RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 002111
(965 letters)
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form,
glycosyltransferase; HET: PLP; 2.80A {Saccharomyces
cerevisiae} SCOP: c.87.1.4
Length = 879
Score = 1242 bits (3217), Expect = 0.0
Identities = 393/925 (42%), Positives = 528/925 (57%), Gaps = 110/925 (11%)
Query: 75 EEDTSSSQNSSGPDTASVASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNS 134
+ Q H E T S + A+ A + S+RD+L+I+WN
Sbjct: 27 RALWNKHQVKKFNKAEDFQDRFIDHVETTLARSLYNCDDMVAYEAASMSIRDNLVIDWNK 86
Query: 135 TYEYYERLNVKQAYYLSMEFLQGRALLNAIGNLGLTGA-------------YAEALSKLG 181
T + + + K+ YYLS+EFL GRAL NA+ N+ + AL +LG
Sbjct: 87 TQQKFTTRDPKRVYYLSLEFLMGRALDNALINMKIEDPEDPAASKGKPREMIKGALDELG 146
Query: 182 QSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDG-Q 240
LE+V+ QEPDA LGNGGLGRLA+CF+DSMAT PAWGYGLRY+YG+F Q+I DG Q
Sbjct: 147 FKLEDVLDQEPDAGLGNGGLGRLAACFVDSMATEGIPAWGYGLRYEYGIFAQKI-IDGYQ 205
Query: 241 EEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSDGK-----SHWIGGEDIKAVAYDIP 295
E + WL GNPWEIERN+V PV FYG + GK S WIGGE + AVAYD P
Sbjct: 206 VETPDYWLNSGNPWEIERNEVQIPVTFYGYVDRPEGGKTTLSASQWIGGERVLAVAYDFP 265
Query: 296 IPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEG 355
+PG+KT NLRLW P+ +FDL+ FN GD+ + AE I +LYP D +G
Sbjct: 266 VPGFKTSNVNNLRLWQAR-PTTEFDLNKFNNGDYKNSVAQQQRAESITAVLYPNDNFAQG 324
Query: 356 KVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRIL 415
K LRLKQQY C+ASL DI+ RF+K W EFP++VA+Q+NDTHPTL I EL R+L
Sbjct: 325 KELRLKQQYFWCAASLHDILRRFKKSKR---PWTEFPDQVAIQLNDTHPTLAIVELQRVL 381
Query: 416 IDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHT 475
+DL+ L W EAW+I +T AYTNHTV+ EALEKW L LLPRH+EII I+ +
Sbjct: 382 VDLEKLDWHEAWDIVTKTFAYTNHTVMQEALEKWPRRLFGHLLPRHLEIIYDINWFFLED 441
Query: 476 IVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGP 535
+ ++ D D L I+ EE P
Sbjct: 442 VAKKFP-KDVD----LLSRISII--------------------------------EENSP 464
Query: 536 VDEELESAQEDGVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFN 595
+ +RMA L +VGSH VNGV E+HSE++ +F
Sbjct: 465 --------------------------ERQIRMAFLAIVGSHKVNGVVELHSELIKTTIFK 498
Query: 596 EFYKLW-PEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLG--TEDWVTNTGKLAELRKFA 652
+F K + P KF N TNG+TPRRW++ NP L+ +++ L TE+++ + KL +L K+
Sbjct: 499 DFIKFYGPSKFVNVTNGITPRRWLKQANPSLAKLISETLNDPTEEYLLDMAKLTQLEKYV 558
Query: 653 DNEDLQSQFRAAKRNNKMKVVSFIKEKT------GYSVSPDAMFDIQVKRIHEYKRQLMN 706
++++ ++ K NNK+++V IK++ D +FD+QVKRIHEYKRQ +N
Sbjct: 559 EDKEFLKKWNQVKLNNKIRLVDLIKKENDGVDIINREYLDDTLFDMQVKRIHEYKRQQLN 618
Query: 707 ILGIVYRYKKMKEM-----SAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATV 761
+ GI+YRY MK M S E K+ +V IFGGK+ Y AK I+K I V V
Sbjct: 619 VFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADIV 678
Query: 762 NHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIG 821
N+D I LLKV+FV DYNVS AE++IPAS+LS+HISTAG EASGTSNMKF MNG ++IG
Sbjct: 679 NNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIG 738
Query: 822 TLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGS 881
T+DGANVEI +E+GE+N FLFG + + LR + + V +++SG F
Sbjct: 739 TVDGANVEITREIGEDNVFLFGNLSENVEELRYNHQYHPQDLPSSLDSVLSYIESGQFSP 798
Query: 882 YN---YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQK-RWTRMSIMNT 937
N + L+ S++ + DY+LV DF SYL E VD+ + +Q+ W + S+++
Sbjct: 799 ENPNEFKPLVDSIKYH-----GDYYLVSDDFESYLATHELVDQEFHNQRSEWLKKSVLSL 853
Query: 938 AGSSKFSSDRTIQEYARDIWNIIPV 962
A FSSDR I+EY+ IWN+ PV
Sbjct: 854 ANVGFFSSDRCIEEYSDTIWNVEPV 878
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence,
starch degrading, transferase, glycosyltransferase; HET:
PLP; 1.9A {Corynebacterium callunae}
Length = 796
Score = 679 bits (1756), Expect = 0.0
Identities = 177/403 (43%), Positives = 252/403 (62%), Gaps = 9/403 (2%)
Query: 565 VRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPD 624
V MA + ++++NGVA +H+EI+ E ++Y LWPEKF NKTNGVTPRRW+R NP
Sbjct: 393 VHMAWIACYAAYSINGVAALHTEIIKAETLADWYALWPEKFNNKTNGVTPRRWLRMINPG 452
Query: 625 LSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSV 684
LS +LT G++DWVT+ +L +LR +AD++ + + RA K NK +I E+ G +
Sbjct: 453 LSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLEELRAIKAANKQDFAEWILERQGIEI 512
Query: 685 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY 744
P+++FD+Q+KR+HEYKRQLMN L ++ Y ++KE + R IFG KA Y
Sbjct: 513 DPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKE----DGLTDIPARTVIFGAKAAPGY 568
Query: 745 VQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEA 804
V+AK I+K I + VN+DPE+ LLKV+FV +YNVS AE ++PAS++S+ ISTAG EA
Sbjct: 569 VRAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEA 628
Query: 805 SGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE-RSEGKFVP 863
SGTSNMKF MNG + +GT+DGANVEI VGEEN ++FGAR E+ LR+ + +
Sbjct: 629 SGTSNMKFMMNGALTLGTMDGANVEIVDSVGEENAYIFGARVEELPALRESYKPYELYET 688
Query: 864 DARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVD 920
+ + +G N + +L SL G +D + V DF Y E ++++
Sbjct: 689 VPGLKRALDALDNGTLNDNNSGLFYDLKHSLIHGYGKDASDTYYVLGDFADYRETRDRMA 748
Query: 921 EAYC-DQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPV 962
Y D W RM+ +N S +FSSDRTI++YA +IW + P
Sbjct: 749 ADYASDPLGWARMAWINICESGRFSSDRTIRDYATEIWKLEPT 791
Score = 588 bits (1518), Expect = 0.0
Identities = 155/408 (37%), Positives = 212/408 (51%), Gaps = 27/408 (6%)
Query: 93 ASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQAYYLSM 152
A+ + H + K + +++V++ + +W T E Y +Q +Y S
Sbjct: 10 AALVGSHVRAAAGTPADLATDRKFWTGLSRAVQERIADDWERTREAYG--AARQQHYFSA 67
Query: 153 EFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSM 212
EFL GRALLN + NLGL A A +LG L +++ E DAALGNGGLGRLA+CFLDS
Sbjct: 68 EFLMGRALLNNLTNLGLVDEAAAATRELGHELTDILEIENDAALGNGGLGRLAACFLDSA 127
Query: 213 ATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIV 272
T +YP GYGL Y++GLF+Q + Q E + W E P+ I R V F
Sbjct: 128 VTQDYPVTGYGLLYRFGLFRQSFNEGFQVEKPDPWREEEYPFTIRRASDQLVVCF----- 182
Query: 273 PGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKA 332
+A+ YD+PI GY T LRLW P E+FD AFNA T A
Sbjct: 183 ----------DDMKTRAIPYDMPITGYGTHNVGTLRLWKAE-PWEEFDYDAFNAQRFTDA 231
Query: 333 AEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFP 392
IC +LYP D + EGK LR++QQY SASLQ +I + F
Sbjct: 232 IIERERVSDICRVLYPNDTTYEGKKLRVRQQYFFTSASLQAMIQDHLAHHK---DLSNFA 288
Query: 393 EKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFE 452
E +VQ+NDTHP L IPEL+R+L+D + W+E+W I +T AYTNHTVL EALE+W +
Sbjct: 289 EFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQWDEQ 348
Query: 453 LMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLKETRILEN 500
+ Q+L R EII ID ++ D + + + +++
Sbjct: 349 IFQQLFWRVWEIIAEIDRRFRLERAADGL--DEETINR----MAPIQH 390
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH;
1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB:
2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A*
3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A*
1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Length = 824
Score = 679 bits (1754), Expect = 0.0
Identities = 180/412 (43%), Positives = 263/412 (63%), Gaps = 18/412 (4%)
Query: 561 PPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRF 620
+ + MA+LC+ GSHAVNGVA IHSEI+ +F +FY+L P KFQNKTNG+TPRRW+
Sbjct: 424 AVKRINMAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVL 483
Query: 621 CNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKT 680
CNP L+ I+ +G E+++++ +L +L + D+E K+ NK+K ++++ +
Sbjct: 484 CNPGLAEIIAERIG-EEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREY 542
Query: 681 GYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKA 740
++P+++FD+QVKRIHEYKRQL+N L ++ Y ++K+ E VPR + GGKA
Sbjct: 543 KVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKK----EPNKFVVPRTVMIGGKA 598
Query: 741 FATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTA 800
Y AK I+K IT +G VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTA
Sbjct: 599 APGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTA 658
Query: 801 GMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSE 858
G EASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R ++ L + ++
Sbjct: 659 GTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQ 718
Query: 859 GKFVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFPSYLEC 915
+ ++ + + SG F + +++ L + D F V D+ Y++C
Sbjct: 719 EYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHH------DRFKVFADYEEYVKC 772
Query: 916 QEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI--IPVELP 965
QE+V Y + + WTRM I N A S KFSSDRTI +YAR+IW + LP
Sbjct: 773 QERVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLP 824
Score = 616 bits (1592), Expect = 0.0
Identities = 181/408 (44%), Positives = 252/408 (61%), Gaps = 8/408 (1%)
Query: 88 DTASVASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQA 147
+ + + H FT + P +FA A +VRD L+ W T ++Y + K+
Sbjct: 12 NVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRI 71
Query: 148 YYLSMEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASC 207
YYLS+EF GR L N + NL L A EA +LG +E + E DA LGNGGLGRLA+C
Sbjct: 72 YYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAAC 131
Query: 208 FLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKF 267
FLDSMATL A+GYG+RY++G+F Q+I Q E A+DWL GNPWE R + + PV F
Sbjct: 132 FLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHF 191
Query: 268 YGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAG 327
YG++ S G + W+ + + A+ YD P+PGY+ +RLWS DF+L FN G
Sbjct: 192 YGRVEHTSQG-AKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFNVG 249
Query: 328 DHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANV- 386
+ +A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+
Sbjct: 250 GYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRD 309
Query: 387 ----NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVL 442
N++ FP+KVA+Q+NDTHP+L IPEL+R+L+DL+ L W +AW +T +T AYTNHTVL
Sbjct: 310 PVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVL 369
Query: 443 PEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEK 490
PEALE+W L++ LLPRH++II I++ ++ + + + D D L +
Sbjct: 370 PEALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFP-GDVDRLRR 416
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex,
trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP:
c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A*
2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Length = 796
Score = 667 bits (1724), Expect = 0.0
Identities = 184/400 (46%), Positives = 264/400 (66%), Gaps = 14/400 (3%)
Query: 565 VRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPD 624
V MANLCVVG AVNGVA +HS++V ++F E+++LWP KF N TNG+TPRRWI+ CNP
Sbjct: 404 VHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPA 463
Query: 625 LSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSV 684
L+++L L ++W + +L L KFAD+ + Q+R K+ NK+++ F+K +TG +
Sbjct: 464 LAALLDKSLQ-KEWANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEI 522
Query: 685 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY 744
+P A+FDIQ+KR+HEYKRQ +N+L I+ YK+++E +A VPRV +FG KA Y
Sbjct: 523 NPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENP----QADRVPRVFLFGAKAAPGY 578
Query: 745 VQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEA 804
AK I+ I V +N+DP +GD LKV+F+PDY VS AE LIPA+++S+ ISTAG EA
Sbjct: 579 YLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEA 638
Query: 805 SGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSEGKFV 862
SGT NMK A+NG + +GTLDGANVEI ++VGEEN F+FG ++ + +
Sbjct: 639 SGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRK 698
Query: 863 PDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKV 919
D + V K ++SG + + +D+++ S+ G D +LV DF +Y+E Q++V
Sbjct: 699 KDKVLDAVLKELESGKYSDGDKHAFDQMLHSI----GKQGGDPYLVMADFAAYVEAQKQV 754
Query: 920 DEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 959
D Y DQ+ WTR +I+NTA FSSDR+I++Y IW
Sbjct: 755 DVLYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIWQA 794
Score = 596 bits (1538), Expect = 0.0
Identities = 151/413 (36%), Positives = 219/413 (53%), Gaps = 17/413 (4%)
Query: 88 DTASVASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQA 147
+ ++ + L S + P + + A ++++ + L + N +
Sbjct: 6 NDKQFQEALSRQWQRYGLNSAAEMTPRQWWLAVSEALAEMLRAQPFAKPVA----NQRHV 61
Query: 148 YYLSMEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASC 207
Y+SMEFL GR N + NLG ++L +L +++ +E D ALGNGGLGRLA+C
Sbjct: 62 NYISMEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAAC 121
Query: 208 FLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKF 267
FLDSMAT+ A GYGL Y+YGLF+Q Q E +DW PW + V
Sbjct: 122 FLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGI 181
Query: 268 YGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAG 327
GK+ DG+ W I A+D+P+ GY+ LRLW + FDL+ FN G
Sbjct: 182 GGKVTK--DGR--WEPEFTITGQAWDLPVVGYRNGVAQPLRLWQAT-HAHPFDLTKFNDG 236
Query: 328 DHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVN 387
D +A + NAEK+ +LYP D + EGK LRL QQY C+ S+ DI+ R
Sbjct: 237 DFLRAEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHHLAGR---K 293
Query: 388 WEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALE 447
E + +Q+NDTHPT+ IPEL+R+LID +SW +AW IT +T AYTNHT++PEALE
Sbjct: 294 LHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALE 353
Query: 448 KWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLKETRILEN 500
+W +L++ LLPRHM+II I+ + + D + K ++ +
Sbjct: 354 RWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWP-GDEKVWAK----LAVVHD 401
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.3 bits (171), Expect = 2e-12
Identities = 93/683 (13%), Positives = 197/683 (28%), Gaps = 216/683 (31%)
Query: 175 EALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQR 234
LSK + +++++ DA G RL L + LR Y
Sbjct: 44 SILSK--EEIDHII-MSKDAVSG---TLRLFWTLLSKQEEMVQKFVEEVLRINYK----- 92
Query: 235 ITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDI 294
+L +P + E+ S + Y + + + A Y++
Sbjct: 93 ------------FLM--SPIKTEQRQPSMMTRMY------IEQRDRLYNDNQVFA-KYNV 131
Query: 295 PIPGYKTKTTINLRLW-STMVPSEDFDLSA-FNAGDHTKAAEALTNAE-------KICYI 345
+ + LR + P+++ + +G A + + + KI ++
Sbjct: 132 SRL----QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 346 LYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDT-HP 404
S E L+ L + +R + S + ++ + +
Sbjct: 188 NLKNCNSPE---TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 405 TLCIPELIRILIDLKGLSW-KEAWN---------ITQR--------TVAYTNHTVL---- 442
C L+ +L+++ +AWN +T R + A T H L
Sbjct: 245 N-C---LL-VLLNV----QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 443 -----PEALE---KW----SFEL---MQKLLPRHMEII-----EMID----------EEL 472
E K+ +L + PR + II + + ++L
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 473 VHTIVSEYGTADPDLLEKRLKETRIL-ENVDLPATFADLFVKTKESTDVVPDDELENCDE 531
I S +P K + + +P ++ D +++
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-------ILLS---LIWFDVIKSDVM 405
Query: 532 EGGPVDEELESAQEDGVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTN 591
V +L ++E+ Q + + ++ + + +H IV
Sbjct: 406 V---VVNKLHKY---SLVEK-------QPKESTISIPSIYLELKVKLENEYALHRSIV-- 450
Query: 592 EVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLG-----TEDWVTNTGKLA 646
+ Y + P+ F + + + P P L S +G E + ++
Sbjct: 451 ----DHYNI-PKTFDS--DDLIP--------PYLDQYFYSHIGHHLKNIE----HPERMT 491
Query: 647 ELRK-FADNEDLQSQFRAAKRNNKMKVVSFIKEK---TGYSVSPDAMFDIQVKRIHEYKR 702
R F D FR F+++K + +
Sbjct: 492 LFRMVFLD-------FR------------FLEQKIRHDSTAWNASG-------------- 518
Query: 703 QLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVN 762
++N L + YK ++ + V A I+ F+ + +
Sbjct: 519 SILNTLQQLKFYK------------PYICDND----PKYERLVNA--ILDFLPKIEENLI 560
Query: 763 HDPEIGDLLKVIFVPDYNVSVAE 785
DLL++ + + E
Sbjct: 561 CSKYT-DLLRIALMAEDEAIFEE 582
Score = 67.2 bits (163), Expect = 2e-11
Identities = 85/694 (12%), Positives = 190/694 (27%), Gaps = 260/694 (37%)
Query: 224 LRYKYG----LFKQRITKDGQEEVAEDWLE-----------LGNPWEIERNDV------S 262
+Y+Y +F+ + + +D + + + + S
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 263 YPVKFYGKIVPGSDGKSH-WIGGEDIKAVAYDIPIPGYKTKTTINLR--LWSTMVPSEDF 319
+ K V ++ ++ + + + P T+ I R L++ +
Sbjct: 74 KQEEMVQKFVEEVLRINYKFL----MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 320 DLSAFNAGDHTKAAEALTNAEKICYILYPG---------------DESVE----GKV--- 357
++S + K +AL +L G V+ K+
Sbjct: 130 NVSRLQ--PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 358 ---------LRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDT-HPTLC 407
L+ L + +R + S + ++ + + C
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-C 246
Query: 408 IPELIRILIDLKGLSW-KEAWN---------ITQR--------TVAYTNHTVL------- 442
L+ +L+++ +AWN +T R + A T H L
Sbjct: 247 ---LL-VLLNV----QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 443 --PEALE---KW----SFEL---MQKLLPRHMEII-----EMID----------EELVHT 475
E K+ +L + PR + II + + ++L
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 476 IVSEYGTADPDLLEKRLKETRIL-ENVDLPATFADLFVKTKESTDVVPDDELENCDEEGG 534
I S +P K + + +P ++ D +++
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-------ILLS---LIWFDVIKSDVMV-- 406
Query: 535 PVDEELESAQEDGVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVF 594
V +L ++E+ Q + + ++ + + +H IV
Sbjct: 407 -VVNKLHKY---SLVEK-------QPKESTISIPSIYLELKVKLENEYALHRSIV----- 450
Query: 595 NEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLG-----TEDWVTNTGKLAELR 649
+ Y + P+ F + + + P P L S +G E + ++ R
Sbjct: 451 -DHYNI-PKTFDS--DDLIP--------PYLDQYFYSHIGHHLKNIE----HPERMTLFR 494
Query: 650 K-FADNEDLQSQFRAAKRNNKMKVVSFIKEK---TGYSVSPDAMFDIQVKRIHEYKRQLM 705
F D FR F+++K + + ++
Sbjct: 495 MVFLD-------FR------------FLEQKIRHDSTAWNASG--------------SIL 521
Query: 706 NILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 765
N L + YK +I D +DP
Sbjct: 522 NTLQQLKFYK------------------------------------PYICD------NDP 539
Query: 766 E----IGDLLKVIFVPDYNVSVAELLIPASELSQ 795
+ + +L F+P ++ + ++L +
Sbjct: 540 KYERLVNAILD--FLPKIEENL--ICSKYTDLLR 569
Score = 57.9 bits (139), Expect = 1e-08
Identities = 69/518 (13%), Positives = 152/518 (29%), Gaps = 149/518 (28%)
Query: 89 TASVASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVR--DSLIINWNSTY-----EYYER 141
V S + + K F+ ++ ++++ + R
Sbjct: 167 ALDVCLSYKVQCKM----------DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 142 LNVKQAYYLSMEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGL 201
+ L + +Q + L + Y L L L NV + + A
Sbjct: 217 SDHSSNIKLRIHSIQAE-----LRRLLKSKPYENCL--L--VLLNVQNAKAWNAFNLS-- 265
Query: 202 GRLASC-------------FLDSMAT----LNYPAWGYGLRYKYGLFKQRITKDGQEEVA 244
C FL + T L++ + L + + Q+
Sbjct: 266 -----CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 245 EDWLELGNPWEIERNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTT 304
E + NP + + + DG + W ++ K V D K T
Sbjct: 321 E--VLTTNPRRL---------SIIAESI--RDGLATW---DNWKHVNCD------KLTTI 358
Query: 305 INLRLWSTMVPSED----FDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRL 360
I L + + P+E LS F L + +++ +
Sbjct: 359 IESSL-NVLEPAEYRKMFDRLSVFP--PSAHIPTIL-----LS-LIWFDVIKSD------ 403
Query: 361 KQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIP-----ELIRIL 415
+ ++ + K S +E + + + L + L R +
Sbjct: 404 ----------VMVVVNKLHKYSLVEKQPKES----TISIPSIYLELKVKLENEYALHRSI 449
Query: 416 IDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHT 475
+D +NI + + + ++P L+++ + + H++ IE + +
Sbjct: 450 VD--------HYNIPK---TFDSDDLIPPYLDQYFYS----HIGHHLKNIEHPERMTLFR 494
Query: 476 IVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGP 535
+V + D LE++++ N + + + K + D++ P
Sbjct: 495 MV--F--LDFRFLEQKIRHDSTAWNA--SGSILNTLQQLKFYKPYICDND---------P 539
Query: 536 VDEELESAQEDGVLEEEKEAEAVQEPPQLVRMANLCVV 573
E L +A D + + E L+ ++
Sbjct: 540 KYERLVNAILDFLPKIE---------ENLICSKYTDLL 568
Score = 47.5 bits (112), Expect = 2e-05
Identities = 56/477 (11%), Positives = 132/477 (27%), Gaps = 142/477 (29%)
Query: 4 SQFSSMSTRPSEALVQCTSSLSRFIEFGSRNRTSKQKLLLIRTFNSRPPTTSFCIKCVSS 63
+ S S+ + + L R + +++ + LL++ + +F + C
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLL----KSKPYENCLLVLLNVQNAKAWNAFNLSC--- 266
Query: 64 QPSPKTKDRVTEEDTSSSQNSSGPDTASVASSIQYHAEFTP-----LFS-----PEKFEP 113
K +T + + T + S + TP L + P
Sbjct: 267 ----KI--LLTTRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 114 PKAFFATAQSVRDSLI----INWNSTYEYYERLNVKQAYYLSMEFLQGRALLNAIGNLGL 169
+ + + S+I + +T++ ++ +N + L I +
Sbjct: 320 REVLTTNPRRL--SIIAESIRDGLATWDNWKHVNCDK-------------LTTIIES--- 361
Query: 170 TGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATL----NYPA------ 219
SL EP F ++ + P
Sbjct: 362 -------------SLNV---LEPA---------EYRKMFDR-LSVFPPSAHIPTILLSLI 395
Query: 220 WGYGLRYKYGLFKQRITKDGQEEVAEDWL-ELGNPWEIERNDVSYPVKFYG-----KIVP 273
W D + + +L +E+ + K+
Sbjct: 396 WF----------------DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 274 GSDGKSHWIGGEDIKAV-AYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKA 332
++ H V Y+IP + P D + G H K
Sbjct: 440 ENEYALH------RSIVDHYNIP---------KTFDSDDLIPPYLD-QYFYSHIGHHLKN 483
Query: 333 AEALTNAEKICYI--LYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEE 390
E + E++ ++ +E K +R S S+ + + + + ++
Sbjct: 484 IE---HPERMTLFRMVFLDFRFLEQK-IRHDSTAWNASGSILNTLQQLKF-------YKP 532
Query: 391 FPEKVAVQMNDTHPTLCIPELIRILIDLKG--LSWKEAWNITQRTVAYTNHTVLPEA 445
+ + ND + ++ L ++ + K ++ + + + + EA
Sbjct: 533 Y-----ICDNDPKYERLVNAILDFLPKIEENLICSKYT-DLLRIALMAEDEAIFEEA 583
Score = 39.1 bits (90), Expect = 0.009
Identities = 61/484 (12%), Positives = 124/484 (25%), Gaps = 146/484 (30%)
Query: 578 VNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRR--WIRFCNPDLSSILTSWLGT 635
V ++ I++ E + ++ +G R W ++ ++
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMS-----KDAVSGT--LRLFWTLLSKQ--EEMVQKFVEE 85
Query: 636 EDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVK 695
LR + + L S + +R M +I+++ V
Sbjct: 86 V-----------LRI--NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 696 RIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFG----GK---AFATYVQAK 748
R+ Y +L L + + V I G GK A + K
Sbjct: 133 RLQPYL-KLRQAL----------------LELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 749 RIVKFITDVG-ATVNHDPEIGDLLKVI------FVPDYNV---SVAELLIPASELSQHIS 798
K + + + +L+++ P++ + + + + +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 799 TAGMEASGT---------SNMKF--AMN-GC-ILIGTLDGANVEIRQEVGEENFFLFGAR 845
N K A N C IL+ T + + L
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL---- 291
Query: 846 AHEIAGLRKERSEGKFVPDARF---------EEVKK-----------FVKSGV-----FG 880
H L + + ++ EV ++ G+ +
Sbjct: 292 DHHSMTLTPDEVKSLL---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 881 SYNYDELM----GSLEGNEGFGQADYFLVGKD---FP-----------------SYLECQ 916
N D+L SL E F FP +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMF---DRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 917 EKVDE--AYCDQKRW---TRMSIMNTAGSSKFSSD-------RTIQEY----ARDIWNII 960
V++ Y ++ + +SI + K + + Y D ++I
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 961 PVEL 964
P L
Sbjct: 466 PPYL 469
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.9 bits (116), Expect = 9e-06
Identities = 84/575 (14%), Positives = 151/575 (26%), Gaps = 206/575 (35%)
Query: 5 QFSSMSTRPSEALVQC--TSS----LSRFIEFGSR-----NRTSKQKLL--LIRTFNSRP 51
QF+ + P+E ++ + +F+ + S ++L + F +
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95
Query: 52 PTT----SFCIKCVSSQPSPKTKDR------VTEEDTSSSQNSSGPDTASVASSIQYHAE 101
+ K + + K + +T + ++A + + +A+
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 102 FTPLF----SPEK-FE---------PP--KAFFATAQSVRDSLIINWNSTYEYYER-LNV 144
+F + + FE + LI + + + LN+
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 145 KQ----------AYYL-----SM------EFLQGRALLNAIG----NL-----GLTG--- 171
+ YL S + +G L G TG
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 172 ----AYAEALSKLGQS-LENVV------------SQE--PDAAL--------GNGGLGRL 204
A A A + +S +V E P+ +L G +
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG-V 334
Query: 205 ASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELG--N-PWEIERNDV 261
S M +++ L + + + K A +E+ N +N V
Sbjct: 335 PSP----MLSIS------NLTQE-QVQD-YVNKTNSHLPAGKQVEISLVNGA----KNLV 378
Query: 262 --SYPVKFYG--------KIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWS 311
P YG K G D +S IP + K + R
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLD-QSR---------------IPFSERKLKFSNRFLP 422
Query: 312 TMVPSEDFDLSAFNAGDHTKAAEALTNA-EKICYILYPGDESVEGKVLR----------- 359
P F H+ L A + I L + S K ++
Sbjct: 423 VASP--------F----HS---HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Query: 360 LKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRILIDL- 418
L+ S + D I R V WE Q TH ++D
Sbjct: 468 LRVLSGSISERIVDCIIR------LPVKWET-----TTQFKATH-----------ILDFG 505
Query: 419 ----KGLSWKEAWNITQRTVAYTN-HTVLPEALEK 448
GL +T R T ++ L+
Sbjct: 506 PGGASGLG-----VLTHRNKDGTGVRVIVAGTLDI 535
Score = 45.8 bits (108), Expect = 7e-05
Identities = 61/337 (18%), Positives = 101/337 (29%), Gaps = 120/337 (35%)
Query: 721 SAVERKAKFVPRVCIFGG------------KAFATY---VQ------AKRIVKFITDVGA 759
+ E A+ V IFGG + TY V A+ + + I
Sbjct: 148 AVGEGNAQLVA---IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 760 TVNHDPEIGDLLKVIFVP------DYNVSVAELLIPASELSQ--HISTAGMEASGTS--N 809
+ ++L+ + P DY +S+ + P + Q H + G +
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIP-ISCPLIGVIQLAHYVVTA-KLLGFTPGE 262
Query: 810 MKFAMNGCILIGTLDG--ANVEIRQEVGEENFF---------LF--GARAHEIAGLR--- 853
++ + G G G V I + E+FF LF G R +E
Sbjct: 263 LRSYLKG--ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 854 -------KERSEGKFVP-------DARFEEVKKFVKSGVFGSYNYDELMGSLEGNE---- 895
E +EG VP + E+V+ +V ++ L +
Sbjct: 321 PSILEDSLENNEG--VPSPMLSISNLTQEQVQDYV----------NKTNSHLPAGKQVEI 368
Query: 896 ----GFGQADYFLV-GKDFPSYLE--CQ--EKVD-EAYCDQKRWTRMSIMNTAGSSKF-- 943
G A +V G P L K + DQ R S S++F
Sbjct: 369 SLVNG---AKNLVVSG--PPQSLYGLNLTLRKAKAPSGLDQSR-IPFSERKLKFSNRFLP 422
Query: 944 ------SS------DRTIQEYARDIWNI------IPV 962
S D ++ ++ + IPV
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Score = 40.4 bits (94), Expect = 0.004
Identities = 41/260 (15%), Positives = 78/260 (30%), Gaps = 93/260 (35%)
Query: 323 AFNAGD-HTKAA------EALTNAEKICYILYPGDESVEGKVLRLKQQYT-LCSASLQDI 374
+N D H K + + N I + G +GK R+++ Y+ + ++ D
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG---EKGK--RIRENYSAMIFETIVDG 1699
Query: 375 IARFEK------RSGANVNWEEFPEKVAVQMNDTH---PTLCIPELIRILIDLKGLSWKE 425
+ EK + + + + ++ T P L + E DLK
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRS-EKGL---LSATQFTQPALTLMEKA-AFEDLK------ 1748
Query: 426 AWNITQRTVAYTNHTVLPE--AL----EKWSFE-----------LMQKLLPRH------- 461
+ + + H+ L E AL + S E MQ +PR
Sbjct: 1749 SKGLIPADATFAGHS-LGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 462 -M------EIIEMIDEELVHTIVSEYGTADPDLLE------------------------- 489
M + +E + +V G L+E
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTN 1867
Query: 490 --KRLKETRILENVDLPATF 507
+K +I + ++L +
Sbjct: 1868 VLNFIKLQKI-DIIELQKSL 1886
Score = 38.5 bits (89), Expect = 0.012
Identities = 80/549 (14%), Positives = 162/549 (29%), Gaps = 200/549 (36%)
Query: 384 ANVNWEEF----PEKVAVQMNDTHPTLCIPELI-RILIDLKGLSWKEAWNITQRTVAYTN 438
A+ E+F PE D PT EL+ + L Y +
Sbjct: 30 ASQLQEQFNKILPEPTEGFAADDEPT-TPAELVGKFL-------------------GYVS 69
Query: 439 HTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLK----- 493
V P + ++ +++ L E + + +H + ++ + L K +
Sbjct: 70 SLVEPSKVGQFD-QVLNLCL-TEFENCYLEGND-IHALAAKLLQENDTTLVKTKELIKNY 126
Query: 494 -ETRILENVDLP-ATFADLF--VKTKESTDVV-------PD---DELENCDEEGGP-VDE 538
RI+ + + LF V + V D +EL + + V +
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186
Query: 539 ELESAQEDGVLEEEKEAEAVQE-------------------PPQ--------------LV 565
++ + E L E E P + ++
Sbjct: 187 LIKFSAE--TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI 244
Query: 566 RMANLCVV----GSH------AVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPR 615
++A+ V G + G +VT E W F + +T
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE-TDSWESFFVSVRKAITVL 303
Query: 616 RWI------RFCNPDLSSILTSWLGTEDWVTN-----------TG-KLAELRKFAD--NE 655
+I + N L + ED + N + +++ + + N
Sbjct: 304 FFIGVRCYEAYPNTSLPPSI-----LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 656 DL--QSQFRAAKRNN-KMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVY 712
L Q + N K VV +G P +++ G+
Sbjct: 359 HLPAGKQVEISLVNGAKNLVV------SGP---PQSLY------------------GLNL 391
Query: 713 RYKKMKEMSAVER-KAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLL 771
+K K S +++ + F ++R +KF
Sbjct: 392 TLRKAKAPSGLDQSRIPF-----------------SERKLKFSNR--------------- 419
Query: 772 KVIFVPDYNVSV---AELLIPASE-LSQHISTAGMEASGTSNMKFAMNGCILIGTLDGAN 827
F+P V+ + LL+PAS+ +++ + + + +++ + T DG++
Sbjct: 420 ---FLP---VASPFHSHLLVPASDLINKDLVKNNVSFNA-KDIQIP-----VYDTFDGSD 467
Query: 828 VEIRQEVGE 836
+R G
Sbjct: 468 --LRVLSGS 474
Score = 36.2 bits (83), Expect = 0.061
Identities = 40/299 (13%), Positives = 83/299 (27%), Gaps = 101/299 (33%)
Query: 279 SHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWS-------TMVPSEDFDLSAFNAGDHTK 331
+ ++ G DI A+A + T + + P + SA +
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL-----FR 147
Query: 332 AAEALTNAEKICYILYPG--------DESVEGKVLRLKQQYTLCSASLQDIIARFEKR-- 381
A ++ ++ G +E L+ Y + D+I +
Sbjct: 148 AVGE--GNAQL-VAIFGGQGNTDDYFEE--------LRDLYQTYHVLVGDLIKFSAETLS 196
Query: 382 --------------SGANV-NWEEFPEK---------VAVQMNDTHPTLCIPELIRILID 417
G N+ W E P + + P + + +L ++
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC----PLIGVIQLAHYVVT 252
Query: 418 LKGLSWKEAWNITQRTVAYTNHT------VLPEALEKW-SF--------ELM-------Q 455
K L + + T H+ V + W SF ++
Sbjct: 253 AKLLGFTPG-ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 456 KLLPRHMEIIEMIDEELVHTIVSEYGTADP---------DLLEKRLKETRILENVDLPA 505
+ P ++++ L + G P + ++ + +T N LPA
Sbjct: 312 EAYPNTSLPPSILEDSLENNE----GVPSPMLSISNLTQEQVQDYVNKT----NSHLPA 362
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.29
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 28/89 (31%)
Query: 443 PEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDL----------LEKRL 492
PE++ KW E Q+ + ++ +D A DL +EK
Sbjct: 84 PESIRKWREE--QR------KRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Query: 493 KETRILENVDLPATFADLFVKTKESTDVV 521
RI + F + ++ D++
Sbjct: 136 INNRIAD---------KAFYQQPDA-DII 154
>1jpe_A DSBD-alpha; redox-active center, electron transport, inner
membrane, disulfide bond formation; 1.90A {Escherichia
coli} SCOP: b.1.17.1
Length = 151
Score = 31.7 bits (71), Expect = 0.48
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 84 SSGPDTASVASSIQYHAEFTPLFSPEKFEPP-KAFFATAQSVRDSLIINWN---STYEYY 139
S + ++ + + +F P +AF Q + L + W Y Y
Sbjct: 3 GSHHHHHHGSENLYFQSGLFDAPGRSQFVPADQAFAFDFQQNQHDLNLTWQIKDGYYLYR 62
Query: 140 ERLNVK 145
+++ +
Sbjct: 63 KQIRIT 68
>3nuw_A 2-OXO-3-deoxygalactonate kinase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; HET: MSE; 2.09A {Klebsiella pneumoniae}
PDB: 3r1x_A*
Length = 295
Score = 31.2 bits (70), Expect = 1.4
Identities = 18/121 (14%), Positives = 33/121 (27%), Gaps = 15/121 (12%)
Query: 91 SVASSIQYHAEFTPLFSPEKFEPPKAFFATAQSVRDSLIINWNSTYEYYERLNVKQAYYL 150
+ A F ++ A VR S ++ + E L +
Sbjct: 179 GLPPQETSAAAF--AAGLQRGINNPAVLPQLFEVRASHVLGALPREQVSEFL---SGLLI 233
Query: 151 SMEFLQGRALLNA------IGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRL 204
E + LT Y +A + +G+ + V A G+ +
Sbjct: 234 GAEVATLSDTFAGQQAISLVAGSSLTSRYQQAFAAIGREVSAVAGD--TAFQ--TGIRSI 289
Query: 205 A 205
A
Sbjct: 290 A 290
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 30.6 bits (70), Expect = 3.3
Identities = 8/65 (12%), Positives = 17/65 (26%)
Query: 536 VDEELESAQEDGVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFN 595
E+ +E E ++ R + + + E E E+
Sbjct: 240 PSPEIVKYTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIE 299
Query: 596 EFYKL 600
F +
Sbjct: 300 SFNVV 304
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 30.6 bits (69), Expect = 3.7
Identities = 18/152 (11%), Positives = 40/152 (26%), Gaps = 42/152 (27%)
Query: 23 SLSRFIE---FGSRNRTSKQKLLLIRTFNSRPPTTSFCIKCVSSQPSPKT-----KDRVT 74
S R IE F N K+ + + P +S+ + + D+V
Sbjct: 902 SGIRLIEPELFNGYNPEKKEMIQEVIVEEDLEPF-------EASKETAEQFKHQHGDKVD 954
Query: 75 EEDTSSSQNS-----SG-----PDTASVASSIQYHAEFTPLFSPEKFEPPK--------- 115
+ + G P + + ++ + +
Sbjct: 955 IFEIPETGEYSVKLLKGATLYIPKALRFDRLVA--GQIPTGWNAKTYGISDDIISQVDPI 1012
Query: 116 ---AFFATAQSVRDSLIINWNSTYEYYERLNV 144
+ ++ S YE Y+ ++V
Sbjct: 1013 TLFVLVSVVEAFIAS---GITDPYEMYKYVHV 1041
>2hp0_A IDS-epimerase; MMGE/PRPD fold, 6 helix bundle, chorismate mutase
like, ISOM; HET: MSE CSO; 1.50A {Agrobacterium
tumefaciens} PDB: 2hp3_A*
Length = 466
Score = 30.1 bits (68), Expect = 4.3
Identities = 6/38 (15%), Positives = 10/38 (26%), Gaps = 2/38 (5%)
Query: 231 FKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFY 268
E+ + G PW I + K +
Sbjct: 253 ILAMYGAQPGPELFNAMQKFGTPWAIIAPGLYK--KSW 288
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 29.6 bits (67), Expect = 5.2
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 11/54 (20%)
Query: 137 EYYER-LNVKQAYYLSMEFLQGRALLNAIGNLGLT----GAYAEALSKLGQSLE 185
E+Y+ L + + QGRA GNLG T G + A+ + L
Sbjct: 204 EFYQENLKLMRDLG--DRGAQGRAC----GNLGNTYYLLGDFQAAIEHHQERLR 251
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 5.9
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 175 EALSKLGQSLENVVSQEPDAA 195
+AL KL SL+ D+A
Sbjct: 20 QALKKLQASLK---LYADDSA 37
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding
protein, structural genomics center for infectious
disease; 2.10A {Bartonella henselae}
Length = 193
Score = 28.3 bits (63), Expect = 9.6
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 790 ASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQ 832
A H+ T + G +M ++N ILIG L GA+ EIR+
Sbjct: 2 AHHHHHHMGTLEAQTQGPGSMAGSLNKVILIGNL-GADPEIRR 43
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 28.7 bits (65), Expect = 9.6
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 460 RHMEIIEMIDEELVHTIVSEYGTA-DPDLLEKRLKETRI 497
R E+ + + + G DP+ + + LK R
Sbjct: 88 RVAEMAALHGLD-PEVLDFPPGEPVDPEAVARALKRRRY 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.390
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,020,315
Number of extensions: 940386
Number of successful extensions: 2012
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1969
Number of HSP's successfully gapped: 39
Length of query: 965
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 862
Effective length of database: 3,825,930
Effective search space: 3297951660
Effective search space used: 3297951660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.7 bits)