RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 002111
(965 letters)
>gnl|CDD|233722 TIGR02093, P_ylase, glycogen/starch/alpha-glucan phosphorylases.
This family consists of phosphorylases. Members use
phosphate to break alpha 1,4 linkages between pairs of
glucose residues at the end of long glucose polymers,
releasing alpha-D-glucose 1-phosphate. The nomenclature
convention is to preface the name according to the
natural substrate, as in glycogen phosphorylase, starch
phosphorylase, maltodextrin phosphorylase, etc. Name
differences among these substrates reflect differences
in patterns of branching with alpha 1,6 linkages.
Members include allosterically regulated and unregulated
forms. A related family, TIGR02094, contains examples
known to act well on particularly small alpha 1,4
glucans, as may be found after import from exogenous
sources [Energy metabolism, Biosynthesis and degradation
of polysaccharides].
Length = 794
Score = 1069 bits (2767), Expect = 0.0
Identities = 400/872 (45%), Positives = 531/872 (60%), Gaps = 86/872 (9%)
Query: 96 IQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSMEFL 155
I YH E+T + + P + A A++VRD L+ W T E Y N KQ YYLS EFL
Sbjct: 1 ILYHLEYTYGKTIDDATPRDLYTALAKAVRDRLVDRWLETQEKYRDNNQKQVYYLSAEFL 60
Query: 156 QGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATL 215
GR L N + NLGL EAL +LG LE ++ E DA LGNGGLGRLA+CFLDS+ATL
Sbjct: 61 MGRLLGNNLLNLGLYDEVKEALRELGLDLEEILEIENDAGLGNGGLGRLAACFLDSLATL 120
Query: 216 NYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGS 275
PA GYG+RY+YGLFKQ+I Q E+ +DWL GNPWEI R D SY V+F G++
Sbjct: 121 GLPATGYGIRYEYGLFKQKIVDGWQVELPDDWLRYGNPWEIRRPDRSYEVRFGGRVELQP 180
Query: 276 DGKSH---WIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKA 332
D W+ E + A+ YD+P+PGY+T T LRLWS E+FDL AFNAGD+ +A
Sbjct: 181 DSDRLRPRWVPAETVLAIPYDVPVPGYRTDTVNTLRLWSAE-APEEFDLDAFNAGDYYEA 239
Query: 333 AEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFP 392
E AE I +LYP D + EGK LRLKQQY SASLQDII R + + +FP
Sbjct: 240 VEEKNRAENISRVLYPNDSTYEGKELRLKQQYFFVSASLQDIIRRHLETHP---DLSDFP 296
Query: 393 EKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFE 452
+KVA+Q+NDTHP L IPEL+R+LID +G+ W EAW+IT +T AYTNHT
Sbjct: 297 KKVAIQLNDTHPALAIPELMRLLIDEEGMDWDEAWDITTKTFAYTNHT------------ 344
Query: 453 LMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFV 512
LLP E +E +L ++ P LE I+ ++ F+
Sbjct: 345 ----LLP---EALEKWPVDLFQKLL-------PRHLE-------IIYEIN------RRFL 377
Query: 513 KTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEEKEAEAVQEPPQLVRMANLCV 572
+ GP DE + EE +++ V RMANL +
Sbjct: 378 AELAAK---------------GPGDEAK---IRRMSIIEEGQSKRV-------RMANLAI 412
Query: 573 VGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSW 632
VGSH+VNGVA +H+E++ ++ +FY+L+PEKF NKTNG+TPRRW+R NP LS++LT
Sbjct: 413 VGSHSVNGVAALHTELLKEDLLKDFYELYPEKFNNKTNGITPRRWLRLANPGLSALLTET 472
Query: 633 LGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDI 692
+G +DW+T+ L +L +AD+ + +FR K+ NK ++ ++IKE TG V P+++FD+
Sbjct: 473 IG-DDWLTDLDLLKKLEPYADDSEFLEEFRQVKQANKQRLAAYIKEHTGVEVDPNSIFDV 531
Query: 693 QVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVK 752
QVKR+HEYKRQL+N+L ++Y Y ++KE VPR IFGGKA Y AK I+K
Sbjct: 532 QVKRLHEYKRQLLNVLHVIYLYNRIKEDPP----KDIVPRTVIFGGKAAPGYHMAKLIIK 587
Query: 753 FITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKF 812
I V VN+DP +GD LKV+FVP+YNVS+AEL+IPA++LS+ ISTAG EASGT NMKF
Sbjct: 588 LINSVAEVVNNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKF 647
Query: 813 AMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSEGKFVPDARFEEV 870
+NG + IGTLDGANVEIR+EVG EN F+FG E+ LR++ + D + V
Sbjct: 648 MLNGALTIGTLDGANVEIREEVGAENIFIFGLTVEEVEALREKGYNPREYYEADPELKRV 707
Query: 871 KKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQK 927
+ SG F + + L SL + D F V DF +Y++ QE+VD Y DQ
Sbjct: 708 LDLISSGTFSPGDPGLFRPLYDSLLNHG-----DPFFVLADFAAYVDAQERVDALYRDQL 762
Query: 928 RWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 959
WT+ SI+N A S KFSSDRTI+EYA++IW++
Sbjct: 763 EWTKKSILNIANSGKFSSDRTIREYAKEIWHV 794
>gnl|CDD|215868 pfam00343, Phosphorylase, Carbohydrate phosphorylase. The members
of this family catalyze the formation of glucose
1-phosphate from one of the following polyglucoses;
glycogen, starch, glucan or maltodextrin.
Length = 712
Score = 1047 bits (2709), Expect = 0.0
Identities = 398/791 (50%), Positives = 521/791 (65%), Gaps = 84/791 (10%)
Query: 176 ALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRI 235
AL +LG +LE ++ +E DA LGNGGLGRLA+CFLDS+ATL PA+GYG+RY+YG+F+Q+I
Sbjct: 1 ALKELGLNLEELLEEENDAGLGNGGLGRLAACFLDSLATLGLPAYGYGIRYEYGMFEQKI 60
Query: 236 TKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIP 295
Q E+ +DWLE GNPWEIER DV YPV+FYGK+ K+ W E + AVAYD P
Sbjct: 61 VDGWQVELPDDWLEYGNPWEIERPDVRYPVRFYGKVEEKEGRKTKWDDTEVVLAVAYDTP 120
Query: 296 IPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEG 355
IPGY+T T LRLWS SE+F+L+ FN GD+ A E AE I +LYP D + EG
Sbjct: 121 IPGYRTNNTNTLRLWSAK-ASEEFNLADFNDGDYLAAVEDKNRAENISRVLYPNDNTFEG 179
Query: 356 KVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRIL 415
K LRLKQQY L SA+LQDII RF K+S + EFP+KVA+Q+NDTHPTL IPEL+RIL
Sbjct: 180 KELRLKQQYFLVSATLQDIIRRF-KKSHKS--LSEFPDKVAIQLNDTHPTLAIPELMRIL 236
Query: 416 IDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHT 475
ID +GLSW EAW IT +T AYTNHTVLPEALEKW L++KLLPRH++II I+E +
Sbjct: 237 IDEEGLSWDEAWEITTKTFAYTNHTVLPEALEKWPVHLVEKLLPRHLQIIYEINERFLKL 296
Query: 476 IVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGP 535
+ ++ P E +L+ I+ DE G
Sbjct: 297 VWEKW----PGD-EDKLRRMSII-------------------------------DEGAGK 320
Query: 536 VDEELESAQEDGVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFN 595
VRMA+L +VGSHAVNGVA +HS++V ++F
Sbjct: 321 R----------------------------VRMAHLAIVGSHAVNGVAALHSDLVKKDLFP 352
Query: 596 EFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNE 655
+F++LWP KFQNKTNG+TPRRW+ NP L++I+T LG ++WVT+ +L +L FAD+
Sbjct: 353 DFHELWPNKFQNKTNGITPRRWLLQANPGLAAIITKSLG-DEWVTDLEQLIKLEPFADDP 411
Query: 656 DLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYK 715
++ K+ NK ++ +I+++TG V+P+A+FD+QVKRIHEYKRQL+N+L ++YRY
Sbjct: 412 AFIEEWAEIKQANKQRLAEYIEKETGVVVNPNALFDVQVKRIHEYKRQLLNVLHVIYRYN 471
Query: 716 KMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIF 775
++KE VPRV IFGGKA Y AKRI+K I V VN+DP +GD LKV+F
Sbjct: 472 RIKEDP----PKDVVPRVVIFGGKAAPGYYMAKRIIKLINSVADVVNNDPAVGDKLKVVF 527
Query: 776 VPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVG 835
+P+Y VS+AE +IPAS++S+ ISTAG EASGTSNMKFA+NG + IGTLDGANVEI +EVG
Sbjct: 528 LPNYRVSLAEKIIPASDISEQISTAGTEASGTSNMKFALNGALTIGTLDGANVEIAEEVG 587
Query: 836 EENFFLFGARAHEIAGLRKE--RSEGKFVPDARFEEVKKFVKSGVFG---SYNYDELMGS 890
EEN F+FG A E+ LRK+ RS + D R +V + SG F + +++ S
Sbjct: 588 EENIFIFGLTAEEVEALRKKGYRSREYYKKDPRLRQVLDQIISGFFSPEDPDRFRDILDS 647
Query: 891 LEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQ 950
L+G DY+LV DFPSY++ Q++VDE Y D++ WT+ SI+N A S KFSSDRTI+
Sbjct: 648 LQGG------DYYLVFADFPSYVDAQKRVDELYKDREAWTKKSILNIANSGKFSSDRTIK 701
Query: 951 EYARDIWNIIP 961
EYA+ IW I P
Sbjct: 702 EYAKRIWGIEP 712
>gnl|CDD|223136 COG0058, GlgP, Glucan phosphorylase [Carbohydrate transport and
metabolism].
Length = 750
Score = 750 bits (1939), Expect = 0.0
Identities = 329/878 (37%), Positives = 446/878 (50%), Gaps = 138/878 (15%)
Query: 87 PDTASVASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQ 146
P +A ++ + + T +P + A VR+ L +W + + KQ
Sbjct: 4 PRLEQLAYNLWWSLDTTAGKLFRDADPEDWYEALHNPVRELLAADWLRLNQLARDEDFKQ 63
Query: 147 AYYLSMEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLAS 206
YYLSMEFL GR L N + NLG+ EAL +LG L E D LG GGLGRLA
Sbjct: 64 VYYLSMEFLIGRLLGNNLWNLGIYDDVQEALKELGYFLMEFGEHESDPGLG-GGLGRLAG 122
Query: 207 CFLDSMATLNYPAWGYGLRYKYGLFKQRITKDG-QEEVAEDWLELGNPWEIERNDVSYPV 265
CFLDS A L P GYGLRY+YG F+Q DG Q E+ ++WL+ GNPWE R+
Sbjct: 123 CFLDSAADLGLPLTGYGLRYRYGYFRQSD-VDGWQVELPDEWLKYGNPWEFLRDAE---- 177
Query: 266 KFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFN 325
V YD+P+PGY + LRLW V L FN
Sbjct: 178 -----------------------GVPYDVPVPGYDN-RVVTLRLWQAQVGRVPLYLLDFN 213
Query: 326 AGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGAN 385
G++ +A I +LYPGD K LRLKQ+Y L SA +QDI+AR
Sbjct: 214 VGENK------NDARNITRVLYPGDS----KELRLKQEYFLGSAGVQDILARGHLEHH-- 261
Query: 386 VNWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEA 445
+ + + +NDTHP L IPEL+R+LID +GLSW EAW I ++T YTNHT LPEA
Sbjct: 262 -DLDVLADH----LNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEA 316
Query: 446 LEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLKETRILENVDLPA 505
LE W +E+ + L R L+ +
Sbjct: 317 LETWP--------------VELFKKLL----------------------PRHLQIIYEIN 340
Query: 506 TFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEEKEAEAVQEPPQLV 565
V+ D++ G P++E V
Sbjct: 341 ARFLPEVRLLYLGDLI---------RRGSPIEE--------------------------V 365
Query: 566 RMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDL 625
MA L +VGSH+VNGV+++HSE+ F +F+ L+PEK N TNG+TPRRW+ NP L
Sbjct: 366 NMAVLALVGSHSVNGVSKLHSELSKKMWFADFHGLYPEKINNVTNGITPRRWLAPANPGL 425
Query: 626 SSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVS 685
+ +L +G E W+ + L EL FAD++ + KR NK ++ I ++TG V
Sbjct: 426 ADLLDEKIGDE-WLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRTGIEVD 484
Query: 686 PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRV-CIFGGKAFATY 744
P+A+FD Q +RIHEYKRQL+N+L I Y+ +KE +VPRV IF GKA
Sbjct: 485 PNALFDGQARRIHEYKRQLLNLLDIERLYRILKE--------DWVPRVQIIFAGKAHPAD 536
Query: 745 VQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEA 804
AK I+K I DV +N+ LKV+F+P+Y+VS+AELLIPA+++ + I TAG EA
Sbjct: 537 YAAKEIIKLINDVADVINN------KLKVVFLPNYDVSLAELLIPAADVWEQIPTAGKEA 590
Query: 805 SGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPD 864
SGTSNMK A+NG + +GTLDGANVEI + VG EN ++FG E+ LR + + +
Sbjct: 591 SGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGETVEEVDALRADGYDPNALYY 650
Query: 865 ARFEEVK---KFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDE 921
EVK + G F ++ D +V DF +Y+ QE+VD
Sbjct: 651 ELENEVKPVLDEIIDGRFSPGWKSRFKNLIDSLLPKFGTDRMMVLYDFKAYVPAQEEVDA 710
Query: 922 AYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 959
Y DQ+ WT+ +I+N A S FSSDRTI+EYA +IW+I
Sbjct: 711 LYRDQEAWTKKAILNIANSGLFSSDRTIREYAGEIWHI 748
>gnl|CDD|237881 PRK14985, PRK14985, maltodextrin phosphorylase; Provisional.
Length = 798
Score = 721 bits (1864), Expect = 0.0
Identities = 335/818 (40%), Positives = 466/818 (56%), Gaps = 95/818 (11%)
Query: 149 YLSMEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCF 208
Y+SMEFL GR N + NLG + L +L +++ +E D ALGNGGLGRLA+CF
Sbjct: 63 YISMEFLIGRLTGNNLLNLGWYDDVQDVLKAYDINLTDLLEEETDPALGNGGLGRLAACF 122
Query: 209 LDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFY 268
LDSMAT+ PA GYGL Y+YGLF+Q Q E +DW PW + V
Sbjct: 123 LDSMATVGQPATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRDSYPWFRHNEALDVQVGIG 182
Query: 269 GKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGD 328
GK+ DG+ W I A+D+P+ GY+ LRLW FDL+ FN GD
Sbjct: 183 GKVTK-QDGRERWEPAFTITGEAWDLPVVGYRNGVAQPLRLWQATHAHP-FDLTKFNDGD 240
Query: 329 HTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNW 388
+A + +AEK+ +LYP D GK LRL QQY C+ S+ DI+ R A
Sbjct: 241 FLRAEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHL---AGRKL 297
Query: 389 EEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEK 448
E P+ +Q+NDTHPT+ IPEL+R+L+D LSW +AW IT +T AYTNHT
Sbjct: 298 HELPDYEVIQLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKTFAYTNHT-------- 349
Query: 449 WSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFA 508
L+P E +E DE+LV + LL + + +I++ ++
Sbjct: 350 --------LMP---EALECWDEKLVKS-----------LLPRHM---QIIKEIN------ 378
Query: 509 DLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEEKEAEAVQEPPQLVRMA 568
F E T P D+ V +L AV Q VRMA
Sbjct: 379 TRFKTLVEKT--WPGDK---------KVWAKL----------------AVVHDKQ-VRMA 410
Query: 569 NLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSI 628
NLCVV AVNGVA +HS++V ++F E+++LWP KF N TNG+TPRRWI+ CNP L+++
Sbjct: 411 NLCVVSGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAAL 470
Query: 629 LTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDA 688
L L E W + +L L K+AD+ + Q+R K+ NK+++ F+K++TG ++P A
Sbjct: 471 LDKTLKKE-WANDLDQLINLEKYADDAAFRQQYREIKQANKVRLAEFVKQRTGIEINPQA 529
Query: 689 MFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAK 748
+FD+Q+KR+HEYKRQ +N+L I+ YK+++E +R VPRV +FG KA Y AK
Sbjct: 530 IFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADR----VPRVFLFGAKAAPGYYLAK 585
Query: 749 RIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTS 808
I+ I V +N+DP +GD LKV+F+PDY VS AELLIPA+++S+ ISTAG EASGT
Sbjct: 586 NIIFAINKVAEVINNDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTG 645
Query: 809 NMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVP----- 863
NMK A+NG + +GTLDGANVEI ++VGEEN F+FG ++ L + P
Sbjct: 646 NMKLALNGALTVGTLDGANVEIAEQVGEENIFIFGHTVEQVKALLA----KGYDPVKWRK 701
Query: 864 -DARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKV 919
D + V K ++SG + + +D+++ SL+ D +LV DF +Y+E Q++V
Sbjct: 702 KDKVLDAVLKELESGKYSDGDKHAFDQMLHSLKQG-----GDPYLVLADFAAYVEAQKQV 756
Query: 920 DEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIW 957
D Y DQ+ WTR +I+NTA FSSDR+I++Y IW
Sbjct: 757 DALYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIW 794
>gnl|CDD|184948 PRK14986, PRK14986, glycogen phosphorylase; Provisional.
Length = 815
Score = 709 bits (1831), Expect = 0.0
Identities = 361/859 (42%), Positives = 505/859 (58%), Gaps = 100/859 (11%)
Query: 119 ATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSMEFLQGRALLNAIGNLGLTGAYAEALS 178
AT +VRD L+ W + +Q YYLSMEFL GR L NA+ +LG+ AL
Sbjct: 44 ATLFAVRDRLVERWLRSNRAQLSQETRQVYYLSMEFLIGRTLSNALLSLGIYDDVQGALE 103
Query: 179 KLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKD 238
+G LE ++ +E D LGNGGLGRLA+CFLDS+ATL P GYG+RY YG+FKQ I
Sbjct: 104 AMGLDLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNIVNG 163
Query: 239 GQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI-VPGSDGKSHWIGGEDIKAVAYDIPIP 297
Q+E + WLE GNPWE +R++ Y V+F G+I G K+ WI E+I AVAYD IP
Sbjct: 164 RQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRIQQEGK--KTRWIETEEILAVAYDQIIP 221
Query: 298 GYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKV 357
GY T T LRLWS SE +L FN GD+ A E ++E + +LYP D + G+
Sbjct: 222 GYDTDATNTLRLWSAQASSE-INLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRE 280
Query: 358 LRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRILID 417
LRL+Q+Y L SA++QDI++R + + ++ +K+A+ +NDTHP L IPEL+R+LID
Sbjct: 281 LRLRQEYFLVSATVQDILSRHYQ---LHKTYDNLADKIAIHLNDTHPVLSIPELMRLLID 337
Query: 418 LKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIV 477
SW +A+ + + +YTN HT++
Sbjct: 338 EHKFSWDDAFEVCCQVFSYTN-----------------------------------HTLM 362
Query: 478 SEYGTADP-DLLEKRL-KETRILENVDLPATFADLFVKTKESTDVVPDD-----ELENCD 530
SE P D+L K L + +I+ ++ D F+KT + + P+D D
Sbjct: 363 SEALETWPVDMLGKILPRHLQIIFEIN------DYFLKTLQ--EQYPNDTDLLGRASIID 414
Query: 531 EEGGPVDEELESAQEDGVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVT 590
E G + VRMA L VV SH VNGV+E+HS ++
Sbjct: 415 ESNG----------------------------RRVRMAWLAVVVSHKVNGVSELHSNLMV 446
Query: 591 NEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRK 650
+F +F K++P +F N TNGVTPRRW+ NP LS++L +G W T+ +L+EL++
Sbjct: 447 QSLFADFAKIFPGRFCNVTNGVTPRRWLALANPSLSAVLDEHIG-RTWRTDLSQLSELKQ 505
Query: 651 FADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGI 710
D + R AK NK ++ +I ++ V+P A+FD+Q+KRIHEYKRQLMN+L +
Sbjct: 506 HCDYPMVNHAVRQAKLENKKRLAEYIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHV 565
Query: 711 VYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDL 770
+ RY ++K + AK+VPRV IF GKA + Y AK I+ I DV +N+DP+IGD
Sbjct: 566 ITRYNRIKA----DPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIGDK 621
Query: 771 LKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEI 830
LKV+F+P+Y+VS+A+L+IPA++LS+ IS AG EASGTSNMKFA+NG + IGTLDGANVE+
Sbjct: 622 LKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEM 681
Query: 831 RQEVGEENFFLFGARAHEIAGLRKE--RSEGKFVPDARFEEVKKFVKSGVFG---SYNYD 885
+ VGEEN F+FG A E+ LR++ + + D +V + SGVF Y
Sbjct: 682 LEHVGEENIFIFGNTAEEVEALRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEEPGRYR 741
Query: 886 ELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSS 945
+L+ SL FG D++ V D+ SY++CQ+KVDE Y +Q+ WTR +++N A FSS
Sbjct: 742 DLVDSL---INFG--DHYQVLADYRSYVDCQDKVDELYRNQEEWTRKAMLNIANMGYFSS 796
Query: 946 DRTIQEYARDIWNIIPVEL 964
DRTI+EYA +IW+I PV L
Sbjct: 797 DRTIKEYADEIWHIDPVRL 815
>gnl|CDD|99996 cd04300, GT1_Glycogen_Phosphorylase, This is a family of
oligosaccharide phosphorylases. It includes yeast and
mammalian glycogen phosphorylases, plant starch/glucan
phosphorylase, as well as the maltodextrin
phosphorylases of bacteria. The members of this family
catalyze the breakdown of oligosaccharides into
glucose-1-phosphate units. They are important allosteric
enzymes in carbohydrate metabolism. The allosteric
control mechanisms of yeast and mammalian members of
this family are different from that of bacterial
members. The members of this family belong to the GT-B
structural superfamily of glycoslytransferases, which
have characteristic N- and C-terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two
domains includes the catalytic center and permits a high
degree of flexibility.
Length = 797
Score = 660 bits (1705), Expect = 0.0
Identities = 210/409 (51%), Positives = 273/409 (66%), Gaps = 23/409 (5%)
Query: 560 EPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIR 619
+ VRMA+L +VGSH+VNGVA +HSE++ VF +FY+L+PEKF NKTNG+TPRRW+
Sbjct: 403 GGEKQVRMAHLAIVGSHSVNGVAALHSELLKETVFKDFYELYPEKFNNKTNGITPRRWLL 462
Query: 620 FCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEK 679
NP LS+++T +G +DWVT+ +L +L FAD+ +FRA K+ NK ++ ++IK+
Sbjct: 463 QANPGLSALITETIG-DDWVTDLDQLKKLEPFADDPAFLKEFRAIKQANKERLAAYIKKT 521
Query: 680 TGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGK 739
TG V PD++FD+QVKRIHEYKRQL+N+L I++ Y ++KE A VPR IFGGK
Sbjct: 522 TGVEVDPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENP----NADIVPRTFIFGGK 577
Query: 740 AFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHIST 799
A Y AK I+K I V VN+DP++GD LKV+F+P+YNVS+AE +IPA++LS+ IST
Sbjct: 578 AAPGYYMAKLIIKLINAVADVVNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQIST 637
Query: 800 AGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEG 859
AG EASGT NMKF +NG + IGTLDGANVEI +EVGEEN F+FG A E+ LR
Sbjct: 638 AGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIFGLTAEEVEALRANGYYP 697
Query: 860 KFV--PDARFEEVKKFVKSGVFGSYN-------YDELMGSLEGNEGFGQADYFLVGKDFP 910
D V + SG F + D L L GN D +LV DF
Sbjct: 698 ADYYEADPELRRVLDQIASGFFSPGDPGEFRPLVDSL---LNGN------DEYLVLADFE 748
Query: 911 SYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 959
SY++ QEKVD Y DQ+ W R SI+N A S KFSSDRTI+EYA DIWN+
Sbjct: 749 SYVDAQEKVDALYRDQEEWARKSILNIARSGKFSSDRTIREYAEDIWNV 797
Score = 608 bits (1571), Expect = 0.0
Identities = 211/382 (55%), Positives = 262/382 (68%), Gaps = 9/382 (2%)
Query: 93 ASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSM 152
+I H E+T PE+ + A A +VRD L+ WN T +YY + K+ YYLS+
Sbjct: 1 KKAIVDHLEYTLGKDPEEATDRDLYQALAYAVRDRLVERWNRTQQYYYDKDAKRVYYLSL 60
Query: 153 EFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSM 212
EFL GR L N + NLGL EAL++LG LE++ QEPDA LGNGGLGRLA+CFLDS+
Sbjct: 61 EFLMGRLLGNNLLNLGLYDEVREALAELGVDLEDLEEQEPDAGLGNGGLGRLAACFLDSL 120
Query: 213 ATLNYPAWGYGLRYKYGLFKQRITKDG-QEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 271
ATL P +GYG+RY+YGLFKQ+I DG Q E+ ++WL GNPWEI R DV+ PV+F G++
Sbjct: 121 ATLGLPGYGYGIRYEYGLFKQKI-VDGYQVELPDNWLRYGNPWEIRRPDVAVPVRFGGRV 179
Query: 272 VPGSDG---KSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGD 328
DG + W+ GE + AV YD PIPGY T T LRLWS SE+FDL AFN GD
Sbjct: 180 EHYEDGGRLRVRWVDGETVLAVPYDTPIPGYGTNTVNTLRLWSA-EASEEFDLDAFNRGD 238
Query: 329 HTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNW 388
+ +A E AE I +LYP D + EGK LRLKQQY SASLQDII RF+K G
Sbjct: 239 YIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKTHG---PL 295
Query: 389 EEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEK 448
EFP+KVA+Q+NDTHP L IPEL+RIL+D +GL W EAW+IT +T AYTNHT+LPEALEK
Sbjct: 296 SEFPDKVAIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALEK 355
Query: 449 WSFELMQKLLPRHMEIIEMIDE 470
W +L ++LLPRH+EII I+
Sbjct: 356 WPVDLFERLLPRHLEIIYEINR 377
>gnl|CDD|233723 TIGR02094, more_P_ylases, alpha-glucan phosphorylases. This family
consists of known phosphorylases, and homologs believed
to share the function of using inorganic phosphate to
cleave an alpha 1,4 linkage between the terminal glucose
residue and the rest of the polymer (maltodextrin,
glycogen, etc.). The name of the glucose storage polymer
substrate, and therefore the name of this enzyme,
depends on the chain lengths and branching patterns. A
number of the members of this family have been shown to
operate on small maltodextrins, as may be obtained by
utilization of exogenous sources. This family represents
a distinct clade from the related family modeled by
TIGR02093/pfam00343.
Length = 601
Score = 90.9 bits (226), Expect = 1e-18
Identities = 66/283 (23%), Positives = 116/283 (40%), Gaps = 49/283 (17%)
Query: 567 MANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEK---FQNKTNGVTPRRWIRFCNP 623
M L + S NGV+++H E V+ +++ Y + E+ TNGV W P
Sbjct: 255 MTVLALRLSRIANGVSKLHGE-VSRKMWQFLYPGYEEEEVPIGYVTNGVHNPTW---VAP 310
Query: 624 DLSSILTSWLGTEDWVT--NTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTG 681
+L + +LG E+W +L E +E+L K +++ +I+ +
Sbjct: 311 ELRDLYERYLG-ENWRELLADEELWEAIDDIPDEELWE----VHLKLKARLIDYIRRRLR 365
Query: 682 YSVSPDAMFDIQVKRIHEYKRQLMN----------ILGIVYRYKKMKE----MSAVERKA 727
+ R LM +G R+ K +ER A
Sbjct: 366 ----------ERWLRRGADAAILMATDRFLDPDVLTIGFARRFATYKRADLIFRDLERLA 415
Query: 728 KFV-----PRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVS 782
+ + P +F GKA + K I++ I + PE +++F+ +Y+++
Sbjct: 416 RILNNPERPVQIVFAGKAHPADGEGKEIIQRI----VEFSKRPEFRG--RIVFLENYDIN 469
Query: 783 VAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG 825
+A L+ ++ + +EASGTS MK AMNG + + LDG
Sbjct: 470 LARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDG 512
Score = 74.3 bits (183), Expect = 2e-13
Identities = 60/266 (22%), Positives = 99/266 (37%), Gaps = 65/266 (24%)
Query: 199 GGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGN-PWEIE 257
GGLG LA L S + L P GL YK G F+QR+ +DG ++ A + + P E
Sbjct: 19 GGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKV 78
Query: 258 RNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSE 317
+ G+ +K + I G + ++W V
Sbjct: 79 LDT----------------------DGKWLKI---SVRIRGRD----VYAKVWRVQVGRV 109
Query: 318 -----DFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQ 372
D ++ + D I LY GD+ +R+ Q+ L ++
Sbjct: 110 PLYLLDTNIPENSEDDR-----------WITGRLYGGDKE-----MRIAQEIVLGIGGVR 153
Query: 373 DIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQR 432
+ A +N+ H E IR LI +GLS++EAW ++
Sbjct: 154 ALRALGIDPDV-------------YHLNEGHAAFVTLERIRELIA-QGLSFEEAWEAVRK 199
Query: 433 TVAYTNHTVLPEALEKWSFELMQKLL 458
+ +T HT +P + + +LM+K
Sbjct: 200 SSLFTTHTPVPAGHDVFPEDLMRKYF 225
>gnl|CDD|99995 cd04299, GT1_Glycogen_Phosphorylase_like, This family is most
closely related to the oligosaccharide phosphorylase
domain family and other unidentified sequences.
Oligosaccharide phosphorylase catalyzes the breakdown of
oligosaccharides into glucose-1-phosphate units. They
are important allosteric enzymes in carbohydrate
metabolism. The members of this family are found in
bacteria and Archaea.
Length = 778
Score = 70.3 bits (173), Expect = 3e-12
Identities = 69/307 (22%), Positives = 123/307 (40%), Gaps = 73/307 (23%)
Query: 555 AEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEK---FQNKTNG 611
E + P+ MA L + + NGV+ +H E V+ E+F + +P + + TNG
Sbjct: 332 RENPGDDPEPFNMAVLALRLAQRANGVSRLHGE-VSREMFAGLWPGFPVEEVPIGHVTNG 390
Query: 612 VTPRRWIRFCNPDLSSILTSWLGTED-WVTNTGKLAELRKFADNEDLQSQFRAAKRNNKM 670
V W+ P++ + +LG + +L E +E+L ++ +
Sbjct: 391 VHVPTWV---APEMRELYDRYLGGDWRERPTDPELWEAVDDIPDEELWE----VRQQLRR 443
Query: 671 KVVSFIKEKT-------GYSVSPDAMFDIQVKRIHEYKRQL-MNILGI-----VYRYKK- 716
+++ F++ + G S I E L N+L I YK+
Sbjct: 444 RLIEFVRRRLRRQWLRRGASAE----------EIGEADDVLDPNVLTIGFARRFATYKRA 493
Query: 717 --MKEMSAVERKAKFV-----PRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGD 769
+ + ER + + P IF GKA K +++ I + + PE
Sbjct: 494 TLL--LRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEF----SRRPEFRG 547
Query: 770 LLKVIFVPDYNVSVAELLIPASELSQHISTAG-----------MEASGTSNMKFAMNGCI 818
+++F+ DY++++A L+ G +EASGTS MK A+NG +
Sbjct: 548 --RIVFLEDYDMALARHLV-----------QGVDVWLNTPRRPLEASGTSGMKAALNGGL 594
Query: 819 LIGTLDG 825
+ LDG
Sbjct: 595 NLSVLDG 601
Score = 60.6 bits (148), Expect = 3e-09
Identities = 68/268 (25%), Positives = 102/268 (38%), Gaps = 72/268 (26%)
Query: 199 GGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIER 258
GGLG LA L + + L P G GL Y+ G F+QR+ DG W+ E
Sbjct: 106 GGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADG--------------WQQET 151
Query: 259 NDVSYPV-KFYG-KIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPS 316
YPV F + P D GE ++ + +PG T+ R+W V
Sbjct: 152 ----YPVNDFEQLPLEPVRDAD-----GEPVRV---SVELPGR----TVYARVWKAQVGR 195
Query: 317 E-----DFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASL 371
D D+ + D I LY GD+ R++Q+ L
Sbjct: 196 VPLYLLDTDIPENSPDDR-----------GITDRLYGGDQET-----RIQQEILLG---- 235
Query: 372 QDIIA--RFEKRSGANVNWEEFPEKVAV-QMNDTHPTLCIPELIRILIDLKGLSWKEAWN 428
I R + G K V MN+ H E IR L+ GLS+ EA
Sbjct: 236 ---IGGVRALRALG---------IKPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALE 283
Query: 429 ITQRTVAYTNHTVLPEALEKWSFELMQK 456
+ + +T HT +P +++ +L+++
Sbjct: 284 AVRASTVFTTHTPVPAGHDRFPPDLVER 311
>gnl|CDD|99959 cd01635, Glycosyltransferase_GTB_type, Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. The structures of the formed
glycoconjugates are extremely diverse, reflecting a wide
range of biological functions. The members of this
family share a common GTB topology, one of the two
protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility.
Length = 229
Score = 34.1 bits (78), Expect = 0.21
Identities = 21/151 (13%), Positives = 40/151 (26%), Gaps = 31/151 (20%)
Query: 693 QVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVK 752
V R+ K I + K + + G + +
Sbjct: 109 FVGRLAPEKGLDDLIE------------AFALLKERGPDLKLVIAGDGPEREYLEELLAA 156
Query: 753 FITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPA-SELSQHISTAGMEASGTSNMK 811
+ L +VIF+ + L+ A +++ + + E G ++
Sbjct: 157 --------------LLLLDRVIFLGGLDPEELLALLLAAADVF--VLPSLREGFGLVVLE 200
Query: 812 FAMNGCILIGTLDGANVEIRQEVGEENFFLF 842
G +I T G EI L
Sbjct: 201 AMACGLPVIATDVGGPPEI--VEDGLTGLLV 229
>gnl|CDD|177354 PHA02151, PHA02151, hypothetical protein.
Length = 217
Score = 33.4 bits (76), Expect = 0.41
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 19/84 (22%)
Query: 271 IVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHT 330
I+ G G W+ +DI +D+P P + + + W TM HT
Sbjct: 91 ILGGLTGVMDWLDNDDI---TFDVPTPDFNLEIKTSFNRWPTM---------------HT 132
Query: 331 KAAEALTNAEKIC-YILYPGDESV 353
AE A+ +C Y Y G+ V
Sbjct: 133 AGAEPYGRADGLCLYAGYKGNADV 156
>gnl|CDD|226883 COG4477, EzrA, Negative regulator of septation ring formation [Cell
division and chromosome partitioning].
Length = 570
Score = 33.1 bits (76), Expect = 0.72
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 10/103 (9%)
Query: 460 RHMEIIEMIDEELVHTIVSEYGTADPDLLEK------RLKETR-ILENVDLPATFADLFV 512
HM + I E + ++++E T P L+ +KE LE+V++ + L
Sbjct: 204 EHMIALRSIMER-IPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKE 262
Query: 513 KTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEEKEA 555
+ E+++++ EL+ +EE G + E++ES + +LE E EA
Sbjct: 263 QLVENSELLTQLELDEAEEELGLIQEKIESLYD--LLEREVEA 303
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 32.2 bits (73), Expect = 0.75
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 522 PDDELENCDEEGGPV--DEELESAQEDGVLEEEKEAEAVQEP 561
DE E+ D + V DEE ED + EE++EAE V+E
Sbjct: 17 TKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEE 58
>gnl|CDD|225188 COG2306, COG2306, Predicted RNA-binding protein, associated with
RNAses E/G family [General function prediction only].
Length = 183
Score = 31.7 bits (72), Expect = 1.1
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 486 DLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEG--GPVDEELESA 543
D+ E +E I DL + D+ +++ +DELE+ G P E
Sbjct: 91 DVGEYTPREDNIARTEDL---YLDIIALPGGEAELLDEDELEDALRYGLITPEQFEKAYR 147
Query: 544 QEDGVLEEEKEAEAVQEPPQLVRMANLCVV 573
+ V E E + PPQ + + +V
Sbjct: 148 TANAV---EAELRNGKFPPQWLATKGMELV 174
>gnl|CDD|232988 TIGR00468, pheS, phenylalanyl-tRNA synthetase, alpha subunit. Most
phenylalanyl-tRNA synthetases are heterodimeric, with 2
alpha (pheS) and 2 beta (pheT) subunits. This model
describes the alpha subunit, which shows some similarity
to class II aminoacyl-tRNA ligases. Mitochondrial
phenylalanyl-tRNA synthetase is a single polypeptide
chain, active as a monomer, and similar to this chain
rather than to the beta chain, but excluded from this
model. An interesting feature of the alignment of all
sequences captured by this model is a deep split between
non-spirochete bacterial examples and all other
examples; supporting this split is a relative deletion
of about 50 residues in the former set between two
motifs well conserved throughout the alignment [Protein
synthesis, tRNA aminoacylation].
Length = 293
Score = 31.5 bits (72), Expect = 1.9
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 20/106 (18%)
Query: 668 NKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKA 727
++ ++ + K I+E K +L + L + K E + + K
Sbjct: 7 KQLGKLTKEETKPALG-----------ALINEVKIELQDELT---KLKPELESAGLWSKL 52
Query: 728 KF------VPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEI 767
KF +P I+ G I +G T PE+
Sbjct: 53 KFETYDVSLPGTKIYPGSLHPLTRVIDEIRDIFLGLGFTEETGPEV 98
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 31.4 bits (71), Expect = 2.1
Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Query: 485 PDLLEKRLKETRILENVD----LPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEEL 540
P L++ RI E D F + V K+ DVV +E DEE E
Sbjct: 303 PLLVDLERNGNRIKELADFGDYYEDIFEVVEVVEKQEGDVV-TEEST--DEESEDEVEID 359
Query: 541 ESAQEDGVLEEEKEAEAVQE 560
ES + V E E V +
Sbjct: 360 ES-VIEEVAEMELLEVQVDD 378
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 31.3 bits (71), Expect = 2.5
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 487 LLEKRLKET--RILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQ 544
L E+R+KE + E ++ P L+V KE VPD+E E EE +E+ +
Sbjct: 3 LEERRIKELVKKHSEFINYPIY---LWV-EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKE 58
Query: 545 EDGVLEEEKEAEA 557
E+ EEEKE +
Sbjct: 59 EEVDEEEEKEEKK 71
>gnl|CDD|221279 pfam11867, DUF3387, Domain of unknown function (DUF3387). This
domain is functionally uncharacterized. This domain is
found in bacteria and archaea. This presumed domain is
typically between 255 to 340 amino acids in length. This
domain is found associated with pfam04851, pfam04313.
Length = 333
Score = 31.0 bits (71), Expect = 3.4
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 12/58 (20%)
Query: 319 FDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGK------VLRLKQQYTLCSAS 370
FD S F GD + + L A +IL G + +GK VL L + + LCS
Sbjct: 34 FDYSDFFTGDPAERLKLLLGAAN--HIL--GLD--DGKKRFLDAVLALSKAFALCSPH 85
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 30.7 bits (70), Expect = 3.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 368 SASLQDIIARFEKRSGANVNW 388
+ ++QDIIAR+++ G NV W
Sbjct: 23 NNTIQDIIARYKRMKGYNVLW 43
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP) [Protein synthesis, tRNA
aminoacylation].
Length = 851
Score = 30.8 bits (70), Expect = 3.9
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 460 RHMEIIEM---IDEELVHTIVSEYGTADPDLLEK--------RLKETRILENVDLPATFA 508
RH + + + +LV T++ G P+L EK L+E R + ++
Sbjct: 312 RHGKKLGLKEAFLYKLVPTLIEVLGDYYPELKEKQEFVEQILELEEERFAKTLERGLRLF 371
Query: 509 DLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDG 547
+ +K ++ +D + D G PV+ E A+E G
Sbjct: 372 EKLLKKLGKKELDGEDAFKLYDTYGFPVELTKEIAEERG 410
>gnl|CDD|224181 COG1261, FlgA, Flagellar basal body P-ring biosynthesis protein
[Cell motility and secretion / Posttranslational
modification, protein turnover, chaperones].
Length = 220
Score = 30.0 bits (68), Expect = 4.8
Identities = 24/146 (16%), Positives = 41/146 (28%), Gaps = 12/146 (8%)
Query: 285 EDIKAVAYDIPIPGYKTKTTINLRLWST-MVPSEDFDLSAFNAGDHTKAAEALTNAEKIC 343
I P Y + N R+W V + +L F E + A I
Sbjct: 46 LIITERNLLAPCDQYLLTASNNARVWGNVNVLASCSNLPRFVRVAVQAPGEVVVAARTI- 104
Query: 344 YILYPGD-------ESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVA 396
Y G+ + G + L Y L + +++ G + +
Sbjct: 105 ---YRGEKISAADVKLKRGDLDALPPGYVLDPDEVVGKVSKRTLLPGQPILASMLRQAWL 161
Query: 397 VQMNDTHPTLCIPELIRILIDLKGLS 422
V+ + I I + K L
Sbjct: 162 VKRGQIVTVVAEGGGISITAEGKALE 187
>gnl|CDD|223190 COG0112, GlyA, Glycine/serine hydroxymethyltransferase [Amino acid
transport and metabolism].
Length = 413
Score = 30.3 bits (69), Expect = 5.4
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 720 MSAVERKAKFV-PRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 764
VE+ AK V P++ I GG A++ + KR + +VGA + D
Sbjct: 155 YDEVEKLAKEVKPKLIIAGGSAYSRPIDFKRFREIADEVGAYLMVD 200
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 30.0 bits (68), Expect = 6.8
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 488 LEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELEN-CDEEGGPVDEELESAQED 546
+ K LKE R+ E +P +L K DV +EL+ E+ PV E + +E+
Sbjct: 355 MPKELKE-RVKE--FIPE---ELRDKIATEEDVKDIEELKKFLKEKEHPVVERWAAEEEE 408
Query: 547 GVLEEEKEAEAVQEPPQLVRMANL 570
EEE+E E ++ +
Sbjct: 409 EEEEEEEEEEEPVAEVMMMPAPEM 432
>gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs.
CDP-tyvelose 2-epimerase is a tetrameric SDR that
catalyzes the conversion of CDP-D-paratose to
CDP-D-tyvelose, the last step in tyvelose biosynthesis.
This subgroup is a member of the extended SDR subfamily,
with a characteristic active site tetrad and NAD-binding
motif. Extended SDRs are distinct from classical SDRs.
In addition to the Rossmann fold (alpha/beta folding
pattern with a central beta-sheet) core region typical
of all SDRs, extended SDRs have a less conserved
C-terminal extension of approximately 100 amino acids.
Extended SDRs are a diverse collection of proteins, and
include isomerases, epimerases, oxidoreductases, and
lyases; they typically have a TGXXGXXG cofactor binding
motif. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold, an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Sequence identity between different
SDR enzymes is typically in the 15-30% range; they
catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid synthase
have a GGXGXXG NAD(P)-binding motif and an altered
active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 337
Score = 30.0 bits (68), Expect = 6.9
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 23/63 (36%)
Query: 908 DFPSYLECQEKVDEAYCDQKRWTR-------------MSIMNTA---GSSKFSSDRTIQE 951
D P+YL +E + R+ + + G+SK ++D+ +QE
Sbjct: 131 DLPNYLPLEE-------LETRYELAPEGWSPAGISESFPLDFSHSLYGASKGAADQYVQE 183
Query: 952 YAR 954
Y R
Sbjct: 184 YGR 186
>gnl|CDD|224420 COG1503, eRF1, Peptide chain release factor 1 (eRF1) [Translation,
ribosomal structure and biogenesis].
Length = 411
Score = 29.6 bits (67), Expect = 7.9
Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 19/133 (14%)
Query: 434 VAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELV-HTIVSEYGTADPDLLEKRL 492
V+YT + L E +EK L R +++E +EL + ++ YG E+ +
Sbjct: 251 VSYTGESGLRELIEKAEDALKDVDYVREKKLMEEFFKELAKDSGLAVYG-------EEEV 303
Query: 493 KETRILENVDLPATFADL---------FVKTKESTDVVPDDELE--NCDEEGGPVDEELE 541
+E + VD DL E+ + E + C E G ++E
Sbjct: 304 REALEMGAVDTLLVSEDLEKERVTYKCPTCGYENLKSKREFEQKRFRCPECGSEMEEVEV 363
Query: 542 SAQEDGVLEEEKE 554
S D + E +E
Sbjct: 364 SDLVDELAELAEE 376
>gnl|CDD|184308 PRK13761, PRK13761, hypothetical protein; Provisional.
Length = 248
Score = 29.4 bits (67), Expect = 8.0
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 407 CIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALE 447
+P + +LK +E I + Y N L EAL+
Sbjct: 200 AVPNMTEYARELKKKDREELEEIVEN---YDNKKNLSEALK 237
>gnl|CDD|232846 TIGR00153, TIGR00153, TIGR00153 family protein. An apparent
homolog with a suggested function is Pit accessory
protein from Sinorhizobium meliloti, which may be
involved in phosphate (Pi) transport [Hypothetical
proteins, Conserved].
Length = 216
Score = 29.3 bits (66), Expect = 8.9
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 624 DLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRA-AKRNNKM-----KVVSFIK 677
DL + D + + L ELRKF E+L+ +F K M +VV I+
Sbjct: 82 DLLELAELLDEILDSLEHAAMLYELRKFEFPEELRDEFLLVLKITVDMIQHLHRVVEVIE 141
Query: 678 EKTGYSVSPDAMFDIQV--KRIHEYKRQLMNILGIVYRY 714
+T S++ D + +I+ I + ++ L +
Sbjct: 142 LETDLSLANDIIKEIKDLEDEIDVMQIRIYKKLYNLEVS 180
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase.
Length = 379
Score = 29.4 bits (66), Expect = 9.0
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 554 EAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVT 613
+A ++ E +L+ MAN GS ++NG H +E N + F N T G T
Sbjct: 235 DARSLYENCRLISMANPVPPGSKSINGAVTAHGRTSKDE--NTGF-----SFVNCTIGGT 287
Query: 614 PRRWI 618
R W+
Sbjct: 288 GRIWL 292
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 29.9 bits (67), Expect = 9.1
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 522 PDDELENCDEEGGPVDEELESAQE---DGVLEEEKEAEAVQEPPQLVRM 567
D+E E E +EE+E + E DG EE E + RM
Sbjct: 468 EDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRM 516
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 29.6 bits (67), Expect = 9.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 370 SLQDIIARFEKRSGANVNW 388
S+QDIIAR+++ G NV W
Sbjct: 57 SIQDIIARYKRMKGYNVLW 75
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 30.0 bits (67), Expect = 10.0
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 469 DEELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELEN 528
DEE + V PD+ E + E++DLP DL + KE DV D +LE+
Sbjct: 3955 DEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPE---DLKLDEKEG-DVSKDSDLED 4010
Query: 529 CDEEGGPVDEELESAQEDGVLEEEKEAE 556
D E ++E A++D +++E E
Sbjct: 4011 MDMEAADENKEEADAEKDEPMQDEDPLE 4038
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.390
Gapped
Lambda K H
0.267 0.0802 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 49,591,033
Number of extensions: 4969904
Number of successful extensions: 4577
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4516
Number of HSP's successfully gapped: 58
Length of query: 965
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 859
Effective length of database: 6,236,078
Effective search space: 5356791002
Effective search space used: 5356791002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (28.3 bits)