Query 002114
Match_columns 965
No_of_seqs 355 out of 1139
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 12:56:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rq8_A Conserved hypothetical 99.9 4.2E-26 1.4E-30 211.9 12.9 96 593-693 1-96 (104)
2 1jo0_A Hypothetical protein HI 99.9 8.8E-26 3E-30 207.7 13.1 95 593-693 2-96 (98)
3 1jo0_A Hypothetical protein HI 99.9 3.6E-25 1.2E-29 203.7 12.5 89 179-267 2-90 (98)
4 1rq8_A Conserved hypothetical 99.9 4.9E-25 1.7E-29 204.8 13.2 89 179-267 1-89 (104)
5 3ka5_A Ribosome-associated pro 53.9 28 0.00095 30.2 6.3 48 222-269 1-51 (65)
6 3k2t_A LMO2511 protein; lister 35.6 32 0.0011 29.0 3.7 48 222-269 1-51 (57)
7 3lyv_A Ribosome-associated fac 32.2 33 0.0011 29.8 3.4 48 222-269 2-52 (66)
8 4g5o_E G-protein-signaling mod 19.3 38 0.0013 24.3 1.0 18 925-942 6-23 (26)
9 3sbx_A Putative uncharacterize 17.5 1.4E+02 0.0047 30.3 5.1 37 598-635 127-163 (189)
10 2l5g_B Putative uncharacterize 17.2 1.5E+02 0.0051 24.0 4.1 34 709-742 8-41 (42)
No 1
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.93 E-value=4.2e-26 Score=211.91 Aligned_cols=96 Identities=23% Similarity=0.382 Sum_probs=90.9
Q ss_pred CCCHHHHHHHHhcccCCCceEEeccCCCCHHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHhCCEEEEeeecC
Q 002114 593 GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVN 672 (965)
Q Consensus 593 ~LT~eERk~LRkiGhkmkPvV~IGK~GVtdgVIeeIh~Alk~rELIKVk~~~~~~ed~keiA~~Le~~SGg~LVqv~k~~ 672 (965)
|||++||+|||++||+|+|+|+||++|||++|+++|++||++||||||+|.+++.++++++|+.||+.+||++||+
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~---- 76 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQV---- 76 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEE----
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEE----
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEccCCCCCCCcCCc
Q 002114 673 KGYAIILYRGKNYERPACLRP 693 (965)
Q Consensus 673 IG~tIILYRgKNY~rP~~l~P 693 (965)
||+++||||+++ ..|...+|
T Consensus 77 IG~~~VLYR~~~-~~~~i~~~ 96 (104)
T 1rq8_A 77 IGSMIVIYRESK-ENKEIELP 96 (104)
T ss_dssp ETTEEEEEECCC-SCCSCCCC
T ss_pred ECCEEEEEeCCC-CCCceecc
Confidence 999999999987 45554444
No 2
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.93 E-value=8.8e-26 Score=207.74 Aligned_cols=95 Identities=17% Similarity=0.324 Sum_probs=89.8
Q ss_pred CCCHHHHHHHHhcccCCCceEEeccCCCCHHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHhCCEEEEeeecC
Q 002114 593 GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVN 672 (965)
Q Consensus 593 ~LT~eERk~LRkiGhkmkPvV~IGK~GVtdgVIeeIh~Alk~rELIKVk~~~~~~ed~keiA~~Le~~SGg~LVqv~k~~ 672 (965)
+||++||+|||++||+++|+|+||++|||++|+++|++||++||||||+|.++++++++++|++|++.+||++||+
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~---- 77 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQT---- 77 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEE----
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEE----
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEccCCCCCCCcCCc
Q 002114 673 KGYAIILYRGKNYERPACLRP 693 (965)
Q Consensus 673 IG~tIILYRgKNY~rP~~l~P 693 (965)
||+++||||++.. |...+|
T Consensus 78 IG~~~vLyR~~~~--~~i~lp 96 (98)
T 1jo0_A 78 IGHILVLYRPSEE--AKIQLP 96 (98)
T ss_dssp ETTEEEEECCCSS--CCBCCC
T ss_pred ECCEEEEEccCCC--CCcCCC
Confidence 9999999999854 444444
No 3
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.92 E-value=3.6e-25 Score=203.73 Aligned_cols=89 Identities=26% Similarity=0.372 Sum_probs=87.0
Q ss_pred cCCHHHHHHHHhcccCCCCeEEeCCCCCCHHHHHHHHHHHHhCCeEEEEEcCCchhhHHHHHHHHHHHhCCeEEEEECcE
Q 002114 179 KLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSK 258 (965)
Q Consensus 179 ~LT~kErr~LRklA~~Lkp~V~IGK~GLTq~VVeeI~~aWkk~ELVKIKv~~~~~~dmk~~aE~LE~kTGG~VV~riG~t 258 (965)
+||++|+++||++||+|+|+|+|||+|||++|+++|+++|++||||||+|.+++.+|++++|++|+++|||++||++|++
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~ 81 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHI 81 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTE
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 002114 259 IILYRGADY 267 (965)
Q Consensus 259 iVLYRGknY 267 (965)
+||||++..
T Consensus 82 ~vLyR~~~~ 90 (98)
T 1jo0_A 82 LVLYRPSEE 90 (98)
T ss_dssp EEEECCCSS
T ss_pred EEEEccCCC
Confidence 999999854
No 4
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.92 E-value=4.9e-25 Score=204.80 Aligned_cols=89 Identities=28% Similarity=0.413 Sum_probs=87.2
Q ss_pred cCCHHHHHHHHhcccCCCCeEEeCCCCCCHHHHHHHHHHHHhCCeEEEEEcCCchhhHHHHHHHHHHHhCCeEEEEECcE
Q 002114 179 KLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSK 258 (965)
Q Consensus 179 ~LT~kErr~LRklA~~Lkp~V~IGK~GLTq~VVeeI~~aWkk~ELVKIKv~~~~~~dmk~~aE~LE~kTGG~VV~riG~t 258 (965)
|||++|+++||++||+|+|+|+|||+|||++|+++|+++|++||||||+|.+++.+|++++|++|+++|||.+||++|++
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~ 80 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSM 80 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTE
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 002114 259 IILYRGADY 267 (965)
Q Consensus 259 iVLYRGknY 267 (965)
+||||++..
T Consensus 81 ~VLYR~~~~ 89 (104)
T 1rq8_A 81 IVIYRESKE 89 (104)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999999863
No 5
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=53.87 E-value=28 Score=30.25 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=40.9
Q ss_pred CeEEEEEcCCchhhHHHHHHHHHHHhCCeEEEEE---CcEEEEEecCCCCC
Q 002114 222 EVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS---GSKIILYRGADYKY 269 (965)
Q Consensus 222 ELVKIKv~~~~~~dmk~~aE~LE~kTGG~VV~ri---G~tiVLYRGknY~~ 269 (965)
++|+.|-....+.+.++++.+++-.-.--+|-+. |.+-|+||.++.++
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR~dG~y 51 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGNY 51 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTTSCE
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhCCCcEEEEEeCCCCCEEEEEEeCCCCE
Confidence 5788888788889999999999988777778776 88999999988765
No 6
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=35.59 E-value=32 Score=29.00 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=35.8
Q ss_pred CeEEEEEcCCchhhHHHHHHHHHHHhCCeEEEEE---CcEEEEEecCCCCC
Q 002114 222 EVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS---GSKIILYRGADYKY 269 (965)
Q Consensus 222 ELVKIKv~~~~~~dmk~~aE~LE~kTGG~VV~ri---G~tiVLYRGknY~~ 269 (965)
++|+.|-......+.+++..+++-.-.--+|-+. |.+-|+||.++.++
T Consensus 1 ~ivr~K~~~~kpmsveEAv~qmel~gh~F~vF~n~~t~~~nVvYrR~dG~y 51 (57)
T 3k2t_A 1 EIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGKY 51 (57)
T ss_dssp CCCCCCC---CCBCHHHHHHHHHHHTCSEEEEEBSSSCCEEEEEECTTSCE
T ss_pred CeEEEEeccCCCCCHHHHHHHHHhCCCcEEEEEcCCCCCEEEEEEeCCCCE
Confidence 3556666566678899999999988777777776 88999999987654
No 7
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=32.24 E-value=33 Score=29.81 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=38.7
Q ss_pred CeEEEEEcCCchhhHHHHHHHHHHHhCCeEEEEE---CcEEEEEecCCCCC
Q 002114 222 EVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS---GSKIILYRGADYKY 269 (965)
Q Consensus 222 ELVKIKv~~~~~~dmk~~aE~LE~kTGG~VV~ri---G~tiVLYRGknY~~ 269 (965)
++|+.|-....+.+.++++.+++-.-.--+|-+. |.+-|+||.++.++
T Consensus 2 ~iVr~K~~~~kpMsveEAv~qMel~gh~F~vF~n~etg~~nVVYRR~dG~y 52 (66)
T 3lyv_A 2 QVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGNL 52 (66)
T ss_dssp CCCCCCCCCCCEECHHHHHHHHHTTTCSEEEEEETTTCSEEEEEECTTSSE
T ss_pred eEEEEEEccCCCCCHHHHHHHHHcCCCcEEEEEeCCCCCEEEEEEECCCCE
Confidence 4666666667788999999999987666777776 88999999988765
No 8
>4g5o_E G-protein-signaling modulator 2; galphai, goloco, galpha signaling, asymmetric cell division, cycle-signaling protein complex; HET: GDP CIT; 2.90A {Mus musculus} PDB: 4g5q_E* 4g5r_E*
Probab=19.35 E-value=38 Score=24.30 Aligned_cols=18 Identities=50% Similarity=0.665 Sum_probs=15.1
Q ss_pred hHHHHHHHhhccCCceee
Q 002114 925 RLLLRKQALRMKKRPVLA 942 (965)
Q Consensus 925 rl~lrkqal~~k~~p~~~ 942 (965)
-|+||.||-+|-..-||-
T Consensus 6 slilrsqakrmdeqrvll 23 (26)
T 4g5o_E 6 SLILRSQAKRMDEQRVLL 23 (26)
T ss_dssp HHHHHHHHCSCGGGCBCC
T ss_pred HHHHHHHHHhhhHHHhhh
Confidence 389999999999887763
No 9
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=17.50 E-value=1.4e+02 Score=30.30 Aligned_cols=37 Identities=16% Similarity=0.312 Sum_probs=29.4
Q ss_pred HHHHHHhcccCCCceEEeccCCCCHHHHHHHHHHHhcc
Q 002114 598 ERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHR 635 (965)
Q Consensus 598 ERk~LRkiGhkmkPvV~IGK~GVtdgVIeeIh~Alk~r 635 (965)
|---+..+|.+-||++.++.+|.|+.++.-++ ++-..
T Consensus 127 e~lt~~qlg~~~kPvvlln~~gfw~~l~~~l~-~~~~~ 163 (189)
T 3sbx_A 127 DVWTEGYLGMHDKSIVVLDPWGHFDGLRAWLS-ELADT 163 (189)
T ss_dssp HHHHHHHTTSCCCCEEEECTTCTTHHHHHHHH-HHHHT
T ss_pred HHHHHHHhcccCCCEEEecCCccchHHHHHHH-HHHHC
Confidence 34456778888899999999999999999887 44333
No 10
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=17.21 E-value=1.5e+02 Score=23.98 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 002114 709 AQRRQSLKLHVLELTRNIEKLKLQLVKDKEANSL 742 (965)
Q Consensus 709 ~qr~~sl~~~i~~l~~~i~~l~~~l~~~~~~~~~ 742 (965)
.|-++..-.-|.+-++.|.+|+.++...+.+.++
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a~k 41 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQLEEEAAK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3778888888999999999999999887776554
Done!