Query 002112
Match_columns 965
No_of_seqs 172 out of 833
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 16:46:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2352 Ppc Phosphoenolpyruvat 100.0 2E-262 4E-267 2240.9 91.6 886 27-965 5-910 (910)
2 PRK00009 phosphoenolpyruvate c 100.0 7E-243 2E-247 2179.4 98.9 889 25-965 3-911 (911)
3 PTZ00398 phosphoenolpyruvate c 100.0 3E-240 7E-245 2167.3 100.2 910 26-965 45-974 (974)
4 PF00311 PEPcase: Phosphoenolp 100.0 2E-230 4E-235 2057.6 65.7 774 162-965 1-794 (794)
5 PRK13655 phosphoenolpyruvate c 100.0 1.9E-81 4.2E-86 715.1 32.7 319 517-872 116-450 (494)
6 TIGR02751 PEPCase_arch phospho 100.0 5.5E-50 1.2E-54 457.8 30.9 305 503-838 93-434 (506)
7 PF14010 PEPcase_2: Phosphoeno 99.4 7.3E-12 1.6E-16 144.3 18.2 292 519-859 117-446 (491)
8 COG1892 Phosphoenolpyruvate ca 98.9 7.8E-08 1.7E-12 108.6 19.0 298 502-841 95-424 (488)
9 PF03328 HpcH_HpaI: HpcH/HpaI 96.2 0.016 3.4E-07 62.0 8.7 161 432-629 12-187 (221)
10 PRK10558 alpha-dehydro-beta-de 95.6 0.028 6.1E-07 61.8 7.4 157 435-632 34-216 (256)
11 TIGR03239 GarL 2-dehydro-3-deo 94.9 0.05 1.1E-06 59.6 6.6 157 435-632 27-209 (249)
12 TIGR01064 pyruv_kin pyruvate k 93.9 0.21 4.6E-06 59.6 9.3 111 512-644 177-294 (473)
13 PRK08187 pyruvate kinase; Vali 90.0 0.76 1.7E-05 55.1 7.7 112 523-646 325-438 (493)
14 PRK09206 pyruvate kinase; Prov 89.8 1.1 2.4E-05 53.5 8.7 99 512-631 178-276 (470)
15 PLN02623 pyruvate kinase 89.7 1 2.2E-05 54.8 8.5 87 526-631 295-381 (581)
16 PRK05826 pyruvate kinase; Prov 89.2 1 2.3E-05 53.7 8.0 91 523-631 187-277 (465)
17 PTZ00300 pyruvate kinase; Prov 88.4 1.4 3E-05 52.5 8.1 95 515-631 156-250 (454)
18 TIGR01588 citE citrate lyase, 88.0 1.1 2.3E-05 50.3 6.7 97 523-629 86-189 (288)
19 TIGR02311 HpaI 2,4-dihydroxyhe 87.2 1.2 2.5E-05 49.0 6.3 97 524-631 86-209 (249)
20 cd00288 Pyruvate_Kinase Pyruva 86.7 2.1 4.6E-05 51.3 8.5 89 524-631 189-277 (480)
21 PRK06247 pyruvate kinase; Prov 86.2 2.2 4.8E-05 51.0 8.3 85 525-631 189-273 (476)
22 PRK06354 pyruvate kinase; Prov 85.7 2.4 5.2E-05 52.1 8.4 87 526-631 195-282 (590)
23 PRK06739 pyruvate kinase; Vali 73.1 16 0.00035 42.3 9.3 100 512-632 171-270 (352)
24 PF00224 PK: Pyruvate kinase, 72.2 6.5 0.00014 45.4 5.9 91 523-632 190-280 (348)
25 PRK14725 pyruvate kinase; Prov 68.7 14 0.00031 45.4 7.9 108 526-646 448-555 (608)
26 COG1242 Predicted Fe-S oxidore 66.8 2.9 6.2E-05 46.5 1.4 29 728-756 81-126 (312)
27 PRK10128 2-keto-3-deoxy-L-rham 65.9 22 0.00048 39.6 8.2 71 551-632 144-216 (267)
28 PLN02765 pyruvate kinase 60.1 35 0.00076 41.6 8.9 87 526-630 224-310 (526)
29 COG2301 CitE Citrate lyase bet 58.9 8.2 0.00018 43.3 3.2 100 522-634 80-184 (283)
30 PLN02461 Probable pyruvate kin 57.7 41 0.00088 41.0 8.9 88 525-631 210-297 (511)
31 PF02585 PIG-L: GlcNAc-PI de-N 56.5 32 0.0007 33.2 6.6 56 585-650 65-120 (128)
32 PF01373 Glyco_hydro_14: Glyco 54.1 13 0.00028 43.6 3.9 73 552-641 5-84 (402)
33 PTZ00066 pyruvate kinase; Prov 53.5 45 0.00097 40.6 8.4 87 526-631 227-313 (513)
34 cd00727 malate_synt_A Malate s 53.0 29 0.00063 42.1 6.7 97 522-628 185-302 (511)
35 cd00480 malate_synt Malate syn 51.6 25 0.00053 42.8 5.8 95 525-629 187-303 (511)
36 PRK09255 malate synthase; Vali 48.7 40 0.00087 41.1 7.0 97 522-628 206-323 (531)
37 PLN02762 pyruvate kinase compl 48.6 78 0.0017 38.6 9.3 89 526-631 220-308 (509)
38 TIGR01417 PTS_I_fam phosphoeno 46.3 41 0.00088 41.5 6.7 102 522-636 383-505 (565)
39 PF02526 GBP_repeat: Glycophor 44.6 17 0.00037 27.8 1.9 18 569-586 7-24 (38)
40 TIGR01344 malate_syn_A malate 44.4 28 0.00061 42.2 4.8 95 525-628 188-303 (511)
41 PF12897 Aminotran_MocR: Alani 44.0 16 0.00035 42.7 2.5 63 523-585 344-422 (425)
42 PRK06464 phosphoenolpyruvate s 41.2 25 0.00054 45.1 3.9 93 526-631 640-747 (795)
43 PLN00197 beta-amylase; Provisi 40.2 25 0.00054 42.7 3.4 32 608-642 162-196 (573)
44 PLN02803 beta-amylase 39.8 26 0.00056 42.4 3.5 34 607-643 141-177 (548)
45 TIGR01418 PEP_synth phosphoeno 39.5 56 0.0012 41.9 6.6 93 526-631 633-740 (782)
46 COG3294 HD supefamily hydrolas 39.0 28 0.00061 37.8 3.3 123 557-696 12-159 (269)
47 PLN02801 beta-amylase 38.5 28 0.00061 41.9 3.5 34 607-643 71-107 (517)
48 PLN02905 beta-amylase 36.8 30 0.00066 42.5 3.4 34 607-643 320-356 (702)
49 PLN02705 beta-amylase 35.7 32 0.0007 42.2 3.5 33 607-642 302-337 (681)
50 PLN02161 beta-amylase 35.0 34 0.00074 41.2 3.5 54 607-669 151-212 (531)
51 KOG3831 Uncharacterized conser 31.3 42 0.0009 34.1 2.9 48 560-621 61-108 (196)
52 PF12133 Sars6: Open reading f 30.9 12 0.00025 31.5 -0.8 44 433-481 15-58 (62)
53 TIGR01093 aroD 3-dehydroquinat 29.3 1.8E+02 0.0039 31.4 7.6 45 501-547 130-174 (228)
54 PLN02389 biotin synthase 28.0 1.5E+02 0.0032 34.9 7.1 45 504-548 211-255 (379)
55 PF04852 DUF640: Protein of un 26.8 1.1E+02 0.0025 30.5 5.0 41 248-320 91-131 (132)
56 TIGR03191 benz_CoA_bzdO benzoy 25.5 4.1E+02 0.0089 31.8 10.3 112 174-292 153-271 (430)
57 COG4992 ArgD Ornithine/acetylo 22.2 78 0.0017 37.4 3.4 132 553-725 75-220 (404)
58 PLN02626 malate synthase 20.9 2.2E+02 0.0047 35.1 6.8 95 525-628 214-329 (551)
No 1
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=2e-262 Score=2240.94 Aligned_cols=886 Identities=43% Similarity=0.721 Sum_probs=833.1
Q ss_pred chHhhHHHHHHHHHHH-HHHHhhhChhHHHHHHHHHHHHHhhhcCCChhHHHHHHHHhcCCCcchHHHHHHHHHHHhhhh
Q 002112 27 DDKLVEYDALLLDRFL-DILQDLHGEDIRETVQECYELSAEYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNLA 105 (965)
Q Consensus 27 ~~~~l~~~~~ll~~ll-evl~e~~G~~~~~~vE~iR~la~~~~~~~~~~~~~~L~~~l~~L~~~~~~~vaRAFs~yf~L~ 105 (965)
++..++.|+.+||.+| |+|+++.|+++|++||+||+++++.|.+ +..++++|.+.+.+|+.+++..|+||||+|++|+
T Consensus 5 ~~~~lr~~v~~Lg~lLge~i~e~~g~~~~e~ve~ir~~s~~~r~~-~~~~~~~L~~~l~~Ls~~~~~~vaRaFs~f~~L~ 83 (910)
T COG2352 5 KYSALRSDVSMLGRLLGETIREAEGEAILELVETIRKLSKESRAG-DQADRQELEATLANLSNDEAIPVARAFSQFLLLA 83 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcc-chhhHHHHHHHHcCCCHhhhhHHHHHHHHHhhhh
Confidence 5678999999999998 9999999999999999999999988775 4567789999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCCcccCcCCCcchHHHHHHHHHHHcCCCHHHHHHHhhcCceeEeeccCCCccchhhHHHHH
Q 002112 106 NLAEEVQIAYRRRIKLKKGDFVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKH 185 (965)
Q Consensus 106 NiAEe~hr~r~~r~~~~~~~~~~~~~~~~~~sl~~~l~~L~~~~g~~~e~i~~~L~~~~i~pVlTAHPTEa~RrtvL~~~ 185 (965)
||||++|+.|+++.+...+. ..+++..++++| ++.|++++++.+.|.++.|+|||||||||++||||++|+
T Consensus 84 NiaEd~~~~~r~~~~~~~~~--------~~~sL~~~~~~L-k~~~~~~~~v~~~l~~l~v~lVLTAHPTEv~RrTv~~~~ 154 (910)
T COG2352 84 NIAEDYHRIRRRQIHEAAGD--------SDGSLAATLKKL-KEQGLSPETVARALENLNVELVLTAHPTEVQRRTVIDKQ 154 (910)
T ss_pred hHHHHhhhHhhhhhhhccCC--------CcchHHHHHHHH-HhcCCCHHHHHHHHHhCceeEEEecCchHHHHHHHHHHH
Confidence 99999999987765544321 338999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhcccccCCCCCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 002112 186 GRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNI 265 (965)
Q Consensus 186 r~I~~~L~~~~~~~~~~~e~~~~~~~L~~~i~~LW~T~eiR~~kPtv~DE~~~~l~y~~~~l~~avP~~~~~l~~~l~~~ 265 (965)
++|..+|.+++...+++. +++++++|++.|..+|||++||..||||.||++||++||++|||++||+++++++.++.++
T Consensus 155 ~~I~~lL~~~~~~~~~~~-~~~~~~~L~~~I~~~W~TdeiR~~rptv~DEi~~gl~y~~~sl~~avP~l~r~~~~~~~~~ 233 (910)
T COG2352 155 REINRLLRKLDHADLSDE-RARIRRRLRRLIAQLWQTDEIRKLRPTVLDEIKNGLAYYENSLWQAVPKLLRELNEALQET 233 (910)
T ss_pred HHHHHHHHHhhcccchhH-HHHHHHHHHHHHHHHhhhhHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999987766666 9999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCcccccccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcC----CCCCHHHHHHHhhh
Q 002112 266 GINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDLMFELSM----WRCNDELRARADGL 341 (965)
Q Consensus 266 ~~~~~~p~~~~~i~fgSWiGGDRDGNP~VT~~vT~~~l~~~r~~al~~y~~~l~~L~~~LS~----~~~s~~l~~~~~~~ 341 (965)
++ ...|..++|++|||||||||||||||||+||++++..+|+.++++|.++|.+|+.+||+ ++||++|+++++..
T Consensus 234 ~~-~~~~~~~~p~~~gSWiGGDRDGNPfVTae~tr~~~~~~r~~~~~~Yl~~i~~L~~eLS~S~~~~~vs~el~ala~~~ 312 (910)
T COG2352 234 FG-ELLPVEAVPLRFGSWIGGDRDGNPFVTAETTRQALLLQRWKALDLYLKEIQKLYSELSMSTRLVKVSPELLALAGES 312 (910)
T ss_pred cc-cccCCCCCccccccCccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhcccCCHHHHHHHhcC
Confidence 75 45676778999999999999999999999999999999999999999999999999999 68999999987653
Q ss_pred hhcchhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCChHHhhhHHHHHHHHHHhcC
Q 002112 342 HRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCACG 421 (965)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~EPyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~y~~~~ell~dL~~i~~SL~~~~ 421 (965)
.+. ..+ ..+||||++|..|+.||.+|..++.+...+.. ......+|.+++||++||..|++||.+||
T Consensus 313 ~d~----~~~--------r~~EPYR~al~~i~~rL~~T~~~l~~~~~~~~-~~~~~~~y~~~~el~~dL~~i~~SL~~~G 379 (910)
T COG2352 313 QDQ----SIR--------RADEPYRRALKYIRSRLMATQAYLDGLLAGEE-GVGPEPPYTSPEELLEDLYAIYQSLHACG 379 (910)
T ss_pred ccc----cch--------hccccHHHHHHHHHHHHHHHHHHHhccccccc-cCCCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 322 111 35899999999999999999988766543221 22334589999999999999999999999
Q ss_pred CccccchHHHHHHHHHHhcCCccccccccccchHHHHHHHHHHHHcCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Q 002112 422 DRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIG-SYREWSEEKRQEWLLSELRGKRPLFGSDLP 500 (965)
Q Consensus 422 ~~~~a~~~L~~lir~v~~FGfhla~LDiRQ~S~~H~~a~~el~~~~g~~-~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~ 500 (965)
++.+|+|.|.+++++|++|||||++|||||||++|++||+||++++|++ +|.+|+|++|++||.+||.++|||+++.++
T Consensus 380 ~~~la~g~L~~ll~~v~~FGf~L~~LDiRQ~S~~h~~avaEL~~~ag~~~dY~~lsE~~K~~~L~~EL~s~RPL~p~~~~ 459 (910)
T COG2352 380 MEILADGRLLDLLRRVEVFGFHLVSLDIRQESTRHEEAVAELLRYAGLGADYSSLSEEDKQAFLLRELSSRRPLLPPFWQ 459 (910)
T ss_pred CceeccchHHHHHHHHHhcCceeeccccccccchHHHHHHHHHHHccCCCChhhcCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhC----CCcchhhHHhccCCChhhHHHHHHHHHHcCCC----CCCccccccCChHHHhchHHHH
Q 002112 501 KTEEIADVLDTFHVISEL----PADSFGAYIISMATAPSDVLAVELLQRECRVK----QPLRVVPLFEKLADLEAAPASV 572 (965)
Q Consensus 501 ~s~~~~e~l~~f~~i~~~----~~~~~~~yIISmt~sasDvL~vl~L~ke~Gl~----~~l~VvPLFETi~DL~~a~~Im 572 (965)
+|+.++++|+||++++++ |.++|++||||||+++||||||++|+||+|+. .+++|||||||||||+||+.||
T Consensus 460 ~Se~t~~~L~t~r~a~~~~~~~G~~~i~~yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvPLFETieDL~na~~vm 539 (910)
T COG2352 460 PSEETREELATFRVAAEAKDEFGEDAIGAYIISMAESVSDVLEVLLLLKEAGLVDPERARVPVVPLFETIEDLDNAPDVM 539 (910)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCHHHHHHHHHHHHHhCCCCccCCccccccccccHHHHhccHHHH
Confidence 999999999999999976 56789999999999999999999999999997 7999999999999999999999
Q ss_pred HHHhccHHHHhhc---CCeeEEEEeeccCCcchhhHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCchhhh
Q 002112 573 ARLFSIDWYRNRI---SGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTHLA 649 (965)
Q Consensus 573 ~~ll~~p~yr~~l---~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~va~~~gV~l~~FHGRGGsvgRGGGPt~~a 649 (965)
++||+.|+||..| +|.||||||||||||||||+||||++|+||+.|+++|+++||+++|||||||||||||||+|.|
T Consensus 540 ~~ll~l~~yR~~l~~~~n~QEVMlGYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~LrlFHGRGGtVGRGGGPa~~A 619 (910)
T COG2352 540 TQLLNLPLYRALLAGRGNVQEVMLGYSDSNKDGGYLAANWALYKAQLALVELCEKAGVELRLFHGRGGSVGRGGGPAYAA 619 (910)
T ss_pred HHHHcChHHHHHHcCCCCceEEEecccccccccchhhhHHHHHHHHHHHHHHHHHhCceEEEEccCCCCCCCCCchHHHH
Confidence 9999999999999 3599999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcccCceeeecccchhhhhcCChhHHHHHHHHHHHHHHHccCCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhhc
Q 002112 650 ILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPP-VSPKPEWRALMDEMAVIATKEYRSIVFQ 728 (965)
Q Consensus 650 ilaqP~gs~~g~ir~TeQGEvI~~kyg~~~~A~r~Le~~~aa~l~~sl~~~-~~~~~~~~~~m~~ls~~s~~~Yr~lv~~ 728 (965)
|+|||||||+|+||+|||||||+.|||+|++|.||||.+++|+|++++.|+ +.|+++|+.+||++|+.||++||+|||+
T Consensus 620 ILsQP~gsv~g~iRiTEQGE~I~~Kyg~p~~A~~nLe~l~sAvLeAsllp~~~dp~~~~~~iMd~ls~~S~~~YR~lV~~ 699 (910)
T COG2352 620 ILSQPPGSVKGRIRITEQGEMIAFKYGLPEVARRNLETLVSAVLEASLLPPKPDPKESWRAIMDELSDISCDAYRGLVRE 699 (910)
T ss_pred HhcCCCcccCCceEeehhHHHHHHhhCChHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999877 6778889999999999999999999999
Q ss_pred CCchHHHHHhhCchhHhhhCCCCCCCCccCCC-CCCCCccccchhhhhhhhhccccchhhHHHHHHHHHHhCCCcHHHHH
Q 002112 729 EPRFVEYFRLATPEMEYGRMNIGSRPSKRKPS-GGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIKNLHMLQ 807 (965)
Q Consensus 729 ~p~F~~yF~~aTPi~ei~~lnIGSRPakR~~~-~~l~dLRAIPWVFaWtQ~R~~lP~WyGvGsAL~~~~~~~~~~~~~L~ 807 (965)
+|+|++||+++|||+||++|||||||||||.. ++++|||||||||||||+|+|||||||+|+|+++++++++++++.|+
T Consensus 700 ~pdFvdyF~~~TPi~EIs~LniGSRPA~Rk~~~~~ie~LRAIPWVFSWsQnR~mLP~WyG~Gsal~~~i~~g~~~~~~L~ 779 (910)
T COG2352 700 NPDFVDYFRQATPIQEISKLNIGSRPASRKPTTGGIESLRAIPWVFSWTQNRLMLPAWYGVGSALQRFIEEGPENLALLR 779 (910)
T ss_pred CCcHHHHHHhcCcHHHHhcCCCCCCCcCCCCCCCccccccccchhhhhhhhhhcchhhhhhhHHHHHHHHcCcchHHHHH
Confidence 99999999999999999999999999999986 56999999999999999999999999999999999999988899999
Q ss_pred HHHhhChhHHHHHHHHHHHHHhcCHHHHHHHhhccCCccch-HHHHHHHHHHHHHHHHHHHHhCCCCccCCCchHHHHHH
Q 002112 808 EMYNLWPFFRVTIDLVEMVFAKGDPGIAALYDKLLVSEELQ-PFGEKLRANYAETKSLLLQVAGHRDLLEGDPYLKQRLR 886 (965)
Q Consensus 808 ~my~~wpfF~~~ldn~em~LaKaD~~Ia~~Y~~l~~d~~~~-~i~~~i~~E~~~T~~~vl~itg~~~Ll~~~p~l~~si~ 886 (965)
+||++||||+++|+||+|||+|+||.||++|+++++|+++. ++|+.|++||+.|+++++.|+|+++||+++|+|++||.
T Consensus 780 ~m~~~WPFF~s~Lsn~emvlaKsd~~iA~~Y~qll~d~~~~~~lf~~i~~e~~~T~~~vl~I~~~~~LL~d~p~La~Si~ 859 (910)
T COG2352 780 DMYQNWPFFSSRLSNMEMVLAKSDLWLAEHYAQLLVDPELGERLFDQIREEYQLTRKVVLAITGHDELLADNPWLAESIA 859 (910)
T ss_pred HHHhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999965 99999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHhcCCCCCCccCCcchhhhhhccchhhhhhhcCCCCCCCcchhHHHHHHHHHHHhhhccCC
Q 002112 887 LRDAYITTLNVCQAYTLKQIRDPNFHVKVRPHLSKEYMESRKPAAELVRLNPTSEYAPGLEDTVILTMKGIAAGMQNTG 965 (965)
Q Consensus 887 ~R~pyvdpLn~lQvelL~r~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~TingIAaGlrnTG 965 (965)
+||||+||||++|||||||+|+.... + .++.+++++++|||||||||||||
T Consensus 860 lRn~Y~dPLn~LQvELLkR~R~~~~~-~---------------------------~~~~~er~i~lTInGIAaGlRNTG 910 (910)
T COG2352 860 LRNPYLDPLNVLQVELLKRSRQSKRG-D---------------------------PDPEVERALLLTINGIAAGLRNTG 910 (910)
T ss_pred HhccccChhHHHHHHHHHHHhhcccC-C---------------------------CCHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999964310 0 146799999999999999999999
No 2
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=100.00 E-value=7.2e-243 Score=2179.37 Aligned_cols=889 Identities=44% Similarity=0.738 Sum_probs=821.8
Q ss_pred CCchHhhHHHHHHHHHHH-HHHHhhhChhHHHHHHHHHHHHHhhhcCCChhHHHHHHHHhcCCCcchHHHHHHHHHHHhh
Q 002112 25 SEDDKLVEYDALLLDRFL-DILQDLHGEDIRETVQECYELSAEYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLN 103 (965)
Q Consensus 25 ~~~~~~l~~~~~ll~~ll-evl~e~~G~~~~~~vE~iR~la~~~~~~~~~~~~~~L~~~l~~L~~~~~~~vaRAFs~yf~ 103 (965)
...+.+|+.|+++||.+| +||++++|+++|++||+||.+++..+.+ +++..++|.+.+.+|+++++..|+||||+||+
T Consensus 3 ~~~~~~Lr~dv~~Lg~lLg~vi~~~~g~~~~~~ve~ir~~~~~~r~~-~~~~~~~L~~~l~~L~~~e~~~v~raFs~~~~ 81 (911)
T PRK00009 3 NEKDAPLREDVRLLGRLLGDTIREQEGDEVFDLVETIRKLSKSSRRG-DDAAREELLKLLKNLSNDELLPVARAFSQFLN 81 (911)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhccc-cchhHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 456778999999999998 9999999999999999999999986654 33445689999999999999999999999999
Q ss_pred hhcHHHHHHHHHHHHHHhhcCCCcccCcCCCcchHHHHHHHHHHHcCCCHHHHHHHhhcCceeEeeccCCCccchhhHHH
Q 002112 104 LANLAEEVQIAYRRRIKLKKGDFVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQ 183 (965)
Q Consensus 104 L~NiAEe~hr~r~~r~~~~~~~~~~~~~~~~~~sl~~~l~~L~~~~g~~~e~i~~~L~~~~i~pVlTAHPTEa~RrtvL~ 183 (965)
|+|||||+|++|++|++...+ .+.++||..++.+| +++|++++++++.|+++.|+|||||||||++|||||+
T Consensus 82 L~NiAEe~~~~r~~r~~~~~~-------~~~~~sl~~~~~~l-~~~g~~~e~i~~~L~~~~i~pVlTAHPTE~~RrtvL~ 153 (911)
T PRK00009 82 LANIAEDYHHIRRRREHASGS-------QPQPGSLAETLRRL-KAAGVSPEELARALEELDIEPVLTAHPTEVQRRTLLD 153 (911)
T ss_pred HHHHHHHHHHHHHHHHhhccC-------CCCCCcHHHHHHHH-HHcCCCHHHHHHHHhhCcceeeeecCCcccchHHHHH
Confidence 999999999999888765432 14679999999999 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhcccccCCCCCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 002112 184 KHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALK 263 (965)
Q Consensus 184 ~~r~I~~~L~~~~~~~~~~~e~~~~~~~L~~~i~~LW~T~eiR~~kPtv~DE~~~~l~y~~~~l~~avP~~~~~l~~~l~ 263 (965)
+|++|+.+|.++++..+++.|+++++++|+++|+.||||+++|+.||||.||++||++||+++||++||.+|+++++++.
T Consensus 154 ~~~~I~~~L~~~d~~~~t~~e~~~~~~~l~~~i~~LW~T~eiR~~KPtv~DE~~~gl~y~~~~l~~aiP~~~~~l~~al~ 233 (911)
T PRK00009 154 KQREIAALLRQLDDVDLTPRERAKIERRLRRLIAQLWQTDEIRQFRPTVVDEIKNGLAYYENSLWQAVPKLYRELEEALE 233 (911)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhCcchhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCcccccccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcC----CCCCHHHHHHHh
Q 002112 264 NIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDLMFELSM----WRCNDELRARAD 339 (965)
Q Consensus 264 ~~~~~~~~p~~~~~i~fgSWiGGDRDGNP~VT~~vT~~~l~~~r~~al~~y~~~l~~L~~~LS~----~~~s~~l~~~~~ 339 (965)
.++. ...|..+++|+||||||||||||||||++||++|+.++|+.|+++|++++++|.++||+ .+||+++.++.+
T Consensus 234 ~~~~-~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~l~~~r~~al~~Y~~~l~~L~~~LS~S~~~~~~s~~l~~l~~ 312 (911)
T PRK00009 234 EHFG-LQLPLDAAPLRFGSWIGGDRDGNPNVTAEVTREVLLLQRWVALDLYLKELHALGSELSMSTRLVEVSPELRALAG 312 (911)
T ss_pred HhcC-ccCCCCCceeeeccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCHHHHHHhh
Confidence 8753 44565678999999999999999999999999999999999999999999999999999 579999988554
Q ss_pred hhhhcchhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcCCCCCChHHhhhHHHHHHHHHHh
Q 002112 340 GLHRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGISDIPEDIAYTHVEQFLEPLELCYRSLCA 419 (965)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~EPyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~y~~~~ell~dL~~i~~SL~~ 419 (965)
...+. ...+.+||||++|..|++||.+|...+.....+.. ..+...+|.+++||++||..|++||++
T Consensus 313 ~~~~~------------~~~~~~EPYR~~l~~i~~rL~~t~~~~~~~~~~~~-~~~~~~~Y~~~~ell~dL~~i~~SL~~ 379 (911)
T PRK00009 313 ASPDQ------------SPHRRDEPYRRALKGIRARLAATADWLEARLAGEE-APPPADPYASAEELLADLDLIYQSLRA 379 (911)
T ss_pred ccccc------------ccccCCCcHHHHHHHHHHHHHHHHHHHHhhhccCC-CCcccccCCCHHHHHHHHHHHHHHHHh
Confidence 32111 12356899999999999999999987653332111 111234799999999999999999999
Q ss_pred cCCccccchHHHHHHHHHHhcCCccccccccccchHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Q 002112 420 CGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLLSELRGKRPLFGSDL 499 (965)
Q Consensus 420 ~~~~~~a~~~L~~lir~v~~FGfhla~LDiRQ~S~~H~~a~~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~ 499 (965)
+|+..+|+|.|.++||+|++|||||++|||||||++|++|++||++++|+++|.+|||++|++||.++|.++||++++..
T Consensus 380 ~~~~~~A~~~L~~lir~v~~FGfhla~LDiRQ~S~~H~~ai~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~ 459 (911)
T PRK00009 380 CGMGILANGRLLDLLRRVEVFGFHLARLDIRQESSRHEDAVAELTRYLGLGDYASLSEAEKQAFLLRELNSRRPLIPPNW 459 (911)
T ss_pred CCCccchhhHHHHHHHHHHhhCcccCCcccccChHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhCCCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999888
Q ss_pred CCCHHHHHHHHHH----HHHHhCCCcchhhHHhccCCChhhHHHHHHHHHHcCCC------CCCccccccCChHHHhchH
Q 002112 500 PKTEEIADVLDTF----HVISELPADSFGAYIISMATAPSDVLAVELLQRECRVK------QPLRVVPLFEKLADLEAAP 569 (965)
Q Consensus 500 ~~s~~~~e~l~~f----~~i~~~~~~~~~~yIISmt~sasDvL~vl~L~ke~Gl~------~~l~VvPLFETi~DL~~a~ 569 (965)
.+|+++.+++++| ++++.+++++|++||||||+++||||+|++|+|++|+. ++|+|||||||++||+||+
T Consensus 460 ~~s~~~~~~l~~~~~~~~~~~~~~~~~i~~yIiSmt~~~sdvL~v~~l~k~~gl~~~~~~~~~l~VvPLFEti~dL~~a~ 539 (911)
T PRK00009 460 EYSELTSKELAEFLAARRLIAEFGAEAIGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVPLFETIEDLRNAA 539 (911)
T ss_pred ccChhhHHHHHHHHHHHHHHHHhCchhhceEeecCCCCHHHHHHHHHHHHHcCCCccCCCCCCcCeECCcCCHHHHHhHH
Confidence 7766665555554 55556789999999999999999999999999999985 3899999999999999999
Q ss_pred HHHHHHhccHHHHhhc---CCeeEEEEeeccCCcchhhHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCch
Q 002112 570 ASVARLFSIDWYRNRI---SGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPT 646 (965)
Q Consensus 570 ~Im~~ll~~p~yr~~l---~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~va~~~gV~l~~FHGRGGsvgRGGGPt 646 (965)
.||++||++|+||+|+ ++.|||||||||||||||+++|+|+||+||++|+++|++|||+++|||||||||||||||+
T Consensus 540 ~il~~l~~~p~yr~~l~~~~~~qeVMlGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~FhGrGGsv~RGGgp~ 619 (911)
T PRK00009 540 DVMRQLLSLPWYRGLIAGRGNLQEVMLGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTLFHGRGGTVGRGGGPA 619 (911)
T ss_pred HHHHHHHcChHHHHHHhcCCCeEEEEeecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCChH
Confidence 9999999999999999 4689999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCcccCceeeecccchhhhhcCChhHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002112 647 HLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSIV 726 (965)
Q Consensus 647 ~~ailaqP~gs~~g~ir~TeQGEvI~~kyg~~~~A~r~Le~~~aa~l~~sl~~~~~~~~~~~~~m~~ls~~s~~~Yr~lv 726 (965)
|+||+||||||++|+||+|||||||++|||+|.+|.+|||++++|+|++++.++++++++|+++|++||+.|+++||++|
T Consensus 620 ~~ai~~qp~g~~~g~iR~TeQGEvI~~kY~~~~~a~~nLE~~~~a~l~~~~~~~~~~~~~~~~~m~~ls~~s~~~Yr~lv 699 (911)
T PRK00009 620 YAAILSQPPGSVKGRIRVTEQGEVIRSKYGLPEVARRNLELLTAATLEASLLPPPEPKPEWREIMDELSDRSCKAYRGLV 699 (911)
T ss_pred HHHHHhCCCccccCceEEEeechhHHHhcCChHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999876555678899999999999999999999
Q ss_pred hcCCchHHHHHhhCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhhccccchhhHHHHHHHHHHhC-CCcHHH
Q 002112 727 FQEPRFVEYFRLATPEMEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKD-IKNLHM 805 (965)
Q Consensus 727 ~~~p~F~~yF~~aTPi~ei~~lnIGSRPakR~~~~~l~dLRAIPWVFaWtQ~R~~lP~WyGvGsAL~~~~~~~-~~~~~~ 805 (965)
|++|+|++||+++||+.||+.|||||||+||+++++++|||||||||||+|+|+++|||||+|+||+++++++ +++++.
T Consensus 700 ~~~~~F~~yf~~~tP~~e~~~l~IGSRP~~R~~~~~i~~lRAIPwvfsW~Q~R~~lP~w~G~Gsal~~~~~~~~~~~~~~ 779 (911)
T PRK00009 700 RENPDFVDYFRAATPIQEIGKLNIGSRPASRKPTGGIESLRAIPWVFSWSQNRLMLPGWYGVGSALQAAIDDEPPGRLAL 779 (911)
T ss_pred hcCCCHHHHHHHhChHHHHHhccccCCCCCCCCCCCccccccchhhhhHHhhhccchHHhhHHHHHHHHHhccCcchHHH
Confidence 9999999999999999999999999999999977899999999999999999999999999999999998763 246899
Q ss_pred HHHHHhhChhHHHHHHHHHHHHHhcCHHHHHHHhhccCCccchH-HHHHHHHHHHHHHHHHHHHhCCCCccCCCchHHHH
Q 002112 806 LQEMYNLWPFFRVTIDLVEMVFAKGDPGIAALYDKLLVSEELQP-FGEKLRANYAETKSLLLQVAGHRDLLEGDPYLKQR 884 (965)
Q Consensus 806 L~~my~~wpfF~~~ldn~em~LaKaD~~Ia~~Y~~l~~d~~~~~-i~~~i~~E~~~T~~~vl~itg~~~Ll~~~p~l~~s 884 (965)
||+||++||||+++|||++|+|+||||.||++|+++|+|++++. ||++|++||++|+++|++|||+++||+++|++++|
T Consensus 780 L~~my~~WPFF~~~ldn~em~LaKaD~~Ia~~Y~~ll~d~~~~~~i~~~I~~E~~~T~~~ll~itg~~~Ll~~~p~l~~s 859 (911)
T PRK00009 780 LREMYQDWPFFRTLLSNLEMVLAKADLNIAERYAQLLVDKELRPRLFERIRDELELTIKVVLAITGQDELLADNPWLARS 859 (911)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccChHHHHH
Confidence 99999999999999999999999999999999999999998885 99999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhHHHHHHHHHHhcCCCCCCccCCcchhhhhhccchhhhhhhcCCCCCCCcchhHHHHHHHHHHHhhhccC
Q 002112 885 LRLRDAYITTLNVCQAYTLKQIRDPNFHVKVRPHLSKEYMESRKPAAELVRLNPTSEYAPGLEDTVILTMKGIAAGMQNT 964 (965)
Q Consensus 885 i~~R~pyvdpLn~lQvelL~r~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~TingIAaGlrnT 964 (965)
|++|||||||||++||+||||+|+.+.. .++.+.++|++||||||||||||
T Consensus 860 i~~R~pyvdpLn~lQvelL~r~R~~~~~-----------------------------~~~~l~~~l~~TInGIAaGlrNT 910 (911)
T PRK00009 860 IRLRNPYLDPLNHLQVELLKRLRAQEGD-----------------------------PDEEVERAIHLTINGIAAGLRNT 910 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccC-----------------------------CCHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999974210 14669999999999999999999
Q ss_pred C
Q 002112 965 G 965 (965)
Q Consensus 965 G 965 (965)
|
T Consensus 911 G 911 (911)
T PRK00009 911 G 911 (911)
T ss_pred C
Confidence 9
No 3
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=100.00 E-value=3.1e-240 Score=2167.31 Aligned_cols=910 Identities=43% Similarity=0.713 Sum_probs=831.5
Q ss_pred CchHhhHHHHHHHHHHH-HHHHhhhChhHHHHHHHHHHHHHhhhcCCChhHHHHHHHHhcCCCcchHHHHHHHHHHHhhh
Q 002112 26 EDDKLVEYDALLLDRFL-DILQDLHGEDIRETVQECYELSAEYEGKRDSQKLEELGNVLTSLDPGDSIVVTKSFSHMLNL 104 (965)
Q Consensus 26 ~~~~~l~~~~~ll~~ll-evl~e~~G~~~~~~vE~iR~la~~~~~~~~~~~~~~L~~~l~~L~~~~~~~vaRAFs~yf~L 104 (965)
..+.+|+.|+++||.+| +||+++.|+++|++||+||.+++.++...++...++|.+.+.+|+++++..|+||||+||+|
T Consensus 45 ~~~~~L~~dv~~Lg~lLg~vl~~~~g~~~~~~ve~ir~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~v~raFs~~~~L 124 (974)
T PTZ00398 45 DFQEPLDLDIKALEFLLFDLVKDHWPEDGFEIIFDILKLSMKFSENEDSESFNTLWKKIYNLDSGYLGLVVRLFNHMCVL 124 (974)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 34568999999999998 99999999999999999999999877655555677899999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHhhcCCCcccCcCCCcchHHHHHHHHHHHcCCCHHHHHHHhhcCceeEeeccCCCccchhhHHHH
Q 002112 105 ANLAEEVQIAYRRRIKLKKGDFVDENSATTESDIEETLKRLVVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQK 184 (965)
Q Consensus 105 ~NiAEe~hr~r~~r~~~~~~~~~~~~~~~~~~sl~~~l~~L~~~~g~~~e~i~~~L~~~~i~pVlTAHPTEa~RrtvL~~ 184 (965)
+|||||+|++|++|..++.+... ..+.+|||..++.+| ++.|+++++|+++|+++.|+|||||||||++|||||+|
T Consensus 125 ~NiAE~~~~~r~~r~~~~~~~~~---~~~~~~sl~~~l~~L-~~~g~~~e~i~~~L~~~~i~pVlTAHPTE~~RrTvL~~ 200 (974)
T PTZ00398 125 SNYAEWAHRIRRRRAFERSFTDN---DRIFTESLKNTIEML-LQAGFDKEEIYKQLCNQEIDLVLTAHPTQAQRISVLKN 200 (974)
T ss_pred HHHHHHHHHHHHHHHhhcccccc---CCCccCcHHHHHHHH-HHcCCCHHHHHHHHhcCceeeeeccCCccccHHHHHHH
Confidence 99999999999888765421111 124689999999999 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhcccccCCCCCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 002112 185 HGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKN 264 (965)
Q Consensus 185 ~r~I~~~L~~~~~~~~~~~e~~~~~~~L~~~i~~LW~T~eiR~~kPtv~DE~~~~l~y~~~~l~~avP~~~~~l~~~l~~ 264 (965)
|++|+++|.++|+..+++.|++++.++|+++|+.||||+++|+.||||.||++||++||++|||++||.+|+++++++.+
T Consensus 201 ~~~I~~~L~~ld~~~~t~~e~~~~~~~L~~~I~~LW~TdeiR~~KPtv~DE~~~gl~y~~~sl~~aiP~~~~~l~~al~~ 280 (974)
T PTZ00398 201 CQRLGELLLSLDNTDLTPFEIKDLKKNLQRLLAMLWKTDTIRRAKPTPLDEAQNLINTIENTIFDALPNFIRYIDNVLYE 280 (974)
T ss_pred HHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHhCcchhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcccccccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCHHHHHHHhhhhh-
Q 002112 265 IGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRARADGLHR- 343 (965)
Q Consensus 265 ~~~~~~~p~~~~~i~fgSWiGGDRDGNP~VT~~vT~~~l~~~r~~al~~y~~~l~~L~~~LS~~~~s~~l~~~~~~~~~- 343 (965)
++. ..+|..+++|+|||||||||||||||||+||++|+.++|+.|+++|+++|++|+++||++.|+++|.++++...+
T Consensus 281 ~~~-~~~~~~~~~i~fGSWiGGDRDGNP~VTaevT~~~l~~~r~~al~~Y~~~l~~L~~~LS~s~~~~~L~~~~~~~~~~ 359 (974)
T PTZ00398 281 YNL-DPLPPTKKLFTFSSWVGGDRDGNPFVTAEVTRQVVYFNRIRACELFIHMIEKLMYDLPLKSCTEKLKEYVDNLPDE 359 (974)
T ss_pred hcC-CCCCCCCCceeccCCCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHhhhhhh
Confidence 864 345556789999999999999999999999999999999999999999999999999999999999987655321
Q ss_pred cc--------hhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCC--CCcCCCCCChHHhhhHHHHH
Q 002112 344 SS--------KRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGISD--IPEDIAYTHVEQFLEPLELC 413 (965)
Q Consensus 344 ~~--------~~~~~~~~~~~~~~~~~EPyR~~l~~i~~rL~~t~~~~~~~~~~~~~~--~~~~~~y~~~~ell~dL~~i 413 (965)
.. +...+. +.....++||||++|..|++||.+|..++.....+...+ ......|.+++||++||..|
T Consensus 360 ~~~~~~~~~~~~~~~~---~~~~~~~~EPYR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~~~Y~~~~ell~dL~~i 436 (974)
T PTZ00398 360 ISFYITDKDATYLLRE---FMGFIPEKELYRRALLHVRAKLIATRDYYKDLISNHSVDPEFRRELAYHSTDEILEPLIEC 436 (974)
T ss_pred hccccccchhhhhhhh---hcccCCCCCcHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHH
Confidence 00 001110 000112589999999999999999998775433211000 11233699999999999999
Q ss_pred HHHHHhcCCccccchHHHHHHHHHHhcCCccccccccccchHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhcCCCC
Q 002112 414 YRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLLSELRGKRP 493 (965)
Q Consensus 414 ~~SL~~~~~~~~a~~~L~~lir~v~~FGfhla~LDiRQ~S~~H~~a~~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rp 493 (965)
++||++||+..+|+|.|.++||+|++|||||++|||||||++|++||+||++++|+++|.+|||++|++||.++|.++||
T Consensus 437 ~~SL~~~g~~~lA~g~L~dlir~v~~FGfhLa~LDIRQ~S~~H~~ai~el~~~~g~~~Y~~l~E~er~~~L~~eL~~~rp 516 (974)
T PTZ00398 437 YNSLEDVGNTILARGRLLDVIRQVKTFGLHLMKLDIRQESSKHEKAMDEICEYLGLGNYSELSEEEKQDFLLDILPSKRP 516 (974)
T ss_pred HHHHHHCCChhhHhhHHHHHHHHHHHhCccccccccccCcHHHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCcchhhHHhccCCChhhHHHHHHHHHHcCCC---CCCccccccCChHHHhchHH
Q 002112 494 LFGSDLPKTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQRECRVK---QPLRVVPLFEKLADLEAAPA 570 (965)
Q Consensus 494 l~~~~~~~s~~~~e~l~~f~~i~~~~~~~~~~yIISmt~sasDvL~vl~L~ke~Gl~---~~l~VvPLFETi~DL~~a~~ 570 (965)
++++..++|++++++|+||++++++++++||+||||||+++||||+|++|+|++|+. ++|+|||||||++||+||+.
T Consensus 517 l~~~~~~~s~~~~evl~~f~~ia~~~~~alg~yIISmt~~~sdiL~V~~l~k~~g~~~~~~~l~VvPLFETi~dL~~a~~ 596 (974)
T PTZ00398 517 LIPHDLNWPSEVNEVLDTFKVCSELENEALGAYIISMCRNPSDILLVHVFQKEILKSGASKRQRVVPLLETIESLNSSSK 596 (974)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHccccccceeeeCCCCCHHHHHHHHHHHHHhCCcCCCCCcCeeCCcCCHHHHHhHHH
Confidence 999999999999999999999999999999999999999999999999999998873 68999999999999999999
Q ss_pred HHHHHhccHHHHhhc----CCeeEEEEeeccCCcchhhHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCch
Q 002112 571 SVARLFSIDWYRNRI----SGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPT 646 (965)
Q Consensus 571 Im~~ll~~p~yr~~l----~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~va~~~gV~l~~FHGRGGsvgRGGGPt 646 (965)
||++||++|+||+|+ +++|||||||||||||||+++|+|+||+||++|+++|++|||+++|||||||||||||||+
T Consensus 597 il~~ll~~p~Yr~~l~~~~~~~qeVMlGYSDS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~FhGrGGsvgRGGgp~ 676 (974)
T PTZ00398 597 TLEELFSNPWYLKHLKTVDNGIQEIMIGYSDSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRFFHGRGGSVSRGGGPQ 676 (974)
T ss_pred HHHHHHcCHHHHHHHhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCCCh
Confidence 999999999999999 5689999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCcccCceeeecccchhhhhcCChhHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHHHHHHHHHHh
Q 002112 647 HLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSP-KPEWRALMDEMAVIATKEYRSI 725 (965)
Q Consensus 647 ~~ailaqP~gs~~g~ir~TeQGEvI~~kyg~~~~A~r~Le~~~aa~l~~sl~~~~~~-~~~~~~~m~~ls~~s~~~Yr~l 725 (965)
|.||+|||+|+++|.+|+|||||||++|||++++|.+|||++++|+|++++.+++.+ +++|+++|++||+.|+++||++
T Consensus 677 ~~aIlsqp~~~~~g~ir~TeQGE~i~~ky~~~~~a~~~le~~~aA~l~~~~~~~~~~~~~~~~~~m~~la~~s~~~Yr~l 756 (974)
T PTZ00398 677 HLAILSQPPNTIKSYLRITIQGETITQNFGLKGICLRTWELYMSALLKCSLLADPIPVKQEWRELMDEMSEISMKEYRKV 756 (974)
T ss_pred HHHHhcCCCccccCeeEEeeechhhHHhcCChHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998765555 7889999999999999999999
Q ss_pred hhcCCchHHHHHhhCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhhccccchhhHHHHHHHHHHhCCCcHHH
Q 002112 726 VFQEPRFVEYFRLATPEMEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIKNLHM 805 (965)
Q Consensus 726 v~~~p~F~~yF~~aTPi~ei~~lnIGSRPakR~~~~~l~dLRAIPWVFaWtQ~R~~lP~WyGvGsAL~~~~~~~~~~~~~ 805 (965)
|+++|+|++||+++||+.+|+.|||||||+||+ ..+++|||||||||||+|+|++||||||+|+||+++++++ +++.
T Consensus 757 v~~~~~fv~yf~~atP~~e~~~L~iGSRP~~R~-~~~i~~LRAIPwvfaW~Q~r~~LP~w~G~G~al~~~~~~~--~~~~ 833 (974)
T PTZ00398 757 VRENPDFVPYFRSVTPEKEIGELNIGSRPSKRK-EGGIETLRAIPWVFAWTQNRLHLPVWLGLEDALEELKKKG--KLNL 833 (974)
T ss_pred HhcCCCHHHHHHHhChHHHHHhcccCCCCCCCC-CCCCCcccccchhhHHHhccCCchHHHhHHHHHHHHHhcC--hHHH
Confidence 999999999999999999999999999999997 5789999999999999999999999999999999998765 6899
Q ss_pred HHHHHhhChhHHHHHHHHHHHHHhcCHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHhCCCCccCCCchHHHHH
Q 002112 806 LQEMYNLWPFFRVTIDLVEMVFAKGDPGIAALYDKLLVSEELQPFGEKLRANYAETKSLLLQVAGHRDLLEGDPYLKQRL 885 (965)
Q Consensus 806 L~~my~~wpfF~~~ldn~em~LaKaD~~Ia~~Y~~l~~d~~~~~i~~~i~~E~~~T~~~vl~itg~~~Ll~~~p~l~~si 885 (965)
|++||++||||++++||++|+|+||||.||++|+++++|+++++||++|++||++|+++|++|||+++||+++|++++||
T Consensus 834 L~~m~~~wpff~~~l~~~~m~LaKaDl~IA~~Y~~~l~~~~~~~i~~~I~~E~~~T~~~ll~itg~~~Ll~~~p~l~~Si 913 (974)
T PTZ00398 834 IADMYKNWPFCKSFFNLVSMVLLKTDVQITEEYNKMLVPEQLQYIGNLLRNKLKKTTNLILLVTKEKQLLDNDIVTKRSI 913 (974)
T ss_pred HHHHHHhCHHHHHHHhHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccChHHHHHH
Confidence 99999999999999999999999999999999998898988889999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhHHHHHHHHHHhcCCCCCCccCCcchhhhhhccchhhhhhhcCCCCCCCcchhHHHHHHHHHHHhhhccCC
Q 002112 886 RLRDAYITTLNVCQAYTLKQIRDPNFHVKVRPHLSKEYMESRKPAAELVRLNPTSEYAPGLEDTVILTMKGIAAGMQNTG 965 (965)
Q Consensus 886 ~~R~pyvdpLn~lQvelL~r~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~TingIAaGlrnTG 965 (965)
++|||||||||++|||||||+|+.++..+. + -+++.++++.++++|++|||||||||||||
T Consensus 914 ~~R~pyvdpLn~lQvelL~r~R~~~~~~~~------~-------------~~~~~~~~~~l~~~l~~TInGIAaGlrNTG 974 (974)
T PTZ00398 914 LLRFKWVAPCNLIQIEALKRLRKINDSTYD------E-------------DTKNEIEDTSLEDALIISIKAIAAGMQNTG 974 (974)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccc------c-------------cccccccchHHHHHHHHHHHHHHHHcccCC
Confidence 999999999999999999999953211000 0 000011246799999999999999999999
No 4
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=100.00 E-value=1.7e-230 Score=2057.59 Aligned_cols=774 Identities=47% Similarity=0.773 Sum_probs=641.8
Q ss_pred cCceeEeeccCCCccchhhHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhhcccccCCCCCChHHHHHHHHH
Q 002112 162 NQTVDLVFTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMS 241 (965)
Q Consensus 162 ~~~i~pVlTAHPTEa~RrtvL~~~r~I~~~L~~~~~~~~~~~e~~~~~~~L~~~i~~LW~T~eiR~~kPtv~DE~~~~l~ 241 (965)
++.|+|||||||||++|||||++|++|+.+|.++++..+++.|+.+++++|+++|+.||||+++|..||||.||++|||+
T Consensus 1 ~l~i~pVlTAHPTEa~RrtvL~~~~~I~~lL~~~d~~~lt~~e~~~~~~~L~~~I~~LWqT~eiR~~KPtv~DE~~~~L~ 80 (794)
T PF00311_consen 1 ELEIEPVLTAHPTEAKRRTVLDKHRRIAELLDQLDNPDLTPRERAELEERLRREITALWQTDEIRREKPTVLDEARNGLY 80 (794)
T ss_dssp --EEEEEEE--TT--SSCHHHHHHHHHHHHHHHCT-TT--HHHHHHHHHHHHHHHHHHHCS--C-SS---HHHHHHHHHH
T ss_pred CceEEEEeccCCCcCcHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCccccccCCChHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002112 242 YFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIEDL 321 (965)
Q Consensus 242 y~~~~l~~avP~~~~~l~~~l~~~~~~~~~p~~~~~i~fgSWiGGDRDGNP~VT~~vT~~~l~~~r~~al~~y~~~l~~L 321 (965)
||+++||++||.+|+++++++.+++++ ..+..+++|+|||||||||||||||||+||++++.++|+.++++|.+++++|
T Consensus 81 y~~~~l~~aiP~l~~~l~~al~~~~~~-~~~~~~~~i~fGSWiGGDRDGNP~VTa~vT~~~l~~~r~~al~~y~~~l~~L 159 (794)
T PF00311_consen 81 YFENSLFDAIPQLYRRLERALREHYPD-PRLPVPPFIRFGSWIGGDRDGNPFVTAEVTREALRLQREAALRLYLRELDEL 159 (794)
T ss_dssp HHCCTCCCCHHHHHHHHHHHHHCCTS--S---T--SEEEEE-TTTB-TT-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC-ccCCCCCeeEeccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998752 2333489999999999999999999999999999999999999999999999
Q ss_pred HhHhcCC----CCCHHHHHHHhhhhhcchhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcC
Q 002112 322 MFELSMW----RCNDELRARADGLHRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGISDIPED 397 (965)
Q Consensus 322 ~~~LS~~----~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~ 397 (965)
.++||+| ++|++|.++++...+..+..... ...++++||||++|..|++||.+|........... ....+
T Consensus 160 ~~~LS~S~~~~~~s~~L~~~l~~~~~~~~~~~~~----~~~~~~~EPYR~~l~~i~~RL~at~~~~~~~~~~~--~~~~~ 233 (794)
T PF00311_consen 160 RRELSLSDRRVPVSDELRARLEDDREALPEVAEE----FSRRNPDEPYRRKLRLIRARLEATLRRLEAGLSGR--ADPAA 233 (794)
T ss_dssp HHH-------S---HHHHHCCHCCCH---TT-SS----SS---TTSHHHHHHHHHHHHHHHHHHHHHHHHHTS--SS-ST
T ss_pred HHHHHHhhcccccHHHHHHHHhhccccccccccc----ccccccccHHHHHHHHHHHHHHHHHHHHhhccccc--CCCcc
Confidence 9999984 79999999877654444333221 13346789999999999999999998766554322 12245
Q ss_pred CCCCChHHhhhHHHHHHHHHHhcCCccccchHHHHHHHHHHhcCCccccccccccchHHHHHHHHHHHHcCCC-CCCCCC
Q 002112 398 IAYTHVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIG-SYREWS 476 (965)
Q Consensus 398 ~~y~~~~ell~dL~~i~~SL~~~~~~~~a~~~L~~lir~v~~FGfhla~LDiRQ~S~~H~~a~~el~~~~g~~-~Y~~l~ 476 (965)
.+|.+++||++||..|++||+++|+..+|++.|.++|++|++|||||++|||||||++|++|+++|++.+|++ +|.+|+
T Consensus 234 ~~Y~~~~Ell~dL~~i~~SL~~~g~~~lA~~~L~~lir~V~~FGfhLa~LDIRQnS~~H~~av~el~~~~g~~~~Y~~l~ 313 (794)
T PF00311_consen 234 EAYRSAEELLADLRLIRDSLIANGAERLADGRLRDLIRQVETFGFHLASLDIRQNSTVHEEAVAELLRHAGIPDDYAELS 313 (794)
T ss_dssp TS--SHHHHHHHHHHHHHHHHHTT-HCCCTTHHHHHHHHHHHCTTTSSEEEEEEECHHHHHHHHHHHHCCTS---CCCS-
T ss_pred cCCCCHHHHHHHHHHHHHHHHHCCCchHHHhhHHHHHHHHhccCcceecccccccHHHHHHHHHHHHHhcCCCCCcccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999995 899999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHhC----CCcchhhHHhccCCChhhHHHHHHHHHHcCCC--
Q 002112 477 EEKRQEWLLSELRGKRPLFGSDLPKTEEIADVLDTFHVISEL----PADSFGAYIISMATAPSDVLAVELLQRECRVK-- 550 (965)
Q Consensus 477 E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~e~l~~f~~i~~~----~~~~~~~yIISmt~sasDvL~vl~L~ke~Gl~-- 550 (965)
|++|+++|.++|+++||+.++..++++++++++++|++++++ |+++|++||||||+++||||+|++|+|++|+.
T Consensus 314 e~~r~~~L~~eL~~~rpl~~~~~~~~~~~~~~l~~f~~~~~~~~~~g~~~~~~yIISmt~~~sdvL~v~~L~k~~gl~~~ 393 (794)
T PF00311_consen 314 EEERIALLTRELKSPRPLIPPFAPLSEETREVLDTFRVIAEIQKRYGPDAIGRYIISMTESASDVLEVLLLAKEAGLADG 393 (794)
T ss_dssp HHHHHHHHHHHHH-SS--S-TT----HHHHHHHHHHHHHHHS-----CCCEEEEEECT--SCHHHHHHHHHHHCTT---S
T ss_pred HHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHHHHHHHhhhcchhhhHHHheeeCCCChHHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999999987 57999999999999999999999999999994
Q ss_pred ----CCCccccccCChHHHhchHHHHHHHhccHHHHhhc---CCeeEEEEeeccCCcchhhHhHHHHHHHHHHHHHHHHH
Q 002112 551 ----QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRI---SGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAK 623 (965)
Q Consensus 551 ----~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l---~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~va~ 623 (965)
++|+||||||||+||+|||+||++||++|+||+|| +++|||||||||||||||+++|||+||+||++|+++|+
T Consensus 394 ~~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeVMlGYSDS~KDgG~laa~w~ly~Aq~~L~~v~~ 473 (794)
T PF00311_consen 394 GDGGCRLDVVPLFETIDDLENAPDIMEELLSNPAYRAHLKARGNRQEVMLGYSDSNKDGGYLAANWALYKAQEALVAVAR 473 (794)
T ss_dssp S---S---EEEEE-SHHHHHCHHHHHHHHCCSHHHHHHCTT---EEEEEEECCCHHHHC-HHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCCCCCHHHHHhHHHHHHHHHcCHHHHHHHhcCcceEEEEeccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999 46999999999999999999999999999999999999
Q ss_pred HhCCeEEEecCCCCCCCCCCCchhhhhhcCCCCcccCceeeecccchhhhhcCChhHHHHHHHHHHHHHHHccCCCCCCC
Q 002112 624 QYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSP 703 (965)
Q Consensus 624 ~~gV~l~~FHGRGGsvgRGGGPt~~ailaqP~gs~~g~ir~TeQGEvI~~kyg~~~~A~r~Le~~~aa~l~~sl~~~~~~ 703 (965)
+|||+++|||||||||||||||+|+||+|||+||++|+||+|||||||++|||+|++|.||||++++|++++++.++..+
T Consensus 474 ~~gV~l~~FHGRGGsvgRGGGp~~~ai~aqP~gtv~g~ir~TeQGEvI~~ky~~~~~A~~~LE~~~~a~l~~~~~~~~~~ 553 (794)
T PF00311_consen 474 KHGVKLRFFHGRGGSVGRGGGPTHRAILAQPPGTVNGRIRITEQGEVISAKYGNPEIAQRNLEQLTAAVLEASLRPPPEP 553 (794)
T ss_dssp CCT-EEEEEEESSTCGGCTHHHHHHHHHTS-TTTTTTEEEEEEECHHHHHHHSSHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred HcCCeEEEEeCCCCcccCCCChHHHHHHhCCCCccCCceEEeechHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999866655
Q ss_pred C-HHHHHHHHHHHHHHHHHHHHhhhcCCchHHHHHhhCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhhccc
Q 002112 704 K-PEWRALMDEMAVIATKEYRSIVFQEPRFVEYFRLATPEMEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHL 782 (965)
Q Consensus 704 ~-~~~~~~m~~ls~~s~~~Yr~lv~~~p~F~~yF~~aTPi~ei~~lnIGSRPakR~~~~~l~dLRAIPWVFaWtQ~R~~l 782 (965)
. ++|+++|++||+.|+++||+|||++|+|++||+++|||+||+.||||||||||++..+++|||||||||||||+|++|
T Consensus 554 ~~~~~~~~m~~ls~~s~~~Yr~Lv~~~p~F~~yf~~aTPi~ei~~lnIGSRPa~R~~~~~l~dLRAIPWVFsWtQ~R~~l 633 (794)
T PF00311_consen 554 PPPEWRELMEELSEASFKAYRALVYENPGFLEYFRQATPIDEIGKLNIGSRPAKRKGERSLEDLRAIPWVFSWTQSRFNL 633 (794)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHS-HHHHHHCS-SSS---------GCTS-CHHHHHHHHHTT--H
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhCCCCcHHHHHhcCHHHHHHhccccCCCccCCCCCCCCcCCcCceeeeeecccccc
Confidence 5 889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHhCCCcHHHHHHHHhhChhHHHHHHHHHHHHHhcCHHHHHHHhhccCCcc-chHHHHHHHHHHHHH
Q 002112 783 PVWLGFGAAFKHVIQKDIKNLHMLQEMYNLWPFFRVTIDLVEMVFAKGDPGIAALYDKLLVSEE-LQPFGEKLRANYAET 861 (965)
Q Consensus 783 P~WyGvGsAL~~~~~~~~~~~~~L~~my~~wpfF~~~ldn~em~LaKaD~~Ia~~Y~~l~~d~~-~~~i~~~i~~E~~~T 861 (965)
|||||||+||++++..++++++.||+||++||||+++|||++|+|+||||.||++|++|++|++ ..+||+.|++||++|
T Consensus 634 pgWyG~Gsal~~~~~~~~~~~~~L~~my~~wpfF~~~idn~~m~laK~d~~ia~~Y~~l~~~~~~~~~i~~~i~~E~~~T 713 (794)
T PF00311_consen 634 PGWYGVGSALEEFIQEDPGGLEQLQEMYREWPFFRTLIDNVEMSLAKADMDIAKRYAELVPDKELRQRIFEQIRDEYERT 713 (794)
T ss_dssp HHCTTHHHHHHHHHHCTTCCHHHHHHHHHH-HHHHHHHHHHHHHHCC--HHHHHHCHHHCS-CC-CHHHHHHHHHHHHHH
T ss_pred ceeecccHHHHHHHccCcchHHHHHHHHhcCcHHHHHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888877899999999999999999999999999999999999999999998 559999999999999
Q ss_pred HHHHHHHhCCCCccCCCchHHHHHHhhhhhhhhhHHHHHHHHHHhcCCCCCCccCCcchhhhhhccchhhhhhhcCCCCC
Q 002112 862 KSLLLQVAGHRDLLEGDPYLKQRLRLRDAYITTLNVCQAYTLKQIRDPNFHVKVRPHLSKEYMESRKPAAELVRLNPTSE 941 (965)
Q Consensus 862 ~~~vl~itg~~~Ll~~~p~l~~si~~R~pyvdpLn~lQvelL~r~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (965)
+++|++|||+++||+++|+|++||++|||||||||++||+||+|+|+.+.+.. .+++
T Consensus 714 ~~~~l~itg~~~ll~~~p~l~~si~~R~pyv~pLn~~Qv~lL~r~R~~~~~~~-----------------------~~~~ 770 (794)
T PF00311_consen 714 KEMLLAITGQKELLDNNPVLQRSIQLRNPYVDPLNYLQVELLKRLREGDDQQP-----------------------ADPE 770 (794)
T ss_dssp HHHHHHHHT-SSTTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH--------------------------TT-S
T ss_pred HHHHHHHhCCcccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccc-----------------------cCcc
Confidence 99999999999999999999999999999999999999999999998652100 0122
Q ss_pred CCcchhHHHHHHHHHHHhhhccCC
Q 002112 942 YAPGLEDTVILTMKGIAAGMQNTG 965 (965)
Q Consensus 942 ~~~~l~~~l~~TingIAaGlrnTG 965 (965)
+++.+.++|++|||||||||||||
T Consensus 771 ~~~~~~~~l~~tingIAaglrnTG 794 (794)
T PF00311_consen 771 EDERLEDALLLTINGIAAGLRNTG 794 (794)
T ss_dssp S-CCHHHHHHHHHHHHHHHHT---
T ss_pred cchHHHHHHHHHHHHHHHHcccCC
Confidence 367799999999999999999999
No 5
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=100.00 E-value=1.9e-81 Score=715.15 Aligned_cols=319 Identities=20% Similarity=0.234 Sum_probs=274.2
Q ss_pred hCCCcchhhHHhccCCChhhHHHHHHHHHHcC--CC----------CCCccccccCChHHHhchHHHHHHHhccHHHHhh
Q 002112 517 ELPADSFGAYIISMATAPSDVLAVELLQRECR--VK----------QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNR 584 (965)
Q Consensus 517 ~~~~~~~~~yIISmt~sasDvL~vl~L~ke~G--l~----------~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~ 584 (965)
..++++|+.||||||+++||||+|++|+|++| +. +.|+|||||||++||.||+.||++||++|.++.
T Consensus 116 ~~~~~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~- 194 (494)
T PRK13655 116 SFYTQPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGEFEPKEIEVIPLFEDADALLNADEILEEYLKAKKPHG- 194 (494)
T ss_pred hcCchhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCCCCcCCcceECCcCCHHHHHhHHHHHHHHHhchhhcC-
Confidence 34578999999999999999999999999998 52 479999999999999999999999999976654
Q ss_pred cCCeeEEEEeeccCCcchhhHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCc--hhhhhhcCCCCcccCce
Q 002112 585 ISGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGP--THLAILSQPPDTIHGSL 662 (965)
Q Consensus 585 l~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~va~~~gV~l~~FHGRGGsvgRGGGP--t~~ailaqP~gs~~g~i 662 (965)
+.|||||||||||||||+++|+|++|+||++|.++|+++||++++|||||||||||||| ++++|++||+ |.+
T Consensus 195 --~~qeVmlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~fhGrGg~~~RGGgpp~~~~ail~q~~----g~~ 268 (494)
T PRK13655 195 --KYLRVFLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYPILGVGSLPFRGHLSPENLENVLEEYP----GVY 268 (494)
T ss_pred --CeeEEEEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEEeccCCCCCCCCCCChHHHHHHHhCCC----CCe
Confidence 78999999999999999999999999999999999999999999999999999999998 8899999998 559
Q ss_pred eeecccchhhhhcCChhHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhcCCchHHHHHhhCch
Q 002112 663 RVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSIVFQEPRFVEYFRLATPE 742 (965)
Q Consensus 663 r~TeQGEvI~~kyg~~~~A~r~Le~~~aa~l~~sl~~~~~~~~~~~~~m~~ls~~s~~~Yr~lv~~~p~F~~yF~~aTPi 742 (965)
|+|||| +.||+.|. ..+...+.+++++...++..++++|+++|++|++.|+++||++|+++|+|++||+++||.
T Consensus 269 r~TeQg---a~rY~~~~---e~~~~av~~~~~~~~~~p~~~~~~~~~~m~~la~~s~~~Yr~~V~~~~~fv~yf~~~tP~ 342 (494)
T PRK13655 269 TFTVQS---AFRYDYPY---EEVKKAIEEINEKLIAPPRILSEEDKEELLEIIEKYSERYQSQIEKLADTINRVAKLIPK 342 (494)
T ss_pred EEEecc---ccccCCCH---HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHcCcH
Confidence 999999 49999996 223333344457777777777899999999999999999999999999999999999999
Q ss_pred hHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhhccccchhhHHHHHHHHHHhCCCcHHHHHHHHhhChhHHHHHHH
Q 002112 743 MEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIKNLHMLQEMYNLWPFFRVTIDL 822 (965)
Q Consensus 743 ~ei~~lnIGSRPakR~~~~~l~dLRAIPWVFaWtQ~R~~lP~WyGvGsAL~~~~~~~~~~~~~L~~my~~wpfF~~~ldn 822 (965)
.+++.|||||||+||+. +++++||||||||||+|+| ++|+|||+|+||+.+++++ ++.|.++|..
T Consensus 343 ~r~r~L~iGsrp~~R~~-~gie~lRAIpwvfAw~q~r-~~P~wlG~g~aL~~~~~~~---ld~l~~~yp~---------- 407 (494)
T PRK13655 343 RRDRKLHIGLFGYSRSV-GGVSLPRAISFTGALYSIG-LPPELIGAGRLLELAKEDD---LDILLENYPN---------- 407 (494)
T ss_pred HHHhhccccCCCCCCCC-CCCCCCCccCchhhhhhCC-CChHHHhHHHHHHHHHHhH---HHHHHHHhhh----------
Confidence 99999999999999985 7799999999999999999 9999999999999998744 8999998865
Q ss_pred HHHHHHhcCHHHHHHHhhccCCccchH-H-HHHHHHHHHHHHHHHHHHhCCC
Q 002112 823 VEMVFAKGDPGIAALYDKLLVSEELQP-F-GEKLRANYAETKSLLLQVAGHR 872 (965)
Q Consensus 823 ~em~LaKaD~~Ia~~Y~~l~~d~~~~~-i-~~~i~~E~~~T~~~vl~itg~~ 872 (965)
.|.|+.-+..|.+. +... + -+.+.+|.....+.+.++.|-+
T Consensus 408 -----l~~dl~~a~~y~n~----~~~~~~~~~~~~~~~~~di~~~~~~~~~~ 450 (494)
T PRK13655 408 -----LKKDLEFAARFFNP----EVAEKLIDEETIAEIKEDIDEAKEILGLE 450 (494)
T ss_pred -----HHHHHHHHHHhcCH----HHHHHhccchhHHHHHHHHHHHHHHhCCC
Confidence 45555555555532 1111 0 1223456666666677777653
No 6
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=100.00 E-value=5.5e-50 Score=457.76 Aligned_cols=305 Identities=21% Similarity=0.258 Sum_probs=242.5
Q ss_pred HHHHHHHHHHHHHH-------h-CCCc--chhhHHhccCCChhhHHHHHHHHHHcCC---------------------CC
Q 002112 503 EEIADVLDTFHVIS-------E-LPAD--SFGAYIISMATAPSDVLAVELLQRECRV---------------------KQ 551 (965)
Q Consensus 503 ~~~~e~l~~f~~i~-------~-~~~~--~~~~yIISmt~sasDvL~vl~L~ke~Gl---------------------~~ 551 (965)
.+.+-+++++..|- . .+.. .|--.|||||+++||||+|+.|+|++|+ .+
T Consensus 93 ~e~k~l~etl~si~~~~d~a~~~~~~~~~pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~~ 172 (506)
T TIGR02751 93 AEAKLLLETLESIPRNYDVAREFYDERIAPIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKPK 172 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCCC
Confidence 44455555555542 2 2445 7788899999999999999999999985 24
Q ss_pred CCccccccCChHHHhchHHHHHHHhccHHHHhhc-CCeeEEEEeeccCCcchhhHhHHHHHHHHHHHHHHHHHHhCCeEE
Q 002112 552 PLRVVPLFEKLADLEAAPASVARLFSIDWYRNRI-SGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLT 630 (965)
Q Consensus 552 ~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l-~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~va~~~gV~l~ 630 (965)
.|+|||||||++||.||++||+++|+ ++ .+.|+||||||||+||+|+++|+|++|+||++|.++|+++||+++
T Consensus 173 ~i~VIPLFEt~~dL~~a~~Il~~~l~------~~~~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~ 246 (506)
T TIGR02751 173 KIRVIPLIEDKDSLLNADEIVKEYAE------AHEPEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIY 246 (506)
T ss_pred CcCeecCcCCHHHHHhHHHHHHHHHH------hcCcCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 78999999999999999999999998 44 567999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCC-chhhh-hhcCCCCcccCceeeecccchhhhhcCChhHHHHHHHHHHHHHH---HccCCCCCCCCH
Q 002112 631 MFHGRGGTVGRGGG-PTHLA-ILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATL---EHGMHPPVSPKP 705 (965)
Q Consensus 631 ~FHGRGGsvgRGGG-Pt~~a-ilaqP~gs~~g~ir~TeQGEvI~~kyg~~~~A~r~Le~~~aa~l---~~sl~~~~~~~~ 705 (965)
+|||||||+||||| |.+.+ |++||| |.+|+|||| ++||++|. |++++|++ ++...+++.+.+
T Consensus 247 pfhGrGgspfRGGg~P~n~a~il~qpp----G~~t~TeQs---afRYd~p~------e~v~~Av~~~~~a~~~~~~~~~~ 313 (506)
T TIGR02751 247 PIIGAGSLPFRGHLSPENIERVLDEYP----GVYTFTVQS---AFKYDYPR------EEVVAAIRRINEKLPNAPPILID 313 (506)
T ss_pred EEeecCCCCcCCCCChhhHHHHHhcCC----CceEEeeec---hhhcCCCH------HHHHHHHHHHHhcccCCCCCCCH
Confidence 99999999999999 99999 999999 779999999 99999999 99999999 444445556678
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCchHHHHHhhCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhhccccch
Q 002112 706 EWRALMDEMAVIATKEYRSIVFQEPRFVEYFRLATPEMEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVW 785 (965)
Q Consensus 706 ~~~~~m~~ls~~s~~~Yr~lv~~~p~F~~yF~~aTPi~ei~~lnIGSRPakR~~~~~l~dLRAIPWVFaWtQ~R~~lP~W 785 (965)
+|+++|+.+++.|+++||++|..--+.+.+....-|=.==-.+-||-===+|. .++++=-|||-++.|| -|=-+-|-.
T Consensus 314 e~~e~m~~ia~~s~~~Yr~~V~~la~~in~ia~~iP~rR~RklhiGlfgYsR~-~~~~~lPRAI~Ft~al-YSiG~PPel 391 (506)
T TIGR02751 314 EEEEIIVEIIEIYAKRYQKIIEKLAPTINRIASYIPKRRDRKLHVGLFGYSRS-VGGVSLPRAIKFTGAL-YSIGLPPEL 391 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccCcccccC-CCCCCCCchhhhhhhh-hhcCCChHH
Confidence 89999999999999999999966555555555444433333333321111222 1346778999999999 677788999
Q ss_pred hhHHHHHHHHHHhCCCcHHHHHHHHhhChhHHHHHHHHHHHHHhcCHHHHHHH
Q 002112 786 LGFGAAFKHVIQKDIKNLHMLQEMYNLWPFFRVTIDLVEMVFAKGDPGIAALY 838 (965)
Q Consensus 786 yGvGsAL~~~~~~~~~~~~~L~~my~~wpfF~~~ldn~em~LaKaD~~Ia~~Y 838 (965)
.|+| +|.++.+++ ++.|.+.|.. +-+-++-+..-.|++.++.|
T Consensus 392 iG~~-~L~~~~~~~---l~~l~~~yp~------l~~dl~~a~~y~n~~~~~~l 434 (506)
T TIGR02751 392 IGIG-SLSELDEDD---LEVIKELYPN------LRSDLSFAARYLNPESADSL 434 (506)
T ss_pred hChh-hhhhcchhH---HHHHHHHhhh------HHHHHHHHHHhcCHHHHHHH
Confidence 9999 899876444 7778776654 33444444445555555544
No 7
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=99.39 E-value=7.3e-12 Score=144.34 Aligned_cols=292 Identities=22% Similarity=0.236 Sum_probs=192.9
Q ss_pred CCcchhhHHhccCCChhhHHHHHHHHH----------------HcCCC---CCCccccccCChHHHhchHHHHHHHhccH
Q 002112 519 PADSFGAYIISMATAPSDVLAVELLQR----------------ECRVK---QPLRVVPLFEKLADLEAAPASVARLFSID 579 (965)
Q Consensus 519 ~~~~~~~yIISmt~sasDvL~vl~L~k----------------e~Gl~---~~l~VvPLFETi~DL~~a~~Im~~ll~~p 579 (965)
+...|--.|.-||+|+.+|..|+-..+ |.+.. ..++|+||||+.+.+-|+++|+++++
T Consensus 117 ~~~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~--- 193 (491)
T PF14010_consen 117 DVQPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNADEILEEYL--- 193 (491)
T ss_dssp SS-S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEEEEEE-SHHHHHTHHHHHHHHH---
T ss_pred cCcchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceEeeccccHHHHhcHHHHHHHHH---
Confidence 456788889999999999999965533 23322 58999999999999999999999988
Q ss_pred HHHhhc---CCeeEEEEeeccCCcchhhHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCch--hhhhhcCC
Q 002112 580 WYRNRI---SGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPT--HLAILSQP 654 (965)
Q Consensus 580 ~yr~~l---~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~va~~~gV~l~~FHGRGGsvgRGGGPt--~~ailaqP 654 (965)
++. -..|.|+||-|||+--.|.++|..+.=-|-.+|.++.++.||++--.=|-|..+-|||=.- -..++.+=
T Consensus 194 ---~~~g~~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~IyPIiG~GS~PFRG~l~p~~~~~~~~EY 270 (491)
T PF14010_consen 194 ---KDKGRDPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPIYPIIGVGSPPFRGGLSPPNVERVLEEY 270 (491)
T ss_dssp ---HHTT---SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-BSSGGGT---TTGHHHHHHHT
T ss_pred ---HHhcCCchheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCceeeeeccCCCCcCCCCChHhHHHHHHhc
Confidence 333 2579999999999999999999999999999999999999999999999999999999432 22344443
Q ss_pred CCcccCceeeecccchhhhhcCChhHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhcCCchHH
Q 002112 655 PDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSIVFQEPRFVE 734 (965)
Q Consensus 655 ~gs~~g~ir~TeQGEvI~~kyg~~~~A~r~Le~~~aa~l~~sl~~~~~~~~~~~~~m~~ls~~s~~~Yr~lv~~~p~F~~ 734 (965)
.|--.+|.|-- .||..|.--..+.=.. +....-..+.....+..+++-.+.+.+.+.|++.|..--+.+
T Consensus 271 ----~gv~T~TIQSA---frYD~p~~~v~~ai~~---l~~~~~~~p~~~~~ee~~~~~~ii~~~s~~Y~~~i~~la~~I- 339 (491)
T PF14010_consen 271 ----PGVYTFTIQSA---FRYDYPYEEVIKAIEK---LNEAPRKKPRIIDEEEEEILLEIIEKYSAEYRSQIEKLAPTI- 339 (491)
T ss_dssp ----TT-SEEEE-HH---HHHTTHHHHHHHHHHH---HHHGGG-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ----CCeeEEEeeeh---hhcCCCHHHHHHHHHH---HHhcccCCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34578999985 9999987654443221 112111123333566678999999999999999885443333
Q ss_pred HHHhhCchhHhhhCCCCCCCCccCCC------------CCCCCccccchhhhhhhhhccccchhhHHHHHHHHHHhCCCc
Q 002112 735 YFRLATPEMEYGRMNIGSRPSKRKPS------------GGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIKN 802 (965)
Q Consensus 735 yF~~aTPi~ei~~lnIGSRPakR~~~------------~~l~dLRAIPWVFaWtQ~R~~lP~WyGvGsAL~~~~~~~~~~ 802 (965)
++++.+= |.+|... +++.=-|||.++.|| -|=-+-|...|+|+.++... + .
T Consensus 340 --------n~va~~v----P~rR~RklhiGlfgYsR~~~~~~LPRAI~Ftaal-YSiGlPPEllg~~~ll~l~~-~---~ 402 (491)
T PF14010_consen 340 --------NRVARYV----PKRRDRKLHIGLFGYSRSVGGVNLPRAITFTAAL-YSIGLPPELLGLGRLLELSK-E---E 402 (491)
T ss_dssp --------HHHHTTS-------S-B----------EEE--HE---HHHHHHHH-HHTT--GGGTTHHHHHHHHH-H---H
T ss_pred --------HHHHHhC----CchhhHHhhhcccccccccCCccCcchhhhhhhH-HhcCCCHHHhchHHHHHHhH-H---H
Confidence 3444322 4444221 234567999999999 66777899999999997654 2 4
Q ss_pred HHHHHHHHhhChhHHHHHHHHHHHHHhcCHHHHHHHhhccCCcc-c-hHHHHHHHHHHH
Q 002112 803 LHMLQEMYNLWPFFRVTIDLVEMVFAKGDPGIAALYDKLLVSEE-L-QPFGEKLRANYA 859 (965)
Q Consensus 803 ~~~L~~my~~wpfF~~~ldn~em~LaKaD~~Ia~~Y~~l~~d~~-~-~~i~~~i~~E~~ 859 (965)
++.|.+.|.+ -|.|+.-+..|.+.-.... . ..++..|.+..+
T Consensus 403 l~~l~~~yp~---------------l~~Dl~~a~~y~n~~~~~~~~~~~~~~~v~ed~~ 446 (491)
T PF14010_consen 403 LDVLLEYYPN---------------LKEDLEFAARYFNPEVAELYLPEEAVKEVKEDID 446 (491)
T ss_dssp HHHHHHHSTT---------------HHHHHHHHHTT--SSTTTTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHh---------------HHHHHHHHHHhcChhhhhhcccHHHHHHHHHHHH
Confidence 8888888877 7889999988887432221 1 145555555444
No 8
>COG1892 Phosphoenolpyruvate carboxylase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=98.88 E-value=7.8e-08 Score=108.62 Aligned_cols=298 Identities=21% Similarity=0.212 Sum_probs=211.3
Q ss_pred CHHHHHHHHHHHHHHhC---------CCcchhhHHhccCCChhhHHHHHHHH---------HHcCCC---------C-CC
Q 002112 502 TEEIADVLDTFHVISEL---------PADSFGAYIISMATAPSDVLAVELLQ---------RECRVK---------Q-PL 553 (965)
Q Consensus 502 s~~~~e~l~~f~~i~~~---------~~~~~~~yIISmt~sasDvL~vl~L~---------ke~Gl~---------~-~l 553 (965)
.-+.+-+++++.+|+.. ....|--.|.-||+|+..++.|.-.. ++.|.. + -|
T Consensus 95 ~~erkll~e~l~~i~~s~d~a~~f~~d~~pIfEVIlPMTts~~el~~v~~~y~~~v~~~~~~~~~~~vk~~vge~~P~~I 174 (488)
T COG1892 95 NAERKLLLETLESIARSYDYARVFYGDVAPIFEVILPMTTSVEELLRVHEYYRDFVRGRLELEDGVTVKEWVGEFIPKLI 174 (488)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHhhccccccceeEecccCCCHHHHHHHHHHHHHHHcchhHhhcCchHhhhhccccHHHH
Confidence 34555666777777742 13467778999999999999996543 333431 2 68
Q ss_pred ccccccCChHHHhchHHHHHHHhccHHHHhhc-CCeeEEEEeeccCCcchhhHhHHHHHHHHHHHHHHHHHHhCCeEEEe
Q 002112 554 RVVPLFEKLADLEAAPASVARLFSIDWYRNRI-SGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMF 632 (965)
Q Consensus 554 ~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l-~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~va~~~gV~l~~F 632 (965)
.|+||||+++.|.++..|..... .-- -..|.|-||-||+.-.-|.++|....=+|-.+|.++-++-||++--.
T Consensus 175 eviPl~e~~~~ll~a~~i~~~y~------~g~~~e~~RVFLarSDpAmnyG~laA~l~~K~AL~~l~el~ee~~~~i~PI 248 (488)
T COG1892 175 EVIPLFEDRESLLKAALIVGEYA------EGRDPEYLRVFLARSDPAMNYGHLAAVLAVKKALSELSELSEELGVPIYPI 248 (488)
T ss_pred hhhHhHhhHHHHHHHHHHHHHHH------hcCCchhheeeeecCchhhccchHHHHHHHHHHHHHHHHHHhhcCCcccce
Confidence 89999999999999999887632 211 34688999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCchhh--hhhcCCCCcccCceeeecccchhhhhcCCh-hHHHHHHHHHHHHHHHccCCCCCCCCHHHHH
Q 002112 633 HGRGGTVGRGGGPTHL--AILSQPPDTIHGSLRVTVQGEVIEQSFGEE-HLCFRTLQRFSAATLEHGMHPPVSPKPEWRA 709 (965)
Q Consensus 633 HGRGGsvgRGGGPt~~--ailaqP~gs~~g~ir~TeQGEvI~~kyg~~-~~A~r~Le~~~aa~l~~sl~~~~~~~~~~~~ 709 (965)
-|-|..+-|||---+. ..+.+=+| --..|.|.- .||..+ .-+.+-.+.+-+ .. ++ ...+...+
T Consensus 249 ~G~Gs~PFRG~l~P~n~e~~~~EY~g----v~T~TvQSa---fkYD~~~~~v~~~i~~i~~-----~~-~~-~~s~~~~e 314 (488)
T COG1892 249 LGVGSLPFRGHLRPENAENVLEEYAG----VYTYTVQSA---FKYDHEYGDVVKAIERIKS-----VK-RE-RLSAYEEE 314 (488)
T ss_pred ecCCCCCcCCCCChhhhHHHHHHcCC----ceEEEEeec---ccccCCHHHHHHHHHHHHh-----hc-cc-ccccccHH
Confidence 9999999999755443 35555444 478999986 899875 344454444222 11 11 12333345
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchHHHHHhhCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhhccccchhhHH
Q 002112 710 LMDEMAVIATKEYRSIVFQEPRFVEYFRLATPEMEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFG 789 (965)
Q Consensus 710 ~m~~ls~~s~~~Yr~lv~~~p~F~~yF~~aTPi~ei~~lnIGSRPakR~~~~~l~dLRAIPWVFaWtQ~R~~lP~WyGvG 789 (965)
..-.+...-++.||..|..--+-+.=....-|-.---+|.||++==+|. -+.++=-|||-++.|| -+=-+-|...|+|
T Consensus 315 ~~~~~i~~~~~~Y~~~i~~la~~Inrla~~iP~rR~RklHvGlfGYsR~-~g~~~LPRAI~fTasl-YsiG~PPeLlG~~ 392 (488)
T COG1892 315 ELLAVITIYEEEYRRQIRILAGTINRLADRIPDRRDRKLHVGLFGYSRS-IGELSLPRAIKFTASL-YSIGVPPELLGTG 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhcCccccccc-CCcccCcchheeehhh-hhcCCCHHHhcch
Confidence 5666777778899987744333333333333333334466777666664 2356778999999999 5667789999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHhhChhHHHHHHHHHHHHHhcCHHHHHHHhhc
Q 002112 790 AAFKHVIQKDIKNLHMLQEMYNLWPFFRVTIDLVEMVFAKGDPGIAALYDKL 841 (965)
Q Consensus 790 sAL~~~~~~~~~~~~~L~~my~~wpfF~~~ldn~em~LaKaD~~Ia~~Y~~l 841 (965)
.... ++ +.++.+.+.|.+ ..-|++-|..|.+.
T Consensus 393 ~ls~---~d--~~~~~v~e~yp~---------------~~~dL~fA~ry~~~ 424 (488)
T COG1892 393 ALSN---DD--ADLDVVSEYYPN---------------LVEDLEFAARYFNP 424 (488)
T ss_pred hccc---cc--chHHHHHHHhhh---------------HHHHHHHHHHhcCH
Confidence 8875 11 247788888776 56677777777654
No 9
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=96.24 E-value=0.016 Score=62.02 Aligned_cols=161 Identities=14% Similarity=0.218 Sum_probs=106.1
Q ss_pred HHHHHHHhcCCccccccccccch------HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhcC--CCCCCCCCCCCCH
Q 002112 432 DFLRQVSTFGLSLVRLDIRQESE------RHTDVIDAITKHLGIGSYREWSEEKRQEWLLSELRG--KRPLFGSDLPKTE 503 (965)
Q Consensus 432 ~lir~v~~FGfhla~LDiRQ~S~------~H~~a~~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~--~rpl~~~~~~~s~ 503 (965)
.++..+...||..+-+|+ +|+. .-..-+.+++.. +. ..+. ..+++.....-+.
T Consensus 12 ~~~~~a~~~g~D~vilDl-Ed~~~~~~K~~ar~~~~~~~~~-----------------~~-~~~~~~~~~~VRvn~~~~~ 72 (221)
T PF03328_consen 12 KMLEKAAASGADFVILDL-EDGVPPDEKDEAREDLAEALRS-----------------IR-AARAAGSEIIVRVNSLDSP 72 (221)
T ss_dssp HHHHHHHTTCSSEEEEES-STTSSGGGHHHHHHHHHHHHHH-----------------HH-HHTTSSSEEEEE-SSTTCH
T ss_pred HHHHHHHhcCCCEEEEeC-cccCCcccchhhHHHHHHHHHh-----------------hc-ccccccccceecCCCCCcc
Confidence 466777888999999998 6666 111111121110 00 0111 1233222222234
Q ss_pred HHHHHHHHHHHHHhCCCcchhhHHhccCCChhhHHHHHHHHHHcCC-----CCCCccccccCChHHHhchHHHHHHHhcc
Q 002112 504 EIADVLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQRECRV-----KQPLRVVPLFEKLADLEAAPASVARLFSI 578 (965)
Q Consensus 504 ~~~e~l~~f~~i~~~~~~~~~~yIISmt~sasDvL~vl~L~ke~Gl-----~~~l~VvPLFETi~DL~~a~~Im~~ll~~ 578 (965)
...+-|. +...+.+ ..+|.|++++.|+..+.-+++..-. ...+.|+|+.||.+.++|+++|+ +.
T Consensus 73 ~~~~Dl~----~l~~g~~---gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~----a~ 141 (221)
T PF03328_consen 73 HIERDLE----ALDAGAD---GIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIA----AV 141 (221)
T ss_dssp HHHHHHH----HHHTTSS---EEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHH----TS
T ss_pred hhhhhhh----hcccCCC---eeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhc----cc
Confidence 4444333 3334444 5699999999999999999886522 24789999999999999999998 22
Q ss_pred HHHHhhcCCeeEEEEeeccCCcchhhHh--HHHHHHHHHHHHHHHHHHhCCeE
Q 002112 579 DWYRNRISGKQEVMIGYSDSGKDAGRLS--AAWQLYKTQEELVKVAKQYGVKL 629 (965)
Q Consensus 579 p~yr~~l~~~QeVMlGYSDS~KDgG~la--a~W~Ly~Aq~~L~~va~~~gV~l 629 (965)
.+.--|++|..|=+.+-|.-. ....++.+..+++..|+++|+..
T Consensus 142 -------~~v~~l~~G~~Dls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~ 187 (221)
T PF03328_consen 142 -------PGVDGLFFGPADLSASLGIPGQPDHPEVLEARSKVVLAARAAGKPA 187 (221)
T ss_dssp -------TTEEEEEE-HHHHHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEE
T ss_pred -------CCeeEEEeCcHHHHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCe
Confidence 367889999999999999874 56789999999999999999843
No 10
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=95.61 E-value=0.028 Score=61.79 Aligned_cols=157 Identities=15% Similarity=0.175 Sum_probs=99.2
Q ss_pred HHHHhcCCccccccccccchHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHH
Q 002112 435 RQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLLSELRGKRPLFGSDLPKTEEIADVLDTFHV 514 (965)
Q Consensus 435 r~v~~FGfhla~LDiRQ~S~~H~~a~~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~e~l~~f~~ 514 (965)
..+..-||.++-+|. ||+..-.+.+..++..+.. ...-|++.....-....+.+|
T Consensus 34 e~~a~~G~D~v~iD~-EHg~~~~~~~~~~i~a~~~-------------------~g~~~lVRvp~~~~~~i~r~L----- 88 (256)
T PRK10558 34 EVLGLAGFDWLVLDG-EHAPNDVSTFIPQLMALKG-------------------SASAPVVRVPTNEPVIIKRLL----- 88 (256)
T ss_pred HHHHhcCCCEEEEcc-ccCCCCHHHHHHHHHHHhh-------------------cCCCcEEECCCCCHHHHHHHh-----
Confidence 335567999999998 8888777777776654321 111222211111111111111
Q ss_pred HHhCCCcchhhHHhccCCChhhHHHHHHHHHHc--CC----------------------CCCCccccccCChHHHhchHH
Q 002112 515 ISELPADSFGAYIISMATAPSDVLAVELLQREC--RV----------------------KQPLRVVPLFEKLADLEAAPA 570 (965)
Q Consensus 515 i~~~~~~~~~~yIISmt~sasDvL~vl~L~ke~--Gl----------------------~~~l~VvPLFETi~DL~~a~~ 570 (965)
+.|..+ .|+.|.+++.++=++.-.+|.. |. ...+.|+|+.||.+.++|+++
T Consensus 89 --D~Ga~g---iivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IEt~~av~ni~e 163 (256)
T PRK10558 89 --DIGFYN---FLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIESQQGVDNVDA 163 (256)
T ss_pred --CCCCCe---eeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEECCHHHHHHHHH
Confidence 222222 2555555555555555554442 10 136779999999999999999
Q ss_pred HHHHHhccHHHHhhcCCeeEEEEeeccCCcchhhHh--HHHHHHHHHHHHHHHHHHhCCeEEEe
Q 002112 571 SVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLS--AAWQLYKTQEELVKVAKQYGVKLTMF 632 (965)
Q Consensus 571 Im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~la--a~W~Ly~Aq~~L~~va~~~gV~l~~F 632 (965)
|+.. .+.--||+|..|=+.+-|... ..=.+..+..++...|+++|+.+-+|
T Consensus 164 I~av-----------~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~~ 216 (256)
T PRK10558 164 IAAT-----------EGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGIL 216 (256)
T ss_pred HhCC-----------CCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEEc
Confidence 9853 357789999999888888642 22368889999999999999988544
No 11
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=94.91 E-value=0.05 Score=59.60 Aligned_cols=157 Identities=13% Similarity=0.151 Sum_probs=98.6
Q ss_pred HHHHhcCCccccccccccchHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHH
Q 002112 435 RQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQEWLLSELRGKRPLFGSDLPKTEEIADVLDTFHV 514 (965)
Q Consensus 435 r~v~~FGfhla~LDiRQ~S~~H~~a~~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~e~l~~f~~ 514 (965)
..+...||.++-+|. ||+..-.+.+..++..+.. ....|++..........+.+|
T Consensus 27 e~~a~~G~D~v~iD~-EHg~~~~~~~~~~~~a~~~-------------------~g~~~~VRvp~~~~~~i~r~L----- 81 (249)
T TIGR03239 27 EVLGLAGFDWLLLDG-EHAPNDVLTFIPQLMALKG-------------------SASAPVVRPPWNEPVIIKRLL----- 81 (249)
T ss_pred HHHHhcCCCEEEEec-ccCCCCHHHHHHHHHHHhh-------------------cCCCcEEECCCCCHHHHHHHh-----
Confidence 334567899999998 8888777777776654221 111223211111111111111
Q ss_pred HHhCCCcchhhHHhccCCChhhHHHHHHHHHHc--C----------------------CCCCCccccccCChHHHhchHH
Q 002112 515 ISELPADSFGAYIISMATAPSDVLAVELLQREC--R----------------------VKQPLRVVPLFEKLADLEAAPA 570 (965)
Q Consensus 515 i~~~~~~~~~~yIISmt~sasDvL~vl~L~ke~--G----------------------l~~~l~VvPLFETi~DL~~a~~ 570 (965)
+.|..+ .|+.|++++.|+-++.-.+|.. | ....+.|+|+.||.+.++|+++
T Consensus 82 --D~Ga~g---IivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~av~n~~e 156 (249)
T TIGR03239 82 --DIGFYN---FLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQKGVDNVDE 156 (249)
T ss_pred --cCCCCE---EEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCHHHHHhHHH
Confidence 122222 2555666666555555444432 1 0146779999999999999999
Q ss_pred HHHHHhccHHHHhhcCCeeEEEEeeccCCcchhhHh--HHHHHHHHHHHHHHHHHHhCCeEEEe
Q 002112 571 SVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLS--AAWQLYKTQEELVKVAKQYGVKLTMF 632 (965)
Q Consensus 571 Im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~la--a~W~Ly~Aq~~L~~va~~~gV~l~~F 632 (965)
|+.. .+.--||+|-.|=+.+-|... ..=++..|..++...|+++|+.+-+|
T Consensus 157 I~av-----------~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~ 209 (249)
T TIGR03239 157 IAAV-----------DGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGIL 209 (249)
T ss_pred HhCC-----------CCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEc
Confidence 9853 356789999999888777643 22368889999999999999998654
No 12
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=93.87 E-value=0.21 Score=59.63 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=87.1
Q ss_pred HHHHHhCCCcchhhHHhccCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEE
Q 002112 512 FHVISELPADSFGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEV 591 (965)
Q Consensus 512 f~~i~~~~~~~~~~yIISmt~sasDvL~vl~L~ke~Gl~~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeV 591 (965)
++.+...+ +....+|.++++.||-.+--+..++|. ..+.|+|+.||.+.++|..+|+.. . | -|
T Consensus 177 l~~~~~~~---~d~I~lskV~sa~dv~~l~~~l~~~~~-~~~~Iia~IEt~~av~nl~eI~~~--~-d----------gi 239 (473)
T TIGR01064 177 LKFGVEQG---VDMVAASFVRTAEDVLEVREVLGEKGA-KDVKIIAKIENQEGVDNIDEIAEA--S-D----------GI 239 (473)
T ss_pred HHHHHHCC---CCEEEECCCCCHHHHHHHHHHHHhcCC-CCceEEEEECCHHHHHhHHHHHhh--C-C----------cE
Confidence 34444444 344789999999999999777766663 257899999999999999999976 1 1 79
Q ss_pred EEeeccCCcchhhHhHHHHHHHHHHHHHHHHHHhCCeEEEecC-------CCCCCCCCCC
Q 002112 592 MIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHG-------RGGTVGRGGG 644 (965)
Q Consensus 592 MlGYSDS~KDgG~laa~W~Ly~Aq~~L~~va~~~gV~l~~FHG-------RGGsvgRGGG 644 (965)
|+|-.|=+.+-|. =.+..+|.+++..|+++|+.+.. ++ .-..+-|.-.
T Consensus 240 ~iG~gDL~~~lg~----~~l~~~~~~ii~aaraag~pvi~-atqmLeSM~~~p~PTRAe~ 294 (473)
T TIGR01064 240 MVARGDLGVEIPA----EEVPIAQKKMIRKCNRAGKPVIT-ATQMLDSMIKNPRPTRAEV 294 (473)
T ss_pred EEchHHHHhhcCc----HHHHHHHHHHHHHHHHcCCCEEE-EChhhhhhhcCCCCCcccH
Confidence 9999999999993 36788999999999999998664 44 4456666553
No 13
>PRK08187 pyruvate kinase; Validated
Probab=90.01 E-value=0.76 Score=55.13 Aligned_cols=112 Identities=20% Similarity=0.138 Sum_probs=85.1
Q ss_pred hhhHHhccCCChhhHHHHHHHHHHcCC--CCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCc
Q 002112 523 FGAYIISMATAPSDVLAVELLQRECRV--KQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGK 600 (965)
Q Consensus 523 ~~~yIISmt~sasDvL~vl~L~ke~Gl--~~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYSDS~K 600 (965)
+-...+|+++++.||..+.-+..+.|. ...+.|+|..||...++|.++|+..--. ...--||+|--|=+-
T Consensus 325 vD~I~lSfV~saeDV~~l~~~L~~~~~~~~~~~~IIaKIET~~gv~Nl~eI~~~ad~--------~~v~GImiARGDLgv 396 (493)
T PRK08187 325 ADLVGYSFVQSPGDVEALQAALAARRPDDWRKLGLVLKIETPRAVANLPELIVQAAG--------RQPFGVMIARGDLAV 396 (493)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHhCc--------CCCcEEEEEchHhhh
Confidence 344789999999999999877777662 2478999999999999999999975211 123469999999998
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCch
Q 002112 601 DAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPT 646 (965)
Q Consensus 601 DgG~laa~W~Ly~Aq~~L~~va~~~gV~l~~FHGRGGsvgRGGGPt 646 (965)
+-|+-. +-..|++++..|+.+|+.++.===-=.|+-..+=||
T Consensus 397 Eig~e~----~p~~Qk~II~~craagkpvI~ATQmLESM~~~p~PT 438 (493)
T PRK08187 397 EIGFER----LAEMQEEILWLCEAAHVPVIWATQVLEGLVKKGLPS 438 (493)
T ss_pred hcCccc----ChHHHHHHHHHHHHhCCCeEEEchhhHhhccCCCCc
Confidence 888633 444599999999999999876333334555555566
No 14
>PRK09206 pyruvate kinase; Provisional
Probab=89.76 E-value=1.1 Score=53.52 Aligned_cols=99 Identities=13% Similarity=0.128 Sum_probs=81.5
Q ss_pred HHHHHhCCCcchhhHHhccCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEE
Q 002112 512 FHVISELPADSFGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEV 591 (965)
Q Consensus 512 f~~i~~~~~~~~~~yIISmt~sasDvL~vl~L~ke~Gl~~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeV 591 (965)
++...+.+-+. +-.|..++++||.++--+..+.|. ..+.|++-.||.+.++|.++|++. .=.|
T Consensus 178 i~f~~~~~vD~---ia~SFVr~~~Dv~~~r~~l~~~~~-~~~~iiaKIEt~eav~nldeIl~~-------------~DgI 240 (470)
T PRK09206 178 LIFGCEQGVDF---VAASFIRKRSDVLEIREHLKAHGG-ENIQIISKIENQEGLNNFDEILEA-------------SDGI 240 (470)
T ss_pred HHHHHHcCCCE---EEEcCCCCHHHHHHHHHHHHHcCC-CCceEEEEECCHHHHHhHHHHHHh-------------CCEE
Confidence 33334444333 346999999999999887777763 357899999999999999999998 2369
Q ss_pred EEeeccCCcchhhHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002112 592 MIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTM 631 (965)
Q Consensus 592 MlGYSDS~KDgG~laa~W~Ly~Aq~~L~~va~~~gV~l~~ 631 (965)
|+|-.|=+-.-| ...+-.+|+++.+.|+++|+.+..
T Consensus 241 mVaRGDLgvelg----~e~vp~~qk~ii~~~~~~gkpvI~ 276 (470)
T PRK09206 241 MVARGDLGVEIP----VEEVIFAQKMMIEKCNRARKVVIT 276 (470)
T ss_pred EECcchhhhhcC----HHHHHHHHHHHHHHHHHcCCCEEE
Confidence 999999999988 788889999999999999998876
No 15
>PLN02623 pyruvate kinase
Probab=89.69 E-value=1 Score=54.78 Aligned_cols=87 Identities=15% Similarity=0.265 Sum_probs=77.0
Q ss_pred HHhccCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCcchhhH
Q 002112 526 YIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRL 605 (965)
Q Consensus 526 yIISmt~sasDvL~vl~L~ke~Gl~~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~l 605 (965)
+-+|..++++||.++--+.+.+|- .+.|++-.||.+.++|.++|++. .=-||+|-.|=+-.-|.
T Consensus 295 ialSFVr~a~DV~~~r~~l~~~~~--~~~iiakIEt~eaVeNldeIl~g-------------~DgImIgrgDLgvelg~- 358 (581)
T PLN02623 295 YAVSFVKDAQVVHELKDYLKSCNA--DIHVIVKIESADSIPNLHSIITA-------------SDGAMVARGDLGAELPI- 358 (581)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCC--cceEEEEECCHHHHHhHHHHHHh-------------CCEEEECcchhhhhcCc-
Confidence 567999999999999888887764 57899999999999999999993 23699999999999997
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002112 606 SAAWQLYKTQEELVKVAKQYGVKLTM 631 (965)
Q Consensus 606 aa~W~Ly~Aq~~L~~va~~~gV~l~~ 631 (965)
..+-.+|+++.+.|+++|+.+..
T Consensus 359 ---~~v~~~qk~Ii~~~~~~gKpviv 381 (581)
T PLN02623 359 ---EEVPLLQEEIIRRCRSMGKPVIV 381 (581)
T ss_pred ---HHHHHHHHHHHHHHHHhCCCEEE
Confidence 78889999999999999998864
No 16
>PRK05826 pyruvate kinase; Provisional
Probab=89.23 E-value=1 Score=53.70 Aligned_cols=91 Identities=14% Similarity=0.240 Sum_probs=77.8
Q ss_pred hhhHHhccCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCcch
Q 002112 523 FGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDA 602 (965)
Q Consensus 523 ~~~yIISmt~sasDvL~vl~L~ke~Gl~~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDg 602 (965)
+.-.++||.+++.|+-++--+..++|- ..+.|++-.||.+.++|..+|++. .=-||+|-.|=+-+-
T Consensus 187 ~d~I~~sfV~saedv~~l~~~l~~~~~-~~~~iiakIEt~eav~nldeI~~~-------------~DgImIgrgDLg~el 252 (465)
T PRK05826 187 VDYIAVSFVRSAEDVEEARRLLREAGC-PHAKIIAKIERAEAVDNIDEIIEA-------------SDGIMVARGDLGVEI 252 (465)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHcCC-cCceEEEEEcCHHHHHhHHHHHHH-------------cCEEEECcchhhhhc
Confidence 445678999999999999877777663 257899999999999999999998 136999999999998
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002112 603 GRLSAAWQLYKTQEELVKVAKQYGVKLTM 631 (965)
Q Consensus 603 G~laa~W~Ly~Aq~~L~~va~~~gV~l~~ 631 (965)
| .-.+..+|+++.+.|+++|..+.+
T Consensus 253 g----~~~v~~~qk~Ii~~c~~~gKpvi~ 277 (465)
T PRK05826 253 P----DEEVPGLQKKIIRKAREAGKPVIT 277 (465)
T ss_pred C----cHhHHHHHHHHHHHHHHcCCCEEE
Confidence 8 457899999999999999997754
No 17
>PTZ00300 pyruvate kinase; Provisional
Probab=88.37 E-value=1.4 Score=52.50 Aligned_cols=95 Identities=14% Similarity=0.100 Sum_probs=80.2
Q ss_pred HHhCCCcchhhHHhccCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEe
Q 002112 515 ISELPADSFGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIG 594 (965)
Q Consensus 515 i~~~~~~~~~~yIISmt~sasDvL~vl~L~ke~Gl~~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlG 594 (965)
.-+.+-+. ..+||.+++.|+-++.-++...|- .+.|+.-.||.+.++|.++|++. .=-||+|
T Consensus 156 ald~gvd~---I~~SfVrsaeDv~~vr~~l~~~~~--~~~IiaKIEt~eav~nldeI~~~-------------~DgImVa 217 (454)
T PTZ00300 156 GVEQGVDM---IFASFIRSAEQVGEVRKALGAKGG--DIMIICKIENHQGVQNIDSIIEE-------------SDGIMVA 217 (454)
T ss_pred HHHCCCCE---EEECCCCCHHHHHHHHHHHHhcCC--CceEEEEECCHHHHHhHHHHHHh-------------CCEEEEe
Confidence 44455444 568999999999999888866663 67899999999999999999954 3469999
Q ss_pred eccCCcchhhHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002112 595 YSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTM 631 (965)
Q Consensus 595 YSDS~KDgG~laa~W~Ly~Aq~~L~~va~~~gV~l~~ 631 (965)
--|=+-.-| ...+-.+|+++.+.|+++|+.+..
T Consensus 218 RGDLgvei~----~e~vp~~Qk~Ii~~~~~~gkpvI~ 250 (454)
T PTZ00300 218 RGDLGVEIP----AEKVVVAQKILISKCNVAGKPVIC 250 (454)
T ss_pred cchhhhhcC----hHHHHHHHHHHHHHHHHcCCCEEE
Confidence 999988888 788889999999999999998875
No 18
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=88.00 E-value=1.1 Score=50.30 Aligned_cols=97 Identities=11% Similarity=0.129 Sum_probs=76.0
Q ss_pred hhhHHhccCCChhhHHHHHHHHHH----cCCC-CCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeecc
Q 002112 523 FGAYIISMATAPSDVLAVELLQRE----CRVK-QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSD 597 (965)
Q Consensus 523 ~~~yIISmt~sasDvL~vl~L~ke----~Gl~-~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYSD 597 (965)
+..+++.|++++.|+-.+.-+.+. .|.. ..+.|+|+.||...+.|+.+|... . .+.--+++|-.|
T Consensus 86 ~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a---~-------~rv~~l~~G~~D 155 (288)
T TIGR01588 86 VDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARA---S-------KRLMGIALGAED 155 (288)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhc---C-------CcceEEEeCHHH
Confidence 445999999999999999756554 3332 367899999999999999999842 1 245669999988
Q ss_pred CCcchhhHhH-H-HHHHHHHHHHHHHHHHhCCeE
Q 002112 598 SGKDAGRLSA-A-WQLYKTQEELVKVAKQYGVKL 629 (965)
Q Consensus 598 S~KDgG~laa-~-W~Ly~Aq~~L~~va~~~gV~l 629 (965)
=+-|-|.-.. . -+++.+..+++..|+.+|+..
T Consensus 156 ls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~ 189 (288)
T TIGR01588 156 YVTDMKTSRSPDGTELFYARCAILHAARAAGIAA 189 (288)
T ss_pred HHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCc
Confidence 8888776442 2 369999999999999999875
No 19
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=87.21 E-value=1.2 Score=49.00 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=71.4
Q ss_pred hhHHhccCCChhhHHHHHHHHHHc--CCC-----------------------CCCccccccCChHHHhchHHHHHHHhcc
Q 002112 524 GAYIISMATAPSDVLAVELLQREC--RVK-----------------------QPLRVVPLFEKLADLEAAPASVARLFSI 578 (965)
Q Consensus 524 ~~yIISmt~sasDvL~vl~L~ke~--Gl~-----------------------~~l~VvPLFETi~DL~~a~~Im~~ll~~ 578 (965)
...||.|.+|+.|+-++.-.+|+. |.. ..+-|+|+.||.+.++|+++|+..
T Consensus 86 ~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~av~n~~eI~a~---- 161 (249)
T TIGR02311 86 QTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETREALDNLEEIAAV---- 161 (249)
T ss_pred CEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHHHHHHHHHHHCC----
Confidence 445667777777777776666643 211 146699999999999999999952
Q ss_pred HHHHhhcCCeeEEEEeeccCCcchhhHh-HH-HHHHHHHHHHHHHHHHhCCeEEE
Q 002112 579 DWYRNRISGKQEVMIGYSDSGKDAGRLS-AA-WQLYKTQEELVKVAKQYGVKLTM 631 (965)
Q Consensus 579 p~yr~~l~~~QeVMlGYSDS~KDgG~la-a~-W~Ly~Aq~~L~~va~~~gV~l~~ 631 (965)
.+.=-||+|-+|=+.+-|... .. -.+..|-.++.+.|.++|+..-+
T Consensus 162 -------~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi 209 (249)
T TIGR02311 162 -------EGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGI 209 (249)
T ss_pred -------CCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceee
Confidence 245679999999888888633 23 35777888899999999997743
No 20
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=86.68 E-value=2.1 Score=51.34 Aligned_cols=89 Identities=15% Similarity=0.223 Sum_probs=76.0
Q ss_pred hhHHhccCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCcchh
Q 002112 524 GAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAG 603 (965)
Q Consensus 524 ~~yIISmt~sasDvL~vl~L~ke~Gl~~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG 603 (965)
--+-+|..++++||-++--+.+..| ..+.|++-.||.+.++|.++|++. .=.||+|-.|=+-.-|
T Consensus 189 D~ia~SFV~~~~di~~~r~~l~~~~--~~~~iiakIEt~~av~nldeI~~~-------------~DgImIargDLg~e~g 253 (480)
T cd00288 189 DMIFASFVRKASDVLEIREVLGEKG--KDIKIIAKIENQEGVNNFDEILEA-------------SDGIMVARGDLGVEIP 253 (480)
T ss_pred CEEEECCCCCHHHHHHHHHHHHhcC--CCceEEEEECCHHHHHhHHHHHHh-------------cCEEEECcchhhhhcC
Confidence 3356799999999999988877765 367799999999999999999998 1369999999988888
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002112 604 RLSAAWQLYKTQEELVKVAKQYGVKLTM 631 (965)
Q Consensus 604 ~laa~W~Ly~Aq~~L~~va~~~gV~l~~ 631 (965)
. =.+-.+|+++.+.|+++|+.+..
T Consensus 254 ~----~~v~~~qk~ii~~~~~~gkpvi~ 277 (480)
T cd00288 254 A----EEVFLAQKMLIAKCNLAGKPVIT 277 (480)
T ss_pred h----HHHHHHHHHHHHHHHHcCCCEEE
Confidence 3 67788999999999999997764
No 21
>PRK06247 pyruvate kinase; Provisional
Probab=86.22 E-value=2.2 Score=51.01 Aligned_cols=85 Identities=20% Similarity=0.260 Sum_probs=74.2
Q ss_pred hHHhccCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCcchhh
Q 002112 525 AYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGR 604 (965)
Q Consensus 525 ~yIISmt~sasDvL~vl~L~ke~Gl~~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~ 604 (965)
-+-+|..++++||.++--+... .+.|++-.||.+.++|.++|++. .=.||+|-.|=+-.-|+
T Consensus 189 ~ia~SFVr~a~Di~~~r~~l~~-----~~~iiaKIEt~eav~nldeI~~~-------------~DgImVaRGDLgve~g~ 250 (476)
T PRK06247 189 WVALSFVQRPEDVEEVRKIIGG-----RVPVMAKIEKPQAIDRLEAIVEA-------------SDAIMVARGDLGVEVPL 250 (476)
T ss_pred EEEECCCCCHHHHHHHHHHhhh-----cCeEEEEECCHHHHHhHHHHHHH-------------cCEEEEccchhccccCH
Confidence 3457999999999999766532 57799999999999999999998 23699999999999997
Q ss_pred HhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002112 605 LSAAWQLYKTQEELVKVAKQYGVKLTM 631 (965)
Q Consensus 605 laa~W~Ly~Aq~~L~~va~~~gV~l~~ 631 (965)
..+..+|+++.+.|+++|..+..
T Consensus 251 ----~~v~~~qk~ii~~~~~~gkpvI~ 273 (476)
T PRK06247 251 ----EQVPLIQKRIIRAARRAGKPVVV 273 (476)
T ss_pred ----HHHHHHHHHHHHHHHHhCCCEEE
Confidence 88999999999999999998876
No 22
>PRK06354 pyruvate kinase; Provisional
Probab=85.71 E-value=2.4 Score=52.14 Aligned_cols=87 Identities=23% Similarity=0.301 Sum_probs=74.8
Q ss_pred HHhccCCChhhHHHHHHHHHH-cCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCcchhh
Q 002112 526 YIISMATAPSDVLAVELLQRE-CRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGR 604 (965)
Q Consensus 526 yIISmt~sasDvL~vl~L~ke-~Gl~~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~ 604 (965)
+-+|+.++++||.++--+..+ .| ..+.|+.-.||.+.|+|.++|++. .=-||+|-.|=+-.-|
T Consensus 195 ia~SFVr~~~dv~~~r~~l~~~~~--~~~~iiaKIEt~eav~nldeI~~~-------------~DgImVaRGDLgve~g- 258 (590)
T PRK06354 195 IALSFVRNPSDVLEIRELIEEHNG--KHIPIIAKIEKQEAIDNIDAILEL-------------CDGLMVARGDLGVEIP- 258 (590)
T ss_pred EEEcCCCCHHHHHHHHHHHHHhcC--CCceEEEEECCHHHHHhHHHHHHh-------------cCEEEEccchhhcccC-
Confidence 457999999999999777644 34 367899999999999999999988 2359999999999988
Q ss_pred HhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002112 605 LSAAWQLYKTQEELVKVAKQYGVKLTM 631 (965)
Q Consensus 605 laa~W~Ly~Aq~~L~~va~~~gV~l~~ 631 (965)
...+..+|+++.+.|+++|..+..
T Consensus 259 ---~e~v~~~qk~ii~~~~~~gkpvI~ 282 (590)
T PRK06354 259 ---AEEVPLLQKRLIKKANRLGKPVIT 282 (590)
T ss_pred ---cHHHHHHHHHHHHHHHHcCCCEEE
Confidence 778888999999999999998875
No 23
>PRK06739 pyruvate kinase; Validated
Probab=73.13 E-value=16 Score=42.27 Aligned_cols=100 Identities=12% Similarity=0.128 Sum_probs=79.6
Q ss_pred HHHHHhCCCcchhhHHhccCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEE
Q 002112 512 FHVISELPADSFGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEV 591 (965)
Q Consensus 512 f~~i~~~~~~~~~~yIISmt~sasDvL~vl~L~ke~Gl~~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeV 591 (965)
++.....+-+.+ -+|..++++||.++--+.++.|. ..+.|+.=.||.+.++|-++|++.- --|
T Consensus 171 i~f~~~~~vD~i---a~SFVr~~~Dv~~~r~~l~~~g~-~~~~IiaKIE~~~av~nl~eI~~~s-------------Dgi 233 (352)
T PRK06739 171 IQFLLEEDVDFI---ACSFVRKPSHIKEIRDFIQQYKE-TSPNLIAKIETMEAIENFQDICKEA-------------DGI 233 (352)
T ss_pred HHHHHHcCCCEE---EECCCCCHHHHHHHHHHHHHcCC-CCCcEEEEECCHHHHHHHHHHHHhc-------------CEE
Confidence 333444444433 35999999999999888888775 4678999999999999999999983 468
Q ss_pred EEeeccCCcchhhHhHHHHHHHHHHHHHHHHHHhCCeEEEe
Q 002112 592 MIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMF 632 (965)
Q Consensus 592 MlGYSDS~KDgG~laa~W~Ly~Aq~~L~~va~~~gV~l~~F 632 (965)
|+.--|=+ .=..-+.+-..|+++...|+++|..+..=
T Consensus 234 mVARGDLg----ve~~~e~vp~~Qk~Ii~~c~~~gkPvIvA 270 (352)
T PRK06739 234 MIARGDLG----VELPYQFIPLLQKMMIQECNRTNTYVITA 270 (352)
T ss_pred EEECcccc----cccCHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99876654 44556899999999999999999988753
No 24
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=72.17 E-value=6.5 Score=45.38 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=73.6
Q ss_pred hhhHHhccCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCcch
Q 002112 523 FGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDA 602 (965)
Q Consensus 523 ~~~yIISmt~sasDvL~vl~L~ke~Gl~~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDg 602 (965)
+--+-+|..++++||.++--+.++.| ..+.|+.=.||.+.++|-++|++.- =-||+.--| -
T Consensus 190 vD~IalSFVrsa~dV~~lr~~l~~~~--~~~~iiaKIE~~~~v~nl~eI~~~s-------------DgimiaRGD----L 250 (348)
T PF00224_consen 190 VDFIALSFVRSAEDVKELRKILGEKG--KDIKIIAKIETKEAVENLDEILEAS-------------DGIMIARGD----L 250 (348)
T ss_dssp -SEEEETTE-SHHHHHHHHHHHTCTT--TTSEEEEEE-SHHHHHTHHHHHHHS-------------SEEEEEHHH----H
T ss_pred CCEEEecCCCchHHHHHHHHHhhhcC--cccceeeccccHHHHhhHHHHhhhc-------------CeEEEecCC----c
Confidence 33456799999999999999988888 5788999999999999999999872 368987665 5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhCCeEEEe
Q 002112 603 GRLSAAWQLYKTQEELVKVAKQYGVKLTMF 632 (965)
Q Consensus 603 G~laa~W~Ly~Aq~~L~~va~~~gV~l~~F 632 (965)
|.=..-..+..+|+.+...|+++|..+.+=
T Consensus 251 g~e~~~e~v~~~Qk~ii~~~~~~~kpvi~A 280 (348)
T PF00224_consen 251 GVEIPFEKVPIIQKRIIKKCNAAGKPVIVA 280 (348)
T ss_dssp HHHSTGGGHHHHHHHHHHHHHHHT-EEEEE
T ss_pred ceeeeHHHHHHHHHHHHHHHHHhCCCeeeh
Confidence 555666789999999999999999988763
No 25
>PRK14725 pyruvate kinase; Provisional
Probab=68.69 E-value=14 Score=45.38 Aligned_cols=108 Identities=20% Similarity=0.196 Sum_probs=83.9
Q ss_pred HHhccCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCcchhhH
Q 002112 526 YIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRL 605 (965)
Q Consensus 526 yIISmt~sasDvL~vl~L~ke~Gl~~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~l 605 (965)
+-+|..++++||..+.-+.++.|. ..+.|+.=.||.+.++|-++|+..-..++ .--|||.-=|=+=..|
T Consensus 448 ValSFVrs~~DV~~lr~~L~~~g~-~~~~IiaKIEt~~av~nL~eIl~~am~~~--------~DGIMIARGDLgvEi~-- 516 (608)
T PRK14725 448 VALSFVRSPEDVRLLLDALEKLGA-DDLGVVLKIETRRAFENLPRILLEAMRHP--------RFGVMIARGDLAVEVG-- 516 (608)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCC-CCCcEEEEECCHHHHHHHHHHHHhhccCC--------CcEEEEECCccccccC--
Confidence 346999999999999888887775 35789999999999999999998754332 2458888766555554
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCch
Q 002112 606 SAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPT 646 (965)
Q Consensus 606 aa~W~Ly~Aq~~L~~va~~~gV~l~~FHGRGGsvgRGGGPt 646 (965)
-..+...|++|...|+.+|+.++.===-=.|+-..+=||
T Consensus 517 --~e~lp~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~p~PT 555 (608)
T PRK14725 517 --FERLAEVQEEILWLCEAAHVPVIWATQVLESLAKKGLPS 555 (608)
T ss_pred --HHHHHHHHHHHHHHHHHcCCCEEEEcchHhhhccCCCCC
Confidence 478999999999999999999887443444555555566
No 26
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=66.85 E-value=2.9 Score=46.48 Aligned_cols=29 Identities=28% Similarity=0.574 Sum_probs=18.3
Q ss_pred cCCchHHHHHhhC----chh-------------HhhhCCCCCCCCc
Q 002112 728 QEPRFVEYFRLAT----PEM-------------EYGRMNIGSRPSK 756 (965)
Q Consensus 728 ~~p~F~~yF~~aT----Pi~-------------ei~~lnIGSRPak 756 (965)
....|+.||...| |++ .+-.|+||.||-=
T Consensus 81 ~~~kyiaYFQ~~TNTyApvevLre~ye~aL~~~~VVGLsIgTRPDC 126 (312)
T COG1242 81 KRGKYIAYFQAYTNTYAPVEVLREMYEQALSEAGVVGLSIGTRPDC 126 (312)
T ss_pred cCCcEEEEEeccccccCcHHHHHHHHHHHhCcCCeeEEeecCCCCC
Confidence 3444777776665 444 3334999999953
No 27
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=65.86 E-value=22 Score=39.63 Aligned_cols=71 Identities=15% Similarity=0.180 Sum_probs=56.3
Q ss_pred CCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCcchhhHh--HHHHHHHHHHHHHHHHHHhCCe
Q 002112 551 QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLS--AAWQLYKTQEELVKVAKQYGVK 628 (965)
Q Consensus 551 ~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~la--a~W~Ly~Aq~~L~~va~~~gV~ 628 (965)
..+-|++..||.+.++|+.+|+.. .+.--|++|=.|=+.+-|+.. -.=.+..|-+++.+.|++||+.
T Consensus 144 ~~~~vi~qiEt~~a~~n~~~I~~~-----------~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~ 212 (267)
T PRK10128 144 DSLCLLVQVESKTALDNLDEILDV-----------EGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKA 212 (267)
T ss_pred cccEEEEEECCHHHHHhHHHHhCC-----------CCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCe
Confidence 467789999999999999999853 467789999998887777532 1235667899999999999998
Q ss_pred EEEe
Q 002112 629 LTMF 632 (965)
Q Consensus 629 l~~F 632 (965)
+-+|
T Consensus 213 ~G~~ 216 (267)
T PRK10128 213 AGFL 216 (267)
T ss_pred EEEc
Confidence 7543
No 28
>PLN02765 pyruvate kinase
Probab=60.13 E-value=35 Score=41.60 Aligned_cols=87 Identities=9% Similarity=0.088 Sum_probs=73.3
Q ss_pred HHhccCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCcchhhH
Q 002112 526 YIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRL 605 (965)
Q Consensus 526 yIISmt~sasDvL~vl~L~ke~Gl~~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~l 605 (965)
.-+|..++++||.++--+.++.|. ..+.|+.=.||.+.++|-++|++.- =-||+.--|= |.=
T Consensus 224 ia~SFVr~a~DI~~~r~~l~~~g~-~~~~IiaKIE~~~av~nl~eIi~~s-------------DgIMVARGDL----GvE 285 (526)
T PLN02765 224 LSLSYTRHAEDVREAREFLSSLGL-SQTQIFAKIENVEGLTHFDEILQEA-------------DGIILSRGNL----GID 285 (526)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCC-CCCcEEEEECCHHHHHHHHHHHHhc-------------CEEEEecCcc----ccc
Confidence 346999999999999888888775 3678999999999999999999973 4689987664 444
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCeEE
Q 002112 606 SAAWQLYKTQEELVKVAKQYGVKLT 630 (965)
Q Consensus 606 aa~W~Ly~Aq~~L~~va~~~gV~l~ 630 (965)
..-..+..+|+++...|+++|..+.
T Consensus 286 ip~e~vp~~QK~iI~~c~~~gKPVI 310 (526)
T PLN02765 286 LPPEKVFLFQKAALYKCNMAGKPAV 310 (526)
T ss_pred cCHHHhHHHHHHHHHHHHHhCCCeE
Confidence 5668899999999999999998765
No 29
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=58.93 E-value=8.2 Score=43.30 Aligned_cols=100 Identities=20% Similarity=0.272 Sum_probs=76.5
Q ss_pred chhhHHhccCCChhhHHHHHHHHHHcCCCCCCc-cccccCChHHHhchHHHHHHHhccHHHHhhcCCe-eEEEEeeccCC
Q 002112 522 SFGAYIISMATAPSDVLAVELLQRECRVKQPLR-VVPLFEKLADLEAAPASVARLFSIDWYRNRISGK-QEVMIGYSDSG 599 (965)
Q Consensus 522 ~~~~yIISmt~sasDvL~vl~L~ke~Gl~~~l~-VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~-QeVMlGYSDS~ 599 (965)
++..+++..+++++|+..+-.+.....-.+++. +..++||..-+.|+..|... .++ ..+++|=.|=.
T Consensus 80 ~~d~v~LPK~e~~~~v~~~~~~l~~~~~~~~~~~l~a~iETa~gv~~~~eIA~a-----------~~~l~~l~~Ga~Dl~ 148 (283)
T COG2301 80 AVDGVVLPKVESAADVEELDQLLREAEAAAGREILIALIETARGVLNAEEIAAA-----------SGRLVGLAFGANDLA 148 (283)
T ss_pred CCCEEEccCcCchHHHHHHHHHhhhhhccccchhhHHhhhcHHHHhCHHHHhcC-----------ccceeeeEecHHHHH
Confidence 377789999999999999977766443333444 89999999999999999876 234 67788887766
Q ss_pred cchhhHhHH---HHHHHHHHHHHHHHHHhCCeEEEecC
Q 002112 600 KDAGRLSAA---WQLYKTQEELVKVAKQYGVKLTMFHG 634 (965)
Q Consensus 600 KDgG~laa~---W~Ly~Aq~~L~~va~~~gV~l~~FHG 634 (965)
+|-|--.+. =.++-+...++..|+-+|+.. |+|
T Consensus 149 ~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a--~D~ 184 (283)
T COG2301 149 ADLGARRSPDGTDPLRYARAMIVLAARAAGLAA--IDG 184 (283)
T ss_pred HHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCc--ccc
Confidence 666654433 277888899999999999987 554
No 30
>PLN02461 Probable pyruvate kinase
Probab=57.66 E-value=41 Score=40.95 Aligned_cols=88 Identities=15% Similarity=0.194 Sum_probs=73.9
Q ss_pred hHHhccCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCcchhh
Q 002112 525 AYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGR 604 (965)
Q Consensus 525 ~yIISmt~sasDvL~vl~L~ke~Gl~~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~ 604 (965)
-+-+|..++++||.++--+....|- .+.|+.=.||.+.++|-++|++. -=-||+..-|=+-.-|
T Consensus 210 ~ia~SFVr~a~DV~~~r~~l~~~~~--~~~IiAKIE~~~av~nl~eIi~~-------------sDgIMVARGDLGvEip- 273 (511)
T PLN02461 210 FIALSFVRKGSDLVEVRKVLGEHAK--SILLISKVENQEGLDNFDDILAE-------------SDAFMVARGDLGMEIP- 273 (511)
T ss_pred EEEECCCCCHHHHHHHHHHHHhCCC--CCCEEEEECCHHHHHHHHHHHHh-------------cCEEEEeccccccccC-
Confidence 3457999999999999888876654 67889999999999999999998 3469998877655544
Q ss_pred HhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002112 605 LSAAWQLYKTQEELVKVAKQYGVKLTM 631 (965)
Q Consensus 605 laa~W~Ly~Aq~~L~~va~~~gV~l~~ 631 (965)
-..+..+|+++.+.|+++|..+..
T Consensus 274 ---~e~vp~~Qk~II~~c~~~gkPVIv 297 (511)
T PLN02461 274 ---IEKIFLAQKMMIYKCNLAGKPVVT 297 (511)
T ss_pred ---HHHhHHHHHHHHHHHHHcCCCeEE
Confidence 567899999999999999998775
No 31
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=56.45 E-value=32 Score=33.17 Aligned_cols=56 Identities=13% Similarity=0.350 Sum_probs=44.6
Q ss_pred cCCeeEEEEeeccCCcchhhHhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCchhhhh
Q 002112 585 ISGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTMFHGRGGTVGRGGGPTHLAI 650 (965)
Q Consensus 585 l~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~va~~~gV~l~~FHGRGGsvgRGGGPt~~ai 650 (965)
+|-.+-+.+||.|+.-.. |......+.|.++.+++.-.++|-|-..|. |+|-|.++
T Consensus 65 lGv~~~~~l~~~D~~~~~------~~~~~~~~~l~~~i~~~~p~~V~t~~~~~~----gH~DH~~~ 120 (128)
T PF02585_consen 65 LGVENVIFLDFPDGQLPG------WSWEELVRDLEDLIREFRPDVVFTPDPDDG----GHPDHRAV 120 (128)
T ss_dssp CT-EEEEEEEECTTSCTC------HHHHHHHHHHHHHHHHH-ESEEEEE-STTS-----SHHHHHH
T ss_pred cCCceEEEeecCCCCccc------ccHHHHHHHHHHHHHHcCCCEEEECCCCCC----CcHHHHHH
Confidence 344588999999999877 999999999999999998888888876666 89988854
No 32
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=54.07 E-value=13 Score=43.61 Aligned_cols=73 Identities=30% Similarity=0.505 Sum_probs=40.9
Q ss_pred CCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEe----eccCCcchhhHhHHHHHHHHHHHHHHHHHHhCC
Q 002112 552 PLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIG----YSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGV 627 (965)
Q Consensus 552 ~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlG----YSDS~KDgG~laa~W~Ly~Aq~~L~~va~~~gV 627 (965)
||++|.--.+...|++.=+.|.. .++--||+= -=.+..+ --=+|+-|+ +|.++++++|.
T Consensus 5 PLd~v~~~~~~~~~~~~L~~LK~-----------~GV~GVmvdvWWGiVE~~~p---~~ydWs~Y~---~l~~~vr~~GL 67 (402)
T PF01373_consen 5 PLDTVTDDNDWNALEAQLRALKS-----------AGVDGVMVDVWWGIVEGEGP---QQYDWSGYR---ELFEMVRDAGL 67 (402)
T ss_dssp -TTSSCTTSECHHHHHHHHHHHH-----------TTEEEEEEEEEHHHHTGSST---TB---HHHH---HHHHHHHHTT-
T ss_pred eeeeecCCCcHHHHHHHHHHHHH-----------cCCcEEEEEeEeeeeccCCC---CccCcHHHH---HHHHHHHHcCC
Confidence 56666655554433333333322 367777772 2222212 234788886 68889999999
Q ss_pred eEEE---ecCCCCCCCC
Q 002112 628 KLTM---FHGRGGTVGR 641 (965)
Q Consensus 628 ~l~~---FHGRGGsvgR 641 (965)
|++. ||+.||.||-
T Consensus 68 k~~~vmsfH~cGgNvgD 84 (402)
T PF01373_consen 68 KLQVVMSFHQCGGNVGD 84 (402)
T ss_dssp EEEEEEE-S-BSSSTTS
T ss_pred eEEEEEeeecCCCCCCC
Confidence 9877 9999999985
No 33
>PTZ00066 pyruvate kinase; Provisional
Probab=53.52 E-value=45 Score=40.61 Aligned_cols=87 Identities=16% Similarity=0.232 Sum_probs=73.9
Q ss_pred HHhccCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCcchhhH
Q 002112 526 YIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRL 605 (965)
Q Consensus 526 yIISmt~sasDvL~vl~L~ke~Gl~~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~l 605 (965)
+-+|..++++||.++--+.++.|- .+.|+.=.||.+.++|-++|++. -=-||+..-|=+ .=
T Consensus 227 IalSFVr~a~DI~~~r~~l~~~g~--~~~IiAKIE~~~av~NldeIl~~-------------sDGIMVARGDLG----vE 287 (513)
T PTZ00066 227 IALSFVQSADDVRLCRQLLGERGR--HIKIIPKIENIEGLINFDEILAE-------------SDGIMVARGDLG----ME 287 (513)
T ss_pred EEECCCCCHHHHHHHHHHHHhCCC--CceEEEEECCHHHHHHHHHHHHh-------------cCEEEEEccccc----cc
Confidence 457999999999999888888775 57889999999999999999997 356999877654 44
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002112 606 SAAWQLYKTQEELVKVAKQYGVKLTM 631 (965)
Q Consensus 606 aa~W~Ly~Aq~~L~~va~~~gV~l~~ 631 (965)
..-..+..+|+++.+.|+++|..+..
T Consensus 288 ip~e~vp~~QK~II~~c~~~gkPVIv 313 (513)
T PTZ00066 288 IPPEKVFLAQKMMISKCNVAGKPVIT 313 (513)
T ss_pred cChHHcchHHHHHHHHHHHhCCCEEE
Confidence 55678999999999999999988765
No 34
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=53.04 E-value=29 Score=42.09 Aligned_cols=97 Identities=11% Similarity=0.038 Sum_probs=69.2
Q ss_pred chhhHHhccCCChhhHHHHHHHH----HHcCCC-CCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeec
Q 002112 522 SFGAYIISMATAPSDVLAVELLQ----RECRVK-QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYS 596 (965)
Q Consensus 522 ~~~~yIISmt~sasDvL~vl~L~----ke~Gl~-~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYS 596 (965)
++ -++|..++++.|+-.+--+. +..|+. .++.+.+|.||+..+-|+.+|+.++ |.|+ .-++.|.-
T Consensus 185 gp-yi~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~al------r~Rl---~gLn~G~~ 254 (511)
T cd00727 185 GP-YFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIKATVLIETLPAAFEMDEILYEL------RDHS---AGLNCGRW 254 (511)
T ss_pred Cc-EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCHHHHHHHHHHHHhc------cCce---EEEEcChH
Confidence 45 78899999999998774333 356775 6899999999999999999999775 2333 44677776
Q ss_pred cCCcchhhHh---------------HHHHHHHH-HHHHHHHHHHhCCe
Q 002112 597 DSGKDAGRLS---------------AAWQLYKT-QEELVKVAKQYGVK 628 (965)
Q Consensus 597 DS~KDgG~la---------------a~W~Ly~A-q~~L~~va~~~gV~ 628 (965)
|=.+|-|.-. -+=.+..| +..++..|+++|+.
T Consensus 255 Dy~~sli~~~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~~ 302 (511)
T cd00727 255 DYIFSFIKKFRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGAH 302 (511)
T ss_pred HHHHHHHHhhccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCCC
Confidence 6555443221 11145566 66699999999974
No 35
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=51.56 E-value=25 Score=42.82 Aligned_cols=95 Identities=12% Similarity=0.093 Sum_probs=68.2
Q ss_pred hHHhccCCChhhHHHHHHH----HHHcCCC-CCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCC
Q 002112 525 AYIISMATAPSDVLAVELL----QRECRVK-QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSG 599 (965)
Q Consensus 525 ~yIISmt~sasDvL~vl~L----~ke~Gl~-~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYSDS~ 599 (965)
-++|..++|+.|+..+--+ .+..|+. .++.++||.||+..+.|..+|+..+= .++ --+..|.-|=.
T Consensus 187 yi~LPKves~~Ev~~~~~~~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr------~rv---~gLn~G~~Dy~ 257 (511)
T cd00480 187 YFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELR------DHS---AGLNCGRWDYI 257 (511)
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhcc------Ccc---eeeecChHHHH
Confidence 4578999999999888433 3456775 57999999999999999999997642 222 34666666655
Q ss_pred cchhhH-----------------hHHHHHHHHHHHHHHHHHHhCCeE
Q 002112 600 KDAGRL-----------------SAAWQLYKTQEELVKVAKQYGVKL 629 (965)
Q Consensus 600 KDgG~l-----------------aa~W~Ly~Aq~~L~~va~~~gV~l 629 (965)
.|-|.. ++-| ++-.+..++..|+++|+..
T Consensus 258 ~sli~~~~~~~~~~~pd~~~~~m~~~~-l~ay~~~lv~aa~a~G~~A 303 (511)
T cd00480 258 FSEIKTFRNHPDFVLPDRAKVTMTSPF-MRAYEKLLVKTCHRRGAHA 303 (511)
T ss_pred HHhccccccCccccCCcccccccccHH-HHHHHHHHHHHHHHcCCCc
Confidence 555332 2233 4556778999999999975
No 36
>PRK09255 malate synthase; Validated
Probab=48.70 E-value=40 Score=41.12 Aligned_cols=97 Identities=11% Similarity=0.057 Sum_probs=68.4
Q ss_pred chhhHHhccCCChhhHHHHHHHH----HHcCCC-CCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeec
Q 002112 522 SFGAYIISMATAPSDVLAVELLQ----RECRVK-QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYS 596 (965)
Q Consensus 522 ~~~~yIISmt~sasDvL~vl~L~----ke~Gl~-~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYS 596 (965)
.+ .++|..++++.|+-.+--+. +..|+. .++.+.+|.||+..+-|+.+|+.++ |.|+ .-++.|.-
T Consensus 206 gp-~i~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~a~------r~Rl---~gLn~G~~ 275 (531)
T PRK09255 206 GP-YFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIKATVLIETLPAAFEMDEILYEL------REHI---AGLNCGRW 275 (531)
T ss_pred Cc-EEeccCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHHHHHHHHHHhc------cCce---EEEEcChH
Confidence 35 88899999999998774433 356775 6899999999999999999999775 2333 44677776
Q ss_pred cCCcchh--------hH-------hHHHHHHHH-HHHHHHHHHHhCCe
Q 002112 597 DSGKDAG--------RL-------SAAWQLYKT-QEELVKVAKQYGVK 628 (965)
Q Consensus 597 DS~KDgG--------~l-------aa~W~Ly~A-q~~L~~va~~~gV~ 628 (965)
|=..+-+ ++ +-+=.+..| +..++..|+++|+.
T Consensus 276 Dy~~S~ik~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~~ 323 (531)
T PRK09255 276 DYIFSYIKTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGAH 323 (531)
T ss_pred HhhhhHHHHhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCCC
Confidence 6654322 11 111145556 66777999999963
No 37
>PLN02762 pyruvate kinase complex alpha subunit
Probab=48.64 E-value=78 Score=38.60 Aligned_cols=89 Identities=15% Similarity=0.201 Sum_probs=74.3
Q ss_pred HHhccCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCcchhhH
Q 002112 526 YIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRL 605 (965)
Q Consensus 526 yIISmt~sasDvL~vl~L~ke~Gl~~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~l 605 (965)
.-+|..++++||..+--+.++.|....+.|+.=.||.+.++|-++|++. -=-||+.--|=+-.
T Consensus 220 ia~SFVr~a~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av~nl~eIi~~-------------sDgiMVARGDLGvE---- 282 (509)
T PLN02762 220 IAVSFVKSAEVIKHLKSYIAARSRDSDIGVIAKIESLDSLKNLEEIIRA-------------SDGAMVARGDLGAQ---- 282 (509)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCCCCceEEEEeCCHHHHHHHHHHHHh-------------cCEEEEecCccccc----
Confidence 4579999999999998888887764467889999999999999999987 23689987765544
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002112 606 SAAWQLYKTQEELVKVAKQYGVKLTM 631 (965)
Q Consensus 606 aa~W~Ly~Aq~~L~~va~~~gV~l~~ 631 (965)
..-..+..+|+++...|+++|..+..
T Consensus 283 ip~e~vp~~QK~II~~c~~~gKPVIv 308 (509)
T PLN02762 283 IPLEQVPSVQEKIVRLCRQLNKPVIV 308 (509)
T ss_pred cCHHHhHHHHHHHHHHHHHhCCCEEE
Confidence 45578999999999999999988765
No 38
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=46.28 E-value=41 Score=41.52 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=74.7
Q ss_pred chhhHHhccCCChhhHHHHHHHHHHcC-------C--CCCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEE
Q 002112 522 SFGAYIISMATAPSDVLAVELLQRECR-------V--KQPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVM 592 (965)
Q Consensus 522 ~~~~yIISmt~sasDvL~vl~L~ke~G-------l--~~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVM 592 (965)
.--..++-|.++++++.++.-++++++ . ...+.|.+..||+..+.+++.|++. .--|+
T Consensus 383 G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~-------------vDf~s 449 (565)
T TIGR01417 383 GKLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKE-------------VDFFS 449 (565)
T ss_pred CCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHhh-------------CCEEE
Confidence 345678999999999999988888643 2 2468899999999999999998872 34455
Q ss_pred EeeccCCc-----c-----hhh--HhHHHHHHHHHHHHHHHHHHhCCeEEEecCCC
Q 002112 593 IGYSDSGK-----D-----AGR--LSAAWQLYKTQEELVKVAKQYGVKLTMFHGRG 636 (965)
Q Consensus 593 lGYSDS~K-----D-----gG~--laa~W~Ly~Aq~~L~~va~~~gV~l~~FHGRG 636 (965)
||.-|=+- | -|+ =.-.=++.++-.++++.|+++|+.+.+.+.-+
T Consensus 450 IGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a 505 (565)
T TIGR01417 450 IGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMA 505 (565)
T ss_pred EChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcC
Confidence 66555433 1 221 12234788899999999999999987655444
No 39
>PF02526 GBP_repeat: Glycophorin-binding protein; InterPro: IPR003681 The glycophorin-binding protein contains a tandem repeat. The repeated sequence determines the binding domain for an erythrocyte receptor binding protein of Plasmodium falciparum, the malarial parasite []. Erythrocyte invasion by the malarial merozoite is a receptor-mediated process, an obligatory step in the development of the parasite. The P. falciparum protein binds to the erythrocyte receptor glycophorin.
Probab=44.55 E-value=17 Score=27.78 Aligned_cols=18 Identities=11% Similarity=0.088 Sum_probs=16.4
Q ss_pred HHHHHHHhccHHHHhhcC
Q 002112 569 PASVARLFSIDWYRNRIS 586 (965)
Q Consensus 569 ~~Im~~ll~~p~yr~~l~ 586 (965)
.+||..+-.+|.||.||+
T Consensus 7 gqimk~yaadpeyrkh~~ 24 (38)
T PF02526_consen 7 GQIMKAYAADPEYRKHLN 24 (38)
T ss_pred hHHHHHHhcCHHHHHHHH
Confidence 589999999999999983
No 40
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=44.42 E-value=28 Score=42.20 Aligned_cols=95 Identities=11% Similarity=0.049 Sum_probs=67.9
Q ss_pred hHHhccCCChhhHHHHHHHH----HHcCCC-CCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCC
Q 002112 525 AYIISMATAPSDVLAVELLQ----RECRVK-QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSG 599 (965)
Q Consensus 525 ~yIISmt~sasDvL~vl~L~----ke~Gl~-~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYSDS~ 599 (965)
.++|...+++.|+-.+--+. +..|+. .++.+.+|.||+-.+-|.++|+.++ |.|+ .-+..|.-|=.
T Consensus 188 ~i~LPKves~~Ev~~~~~vf~~aE~~lglp~gtIk~~vlIET~~A~~nm~EIa~al------r~Rl---~gLn~G~~Dy~ 258 (511)
T TIGR01344 188 YFYLPKLESHQEARLWNDVFHFAQDFLGLPRGTIKATVLIETLPAAFEMDEILYEL------REHI---SGLNCGRWDYI 258 (511)
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCHHHHHhHHHHHHhc------cCce---eEEEcChHHhh
Confidence 77899999999998764333 355775 6799999999999999999999876 3333 44778888877
Q ss_pred cchh----h----HhHH-H------HHHHH-HHHHHHHHHHhCCe
Q 002112 600 KDAG----R----LSAA-W------QLYKT-QEELVKVAKQYGVK 628 (965)
Q Consensus 600 KDgG----~----laa~-W------~Ly~A-q~~L~~va~~~gV~ 628 (965)
++-+ . .... . ....| +..++..|+++|+.
T Consensus 259 ~S~ik~~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~~ 303 (511)
T TIGR01344 259 FSFIKTLRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGAH 303 (511)
T ss_pred hhHHHHHhhCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCCC
Confidence 3322 1 2111 1 45566 66677999999973
No 41
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=43.95 E-value=16 Score=42.65 Aligned_cols=63 Identities=24% Similarity=0.334 Sum_probs=45.2
Q ss_pred hhhHHhccCCChhhHHHHHHHHHHcCCC----------------CCCccccccCChHHHhchHHHHHHHhccHHHHhhc
Q 002112 523 FGAYIISMATAPSDVLAVELLQRECRVK----------------QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRI 585 (965)
Q Consensus 523 ~~~yIISmt~sasDvL~vl~L~ke~Gl~----------------~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l 585 (965)
-|.|.||...-.-.--.|.-|||++|+. ..|+|.|=|-++++|+.|-+++-.....-.....+
T Consensus 344 ~GGYFIsld~~~G~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~la~~ekll 422 (425)
T PF12897_consen 344 KGGYFISLDVLDGTAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVKLAAVEKLL 422 (425)
T ss_dssp SBSS-EEEEESTT-HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEecCCChHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678898776666666788899999982 47999999999999999999987776655555444
No 42
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=41.17 E-value=25 Score=45.10 Aligned_cols=93 Identities=19% Similarity=0.120 Sum_probs=70.8
Q ss_pred HHhccCCChhhHHHHHHHHHHcCCC---CCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccC----
Q 002112 526 YIISMATAPSDVLAVELLQRECRVK---QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDS---- 598 (965)
Q Consensus 526 yIISmt~sasDvL~vl~L~ke~Gl~---~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYSDS---- 598 (965)
.++-|-++++++.++.-.+|..|+. ..+.|.+..||.+.+.++++|+.. ..-|+||-.|=
T Consensus 640 ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~-------------vDfi~IGtnDLtq~~ 706 (795)
T PRK06464 640 VMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEY-------------FDGFSIGSNDLTQLT 706 (795)
T ss_pred EEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHh-------------CCEEEECchHHHHHH
Confidence 7899999999999999999888874 368899999999999999999976 12344444332
Q ss_pred ------CcchhhHh--HHHHHHHHHHHHHHHHHHhCCeEEE
Q 002112 599 ------GKDAGRLS--AAWQLYKTQEELVKVAKQYGVKLTM 631 (965)
Q Consensus 599 ------~KDgG~la--a~W~Ly~Aq~~L~~va~~~gV~l~~ 631 (965)
|...|.+- -+=++.++-+++.+.|+++|+.+-+
T Consensus 707 lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgi 747 (795)
T PRK06464 707 LGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGI 747 (795)
T ss_pred hCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 22222221 1237889999999999999998875
No 43
>PLN00197 beta-amylase; Provisional
Probab=40.21 E-value=25 Score=42.66 Aligned_cols=32 Identities=44% Similarity=0.838 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCCC
Q 002112 608 AWQLYKTQEELVKVAKQYGVKLTM---FHGRGGTVGRG 642 (965)
Q Consensus 608 ~W~Ly~Aq~~L~~va~~~gV~l~~---FHGRGGsvgRG 642 (965)
+|+=|+ +|.++++++|.|+.. ||..||.||-.
T Consensus 162 dWsgY~---~L~~mvr~~GLKlq~VmSFHqCGGNVGD~ 196 (573)
T PLN00197 162 NWGGYN---ELLEMAKRHGLKVQAVMSFHQCGGNVGDS 196 (573)
T ss_pred CcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCc
Confidence 788886 789999999999875 99999999874
No 44
>PLN02803 beta-amylase
Probab=39.84 E-value=26 Score=42.39 Aligned_cols=34 Identities=41% Similarity=0.786 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCCCC
Q 002112 607 AAWQLYKTQEELVKVAKQYGVKLTM---FHGRGGTVGRGG 643 (965)
Q Consensus 607 a~W~Ly~Aq~~L~~va~~~gV~l~~---FHGRGGsvgRGG 643 (965)
=+|+=|+ +|.++++++|.|+.. ||..||.||-.-
T Consensus 141 YdWsgY~---~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~ 177 (548)
T PLN02803 141 YNWEGYA---ELVQMVQKHGLKLQVVMSFHQCGGNVGDSC 177 (548)
T ss_pred CCcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 3788886 789999999999875 999999998754
No 45
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=39.53 E-value=56 Score=41.95 Aligned_cols=93 Identities=18% Similarity=0.145 Sum_probs=71.3
Q ss_pred HHhccCCChhhHHHHHHHHHHcCCC---CCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCc--
Q 002112 526 YIISMATAPSDVLAVELLQRECRVK---QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGK-- 600 (965)
Q Consensus 526 yIISmt~sasDvL~vl~L~ke~Gl~---~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYSDS~K-- 600 (965)
.++-|.+++.++.++.-.++..|+. ..+.|....||++.+.++++|++. ..-|+||-.|=+-
T Consensus 633 Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~-------------vDfisIGtnDLtq~~ 699 (782)
T TIGR01418 633 VMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKE-------------FDGFSIGSNDLTQLT 699 (782)
T ss_pred EEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHh-------------CCEEEECchHHHHHH
Confidence 7899999999999998888988874 237899999999999999999976 2345555554332
Q ss_pred --------chhhHh--HHHHHHHHHHHHHHHHHHhCCeEEE
Q 002112 601 --------DAGRLS--AAWQLYKTQEELVKVAKQYGVKLTM 631 (965)
Q Consensus 601 --------DgG~la--a~W~Ly~Aq~~L~~va~~~gV~l~~ 631 (965)
..|.+- -+=++.++-+++.+.|+++|+.+-+
T Consensus 700 lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgi 740 (782)
T TIGR01418 700 LGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGI 740 (782)
T ss_pred hCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 112111 1236888999999999999999876
No 46
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=39.02 E-value=28 Score=37.81 Aligned_cols=123 Identities=24% Similarity=0.279 Sum_probs=83.6
Q ss_pred cccCChHHHhch-HHHHHHHhccHHHHhhcCCeeEEE----EeeccCCcchhhHhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002112 557 PLFEKLADLEAA-PASVARLFSIDWYRNRISGKQEVM----IGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGVKLTM 631 (965)
Q Consensus 557 PLFETi~DL~~a-~~Im~~ll~~p~yr~~l~~~QeVM----lGYSDS~KDgG~laa~W~Ly~Aq~~L~~va~~~gV~l~~ 631 (965)
-.|||..|+++- -.|.+.|.+++...+|+. .|-|| +||-|-++=--.+.++=+| +|.++..+.||+..+
T Consensus 12 l~~e~~~~se~~p~~vy~~l~~D~ev~A~l~-maNv~av~RlgYNDHG~vHa~Iva~~Al-----~i~~lL~~~Gv~ps~ 85 (269)
T COG3294 12 LIEETLADSEAFPKDVYELLLNDEEVQAYLK-MANVMAVGRLGYNDHGPVHARIVANSAL-----AIYKLLLEKGVKPSG 85 (269)
T ss_pred cccccchhhhhchHHHHHHHhcCHHHHHHHH-HhhhhhhhhhcccCCCceeeeeccchHH-----HHHHHHHhcCCCccc
Confidence 368999999999 589999999999999993 23343 8999999988888877665 677788899999875
Q ss_pred e--------------------cCCCCCCCCCCCchhhhhhcCCCCcccCceeeecccchhhhhcCChhHHHHHHHHHHHH
Q 002112 632 F--------------------HGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAA 691 (965)
Q Consensus 632 F--------------------HGRGGsvgRGGGPt~~ailaqP~gs~~g~ir~TeQGEvI~~kyg~~~~A~r~Le~~~aa 691 (965)
. |-=|-||-|--++.|-+.++.+ .+ --.++--|.+|.-+.+-=.-.+.|
T Consensus 86 v~dg~gd~eD~~vivlLga~LHDIGnsVHRd~H~~~sa~La~~--Il---------drIL~kiy~~~~k~~~~rsevlhA 154 (269)
T COG3294 86 VTDGVGDEEDSPVIVLLGAYLHDIGNSVHRDDHELYSAVLALD--IL---------DRILSKIYPDPEKAVRVRSEVLHA 154 (269)
T ss_pred ccccCCchhhhhHHHHHHHHHHhccchhccccHHHHhHHHhHH--HH---------HHHhhhhcCCHHHHHhHHHHHHHH
Confidence 4 4445556666666666666553 11 112334455655555544444555
Q ss_pred HHHcc
Q 002112 692 TLEHG 696 (965)
Q Consensus 692 ~l~~s 696 (965)
+..+.
T Consensus 155 I~ch~ 159 (269)
T COG3294 155 IYCHD 159 (269)
T ss_pred hhccC
Confidence 54443
No 47
>PLN02801 beta-amylase
Probab=38.46 E-value=28 Score=41.90 Aligned_cols=34 Identities=32% Similarity=0.772 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEE---EecCCCCCCCCCC
Q 002112 607 AAWQLYKTQEELVKVAKQYGVKLT---MFHGRGGTVGRGG 643 (965)
Q Consensus 607 a~W~Ly~Aq~~L~~va~~~gV~l~---~FHGRGGsvgRGG 643 (965)
=+|+=|+ +|.++++++|.|+. =||..||.||-.-
T Consensus 71 YdWsgY~---~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~ 107 (517)
T PLN02801 71 YDWSAYR---SLFELVQSFGLKIQAIMSFHQCGGNVGDAV 107 (517)
T ss_pred cCcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 3788886 68899999999985 4999999998764
No 48
>PLN02905 beta-amylase
Probab=36.76 E-value=30 Score=42.55 Aligned_cols=34 Identities=35% Similarity=0.694 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCCCC
Q 002112 607 AAWQLYKTQEELVKVAKQYGVKLTM---FHGRGGTVGRGG 643 (965)
Q Consensus 607 a~W~Ly~Aq~~L~~va~~~gV~l~~---FHGRGGsvgRGG 643 (965)
=+|+=|+ +|.++++++|.|+.. ||..||.||-.-
T Consensus 320 YdWsgY~---~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~ 356 (702)
T PLN02905 320 YNWNGYK---RLFQMVRELKLKLQVVMSFHECGGNVGDDV 356 (702)
T ss_pred CCcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 3788886 789999999999875 999999998664
No 49
>PLN02705 beta-amylase
Probab=35.70 E-value=32 Score=42.16 Aligned_cols=33 Identities=30% Similarity=0.729 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCCC
Q 002112 607 AAWQLYKTQEELVKVAKQYGVKLTM---FHGRGGTVGRG 642 (965)
Q Consensus 607 a~W~Ly~Aq~~L~~va~~~gV~l~~---FHGRGGsvgRG 642 (965)
=+|+=|+ +|.++++++|.|+.. ||..||.||-.
T Consensus 302 YdWsgY~---~L~~mvr~~GLKlqvVmSFHqCGGNVGD~ 337 (681)
T PLN02705 302 YVWSGYR---ELFNIIREFKLKLQVVMAFHEYGGNASGN 337 (681)
T ss_pred CCcHHHH---HHHHHHHHcCCeEEEEEEeeccCCCCCCc
Confidence 3788886 789999999999875 99999998843
No 50
>PLN02161 beta-amylase
Probab=35.03 E-value=34 Score=41.19 Aligned_cols=54 Identities=28% Similarity=0.476 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCCCCCchhhhhhcCCCCcc-----cCceeeecccc
Q 002112 607 AAWQLYKTQEELVKVAKQYGVKLTM---FHGRGGTVGRGGGPTHLAILSQPPDTI-----HGSLRVTVQGE 669 (965)
Q Consensus 607 a~W~Ly~Aq~~L~~va~~~gV~l~~---FHGRGGsvgRGGGPt~~ailaqP~gs~-----~g~ir~TeQGE 669 (965)
=+|+-|+ +|.++++++|.|+.. ||..||.||--.+ ...|.... +-.|-.|.|-.
T Consensus 151 YdWsgY~---~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~------IpLP~WV~~~g~~~pDi~ftDr~G 212 (531)
T PLN02161 151 FKWSLYE---ELFRLISEAGLKLHVALCFHSNMHLFGGKGG------ISLPLWIREIGDVNKDIYYRDKNG 212 (531)
T ss_pred CCcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCccC------ccCCHHHHhhhccCCCceEEcCCC
Confidence 3798886 689999999999875 9999999987655 33554433 33567776654
No 51
>KOG3831 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.33 E-value=42 Score=34.09 Aligned_cols=48 Identities=31% Similarity=0.534 Sum_probs=39.7
Q ss_pred CChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCcchhhHhHHHHHHHHHHHHHHH
Q 002112 560 EKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKV 621 (965)
Q Consensus 560 ETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v 621 (965)
...+||+|-|.-+-..+.|-|. |||-|..-.-++.|++-||.+++...
T Consensus 61 dafedlenppaav~av~kn~~l--------------s~s~k~sal~t~~wsiikakrq~l~~ 108 (196)
T KOG3831|consen 61 DAFEDLENPPAAVLAVLKNRFL--------------SDSFKESALATACWSIIKAKRQLLKN 108 (196)
T ss_pred HHHHhccCChHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3468999999877777666553 89999999999999999999998653
No 52
>PF12133 Sars6: Open reading frame 6 from SARS coronavirus; InterPro: IPR022736 This entry represents small proteins, typically between 42 to 63 amino acids in length, which are uncharacterised.
Probab=30.86 E-value=12 Score=31.53 Aligned_cols=44 Identities=16% Similarity=0.291 Sum_probs=32.4
Q ss_pred HHHHHHhcCCccccccccccchHHHHHHHHHHHHcCCCCCCCCCHHHHH
Q 002112 433 FLRQVSTFGLSLVRLDIRQESERHTDVIDAITKHLGIGSYREWSEEKRQ 481 (965)
Q Consensus 433 lir~v~~FGfhla~LDiRQ~S~~H~~a~~el~~~~g~~~Y~~l~E~~r~ 481 (965)
||--.++||..+-.+||---|- +..+++.+.-.+|.+|||++-+
T Consensus 15 li~im~sf~~a~~~~~i~i~s~-----~~~l~~~l~k~~ys~ld~ee~m 58 (62)
T PF12133_consen 15 LIIIMRSFRIAIWNIQIIISSI-----VRQLFNPLDKKNYSELDDEEPM 58 (62)
T ss_pred HHHHHHHHHHHHHhHHhHHHHH-----HHHHhcccccccccccCccccc
Confidence 5556799999999999865443 5566665555589999997643
No 53
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=29.34 E-value=1.8e+02 Score=31.42 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCcchhhHHhccCCChhhHHHHHHHHHHc
Q 002112 501 KTEEIADVLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQREC 547 (965)
Q Consensus 501 ~s~~~~e~l~~f~~i~~~~~~~~~~yIISmt~sasDvL~vl~L~ke~ 547 (965)
.+|...+++..++.+...|.+.+. |+.|+++.+|++.++-+.+++
T Consensus 130 ~tp~~~~l~~~~~~~~~~gaDivK--ia~~a~~~~D~~~ll~~~~~~ 174 (228)
T TIGR01093 130 KTPSWEEIVERLEKALSYGADIVK--IAVMANSKEDVLTLLEITNKV 174 (228)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEE--EEeccCCHHHHHHHHHHHHHH
Confidence 345556778888888888776555 788999999999999887665
No 54
>PLN02389 biotin synthase
Probab=28.01 E-value=1.5e+02 Score=34.86 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhCCCcchhhHHhccCCChhhHHHHHHHHHHcC
Q 002112 504 EIADVLDTFHVISELPADSFGAYIISMATAPSDVLAVELLQRECR 548 (965)
Q Consensus 504 ~~~e~l~~f~~i~~~~~~~~~~yIISmt~sasDvL~vl~L~ke~G 548 (965)
...+.+++++.+++.|-..+...||.+-++..|+.+.+...++.+
T Consensus 211 s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~ 255 (379)
T PLN02389 211 SYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLP 255 (379)
T ss_pred CHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhcc
Confidence 457888888888888877888899999999999999988888764
No 55
>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT).
Probab=26.83 E-value=1.1e+02 Score=30.47 Aligned_cols=41 Identities=27% Similarity=0.639 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 002112 248 WKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTSEVTRDVCLLARMMAANLYFSQIED 320 (965)
Q Consensus 248 ~~avP~~~~~l~~~l~~~~~~~~~p~~~~~i~fgSWiGGDRDGNP~VT~~vT~~~l~~~r~~al~~y~~~l~~ 320 (965)
|-.+-.+.-+|..++.++ ||+-++|||.. .+++.|++++++
T Consensus 91 wGSlDalIGrLraafee~-------------------Gg~pe~NPf~~-------------~~vr~yLr~vr~ 131 (132)
T PF04852_consen 91 WGSLDALIGRLRAAFEEH-------------------GGHPEANPFAA-------------RAVRLYLREVRD 131 (132)
T ss_pred hccHHHHHHHHHHHHHHh-------------------CCCCCCCchhh-------------HHHHHHHHHHhc
Confidence 444455566677777665 45667999953 456788888753
No 56
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=25.51 E-value=4.1e+02 Score=31.77 Aligned_cols=112 Identities=14% Similarity=0.148 Sum_probs=60.2
Q ss_pred CccchhhHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhh-cccccCCCCCChHHHHHHHHHHHHHHhhhh--
Q 002112 174 TQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAF-RTDEIRRSPPTPQDEMRAGMSYFHETIWKG-- 250 (965)
Q Consensus 174 TEa~RrtvL~~~r~I~~~L~~~~~~~~~~~e~~~~~~~L~~~i~~LW-~T~eiR~~kPtv~DE~~~~l~y~~~~l~~a-- 250 (965)
++..+.=+.+-++++...|++.-...++.+...+..+.-.+.. .+| +--++|..+|+|.+-..-...+...++...
T Consensus 153 ~~~~~~Y~~~ql~~l~~~LEe~tG~kit~e~L~eaI~n~nr~~-~~~~e~~~l~~~~P~Pisg~dl~~~~~~~~~~~~~~ 231 (430)
T TIGR03191 153 TDARLDYVANQLHDGIEFVEKASGRKCDDELFIKAIKNEMRST-ARWADICALNKAKPAPLDEKTMYSLYVLAILHKSSQ 231 (430)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCccH
Confidence 4555666677778888888887777777765443333222222 225 567889999988884432222222333333
Q ss_pred -HHHHHHHHHHHHHhc---CCCCCCCCCCCcccccccCCCCCCCCC
Q 002112 251 -VPKFLRRVDTALKNI---GINERVPYNAPLIQFSSWMGGDRDGNP 292 (965)
Q Consensus 251 -vP~~~~~l~~~l~~~---~~~~~~p~~~~~i~fgSWiGGDRDGNP 292 (965)
.-++++.|.+.+++. |. ...|. ..+ |+ |++|-- |-|
T Consensus 232 ~~~~~~~~L~~el~~r~~~G~-~~~~~-e~~-Ri--l~~g~p-~~~ 271 (430)
T TIGR03191 232 WCADFMDELYEEVKDRVARGI-AAVPN-ERC-RL--MSDTQP-PWP 271 (430)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CcCCC-CCc-eE--EEeCCC-CCc
Confidence 234455555544442 21 11232 222 55 888765 444
No 57
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=22.15 E-value=78 Score=37.37 Aligned_cols=132 Identities=21% Similarity=0.260 Sum_probs=83.8
Q ss_pred CccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccCCcchhhHhHHHHHHHHHHHHHHHHHHhCC-----
Q 002112 553 LRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKQYGV----- 627 (965)
Q Consensus 553 l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~va~~~gV----- 627 (965)
.-++++|.+..-.+=|..+.+-.= ..=.|.+.=|-+ +|-+.-.++|++++-
T Consensus 75 ~h~sn~~~~~~~~~la~~L~~~s~----------~~d~vff~NSGa--------------EA~EaAiKlARk~~~~~~k~ 130 (404)
T COG4992 75 WHVSNLFYNEPQAELAEKLVELSP----------FADRVFFCNSGA--------------EANEAALKLARKYTGDPEKS 130 (404)
T ss_pred hhcccccCChHHHHHHHHHHhhCc----------cccEEEEcCCcH--------------HHHHHHHHHHHHHcCCCCCc
Confidence 446788888877777766655430 012344443332 677888899999976
Q ss_pred eEEE----ecCC-CCCCCCCCCchhhhhhc-CCCCcccCceeeecccchhhhhcCChhHHHHHHHHHHHHHHHccCCC--
Q 002112 628 KLTM----FHGR-GGTVGRGGGPTHLAILS-QPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFSAATLEHGMHP-- 699 (965)
Q Consensus 628 ~l~~----FHGR-GGsvgRGGGPt~~aila-qP~gs~~g~ir~TeQGEvI~~kyg~~~~A~r~Le~~~aa~l~~sl~~-- 699 (965)
+++- |||| .||++=||.|-++..-. +||| +....|++.+-...-++-=++|++..-+..
T Consensus 131 ~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g-------------~~~vpfnDi~al~~ai~~~taAvivEPIQGEg 197 (404)
T COG4992 131 KIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPG-------------FRHVPFNDIEALEAAIDEDTAAVIVEPIQGEG 197 (404)
T ss_pred EEEEEcCCcCCccceeeeccCChhhccCCCCCCCC-------------ceecCCCCHHHHHHHhccCeEEEEEecccCCC
Confidence 3332 8999 69999999998886554 4443 456889999887777777666665443321
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHh
Q 002112 700 -PVSPKPEWRALMDEMAVIATKEYRSI 725 (965)
Q Consensus 700 -~~~~~~~~~~~m~~ls~~s~~~Yr~l 725 (965)
-.+++++|-....+| |+.|-.|
T Consensus 198 GV~~~~~~fl~~lr~l----Cd~~g~L 220 (404)
T COG4992 198 GVIPAPPEFLKALREL----CDEHGAL 220 (404)
T ss_pred CCCCCCHHHHHHHHHH----HHHhCeE
Confidence 134456665444444 3445554
No 58
>PLN02626 malate synthase
Probab=20.86 E-value=2.2e+02 Score=35.07 Aligned_cols=95 Identities=15% Similarity=0.207 Sum_probs=61.5
Q ss_pred hHHhccCCChhhHHHHH----HHHHHcCCC-CCCccccccCChHHHhchHHHHHHHhccHHHHhhcCCeeEEEEeeccC-
Q 002112 525 AYIISMATAPSDVLAVE----LLQRECRVK-QPLRVVPLFEKLADLEAAPASVARLFSIDWYRNRISGKQEVMIGYSDS- 598 (965)
Q Consensus 525 ~yIISmt~sasDvL~vl----~L~ke~Gl~-~~l~VvPLFETi~DL~~a~~Im~~ll~~p~yr~~l~~~QeVMlGYSDS- 598 (965)
-|.+..++++.|+-..- ...+..|+. ..|.+.+|.||+...-+.++|+.++ |.|+ --.+.|.=|=
T Consensus 214 YfyLPKles~~Ear~w~dvf~~~E~~lGlp~GTIK~~vLIET~~A~f~meEIl~el------r~r~---agLn~GrwDyi 284 (551)
T PLN02626 214 FFYLPKMEHSREARLWNDVFEAAEKMAGIPRGSIRATVLIETLPAVFQMEEILYEL------RDHS---AGLNCGRWDYI 284 (551)
T ss_pred eEeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeccHHHHHHHHHHHHHh------hhhe---eeeecChHHHH
Confidence 34578888888876552 234566885 6899999999999999999999886 2333 1122332222
Q ss_pred -----------Cc---chhhHhHHHHHHHH-HHHHHHHHHHhCCe
Q 002112 599 -----------GK---DAGRLSAAWQLYKT-QEELVKVAKQYGVK 628 (965)
Q Consensus 599 -----------~K---DgG~laa~W~Ly~A-q~~L~~va~~~gV~ 628 (965)
++ |...++-+...-+| .+.++.+|.++|+.
T Consensus 285 fS~ik~l~~~~~~vlpDr~~vtM~~~f~rAY~~llV~ach~rG~~ 329 (551)
T PLN02626 285 FSFVKTFRAHPDRLLPDRVQVGMTQHFMKSYVDLLIKTCHKRGVH 329 (551)
T ss_pred hHHHHHhccCCCCCCCCccccchhhHHHHHHHHHHHHHHHhcCCc
Confidence 12 44444444444455 55788889998864
Done!