84 TIGR03835 termin_org_DnaJ term 89.4 0.29 6.3E-06 60.6 3.6 59 852-912 6-65 (871)
85 KOG2412 Nuclear-export-signal 89.2 7.7 0.00017 46.7 14.7 9 351-359 3-11 (591)
86 PF02029 Caldesmon: Caldesmon; 89.2 8.7 0.00019 46.3 15.4 15 815-829 449-463 (492)
87 COG5407 SEC63 Preprotein trans 89.1 0.45 9.7E-06 55.6 4.6 86 823-913 74-168 (610)
88 KOG3054 Uncharacterized conser 87.1 5.1 0.00011 43.9 10.6 10 748-757 216-225 (299)
89 TIGR03319 YmdA_YtgF conserved 85.2 1E+02 0.0022 37.7 24.2 10 764-773 250-259 (514)
90 KOG3054 Uncharacterized conser 84.6 8.2 0.00018 42.4 10.7 14 338-351 4-23 (299)
91 KOG0624 dsRNA-activated protei 82.3 3.3 7.1E-05 47.7 6.9 54 851-908 397-450 (504)
92 PRK00106 hypothetical protein; 82.1 1.4E+02 0.003 36.9 25.7 12 832-843 332-343 (535)
93 KOG0715 Molecular chaperone (D 81.4 1.4 3.1E-05 49.4 3.8 60 844-911 39-98 (288)
94 PRK12704 phosphodiesterase; Pr 80.9 1.5E+02 0.0032 36.4 24.8 11 765-775 257-267 (520)
95 KOG0742 AAA+-type ATPase [Post 80.9 1.3E+02 0.0029 36.0 19.6 6 914-919 512-517 (630)
96 PRK00106 hypothetical protein; 77.5 1.9E+02 0.0041 35.7 28.3 7 764-770 271-277 (535)
97 PF00769 ERM: Ezrin/radixin/mo 77.1 1.2E+02 0.0027 33.4 18.5 6 816-821 210-215 (246)
98 KOG2002 TPR-containing nuclear 75.5 13 0.00027 47.7 9.7 19 326-344 669-687 (1018)
99 PRK12472 hypothetical protein; 74.2 66 0.0014 38.8 14.5 25 417-441 150-174 (508)
100 PRK12704 phosphodiesterase; Pr 73.4 2.3E+02 0.005 34.8 25.6 9 870-878 400-408 (520)
101 KOG0714 Molecular chaperone (D 72.6 2.1 4.6E-05 45.8 1.9 38 863-906 18-55 (306)
102 KOG2441 mRNA splicing factor/p 72.0 61 0.0013 38.1 13.2 19 448-466 280-298 (506)
103 KOG0723 Molecular chaperone (D 71.8 3.5 7.5E-05 40.1 2.9 43 854-907 62-104 (112)
104 PRK12472 hypothetical protein; 70.4 1.3E+02 0.0029 36.4 15.8 14 699-712 327-340 (508)
105 COG1076 DjlA DnaJ-domain-conta 69.1 4.6 0.0001 41.9 3.5 47 861-907 126-172 (174)
106 COG5269 ZUO1 Ribosome-associat 67.4 4.2 9E-05 45.2 2.8 52 861-913 59-113 (379)
107 PF09726 Macoilin: Transmembra 65.1 3.9E+02 0.0084 34.1 23.1 8 66-73 165-172 (697)
108 KOG1924 RhoA GTPase effector D 63.9 19 0.00041 45.3 7.5 26 128-154 385-410 (1102)
109 PTZ00491 major vault protein; 63.7 2.2E+02 0.0047 36.9 16.6 6 743-748 831-836 (850)
110 PF15195 TMEM210: TMEM210 fami 63.5 5 0.00011 38.2 2.1 9 338-346 79-87 (116)
111 KOG2002 TPR-containing nuclear 61.9 1E+02 0.0022 40.2 13.3 8 345-352 610-617 (1018)
112 PF02731 SKIP_SNW: SKIP/SNW do 61.0 50 0.0011 34.4 8.9 18 448-465 107-124 (158)
113 KOG1830 Wiskott Aldrich syndro 54.8 66 0.0014 38.2 9.5 10 18-27 144-153 (518)
114 KOG3654 Uncharacterized CH dom 53.4 64 0.0014 38.9 9.2 19 852-870 643-662 (708)
115 PF07946 DUF1682: Protein of u 49.7 64 0.0014 36.8 8.5 14 345-358 194-207 (321)
116 KOG0162 Myosin class I heavy c 47.7 67 0.0014 40.5 8.4 6 361-366 1040-1045(1106)
117 PF09756 DDRGK: DDRGK domain; 45.1 7.1 0.00015 41.5 0.0 7 750-756 117-123 (188)
118 KOG1789 Endocytosis protein RM 44.8 23 0.0005 46.0 4.1 37 862-908 1299-1335(2235)
119 KOG2253 U1 snRNP complex, subu 41.6 8.1E+02 0.017 31.1 16.1 31 818-862 592-622 (668)
120 KOG3654 Uncharacterized CH dom 41.4 1.2E+02 0.0026 36.8 9.0 8 686-693 456-463 (708)
121 KOG3634 Troponin [Cytoskeleton 40.7 2.2E+02 0.0048 33.0 10.6 9 874-882 294-302 (361)
122 KOG2689 Predicted ubiquitin re 40.0 3.6E+02 0.0078 30.7 11.9 6 823-828 236-241 (290)
123 KOG2253 U1 snRNP complex, subu 39.1 5E+02 0.011 32.8 13.9 23 833-855 563-589 (668)
124 PRK12705 hypothetical protein; 38.5 8.5E+02 0.018 30.1 20.8 12 765-776 245-256 (508)
125 KOG3634 Troponin [Cytoskeleton 38.1 1.9E+02 0.0042 33.5 9.7 7 418-424 67-73 (361)
126 PF14687 DUF4460: Domain of un 35.2 53 0.0012 32.2 4.3 46 861-909 7-52 (112)
127 COG5178 PRP8 U5 snRNP spliceos 34.9 25 0.00053 45.9 2.3 12 892-903 603-614 (2365)
128 COG4942 Membrane-bound metallo 28.4 1.1E+03 0.024 28.4 33.3 6 754-759 309-314 (420)
129 KOG0722 Molecular chaperone (D 27.0 31 0.00066 38.5 1.2 30 854-883 39-68 (329)
130 KOG1785 Tyrosine kinase negati 26.0 98 0.0021 36.6 5.0 27 346-372 516-544 (563)
131 PF05038 Cytochrom_B558a: Cyto 25.8 21 0.00045 37.6 -0.3 19 345-363 130-156 (186)
132 PF04747 DUF612: Protein of un 25.2 1E+03 0.023 28.4 12.7 9 924-932 454-462 (510)
133 PRK14474 F0F1 ATP synthase sub 23.2 1E+03 0.023 26.3 16.9 10 854-863 212-221 (250)
134 PF06098 Radial_spoke_3: Radia 22.8 1.2E+03 0.026 26.8 12.7 6 348-353 89-94 (291)
135 PLN02316 synthase/transferase 22.8 2.1E+02 0.0046 38.0 7.7 10 246-255 139-148 (1036)
136 PF06706 CTV_P6: Citrus triste 22.7 12 0.00025 31.0 -2.2 19 925-944 6-24 (51)
137 KOG2675 Adenylate cyclase-asso 22.5 58 0.0013 38.8 2.4 7 146-152 105-111 (480)
138 PF01213 CAP_N: Adenylate cycl 22.1 30 0.00066 39.6 0.1 14 143-156 98-111 (312)
139 PF08628 Nexin_C: Sorting nexi 20.6 2.9E+02 0.0063 26.5 6.4 72 830-903 36-110 (113)
140 KOG4691 Uncharacterized conser 20.4 1.1E+03 0.025 25.6 11.3 8 356-363 31-38 (227)
No 1
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=100.00 E-value=6.1e-40 Score=375.05 Aligned_cols=224 Identities=43% Similarity=0.595 Sum_probs=175.9
Q ss_pred hhccccccccccCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCc-------cCCCCCCC-cccccCCCcccccchhhhhc
Q 002109 686 QKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPAR-------RTSVGASS-NMRKASSTTNIVDDLSSIFG 757 (965)
Q Consensus 686 ~~~~~dlesfFs~~Sr~sSaPrsr~~s~ds~fdsq~q~~~~~~~-------r~sss~S~-s~rkasSs~ni~DDlss~Fg 757 (965)
....+.|++++....+.++++..+.+.++.|.+...-+..+... ...++... +...+...++.......+|+
T Consensus 195 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 274 (453)
T KOG0431|consen 195 QATAPKADSFFNSTSRGASAPADPFADLDDLSSGSNASKSGSSSDLSSRVSPGITETTDSPPSKTSSPPNQQKKSPPDFQ 274 (453)
T ss_pred cCCCccccccccccccCCCCCCCccccccchhhhcccCCCCCcccccCCCCCCCCCCCCCchhhhcccccchhccchhhh
Confidence 45666788899888888888887777766654443333222111 11111111 13344444455555444444
Q ss_pred cCCC-------------CCC------ccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HH
Q 002109 758 AAGS-------------SAG------EFQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAER----HR 814 (965)
Q Consensus 758 ~~~~-------------s~~------~f~~~~~e~~~rr~a~~~r~~~~~~r~~k~l~ek~~r~~~~~~eq~e~----~~ 814 (965)
..+- -.. .+..+-|+..+++..+..++..+..+....+.++..+|++..++++++ .+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~k~~~~~ae~~~e~~r 354 (453)
T KOG0431|consen 275 AKPSSESPEASTQKRPNYAQKRSDVPPGNTERGKRAESSSTRTKKQMDTFSDLLNPQGFKSTSDEKRPREIAEMRKELSR 354 (453)
T ss_pred cccCccchhhccccccchhccCCCCCcccccccccccccccccchhhhhhhhhhccccccchhhhhhHHHHHHHHHHHHh
Confidence 4310 011 122345778888999999999999999999999999999999999999 89
Q ss_pred hHHhHHHHHHHHhccccccHHHHhhccccccCCCCCCccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHH
Q 002109 815 IAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIA 894 (965)
Q Consensus 815 l~d~~~~ki~~W~~gke~nIRaLLssL~~VLW~~~~W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA 894 (965)
|+|+|+.+|+.|..||++|||+||+|||||||++|||++|+|.|||+|++|||+|||||||||||||+|+|++++|||||
T Consensus 355 ~~e~~d~~I~~W~~GKE~NIRALLSTLh~VLW~es~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Ia 434 (453)
T KOG0431|consen 355 LMEPLDEEIRRWSEGKEGNIRALLSTLHYVLWPESGWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIA 434 (453)
T ss_pred hcchHHHHHHHhcccccccHHHHHHHHhHhhcCccCcccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 002109 895 EKVFDLLKVQQIYCR 909 (965)
Q Consensus 895 ~~vF~~Ln~a~~~~r 909 (965)
+.||++|++||+.|.
T Consensus 435 ekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 435 EKVFDALSEAWNKFN 449 (453)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999999986
No 2
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=99.44 E-value=1.1e-10 Score=132.16 Aligned_cols=47 Identities=23% Similarity=0.167 Sum_probs=37.5
Q ss_pred ccccccHHHHhhccccccCCCCCCccCcccccchhhhHhHHhhhccccccCc
Q 002109 828 AGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPD 879 (965)
Q Consensus 828 ~gke~nIRaLLssL~~VLW~~~~W~~v~~~dl~~~~~VKk~YrKA~l~vHPD 879 (965)
.|+.|.||..|...+.|++ ...+|.++-+|...+.- ++.+.+-+-||
T Consensus 324 ~gktc~VrI~LapDG~V~s----V~~sSGd~aldrAA~~A-ar~a~lP~pP~ 370 (387)
T PRK09510 324 AGKTCTLRIKLAPDGTLLD----IKKEGGDPALCQAALAA-AKTAKIPKPPS 370 (387)
T ss_pred cCceEEEEEEEcCCCcEEe----eeeCCCCHHHHHHHHHH-HHcCCCCCCCc
Confidence 3888999999999999994 35677777888877766 88888877775
No 3
>PTZ00121 MAEBL; Provisional
Probab=99.35 E-value=1.1e-09 Score=134.75 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=14.8
Q ss_pred eeeecccchhhhcccCccccc
Q 002109 937 FCCQFDDKLLLHANMNSEKYA 957 (965)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ 957 (965)
.|||..+-.|-.-|+||..|-
T Consensus 1974 LCCSISdYCLkYFn~nS~eYy 1994 (2084)
T PTZ00121 1974 LCCSISDFCLKYFDHNSNEYY 1994 (2084)
T ss_pred hhhhHHHHHHHHcCCCchHHH
Confidence 577777777777777776663
No 4
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=99.29 E-value=3.3e-09 Score=115.18 Aligned_cols=40 Identities=25% Similarity=0.232 Sum_probs=34.3
Q ss_pred hccccccHHHHhhccccccCCCCCCccCcccccchhhhHhHHhh
Q 002109 827 AAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYR 870 (965)
Q Consensus 827 ~~gke~nIRaLLssL~~VLW~~~~W~~v~~~dl~~~~~VKk~Yr 870 (965)
-.||.|.||.-|...++|+ ++++++..+-||...|.-+-+
T Consensus 323 f~gK~C~l~ikL~pdGtl~----~~~~~~Gd~~lCqAalsAvAk 362 (387)
T COG3064 323 FAGKTCRLRIKLAPDGTLL----DIKPEGGDPALCQAALSAVAK 362 (387)
T ss_pred cCCceeEEEEEEcCCccee----eccccCCChHHHHHHHHHHHH
Confidence 3699999999999999988 899999999999987744433
No 5
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=98.82 E-value=3.6e-06 Score=95.99 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=11.3
Q ss_pred ccccccccCCCCCCCCCC
Q 002109 690 NDLESFFSMSSRPSSAPR 707 (965)
Q Consensus 690 ~dlesfFs~~Sr~sSaPr 707 (965)
..|++||++....+.+|+
T Consensus 257 ~~~dd~~~gl~~~~~~~~ 274 (387)
T PRK09510 257 AEVDDLFGGLDSGKNAPK 274 (387)
T ss_pred HHHHHHhhcccccccccc
Confidence 348899987664433433
No 6
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=98.60 E-value=1e-05 Score=91.71 Aligned_cols=17 Identities=35% Similarity=0.372 Sum_probs=9.5
Q ss_pred cccccHHHHhhcccccc
Q 002109 829 GKEGNIRALLATMQYVL 845 (965)
Q Consensus 829 gke~nIRaLLssL~~VL 845 (965)
|..|.|+..|...|.|+
T Consensus 284 g~~v~V~I~L~pdG~V~ 300 (346)
T TIGR02794 284 GKTCRLRIRLAPDGTLL 300 (346)
T ss_pred CCEEEEEEEECCCCCEE
Confidence 44555555555555555
No 7
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=98.42 E-value=0.00012 Score=80.49 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=14.2
Q ss_pred ccccccccccCCCCCCCCCCC
Q 002109 688 NDNDLESFFSMSSRPSSAPRP 708 (965)
Q Consensus 688 ~~~dlesfFs~~Sr~sSaPrs 708 (965)
....|++||+.++....+|+.
T Consensus 257 ~~aaldD~fg~ls~g~~a~~~ 277 (387)
T COG3064 257 AAAALDDIFGGLSSGKNAPKT 277 (387)
T ss_pred HHhhHHHHhccccccCCCCCc
Confidence 334589999988865555553
No 8
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=98.32 E-value=0.00014 Score=82.53 Aligned_cols=26 Identities=50% Similarity=0.503 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002109 646 EALQRAERAAVQRAASEARERAAAEAR 672 (965)
Q Consensus 646 Ear~kaEreakerae~Ear~rae~eA~ 672 (965)
+++.++|. +++++++++.++++.++.
T Consensus 193 eak~kae~-a~~ka~~ea~~ka~~~~~ 218 (346)
T TIGR02794 193 EAKAKAEA-AKAKAAAEAAAKAEAEAA 218 (346)
T ss_pred HHHHHHHH-HHHhhhhhHHHHHHHHHH
Confidence 33334443 444444444444444443
No 9
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.14 E-value=1.7e-05 Score=99.80 Aligned_cols=11 Identities=18% Similarity=0.165 Sum_probs=6.4
Q ss_pred cccchhhhccc
Q 002109 941 FDDKLLLHANM 951 (965)
Q Consensus 941 ~~~~~~~~~~~ 951 (965)
|.++-|||-+-
T Consensus 1005 ~~~~~~~~~~~ 1015 (1021)
T PTZ00266 1005 YALKNFAHKGP 1015 (1021)
T ss_pred HHHHhhhhcCC
Confidence 45666666543
No 10
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.0015 Score=78.72 Aligned_cols=9 Identities=33% Similarity=0.350 Sum_probs=6.1
Q ss_pred ccccccCCC
Q 002109 345 EIPLFTQPT 353 (965)
Q Consensus 345 ~i~l~~~P~ 353 (965)
++--+.+|+
T Consensus 259 ema~sGq~l 267 (1118)
T KOG1029|consen 259 EMAKSGQPL 267 (1118)
T ss_pred HHHhcCCCC
Confidence 666677766
No 11
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0085 Score=72.52 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=15.2
Q ss_pred cchhhhhhc--ceeeeeecccchh
Q 002109 925 DSFLVYYFG--CFTFCCQFDDKLL 946 (965)
Q Consensus 925 ~~~~~~~~~--~~~~~~~~~~~~~ 946 (965)
-|||.=-|. ..-|-|.|..++-
T Consensus 728 PGWlaGel~gktGWFPenyvEki~ 751 (1118)
T KOG1029|consen 728 PGWLAGELRGKTGWFPENYVEKIP 751 (1118)
T ss_pred cccccceeccccCcCcHHHHhhcc
Confidence 788877773 3457888877654
No 12
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=97.61 E-value=5.2e-05 Score=63.74 Aligned_cols=53 Identities=26% Similarity=0.308 Sum_probs=43.8
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR 909 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r 909 (965)
|.-+++..-.+...||++|++.++.+|||+..+. .-.+...|..|++||+.++
T Consensus 4 y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~------~~~~~~~~~~l~~Ay~~L~ 56 (60)
T smart00271 4 YEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD------KEEAEEKFKEINEAYEVLS 56 (60)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------hHHHHHHHHHHHHHHHHHc
Confidence 4445566667889999999999999999998642 4578999999999999875
No 13
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=97.55 E-value=7e-05 Score=61.78 Aligned_cols=51 Identities=25% Similarity=0.282 Sum_probs=42.1
Q ss_pred ccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109 852 QPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR 909 (965)
Q Consensus 852 ~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r 909 (965)
.-+++..-.+...||++|++.+..+|||+..+. -.+...|..|++||+.++
T Consensus 4 ~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~-------~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 4 DILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-------PEAEEKFKEINEAYEVLS 54 (55)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------HHHHHHHHHHHHHHHHhc
Confidence 344555667889999999999999999998641 578999999999998763
No 14
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.3 Score=60.31 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=6.4
Q ss_pred ccccccccccccccC
Q 002109 337 EDVWLTVSEIPLFTQ 351 (965)
Q Consensus 337 ~dvwltvs~i~l~~~ 351 (965)
+-||.+|||=.|.-.
T Consensus 442 SqiY~sIs~~~l~~L 456 (988)
T KOG2072|consen 442 SQIYESISFERLYKL 456 (988)
T ss_pred HHHHHHHhHHHHHHH
Confidence 334444444333333
No 15
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=97.37 E-value=0.00014 Score=62.29 Aligned_cols=53 Identities=23% Similarity=0.221 Sum_probs=42.9
Q ss_pred ccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 002109 852 QPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRF 910 (965)
Q Consensus 852 ~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~ 910 (965)
.-+++..-.+...||++|++.+..+||||+.+.+ -.++.+|..|++||+.+.-
T Consensus 4 ~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~------~~~~~~~~~i~~Ay~~L~~ 56 (64)
T PF00226_consen 4 EILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE------AEAEEKFARINEAYEILSD 56 (64)
T ss_dssp HHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH------HHHHHHHHHHHHHHHHHHS
T ss_pred HHCCCCCCCCHHHHHHHHHhhhhccccccchhhh------hhhhHHHHHHHHHHHHhCC
Confidence 3456666777899999999999999999987532 4678889999999987653
No 16
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=97.15 E-value=0.00037 Score=76.61 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=50.0
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRF 910 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~ 910 (965)
|+-+++..-.+...||++||+.++.+||||+..+|.+.+..-.|+.-|..|++||+..+-
T Consensus 203 y~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 344455556678999999999999999999988787777766799999999999988753
No 17
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=96.83 E-value=0.063 Score=64.58 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=5.8
Q ss_pred HHHHHHHHHhhhh
Q 002109 899 DLLKVQQIYCRFF 911 (965)
Q Consensus 899 ~~Ln~a~~~~r~~ 911 (965)
+++++-.+++||+
T Consensus 673 ~ii~E~qE~~k~~ 685 (811)
T KOG4364|consen 673 DIIDEDQEASKFS 685 (811)
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444443
No 18
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=96.77 E-value=0.049 Score=65.44 Aligned_cols=12 Identities=25% Similarity=0.650 Sum_probs=5.7
Q ss_pred ccccccchhhhhh
Q 002109 920 NLTMQDSFLVYYF 932 (965)
Q Consensus 920 ~~~~~~~~~~~~~ 932 (965)
+|+..--|+ |++
T Consensus 752 ~lqv~~qw~-y~l 763 (811)
T KOG4364|consen 752 RLQVKKQWL-YKL 763 (811)
T ss_pred cccccceee-eee
Confidence 344444453 555
No 19
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=96.62 E-value=0.0022 Score=66.65 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=48.3
Q ss_pred cchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhhh-----ccccccccc
Q 002109 859 LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFIL-----LCLEGFNLT 922 (965)
Q Consensus 859 l~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~~-----~~~~~~~~~ 922 (965)
-+++..++++|++....+|||++.+. +...+.+|...+..||+||..++=.+. |.|+|+.++
T Consensus 19 ~~d~~~L~~~yr~lq~~~HPD~~~~~--~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~~~~ 85 (176)
T PRK03578 19 ALDEAALDAAYRTVQAQVHPDRFAAA--GDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVDVQ 85 (176)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCC--CHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCCCCc
Confidence 36788999999999999999999753 334455777788999999887765554 567787664
No 20
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=96.62 E-value=0.0021 Score=65.55 Aligned_cols=62 Identities=21% Similarity=0.233 Sum_probs=48.7
Q ss_pred chhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhhh-----cccccccccc
Q 002109 860 ITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFIL-----LCLEGFNLTM 923 (965)
Q Consensus 860 ~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~~-----~~~~~~~~~~ 923 (965)
|++..|+++|++....+|||++.+.+ ..++ -+|...|..||+||..++=.+. |.|+|+++.-
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~-~~~~-~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~~~~~ 69 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGS-AQEQ-LAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGIDLAS 69 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCC-hhhh-HHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCCCCc
Confidence 56789999999999999999997542 2344 5688899999999988775543 7788887643
No 21
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=96.59 E-value=0.0026 Score=65.70 Aligned_cols=62 Identities=23% Similarity=0.306 Sum_probs=47.5
Q ss_pred cchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhh-----hhccccccccc
Q 002109 859 LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFF-----ILLCLEGFNLT 922 (965)
Q Consensus 859 l~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~-----~~~~~~~~~~~ 922 (965)
-++...|+++|++....+||||+.. .+...+.+|...|..||+||..++=. -.+.|+|+.+.
T Consensus 14 ~~d~~~L~~~yr~l~~~~HPDk~~~--~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~~~~ 80 (171)
T PRK05014 14 DIDTQLLASRYQELQRQFHPDKFAN--ASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGFDLA 80 (171)
T ss_pred CCCHHHHHHHHHHHHHHhCcCCCCC--CcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCCccc
Confidence 4677899999999999999999974 33445567888999999998877533 33667777654
No 22
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0019 Score=67.61 Aligned_cols=48 Identities=31% Similarity=0.382 Sum_probs=38.8
Q ss_pred cchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002109 859 LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFI 912 (965)
Q Consensus 859 l~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~ 912 (965)
-++-..+|+-||+..+.|||||.+. + .--|++.|++|..||..+---+
T Consensus 64 ev~~edikkryRklSilVHPDKN~D-d-----~~rAqkAFdivkKA~k~l~n~~ 111 (250)
T KOG1150|consen 64 EVTDEDIKKRYRKLSILVHPDKNPD-D-----AERAQKAFDIVKKAYKLLENDK 111 (250)
T ss_pred CCCHHHHHHHHHhhheeecCCCCcc-c-----HHHHHHHHHHHHHHHHHHhCHH
Confidence 3455899999999999999999874 2 3368999999999998754433
No 23
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=4.2 Score=50.93 Aligned_cols=6 Identities=17% Similarity=0.279 Sum_probs=2.5
Q ss_pred ccCCCC
Q 002109 349 FTQPTS 354 (965)
Q Consensus 349 ~~~P~s 354 (965)
+..|..
T Consensus 417 s~~~~~ 422 (988)
T KOG2072|consen 417 SESPDK 422 (988)
T ss_pred HcCCCc
Confidence 334444
No 24
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=96.39 E-value=0.0036 Score=64.45 Aligned_cols=60 Identities=25% Similarity=0.238 Sum_probs=42.7
Q ss_pred chhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhh-----hcccccccccc
Q 002109 860 ITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFI-----LLCLEGFNLTM 923 (965)
Q Consensus 860 ~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~-----~~~~~~~~~~~ 923 (965)
++...|+++|+++.+.+||||... ...+..+-..|..||+||..++=.+ .|.|+|+++.-
T Consensus 16 id~~~L~~aYr~lq~~~HPDk~~~----~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g~~~~~ 80 (166)
T PRK01356 16 IDLKILEKQYFAMQVKYHPDKAKT----LQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQNINLND 80 (166)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccCCCCCC
Confidence 677899999999999999999852 2334445456777777776655332 36778887643
No 25
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0024 Score=73.93 Aligned_cols=54 Identities=28% Similarity=0.364 Sum_probs=45.4
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC 908 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~ 908 (965)
|.-+++..--+..++|++|||.|...||||+. ++++|-.|+.+|..|..|++++
T Consensus 12 Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~----dpd~K~~AE~~F~~i~~AyEVL 65 (546)
T KOG0718|consen 12 YALLNLPKDATDEEIKKAYRRLSRLFHPDKHT----DPDQKKAAEEKFQRIQRAYEVL 65 (546)
T ss_pred HHHhCCCcccCHHHHHHHHHHHHHhcCCcccC----ChhHHHHHHHHHHHHHHHHHHh
Confidence 33455555567799999999999999999997 4689999999999999998764
No 26
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=96.31 E-value=0.0043 Score=64.33 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=47.6
Q ss_pred cchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhhh-----cccccccc
Q 002109 859 LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFIL-----LCLEGFNL 921 (965)
Q Consensus 859 l~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~~-----~~~~~~~~ 921 (965)
-|+...|+++|++....+|||++... +...+.+|...|..||+||..++=.+. |.|+|+.+
T Consensus 17 ~id~~~L~~~Yr~Lq~~~HPDk~~~~--~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g~~~ 82 (173)
T PRK00294 17 RLDLDQLATRYRELAREVHPDRFADA--PEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGHEV 82 (173)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCC--cHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCCC
Confidence 46789999999999999999999753 333455777889999999988765554 56677654
No 27
>PHA03102 Small T antigen; Reviewed
Probab=96.05 E-value=0.0068 Score=61.79 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=31.1
Q ss_pred hhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 002109 861 TAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRF 910 (965)
Q Consensus 861 ~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~ 910 (965)
+...||++|++.++.+||||. .+.+.-...+..|.+|.+...+.+|
T Consensus 20 s~~eIKkAYr~la~~~HPDkg----g~~e~~k~in~Ay~~L~d~~~r~~y 65 (153)
T PHA03102 20 NLPLMRKAYLRKCLEFHPDKG----GDEEKMKELNTLYKKFRESVKSLRD 65 (153)
T ss_pred CHHHHHHHHHHHHHHHCcCCC----chhHHHHHHHHHHHHHhhHHHhccc
Confidence 668899999999999999993 2333222245555556555555555
No 28
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.0078 Score=67.67 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=48.7
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHH-HHHHHHHHHHHHHHhhhhhh--ccccccc--cccc-
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI-AEKVFDLLKVQQIYCRFFIL--LCLEGFN--LTMQ- 924 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i-A~~vF~~Ln~a~~~~r~~~~--~~~~~~~--~~~~- 924 (965)
|+-+++.-.-+...||++|||..|.+||||.+. +.....++. ....|.+|++--+|-.|--. -+|.-+| ++|+
T Consensus 19 YelLgV~k~Asd~eIKkAYRKLALk~HPDkNpd-dp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~~~~g~ 97 (336)
T KOG0713|consen 19 YELLGVPKNASDQEIKKAYRKLALKYHPDKNPD-DPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKDGEGGG 97 (336)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccccccccCC
Confidence 555566666677999999999999999999985 221111111 33444444444445555444 4455444 6663
Q ss_pred ---cchhhhh
Q 002109 925 ---DSFLVYY 931 (965)
Q Consensus 925 ---~~~~~~~ 931 (965)
+.|.+|.
T Consensus 98 ~~~~~f~~~f 107 (336)
T KOG0713|consen 98 GGNDIFSAFF 107 (336)
T ss_pred cccchHHHhh
Confidence 5676553
No 29
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.74 E-value=0.21 Score=61.06 Aligned_cols=11 Identities=36% Similarity=0.613 Sum_probs=7.4
Q ss_pred cccccCccccc
Q 002109 873 TLCIHPDKVQQ 883 (965)
Q Consensus 873 ~l~vHPDK~~~ 883 (965)
-+-+||||-++
T Consensus 1184 Qm~l~~~kpP~ 1194 (1259)
T KOG0163|consen 1184 QMELHPDKPPI 1194 (1259)
T ss_pred hheecCCCCCe
Confidence 45678887665
No 30
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=95.70 E-value=0.0065 Score=67.99 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=37.8
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR 909 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r 909 (965)
|.-+++....+...||++|++..+.+|||+... . .|+..|..||+||..+.
T Consensus 7 y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~--~------~~~~~f~~i~~Ay~~L~ 57 (306)
T PRK10266 7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE--P------DAEARFKEVAEAWEVLS 57 (306)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--c------cHHHHHHHHHHHHHHhh
Confidence 455566667788999999999999999999542 1 35666667777766654
No 31
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=95.70 E-value=0.095 Score=62.00 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=8.9
Q ss_pred CCCCCccccccCCCCCC
Q 002109 57 RESSPLDDLLGNLGKKE 73 (965)
Q Consensus 57 ~~~~~~dDllgg~g~~~ 73 (965)
+++..+|||+..|--..
T Consensus 148 ~edgd~D~l~~sl~Ds~ 164 (940)
T KOG4661|consen 148 VEDGDVDDLCVSLDDSD 164 (940)
T ss_pred cccccccchhhhhcchH
Confidence 34445556655555444
No 32
>PRK14299 chaperone protein DnaJ; Provisional
Probab=95.61 E-value=0.0074 Score=67.12 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=38.5
Q ss_pred ccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002109 852 QPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFI 912 (965)
Q Consensus 852 ~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~ 912 (965)
.-+++..-.+...||++|||+.+.+|||+... . -|+..|..||+||+.+.-..
T Consensus 8 ~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~------~~~~~f~~i~~Ay~~L~d~~ 60 (291)
T PRK14299 8 AILGVPKNASQDEIKKAFKKLARKYHPDVNKS--P------GAEEKFKEINEAYTVLSDPE 60 (291)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--h------hHHHHHHHHHHHHHHhcCHH
Confidence 44455556678999999999999999999752 1 14556777888877765433
No 33
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.50 E-value=0.24 Score=60.57 Aligned_cols=15 Identities=13% Similarity=-0.042 Sum_probs=8.0
Q ss_pred ccccccCCCCCCCCC
Q 002109 278 DSLRSAGRATSPPSY 292 (965)
Q Consensus 278 n~~~~~~~~~~~~~~ 292 (965)
|-.|-+-|.++..+.
T Consensus 554 ~HfRL~~PRkSklks 568 (1259)
T KOG0163|consen 554 NHFRLDLPRKSKLKS 568 (1259)
T ss_pred cceeecCCchhhhhh
Confidence 445555555555554
No 34
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=95.48 E-value=2.4 Score=47.08 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=11.4
Q ss_pred ccccccCCCCCCCCC
Q 002109 345 EIPLFTQPTSAPPPS 359 (965)
Q Consensus 345 ~i~l~~~P~saPPpS 359 (965)
+|.++.||..-|..+
T Consensus 187 ~ir~vdipicdplr~ 201 (445)
T KOG2891|consen 187 EIRNVDIPICDPLRE 201 (445)
T ss_pred cceecCCcccchhHH
Confidence 888888888776554
No 35
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.012 Score=67.56 Aligned_cols=61 Identities=16% Similarity=0.331 Sum_probs=48.4
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHH-HHHHHHHHHHHHHHhhhhh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI-AEKVFDLLKVQQIYCRFFI 912 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i-A~~vF~~Ln~a~~~~r~~~ 912 (965)
|.-+++.---+...|||+|||+.+.+|||+... ....|.|+. ++..|.+|.+..++--|-.
T Consensus 7 YeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g-~~~AeeKFKEI~eAYEVLsD~eKRa~YD~ 68 (371)
T COG0484 7 YEILGVSKDASEEEIKKAYRKLAKKYHPDRNPG-DKEAEEKFKEINEAYEVLSDPEKRAAYDQ 68 (371)
T ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHHHHhCCHHHHHHhhc
Confidence 445566666788999999999999999999983 234677777 7888888888888877763
No 36
>PRK14281 chaperone protein DnaJ; Provisional
Probab=95.30 E-value=0.012 Score=68.11 Aligned_cols=54 Identities=24% Similarity=0.276 Sum_probs=38.7
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFF 911 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~ 911 (965)
|.-+++..-.+...||++|+|+.+.+||||.... . -|+..|..||+||+++.=.
T Consensus 6 y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-~------~a~~~f~~i~~Ay~vL~d~ 59 (397)
T PRK14281 6 YEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN-K------EAEEHFKEVNEAYEVLSND 59 (397)
T ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-h------HHHHHHHHHHHHHHHhhhh
Confidence 3444555556778999999999999999997531 1 2456777777777776543
No 37
>PRK10767 chaperone protein DnaJ; Provisional
Probab=95.23 E-value=0.013 Score=67.26 Aligned_cols=52 Identities=23% Similarity=0.340 Sum_probs=37.6
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR 909 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r 909 (965)
|.-+++..-.+...||++|+|+.+.+||||.... . .|+..|..||+||+.+.
T Consensus 7 y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~-~------~a~~~f~~i~~Ay~~L~ 58 (371)
T PRK10767 7 YEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-K------EAEEKFKEIKEAYEVLS 58 (371)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-H------HHHHHHHHHHHHHHHhc
Confidence 4455666667789999999999999999997521 1 25566777777766653
No 38
>PRK14295 chaperone protein DnaJ; Provisional
Probab=95.20 E-value=0.014 Score=67.65 Aligned_cols=51 Identities=27% Similarity=0.311 Sum_probs=38.6
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC 908 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~ 908 (965)
|.-+++..-.+...||++|||+.+.+||||.... . .|+..|..||+||..+
T Consensus 12 y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~------~a~~~f~~i~~Ay~vL 62 (389)
T PRK14295 12 YKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD-A------KAEERFKEISEAYDVL 62 (389)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-h------hHHHHHHHHHHHHHHH
Confidence 5556666677889999999999999999997531 1 2566777777777765
No 39
>PRK14280 chaperone protein DnaJ; Provisional
Probab=95.04 E-value=0.016 Score=66.81 Aligned_cols=50 Identities=20% Similarity=0.328 Sum_probs=34.7
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC 908 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~ 908 (965)
|.-+++..-.+...||++|+|+.+.+|||+... .. |+..|..||+||..+
T Consensus 7 y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~------a~~~f~~i~~Ay~vL 56 (376)
T PRK14280 7 YEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE--EG------ADEKFKEISEAYEVL 56 (376)
T ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cc------HHHHHHHHHHHHHHh
Confidence 445566666788899999999999999999753 22 333455555555443
No 40
>PRK14284 chaperone protein DnaJ; Provisional
Probab=94.92 E-value=0.018 Score=66.65 Aligned_cols=54 Identities=26% Similarity=0.289 Sum_probs=39.4
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFF 911 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~ 911 (965)
|.-+++..-.++..||++|||..+.+|||+.... . -|+..|..|++||+++...
T Consensus 4 y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-~------~a~~~f~~i~~Ay~vL~d~ 57 (391)
T PRK14284 4 YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD-A------EAEKRFKEVSEAYEVLSDA 57 (391)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-h------HHHHHHHHHHHHHHHhcCH
Confidence 3445555567889999999999999999997631 1 2555677777777776543
No 41
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=94.88 E-value=0.021 Score=55.84 Aligned_cols=47 Identities=11% Similarity=0.216 Sum_probs=35.9
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC 908 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~ 908 (965)
|+.+++..-.+...|+++|++.++.+|||+- | +. .+|..||+||+++
T Consensus 68 y~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---G-s~-------~~~~kIneAyevL 114 (116)
T PTZ00100 68 YKILNISPTASKERIREAHKQLMLRNHPDNG---G-ST-------YIASKVNEAKDLL 114 (116)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---C-CH-------HHHHHHHHHHHHH
Confidence 4455666666789999999999999999982 3 32 2567899998875
No 42
>PRK14276 chaperone protein DnaJ; Provisional
Probab=94.88 E-value=0.018 Score=66.31 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=34.7
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC 908 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~ 908 (965)
|.-+++..-.+...||++|+|+.+.+|||+... ... +..|..||+||+++
T Consensus 7 y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~a------~~~f~~i~~Ay~vL 56 (380)
T PRK14276 7 YDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE--PGA------EEKYKEVQEAYETL 56 (380)
T ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cCH------HHHHHHHHHHHHHh
Confidence 444566666788999999999999999999763 222 33455555555543
No 43
>PRK14277 chaperone protein DnaJ; Provisional
Probab=94.87 E-value=0.018 Score=66.44 Aligned_cols=52 Identities=21% Similarity=0.258 Sum_probs=37.3
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR 909 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r 909 (965)
|.-+++..-.+...||++|||+.+.+||||.... . -|+..|..||+||+.+.
T Consensus 8 y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~------~a~~~f~~i~~Ay~vL~ 59 (386)
T PRK14277 8 YEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD-K------EAEQKFKEINEAYEILS 59 (386)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-h------HHHHHHHHHHHHHHHhC
Confidence 4556666677889999999999999999997531 1 24455666666665543
No 44
>PRK14278 chaperone protein DnaJ; Provisional
Probab=94.86 E-value=0.021 Score=65.77 Aligned_cols=50 Identities=22% Similarity=0.320 Sum_probs=37.5
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC 908 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~ 908 (965)
|.-+++..-.+...||++|||..+.+|||+... . -|+..|..|++||+.+
T Consensus 6 y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~--~------~a~~~f~~i~~Ay~vL 55 (378)
T PRK14278 6 YGLLGVSRNASDAEIKRAYRKLARELHPDVNPD--E------EAQEKFKEISVAYEVL 55 (378)
T ss_pred ceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc--H------HHHHHHHHHHHHHHHh
Confidence 455566666778999999999999999999752 1 2456677777777665
No 45
>PRK14293 chaperone protein DnaJ; Provisional
Probab=94.85 E-value=0.022 Score=65.59 Aligned_cols=60 Identities=13% Similarity=0.343 Sum_probs=38.5
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHH-HHHHHHHHHHHHHHHhhhhh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKY-IAEKVFDLLKVQQIYCRFFI 912 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~-iA~~vF~~Ln~a~~~~r~~~ 912 (965)
|.-+++..-.+...||++|++..+.+|||+... ...++++ ..+..|.+|.+...+..|-.
T Consensus 6 y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~vL~~~~~R~~yd~ 66 (374)
T PRK14293 6 YEILGVSRDADKDELKRAYRRLARKYHPDVNKE--PGAEDRFKEINRAYEVLSDPETRARYDQ 66 (374)
T ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--cCHHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 455566667788999999999999999999763 2222322 24444444444444444443
No 46
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.023 Score=62.28 Aligned_cols=56 Identities=23% Similarity=0.285 Sum_probs=41.6
Q ss_pred cccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 002109 855 SLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRF 910 (965)
Q Consensus 855 ~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~ 910 (965)
++....+...|||+||+..+++||||.......++.=++.+.++.+|.++..+.=|
T Consensus 38 gl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~Y 93 (279)
T KOG0716|consen 38 GLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVY 93 (279)
T ss_pred CCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhH
Confidence 33345677889999999999999999875322456656678888888877766655
No 47
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=94.76 E-value=0.22 Score=61.20 Aligned_cols=6 Identities=33% Similarity=0.639 Sum_probs=3.4
Q ss_pred cccHHH
Q 002109 831 EGNIRA 836 (965)
Q Consensus 831 e~nIRa 836 (965)
..|||.
T Consensus 470 ~~~lRS 475 (1064)
T KOG1144|consen 470 TENLRS 475 (1064)
T ss_pred chhcCC
Confidence 346665
No 48
>PRK14285 chaperone protein DnaJ; Provisional
Probab=94.73 E-value=0.017 Score=66.38 Aligned_cols=51 Identities=25% Similarity=0.371 Sum_probs=34.8
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC 908 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~ 908 (965)
|.-+++....+...||++|||+.+.+||||.... .. |+..|..|++||+++
T Consensus 6 y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~------a~~~f~~i~~Ay~vL 56 (365)
T PRK14285 6 YEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN-KE------AESIFKEATEAYEVL 56 (365)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-HH------HHHHHHHHHHHHHHH
Confidence 4445666677889999999999999999997531 11 344555555555443
No 49
>PRK14300 chaperone protein DnaJ; Provisional
Probab=94.72 E-value=0.021 Score=65.66 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=36.1
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR 909 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r 909 (965)
|+-+++..-.+...||++|+|+.+.+|||+... .. |+..|..||+||+.+.
T Consensus 6 y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~--~~------~~~~f~~i~~Ay~~L~ 56 (372)
T PRK14300 6 YQILGVSKTASQADLKKAYLKLAKQYHPDTTDA--KD------AEKKFKEINAAYDVLK 56 (372)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cC------HHHHHHHHHHHHHHhh
Confidence 556667777888999999999999999999752 22 3334555555555443
No 50
>PRK14283 chaperone protein DnaJ; Provisional
Probab=94.71 E-value=0.02 Score=65.97 Aligned_cols=59 Identities=19% Similarity=0.343 Sum_probs=39.9
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHH-HHHHHHHHHHHHHHhhhh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI-AEKVFDLLKVQQIYCRFF 911 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i-A~~vF~~Ln~a~~~~r~~ 911 (965)
|.-+++..-.+...||++|+|+.+.+||||... ...+.++- ....|.+|.+...+..|-
T Consensus 8 y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~~Lsd~~kR~~YD 67 (378)
T PRK14283 8 YEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE--EGAEEKFKEISEAYAVLSDDEKRQRYD 67 (378)
T ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhchhHHHHHHh
Confidence 555667777788999999999999999999753 22333333 455555555555555553
No 51
>PRK14297 chaperone protein DnaJ; Provisional
Probab=94.69 E-value=0.021 Score=65.76 Aligned_cols=56 Identities=21% Similarity=0.231 Sum_probs=40.3
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFIL 913 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~~ 913 (965)
|.-+++..-.+...||++|+|+.+.+||||.... . -|+..|..||+||+.+.=...
T Consensus 7 y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~------~a~~~f~~i~~Ay~vL~d~~~ 62 (380)
T PRK14297 7 YEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN-K------EAEEKFKEINEAYQVLSDPQK 62 (380)
T ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-H------HHHHHHHHHHHHHHHhcCHhh
Confidence 3444555556778999999999999999997531 1 256678888888777655443
No 52
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.035 Score=62.09 Aligned_cols=49 Identities=33% Similarity=0.384 Sum_probs=36.7
Q ss_pred cCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109 853 PVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC 908 (965)
Q Consensus 853 ~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~ 908 (965)
-+++....+...|||+|++-.|.|||||++. +++ |..=|..|.+|+..+
T Consensus 10 lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~---dP~----A~ekFq~L~eAy~VL 58 (296)
T KOG0691|consen 10 LLGISEDATDAEIKKAYRKKALQYHPDKNPG---DPQ----AAEKFQELSEAYEVL 58 (296)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHhcCCCCCCC---ChH----HHHHHHHHHHHHHHh
Confidence 3566677788999999999999999999984 222 566666666665543
No 53
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=94.51 E-value=0.025 Score=64.42 Aligned_cols=57 Identities=18% Similarity=0.361 Sum_probs=34.9
Q ss_pred cCcccccchhhhHhHHhhhccccccCccccccCCCHHHHH-HHHHHHHHHHHHHHHhhhh
Q 002109 853 PVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKY-IAEKVFDLLKVQQIYCRFF 911 (965)
Q Consensus 853 ~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~-iA~~vF~~Ln~a~~~~r~~ 911 (965)
-+++..-.+...||++|+++.+.+||||... ...++++ .....|.+|.+.-.+..|-
T Consensus 5 ~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~~yd 62 (354)
T TIGR02349 5 ILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRAQYD 62 (354)
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhhChHHHHhhh
Confidence 3445555677899999999999999999862 2222322 1334444444444444443
No 54
>PRK14288 chaperone protein DnaJ; Provisional
Probab=94.47 E-value=0.026 Score=64.87 Aligned_cols=51 Identities=25% Similarity=0.381 Sum_probs=35.4
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC 908 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~ 908 (965)
|.-+++..-.+...||++|||..+.+||||.... .. |+.-|..||+||+++
T Consensus 6 Y~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~-~~------a~~~f~~i~~AYevL 56 (369)
T PRK14288 6 YEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD-KE------AEEKFKLINEAYGVL 56 (369)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-cH------HHHHHHHHHHHHHHh
Confidence 4555666667889999999999999999997531 11 344455555555443
No 55
>PRK14290 chaperone protein DnaJ; Provisional
Probab=94.47 E-value=0.03 Score=64.22 Aligned_cols=57 Identities=19% Similarity=0.144 Sum_probs=43.3
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFIL 913 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~~ 913 (965)
|.-+++..-.+...||++||++.+.+|||+... + .-.|+..|..||+||..+.-...
T Consensus 6 y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~---~---~~~a~~~f~~i~~Ay~~L~d~~~ 62 (365)
T PRK14290 6 YKILGVDRNASQEDIKKAFRELAKKWHPDLHPG---N---KAEAEEKFKEISEAYEVLSDPQK 62 (365)
T ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---c---hhHHHHHHHHHHHHHHHhcChhh
Confidence 455566666788999999999999999999642 1 11367788888888887766554
No 56
>PRK14296 chaperone protein DnaJ; Provisional
Probab=94.43 E-value=0.029 Score=64.57 Aligned_cols=60 Identities=15% Similarity=0.294 Sum_probs=42.3
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHH-HHHHHHHHHHHHHHhhhhh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI-AEKVFDLLKVQQIYCRFFI 912 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i-A~~vF~~Ln~a~~~~r~~~ 912 (965)
|.-+++..-.+...||++|||+.+.+||||... ...+.+|- ....|.+|.+.-++..|--
T Consensus 7 Y~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~--~~a~~~F~~i~~AyevLsD~~KR~~YD~ 67 (372)
T PRK14296 7 YEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS--PDAHDKMVEINEAADVLLDKDKRKQYDQ 67 (372)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--chHHHHHHHHHHHHHHhcCHHHhhhhhh
Confidence 445566666778999999999999999999753 23344443 5666666766666666664
No 57
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=94.39 E-value=0.028 Score=65.80 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=40.0
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHH-HHHHHHHHHHHHHHHhhhhh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKY-IAEKVFDLLKVQQIYCRFFI 912 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~-iA~~vF~~Ln~a~~~~r~~~ 912 (965)
|.-+++..-.+...||++|||..+.+||||.. + +.+| .....|.+|.+.+++..|-.
T Consensus 31 Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~----~-~e~F~~i~~AYevLsD~~kR~~YD~ 88 (421)
T PTZ00037 31 YEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG----D-PEKFKEISRAYEVLSDPEKRKIYDE 88 (421)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc----h-HHHHHHHHHHHHHhccHHHHHHHhh
Confidence 34455555567899999999999999999963 2 2333 25666777776666666765
No 58
>PRK14279 chaperone protein DnaJ; Provisional
Probab=94.28 E-value=0.026 Score=65.39 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=26.4
Q ss_pred CccCcccccchhhhHhHHhhhccccccCcccc
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQ 882 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~ 882 (965)
|.-+++..-.+...||++|||+.+.+||||..
T Consensus 12 y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~ 43 (392)
T PRK14279 12 YKELGVSSDASAEEIKKAYRKLARELHPDANP 43 (392)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC
Confidence 34556666667799999999999999999975
No 59
>PRK14301 chaperone protein DnaJ; Provisional
Probab=94.21 E-value=0.029 Score=64.59 Aligned_cols=60 Identities=23% Similarity=0.462 Sum_probs=37.1
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHH-HHHHHHHHHHHHHHhhhh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI-AEKVFDLLKVQQIYCRFF 911 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i-A~~vF~~Ln~a~~~~r~~ 911 (965)
|.-+++..-.+...||++|||+.+.+||||.... ...++++- ....|.+|++.-.+-.|-
T Consensus 7 y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD 67 (373)
T PRK14301 7 YEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN-PEAEQKFKEAAEAYEVLRDAEKRARYD 67 (373)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC-hHHHHHHHHHHHHHHHhcchhhhhhhh
Confidence 3444555556778999999999999999998632 12233322 344455555544444444
No 60
>PRK14282 chaperone protein DnaJ; Provisional
Probab=94.21 E-value=0.033 Score=63.98 Aligned_cols=62 Identities=16% Similarity=0.326 Sum_probs=39.0
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHH-HHHHHHHHHHHHHHhhhhh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI-AEKVFDLLKVQQIYCRFFI 912 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i-A~~vF~~Ln~a~~~~r~~~ 912 (965)
|+-+++.--.+...||++|+|+.+.+|||+........+++|- ....|.+|.+.-.+..|-.
T Consensus 7 y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 69 (369)
T PRK14282 7 YEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDR 69 (369)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhh
Confidence 4455666667889999999999999999997531111233332 3444555555545555543
No 61
>PRK14291 chaperone protein DnaJ; Provisional
Probab=94.16 E-value=0.039 Score=63.77 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=41.5
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHH-HHHHHHHHHHHHHHHhhhhh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKY-IAEKVFDLLKVQQIYCRFFI 912 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~-iA~~vF~~Ln~a~~~~r~~~ 912 (965)
|.-+++..-.+...||++||++.+.+||||... ...+++| .....|.+|++...+.-|-.
T Consensus 6 Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vLsd~~kR~~YD~ 66 (382)
T PRK14291 6 YEILGVSRNATQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEINEAYQVLSDPEKRKLYDQ 66 (382)
T ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 344556666678999999999999999999763 2334443 25566666666666666654
No 62
>PRK14292 chaperone protein DnaJ; Provisional
Probab=94.14 E-value=0.033 Score=64.00 Aligned_cols=58 Identities=21% Similarity=0.400 Sum_probs=35.5
Q ss_pred ccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHH-HHHHHHHHHHHHHHHhhhh
Q 002109 852 QPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKY-IAEKVFDLLKVQQIYCRFF 911 (965)
Q Consensus 852 ~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~-iA~~vF~~Ln~a~~~~r~~ 911 (965)
.-+++..-.+...||++|+|+.+.+|||+.... ..++++ .....|.+|.+...+..|-
T Consensus 6 ~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~--~a~~~~~~i~~Ay~vL~d~~~r~~yd 64 (371)
T PRK14292 6 ELLGVSRTASADEIKSAYRKLALKYHPDRNKEK--GAAEKFAQINEAYAVLSDAEKRAHYD 64 (371)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCh--hHHHHHHHHHHHHHHhcchhhhhhHh
Confidence 334555556788999999999999999997632 222222 1344444444444444444
No 63
>PRK14286 chaperone protein DnaJ; Provisional
Probab=94.05 E-value=0.035 Score=63.93 Aligned_cols=59 Identities=19% Similarity=0.366 Sum_probs=35.2
Q ss_pred ccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHH-HHHHHHHHHHHHHHhhhh
Q 002109 852 QPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI-AEKVFDLLKVQQIYCRFF 911 (965)
Q Consensus 852 ~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i-A~~vF~~Ln~a~~~~r~~ 911 (965)
.-+++.--.+...||++||++.+.+||||.... ...+++|- ....|.+|++...+..|-
T Consensus 8 ~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD 67 (372)
T PRK14286 8 DILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN-KESEEKFKEATEAYEILRDPKKRQAYD 67 (372)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 334455556678899999999999999997531 11222221 344444444444444444
No 64
>PRK14294 chaperone protein DnaJ; Provisional
Probab=94.01 E-value=0.037 Score=63.57 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=36.6
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR 909 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r 909 (965)
|.-+++..-.+...||++|||+.+.+||||.... . -|+..|..|++||+.+.
T Consensus 7 y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~------~~~~~f~~~~~Ay~vL~ 58 (366)
T PRK14294 7 YEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD-K------EAEELFKEAAEAYEVLS 58 (366)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-h------HHHHHHHHHHHHHHHhc
Confidence 3445555567789999999999999999997631 1 24555666666666554
No 65
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=93.96 E-value=0.036 Score=69.63 Aligned_cols=74 Identities=9% Similarity=0.062 Sum_probs=46.9
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhhhc------cccccc-ccc
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFILL------CLEGFN-LTM 923 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~~~------~~~~~~-~~~ 923 (965)
|.-+++..-.+...||++|+|+.+.+||||.+. .. |..-|..|++||.++.-...| ...|.. ..|
T Consensus 576 YdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~--~~------A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~~~~ 647 (1136)
T PTZ00341 576 YDILGVGVNADMKEISERYFKLAENYYPPKRSG--NE------GFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKGVNF 647 (1136)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ch------HHHHHHHHHHHHHHhCCHHHHHHHhhccccccCCCCc
Confidence 455666666788999999999999999999763 11 444566666666555433332 222322 133
Q ss_pred ccchhhhhh
Q 002109 924 QDSFLVYYF 932 (965)
Q Consensus 924 ~~~~~~~~~ 932 (965)
-+.|+-||+
T Consensus 648 iDP~~Ffml 656 (1136)
T PTZ00341 648 IHPSIFYLL 656 (1136)
T ss_pred cCHHHHHHH
Confidence 477776653
No 66
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.052 Score=63.23 Aligned_cols=55 Identities=29% Similarity=0.343 Sum_probs=45.5
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFIL 913 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~~ 913 (965)
|--+++.--+....+||.|||.-..|||||..+- .|+.+|-.|.-||+..-|+-.
T Consensus 238 YsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~--------~A~Eafk~Lq~Afevig~~~k 292 (490)
T KOG0720|consen 238 YSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIP--------RAEEAFKKLQVAFEVIGDSVK 292 (490)
T ss_pred hhhcCCCCCCCHHHHHHHHHhhceEeCCCccCCh--------hHHHHHHHHHHHHHHhcchhh
Confidence 5556666666778999999999999999998742 578899999999998888766
No 67
>PRK14298 chaperone protein DnaJ; Provisional
Probab=93.85 E-value=0.034 Score=64.11 Aligned_cols=50 Identities=26% Similarity=0.422 Sum_probs=34.2
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC 908 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~ 908 (965)
|.-+++..-.+...||++|+|+.+.+|||+... .. |+.-|..||+||+++
T Consensus 8 y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~------~~~~f~~i~~Ay~vL 57 (377)
T PRK14298 8 YEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE--PD------AEEKFKEISEAYAVL 57 (377)
T ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC--hh------HHHHHHHHHHHHHHh
Confidence 344556666677899999999999999999752 22 233455555555543
No 68
>PRK14287 chaperone protein DnaJ; Provisional
Probab=93.56 E-value=0.051 Score=62.61 Aligned_cols=60 Identities=22% Similarity=0.341 Sum_probs=36.7
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHH-HHHHHHHHHHHHHHhhhhh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI-AEKVFDLLKVQQIYCRFFI 912 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i-A~~vF~~Ln~a~~~~r~~~ 912 (965)
|.-+++..-.+...||++|||+.+.+|||+... ...++++. ....|.+|.+.-++..|--
T Consensus 7 y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~~~~~f~~i~~Ay~~L~d~~kR~~YD~ 67 (371)
T PRK14287 7 YEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA--PDAEDKFKEVKEAYDTLSDPQKKAHYDQ 67 (371)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCcHhHHHHHHh
Confidence 344555566677889999999999999999752 22233322 3444444444444444543
No 69
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=93.35 E-value=0.11 Score=54.16 Aligned_cols=60 Identities=18% Similarity=0.203 Sum_probs=46.1
Q ss_pred cchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhhh-----cccc-ccc
Q 002109 859 LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFIL-----LCLE-GFN 920 (965)
Q Consensus 859 l~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~~-----~~~~-~~~ 920 (965)
-|++..+++.|+.....+|||++.+. +...+-+|...=..||+||..++=.+. |.|. |+.
T Consensus 15 ~iD~~~L~~~y~~Lq~~~HPD~f~~~--~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~~g~~ 80 (173)
T PRK01773 15 QLDNALLSERYLALQKSLHPDNFANS--SAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTGEQ 80 (173)
T ss_pred CCCHHHHHHHHHHHHHHhCcCcccCC--CHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhccCCC
Confidence 37789999999999999999999864 445555776677888888877766554 6666 654
No 70
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=93.25 E-value=17 Score=40.79 Aligned_cols=8 Identities=25% Similarity=-0.068 Sum_probs=3.1
Q ss_pred CcchhhHH
Q 002109 437 EDVESSIA 444 (965)
Q Consensus 437 ~~~~~~~~ 444 (965)
+|.+..+.
T Consensus 29 FDP~aLER 36 (276)
T PF12037_consen 29 FDPEALER 36 (276)
T ss_pred CCcHHHHH
Confidence 33333433
No 71
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=93.18 E-value=1.6 Score=52.28 Aligned_cols=9 Identities=56% Similarity=0.922 Sum_probs=3.9
Q ss_pred CCcCCCCcc
Q 002109 124 SSVMEDPFG 132 (965)
Q Consensus 124 ss~~dDpF~ 132 (965)
++-.+-||.
T Consensus 234 ssElEQpfa 242 (940)
T KOG4661|consen 234 SSELEQPFA 242 (940)
T ss_pred hhhhhhhhh
Confidence 334444444
No 72
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=0.078 Score=57.24 Aligned_cols=53 Identities=25% Similarity=0.349 Sum_probs=38.5
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC 908 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~ 908 (965)
|.-+++---.++..|+++|+|.-|.+||||++ .|++--|.-=|..|+.++.++
T Consensus 17 YevLGVer~a~~~eIrkAY~klal~~HPDk~~-----eed~~ea~~kFq~l~k~y~iL 69 (264)
T KOG0719|consen 17 YEVLGVERDATDKEIRKAYHKLALRLHPDKNH-----EEDKVEATEKFQQLQKAYQIL 69 (264)
T ss_pred HHHhhhcccCCHHHHHHHHHHHHHHhCCCcch-----hhhHHHHHHHHHHHHHHHHHh
Confidence 34444444557799999999999999999985 245555777777777775544
No 73
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.98 E-value=24 Score=41.82 Aligned_cols=8 Identities=25% Similarity=0.385 Sum_probs=3.2
Q ss_pred chhhhhhc
Q 002109 926 SFLVYYFG 933 (965)
Q Consensus 926 ~~~~~~~~ 933 (965)
||-+-|+|
T Consensus 587 ~vQAavYg 594 (630)
T KOG0742|consen 587 SVQAAVYG 594 (630)
T ss_pred HHHHHHhc
Confidence 44443333
No 74
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.89 E-value=0.094 Score=59.61 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=38.7
Q ss_pred ccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHH-HHHHHHHHHHHHHHhhh
Q 002109 852 QPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI-AEKVFDLLKVQQIYCRF 910 (965)
Q Consensus 852 ~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i-A~~vF~~Ln~a~~~~r~ 910 (965)
.-+.+.-.-+...|||+|||+-+.+||||... ..+|++ ....|.+|.+.=++--|
T Consensus 8 ~il~v~~~As~~eikkayrkla~k~HpDkn~~----~~ekfkei~~AyevLsd~ekr~~y 63 (337)
T KOG0712|consen 8 DILGVSPDASEEEIKKAYRKLALKYHPDKNPD----AGEKFKEISQAYEVLSDPEKREIY 63 (337)
T ss_pred eeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34455567788999999999999999999874 344554 45566666665444433
No 75
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=0.077 Score=53.89 Aligned_cols=48 Identities=25% Similarity=0.328 Sum_probs=32.8
Q ss_pred cccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109 855 SLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC 908 (965)
Q Consensus 855 ~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~ 908 (965)
++.--.+...||++|+|..+.+|||+.... .. .|+.-|..+|+||.++
T Consensus 13 gv~~~as~~eik~ayrkla~~~HPD~~~~~--~~----~a~~~f~~i~~Ay~vL 60 (237)
T COG2214 13 GVPPNASLEEIKKAYRKLALKYHPDRNPGD--PK----VAEEKFKEINEAYEIL 60 (237)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hh----HHHHHHHHHHHHHHHh
Confidence 334444568899999999999999998742 11 4555555555555443
No 76
>PRK14289 chaperone protein DnaJ; Provisional
Probab=92.73 E-value=0.076 Score=61.41 Aligned_cols=55 Identities=24% Similarity=0.228 Sum_probs=38.0
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFI 912 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~ 912 (965)
|.-+++..-.+...||++|+|+.+.+||||.... . -|+..|..|++||+.+.-..
T Consensus 8 y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~------~a~~~f~~i~~Ay~~L~d~~ 62 (386)
T PRK14289 8 YEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD-K------EAEEKFKEAAEAYDVLSDPD 62 (386)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-h------HHHHHHHHHHHHHHHhcCHH
Confidence 3444555556678899999999999999997631 1 14556677777776655443
No 77
>PRK07735 NADH dehydrogenase subunit C; Validated
Probab=92.71 E-value=5.1 Score=46.93 Aligned_cols=6 Identities=0% Similarity=-0.501 Sum_probs=2.7
Q ss_pred HHHHHh
Q 002109 903 VQQIYC 908 (965)
Q Consensus 903 ~a~~~~ 908 (965)
+.|+-|
T Consensus 390 Ea~DMF 395 (430)
T PRK07735 390 EAYDLL 395 (430)
T ss_pred HHHHHh
Confidence 444444
No 78
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=0.079 Score=56.68 Aligned_cols=54 Identities=20% Similarity=0.301 Sum_probs=37.2
Q ss_pred CCccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHH
Q 002109 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKV 903 (965)
Q Consensus 850 ~W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~ 903 (965)
.+.-+++..-.+...|||+||+..+++||||...-+.+.+..+-..+.+..|.+
T Consensus 101 PyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD 154 (230)
T KOG0721|consen 101 PYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTD 154 (230)
T ss_pred cHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcc
Confidence 456677777788899999999999999999987533332222224455555543
No 79
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=92.50 E-value=20 Score=40.05 Aligned_cols=6 Identities=17% Similarity=0.518 Sum_probs=2.4
Q ss_pred cccccc
Q 002109 336 AEDVWL 341 (965)
Q Consensus 336 ~~dvwl 341 (965)
.|-|||
T Consensus 149 pdti~l 154 (445)
T KOG2891|consen 149 PDTIHL 154 (445)
T ss_pred CCceee
Confidence 333443
No 80
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.43 E-value=0.097 Score=61.11 Aligned_cols=49 Identities=27% Similarity=0.378 Sum_probs=34.2
Q ss_pred CcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109 854 VSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC 908 (965)
Q Consensus 854 v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~ 908 (965)
+++.---.+..||++|||.-|.+||||.+- .++ -|..+|.+|+.|++++
T Consensus 14 L~v~~~a~d~eik~~YRklALq~HPDknpd---~ie---eat~~F~~i~aAYeVL 62 (508)
T KOG0717|consen 14 LGVERDADDDEIKKNYRKLALQYHPDKNPD---RIE---EATQQFQLIQAAYEVL 62 (508)
T ss_pred hcccccCCHHHHHHHHHHHHHhhCCCCCCc---cHH---HHHHHHHHHHHHHHHh
Confidence 344444466889999999999999999653 222 2566777777776543
No 81
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.41 E-value=0.21 Score=57.90 Aligned_cols=81 Identities=28% Similarity=0.313 Sum_probs=56.7
Q ss_pred cccccHHHHhhcccccc----CCCCCCccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHH------
Q 002109 829 GKEGNIRALLATMQYVL----WPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVF------ 898 (965)
Q Consensus 829 gke~nIRaLLssL~~VL----W~~~~W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF------ 898 (965)
-+.++||.+|...+.-| |-+ -|+.+++.-+.....+||+|+|.-|.+||||... . ++-|+..|
T Consensus 351 ~~s~e~r~~l~~A~~aLkkSkRkd-~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ag--s----q~eaE~kFkevgeA 423 (486)
T KOG0550|consen 351 EKDCEIRRTLREAQLALKKSKRKD-WYKILGISRNASDDEIKKAYRKLALVHHPDKNAG--S----QKEAEAKFKEVGEA 423 (486)
T ss_pred ccccchHHHHHHHHHHHHHhhhhh-HHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcc--h----hHHHHHHHHHHHHH
Confidence 45578888887776544 321 1467777778888999999999999999999874 2 34455555
Q ss_pred -HHHHHHHHHhhhhhhccc
Q 002109 899 -DLLKVQQIYCRFFILLCL 916 (965)
Q Consensus 899 -~~Ln~a~~~~r~~~~~~~ 916 (965)
.+|.+.-++-||-+.--|
T Consensus 424 y~il~d~~kr~r~dsg~dl 442 (486)
T KOG0550|consen 424 YTILSDPMKRVRFDSGQDL 442 (486)
T ss_pred HHHhcCHHHHhhcccccch
Confidence 555556666677766444
No 82
>PHA02624 large T antigen; Provisional
Probab=92.22 E-value=0.11 Score=63.15 Aligned_cols=47 Identities=17% Similarity=0.182 Sum_probs=37.7
Q ss_pred hhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhh
Q 002109 861 TAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFF 911 (965)
Q Consensus 861 ~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~ 911 (965)
+...||++|||+++.+||||. .+.++--..+..|.+|.+...+.+|+
T Consensus 26 s~~eIKkAYRkLAkkyHPDKg----Gdeekfk~Ln~AYevL~d~~k~~r~~ 72 (647)
T PHA02624 26 NLPLMRKAYLRKCKEYHPDKG----GDEEKMKRLNSLYKKLQEGVKSARQS 72 (647)
T ss_pred CHHHHHHHHHHHHHHHCcCCC----CcHHHHHHHHHHHHHHhcHHHhhhcc
Confidence 668899999999999999993 34444444788888888888888883
No 83
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=89.82 E-value=6 Score=47.62 Aligned_cols=14 Identities=43% Similarity=0.738 Sum_probs=11.3
Q ss_pred cccchhhhhccCCC
Q 002109 748 IVDDLSSIFGAAGS 761 (965)
Q Consensus 748 i~DDlss~Fg~~~~ 761 (965)
|-|-|.++|++.++
T Consensus 360 I~dkl~s~~~~~~~ 373 (591)
T KOG2412|consen 360 IFDKLDSLFGGIPD 373 (591)
T ss_pred HHHHHHHHhcCCCC
Confidence 66788899998874
No 84
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=89.36 E-value=0.29 Score=60.58 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=36.2
Q ss_pred ccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHH-HHHHHHHHHHHHHHhhhhh
Q 002109 852 QPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI-AEKVFDLLKVQQIYCRFFI 912 (965)
Q Consensus 852 ~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i-A~~vF~~Ln~a~~~~r~~~ 912 (965)
.-+++..-.+...||++||++++.+||||... ...+++|. ....|.+|.+...+..|-.
T Consensus 6 eVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~--~eAeekFqeINEAYEVLSDP~KRa~YD~ 65 (871)
T TIGR03835 6 EVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA--PDAASIFAEINEANDVLSNPKKRANYDK 65 (871)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCCHHHHHHHhh
Confidence 34455556678999999999999999999753 22222221 3444444444444444543
No 85
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=89.22 E-value=7.7 Score=46.74 Aligned_cols=9 Identities=33% Similarity=0.622 Sum_probs=3.7
Q ss_pred CCCCCCCCC
Q 002109 351 QPTSAPPPS 359 (965)
Q Consensus 351 ~P~saPPpS 359 (965)
+|++.|-|+
T Consensus 3 ~pl~ep~p~ 11 (591)
T KOG2412|consen 3 IPLEEPCPK 11 (591)
T ss_pred CCCCCCCCC
Confidence 444444333
No 86
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=89.18 E-value=8.7 Score=46.28 Aligned_cols=15 Identities=13% Similarity=0.426 Sum_probs=9.3
Q ss_pred hHHhHHHHHHHHhcc
Q 002109 815 IAETLDVEIKRWAAG 829 (965)
Q Consensus 815 l~d~~~~ki~~W~~g 829 (965)
|.--|-.+|+.|..+
T Consensus 449 ~~~gv~~~i~~w~~~ 463 (492)
T PF02029_consen 449 LKVGVASRINQWLTK 463 (492)
T ss_pred hhhHHHHHHHHhhcC
Confidence 344556677777754
No 87
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=89.11 E-value=0.45 Score=55.62 Aligned_cols=86 Identities=22% Similarity=0.329 Sum_probs=52.0
Q ss_pred HHHHhc-c-ccccHHHHhhccccccCCCCCCccCcccccchhhhHhHHhhhccccccCccccccCCC------HHHHHH-
Q 002109 823 IKRWAA-G-KEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGAN------LQQKYI- 893 (965)
Q Consensus 823 i~~W~~-g-ke~nIRaLLssL~~VLW~~~~W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~------~eqk~i- 893 (965)
|-.|.- | ---|||. |+-+-.=+|+ .|.-+++..--....||++||+...+.||||+.. .. .|.+|+
T Consensus 74 ivgWl~i~~L~~~I~~-~k~~~~~~fD--PyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~--mvn~~rse~Ee~y~~ 148 (610)
T COG5407 74 IVGWLVISYLISNIRT-LKIEYRRGFD--PYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPP--MVNELRSEYEEKYKT 148 (610)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHcCCC--hHHhhcccCCCcHHHHHHHHHhheeecChhhcCC--CChhHHHHHHHHHHH
Confidence 567763 1 0123333 2333334453 4556777777777999999999999999999985 33 344444
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 002109 894 AEKVFDLLKVQQIYCRFFIL 913 (965)
Q Consensus 894 A~~vF~~Ln~a~~~~r~~~~ 913 (965)
..+.|-.|.+-..+.-|-..
T Consensus 149 ItkAY~~lTd~k~renyl~y 168 (610)
T COG5407 149 ITKAYGLLTDKKRRENYLNY 168 (610)
T ss_pred HHHHHHhhhhHHHHHHHHhc
Confidence 45555555555445545433
No 88
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.13 E-value=5.1 Score=43.94 Aligned_cols=10 Identities=50% Similarity=0.826 Sum_probs=6.3
Q ss_pred cccchhhhhc
Q 002109 748 IVDDLSSIFG 757 (965)
Q Consensus 748 i~DDlss~Fg 757 (965)
..+||++-||
T Consensus 216 ~ledLas~f~ 225 (299)
T KOG3054|consen 216 PLEDLASEFG 225 (299)
T ss_pred eHHHHHHHhC
Confidence 3467777774
No 89
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=85.23 E-value=1e+02 Score=37.72 Aligned_cols=10 Identities=30% Similarity=0.421 Sum_probs=4.8
Q ss_pred CccccccCCh
Q 002109 764 GEFQDVEGET 773 (965)
Q Consensus 764 ~~f~~~~~e~ 773 (965)
+.|+.+--|-
T Consensus 250 s~fdp~rrei 259 (514)
T TIGR03319 250 SGFDPVRREI 259 (514)
T ss_pred cCCchHHHHH
Confidence 3566554333
No 90
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.62 E-value=8.2 Score=42.42 Aligned_cols=14 Identities=36% Similarity=0.188 Sum_probs=8.7
Q ss_pred ccccccc------ccccccC
Q 002109 338 DVWLTVS------EIPLFTQ 351 (965)
Q Consensus 338 dvwltvs------~i~l~~~ 351 (965)
.||+-|+ ||+|+..
T Consensus 4 ~v~vlVaa~llV~~i~l~l~ 23 (299)
T KOG3054|consen 4 IVAVLVAAALLVAVILLFLW 23 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 4566655 7777654
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=82.33 E-value=3.3 Score=47.65 Aligned_cols=54 Identities=24% Similarity=0.294 Sum_probs=40.9
Q ss_pred CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC 908 (965)
Q Consensus 851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~ 908 (965)
|+.+++----....|-|+|||+..+||||-++. .|.|-.|++-|.-+--|.+++
T Consensus 397 YKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqd----EeEKKkAEKKFIDIAAAKEVL 450 (504)
T KOG0624|consen 397 YKILGVKRNASKQEITKAYRKLAQKWHPDNFQD----EEEKKKAEKKFIDIAAAKEVL 450 (504)
T ss_pred HHHhhhcccccHHHHHHHHHHHHHhcCCccccC----HHHHHHHHHhhhhHHHHHHhh
Confidence 444555545555779999999999999999973 466778999998777776543
No 92
>PRK00106 hypothetical protein; Provisional
Probab=82.06 E-value=1.4e+02 Score=36.86 Aligned_cols=12 Identities=8% Similarity=0.476 Sum_probs=6.1
Q ss_pred ccHHHHhhcccc
Q 002109 832 GNIRALLATMQY 843 (965)
Q Consensus 832 ~nIRaLLssL~~ 843 (965)
.+|-.||..|.+
T Consensus 332 ~e~~~~lg~l~~ 343 (535)
T PRK00106 332 PDLIKIMGRLQF 343 (535)
T ss_pred HHHHHHHHHHhh
Confidence 344455555544
No 93
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=81.40 E-value=1.4 Score=49.39 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=45.6
Q ss_pred ccCCCCCCccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhh
Q 002109 844 VLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFF 911 (965)
Q Consensus 844 VLW~~~~W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~ 911 (965)
++|...-|.-+++..=-+...||++|++..-..|||-.... .|+..|..|.+||+++.-.
T Consensus 39 ~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~--------~a~~kF~eI~~AYEiLsd~ 98 (288)
T KOG0715|consen 39 IISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK--------EASKKFKEISEAYEILSDE 98 (288)
T ss_pred cCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc--------chhhHHHHHHHHHHHhcCH
Confidence 33444345556666666789999999999999999998743 7788899999998876533
No 94
>PRK12704 phosphodiesterase; Provisional
Probab=80.94 E-value=1.5e+02 Score=36.43 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=4.9
Q ss_pred ccccccCChHH
Q 002109 765 EFQDVEGETEE 775 (965)
Q Consensus 765 ~f~~~~~e~~~ 775 (965)
.|+++.-|...
T Consensus 257 ~~~~~rre~a~ 267 (520)
T PRK12704 257 GFDPIRREIAR 267 (520)
T ss_pred cCChhhHHHHH
Confidence 45554433333
No 95
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=80.92 E-value=1.3e+02 Score=36.01 Aligned_cols=6 Identities=33% Similarity=0.284 Sum_probs=2.5
Q ss_pred cccccc
Q 002109 914 LCLEGF 919 (965)
Q Consensus 914 ~~~~~~ 919 (965)
.+|||+
T Consensus 512 FpLPGe 517 (630)
T KOG0742|consen 512 FPLPGE 517 (630)
T ss_pred cCCCCh
Confidence 344443
No 96
>PRK00106 hypothetical protein; Provisional
Probab=77.50 E-value=1.9e+02 Score=35.72 Aligned_cols=7 Identities=14% Similarity=0.491 Sum_probs=3.5
Q ss_pred Ccccccc
Q 002109 764 GEFQDVE 770 (965)
Q Consensus 764 ~~f~~~~ 770 (965)
+.|+.+-
T Consensus 271 S~fdpvR 277 (535)
T PRK00106 271 SGFDPIR 277 (535)
T ss_pred eCCChHH
Confidence 3566543
No 97
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=77.10 E-value=1.2e+02 Score=33.42 Aligned_cols=6 Identities=0% Similarity=0.235 Sum_probs=2.6
Q ss_pred HHhHHH
Q 002109 816 AETLDV 821 (965)
Q Consensus 816 ~d~~~~ 821 (965)
.|.|..
T Consensus 210 ~D~~h~ 215 (246)
T PF00769_consen 210 LDIIHA 215 (246)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 444443
No 98
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=75.46 E-value=13 Score=47.72 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=10.4
Q ss_pred CCCCccccccccccccccc
Q 002109 326 TPKSEDLFDSAEDVWLTVS 344 (965)
Q Consensus 326 ~p~~~~~~~~~~dvwltvs 344 (965)
+-.+-++.....||||.+-
T Consensus 669 FsqVrEa~~~~~dv~lNla 687 (1018)
T KOG2002|consen 669 FSQVREATSDFEDVWLNLA 687 (1018)
T ss_pred HHHHHHHHhhCCceeeeHH
Confidence 3334444444667887655
No 99
>PRK12472 hypothetical protein; Provisional
Probab=74.21 E-value=66 Score=38.83 Aligned_cols=25 Identities=20% Similarity=0.107 Sum_probs=10.3
Q ss_pred HhhhhcCCCCcCCCCCCCCCCcchh
Q 002109 417 DFAMSRSWNNVNEYGEVPSPEDVES 441 (965)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (965)
-|.....|....=.+.+....++.+
T Consensus 150 LFd~V~vGTpVIIt~td~~p~~~~~ 174 (508)
T PRK12472 150 LFDKTRIGMRVIVSPNDAAPVDISH 174 (508)
T ss_pred HHhcCCCCCEEEEECCCCCccccCC
Confidence 3444444544333333333343433
No 100
>PRK12704 phosphodiesterase; Provisional
Probab=73.37 E-value=2.3e+02 Score=34.77 Aligned_cols=9 Identities=22% Similarity=0.065 Sum_probs=4.3
Q ss_pred hhccccccC
Q 002109 870 RKATLCIHP 878 (965)
Q Consensus 870 rKA~l~vHP 878 (965)
..+|++.|-
T Consensus 400 ~~aI~~HHe 408 (520)
T PRK12704 400 INAIAAHHG 408 (520)
T ss_pred HHHHHHcCC
Confidence 445555553
No 101
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=72.61 E-value=2.1 Score=45.80 Aligned_cols=38 Identities=37% Similarity=0.461 Sum_probs=26.7
Q ss_pred hhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHH
Q 002109 863 AAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQI 906 (965)
Q Consensus 863 ~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~ 906 (965)
..+|++|+++.+.+||||... . +..|+.-|..+++|++
T Consensus 18 ~~i~ka~~~~a~~~hpdk~~~-----~-~~~~~~~~~~~~ea~~ 55 (306)
T KOG0714|consen 18 EDIKKAYRKLALKYHPDKNPS-----P-KEVAEAKFKEIAEAYE 55 (306)
T ss_pred HHHHHHHHHHHHhhCCCCCCC-----c-hhhHHHHHhhhhcccc
Confidence 389999999999999999442 2 3444446665555433
No 102
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=71.98 E-value=61 Score=38.11 Aligned_cols=19 Identities=32% Similarity=0.265 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002109 448 AAAMKEAMDRAEAKFRHAK 466 (965)
Q Consensus 448 aAa~k~A~~eae~k~r~~k 466 (965)
+|-..+|.--|+.|+|++.
T Consensus 280 FaKlseALy~adrKAReeV 298 (506)
T KOG2441|consen 280 FAKLSEALYIADRKAREEV 298 (506)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566666676665533
No 103
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=71.75 E-value=3.5 Score=40.09 Aligned_cols=43 Identities=26% Similarity=0.491 Sum_probs=33.6
Q ss_pred CcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHH
Q 002109 854 VSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIY 907 (965)
Q Consensus 854 v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~ 907 (965)
+++..-++..+||.+.||+++.-|||+ |.+ =|||-+| |+|.+.
T Consensus 62 L~v~~s~~k~KikeaHrriM~~NHPD~----GGS---PYlAsKI----NEAKdl 104 (112)
T KOG0723|consen 62 LGVTPSLDKDKIKEAHRRIMLANHPDR----GGS---PYLASKI----NEAKDL 104 (112)
T ss_pred hCCCccccHHHHHHHHHHHHHcCCCcC----CCC---HHHHHHH----HHHHHH
Confidence 455567788999999999999999999 444 5888765 777654
No 104
>PRK12472 hypothetical protein; Provisional
Probab=70.38 E-value=1.3e+02 Score=36.45 Aligned_cols=14 Identities=36% Similarity=0.268 Sum_probs=6.3
Q ss_pred CCCCCCCCCCCCCC
Q 002109 699 SSRPSSAPRPRANT 712 (965)
Q Consensus 699 ~Sr~sSaPrsr~~s 712 (965)
.||...-=+.|.++
T Consensus 327 isr~tq~lyvr~~t 340 (508)
T PRK12472 327 ISRATQKLYVRRNT 340 (508)
T ss_pred EEcccceEEEeccc
Confidence 34444444444444
No 105
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=69.11 E-value=4.6 Score=41.92 Aligned_cols=47 Identities=28% Similarity=0.282 Sum_probs=41.3
Q ss_pred hhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHH
Q 002109 861 TAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIY 907 (965)
Q Consensus 861 ~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~ 907 (965)
....|++.|++++.--|||++...|..++--.+++..+..|+++|.-
T Consensus 126 ~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~ 172 (174)
T COG1076 126 DQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYED 172 (174)
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 34789999999999999999998887777777799999999999764
No 106
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=67.35 E-value=4.2 Score=45.21 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=37.4
Q ss_pred hhhhHhHHhhhccccccCccccccCCCHHH---HHHHHHHHHHHHHHHHHhhhhhh
Q 002109 861 TAAAVKKCYRKATLCIHPDKVQQKGANLQQ---KYIAEKVFDLLKVQQIYCRFFIL 913 (965)
Q Consensus 861 ~~~~VKk~YrKA~l~vHPDK~~~~~~~~eq---k~iA~~vF~~Ln~a~~~~r~~~~ 913 (965)
+|.+|+++.+|-++..||||... |+++-+ =.|.+..|.+|.+...+.-|-+-
T Consensus 59 ~~~qi~kah~kkv~kyHPDk~aa-~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 59 IPPQILKAHKKKVYKYHPDKTAA-GGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred CcHHHHHHHHHHHHHhCccchhc-cCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence 46789999999999999999854 444333 23467778888877666666543
No 107
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=65.07 E-value=3.9e+02 Score=34.14 Aligned_cols=8 Identities=25% Similarity=0.144 Sum_probs=4.4
Q ss_pred ccCCCCCC
Q 002109 66 LGNLGKKE 73 (965)
Q Consensus 66 lgg~g~~~ 73 (965)
.=|||-+.
T Consensus 165 ~~g~~~~~ 172 (697)
T PF09726_consen 165 TLGFGFKS 172 (697)
T ss_pred EeeccHHH
Confidence 33666555
No 108
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=63.91 E-value=19 Score=45.27 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=15.0
Q ss_pred CCCccccccCccCCCCCCccccchhhh
Q 002109 128 EDPFGVSESTSTHVGSSSEVFTDRLEE 154 (965)
Q Consensus 128 dDpF~v~~stSs~~~sss~~FtD~L~~ 154 (965)
+|+|-++-.++..+. +-+.|-..|-.
T Consensus 385 ~~~f~lL~n~vkdT~-aE~yfLSILQh 410 (1102)
T KOG1924|consen 385 NEVFELLANTVKDTG-AEPYFLSILQH 410 (1102)
T ss_pred HHHHHHHHHhhhhcc-ccchHHHHHHH
Confidence 367777777666442 33456655543
No 109
>PTZ00491 major vault protein; Provisional
Probab=63.66 E-value=2.2e+02 Score=36.94 Aligned_cols=6 Identities=33% Similarity=0.468 Sum_probs=2.6
Q ss_pred CCCccc
Q 002109 743 SSTTNI 748 (965)
Q Consensus 743 sSs~ni 748 (965)
++..|+
T Consensus 831 ~sPiNL 836 (850)
T PTZ00491 831 KSPINL 836 (850)
T ss_pred CCchhH
Confidence 344444
No 110
>PF15195 TMEM210: TMEM210 family
Probab=63.46 E-value=5 Score=38.21 Aligned_cols=9 Identities=44% Similarity=0.287 Sum_probs=4.3
Q ss_pred ccccccccc
Q 002109 338 DVWLTVSEI 346 (965)
Q Consensus 338 dvwltvs~i 346 (965)
|-.|.||-+
T Consensus 79 DpDleVsmm 87 (116)
T PF15195_consen 79 DPDLEVSMM 87 (116)
T ss_pred CCCcccccc
Confidence 344555533
No 111
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=61.87 E-value=1e+02 Score=40.16 Aligned_cols=8 Identities=25% Similarity=0.414 Sum_probs=3.9
Q ss_pred ccccccCC
Q 002109 345 EIPLFTQP 352 (965)
Q Consensus 345 ~i~l~~~P 352 (965)
||--+..|
T Consensus 610 ~~~~l~~~ 617 (1018)
T KOG2002|consen 610 YIQALHNP 617 (1018)
T ss_pred HHHHhccc
Confidence 55555444
No 112
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=61.00 E-value=50 Score=34.40 Aligned_cols=18 Identities=33% Similarity=0.311 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002109 448 AAAMKEAMDRAEAKFRHA 465 (965)
Q Consensus 448 aAa~k~A~~eae~k~r~~ 465 (965)
+|...+|+..|+.++|++
T Consensus 107 Fa~LseAL~~Ad~~aRee 124 (158)
T PF02731_consen 107 FAKLSEALYIADRKAREE 124 (158)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567778888888777663
No 113
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=54.81 E-value=66 Score=38.17 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=5.4
Q ss_pred cCCCCCCCCC
Q 002109 18 GLPGLRTSST 27 (965)
Q Consensus 18 ~~pgl~~~~~ 27 (965)
|.+|||-+..
T Consensus 144 gk~gLkfYTd 153 (518)
T KOG1830|consen 144 GKDGLKFYTD 153 (518)
T ss_pred CcccceeecC
Confidence 4555555554
No 114
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=53.36 E-value=64 Score=38.95 Aligned_cols=19 Identities=11% Similarity=0.347 Sum_probs=10.7
Q ss_pred ccCcccc-cchhhhHhHHhh
Q 002109 852 QPVSLTD-LITAAAVKKCYR 870 (965)
Q Consensus 852 ~~v~~~d-l~~~~~VKk~Yr 870 (965)
++++|+. +|+.+.|-..|.
T Consensus 643 kl~gmgpk~Vt~~mie~lYk 662 (708)
T KOG3654|consen 643 KLTGMGPKMVTKKMIEGLYK 662 (708)
T ss_pred hhhccCchhhHHHHHHHHhh
Confidence 4455544 556666666664
No 115
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=49.69 E-value=64 Score=36.83 Aligned_cols=14 Identities=36% Similarity=0.646 Sum_probs=7.8
Q ss_pred ccccccCCCCCCCC
Q 002109 345 EIPLFTQPTSAPPP 358 (965)
Q Consensus 345 ~i~l~~~P~saPPp 358 (965)
-|-++.||+..|++
T Consensus 194 ~i~~TDq~~~~p~~ 207 (321)
T PF07946_consen 194 YIHFTDQPSGKPPT 207 (321)
T ss_pred EEEEECCCCCCCCC
Confidence 45556666665444
No 116
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=47.75 E-value=67 Score=40.53 Aligned_cols=6 Identities=67% Similarity=1.602 Sum_probs=2.6
Q ss_pred CCCCCC
Q 002109 361 PPPPRP 366 (965)
Q Consensus 361 PPPPpP 366 (965)
||||||
T Consensus 1040 P~PpPp 1045 (1106)
T KOG0162|consen 1040 PKPPPP 1045 (1106)
T ss_pred CCccCC
Confidence 444444
No 117
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=45.12 E-value=7.1 Score=41.50 Aligned_cols=7 Identities=43% Similarity=0.852 Sum_probs=3.0
Q ss_pred cchhhhh
Q 002109 750 DDLSSIF 756 (965)
Q Consensus 750 DDlss~F 756 (965)
+||++-|
T Consensus 117 edla~~f 123 (188)
T PF09756_consen 117 EDLAAEF 123 (188)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 4444444
No 118
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=44.80 E-value=23 Score=46.00 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=28.9
Q ss_pred hhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109 862 AAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC 908 (965)
Q Consensus 862 ~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~ 908 (965)
+.+++++|+|.-.+.||||.+. | .-.|..+|+|++-.
T Consensus 1299 ~~KirrqY~kLA~kYHPDKNPE-G---------RemFe~VnKAYE~L 1335 (2235)
T KOG1789|consen 1299 PAKIRRQYYKLAAKYHPDKNPE-G---------REMFERVNKAYELL 1335 (2235)
T ss_pred HHHHHHHHHHHHHHhCCCCCch-H---------HHHHHHHHHHHHHH
Confidence 4889999999999999999884 3 34566677776544
No 119
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=41.64 E-value=8.1e+02 Score=31.08 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=19.3
Q ss_pred hHHHHHHHHhccccccHHHHhhccccccCCCCCCccCcccccchh
Q 002109 818 TLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITA 862 (965)
Q Consensus 818 ~~~~ki~~W~~gke~nIRaLLssL~~VLW~~~~W~~v~~~dl~~~ 862 (965)
.++.+|..|.+-| |+..| |-.--+|.|+||.
T Consensus 592 lm~~rirpwV~KK---IiEfl-----------GeeE~tLVdFI~s 622 (668)
T KOG2253|consen 592 LMNERIRPWVNKK---IIEFL-----------GEEEDTLVDFICS 622 (668)
T ss_pred HHHHHHHHHHHHH---HHHHh-----------CCcchhHHHHHHH
Confidence 4566788888755 55543 3445566777764
No 120
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=41.39 E-value=1.2e+02 Score=36.79 Aligned_cols=8 Identities=38% Similarity=0.331 Sum_probs=4.0
Q ss_pred hhcccccc
Q 002109 686 QKNDNDLE 693 (965)
Q Consensus 686 ~~~~~dle 693 (965)
.+-.+|++
T Consensus 456 lklmed~d 463 (708)
T KOG3654|consen 456 LKLMEDLD 463 (708)
T ss_pred HHHHHhhc
Confidence 44445555
No 121
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=40.73 E-value=2.2e+02 Score=33.04 Aligned_cols=9 Identities=44% Similarity=0.313 Sum_probs=4.3
Q ss_pred ccccCcccc
Q 002109 874 LCIHPDKVQ 882 (965)
Q Consensus 874 l~vHPDK~~ 882 (965)
..|||+|++
T Consensus 294 g~~~p~k~~ 302 (361)
T KOG3634|consen 294 GRWKPPKVQ 302 (361)
T ss_pred CCCCCceee
Confidence 335555554
No 122
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.00 E-value=3.6e+02 Score=30.70 Aligned_cols=6 Identities=17% Similarity=0.977 Sum_probs=3.8
Q ss_pred HHHHhc
Q 002109 823 IKRWAA 828 (965)
Q Consensus 823 i~~W~~ 828 (965)
|..|..
T Consensus 236 VR~wVd 241 (290)
T KOG2689|consen 236 VRLWVD 241 (290)
T ss_pred HHHHHH
Confidence 557775
No 123
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=39.12 E-value=5e+02 Score=32.83 Aligned_cols=23 Identities=22% Similarity=0.559 Sum_probs=11.1
Q ss_pred cHHHHhhcccc---ccCC-CCCCccCc
Q 002109 833 NIRALLATMQY---VLWP-ESGWQPVS 855 (965)
Q Consensus 833 nIRaLLssL~~---VLW~-~~~W~~v~ 855 (965)
.|+.|+-|..+ =||. -..|..|.
T Consensus 563 ~~ksLI~tIP~~keeLf~~pidw~~ld 589 (668)
T KOG2253|consen 563 RIKSLIETIPTEKEELFAYPIDWDELD 589 (668)
T ss_pred HHHhhcccCCcchHHHhhCcccHHHHh
Confidence 45566665532 2343 34555444
No 124
>PRK12705 hypothetical protein; Provisional
Probab=38.55 E-value=8.5e+02 Score=30.07 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=5.5
Q ss_pred ccccccCChHHH
Q 002109 765 EFQDVEGETEER 776 (965)
Q Consensus 765 ~f~~~~~e~~~r 776 (965)
.|+.+..+...+
T Consensus 245 ~fdp~rreia~~ 256 (508)
T PRK12705 245 SFNPIRREIARL 256 (508)
T ss_pred ccCccchHHHHH
Confidence 455444444444
No 125
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=38.12 E-value=1.9e+02 Score=33.48 Aligned_cols=7 Identities=29% Similarity=0.174 Sum_probs=2.8
Q ss_pred hhhhcCC
Q 002109 418 FAMSRSW 424 (965)
Q Consensus 418 ~~~~~~~ 424 (965)
++|.+..
T Consensus 67 ~am~a~k 73 (361)
T KOG3634|consen 67 LAMLAAK 73 (361)
T ss_pred hhhhcCC
Confidence 3444333
No 126
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=35.19 E-value=53 Score=32.24 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=35.5
Q ss_pred hhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109 861 TAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR 909 (965)
Q Consensus 861 ~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r 909 (965)
....|+.+.++-.+.||||-+.+ .++++-+=+.-+..||.-.+..+
T Consensus 7 ~~~~l~~aLr~Fy~~VHPDlF~~---~P~~k~~Ne~SLk~Ln~~Ld~l~ 52 (112)
T PF14687_consen 7 SSPDLRSALRPFYFAVHPDLFGQ---HPEEKQVNEESLKLLNSYLDSLK 52 (112)
T ss_pred hhHHHHHHHHHHHHHhCCccccc---ChHHHHhhHHHHHHHHHHHHHHh
Confidence 44678999999999999999975 45677787888888886654433
No 127
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=34.89 E-value=25 Score=45.90 Aligned_cols=12 Identities=25% Similarity=0.312 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHH
Q 002109 892 YIAEKVFDLLKV 903 (965)
Q Consensus 892 ~iA~~vF~~Ln~ 903 (965)
-+|..|--+||.
T Consensus 603 qLadgvhyilNh 614 (2365)
T COG5178 603 QLADGVHYILNH 614 (2365)
T ss_pred HHhcchhHHhhc
Confidence 356666666653
No 128
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=28.38 E-value=1.1e+03 Score=28.41 Aligned_cols=6 Identities=50% Similarity=0.733 Sum_probs=2.6
Q ss_pred hhhccC
Q 002109 754 SIFGAA 759 (965)
Q Consensus 754 s~Fg~~ 759 (965)
..||+.
T Consensus 309 ~rFG~~ 314 (420)
T COG4942 309 RRFGQA 314 (420)
T ss_pred HHhccc
Confidence 345443
No 129
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=27.01 E-value=31 Score=38.51 Aligned_cols=30 Identities=20% Similarity=0.404 Sum_probs=23.5
Q ss_pred CcccccchhhhHhHHhhhccccccCccccc
Q 002109 854 VSLTDLITAAAVKKCYRKATLCIHPDKVQQ 883 (965)
Q Consensus 854 v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~ 883 (965)
++++---....++++||+.-...|||++..
T Consensus 39 LgV~Rea~KseIakAYRqLARrhHPDr~r~ 68 (329)
T KOG0722|consen 39 LGVAREANKSEIAKAYRQLARRHHPDRNRD 68 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHhCCcccCC
Confidence 333333355789999999999999999974
No 130
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=26.04 E-value=98 Score=36.56 Aligned_cols=27 Identities=41% Similarity=0.885 Sum_probs=17.4
Q ss_pred cccccCCCCCCCCCC--CCCCCCCccccc
Q 002109 346 IPLFTQPTSAPPPSR--PPPPRPTRVSKL 372 (965)
Q Consensus 346 i~l~~~P~saPPpSr--PPPPpP~~~~k~ 372 (965)
+..+..|+.+||+.. ||||+|++|+.+
T Consensus 516 v~~~g~~lp~~~~~qr~PpppaP~rpp~~ 544 (563)
T KOG1785|consen 516 VETSGKPLPAPPNPQRDPPPPAPPRPPRL 544 (563)
T ss_pred ccccCCCCCCCCCcccCCCCCCCCCCCCC
Confidence 334567777777665 666677676655
No 131
>PF05038 Cytochrom_B558a: Cytochrome Cytochrome b558 alpha-subunit; InterPro: IPR007732 Flavocytochrome b558 is the catalytic core of the respiratory-burst oxidase, an enzyme complex that catalyzes the NADPH-dependent reduction of O2 into the superoxide anion O2 in phagocytic cells. Flavocytochrome b558 is anchored in the plasma membrane. It is a heterodimer that consists of a large glycoprotein gp91phox (phox forphagocyte oxidase) (beta subunit) and a small protein p22phox (alpha subunit). The other components of the respiratory-burst oxidase are water-soluble proteins of cytosolic origin, namely p67phox, p47phox, p40phox and Rac. Upon cell stimulation, they assemble with the membrane-bound flavocytochrome b558 which becomes activated and generates O2- []. ; GO: 0020037 heme binding; PDB: 1WLP_A.
Probab=25.75 E-value=21 Score=37.61 Aligned_cols=19 Identities=42% Similarity=0.924 Sum_probs=1.6
Q ss_pred ccccccCCC--------CCCCCCCCCC
Q 002109 345 EIPLFTQPT--------SAPPPSRPPP 363 (965)
Q Consensus 345 ~i~l~~~P~--------saPPpSrPPP 363 (965)
|.|+...|- -.+||+.|||
T Consensus 130 W~Pi~~~~~~r~~~~~~i~qpPs~PPP 156 (186)
T PF05038_consen 130 WVPIEPKPKERPQVGGTIKQPPSNPPP 156 (186)
T ss_dssp ----------------------SS---
T ss_pred ceecCCCCCcCCCCCCcCCCCCCCccC
Confidence 777776652 3467777777
No 132
>PF04747 DUF612: Protein of unknown function, DUF612; InterPro: IPR006836 This family includes several uncharacterised proteins from Caenorhabditis elegans.
Probab=25.22 E-value=1e+03 Score=28.37 Aligned_cols=9 Identities=22% Similarity=0.283 Sum_probs=6.6
Q ss_pred ccchhhhhh
Q 002109 924 QDSFLVYYF 932 (965)
Q Consensus 924 ~~~~~~~~~ 932 (965)
+..||.||-
T Consensus 454 sMDFLDFVT 462 (510)
T PF04747_consen 454 SMDFLDFVT 462 (510)
T ss_pred cchHHhhcc
Confidence 467888876
No 133
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=23.24 E-value=1e+03 Score=26.30 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=4.1
Q ss_pred Ccccccchhh
Q 002109 854 VSLTDLITAA 863 (965)
Q Consensus 854 v~~~dl~~~~ 863 (965)
..-.+|||..
T Consensus 212 ~~~p~li~Gi 221 (250)
T PRK14474 212 VTSPELICGI 221 (250)
T ss_pred ecCcccccCe
Confidence 3334444443
No 134
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=22.83 E-value=1.2e+03 Score=26.80 Aligned_cols=6 Identities=33% Similarity=0.202 Sum_probs=2.5
Q ss_pred cccCCC
Q 002109 348 LFTQPT 353 (965)
Q Consensus 348 l~~~P~ 353 (965)
+.||..
T Consensus 89 ~~tQTD 94 (291)
T PF06098_consen 89 IDTQTD 94 (291)
T ss_pred hhhccc
Confidence 344444
No 135
>PLN02316 synthase/transferase
Probab=22.77 E-value=2.1e+02 Score=37.96 Aligned_cols=10 Identities=30% Similarity=0.630 Sum_probs=4.6
Q ss_pred CCCccccCCC
Q 002109 246 SNDTLFNMPS 255 (965)
Q Consensus 246 ~~~~~~~~~~ 255 (965)
...-+|-.|.
T Consensus 139 ~~~~~f~~P~ 148 (1036)
T PLN02316 139 RGNKLFVYPQ 148 (1036)
T ss_pred CCCeEEeccc
Confidence 3444555443
No 136
>PF06706 CTV_P6: Citrus tristeza virus 6-kDa protein; InterPro: IPR009584 This family consists of several Citrus tristeza virus (CTV) 6 kDa, 51 residue long hydrophobic (P6) proteins. The function of this family is unknown.
Probab=22.66 E-value=12 Score=31.03 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=15.0
Q ss_pred cchhhhhhcceeeeeecccc
Q 002109 925 DSFLVYYFGCFTFCCQFDDK 944 (965)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~ 944 (965)
.|||-|+.||||| |-|..-
T Consensus 6 QGfLT~LvG~~VF-~AF~~~ 24 (51)
T PF06706_consen 6 QGFLTFLVGIAVF-KAFAAL 24 (51)
T ss_pred HHHHHHHHHHHHH-HHHHHH
Confidence 5899999999999 555543
No 137
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=22.53 E-value=58 Score=38.76 Aligned_cols=7 Identities=29% Similarity=0.387 Sum_probs=2.8
Q ss_pred ccccchh
Q 002109 146 EVFTDRL 152 (965)
Q Consensus 146 ~~FtD~L 152 (965)
.-|.|+|
T Consensus 105 ~elad~L 111 (480)
T KOG2675|consen 105 NELADLL 111 (480)
T ss_pred HHHHHHh
Confidence 3344444
No 138
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=22.08 E-value=30 Score=39.56 Aligned_cols=14 Identities=7% Similarity=0.235 Sum_probs=6.0
Q ss_pred CCCccccchhhhcc
Q 002109 143 SSSEVFTDRLEEIG 156 (965)
Q Consensus 143 sss~~FtD~L~~ig 156 (965)
++...|.++|.-|+
T Consensus 98 P~~~~~~~lL~Pl~ 111 (312)
T PF01213_consen 98 PDQSELQELLKPLS 111 (312)
T ss_dssp --HHHHHHHCHHHH
T ss_pred CChhhHHHHHHHHH
Confidence 44445555554443
No 139
>PF08628 Nexin_C: Sorting nexin C terminal; InterPro: IPR013937 This region is found at the C terminus of proteins belonging to the nexin family. It is found on proteins which also contain IPR001683 from INTERPRO.
Probab=20.59 E-value=2.9e+02 Score=26.47 Aligned_cols=72 Identities=17% Similarity=0.307 Sum_probs=42.2
Q ss_pred ccccHHHHhhccccccCCCCCCccCcccccchhhh---HhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHH
Q 002109 830 KEGNIRALLATMQYVLWPESGWQPVSLTDLITAAA---VKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKV 903 (965)
Q Consensus 830 ke~nIRaLLssL~~VLW~~~~W~~v~~~dl~~~~~---VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~ 903 (965)
.+.+|=.+|..|+..+||+-.|.+..- --++.. -+..=+..+...-||-+..-=+.---+.-+..||+.|.+
T Consensus 36 se~~v~~~i~~l~~~lwP~g~~~~~~~--~Rt~~ek~~tr~~A~~~L~~~~P~~l~~vvG~~~~~~g~~~if~~LQ~ 110 (113)
T PF08628_consen 36 SEEQVARYIQLLRESLWPNGKLAEPPP--PRTEEEKLRTRQEARELLLSLLPDTLKKVVGSENSRRGARRIFEMLQN 110 (113)
T ss_pred CHHHHHHHHHHHHHhhCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHhcHHHHHHccCHHHHHHHHHHHHHHHCC
Confidence 345677789999999999765543332 112222 222222444667788877531222234457889988864
No 140
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.42 E-value=1.1e+03 Score=25.64 Aligned_cols=8 Identities=38% Similarity=0.758 Sum_probs=3.2
Q ss_pred CCCCCCCC
Q 002109 356 PPPSRPPP 363 (965)
Q Consensus 356 PPpSrPPP 363 (965)
||..+.||
T Consensus 31 ~~r~~Kpr 38 (227)
T KOG4691|consen 31 PARGRKPR 38 (227)
T ss_pred ccccCCCC
Confidence 33344444
Done!