Query 002115
Match_columns 965
No_of_seqs 568 out of 4485
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 16:50:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.1E-91 6.8E-96 823.5 45.2 837 15-923 9-866 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.1E-64 6.6E-69 630.6 49.1 683 175-943 181-908 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.2E-44 4.8E-49 388.1 17.1 278 183-467 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 4E-26 8.7E-31 288.1 18.0 365 541-940 70-464 (968)
5 PLN00113 leucine-rich repeat r 99.9 4.2E-26 9E-31 288.0 15.6 355 562-940 186-559 (968)
6 KOG0444 Cytoskeletal regulator 99.9 1.9E-26 4.2E-31 245.0 -4.6 343 540-942 32-376 (1255)
7 KOG4194 Membrane glycoprotein 99.9 8E-23 1.7E-27 216.7 3.2 348 540-936 78-447 (873)
8 KOG0444 Cytoskeletal regulator 99.9 1.6E-23 3.4E-28 223.0 -3.2 344 531-935 46-393 (1255)
9 KOG4194 Membrane glycoprotein 99.8 3.3E-21 7.2E-26 204.5 7.8 339 564-940 78-428 (873)
10 KOG0472 Leucine-rich repeat pr 99.8 5.6E-23 1.2E-27 208.7 -6.3 261 542-849 47-308 (565)
11 PLN03210 Resistant to P. syrin 99.8 2.4E-19 5.1E-24 226.2 16.7 325 583-943 550-884 (1153)
12 KOG0472 Leucine-rich repeat pr 99.7 4.2E-20 9.2E-25 187.9 -8.9 244 562-849 43-286 (565)
13 KOG0618 Serine/threonine phosp 99.6 1.3E-17 2.9E-22 187.3 -4.3 338 543-939 24-418 (1081)
14 PRK15387 E3 ubiquitin-protein 99.5 2.3E-14 4.9E-19 167.5 12.5 93 592-706 223-315 (788)
15 KOG0618 Serine/threonine phosp 99.5 4.9E-16 1.1E-20 174.8 -2.0 344 548-938 6-393 (1081)
16 PRK15387 E3 ubiquitin-protein 99.4 2.6E-13 5.6E-18 158.7 11.6 256 544-919 205-460 (788)
17 PRK15370 E3 ubiquitin-protein 99.4 1.1E-13 2.5E-18 162.9 7.6 138 541-705 179-316 (754)
18 PRK04841 transcriptional regul 99.4 1.8E-11 3.8E-16 154.4 27.5 293 177-517 13-332 (903)
19 KOG0617 Ras suppressor protein 99.4 2.7E-15 5.8E-20 135.4 -6.0 163 589-836 31-194 (264)
20 PRK15370 E3 ubiquitin-protein 99.4 4.6E-13 9.9E-18 157.8 10.3 116 565-704 179-294 (754)
21 KOG4658 Apoptotic ATPase [Sign 99.4 1.1E-13 2.3E-18 165.6 4.6 324 562-938 521-856 (889)
22 PRK00411 cdc6 cell division co 99.4 2.7E-10 5.8E-15 128.6 30.9 316 175-506 27-374 (394)
23 KOG0617 Ras suppressor protein 99.4 1.4E-14 3E-19 130.9 -5.6 145 562-720 31-176 (264)
24 KOG4237 Extracellular matrix p 99.3 3.2E-14 6.9E-19 145.5 -6.7 296 552-916 58-358 (498)
25 cd00116 LRR_RI Leucine-rich re 99.3 3.9E-13 8.5E-18 147.6 -0.6 118 562-679 21-147 (319)
26 KOG4237 Extracellular matrix p 99.3 2.5E-13 5.3E-18 139.1 -2.0 274 540-849 67-357 (498)
27 TIGR03015 pepcterm_ATPase puta 99.2 1.3E-09 2.9E-14 116.0 24.3 182 205-391 43-242 (269)
28 TIGR02928 orc1/cdc6 family rep 99.2 8.6E-09 1.9E-13 115.1 28.9 300 176-493 13-351 (365)
29 cd00116 LRR_RI Leucine-rich re 99.2 8.4E-12 1.8E-16 137.0 4.5 276 584-885 16-318 (319)
30 COG2909 MalT ATP-dependent tra 99.1 7.4E-09 1.6E-13 117.7 24.3 297 177-518 18-339 (894)
31 PF01637 Arch_ATPase: Archaeal 99.1 5.8E-10 1.3E-14 116.3 14.2 194 180-386 1-233 (234)
32 PRK00080 ruvB Holliday junctio 99.1 7.2E-10 1.6E-14 120.9 13.4 277 177-492 24-310 (328)
33 TIGR00635 ruvB Holliday juncti 99.1 4E-09 8.6E-14 114.5 17.8 276 178-492 4-289 (305)
34 PF05729 NACHT: NACHT domain 99.0 2.4E-09 5.3E-14 104.9 11.8 143 206-354 1-163 (166)
35 PTZ00112 origin recognition co 98.9 4E-07 8.8E-12 104.6 25.8 213 177-391 754-986 (1164)
36 KOG0532 Leucine-rich repeat (L 98.8 1.9E-10 4.1E-15 123.7 -3.8 178 583-825 90-270 (722)
37 PRK06893 DNA replication initi 98.7 3E-07 6.6E-12 94.4 16.4 151 206-387 40-203 (229)
38 PRK13342 recombination factor 98.7 5E-07 1.1E-11 101.6 17.2 178 178-389 12-198 (413)
39 COG2256 MGS1 ATPase related to 98.7 1.3E-07 2.8E-12 98.9 10.9 172 176-382 28-207 (436)
40 KOG3207 Beta-tubulin folding c 98.6 9.2E-09 2E-13 107.7 1.6 236 595-916 97-338 (505)
41 PF13401 AAA_22: AAA domain; P 98.6 1E-07 2.3E-12 89.0 8.5 116 204-323 3-125 (131)
42 KOG1909 Ran GTPase-activating 98.6 1.2E-08 2.7E-13 104.0 1.5 91 587-679 26-130 (382)
43 PF05496 RuvB_N: Holliday junc 98.6 4.6E-07 1E-11 88.7 11.9 182 177-391 23-225 (233)
44 PF14580 LRR_9: Leucine-rich r 98.6 6.3E-08 1.4E-12 93.1 5.4 127 562-704 17-151 (175)
45 COG4886 Leucine-rich repeat (L 98.6 2.1E-08 4.6E-13 113.3 2.4 107 587-703 112-219 (394)
46 COG3899 Predicted ATPase [Gene 98.6 2.4E-06 5.3E-11 103.6 20.1 314 179-516 1-385 (849)
47 TIGR03420 DnaA_homol_Hda DnaA 98.5 1.2E-06 2.6E-11 90.5 14.5 169 183-388 22-202 (226)
48 KOG3207 Beta-tubulin folding c 98.5 3.8E-08 8.2E-13 103.2 2.8 160 540-707 121-285 (505)
49 PRK07003 DNA polymerase III su 98.5 1.1E-05 2.4E-10 92.8 22.2 184 178-388 16-222 (830)
50 PRK05564 DNA polymerase III su 98.5 2.9E-06 6.3E-11 92.0 17.0 179 178-386 4-189 (313)
51 PF14580 LRR_9: Leucine-rich r 98.5 3E-08 6.5E-13 95.3 1.1 109 587-707 15-127 (175)
52 PRK14961 DNA polymerase III su 98.5 6.4E-06 1.4E-10 90.9 19.5 193 178-386 16-219 (363)
53 KOG0532 Leucine-rich repeat (L 98.5 6.3E-09 1.4E-13 112.3 -4.2 193 591-848 75-270 (722)
54 PRK04195 replication factor C 98.5 1.5E-05 3.1E-10 91.8 22.8 247 178-466 14-271 (482)
55 KOG4341 F-box protein containi 98.5 1.4E-08 3E-13 105.9 -2.3 162 787-965 292-457 (483)
56 PRK12402 replication factor C 98.5 3.9E-06 8.4E-11 92.7 17.0 198 178-386 15-225 (337)
57 COG4886 Leucine-rich repeat (L 98.5 8.1E-08 1.8E-12 108.6 3.5 103 595-707 97-200 (394)
58 PTZ00202 tuzin; Provisional 98.5 9.5E-06 2.1E-10 86.8 18.4 171 172-354 256-434 (550)
59 PRK14963 DNA polymerase III su 98.5 9.7E-07 2.1E-11 100.4 11.8 197 178-384 14-214 (504)
60 cd00009 AAA The AAA+ (ATPases 98.4 1.8E-06 3.9E-11 82.5 11.9 125 181-325 1-131 (151)
61 PRK14949 DNA polymerase III su 98.4 5.2E-06 1.1E-10 97.4 17.5 184 178-388 16-221 (944)
62 PRK14960 DNA polymerase III su 98.4 6.7E-06 1.5E-10 93.6 17.8 193 178-386 15-218 (702)
63 PF13191 AAA_16: AAA ATPase do 98.4 5.6E-07 1.2E-11 89.9 8.3 48 179-229 1-48 (185)
64 PF13173 AAA_14: AAA domain 98.4 1.2E-06 2.6E-11 81.1 9.6 119 206-346 3-127 (128)
65 COG1474 CDC6 Cdc6-related prot 98.4 2.7E-05 5.9E-10 84.8 20.9 206 178-387 17-238 (366)
66 PRK06645 DNA polymerase III su 98.4 1.4E-05 2.9E-10 90.7 19.0 194 178-384 21-226 (507)
67 KOG1909 Ran GTPase-activating 98.4 6.6E-08 1.4E-12 98.8 0.4 264 613-916 22-310 (382)
68 PRK14957 DNA polymerase III su 98.4 1.1E-05 2.3E-10 92.0 18.0 185 178-389 16-223 (546)
69 PLN03150 hypothetical protein; 98.4 7.5E-07 1.6E-11 105.4 8.7 105 592-702 419-524 (623)
70 PLN03150 hypothetical protein; 98.4 4.3E-07 9.2E-12 107.5 6.2 107 566-681 420-527 (623)
71 PRK12323 DNA polymerase III su 98.4 1E-05 2.3E-10 91.8 16.7 199 178-387 16-225 (700)
72 PRK00440 rfc replication facto 98.3 1.8E-05 3.8E-10 86.7 18.1 181 178-385 17-201 (319)
73 TIGR02903 spore_lon_C ATP-depe 98.3 1.3E-05 2.7E-10 94.2 17.4 172 178-355 154-367 (615)
74 PLN03025 replication factor C 98.3 1.4E-05 2.9E-10 86.9 16.4 182 178-384 13-197 (319)
75 cd01128 rho_factor Transcripti 98.3 1E-06 2.2E-11 90.4 6.8 91 204-295 15-114 (249)
76 PRK14956 DNA polymerase III su 98.3 1.4E-05 3.1E-10 88.5 15.9 191 178-384 18-219 (484)
77 PRK08727 hypothetical protein; 98.3 1.9E-05 4.1E-10 81.3 15.9 148 206-384 42-201 (233)
78 KOG1259 Nischarin, modulator o 98.3 1.9E-07 4.1E-12 92.9 0.0 58 619-679 327-384 (490)
79 PRK09112 DNA polymerase III su 98.3 4.5E-05 9.7E-10 82.9 18.3 197 177-388 22-241 (351)
80 PRK14964 DNA polymerase III su 98.2 3.7E-05 8E-10 86.4 17.9 181 178-384 13-214 (491)
81 PRK07994 DNA polymerase III su 98.2 2.4E-05 5.2E-10 90.6 16.9 195 178-388 16-221 (647)
82 PRK14962 DNA polymerase III su 98.2 4.2E-05 9.1E-10 86.5 18.5 200 178-404 14-239 (472)
83 PRK05896 DNA polymerase III su 98.2 3.4E-05 7.3E-10 88.0 17.5 195 178-388 16-222 (605)
84 PRK08691 DNA polymerase III su 98.2 2.5E-05 5.4E-10 90.0 16.4 179 178-386 16-219 (709)
85 PRK14951 DNA polymerase III su 98.2 3.2E-05 6.9E-10 89.5 17.4 197 178-387 16-225 (618)
86 TIGR02397 dnaX_nterm DNA polym 98.2 7.3E-05 1.6E-09 83.2 19.9 183 178-388 14-219 (355)
87 PRK14958 DNA polymerase III su 98.2 3.4E-05 7.3E-10 88.2 17.0 183 178-386 16-219 (509)
88 PRK07471 DNA polymerase III su 98.2 6E-05 1.3E-09 82.4 18.2 197 178-388 19-239 (365)
89 PRK09376 rho transcription ter 98.2 2.7E-06 5.8E-11 90.8 7.3 102 188-295 157-267 (416)
90 TIGR00678 holB DNA polymerase 98.2 3.6E-05 7.8E-10 76.7 15.2 91 283-383 95-187 (188)
91 PRK09087 hypothetical protein; 98.2 3E-05 6.4E-10 79.1 14.6 141 205-386 44-194 (226)
92 PRK14955 DNA polymerase III su 98.2 4.4E-05 9.5E-10 85.4 17.0 200 178-386 16-227 (397)
93 PRK13341 recombination factor 98.2 1.3E-05 2.8E-10 94.8 13.1 169 178-382 28-212 (725)
94 KOG2028 ATPase related to the 98.2 2E-05 4.3E-10 81.0 12.5 157 203-381 160-330 (554)
95 KOG1259 Nischarin, modulator o 98.2 4.4E-07 9.6E-12 90.3 0.6 125 540-680 284-410 (490)
96 PRK08084 DNA replication initi 98.2 6.1E-05 1.3E-09 77.7 16.2 152 205-387 45-209 (235)
97 PRK07940 DNA polymerase III su 98.2 6.1E-05 1.3E-09 83.0 17.1 193 178-387 5-213 (394)
98 PRK08903 DnaA regulatory inact 98.1 4.4E-05 9.5E-10 78.8 14.9 153 204-391 41-203 (227)
99 PRK09111 DNA polymerase III su 98.1 8.8E-05 1.9E-09 86.1 18.1 197 178-387 24-233 (598)
100 KOG0989 Replication factor C, 98.1 3.2E-05 6.9E-10 78.3 12.4 183 178-381 36-224 (346)
101 PF14516 AAA_35: AAA-like doma 98.1 0.0005 1.1E-08 74.8 22.8 202 176-394 9-246 (331)
102 PRK14969 DNA polymerase III su 98.1 6.8E-05 1.5E-09 86.4 16.7 181 178-384 16-217 (527)
103 PF13855 LRR_8: Leucine rich r 98.1 3.2E-06 7E-11 66.4 4.1 57 621-679 1-59 (61)
104 PF05621 TniB: Bacterial TniB 98.1 0.00011 2.4E-09 75.8 16.3 201 178-382 34-256 (302)
105 KOG4341 F-box protein containi 98.1 2.7E-07 5.8E-12 96.5 -2.9 144 788-947 267-420 (483)
106 PRK14970 DNA polymerase III su 98.1 0.00014 3E-09 81.1 18.1 181 178-384 17-206 (367)
107 TIGR01242 26Sp45 26S proteasom 98.1 4.6E-05 1E-09 84.5 14.2 180 176-381 120-328 (364)
108 COG3903 Predicted ATPase [Gene 98.1 1.2E-05 2.6E-10 85.3 8.8 269 204-491 13-291 (414)
109 PRK07764 DNA polymerase III su 98.1 0.0001 2.2E-09 88.6 17.7 191 178-384 15-218 (824)
110 PRK05642 DNA replication initi 98.1 0.00012 2.6E-09 75.4 15.9 152 205-387 45-208 (234)
111 KOG2227 Pre-initiation complex 98.1 0.00012 2.6E-09 78.5 15.9 213 176-390 148-375 (529)
112 PRK14959 DNA polymerase III su 98.0 0.00014 3.1E-09 83.5 17.4 198 178-391 16-225 (624)
113 PRK14952 DNA polymerase III su 98.0 0.00021 4.6E-09 82.5 18.5 198 178-391 13-224 (584)
114 PRK14954 DNA polymerase III su 98.0 0.00022 4.9E-09 82.9 18.6 201 178-387 16-229 (620)
115 KOG2982 Uncharacterized conser 98.0 3.1E-06 6.8E-11 84.5 2.9 207 588-846 68-287 (418)
116 PF00308 Bac_DnaA: Bacterial d 98.0 0.00023 5E-09 72.4 16.5 181 179-384 10-205 (219)
117 PRK14950 DNA polymerase III su 98.0 0.00011 2.3E-09 86.4 16.1 195 178-387 16-221 (585)
118 PRK14953 DNA polymerase III su 98.0 0.00035 7.6E-09 79.5 19.5 184 178-388 16-221 (486)
119 KOG2120 SCF ubiquitin ligase, 98.0 3.3E-07 7.2E-12 91.3 -4.6 164 742-939 204-374 (419)
120 TIGR00767 rho transcription te 98.0 2.8E-05 6.1E-10 83.6 9.3 91 204-295 167-266 (415)
121 COG2255 RuvB Holliday junction 98.0 5.8E-05 1.2E-09 75.6 10.7 177 178-387 26-223 (332)
122 COG5238 RNA1 Ran GTPase-activa 98.0 2E-06 4.3E-11 84.8 0.4 265 587-916 26-315 (388)
123 PRK14087 dnaA chromosomal repl 97.9 0.00022 4.8E-09 80.6 16.7 167 205-389 141-321 (450)
124 PRK07133 DNA polymerase III su 97.9 0.00036 7.8E-09 81.5 18.6 190 178-386 18-218 (725)
125 PRK14971 DNA polymerase III su 97.9 0.00037 8E-09 81.6 18.8 181 178-385 17-220 (614)
126 KOG2543 Origin recognition com 97.9 0.00069 1.5E-08 71.0 18.3 167 177-353 5-192 (438)
127 KOG0531 Protein phosphatase 1, 97.9 1.7E-06 3.8E-11 97.8 -0.5 82 587-679 91-172 (414)
128 PF13855 LRR_8: Leucine rich r 97.9 5.7E-06 1.2E-10 65.0 2.5 59 789-849 1-60 (61)
129 CHL00181 cbbX CbbX; Provisiona 97.9 0.00093 2E-08 70.8 19.7 134 206-355 60-210 (287)
130 PRK11331 5-methylcytosine-spec 97.9 5.2E-05 1.1E-09 83.1 10.4 120 178-309 175-298 (459)
131 PHA02544 44 clamp loader, smal 97.9 0.0002 4.3E-09 78.2 14.8 149 177-352 20-171 (316)
132 PRK08451 DNA polymerase III su 97.9 0.00067 1.5E-08 77.2 19.1 180 178-387 14-218 (535)
133 KOG0531 Protein phosphatase 1, 97.9 2.5E-06 5.3E-11 96.6 -0.7 60 617-679 91-150 (414)
134 PF05673 DUF815: Protein of un 97.9 0.00053 1.2E-08 68.6 15.7 124 175-325 24-152 (249)
135 PF12799 LRR_4: Leucine Rich r 97.9 1.8E-05 3.8E-10 56.8 3.9 38 622-661 2-39 (44)
136 PRK06305 DNA polymerase III su 97.9 0.00054 1.2E-08 77.5 17.8 182 178-387 17-223 (451)
137 PRK14948 DNA polymerase III su 97.8 0.00076 1.6E-08 79.1 19.2 196 178-387 16-222 (620)
138 TIGR02880 cbbX_cfxQ probable R 97.8 0.00077 1.7E-08 71.5 17.5 133 207-355 60-209 (284)
139 TIGR02881 spore_V_K stage V sp 97.8 0.00043 9.3E-09 72.9 15.1 161 179-355 7-192 (261)
140 TIGR00362 DnaA chromosomal rep 97.8 0.00091 2E-08 75.5 18.4 157 205-383 136-306 (405)
141 PRK03992 proteasome-activating 97.8 0.00027 5.8E-09 78.7 13.7 158 177-355 130-316 (389)
142 PRK07399 DNA polymerase III su 97.8 0.0022 4.8E-08 68.8 20.0 196 178-387 4-221 (314)
143 PRK14965 DNA polymerase III su 97.7 0.00076 1.7E-08 78.8 17.1 196 178-389 16-223 (576)
144 PRK12422 chromosomal replicati 97.7 0.00081 1.8E-08 75.7 16.2 134 205-356 141-286 (445)
145 KOG2120 SCF ubiquitin ligase, 97.7 1.8E-06 3.8E-11 86.3 -4.5 117 742-885 254-374 (419)
146 PRK06647 DNA polymerase III su 97.7 0.0019 4.1E-08 74.9 19.1 194 178-387 16-220 (563)
147 PRK06620 hypothetical protein; 97.7 0.0015 3.3E-08 66.0 16.3 132 206-382 45-184 (214)
148 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00049 1.1E-08 83.9 14.7 155 178-354 187-363 (852)
149 PRK14086 dnaA chromosomal repl 97.6 0.0035 7.7E-08 72.0 19.8 154 206-381 315-482 (617)
150 PRK14088 dnaA chromosomal repl 97.6 0.0028 6E-08 71.7 18.8 157 205-382 130-300 (440)
151 PRK15386 type III secretion pr 97.6 0.00018 4E-09 77.9 8.9 66 617-688 48-113 (426)
152 COG0466 Lon ATP-dependent Lon 97.6 0.0021 4.4E-08 73.1 17.2 166 177-354 322-508 (782)
153 PRK10787 DNA-binding ATP-depen 97.6 0.0019 4E-08 78.0 18.3 166 177-354 321-506 (784)
154 PF00004 AAA: ATPase family as 97.6 0.00017 3.7E-09 67.1 7.7 96 208-323 1-111 (132)
155 TIGR02639 ClpA ATP-dependent C 97.6 0.00066 1.4E-08 82.3 14.3 156 178-354 182-358 (731)
156 COG0593 DnaA ATPase involved i 97.6 0.012 2.7E-07 64.2 22.2 138 204-358 112-261 (408)
157 KOG1859 Leucine-rich repeat pr 97.6 7.6E-06 1.7E-10 91.3 -2.2 20 556-576 102-121 (1096)
158 PRK05563 DNA polymerase III su 97.6 0.0032 7E-08 73.3 18.9 192 178-385 16-218 (559)
159 PRK05707 DNA polymerase III su 97.5 0.0019 4.2E-08 69.6 15.5 97 283-387 105-203 (328)
160 TIGR00763 lon ATP-dependent pr 97.5 0.0052 1.1E-07 75.0 21.0 165 178-354 320-505 (775)
161 COG3267 ExeA Type II secretory 97.5 0.0065 1.4E-07 60.7 17.3 182 204-390 50-248 (269)
162 PF12799 LRR_4: Leucine Rich r 97.5 0.00011 2.4E-09 52.7 3.8 41 591-639 1-41 (44)
163 PRK00149 dnaA chromosomal repl 97.5 0.0025 5.4E-08 72.9 16.9 158 205-384 148-319 (450)
164 CHL00095 clpC Clp protease ATP 97.5 0.00076 1.6E-08 82.8 13.2 155 178-353 179-353 (821)
165 PRK08116 hypothetical protein; 97.5 0.00035 7.6E-09 73.3 8.8 104 206-324 115-221 (268)
166 TIGR00602 rad24 checkpoint pro 97.5 0.00078 1.7E-08 78.3 12.3 52 176-228 82-133 (637)
167 PRK10536 hypothetical protein; 97.5 0.0023 5E-08 65.0 13.9 136 178-325 55-214 (262)
168 KOG2004 Mitochondrial ATP-depe 97.4 0.0089 1.9E-07 67.8 19.1 167 176-354 409-596 (906)
169 KOG1859 Leucine-rich repeat pr 97.4 8.2E-06 1.8E-10 91.1 -4.4 111 583-706 179-292 (1096)
170 smart00382 AAA ATPases associa 97.4 0.00083 1.8E-08 63.4 9.9 87 206-296 3-90 (148)
171 KOG3665 ZYG-1-like serine/thre 97.4 0.00012 2.6E-09 86.5 4.2 130 540-681 122-262 (699)
172 KOG4579 Leucine-rich repeat (L 97.4 2.5E-05 5.5E-10 69.1 -1.2 104 592-702 28-132 (177)
173 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0028 6E-08 78.2 15.4 136 178-323 565-717 (852)
174 PRK08769 DNA polymerase III su 97.3 0.0067 1.5E-07 64.8 16.0 96 283-388 112-209 (319)
175 PF13177 DNA_pol3_delta2: DNA 97.3 0.0051 1.1E-07 59.2 13.8 139 182-342 1-162 (162)
176 TIGR02639 ClpA ATP-dependent C 97.3 0.0028 6.1E-08 76.9 14.9 134 178-323 454-603 (731)
177 COG0542 clpA ATP-binding subun 97.3 0.00078 1.7E-08 78.7 9.3 138 178-323 491-643 (786)
178 TIGR03689 pup_AAA proteasome A 97.3 0.004 8.7E-08 70.6 14.7 165 178-354 182-378 (512)
179 PRK11034 clpA ATP-dependent Cl 97.3 0.0018 3.9E-08 77.4 12.4 156 179-354 187-362 (758)
180 KOG3665 ZYG-1-like serine/thre 97.3 0.00012 2.5E-09 86.6 2.5 89 667-759 171-261 (699)
181 PRK10865 protein disaggregatio 97.3 0.0025 5.5E-08 78.1 13.9 136 178-323 568-720 (857)
182 PRK08058 DNA polymerase III su 97.3 0.0057 1.2E-07 66.5 15.1 163 179-353 6-181 (329)
183 PF04665 Pox_A32: Poxvirus A32 97.3 0.00097 2.1E-08 67.4 8.4 36 206-243 14-49 (241)
184 COG1373 Predicted ATPase (AAA+ 97.2 0.0047 1E-07 68.8 14.4 119 207-350 39-163 (398)
185 PTZ00361 26 proteosome regulat 97.2 0.0013 2.9E-08 73.3 10.0 157 178-354 183-367 (438)
186 PRK06090 DNA polymerase III su 97.2 0.041 9E-07 58.8 20.7 93 283-387 107-201 (319)
187 KOG1514 Origin recognition com 97.2 0.016 3.4E-07 65.9 17.7 207 179-391 397-625 (767)
188 PRK08118 topology modulation p 97.2 0.00018 4E-09 69.6 2.4 34 207-240 3-37 (167)
189 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0032 7E-08 77.6 13.7 154 178-354 173-349 (852)
190 PTZ00454 26S protease regulato 97.2 0.0077 1.7E-07 66.8 15.3 157 178-354 145-329 (398)
191 PRK12377 putative replication 97.1 0.00095 2.1E-08 68.6 6.6 102 205-323 101-205 (248)
192 TIGR03345 VI_ClpV1 type VI sec 97.1 0.0019 4.1E-08 79.0 10.2 136 178-323 566-718 (852)
193 PRK07952 DNA replication prote 97.1 0.0024 5.3E-08 65.5 9.0 103 205-323 99-204 (244)
194 PRK06871 DNA polymerase III su 97.0 0.028 6E-07 60.3 17.2 178 186-384 10-200 (325)
195 KOG0991 Replication factor C, 97.0 0.012 2.5E-07 57.5 12.7 65 178-249 27-92 (333)
196 TIGR02640 gas_vesic_GvpN gas v 97.0 0.019 4.1E-07 60.3 15.7 110 207-324 23-161 (262)
197 PRK10865 protein disaggregatio 97.0 0.006 1.3E-07 74.9 13.6 45 178-228 178-222 (857)
198 PRK08939 primosomal protein Dn 97.0 0.0033 7.3E-08 67.1 10.0 122 182-323 135-260 (306)
199 COG5238 RNA1 Ran GTPase-activa 97.0 0.00074 1.6E-08 67.1 4.4 91 745-849 211-314 (388)
200 CHL00176 ftsH cell division pr 97.0 0.0091 2E-07 70.2 14.1 177 178-379 183-386 (638)
201 TIGR01241 FtsH_fam ATP-depende 97.0 0.018 3.8E-07 66.8 16.3 179 177-380 54-259 (495)
202 CHL00095 clpC Clp protease ATP 97.0 0.0034 7.4E-08 77.1 11.0 136 178-323 509-661 (821)
203 PRK08181 transposase; Validate 96.9 0.0028 6.1E-08 66.1 8.0 100 207-324 108-209 (269)
204 KOG4579 Leucine-rich repeat (L 96.9 0.0003 6.4E-09 62.6 0.7 88 565-664 54-141 (177)
205 PRK15386 type III secretion pr 96.9 0.00083 1.8E-08 73.0 4.1 65 587-663 48-112 (426)
206 PRK06921 hypothetical protein; 96.9 0.0042 9.2E-08 65.0 9.3 99 205-323 117-224 (266)
207 PF01695 IstB_IS21: IstB-like 96.9 0.0014 3.1E-08 64.0 5.3 102 205-324 47-150 (178)
208 KOG1644 U2-associated snRNP A' 96.9 0.0013 2.8E-08 62.9 4.6 92 782-884 57-150 (233)
209 smart00763 AAA_PrkA PrkA AAA d 96.9 0.0012 2.5E-08 70.7 4.9 51 178-228 51-101 (361)
210 COG1222 RPT1 ATP-dependent 26S 96.9 0.018 3.8E-07 60.3 13.2 186 179-391 152-371 (406)
211 PRK11034 clpA ATP-dependent Cl 96.9 0.013 2.7E-07 70.4 14.0 131 179-322 459-606 (758)
212 PRK07261 topology modulation p 96.8 0.0028 6.1E-08 61.7 7.0 66 207-295 2-68 (171)
213 PRK06964 DNA polymerase III su 96.8 0.042 9E-07 59.4 16.5 94 283-388 131-226 (342)
214 COG2607 Predicted ATPase (AAA+ 96.8 0.0076 1.6E-07 59.3 9.6 122 175-323 57-182 (287)
215 PRK07993 DNA polymerase III su 96.8 0.037 8.1E-07 60.0 16.1 179 186-386 10-203 (334)
216 PRK12608 transcription termina 96.8 0.0069 1.5E-07 65.2 10.2 103 186-295 119-231 (380)
217 PRK06526 transposase; Provisio 96.8 0.0029 6.3E-08 65.6 7.1 100 206-324 99-201 (254)
218 PRK13531 regulatory ATPase Rav 96.8 0.0062 1.3E-07 67.8 9.8 152 179-353 21-193 (498)
219 KOG0741 AAA+-type ATPase [Post 96.8 0.046 9.9E-07 60.0 15.9 149 202-377 535-704 (744)
220 PRK09183 transposase/IS protei 96.8 0.0049 1.1E-07 64.4 8.5 101 206-324 103-206 (259)
221 KOG2982 Uncharacterized conser 96.8 0.00048 1E-08 69.3 0.9 59 619-679 69-131 (418)
222 COG0470 HolB ATPase involved i 96.7 0.012 2.6E-07 64.5 11.8 142 179-340 2-167 (325)
223 PF07693 KAP_NTPase: KAP famil 96.7 0.079 1.7E-06 58.0 18.2 42 184-228 2-43 (325)
224 PHA00729 NTP-binding motif con 96.7 0.012 2.6E-07 58.9 10.4 25 204-228 16-40 (226)
225 PF02562 PhoH: PhoH-like prote 96.7 0.0024 5.2E-08 63.1 5.3 133 181-325 3-157 (205)
226 COG2812 DnaX DNA polymerase II 96.6 0.0066 1.4E-07 68.3 9.0 189 178-382 16-215 (515)
227 PRK06835 DNA replication prote 96.6 0.0029 6.4E-08 68.0 5.8 102 206-323 184-288 (329)
228 PRK04296 thymidine kinase; Pro 96.6 0.0051 1.1E-07 61.1 6.9 113 206-325 3-117 (190)
229 PRK04132 replication factor C 96.6 0.056 1.2E-06 65.1 16.7 155 213-387 574-731 (846)
230 PF14532 Sigma54_activ_2: Sigm 96.6 0.0029 6.3E-08 59.3 4.9 108 181-324 1-110 (138)
231 COG1484 DnaC DNA replication p 96.6 0.0023 5E-08 66.4 4.5 82 204-302 104-185 (254)
232 TIGR02237 recomb_radB DNA repa 96.5 0.0078 1.7E-07 61.1 8.1 49 203-254 10-58 (209)
233 PF00158 Sigma54_activat: Sigm 96.5 0.011 2.4E-07 57.1 8.6 131 180-324 1-144 (168)
234 PF10443 RNA12: RNA12 protein; 96.5 0.087 1.9E-06 57.5 16.0 203 183-398 1-289 (431)
235 PRK05541 adenylylsulfate kinas 96.5 0.0041 8.8E-08 61.2 5.6 36 204-241 6-41 (176)
236 KOG2228 Origin recognition com 96.5 0.029 6.4E-07 58.1 11.6 172 178-354 24-219 (408)
237 PF07728 AAA_5: AAA domain (dy 96.5 0.0017 3.6E-08 61.1 2.7 90 208-310 2-91 (139)
238 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.017 3.6E-07 59.9 10.3 51 204-254 18-72 (235)
239 TIGR01243 CDC48 AAA family ATP 96.5 0.024 5.3E-07 69.1 13.1 179 178-381 178-381 (733)
240 KOG1969 DNA replication checkp 96.5 0.0094 2E-07 67.8 8.5 87 203-309 324-412 (877)
241 PRK09361 radB DNA repair and r 96.4 0.013 2.7E-07 60.4 9.1 47 203-252 21-67 (225)
242 PRK11889 flhF flagellar biosyn 96.4 0.041 8.9E-07 59.5 12.5 113 204-319 240-357 (436)
243 KOG0735 AAA+-type ATPase [Post 96.4 0.064 1.4E-06 61.1 14.2 154 204-379 430-607 (952)
244 COG1223 Predicted ATPase (AAA+ 96.4 0.03 6.6E-07 55.7 10.4 156 178-354 121-297 (368)
245 TIGR02902 spore_lonB ATP-depen 96.3 0.016 3.6E-07 67.2 10.2 45 178-228 65-109 (531)
246 PF13207 AAA_17: AAA domain; P 96.3 0.0026 5.7E-08 58.1 3.0 22 207-228 1-22 (121)
247 PRK08699 DNA polymerase III su 96.3 0.061 1.3E-06 58.1 13.8 71 283-353 112-184 (325)
248 PRK15455 PrkA family serine pr 96.3 0.0031 6.7E-08 70.9 3.6 50 179-228 77-126 (644)
249 cd01120 RecA-like_NTPases RecA 96.3 0.019 4.1E-07 55.6 8.8 40 207-248 1-40 (165)
250 KOG1644 U2-associated snRNP A' 96.3 0.0041 8.8E-08 59.5 3.7 80 622-705 43-125 (233)
251 cd01393 recA_like RecA is a b 96.2 0.028 6E-07 57.9 10.0 88 204-294 18-124 (226)
252 PF08423 Rad51: Rad51; InterP 96.2 0.02 4.3E-07 59.7 8.8 57 204-261 37-97 (256)
253 PF13671 AAA_33: AAA domain; P 96.2 0.026 5.7E-07 53.2 9.0 22 207-228 1-22 (143)
254 cd01133 F1-ATPase_beta F1 ATP 96.1 0.025 5.3E-07 58.6 9.1 89 205-295 69-174 (274)
255 PRK06696 uridine kinase; Valid 96.1 0.0069 1.5E-07 62.1 5.2 44 182-228 2-45 (223)
256 PRK05800 cobU adenosylcobinami 96.1 0.012 2.5E-07 57.1 6.4 80 207-293 3-85 (170)
257 KOG0733 Nuclear AAA ATPase (VC 96.1 0.13 2.8E-06 57.8 14.8 158 178-355 190-375 (802)
258 PF13604 AAA_30: AAA domain; P 96.1 0.0065 1.4E-07 60.7 4.5 107 206-324 19-131 (196)
259 COG1875 NYN ribonuclease and A 96.1 0.02 4.3E-07 60.0 7.8 135 180-325 226-389 (436)
260 KOG1051 Chaperone HSP104 and r 96.0 0.038 8.1E-07 66.1 11.0 120 179-311 563-687 (898)
261 cd03214 ABC_Iron-Siderophores_ 96.0 0.063 1.4E-06 52.9 11.1 118 206-327 26-161 (180)
262 PF05659 RPW8: Arabidopsis bro 96.0 0.12 2.6E-06 48.2 12.1 85 1-85 1-86 (147)
263 cd01394 radB RadB. The archaea 96.0 0.019 4.2E-07 58.7 7.6 43 204-248 18-60 (218)
264 cd00983 recA RecA is a bacter 96.0 0.012 2.5E-07 62.8 5.9 85 203-294 53-143 (325)
265 CHL00195 ycf46 Ycf46; Provisio 96.0 0.054 1.2E-06 61.7 11.6 159 178-356 228-407 (489)
266 TIGR01243 CDC48 AAA family ATP 96.0 0.11 2.3E-06 63.6 15.0 179 178-381 453-657 (733)
267 KOG1532 GTPase XAB1, interacts 95.9 0.036 7.7E-07 55.6 8.5 88 202-292 16-123 (366)
268 TIGR02238 recomb_DMC1 meiotic 95.9 0.03 6.4E-07 60.1 8.8 57 204-261 95-155 (313)
269 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.058 1.3E-06 50.8 9.9 104 206-328 27-131 (144)
270 PRK13695 putative NTPase; Prov 95.9 0.0095 2.1E-07 58.4 4.6 22 207-228 2-23 (174)
271 cd03228 ABCC_MRP_Like The MRP 95.9 0.053 1.2E-06 52.9 9.9 116 206-328 29-159 (171)
272 cd00561 CobA_CobO_BtuR ATP:cor 95.9 0.033 7.2E-07 52.7 7.9 117 206-325 3-139 (159)
273 cd00544 CobU Adenosylcobinamid 95.8 0.037 8E-07 53.5 8.4 78 208-293 2-82 (169)
274 PF07724 AAA_2: AAA domain (Cd 95.8 0.0082 1.8E-07 58.2 3.8 92 204-310 2-105 (171)
275 cd03247 ABCC_cytochrome_bd The 95.8 0.074 1.6E-06 52.3 10.7 117 206-328 29-161 (178)
276 PTZ00494 tuzin-like protein; P 95.8 1.4 3E-05 48.2 20.1 170 173-354 366-544 (664)
277 PHA02244 ATPase-like protein 95.8 0.045 9.8E-07 58.8 9.4 22 207-228 121-142 (383)
278 cd03238 ABC_UvrA The excision 95.8 0.053 1.2E-06 52.8 9.2 122 205-338 21-161 (176)
279 KOG0734 AAA+-type ATPase conta 95.8 0.049 1.1E-06 59.8 9.5 54 178-231 304-363 (752)
280 TIGR03499 FlhF flagellar biosy 95.7 0.037 8E-07 58.7 8.7 87 204-293 193-281 (282)
281 PF03215 Rad17: Rad17 cell cyc 95.7 0.042 9.2E-07 62.9 9.7 59 179-242 20-78 (519)
282 PRK12724 flagellar biosynthesi 95.7 0.056 1.2E-06 59.4 10.0 25 204-228 222-246 (432)
283 PF00448 SRP54: SRP54-type pro 95.7 0.034 7.3E-07 55.3 7.7 87 205-293 1-92 (196)
284 PLN03187 meiotic recombination 95.7 0.048 1E-06 58.9 9.4 58 203-261 124-185 (344)
285 cd03216 ABC_Carb_Monos_I This 95.7 0.043 9.2E-07 53.1 8.1 115 206-327 27-145 (163)
286 TIGR02012 tigrfam_recA protein 95.7 0.033 7.2E-07 59.4 7.8 85 203-294 53-143 (321)
287 PRK08233 hypothetical protein; 95.7 0.037 8.1E-07 54.7 7.9 24 205-228 3-26 (182)
288 TIGR01817 nifA Nif-specific re 95.6 0.081 1.8E-06 62.1 11.9 134 176-323 194-340 (534)
289 KOG0730 AAA+-type ATPase [Post 95.6 0.13 2.8E-06 58.5 12.5 159 178-356 434-617 (693)
290 PF00485 PRK: Phosphoribulokin 95.6 0.047 1E-06 54.6 8.3 79 207-288 1-87 (194)
291 cd01131 PilT Pilus retraction 95.6 0.024 5.2E-07 56.7 6.2 109 206-328 2-113 (198)
292 COG2884 FtsE Predicted ATPase 95.6 0.18 3.9E-06 48.2 11.3 124 204-330 27-203 (223)
293 cd03223 ABCD_peroxisomal_ALDP 95.5 0.12 2.7E-06 50.0 10.9 116 206-328 28-152 (166)
294 COG0468 RecA RecA/RadA recombi 95.5 0.053 1.2E-06 56.4 8.6 91 202-294 57-151 (279)
295 KOG2035 Replication factor C, 95.5 0.19 4.2E-06 50.8 11.9 210 180-411 15-262 (351)
296 PRK11608 pspF phage shock prot 95.5 0.043 9.4E-07 59.6 8.3 134 179-324 7-151 (326)
297 PRK03839 putative kinase; Prov 95.5 0.02 4.4E-07 56.5 5.2 22 207-228 2-23 (180)
298 PRK05703 flhF flagellar biosyn 95.5 0.12 2.6E-06 58.1 11.9 88 205-294 221-309 (424)
299 cd03222 ABC_RNaseL_inhibitor T 95.5 0.13 2.8E-06 50.2 10.6 102 206-328 26-136 (177)
300 PRK09270 nucleoside triphospha 95.4 0.065 1.4E-06 55.1 9.0 27 202-228 30-56 (229)
301 KOG2739 Leucine-rich acidic nu 95.4 0.0049 1.1E-07 61.7 0.6 59 619-679 63-126 (260)
302 TIGR02239 recomb_RAD51 DNA rep 95.4 0.083 1.8E-06 56.9 10.0 58 203-261 94-155 (316)
303 PRK09354 recA recombinase A; P 95.4 0.05 1.1E-06 58.6 8.2 85 203-294 58-148 (349)
304 PRK05439 pantothenate kinase; 95.4 0.083 1.8E-06 56.1 9.7 95 185-285 68-166 (311)
305 PRK04301 radA DNA repair and r 95.4 0.071 1.5E-06 57.9 9.6 56 204-260 101-160 (317)
306 PRK06067 flagellar accessory p 95.4 0.065 1.4E-06 55.4 8.9 87 203-294 23-130 (234)
307 PRK00625 shikimate kinase; Pro 95.4 0.054 1.2E-06 52.6 7.7 22 207-228 2-23 (173)
308 KOG0731 AAA+-type ATPase conta 95.4 0.32 6.9E-06 57.2 15.1 181 178-383 311-520 (774)
309 PLN03186 DNA repair protein RA 95.4 0.071 1.5E-06 57.8 9.3 57 204-261 122-182 (342)
310 PRK12727 flagellar biosynthesi 95.4 0.074 1.6E-06 60.0 9.5 89 204-294 349-438 (559)
311 PRK15429 formate hydrogenlyase 95.4 0.066 1.4E-06 64.9 10.1 135 178-324 376-521 (686)
312 PRK07667 uridine kinase; Provi 95.4 0.021 4.6E-07 56.9 4.9 38 187-228 3-40 (193)
313 KOG0744 AAA+-type ATPase [Post 95.3 0.23 5E-06 51.3 12.1 80 205-294 177-260 (423)
314 COG4608 AppF ABC-type oligopep 95.3 0.081 1.8E-06 54.0 8.8 125 205-332 39-178 (268)
315 cd02025 PanK Pantothenate kina 95.3 0.061 1.3E-06 54.7 8.0 73 207-282 1-76 (220)
316 cd03115 SRP The signal recogni 95.3 0.12 2.7E-06 50.4 10.0 22 207-228 2-23 (173)
317 TIGR01650 PD_CobS cobaltochela 95.2 0.44 9.5E-06 50.8 14.4 61 179-252 46-106 (327)
318 PRK14722 flhF flagellar biosyn 95.2 0.057 1.2E-06 58.9 8.1 89 205-295 137-226 (374)
319 TIGR00554 panK_bact pantothena 95.2 0.079 1.7E-06 55.8 8.9 80 203-284 60-141 (290)
320 COG1618 Predicted nucleotide k 95.2 0.016 3.5E-07 53.4 3.2 23 206-228 6-28 (179)
321 cd03246 ABCC_Protease_Secretio 95.2 0.089 1.9E-06 51.5 8.8 118 206-328 29-160 (173)
322 cd01125 repA Hexameric Replica 95.2 0.15 3.2E-06 52.9 10.8 22 207-228 3-24 (239)
323 PLN00020 ribulose bisphosphate 95.2 0.035 7.5E-07 59.3 6.0 27 202-228 145-171 (413)
324 TIGR02974 phageshock_pspF psp 95.2 0.076 1.7E-06 57.7 8.9 45 180-228 1-45 (329)
325 KOG1947 Leucine rich repeat pr 95.2 0.0037 8E-08 72.9 -1.4 242 619-946 186-445 (482)
326 PRK14974 cell division protein 95.2 0.15 3.2E-06 55.1 10.8 114 204-321 139-261 (336)
327 PF00560 LRR_1: Leucine Rich R 95.2 0.009 2E-07 35.5 1.0 19 623-642 2-20 (22)
328 KOG0733 Nuclear AAA ATPase (VC 95.1 0.26 5.6E-06 55.5 12.5 155 204-380 544-717 (802)
329 PRK00771 signal recognition pa 95.1 0.17 3.7E-06 56.7 11.6 56 204-262 94-151 (437)
330 PF08298 AAA_PrkA: PrkA AAA do 95.1 0.03 6.4E-07 59.5 5.2 52 177-228 60-111 (358)
331 PTZ00301 uridine kinase; Provi 95.1 0.023 5E-07 57.0 4.3 25 204-228 2-26 (210)
332 TIGR00390 hslU ATP-dependent p 95.1 0.066 1.4E-06 58.5 7.9 81 178-260 12-104 (441)
333 KOG0924 mRNA splicing factor A 95.0 0.23 5.1E-06 56.1 12.0 130 206-340 372-529 (1042)
334 KOG2123 Uncharacterized conser 95.0 0.0025 5.5E-08 63.7 -2.7 36 619-656 39-74 (388)
335 COG0542 clpA ATP-binding subun 95.0 0.1 2.2E-06 61.7 9.7 155 178-353 170-345 (786)
336 KOG2123 Uncharacterized conser 95.0 0.0021 4.5E-08 64.3 -3.3 100 562-675 17-123 (388)
337 COG1136 SalX ABC-type antimicr 95.0 0.25 5.5E-06 49.6 11.2 66 271-338 147-215 (226)
338 cd01122 GP4d_helicase GP4d_hel 95.0 0.21 4.6E-06 53.0 11.6 54 205-261 30-83 (271)
339 PF01583 APS_kinase: Adenylyls 95.0 0.028 6E-07 53.0 4.1 36 205-242 2-37 (156)
340 TIGR00959 ffh signal recogniti 94.9 0.15 3.3E-06 57.0 10.5 25 204-228 98-122 (428)
341 PTZ00035 Rad51 protein; Provis 94.9 0.16 3.4E-06 55.2 10.5 58 203-261 116-177 (337)
342 PRK12723 flagellar biosynthesi 94.9 0.18 3.9E-06 55.6 10.9 104 204-310 173-282 (388)
343 PF13238 AAA_18: AAA domain; P 94.9 0.019 4.1E-07 52.9 2.9 21 208-228 1-21 (129)
344 cd03230 ABC_DR_subfamily_A Thi 94.9 0.1 2.2E-06 51.0 8.2 117 206-328 27-159 (173)
345 cd03281 ABC_MSH5_euk MutS5 hom 94.9 0.055 1.2E-06 54.8 6.3 121 205-330 29-160 (213)
346 PF00154 RecA: recA bacterial 94.9 0.047 1E-06 58.1 6.0 84 204-294 52-141 (322)
347 PRK08533 flagellar accessory p 94.9 0.17 3.6E-06 52.0 9.9 48 205-256 24-71 (230)
348 PRK10867 signal recognition pa 94.9 0.11 2.4E-06 58.0 9.2 25 204-228 99-123 (433)
349 COG1102 Cmk Cytidylate kinase 94.8 0.052 1.1E-06 50.2 5.3 44 207-263 2-45 (179)
350 COG0572 Udk Uridine kinase [Nu 94.8 0.052 1.1E-06 53.8 5.7 77 204-285 7-85 (218)
351 cd01124 KaiC KaiC is a circadi 94.8 0.17 3.6E-06 50.3 9.7 45 207-255 1-45 (187)
352 PRK05022 anaerobic nitric oxid 94.8 0.098 2.1E-06 60.8 9.1 134 177-324 186-332 (509)
353 TIGR00708 cobA cob(I)alamin ad 94.8 0.16 3.5E-06 48.7 8.9 118 206-324 6-140 (173)
354 cd03282 ABC_MSH4_euk MutS4 hom 94.8 0.057 1.2E-06 54.1 6.2 119 205-332 29-159 (204)
355 COG0464 SpoVK ATPases of the A 94.8 0.33 7.2E-06 56.5 13.3 133 203-355 274-424 (494)
356 PRK05201 hslU ATP-dependent pr 94.8 0.073 1.6E-06 58.3 7.2 81 178-260 15-107 (443)
357 COG0563 Adk Adenylate kinase a 94.8 0.085 1.8E-06 51.4 7.0 22 207-228 2-23 (178)
358 PRK05480 uridine/cytidine kina 94.8 0.025 5.5E-07 57.3 3.6 25 204-228 5-29 (209)
359 COG1121 ZnuC ABC-type Mn/Zn tr 94.7 0.19 4.1E-06 51.3 9.6 119 206-326 31-201 (254)
360 cd02019 NK Nucleoside/nucleoti 94.7 0.022 4.8E-07 45.7 2.4 22 207-228 1-22 (69)
361 PTZ00088 adenylate kinase 1; P 94.7 0.034 7.5E-07 56.6 4.4 22 207-228 8-29 (229)
362 PRK12726 flagellar biosynthesi 94.7 0.28 6E-06 53.2 11.1 91 203-295 204-296 (407)
363 PRK07132 DNA polymerase III su 94.7 0.77 1.7E-05 48.9 14.5 157 204-386 17-184 (299)
364 TIGR02236 recomb_radA DNA repa 94.6 0.14 3.1E-06 55.4 9.3 56 204-260 94-153 (310)
365 PRK06547 hypothetical protein; 94.6 0.044 9.5E-07 53.2 4.7 26 203-228 13-38 (172)
366 PF12775 AAA_7: P-loop contain 94.6 0.022 4.8E-07 59.9 2.9 96 187-302 22-118 (272)
367 PRK10733 hflB ATP-dependent me 94.6 0.23 5.1E-06 59.3 11.6 156 179-354 153-335 (644)
368 TIGR00235 udk uridine kinase. 94.6 0.027 6E-07 56.9 3.3 25 204-228 5-29 (207)
369 cd03229 ABC_Class3 This class 94.6 0.13 2.8E-06 50.5 8.0 23 206-228 27-49 (178)
370 cd00267 ABC_ATPase ABC (ATP-bi 94.5 0.11 2.4E-06 49.9 7.3 116 206-329 26-145 (157)
371 PRK13539 cytochrome c biogenes 94.5 0.2 4.3E-06 50.7 9.4 24 205-228 28-51 (207)
372 TIGR01069 mutS2 MutS2 family p 94.5 0.053 1.2E-06 65.6 6.0 25 204-228 321-345 (771)
373 PF12061 DUF3542: Protein of u 94.5 0.086 1.9E-06 53.8 6.4 76 10-85 297-373 (402)
374 TIGR00064 ftsY signal recognit 94.5 0.17 3.8E-06 53.2 9.2 89 204-295 71-165 (272)
375 PF07726 AAA_3: ATPase family 94.5 0.034 7.3E-07 49.9 3.1 27 208-236 2-28 (131)
376 COG2842 Uncharacterized ATPase 94.5 0.88 1.9E-05 47.1 13.7 123 177-312 71-193 (297)
377 PRK06762 hypothetical protein; 94.4 0.03 6.4E-07 54.4 3.1 24 205-228 2-25 (166)
378 COG0396 sufC Cysteine desulfur 94.4 0.54 1.2E-05 46.6 11.4 68 271-338 149-218 (251)
379 cd03369 ABCC_NFT1 Domain 2 of 94.4 0.55 1.2E-05 47.4 12.4 23 206-228 35-57 (207)
380 cd03217 ABC_FeS_Assembly ABC-t 94.3 0.23 4.9E-06 49.9 9.3 24 205-228 26-49 (200)
381 PRK00889 adenylylsulfate kinas 94.3 0.084 1.8E-06 51.8 6.1 25 204-228 3-27 (175)
382 cd02028 UMPK_like Uridine mono 94.3 0.075 1.6E-06 52.2 5.6 22 207-228 1-22 (179)
383 cd02027 APSK Adenosine 5'-phos 94.3 0.089 1.9E-06 49.9 5.9 22 207-228 1-22 (149)
384 PF00560 LRR_1: Leucine Rich R 94.2 0.022 4.8E-07 33.8 1.0 21 646-667 1-21 (22)
385 TIGR00150 HI0065_YjeE ATPase, 94.2 0.07 1.5E-06 48.8 4.7 41 185-229 6-46 (133)
386 PF08433 KTI12: Chromatin asso 94.2 0.09 2E-06 55.0 6.2 23 206-228 2-24 (270)
387 cd03215 ABC_Carb_Monos_II This 94.2 0.39 8.5E-06 47.3 10.5 23 206-228 27-49 (182)
388 PRK06217 hypothetical protein; 94.2 0.14 3.1E-06 50.6 7.3 23 207-229 3-25 (183)
389 PF00910 RNA_helicase: RNA hel 94.2 0.027 5.9E-07 49.9 2.0 21 208-228 1-21 (107)
390 KOG3347 Predicted nucleotide k 94.1 0.069 1.5E-06 48.6 4.4 69 205-283 7-75 (176)
391 cd03283 ABC_MutS-like MutS-lik 94.1 0.28 6E-06 49.1 9.3 23 206-228 26-48 (199)
392 PF00006 ATP-synt_ab: ATP synt 94.1 0.12 2.6E-06 52.0 6.6 85 206-294 16-115 (215)
393 PF03308 ArgK: ArgK protein; 94.1 0.11 2.3E-06 52.8 6.1 65 186-254 14-78 (266)
394 PF06309 Torsin: Torsin; Inte 94.0 0.094 2E-06 47.0 5.0 50 179-228 26-76 (127)
395 TIGR03877 thermo_KaiC_1 KaiC d 94.0 0.32 6.9E-06 50.3 9.8 49 204-256 20-68 (237)
396 PRK04040 adenylate kinase; Pro 94.0 0.045 9.8E-07 54.1 3.3 24 205-228 2-25 (188)
397 cd03213 ABCG_EPDR ABCG transpo 94.0 0.45 9.7E-06 47.5 10.5 24 205-228 35-58 (194)
398 PRK08972 fliI flagellum-specif 94.0 0.18 4E-06 55.8 8.2 87 205-295 162-263 (444)
399 COG4618 ArpD ABC-type protease 94.0 0.23 4.9E-06 54.9 8.7 22 206-227 363-384 (580)
400 PRK10875 recD exonuclease V su 93.9 0.23 5.1E-06 58.3 9.6 115 205-324 167-302 (615)
401 KOG2739 Leucine-rich acidic nu 93.9 0.019 4.1E-07 57.6 0.5 82 619-704 41-127 (260)
402 TIGR02858 spore_III_AA stage I 93.9 0.36 7.8E-06 50.5 9.9 125 186-328 97-233 (270)
403 cd03233 ABC_PDR_domain1 The pl 93.9 0.7 1.5E-05 46.4 11.8 24 205-228 33-56 (202)
404 cd03253 ABCC_ATM1_transporter 93.8 0.48 1E-05 49.0 11.0 23 206-228 28-50 (236)
405 cd03244 ABCC_MRP_domain2 Domai 93.8 0.56 1.2E-05 47.9 11.3 23 206-228 31-53 (221)
406 TIGR01360 aden_kin_iso1 adenyl 93.8 0.05 1.1E-06 54.1 3.4 25 204-228 2-26 (188)
407 PRK06002 fliI flagellum-specif 93.8 0.28 6.1E-06 54.6 9.4 88 205-295 165-265 (450)
408 cd03232 ABC_PDR_domain2 The pl 93.8 0.37 8.1E-06 48.0 9.6 24 205-228 33-56 (192)
409 COG2019 AdkA Archaeal adenylat 93.7 0.058 1.3E-06 50.2 3.2 24 205-228 4-27 (189)
410 cd01121 Sms Sms (bacterial rad 93.7 0.27 5.9E-06 54.1 9.1 40 204-245 81-120 (372)
411 PF03969 AFG1_ATPase: AFG1-lik 93.7 0.26 5.6E-06 54.0 8.9 77 203-297 60-140 (362)
412 COG4088 Predicted nucleotide k 93.7 0.2 4.3E-06 48.4 6.7 22 207-228 3-24 (261)
413 PRK10820 DNA-binding transcrip 93.7 0.17 3.8E-06 58.8 7.9 133 178-324 204-349 (520)
414 COG1428 Deoxynucleoside kinase 93.7 0.049 1.1E-06 53.1 2.8 24 205-228 4-27 (216)
415 PRK14723 flhF flagellar biosyn 93.6 0.45 9.7E-06 56.7 11.1 87 205-294 185-273 (767)
416 PRK14721 flhF flagellar biosyn 93.6 0.32 7E-06 54.1 9.4 25 204-228 190-214 (420)
417 PRK10463 hydrogenase nickel in 93.6 0.29 6.3E-06 51.3 8.5 87 203-295 102-195 (290)
418 COG5635 Predicted NTPase (NACH 93.6 0.13 2.9E-06 63.5 7.1 197 204-406 221-446 (824)
419 cd01135 V_A-ATPase_B V/A-type 93.5 0.2 4.4E-06 51.8 7.2 90 206-295 70-177 (276)
420 PRK09580 sufC cysteine desulfu 93.5 0.78 1.7E-05 47.9 11.9 23 206-228 28-50 (248)
421 COG1703 ArgK Putative periplas 93.5 0.11 2.3E-06 53.5 5.0 67 187-257 37-103 (323)
422 PRK05986 cob(I)alamin adenolsy 93.5 0.27 5.9E-06 47.9 7.5 120 204-324 21-158 (191)
423 PF13481 AAA_25: AAA domain; P 93.5 0.3 6.6E-06 48.7 8.4 40 207-246 34-81 (193)
424 TIGR01420 pilT_fam pilus retra 93.4 0.22 4.9E-06 54.6 7.8 111 206-327 123-233 (343)
425 PF03205 MobB: Molybdopterin g 93.4 0.098 2.1E-06 48.8 4.3 39 206-245 1-39 (140)
426 PRK10751 molybdopterin-guanine 93.4 0.08 1.7E-06 51.0 3.8 25 204-228 5-29 (173)
427 TIGR03878 thermo_KaiC_2 KaiC d 93.4 0.23 5.1E-06 52.0 7.6 40 204-245 35-74 (259)
428 PRK07594 type III secretion sy 93.4 0.27 5.8E-06 54.8 8.3 87 205-295 155-256 (433)
429 PRK09280 F0F1 ATP synthase sub 93.4 0.3 6.4E-06 54.7 8.6 90 205-295 144-249 (463)
430 COG0467 RAD55 RecA-superfamily 93.3 0.15 3.2E-06 53.7 6.1 51 203-257 21-71 (260)
431 PRK12597 F0F1 ATP synthase sub 93.3 0.28 6.2E-06 55.1 8.5 90 205-295 143-248 (461)
432 PRK08149 ATP synthase SpaL; Va 93.3 0.31 6.8E-06 54.1 8.7 87 205-295 151-252 (428)
433 KOG1947 Leucine rich repeat pr 93.3 0.0097 2.1E-07 69.4 -3.2 135 788-936 187-329 (482)
434 cd02024 NRK1 Nicotinamide ribo 93.3 0.051 1.1E-06 53.3 2.3 22 207-228 1-22 (187)
435 TIGR01359 UMP_CMP_kin_fam UMP- 93.3 0.049 1.1E-06 53.9 2.2 22 207-228 1-22 (183)
436 TIGR01447 recD exodeoxyribonuc 93.3 0.32 6.9E-06 57.0 9.2 114 206-324 161-296 (586)
437 TIGR01818 ntrC nitrogen regula 93.2 0.43 9.4E-06 55.2 10.4 134 179-324 135-279 (463)
438 PRK06995 flhF flagellar biosyn 93.2 0.52 1.1E-05 53.3 10.4 88 205-294 256-344 (484)
439 cd02023 UMPK Uridine monophosp 93.2 0.053 1.1E-06 54.5 2.4 22 207-228 1-22 (198)
440 TIGR02322 phosphon_PhnN phosph 93.2 0.064 1.4E-06 52.8 2.9 23 206-228 2-24 (179)
441 PRK15453 phosphoribulokinase; 93.2 0.42 9.2E-06 49.6 8.8 76 204-282 4-88 (290)
442 PRK06731 flhF flagellar biosyn 93.2 0.57 1.2E-05 49.0 10.0 88 205-295 75-165 (270)
443 PRK00131 aroK shikimate kinase 93.2 0.068 1.5E-06 52.4 3.1 24 205-228 4-27 (175)
444 PRK08927 fliI flagellum-specif 93.2 0.42 9.1E-06 53.3 9.4 88 204-295 157-259 (442)
445 PRK15115 response regulator Gl 93.1 0.96 2.1E-05 52.0 13.0 133 179-324 135-279 (444)
446 PRK00279 adk adenylate kinase; 93.1 0.23 5.1E-06 50.5 7.0 22 207-228 2-23 (215)
447 KOG0473 Leucine-rich repeat pr 93.1 0.0052 1.1E-07 59.9 -4.7 85 587-680 38-122 (326)
448 TIGR03575 selen_PSTK_euk L-ser 93.1 0.22 4.8E-06 53.7 6.9 21 208-228 2-22 (340)
449 COG2401 ABC-type ATPase fused 93.0 0.15 3.2E-06 54.5 5.3 157 179-336 372-580 (593)
450 PF10236 DAP3: Mitochondrial r 93.0 0.71 1.5E-05 49.7 10.7 48 335-383 258-305 (309)
451 PF01078 Mg_chelatase: Magnesi 93.0 0.17 3.6E-06 50.0 5.3 42 178-227 3-44 (206)
452 PRK03846 adenylylsulfate kinas 92.9 0.09 2E-06 52.7 3.6 26 203-228 22-47 (198)
453 COG1936 Predicted nucleotide k 92.9 0.075 1.6E-06 50.0 2.7 20 207-226 2-21 (180)
454 COG1066 Sms Predicted ATP-depe 92.9 0.44 9.6E-06 51.4 8.7 82 205-295 93-179 (456)
455 cd02021 GntK Gluconate kinase 92.9 0.066 1.4E-06 50.9 2.5 22 207-228 1-22 (150)
456 smart00534 MUTSac ATPase domai 92.9 0.7 1.5E-05 45.6 9.8 21 207-227 1-21 (185)
457 cd03245 ABCC_bacteriocin_expor 92.9 1 2.3E-05 45.9 11.5 24 205-228 30-53 (220)
458 TIGR02329 propionate_PrpR prop 92.9 0.26 5.7E-06 56.9 7.6 47 178-228 212-258 (526)
459 PRK09519 recA DNA recombinatio 92.9 0.28 6E-06 58.6 7.9 85 203-294 58-148 (790)
460 TIGR03881 KaiC_arch_4 KaiC dom 92.9 0.49 1.1E-05 48.7 9.1 40 204-245 19-58 (229)
461 PLN02348 phosphoribulokinase 92.8 0.47 1E-05 51.7 9.0 26 203-228 47-72 (395)
462 PRK13948 shikimate kinase; Pro 92.8 0.088 1.9E-06 51.5 3.2 25 204-228 9-33 (182)
463 cd00227 CPT Chloramphenicol (C 92.8 0.074 1.6E-06 52.1 2.7 23 206-228 3-25 (175)
464 PRK05922 type III secretion sy 92.8 0.51 1.1E-05 52.5 9.4 86 206-295 158-258 (434)
465 PRK00409 recombination and DNA 92.8 0.13 2.8E-06 62.5 5.3 177 204-394 326-513 (782)
466 PF00625 Guanylate_kin: Guanyl 92.8 0.11 2.3E-06 51.4 3.9 36 205-242 2-37 (183)
467 KOG0727 26S proteasome regulat 92.8 0.19 4E-06 49.8 5.3 55 179-235 156-217 (408)
468 PRK07276 DNA polymerase III su 92.8 3.2 6.8E-05 43.9 14.9 69 283-352 103-173 (290)
469 cd03254 ABCC_Glucan_exporter_l 92.8 1.1 2.4E-05 46.1 11.6 23 206-228 30-52 (229)
470 PRK14528 adenylate kinase; Pro 92.8 0.28 6E-06 48.5 6.8 23 206-228 2-24 (186)
471 PRK13949 shikimate kinase; Pro 92.8 0.077 1.7E-06 51.5 2.7 22 207-228 3-24 (169)
472 cd03250 ABCC_MRP_domain1 Domai 92.7 1.6 3.4E-05 44.0 12.3 24 205-228 31-54 (204)
473 TIGR00764 lon_rel lon-related 92.7 0.27 5.9E-06 58.0 7.6 74 178-262 18-92 (608)
474 TIGR03498 FliI_clade3 flagella 92.7 0.39 8.5E-06 53.4 8.4 87 205-295 140-241 (418)
475 PRK13947 shikimate kinase; Pro 92.7 0.077 1.7E-06 51.8 2.7 22 207-228 3-24 (171)
476 COG1643 HrpA HrpA-like helicas 92.7 0.85 1.8E-05 55.1 11.7 144 184-338 52-222 (845)
477 TIGR01425 SRP54_euk signal rec 92.7 0.45 9.8E-06 52.9 8.8 25 204-228 99-123 (429)
478 PRK06936 type III secretion sy 92.6 0.44 9.4E-06 53.1 8.6 87 205-295 162-263 (439)
479 PRK04328 hypothetical protein; 92.6 0.32 6.9E-06 50.7 7.2 47 204-254 22-68 (249)
480 PF13479 AAA_24: AAA domain 92.6 0.37 7.9E-06 48.9 7.5 20 206-225 4-23 (213)
481 COG4240 Predicted kinase [Gene 92.6 0.4 8.6E-06 47.1 7.1 83 203-286 48-135 (300)
482 TIGR03263 guanyl_kin guanylate 92.6 0.089 1.9E-06 51.9 3.0 23 206-228 2-24 (180)
483 COG0529 CysC Adenylylsulfate k 92.6 0.12 2.5E-06 48.8 3.4 26 203-228 21-46 (197)
484 COG0714 MoxR-like ATPases [Gen 92.5 0.24 5.2E-06 54.2 6.5 109 179-310 25-138 (329)
485 PF08477 Miro: Miro-like prote 92.5 0.095 2.1E-06 47.4 2.9 22 208-229 2-23 (119)
486 PRK11388 DNA-binding transcrip 92.5 0.38 8.2E-06 58.0 8.8 131 178-323 325-466 (638)
487 TIGR03305 alt_F1F0_F1_bet alte 92.5 0.34 7.4E-06 54.1 7.6 90 205-295 138-243 (449)
488 PF03193 DUF258: Protein of un 92.5 0.17 3.7E-06 47.9 4.5 35 185-228 24-58 (161)
489 PF03266 NTPase_1: NTPase; In 92.5 0.087 1.9E-06 50.9 2.6 21 208-228 2-22 (168)
490 PTZ00185 ATPase alpha subunit; 92.5 0.66 1.4E-05 52.1 9.6 91 205-295 189-300 (574)
491 TIGR01040 V-ATPase_V1_B V-type 92.5 0.43 9.4E-06 53.0 8.2 90 206-295 142-258 (466)
492 cd01136 ATPase_flagellum-secre 92.5 0.64 1.4E-05 49.9 9.3 86 206-295 70-170 (326)
493 COG2274 SunT ABC-type bacterio 92.4 1.4 3E-05 52.9 13.0 23 205-227 499-521 (709)
494 PRK12339 2-phosphoglycerate ki 92.4 0.11 2.3E-06 51.7 3.2 24 205-228 3-26 (197)
495 PRK10923 glnG nitrogen regulat 92.4 0.41 8.8E-06 55.5 8.6 47 178-228 138-184 (469)
496 COG1124 DppF ABC-type dipeptid 92.4 0.1 2.2E-06 52.1 3.0 23 206-228 34-56 (252)
497 COG1131 CcmA ABC-type multidru 92.4 0.99 2.1E-05 48.2 10.8 24 205-228 31-54 (293)
498 TIGR03522 GldA_ABC_ATP gliding 92.4 0.55 1.2E-05 50.6 8.9 24 205-228 28-51 (301)
499 COG0194 Gmk Guanylate kinase [ 92.4 0.14 3E-06 49.0 3.7 24 205-228 4-27 (191)
500 PRK14737 gmk guanylate kinase; 92.3 0.12 2.7E-06 50.9 3.6 25 204-228 3-27 (186)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-91 Score=823.48 Aligned_cols=837 Identities=26% Similarity=0.382 Sum_probs=616.4
Q ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhhhc
Q 002115 15 TAMAAAETKEQVKLVTGVGKEVKKLNSNLRAIQAVLHDAEKRQVKEETVRLWLDQLRDACYDIEDVLGEWNTARLKLQID 94 (965)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~yd~ed~ld~~~~~~~~~~~~ 94 (965)
++++.+.+.+++....+.++.+..|+++|..++++++||+.++.....+..|...+++++|++||.++.|.......+..
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~ 88 (889)
T KOG4658|consen 9 VEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKAN 88 (889)
T ss_pred hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56667778888889999999999999999999999999999988888999999999999999999999999888765432
Q ss_pred cCCCCCCCcCCccccccccccCCCcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcCceecccccC--cccCCCCCCc
Q 002115 95 GVDDHENDALDPNKKVCSFFPTTSCFGCKPIVLRRDIALKIKEINETLDDIAKQKDMFGFAVNVIKSN--ERTDQRVPSI 172 (965)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 172 (965)
+ ....+....+. .|+| .+++..+..+..+..++..+.+....++......... ......+++.
T Consensus 89 ~-------~l~~~~~~~~~----~c~~----~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~ 153 (889)
T KOG4658|consen 89 D-------LLSTRSVERQR----LCLC----GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETR 153 (889)
T ss_pred H-------HhhhhHHHHHH----Hhhh----hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccC
Confidence 2 01000001111 1111 4566777777777777777777777666433211111 1111223344
Q ss_pred CCCCCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccc-ccccccceEEEEcCCCCCHHH
Q 002115 173 SSIDESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDG-VKRNFEKRIWVCVSEPFDEFR 251 (965)
Q Consensus 173 ~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~ 251 (965)
+...... ||.+..++++++.|..++ ..+++|+||||+||||||+.++|+.. ++.+||.++||+||+.++...
T Consensus 154 ~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~ 226 (889)
T KOG4658|consen 154 PIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRK 226 (889)
T ss_pred CCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHh
Confidence 4444445 999999999999998653 27999999999999999999999987 999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCC--CHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchHHHhh
Q 002115 252 IARAIIESLTGSASNFG--EFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEIVARC 329 (965)
Q Consensus 252 ~~~~i~~~l~~~~~~~~--~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 329 (965)
++.+|++.++....... ..+++...+.+.|++|||+|||||||++ .+|+.+..++|...+||||++|||+..|+..
T Consensus 227 iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~ 304 (889)
T KOG4658|consen 227 IQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGR 304 (889)
T ss_pred HHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhc
Confidence 99999999987544333 3478999999999999999999999996 4699999999999999999999999999998
Q ss_pred -cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhhcCCCCHHHHHHHHhhhh
Q 002115 330 -MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLLQSRNTEKEWQNILESEI 408 (965)
Q Consensus 330 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~~~ 408 (965)
+++...+++..|+++|||.||++.||.... ..++.++++|++|+++|+|+|||++++|+.|+.+.+..+|.++.+...
T Consensus 305 ~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~ 383 (889)
T KOG4658|consen 305 AMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLK 383 (889)
T ss_pred cccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccc
Confidence 888899999999999999999999987643 344559999999999999999999999999999999999999998765
Q ss_pred hh----hhhhhhhhhhHHHHhhcCCcHhHHHHHhHhcccCCCceecHHHHHHHHHhCCcccc-CCCCcHHHHHHHHHHHH
Q 002115 409 WE----LEEVERGLLAPLLLSYNELPSKIKQCFTYCAIFPKDYQIQKKELINLWMAQGYLSK-KGTKEMEDIGEEYFNIL 483 (965)
Q Consensus 409 ~~----~~~~~~~i~~~l~~sy~~L~~~lk~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~-~~~~~~e~~~~~~l~~L 483 (965)
+. .+++.+.++++|.+||++||+++|.||+|||+||+||.|+++.||.+|+|||||.+ ..+.+++++|..|+.+|
T Consensus 384 s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~L 463 (889)
T KOG4658|consen 384 SSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEEL 463 (889)
T ss_pred ccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHH
Confidence 54 23345789999999999999999999999999999999999999999999999988 44688999999999999
Q ss_pred HhCCCccccccCCCCCeeEEEeChhHHHHHHHhhc-----cceeEeecC-CCccccccccCcceEEEEEEEeCCCccchh
Q 002115 484 ASRSFFQDFRRYGLGENYVCKMHDIVHDFAQFLCR-----NECFALQIH-GGENSFMRSFGEKKVLHLMLNLDGRHLVSI 557 (965)
Q Consensus 484 ~~~sl~~~~~~~~~~~~~~~~~Hdlv~~~a~~~~~-----~e~~~~~~~-~~~~~~~~~~~~~~~r~L~l~~~~~~~~~~ 557 (965)
++++|++..+.. ++..+|+|||+||++|.++++ +++.+.... +....+....+ ..+|++++.++.+...+.
T Consensus 464 V~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~-~~~rr~s~~~~~~~~~~~ 540 (889)
T KOG4658|consen 464 VRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSW-NSVRRMSLMNNKIEHIAG 540 (889)
T ss_pred HHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccch-hheeEEEEeccchhhccC
Confidence 999999986654 566789999999999999999 666555443 33333322222 689999999998764443
Q ss_pred hHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCcccc
Q 002115 558 SIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKL 637 (965)
Q Consensus 558 ~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~l 637 (965)
.. .+++|++|.+.++.. +...+.+.+|..++.||+|||++ +..+..+|+.|++|.|||||+|+++. +..+
T Consensus 541 ~~--~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~------~~~l~~LP~~I~~Li~LryL~L~~t~-I~~L 610 (889)
T KOG4658|consen 541 SS--ENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSG------NSSLSKLPSSIGELVHLRYLDLSDTG-ISHL 610 (889)
T ss_pred CC--CCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCC------CCccCcCChHHhhhhhhhcccccCCC-cccc
Confidence 32 667899999999863 34555667799999999999996 33457899999999999999999999 9999
Q ss_pred chhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccc
Q 002115 638 PETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLK 717 (965)
Q Consensus 638 p~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 717 (965)
|..+++|+.|++||+..+..+..+|..+..|.+||+|.+.... ...-...++.+.+|++|......... ...+..+.
T Consensus 611 P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s--~~~~e~l~ 687 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISS--VLLLEDLL 687 (889)
T ss_pred chHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecch--hHhHhhhh
Confidence 9999999999999999998777776666779999999987652 11111224445555555544443332 11122233
Q ss_pred cCCcCCcceeecc-CCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCC-CCCCCceEE
Q 002115 718 KLNLLRYCRIHGL-GDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALG-PPPNLKELR 795 (965)
Q Consensus 718 ~L~~L~~l~~~~~-~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~ 795 (965)
.+..|..+..... .. .......+.+..+.+|++|.+..+...........+ .... .++++.++.
T Consensus 688 ~~~~L~~~~~~l~~~~--~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~------------~~~~~~f~~l~~~~ 753 (889)
T KOG4658|consen 688 GMTRLRSLLQSLSIEG--CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEES------------LIVLLCFPNLSKVS 753 (889)
T ss_pred hhHHHHHHhHhhhhcc--cccceeecccccccCcceEEEEcCCCchhhcccccc------------cchhhhHHHHHHHH
Confidence 3333331111111 00 111223356778889999999888543211100000 0000 245677777
Q ss_pred EeeecCCCCCCChhhHhhccCCcEEEEecCCCCCC-CCCCCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCc
Q 002115 796 IYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEH-LPPLGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFP 874 (965)
Q Consensus 796 L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~-lp~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 874 (965)
+.++.... .+ .|....++|+.|.+..|...+. +|....+..++.+.+..+. ..... ... ...+||
T Consensus 754 ~~~~~~~r--~l-~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~-~~~l~-~~~---------~l~~l~ 819 (889)
T KOG4658|consen 754 ILNCHMLR--DL-TWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNK-LEGLR-MLC---------SLGGLP 819 (889)
T ss_pred hhcccccc--cc-chhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccc-cccce-eee---------cCCCCc
Confidence 77777666 55 6777889999999999976654 4446666666654443211 11000 000 012455
Q ss_pred ccccccccccccccccCcccccccccccCcccceEeeccC-ccCcCCCcC
Q 002115 875 KLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRC-PKLKALPDR 923 (965)
Q Consensus 875 ~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c-~~l~~lp~~ 923 (965)
++..+.+.... |+.|.+... +....+|.+..+.+.+| .++...|.+
T Consensus 820 ~i~~~~l~~~~-l~~~~ve~~--p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 820 QLYWLPLSFLK-LEELIVEEC--PKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred eeEecccCccc-hhheehhcC--cccccCccccccceeccccceeecCCc
Confidence 55555544332 444443331 22335666666666665 445555543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.1e-64 Score=630.56 Aligned_cols=683 Identities=21% Similarity=0.292 Sum_probs=447.2
Q ss_pred CCCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEc---CCC-----
Q 002115 175 IDESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCV---SEP----- 246 (965)
Q Consensus 175 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~----- 246 (965)
.+.+++|||++.++++..+|... ..+.++|+||||||+||||||+++|+. +..+|+..+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~~--l~~~F~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFSR--LSRQFQSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHHH--HhhcCCeEEEeeccccccchhhcc
Confidence 34567999999999999988543 236899999999999999999999987 7789998888742 111
Q ss_pred ------CC-HHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEE
Q 002115 247 ------FD-EFRIARAIIESLTGSAS-NFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKIL 318 (965)
Q Consensus 247 ------~~-~~~~~~~i~~~l~~~~~-~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 318 (965)
++ ...+++.++.++..... .... ...+++.+++||+||||||||+. ..|+.+.......++||+||
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEE
Confidence 01 12344455555433211 1111 14567788999999999999974 57888877666667899999
Q ss_pred EeecchHHHhhcCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhhcCCCCHH
Q 002115 319 ITTRKEIVARCMRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLLQSRNTEK 398 (965)
Q Consensus 319 vTtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~ 398 (965)
||||+..++..++...+|+++.|++++||+||+.+||+... .++.+++++++|+++|+|+|||++++|+.|+.+ +.+
T Consensus 329 iTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~ 405 (1153)
T PLN03210 329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKE 405 (1153)
T ss_pred EEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHH
Confidence 99999999987777889999999999999999999997643 345688999999999999999999999999986 688
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhHHHHhhcCCcH-hHHHHHhHhcccCCCceecHHHHHHHHHhCCccccCCCCcHHHHHH
Q 002115 399 EWQNILESEIWELEEVERGLLAPLLLSYNELPS-KIKQCFTYCAIFPKDYQIQKKELINLWMAQGYLSKKGTKEMEDIGE 477 (965)
Q Consensus 399 ~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~-~lk~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~ 477 (965)
+|..+++...... ...+.++|++||++|++ ..|.||+++|+||.+..++ .+..|++.+.... +
T Consensus 406 ~W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~ 469 (1153)
T PLN03210 406 DWMDMLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------N 469 (1153)
T ss_pred HHHHHHHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------h
Confidence 9999998765432 34699999999999987 5999999999999986553 4677888765432 2
Q ss_pred HHHHHHHhCCCccccccCCCCCeeEEEeChhHHHHHHHhhccce-------eEeecCCCccccccccCcceEEEEEEEeC
Q 002115 478 EYFNILASRSFFQDFRRYGLGENYVCKMHDIVHDFAQFLCRNEC-------FALQIHGGENSFMRSFGEKKVLHLMLNLD 550 (965)
Q Consensus 478 ~~l~~L~~~sl~~~~~~~~~~~~~~~~~Hdlv~~~a~~~~~~e~-------~~~~~~~~~~~~~~~~~~~~~r~L~l~~~ 550 (965)
.-++.|+++||++... ..++|||++|++|+.+++++. +...............+...++.+++..+
T Consensus 470 ~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~ 542 (1153)
T PLN03210 470 IGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDID 542 (1153)
T ss_pred hChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccC
Confidence 2388999999998632 248999999999999987653 22211111111112233367888888766
Q ss_pred CCcc--chhhHhhhcCceeEEEeccccc---ccccccchHHhhcCC-ccceEEcCccccc---------------ccccc
Q 002115 551 GRHL--VSISIWDHVKRLRSLLVESYEY---SWSSEVLPQLFDKLT-CLRALTLGVHSLR---------------LCENC 609 (965)
Q Consensus 551 ~~~~--~~~~~~~~~~~Lr~L~l~~~~~---~~~~~~l~~~~~~l~-~Lr~L~L~~n~l~---------------~~~~~ 609 (965)
.... +....|..+++|+.|.+..... ......+|..|..++ .||.|.+.++.+. +.++.
T Consensus 543 ~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~ 622 (1153)
T PLN03210 543 EIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSK 622 (1153)
T ss_pred ccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcc
Confidence 5432 4556677899999888865421 011112343344332 3555555522110 00333
Q ss_pred hhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccC
Q 002115 610 IKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGI 689 (965)
Q Consensus 610 i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i 689 (965)
+..+|..+..+++|++|+|++|..++.+|. ++.+++|++|++++|..+..+|..+.++++|++|++++|..+..+|.++
T Consensus 623 l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 623 LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence 344444445555555555555443444543 4455555555555555455555555555555555555554455555444
Q ss_pred CCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCccccc
Q 002115 690 GELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAG 769 (965)
Q Consensus 690 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~ 769 (965)
++++|+.|.+..+......+. ...+|+.|..-++ .+..+|. . ..+++|++|.+..+.......
T Consensus 702 -~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n-~i~~lP~-------~-~~l~~L~~L~l~~~~~~~l~~---- 764 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDET-AIEEFPS-------N-LRLENLDELILCEMKSEKLWE---- 764 (1153)
T ss_pred -CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCC-ccccccc-------c-ccccccccccccccchhhccc----
Confidence 445555554443322110010 0111111111000 0111110 1 123445555444321000000
Q ss_pred CCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCCC
Q 002115 770 RRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGVQ 849 (965)
Q Consensus 770 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~ 849 (965)
... .........+++|+.|+|++|..... +| .++.++++|+.|+|++|...+.+|...++++|+.|+|++|.
T Consensus 765 ~~~------~l~~~~~~~~~sL~~L~Ls~n~~l~~-lP-~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 765 RVQ------PLTPLMTMLSPSLTRLFLSDIPSLVE-LP-SSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCS 836 (1153)
T ss_pred ccc------ccchhhhhccccchheeCCCCCCccc-cC-hhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCC
Confidence 000 00000112357899999998865443 66 67889999999999999888888886688999999999987
Q ss_pred CceEeCccccCCCCCCCCccccCCcccccccccccccccccCcccccccccccCcccceEeeccCccCcCCCcCCCCCCC
Q 002115 850 SVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPDRLLQKTT 929 (965)
Q Consensus 850 ~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~l~~l~~ 929 (965)
.+..++. ..++|+.|+++++. ++ .+|..+..+++|+.|+|++|+++..+|..+..+++
T Consensus 837 ~L~~~p~---------------~~~nL~~L~Ls~n~-i~------~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~ 894 (1153)
T PLN03210 837 RLRTFPD---------------ISTNISDLNLSRTG-IE------EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKH 894 (1153)
T ss_pred ccccccc---------------cccccCEeECCCCC-Cc------cChHHHhcCCCCCEEECCCCCCcCccCcccccccC
Confidence 6643321 24578888876642 32 35666778999999999999999999988889999
Q ss_pred CCeEeEcCCcchHH
Q 002115 930 LQALTIGECPILEE 943 (965)
Q Consensus 930 L~~L~l~~c~~l~~ 943 (965)
|+.+++++|++|+.
T Consensus 895 L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 895 LETVDFSDCGALTE 908 (1153)
T ss_pred CCeeecCCCccccc
Confidence 99999999998864
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.2e-44 Score=388.10 Aligned_cols=278 Identities=38% Similarity=0.608 Sum_probs=227.4
Q ss_pred chHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcC
Q 002115 183 REEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTG 262 (965)
Q Consensus 183 r~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 262 (965)
||.++++|.++|.... .+.++|+|+||||+||||||++++++..++.+|+.++||.++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998743 478999999999999999999999987789999999999999999999999999999987
Q ss_pred CCC---CCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchHHHhhcCC-cceEeC
Q 002115 263 SAS---NFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEIVARCMRS-TNVIYV 338 (965)
Q Consensus 263 ~~~---~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~-~~~~~l 338 (965)
... ...+.+.....+.+.+.++++||||||||+.. .|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc--cccccccccccccccccccccccccccccccccccccccc
Confidence 743 45678889999999999999999999999854 788888888887789999999999988876654 779999
Q ss_pred CCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhhcCCCCHHHHHHHHhhhhhhhhh---hh
Q 002115 339 NVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLLQSRNTEKEWQNILESEIWELEE---VE 415 (965)
Q Consensus 339 ~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~---~~ 415 (965)
++|+++++++||.+.++... ....+.+++.+++|+++|+|+|||++++|++|+.+.+..+|.+++++......+ ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987655 223345567899999999999999999999997766778899988876555432 24
Q ss_pred hhhhhHHHHhhcCCcHhHHHHHhHhcccCCCceecHHHHHHHHHhCCccccC
Q 002115 416 RGLLAPLLLSYNELPSKIKQCFTYCAIFPKDYQIQKKELINLWMAQGYLSKK 467 (965)
Q Consensus 416 ~~i~~~l~~sy~~L~~~lk~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~ 467 (965)
..+..++.+||+.||+++|.||+|||+||+++.|+++.|+++|++||||...
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 6799999999999999999999999999999999999999999999999865
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=4e-26 Score=288.14 Aligned_cols=365 Identities=21% Similarity=0.277 Sum_probs=215.9
Q ss_pred eEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchH-HhhcCCccceEEcCcccccc--------------
Q 002115 541 KVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQ-LFDKLTCLRALTLGVHSLRL-------------- 605 (965)
Q Consensus 541 ~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~-~~~~l~~Lr~L~L~~n~l~~-------------- 605 (965)
+++.+.+..+.+.......+..+++|++|.+.++.. ...+|. .+..+++|++|+|++|+++.
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~---~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~ 146 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL---SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLD 146 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc---CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEE
Confidence 455566655544332233333566666666665542 111232 23355566666665544320
Q ss_pred -cccch-hhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccc
Q 002115 606 -CENCI-KEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLR 683 (965)
Q Consensus 606 -~~~~i-~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~ 683 (965)
.++.+ ..+|..++++.+|++|+|++|.+...+|..++++++|++|++++|.....+|..++++++|++|++++|....
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 01222 2456667777777777777776445667777777777777777776555667677777777777777775555
Q ss_pred cccccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCC
Q 002115 684 YLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDG 763 (965)
Q Consensus 684 ~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~ 763 (965)
.+|..++++++|+.|++..+......+..+..+++|+.|....+...+.++ ..+..+++|+.|++++|.+.+.
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-------~~l~~l~~L~~L~Ls~n~l~~~ 299 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-------PSIFSLQKLISLDLSDNSLSGE 299 (968)
T ss_pred cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc-------hhHhhccCcCEEECcCCeeccC
Confidence 667777777777777776665544334444444444444333222222222 3445566777777777654332
Q ss_pred CcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcce
Q 002115 764 DEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEV 842 (965)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~ 842 (965)
++..+..+++|+.|++++|.+... .| .++..+++|+.|+|++|.+...+|. ++.+++|+.
T Consensus 300 -----------------~p~~~~~l~~L~~L~l~~n~~~~~-~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~ 360 (968)
T PLN00113 300 -----------------IPELVIQLQNLEILHLFSNNFTGK-IP-VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360 (968)
T ss_pred -----------------CChhHcCCCCCcEEECCCCccCCc-CC-hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcE
Confidence 234455667788888877776542 34 5677778888888888877766665 777788888
Q ss_pred eeecCCCCceEeCccccCCCC------------CCCCccccCCcccccccccccccccccCcccccccccccCcccceEe
Q 002115 843 LEIYGVQSVKRVGNEFLGVES------------DTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLS 910 (965)
Q Consensus 843 L~L~~~~~l~~~~~~~~~~~~------------~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~ 910 (965)
|++++|.....++..+..... .........+++|+.|++.+|. +.+..|..+..+++|+.|+
T Consensus 361 L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~------l~~~~p~~~~~l~~L~~L~ 434 (968)
T PLN00113 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS------FSGELPSEFTKLPLVYFLD 434 (968)
T ss_pred EECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE------eeeECChhHhcCCCCCEEE
Confidence 888776532222222111000 0000112345666666655543 3344566677888888888
Q ss_pred eccCccCcCCCcCCCCCCCCCeEeEcCCcc
Q 002115 911 IRRCPKLKALPDRLLQKTTLQALTIGECPI 940 (965)
Q Consensus 911 L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 940 (965)
|++|.....+|..+..+++|+.|++++|.-
T Consensus 435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred CcCCcccCccChhhccCCCCcEEECcCcee
Confidence 888886667777777788899999888863
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=4.2e-26 Score=288.00 Aligned_cols=355 Identities=20% Similarity=0.239 Sum_probs=176.6
Q ss_pred hcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhh
Q 002115 562 HVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETL 641 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i 641 (965)
++++|++|.+.++. +...+|..+.++++|+.|+|++|.++ ..+|..++++++|++|++++|.+...+|..+
T Consensus 186 ~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~L~~n~l~------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 256 (968)
T PLN00113 186 NLTSLEFLTLASNQ---LVGQIPRELGQMKSLKWIYLGYNNLS------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256 (968)
T ss_pred hCcCCCeeeccCCC---CcCcCChHHcCcCCccEEECcCCccC------CcCChhHhcCCCCCEEECcCceeccccChhH
Confidence 44444444444433 12223444444444444444433322 2344445555555555555554333445555
Q ss_pred hccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCc
Q 002115 642 CELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNL 721 (965)
Q Consensus 642 ~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 721 (965)
+++++|++|++++|.....+|..+.++++|++|++++|.....+|..+.++++|+.|++..+......+..+..+++|+.
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 336 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336 (968)
T ss_pred hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence 55555555555555433344555555555555555555444444555555555555555444443322222333333332
Q ss_pred CCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCC-------hhhhHHhhhcCCCCCCCceE
Q 002115 722 LRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNE-------EDEDERLLEALGPPPNLKEL 794 (965)
Q Consensus 722 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~L~~L 794 (965)
|...++...+.++ ..+..+++|+.|++++|.+.+..+..+...... ......++..+..+++|+.|
T Consensus 337 L~L~~n~l~~~~p-------~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L 409 (968)
T PLN00113 337 LQLWSNKFSGEIP-------KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409 (968)
T ss_pred EECcCCCCcCcCC-------hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence 2222221111222 234455666666666665543322211110000 00111223344456667777
Q ss_pred EEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCCCCceEeCccccCC----------C-
Q 002115 795 RIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGVQSVKRVGNEFLGV----------E- 862 (965)
Q Consensus 795 ~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~----------~- 862 (965)
++.+|.+... .| ..+..+++|+.|+|++|.+...+|. +..+++|+.|++++|.....++..+... .
T Consensus 410 ~L~~n~l~~~-~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l 487 (968)
T PLN00113 410 RLQDNSFSGE-LP-SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF 487 (968)
T ss_pred ECcCCEeeeE-CC-hhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCcc
Confidence 7776665542 34 5566677777777777766665554 5667777777777765322222111000 0
Q ss_pred CCCCCccccCCcccccccccccccccccCcccccccccccCcccceEeeccCccCcCCCcCCCCCCCCCeEeEcCCcc
Q 002115 863 SDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPDRLLQKTTLQALTIGECPI 940 (965)
Q Consensus 863 ~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 940 (965)
.......+..+++|+.|++++| .+.+.+|..+..+++|+.|+|++|.....+|..+..+++|+.|++++|+.
T Consensus 488 ~~~~~~~~~~l~~L~~L~Ls~N------~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 488 SGAVPRKLGSLSELMQLKLSEN------KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred CCccChhhhhhhccCEEECcCC------cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence 0000001123344444444333 23445667777888888899888887777888888888999999988864
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=1.9e-26 Score=244.96 Aligned_cols=343 Identities=21% Similarity=0.251 Sum_probs=270.3
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhc
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIEN 619 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~ 619 (965)
..++.|.+.......+|.... .+.+|..|.+.+|.... +...++.++.||.+++..|++. + ..+|..|.+
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~-~lqkLEHLs~~HN~L~~----vhGELs~Lp~LRsv~~R~N~LK--n---sGiP~diF~ 101 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELS-RLQKLEHLSMAHNQLIS----VHGELSDLPRLRSVIVRDNNLK--N---SGIPTDIFR 101 (1255)
T ss_pred hheeEEEechhhhhhChHHHH-HHhhhhhhhhhhhhhHh----hhhhhccchhhHHHhhhccccc--c---CCCCchhcc
Confidence 467778888888777787777 88889999888886422 2223678889999999977765 3 346889999
Q ss_pred cCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCcc-ccCCCCccEeecCCCcccccccccCCCccccccc
Q 002115 620 LLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQG-IGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIV 698 (965)
Q Consensus 620 L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 698 (965)
|..|..|+||+|+ +++.|..+..-+++-+|+|++|+ +.++|.. +.+|+.|-+|+|++| .+..+|+.+..|..||+|
T Consensus 102 l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTL 178 (1255)
T ss_pred cccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhh
Confidence 9999999999999 99999999999999999999998 8999977 578999999999998 788999999999999999
Q ss_pred CceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhh
Q 002115 699 KEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDED 778 (965)
Q Consensus 699 ~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~ 778 (965)
.+++|.... ..+..|++++.|..+.+++... ....++.++..+.+|..++++.|++.
T Consensus 179 ~Ls~NPL~h---fQLrQLPsmtsL~vLhms~TqR---Tl~N~Ptsld~l~NL~dvDlS~N~Lp----------------- 235 (1255)
T KOG0444|consen 179 KLSNNPLNH---FQLRQLPSMTSLSVLHMSNTQR---TLDNIPTSLDDLHNLRDVDLSENNLP----------------- 235 (1255)
T ss_pred hcCCChhhH---HHHhcCccchhhhhhhcccccc---hhhcCCCchhhhhhhhhccccccCCC-----------------
Confidence 999887653 4456677777776666554321 11223367788899999999999543
Q ss_pred HHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCCCCceEeCcc
Q 002115 779 ERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGVQSVKRVGNE 857 (965)
Q Consensus 779 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~~~l~~~~~~ 857 (965)
.+++.+..+++|++|+|++|.+++ +. .......+|++|+|+.|.++. +|. +.+|+.|+.|.+.++. -.
T Consensus 236 -~vPecly~l~~LrrLNLS~N~ite--L~-~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~Nk------L~ 304 (1255)
T KOG0444|consen 236 -IVPECLYKLRNLRRLNLSGNKITE--LN-MTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNK------LT 304 (1255)
T ss_pred -cchHHHhhhhhhheeccCcCceee--ee-ccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCc------cc
Confidence 356788889999999999999988 55 445567899999999997654 555 9999999999997754 22
Q ss_pred ccCCCCCCCCccccCCcccccccccccccccccCcccccccccccCcccceEeeccCccCcCCCcCCCCCCCCCeEeEcC
Q 002115 858 FLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPDRLLQKTTLQALTIGE 937 (965)
Q Consensus 858 ~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~ 937 (965)
|.|.. +.++.+.+|+.+...++. | +..|..+..|+.|+.|.|..|. +-.+|.++.-++.|+.|++..
T Consensus 305 FeGiP-----SGIGKL~~Levf~aanN~-L------ElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlre 371 (1255)
T KOG0444|consen 305 FEGIP-----SGIGKLIQLEVFHAANNK-L------ELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRE 371 (1255)
T ss_pred ccCCc-----cchhhhhhhHHHHhhccc-c------ccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccC
Confidence 33322 223456677777765542 2 3457778899999999999886 667999999999999999999
Q ss_pred CcchH
Q 002115 938 CPILE 942 (965)
Q Consensus 938 c~~l~ 942 (965)
||+|.
T Consensus 372 NpnLV 376 (1255)
T KOG0444|consen 372 NPNLV 376 (1255)
T ss_pred CcCcc
Confidence 99875
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=8e-23 Score=216.68 Aligned_cols=348 Identities=19% Similarity=0.195 Sum_probs=181.9
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCccccccc-------------
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLC------------- 606 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~------------- 606 (965)
...+.|.+.+|.+.......|.++++|+.+.+..|... .+|.+.....+|..|+|.+|-++--
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt----~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT----RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh----hcccccccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence 45667777777776666666667778777777766531 1344233333455555553322100
Q ss_pred ----ccchhhHHh-hhhccCCCcEEEeCCccCccccch-hhhccCCCcEEeccCcccccccCcc-ccCCCCccEeecCCC
Q 002115 607 ----ENCIKEVRT-NIENLLHLKYLNLAHQREIEKLPE-TLCELYNLEHLDISYCRNLRELPQG-IGKLRKLMYLENDGT 679 (965)
Q Consensus 607 ----~~~i~~lp~-~i~~L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~LdL~~~~~l~~lP~~-i~~L~~L~~L~l~~~ 679 (965)
.+.|..+|. ++..=.++++|+|++|. |+.+-. .|.+|.+|-+|.|+.|. ++.+|.- |.+|++|+.|+|..|
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhcccc
Confidence 222222321 12233344445554444 443332 34444445555555444 4444433 233555555555444
Q ss_pred cccccc-cccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEee
Q 002115 680 YSLRYL-PVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFD 758 (965)
Q Consensus 680 ~~~~~~-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 758 (965)
.+..+ --.|.+|.+|+.|.+..|++.......|-.+.++..|..-.+... ......+-++++|+.|+|+.|
T Consensus 232 -~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-------~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 232 -RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-------AVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred -ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-------hhhcccccccchhhhhccchh
Confidence 22111 112444444444444444443333333344444443332222111 111134556666666666666
Q ss_pred ccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCC
Q 002115 759 HLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKL 837 (965)
Q Consensus 759 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L 837 (965)
.+... ..+...-+++|+.|+|++|.+.. +++..|..+..|+.|.|++|.+...-.. |..+
T Consensus 304 aI~ri-----------------h~d~WsftqkL~~LdLs~N~i~~--l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l 364 (873)
T KOG4194|consen 304 AIQRI-----------------HIDSWSFTQKLKELDLSSNRITR--LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL 364 (873)
T ss_pred hhhee-----------------ecchhhhcccceeEecccccccc--CChhHHHHHHHhhhhcccccchHHHHhhHHHHh
Confidence 43221 12344556778888888888777 7667777788888888888765432222 6677
Q ss_pred CCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccccccccccccccccCcccccccccccCcccceEeeccCccC
Q 002115 838 PSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKL 917 (965)
Q Consensus 838 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 917 (965)
.+|+.|+|+++.---.+.. +. ....++|+|+.|.+.++. |+.+.- ..|..+++|+.|+|.+|+..
T Consensus 365 ssL~~LdLr~N~ls~~IED---aa------~~f~gl~~LrkL~l~gNq-lk~I~k-----rAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 365 SSLHKLDLRSNELSWCIED---AA------VAFNGLPSLRKLRLTGNQ-LKSIPK-----RAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred hhhhhhcCcCCeEEEEEec---ch------hhhccchhhhheeecCce-eeecch-----hhhccCcccceecCCCCcce
Confidence 7888888877542111111 00 012367788888777653 554431 34556788888888888765
Q ss_pred cCCCcCCCCCCCCCeEeEc
Q 002115 918 KALPDRLLQKTTLQALTIG 936 (965)
Q Consensus 918 ~~lp~~l~~l~~L~~L~l~ 936 (965)
..-|..+..+ .|++|.+.
T Consensus 430 SIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 430 SIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred eecccccccc-hhhhhhhc
Confidence 5556667766 77777664
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=1.6e-23 Score=222.98 Aligned_cols=344 Identities=25% Similarity=0.280 Sum_probs=257.1
Q ss_pred cccccccCcceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccch
Q 002115 531 NSFMRSFGEKKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCI 610 (965)
Q Consensus 531 ~~~~~~~~~~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i 610 (965)
..|......+++.||++..|....+..... .+++||++.+.+|..... . +|..+-++..|.+|||| ++.+
T Consensus 46 ~vPeEL~~lqkLEHLs~~HN~L~~vhGELs-~Lp~LRsv~~R~N~LKns-G-iP~diF~l~dLt~lDLS-------hNqL 115 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAHNQLISVHGELS-DLPRLRSVIVRDNNLKNS-G-IPTDIFRLKDLTILDLS-------HNQL 115 (1255)
T ss_pred hChHHHHHHhhhhhhhhhhhhhHhhhhhhc-cchhhHHHhhhccccccC-C-CCchhcccccceeeecc-------hhhh
Confidence 334333344788999998888776655555 899999999998875322 3 45557789999999999 5556
Q ss_pred hhHHhhhhccCCCcEEEeCCccCccccchh-hhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccC
Q 002115 611 KEVRTNIENLLHLKYLNLAHQREIEKLPET-LCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGI 689 (965)
Q Consensus 611 ~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i 689 (965)
.+.|..+.+-+++-.|+||+|+ |..+|.. +-+|..|-+|||++|. +..+|+.+..|.+|+.|.|++|.....--..+
T Consensus 116 ~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL 193 (1255)
T KOG0444|consen 116 REVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQL 193 (1255)
T ss_pred hhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcC
Confidence 7889999999999999999999 9999974 6689999999999999 99999999999999999999995433222345
Q ss_pred CCcccccccCceEecCcc-CCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccc
Q 002115 690 GELIRLRIVKEFVVGGGY-DRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQA 768 (965)
Q Consensus 690 ~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~ 768 (965)
..|++|++|++++..... ..+..+..+.+|..+.... ..+..+| ..+-.+.+|+.|+|++|.++...
T Consensus 194 PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vP-------ecly~l~~LrrLNLS~N~iteL~---- 261 (1255)
T KOG0444|consen 194 PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVP-------ECLYKLRNLRRLNLSGNKITELN---- 261 (1255)
T ss_pred ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcch-------HHHhhhhhhheeccCcCceeeee----
Confidence 567888888887765433 2345555666665554332 2344444 45677899999999999765421
Q ss_pred cCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCC-CCCCC-CCCCCCcceeeec
Q 002115 769 GRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNC-EHLPP-LGKLPSIEVLEIY 846 (965)
Q Consensus 769 ~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~-~~lp~-l~~L~~L~~L~L~ 846 (965)
-......+|++|+++.|..+. +| ..+..++.|+.|.+.+|.+. +.+|+ +|+|.+|+.+...
T Consensus 262 --------------~~~~~W~~lEtLNlSrNQLt~--LP-~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aa 324 (1255)
T KOG0444|consen 262 --------------MTEGEWENLETLNLSRNQLTV--LP-DAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAA 324 (1255)
T ss_pred --------------ccHHHHhhhhhhccccchhcc--ch-HHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhh
Confidence 112234589999999999998 99 88999999999999999765 45777 9999999999987
Q ss_pred CCCCceEeCccccCCCCCCCCccccCCcccccccccccccccccCcccccccccccCcccceEeeccCccCcCCCcCCCC
Q 002115 847 GVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPDRLLQ 926 (965)
Q Consensus 847 ~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~l~~ 926 (965)
++. ++.++..+. .+++|+.|.|..+. | -.+|+.+.-+|.|+.|++..|+++..-|.--..
T Consensus 325 nN~-LElVPEglc------------RC~kL~kL~L~~Nr-L------iTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da 384 (1255)
T KOG0444|consen 325 NNK-LELVPEGLC------------RCVKLQKLKLDHNR-L------ITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDA 384 (1255)
T ss_pred ccc-cccCchhhh------------hhHHHHHhcccccc-e------eechhhhhhcCCcceeeccCCcCccCCCCcchh
Confidence 754 555555443 58899999876653 2 125677778999999999999999866643332
Q ss_pred CCCCCeEeE
Q 002115 927 KTTLQALTI 935 (965)
Q Consensus 927 l~~L~~L~l 935 (965)
-++|+.-+|
T Consensus 385 ~~~lefYNI 393 (1255)
T KOG0444|consen 385 RKKLEFYNI 393 (1255)
T ss_pred hhcceeeec
Confidence 344444444
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=3.3e-21 Score=204.50 Aligned_cols=339 Identities=20% Similarity=0.198 Sum_probs=211.5
Q ss_pred CceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccc-hhhh
Q 002115 564 KRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLP-ETLC 642 (965)
Q Consensus 564 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp-~~i~ 642 (965)
+.-++|++++|. +.++-+..|.++++|+.+.+. .+.+..+|...+...||+.|+|.+|. |..+. +.+.
T Consensus 78 ~~t~~LdlsnNk---l~~id~~~f~nl~nLq~v~l~-------~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~ 146 (873)
T KOG4194|consen 78 SQTQTLDLSNNK---LSHIDFEFFYNLPNLQEVNLN-------KNELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELS 146 (873)
T ss_pred cceeeeeccccc---cccCcHHHHhcCCcceeeeec-------cchhhhcccccccccceeEEeeeccc-cccccHHHHH
Confidence 456789999987 444456779999999999999 55567888777778889999999988 55544 5788
Q ss_pred ccCCCcEEeccCcccccccCcc-ccCCCCccEeecCCCccccccc-ccCCCcccccccCceEecCccCCCCCccccccCC
Q 002115 643 ELYNLEHLDISYCRNLRELPQG-IGKLRKLMYLENDGTYSLRYLP-VGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLN 720 (965)
Q Consensus 643 ~L~~L~~LdL~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 720 (965)
.++.|++|||+.|. +.++|.. +..=.++++|+|++|. ++.+- ..|.++.+|-+|.+..|.+.......|..|++|+
T Consensus 147 ~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~ 224 (873)
T KOG4194|consen 147 ALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLE 224 (873)
T ss_pred hHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcccccCHHHhhhcchhh
Confidence 88888888888887 7776653 4555678888888773 33332 3466677777777777776665555555566665
Q ss_pred cCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCCh------hh-hHHhhhcCCCCCCCce
Q 002115 721 LLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEE------DE-DERLLEALGPPPNLKE 793 (965)
Q Consensus 721 ~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~------~~-~~~~~~~l~~~~~L~~ 793 (965)
.|..-.+.. +.+.. ..|.++++|+.|.|..|.+...+...+-.....+ .. ....-.++..+..|+.
T Consensus 225 ~LdLnrN~i-rive~------ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~ 297 (873)
T KOG4194|consen 225 SLDLNRNRI-RIVEG------LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQ 297 (873)
T ss_pred hhhccccce-eeehh------hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhh
Confidence 554222211 11100 1233444444444444433221110000000000 00 0011234556677777
Q ss_pred EEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccC
Q 002115 794 LRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIA 872 (965)
Q Consensus 794 L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~ 872 (965)
|++++|.+...... .| ..+++|+.|+|++|.+..--+. |..|..|+.|.|+.+. +..+.... +.+
T Consensus 298 L~lS~NaI~rih~d-~W-sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~a-----------f~~ 363 (873)
T KOG4194|consen 298 LDLSYNAIQRIHID-SW-SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGA-----------FVG 363 (873)
T ss_pred hccchhhhheeecc-hh-hhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhH-----------HHH
Confidence 77777776652222 33 5677777777777766553333 6777777777777654 32222211 235
Q ss_pred CcccccccccccccccccCcccccccccccCcccceEeeccCccCcCCCc-CCCCCCCCCeEeEcCCcc
Q 002115 873 FPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPD-RLLQKTTLQALTIGECPI 940 (965)
Q Consensus 873 f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~ 940 (965)
+.+|+.|+|+++. | .|.+++. ...+..||+|++|.+.+|. ++.+|. .+..+++|++|++.+|+-
T Consensus 364 lssL~~LdLr~N~-l-s~~IEDa-a~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 364 LSSLHKLDLRSNE-L-SWCIEDA-AVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hhhhhhhcCcCCe-E-EEEEecc-hhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCcc
Confidence 7888888877653 2 3444432 2345679999999999996 788884 578899999999999973
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=5.6e-23 Score=208.67 Aligned_cols=261 Identities=25% Similarity=0.307 Sum_probs=155.5
Q ss_pred EEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccC
Q 002115 542 VLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLL 621 (965)
Q Consensus 542 ~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~ 621 (965)
...+-+..|.......+.. ++..+.+|.+.++.. .. +|..++.+..+..|+.+ .+.+..+|..++.+.
T Consensus 47 l~~lils~N~l~~l~~dl~-nL~~l~vl~~~~n~l---~~-lp~aig~l~~l~~l~vs-------~n~ls~lp~~i~s~~ 114 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLK-NLACLTVLNVHDNKL---SQ-LPAAIGELEALKSLNVS-------HNKLSELPEQIGSLI 114 (565)
T ss_pred hhhhhhccCchhhccHhhh-cccceeEEEeccchh---hh-CCHHHHHHHHHHHhhcc-------cchHhhccHHHhhhh
Confidence 3444455555544444443 666667777766652 22 55567777777777777 455567777777777
Q ss_pred CCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccCce
Q 002115 622 HLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEF 701 (965)
Q Consensus 622 ~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~ 701 (965)
.|+.|++++|. ..++|++|+.+..|+.|+..+|+ +..+|.++..+.+|..|++.+| .+..+|+..-+++.|+.|+..
T Consensus 115 ~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~ 191 (565)
T KOG0472|consen 115 SLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCN 191 (565)
T ss_pred hhhhhhccccc-eeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccc
Confidence 77777777777 77777777777777777777776 6777777777777777777666 344455444446677777665
Q ss_pred EecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHh
Q 002115 702 VVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERL 781 (965)
Q Consensus 702 ~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~ 781 (965)
.+.... .+..++.+.+|..|..-.+ .+..+ ..|.+++.|.+|+++.|.+ +.+
T Consensus 192 ~N~L~t-lP~~lg~l~~L~~LyL~~N-ki~~l--------Pef~gcs~L~Elh~g~N~i------------------~~l 243 (565)
T KOG0472|consen 192 SNLLET-LPPELGGLESLELLYLRRN-KIRFL--------PEFPGCSLLKELHVGENQI------------------EML 243 (565)
T ss_pred hhhhhc-CChhhcchhhhHHHHhhhc-ccccC--------CCCCccHHHHHHHhcccHH------------------Hhh
Confidence 554443 2333333333332221111 11111 1344555666666666532 122
Q ss_pred h-hcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCCC
Q 002115 782 L-EALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGVQ 849 (965)
Q Consensus 782 ~-~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~ 849 (965)
+ +.+..+++|..|++..|...+ +| .-+..+.+|.+|++++|.++.-.+.+|+| +|+.|.+.|++
T Consensus 244 pae~~~~L~~l~vLDLRdNklke--~P-de~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDNKLKE--VP-DEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HHHHhcccccceeeecccccccc--Cc-hHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 2 223456667777777777776 66 55666777777777777666555557777 77777776654
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=2.4e-19 Score=226.17 Aligned_cols=325 Identities=18% Similarity=0.203 Sum_probs=179.8
Q ss_pred chHHhhcCCccceEEcCcccccccccchhhHHhhhhccC-CCcEEEeCCccCccccchhhhccCCCcEEeccCccccccc
Q 002115 583 LPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLL-HLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLREL 661 (965)
Q Consensus 583 l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~-~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~l 661 (965)
.+..|.++++|+.|.+..+...........+|..+..++ +||+|.+.++. ++.+|..+ .+.+|+.|++++|. +..+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s~-l~~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGSK-LEKL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcC-CccCCcEEECcCcc-cccc
Confidence 456799999999999964422100011112344444443 35555555555 55555544 34555555555554 4555
Q ss_pred CccccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHH
Q 002115 662 PQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARR 741 (965)
Q Consensus 662 P~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~ 741 (965)
|.++..+++|+.|+++++..+..+|. ++.+++|++|++..+......+..+..+++|+.|...++..++.+|.
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~------ 699 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT------ 699 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC------
Confidence 55555555555555555444444442 44455555555544332222222222222222222222222222221
Q ss_pred hhccCCCCCCceEEEeeccCCCCcccccCCCCC---hhhhHHhhhcCCCCCCCceEEEeeecCCC-----CCCChhhHhh
Q 002115 742 AELEKKKNLSNLELHFDHLRDGDEEQAGRRDNE---EDEDERLLEALGPPPNLKELRIYQYRGRR-----NVVPKIWITS 813 (965)
Q Consensus 742 ~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~L~~L~L~~~~~~~-----~~~p~~~~~~ 813 (965)
. .++++|+.|++++|......+......... ......++..+ .+++|+.|.+.++.... ..+++..+..
T Consensus 700 -~-i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 700 -G-INLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred -c-CCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhc
Confidence 1 133444555544442111000000000000 00001111111 35667777766533211 0011122334
Q ss_pred ccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccccccccccccccccCc
Q 002115 814 LTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDF 892 (965)
Q Consensus 814 l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~ 892 (965)
+++|+.|+|++|.....+|. +++|++|+.|+|.+|..++.++... .+++|+.|+|++|.+|..+.-
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-------------~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------------NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-------------CccccCEEECCCCCccccccc
Confidence 67899999999988887887 9999999999999998887665432 478999999999987765421
Q ss_pred ccccccccccCcccceEeeccCccCcCCCcCCCCCCCCCeEeEcCCcchHH
Q 002115 893 GTAINGEIMIMPRLSSLSIRRCPKLKALPDRLLQKTTLQALTIGECPILEE 943 (965)
Q Consensus 893 ~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~ 943 (965)
..++|+.|+|++|. +..+|..+..+++|+.|++++|+.++.
T Consensus 844 ---------~~~nL~~L~Ls~n~-i~~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 844 ---------ISTNISDLNLSRTG-IEEVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred ---------cccccCEeECCCCC-CccChHHHhcCCCCCEEECCCCCCcCc
Confidence 34789999999985 778999999999999999999998765
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=4.2e-20 Score=187.92 Aligned_cols=244 Identities=25% Similarity=0.314 Sum_probs=195.1
Q ss_pred hcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhh
Q 002115 562 HVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETL 641 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i 641 (965)
.-..+..|.+.++.. .. +...+.++..|.+|++. ++.+..+|.+|+.+..+..|+.++|+ +.++|+.+
T Consensus 43 ~qv~l~~lils~N~l---~~-l~~dl~nL~~l~vl~~~-------~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i 110 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDL---EV-LREDLKNLACLTVLNVH-------DNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQI 110 (565)
T ss_pred hhcchhhhhhccCch---hh-ccHhhhcccceeEEEec-------cchhhhCCHHHHHHHHHHHhhcccch-HhhccHHH
Confidence 445577778877763 23 33338899999999999 56667899999999999999999999 99999999
Q ss_pred hccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCc
Q 002115 642 CELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNL 721 (965)
Q Consensus 642 ~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 721 (965)
+.+..|..|+++.|. ..++|++++.+..|..|+..+| .+.++|.+++.+.+|..|.+..+......+..+. ++.|++
T Consensus 111 ~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ 187 (565)
T KOG0472|consen 111 GSLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKH 187 (565)
T ss_pred hhhhhhhhhhccccc-eeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHh
Confidence 999999999999998 8999999999999999999888 6778999999999999998887776653333333 555555
Q ss_pred CCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecC
Q 002115 722 LRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRG 801 (965)
Q Consensus 722 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 801 (965)
|....+ .++.+| ..++.+.+|.-|+|..|.+. +++.+..|+.|+.|++..|.+
T Consensus 188 ld~~~N-~L~tlP-------~~lg~l~~L~~LyL~~Nki~-------------------~lPef~gcs~L~Elh~g~N~i 240 (565)
T KOG0472|consen 188 LDCNSN-LLETLP-------PELGGLESLELLYLRRNKIR-------------------FLPEFPGCSLLKELHVGENQI 240 (565)
T ss_pred cccchh-hhhcCC-------hhhcchhhhHHHHhhhcccc-------------------cCCCCCccHHHHHHHhcccHH
Confidence 543222 233344 56788899999999988542 234778899999999999998
Q ss_pred CCCCCChhhHhhccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCCC
Q 002115 802 RRNVVPKIWITSLTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGVQ 849 (965)
Q Consensus 802 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~ 849 (965)
.. +|......+++|..|+|++|++.+....+..|.+|++|+++++.
T Consensus 241 ~~--lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 241 EM--LPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred Hh--hHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc
Confidence 87 88555558999999999999765543348889999999999865
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.62 E-value=1.3e-17 Score=187.27 Aligned_cols=338 Identities=23% Similarity=0.283 Sum_probs=184.5
Q ss_pred EEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCC
Q 002115 543 LHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLH 622 (965)
Q Consensus 543 r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~ 622 (965)
.++.+..|..-..|..+..+.-+|.+|+++++..+ .+|..+..+.+|+.|+++ .+.|..+|.+++++.+
T Consensus 24 ~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~----~fp~~it~l~~L~~ln~s-------~n~i~~vp~s~~~~~~ 92 (1081)
T KOG0618|consen 24 QILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS----SFPIQITLLSHLRQLNLS-------RNYIRSVPSSCSNMRN 92 (1081)
T ss_pred HhhhccccccccCchHHhhheeeeEEeeccccccc----cCCchhhhHHHHhhcccc-------hhhHhhCchhhhhhhc
Confidence 33444434333333444444555888888877532 256567778888888888 6667788888888888
Q ss_pred CcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccc-------------------
Q 002115 623 LKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLR------------------- 683 (965)
Q Consensus 623 Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~------------------- 683 (965)
|+||+|.+|. +..+|.++..+++|+.||+++|. ....|.-+..+..+..+..++|..+.
T Consensus 93 l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~ 170 (1081)
T KOG0618|consen 93 LQYLNLKNNR-LQSLPASISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGG 170 (1081)
T ss_pred chhheeccch-hhcCchhHHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhccc
Confidence 8888888888 88888888888888888888887 66777767666666666666663222
Q ss_pred cccccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCC
Q 002115 684 YLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDG 763 (965)
Q Consensus 684 ~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~ 763 (965)
.++.++..++. +|++..+.... ..+..+.+|+.|..-.+... . .-..-++|+.|..+.|.++..
T Consensus 171 ~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls-~----------l~~~g~~l~~L~a~~n~l~~~ 234 (1081)
T KOG0618|consen 171 SFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLS-E----------LEISGPSLTALYADHNPLTTL 234 (1081)
T ss_pred chhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccc-e----------EEecCcchheeeeccCcceee
Confidence 22333333322 23333322210 11111222221111000000 0 000112333333333322111
Q ss_pred CcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCC---------------
Q 002115 764 DEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNC--------------- 828 (965)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~--------------- 828 (965)
..-..+.+|++++++.+.+.. +| +|+..+.+|+.|...+|.++
T Consensus 235 -------------------~~~p~p~nl~~~dis~n~l~~--lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 235 -------------------DVHPVPLNLQYLDISHNNLSN--LP-EWIGACANLEALNANHNRLVALPLRISRITSLVSL 292 (1081)
T ss_pred -------------------ccccccccceeeecchhhhhc--ch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHH
Confidence 111223466666666666666 66 66666666666666655432
Q ss_pred -------CCCCC-CCCCCCcceeeecCCCCceEeCccccCCCC--------------CCCCccccCCccccccccccccc
Q 002115 829 -------EHLPP-LGKLPSIEVLEIYGVQSVKRVGNEFLGVES--------------DTDGSSVIAFPKLKQLRFDEMDV 886 (965)
Q Consensus 829 -------~~lp~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~--------------~~~~~~~~~f~~L~~L~l~~~~~ 886 (965)
+.+|+ ++++.+|++|+|..+. +..++..+..... ...+.....++.|+.|.+.++.
T Consensus 293 ~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~- 370 (1081)
T KOG0618|consen 293 SAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH- 370 (1081)
T ss_pred HhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc-
Confidence 22334 6668899999998754 3333222211100 0001112245556666554432
Q ss_pred ccccCcccccccccccCcccceEeeccCccCcCCCc-CCCCCCCCCeEeEcCCc
Q 002115 887 LEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPD-RLLQKTTLQALTIGECP 939 (965)
Q Consensus 887 L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~c~ 939 (965)
|.+.+ -+.+..+++|+.|+|++|. +.++|. .+.++..|++|+++||.
T Consensus 371 Ltd~c-----~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNk 418 (1081)
T KOG0618|consen 371 LTDSC-----FPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNK 418 (1081)
T ss_pred ccccc-----hhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccch
Confidence 33322 2344577888888888886 666774 46677788888888774
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=2.3e-14 Score=167.46 Aligned_cols=93 Identities=22% Similarity=0.117 Sum_probs=50.6
Q ss_pred ccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCc
Q 002115 592 CLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKL 671 (965)
Q Consensus 592 ~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L 671 (965)
+|+.|++++|++ ..+|. .+++|++|+|++|. ++.+|.. .++|++|++++|. +..+|.. ..+|
T Consensus 223 ~L~~L~L~~N~L-------t~LP~---lp~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~l---p~~L 284 (788)
T PRK15387 223 HITTLVIPDNNL-------TSLPA---LPPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSNP-LTHLPAL---PSGL 284 (788)
T ss_pred CCCEEEccCCcC-------CCCCC---CCCCCcEEEecCCc-cCcccCc---ccccceeeccCCc-hhhhhhc---hhhc
Confidence 566666663333 33443 13566666666666 6666642 3456666666665 5555542 2456
Q ss_pred cEeecCCCcccccccccCCCcccccccCceEecCc
Q 002115 672 MYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGG 706 (965)
Q Consensus 672 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~ 706 (965)
+.|++++| .+..+|.. +++|+.|++..|.+.
T Consensus 285 ~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 285 CKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLA 315 (788)
T ss_pred CEEECcCC-cccccccc---ccccceeECCCCccc
Confidence 66666666 34455542 245666666555443
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.54 E-value=4.9e-16 Score=174.84 Aligned_cols=344 Identities=19% Similarity=0.165 Sum_probs=212.0
Q ss_pred EeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEE
Q 002115 548 NLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLN 627 (965)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~ 627 (965)
+....+.+|...+ ....+..|.+..|.. ....-++..+.-+|++||++ ++.+...|..|..+.+|+.|+
T Consensus 6 s~~~l~~ip~~i~-~~~~~~~ln~~~N~~---l~~pl~~~~~~v~L~~l~ls-------nn~~~~fp~~it~l~~L~~ln 74 (1081)
T KOG0618|consen 6 SDEQLELIPEQIL-NNEALQILNLRRNSL---LSRPLEFVEKRVKLKSLDLS-------NNQISSFPIQITLLSHLRQLN 74 (1081)
T ss_pred ccccCcccchhhc-cHHHHHhhhcccccc---ccCchHHhhheeeeEEeecc-------ccccccCCchhhhHHHHhhcc
Confidence 3344444566665 333366666666542 11112334555569999999 555678899999999999999
Q ss_pred eCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccCceEecCcc
Q 002115 628 LAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGY 707 (965)
Q Consensus 628 L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~ 707 (965)
++.|. +...|.+++++.+|++|+|.+|. +..+|.++..+++|+.|++++| ....+|.-+..++.+..+...+|....
T Consensus 75 ~s~n~-i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~ 151 (1081)
T KOG0618|consen 75 LSRNY-IRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQ 151 (1081)
T ss_pred cchhh-HhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhh
Confidence 99999 99999999999999999999988 9999999999999999999999 566788888888887777776652211
Q ss_pred CCCCCccccccCCc--CCcceeec--cCCC---------CCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCC
Q 002115 708 DRACSLGSLKKLNL--LRYCRIHG--LGDV---------SDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNE 774 (965)
Q Consensus 708 ~~~~~~~~l~~L~~--L~~l~~~~--~~~~---------~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 774 (965)
.++... .+. |+...+.. ...+ ...... ...+.++.+|+.|....|.+..
T Consensus 152 ----~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~-~~dls~~~~l~~l~c~rn~ls~------------ 213 (1081)
T KOG0618|consen 152 ----RLGQTS-IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME-VLDLSNLANLEVLHCERNQLSE------------ 213 (1081)
T ss_pred ----hhcccc-chhhhhhhhhcccchhcchhhhheeeecccchhh-hhhhhhccchhhhhhhhcccce------------
Confidence 111111 111 11111110 0000 000000 1222333333333333332211
Q ss_pred hhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCCCCceEe
Q 002115 775 EDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGVQSVKRV 854 (965)
Q Consensus 775 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~~l~~~ 854 (965)
.--.-++|+.|....|..... .+ .....+|++++++.|.+.....+++.+++|+.|.+..+. +..+
T Consensus 214 ---------l~~~g~~l~~L~a~~n~l~~~-~~---~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~-l~~l 279 (1081)
T KOG0618|consen 214 ---------LEISGPSLTALYADHNPLTTL-DV---HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR-LVAL 279 (1081)
T ss_pred ---------EEecCcchheeeeccCcceee-cc---ccccccceeeecchhhhhcchHHHHhcccceEecccchh-HHhh
Confidence 001236788888888877641 11 124679999999999776544448899999999987654 2222
Q ss_pred CccccCCCC-----------CCCCccccCCcccccccccccccccccCc---c----------------cccc-cccccC
Q 002115 855 GNEFLGVES-----------DTDGSSVIAFPKLKQLRFDEMDVLEEWDF---G----------------TAIN-GEIMIM 903 (965)
Q Consensus 855 ~~~~~~~~~-----------~~~~~~~~~f~~L~~L~l~~~~~L~~~~~---~----------------~~~~-~~~~~~ 903 (965)
+..++.... .-.......+.+|++|+|..+. |.++.- . ...| .+-..+
T Consensus 280 p~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~ 358 (1081)
T KOG0618|consen 280 PLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNH 358 (1081)
T ss_pred HHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhh
Confidence 222211100 0001122357888888876542 333220 0 0001 122367
Q ss_pred cccceEeeccCccCcCCCcCCCCCCCCCeEeEcCC
Q 002115 904 PRLSSLSIRRCPKLKALPDRLLQKTTLQALTIGEC 938 (965)
Q Consensus 904 ~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c 938 (965)
+.|+.|.+.+|......-.-+.+...|+.|++++|
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence 89999999999865544446777899999999999
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=2.6e-13 Score=158.67 Aligned_cols=256 Identities=18% Similarity=0.160 Sum_probs=141.5
Q ss_pred EEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCC
Q 002115 544 HLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHL 623 (965)
Q Consensus 544 ~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~L 623 (965)
.|.+..+++..+|..+. ++|+.|.+.+|... . +|. ..++|++|+|++|++ ..+|.. ..+|
T Consensus 205 ~LdLs~~~LtsLP~~l~---~~L~~L~L~~N~Lt---~-LP~---lp~~Lk~LdLs~N~L-------tsLP~l---p~sL 264 (788)
T PRK15387 205 VLNVGESGLTTLPDCLP---AHITTLVIPDNNLT---S-LPA---LPPELRTLEVSGNQL-------TSLPVL---PPGL 264 (788)
T ss_pred EEEcCCCCCCcCCcchh---cCCCEEEccCCcCC---C-CCC---CCCCCcEEEecCCcc-------CcccCc---cccc
Confidence 45556666655555443 36777777766532 2 332 246778888874443 444432 3567
Q ss_pred cEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccCceEe
Q 002115 624 KYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVV 703 (965)
Q Consensus 624 r~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~ 703 (965)
+.|+|++|. +..+|..+ .+|+.|++++|. +..+|.. +++|++|++++| .+..+|.... +|+.|.+..|
T Consensus 265 ~~L~Ls~N~-L~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~lp~---~L~~L~Ls~N 332 (788)
T PRK15387 265 LELSIFSNP-LTHLPALP---SGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPALPS---ELCKLWAYNN 332 (788)
T ss_pred ceeeccCCc-hhhhhhch---hhcCEEECcCCc-ccccccc---ccccceeECCCC-ccccCCCCcc---cccccccccC
Confidence 777888777 67777532 457777788776 6677753 366778888777 4445554222 3334433322
Q ss_pred cCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhh
Q 002115 704 GGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLE 783 (965)
Q Consensus 704 ~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 783 (965)
.+.. +|. ...+|+.|+|++|.++... .
T Consensus 333 ~L~~-------------------------LP~----------lp~~Lq~LdLS~N~Ls~LP------------------~ 359 (788)
T PRK15387 333 QLTS-------------------------LPT----------LPSGLQELSVSDNQLASLP------------------T 359 (788)
T ss_pred cccc-------------------------ccc----------cccccceEecCCCccCCCC------------------C
Confidence 2111 110 0125667777776543211 0
Q ss_pred cCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCCCCceEeCccccCCCC
Q 002115 784 ALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGVQSVKRVGNEFLGVES 863 (965)
Q Consensus 784 ~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~ 863 (965)
.+++|+.|++++|.+.. +| .. ..+|+.|+|++|.+.. +|.+ .++|+.|++++|. ++.++.
T Consensus 360 ---lp~~L~~L~Ls~N~L~~--LP-~l---~~~L~~LdLs~N~Lt~-LP~l--~s~L~~LdLS~N~-LssIP~------- 419 (788)
T PRK15387 360 ---LPSELYKLWAYNNRLTS--LP-AL---PSGLKELIVSGNRLTS-LPVL--PSELKELMVSGNR-LTSLPM------- 419 (788)
T ss_pred ---CCcccceehhhcccccc--Cc-cc---ccccceEEecCCcccC-CCCc--ccCCCEEEccCCc-CCCCCc-------
Confidence 13466777777776665 55 22 3567777777775543 4432 3567777777643 221111
Q ss_pred CCCCccccCCcccccccccccccccccCcccccccccccCcccceEeeccCccCcC
Q 002115 864 DTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKA 919 (965)
Q Consensus 864 ~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~ 919 (965)
.+.+|+.|+++++. ++ .+|..+..+++|+.|+|++|+.-..
T Consensus 420 --------l~~~L~~L~Ls~Nq-Lt------~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 420 --------LPSGLLSLSVYRNQ-LT------RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred --------chhhhhhhhhccCc-cc------ccChHHhhccCCCeEECCCCCCCch
Confidence 23456666655532 22 3455566677777777777764433
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=1.1e-13 Score=162.86 Aligned_cols=138 Identities=20% Similarity=0.320 Sum_probs=86.4
Q ss_pred eEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhcc
Q 002115 541 KVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENL 620 (965)
Q Consensus 541 ~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L 620 (965)
+...+.+...+...+|..+. ++++.|.+.+|.. .. +|..+. .+|+.|+|++|. +..+|..+.
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip---~~L~~L~Ls~N~L---ts-LP~~l~--~nL~~L~Ls~N~-------LtsLP~~l~-- 240 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP---EQITTLILDNNEL---KS-LPENLQ--GNIKTLYANSNQ-------LTSIPATLP-- 240 (754)
T ss_pred CceEEEeCCCCcCcCCcccc---cCCcEEEecCCCC---Cc-CChhhc--cCCCEEECCCCc-------cccCChhhh--
Confidence 34456666666555554433 4677788777753 22 343332 478888888444 345555443
Q ss_pred CCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccCc
Q 002115 621 LHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKE 700 (965)
Q Consensus 621 ~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l 700 (965)
.+|+.|+|++|. +..+|..+. .+|++|++++|. +..+|..+. ++|++|++++| .+..+|..+. ++|+.|++
T Consensus 241 ~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~L 311 (754)
T PRK15370 241 DTIQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNV 311 (754)
T ss_pred ccccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHh
Confidence 368888888887 777887664 478888888776 667776653 47888888877 4555665443 35666665
Q ss_pred eEecC
Q 002115 701 FVVGG 705 (965)
Q Consensus 701 ~~~~~ 705 (965)
..|..
T Consensus 312 s~N~L 316 (754)
T PRK15370 312 QSNSL 316 (754)
T ss_pred cCCcc
Confidence 55443
No 18
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.43 E-value=1.8e-11 Score=154.43 Aligned_cols=293 Identities=14% Similarity=0.188 Sum_probs=181.6
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcC-CCCCHHHHHHH
Q 002115 177 ESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVS-EPFDEFRIARA 255 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~ 255 (965)
.+.++-|+.-.+.+-+ ....+++.|+|++|.||||++...... ++.++|+++. ...++..+...
T Consensus 13 ~~~~~~R~rl~~~l~~---------~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---------ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred ccccCcchHHHHHHhc---------ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHH
Confidence 4466777655554422 125679999999999999999998853 2368899996 44576777777
Q ss_pred HHHHhcCCCCC-------------CCCHHHHHHHHHHHhC--CceEEEEEeCCCcchhhchHhHHhh-hcCCCCCcEEEE
Q 002115 256 IIESLTGSASN-------------FGEFQSLMQHIQECVE--GKKFLLVLDDLWNEVYYKWEPFYKC-LKNGLHESKILI 319 (965)
Q Consensus 256 i~~~l~~~~~~-------------~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~-l~~~~~gs~ilv 319 (965)
++..+...... ..+...+...+...+. +.+++|||||+...+......+... +.....+.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 77777422111 0222333333333332 6799999999966443344444444 334456678999
Q ss_pred eecchH---HHhhcCCcceEeCC----CCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhhc
Q 002115 320 TTRKEI---VARCMRSTNVIYVN----VLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLLQ 392 (965)
Q Consensus 320 TtR~~~---v~~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~ 392 (965)
|||... ...........++. +|+.+|+.+||.......- -.+...+|.+.|+|.|+++..++..+.
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-------~~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-------EAAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC-------CHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999742 11111113345566 9999999999987542211 123467899999999999999887775
Q ss_pred CCCC-HHHHHHHHhhhhhhhhhh-hhhhhhHHH-HhhcCCcHhHHHHHhHhcccCCCceecHHHHHHHHHhCCccccCCC
Q 002115 393 SRNT-EKEWQNILESEIWELEEV-ERGLLAPLL-LSYNELPSKIKQCFTYCAIFPKDYQIQKKELINLWMAQGYLSKKGT 469 (965)
Q Consensus 393 ~~~~-~~~w~~~l~~~~~~~~~~-~~~i~~~l~-~sy~~L~~~lk~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~ 469 (965)
.... .... .+.+... ...+...+. -.+..||++.+..++..|++++ |+.+.+-.. ..
T Consensus 231 ~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~~~l~~~l------~~---- 290 (903)
T PRK04841 231 QNNSSLHDS-------ARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MNDALIVRV------TG---- 290 (903)
T ss_pred hCCCchhhh-------hHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccccc---CCHHHHHHH------cC----
Confidence 4432 1110 0111110 122434333 3478999999999999999973 443322211 11
Q ss_pred CcHHHHHHHHHHHHHhCCCccccccCCCCCeeEEEeChhHHHHHHHhh
Q 002115 470 KEMEDIGEEYFNILASRSFFQDFRRYGLGENYVCKMHDIVHDFAQFLC 517 (965)
Q Consensus 470 ~~~e~~~~~~l~~L~~~sl~~~~~~~~~~~~~~~~~Hdlv~~~a~~~~ 517 (965)
.+.+...+++|.++++|..... +...+|+.|++++++.+...
T Consensus 291 ---~~~~~~~L~~l~~~~l~~~~~~---~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 ---EENGQMRLEELERQGLFIQRMD---DSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---CCcHHHHHHHHHHCCCeeEeec---CCCCEEehhHHHHHHHHHHH
Confidence 1224678999999999753211 11236889999999987654
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=2.7e-15 Score=135.41 Aligned_cols=163 Identities=29% Similarity=0.347 Sum_probs=87.4
Q ss_pred cCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCC
Q 002115 589 KLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKL 668 (965)
Q Consensus 589 ~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L 668 (965)
++.++..|.|+ ++.+..+|..|..|.+|+.|++++|+ ++++|.+++.+++|+.|+++-|. +..+|.+|+.+
T Consensus 31 ~~s~ITrLtLS-------HNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~ 101 (264)
T KOG0617|consen 31 NMSNITRLTLS-------HNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSF 101 (264)
T ss_pred chhhhhhhhcc-------cCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCC
Confidence 34444555555 33334455555555555555555555 55555555555555555555554 55555555555
Q ss_pred CCccEeecCCCccc-ccccccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCC
Q 002115 669 RKLMYLENDGTYSL-RYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKK 747 (965)
Q Consensus 669 ~~L~~L~l~~~~~~-~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~ 747 (965)
+.|+.|++.+|+.. ..+|..|..|+.
T Consensus 102 p~levldltynnl~e~~lpgnff~m~t----------------------------------------------------- 128 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTT----------------------------------------------------- 128 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHH-----------------------------------------------------
Confidence 55555555544322 223333333333
Q ss_pred CCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCC
Q 002115 748 KNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRN 827 (965)
Q Consensus 748 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~ 827 (965)
|+-|.|+.|.+ +.++...+.+.+|+.|.+..|.... +| .-++.+..|+.|++.+|++
T Consensus 129 --lralyl~dndf------------------e~lp~dvg~lt~lqil~lrdndll~--lp-keig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 129 --LRALYLGDNDF------------------EILPPDVGKLTNLQILSLRDNDLLS--LP-KEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred --HHHHHhcCCCc------------------ccCChhhhhhcceeEEeeccCchhh--Cc-HHHHHHHHHHHHhccccee
Confidence 33444444421 2233344556666667776666666 77 6677777888888888766
Q ss_pred CCCCCCCCC
Q 002115 828 CEHLPPLGK 836 (965)
Q Consensus 828 ~~~lp~l~~ 836 (965)
....|.+++
T Consensus 186 ~vlppel~~ 194 (264)
T KOG0617|consen 186 TVLPPELAN 194 (264)
T ss_pred eecChhhhh
Confidence 554444444
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=4.6e-13 Score=157.83 Aligned_cols=116 Identities=20% Similarity=0.299 Sum_probs=69.6
Q ss_pred ceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhcc
Q 002115 565 RLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCEL 644 (965)
Q Consensus 565 ~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L 644 (965)
+...|.+.+..... +|..+. +.|+.|+|++ +.+..+|..+. .+|++|++++|. ++.+|..+.
T Consensus 179 ~~~~L~L~~~~Lts----LP~~Ip--~~L~~L~Ls~-------N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~-- 240 (754)
T PRK15370 179 NKTELRLKILGLTT----IPACIP--EQITTLILDN-------NELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP-- 240 (754)
T ss_pred CceEEEeCCCCcCc----CCcccc--cCCcEEEecC-------CCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--
Confidence 34556666554322 333221 3677777773 33445665543 477777777777 677776553
Q ss_pred CCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccCceEec
Q 002115 645 YNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVG 704 (965)
Q Consensus 645 ~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 704 (965)
.+|+.|+|++|. +..+|..+. .+|+.|++++| .+..+|..+. .+|+.|++..|.
T Consensus 241 ~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~ 294 (754)
T PRK15370 241 DTIQEMELSINR-ITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNS 294 (754)
T ss_pred ccccEEECcCCc-cCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCc
Confidence 367777777776 667776653 46777777766 4456666553 356666655443
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.41 E-value=1.1e-13 Score=165.62 Aligned_cols=324 Identities=24% Similarity=0.308 Sum_probs=214.3
Q ss_pred hcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHh-hhhccCCCcEEEeCCccCccccchh
Q 002115 562 HVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRT-NIENLLHLKYLNLAHQREIEKLPET 640 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~-~i~~L~~Lr~L~L~~~~~i~~lp~~ 640 (965)
.....|...+.++.... .+. -...+.|+.|-+..|.- .+..++. .|..+++|++|||++|..+.+||++
T Consensus 521 ~~~~~rr~s~~~~~~~~----~~~-~~~~~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEH----IAG-SSENPKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred chhheeEEEEeccchhh----ccC-CCCCCccceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence 44566777776665321 222 12344788888874320 1344544 3678999999999999889999999
Q ss_pred hhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCC
Q 002115 641 LCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLN 720 (965)
Q Consensus 641 i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 720 (965)
|++|.+|++|+++++. +..+|.++.+|++|.+|++..+.....+|..+..|++|++|.++.... ......+.++.+|+
T Consensus 591 I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~-~~~~~~l~el~~Le 668 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL-SNDKLLLKELENLE 668 (889)
T ss_pred HhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccc-ccchhhHHhhhccc
Confidence 9999999999999998 999999999999999999999877666666666799999999887652 22245567777788
Q ss_pred cCCcceeeccCCCCCHhHHHHhhccCCCCCC----ceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEE
Q 002115 721 LLRYCRIHGLGDVSDAGEARRAELEKKKNLS----NLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRI 796 (965)
Q Consensus 721 ~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~----~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L 796 (965)
+|+.+.+..... . ....+..+..|. .+.+.++ ........+..+.+|+.|.+
T Consensus 669 ~L~~ls~~~~s~-~-----~~e~l~~~~~L~~~~~~l~~~~~------------------~~~~~~~~~~~l~~L~~L~i 724 (889)
T KOG4658|consen 669 HLENLSITISSV-L-----LLEDLLGMTRLRSLLQSLSIEGC------------------SKRTLISSLGSLGNLEELSI 724 (889)
T ss_pred chhhheeecchh-H-----hHhhhhhhHHHHHHhHhhhhccc------------------ccceeecccccccCcceEEE
Confidence 777666644221 0 001112222222 2332222 11223456677889999999
Q ss_pred eeecCCCCCCChhhHh-----h-ccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCCCCceEeCccccCCCCCCCCccc
Q 002115 797 YQYRGRRNVVPKIWIT-----S-LTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSV 870 (965)
Q Consensus 797 ~~~~~~~~~~p~~~~~-----~-l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 870 (965)
.++.+.. ....|.. . ++++..+...+|.....+.+..-.|+|+.|.+..|..++.+-+....... .....
T Consensus 725 ~~~~~~e--~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~--l~~~i 800 (889)
T KOG4658|consen 725 LDCGISE--IVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLE--LKELI 800 (889)
T ss_pred EcCCCch--hhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhh--cccEE
Confidence 9998865 2212322 2 55677777777766666655667899999999999877654332221110 00012
Q ss_pred cCCcccccc-cccccccccccCcccccccccccCcccceEeeccCccCcCCCcCCCCCCCCCeEeEcCC
Q 002115 871 IAFPKLKQL-RFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPDRLLQKTTLQALTIGEC 938 (965)
Q Consensus 871 ~~f~~L~~L-~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c 938 (965)
..|+++..+ .+.+.+.+..+..... .++.|+.+.+..||++..+| .+.++.+.+|
T Consensus 801 ~~f~~~~~l~~~~~l~~l~~i~~~~l------~~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 801 LPFNKLEGLRMLCSLGGLPQLYWLPL------SFLKLEELIVEECPKLGKLP-------LLSTLTIVGC 856 (889)
T ss_pred ecccccccceeeecCCCCceeEeccc------CccchhheehhcCcccccCc-------cccccceecc
Confidence 356677777 4666555555443222 56679999999999887665 5666777776
No 22
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=2.7e-10 Score=128.63 Aligned_cols=316 Identities=15% Similarity=0.128 Sum_probs=186.1
Q ss_pred CCCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHH
Q 002115 175 IDESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIAR 254 (965)
Q Consensus 175 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 254 (965)
..++.++||++++++|...+...-. +.....+.|+|++|+|||++++.++++.......-..++|++....+...++.
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 3456799999999999999854321 22345678999999999999999998732222123456777777778889999
Q ss_pred HHHHHhcCCC--CCCCCHHHHHHHHHHHhC--CceEEEEEeCCCcch----hhchHhHHhhhcCCCCCcE--EEEeecch
Q 002115 255 AIIESLTGSA--SNFGEFQSLMQHIQECVE--GKKFLLVLDDLWNEV----YYKWEPFYKCLKNGLHESK--ILITTRKE 324 (965)
Q Consensus 255 ~i~~~l~~~~--~~~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~--ilvTtR~~ 324 (965)
.|++++.... ....+.+++...+.+.+. +++.+||||+++.-. .+.+..+...+.. ..+++ +|.++...
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCc
Confidence 9999997632 122345667777777764 567899999997632 1122223222222 12333 56665544
Q ss_pred HHHhhcC-------CcceEeCCCCChHHHHHHHHHHhccC--CCccchhHHHHHHHHHHHHcCCChHhHHHHHHhh--c-
Q 002115 325 IVARCMR-------STNVIYVNVLSEIECWSVFEQLAFFG--RSMEECEKLENMGRQIVRKCKGLPLAAKTIASLL--Q- 392 (965)
Q Consensus 325 ~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l--~- 392 (965)
.+..... ....+.+.+++.++..+++..++-.. ........++.+++......|..+.|+.++-... +
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3322211 13467899999999999998876321 1112233344444444444566777777664322 1
Q ss_pred --CC--CCHHHHHHHHhhhhhhhhhhhhhhhhHHHHhhcCCcHhHHHHHhHhcccCC--CceecHHHHHHH--HHhCCcc
Q 002115 393 --SR--NTEKEWQNILESEIWELEEVERGLLAPLLLSYNELPSKIKQCFTYCAIFPK--DYQIQKKELINL--WMAQGYL 464 (965)
Q Consensus 393 --~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~lk~cfl~~~~fp~--~~~i~~~~li~~--w~aeg~i 464 (965)
.. -+.+....+.+... .....-.+..||.+.|..+..++..-+ ...+...++... .+++.+-
T Consensus 264 ~~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred HcCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 11 14555555444320 122334678999988876665543221 123555555432 3332211
Q ss_pred ccCCCCcHHHHHHHHHHHHHhCCCcccccc--CCCCCeeEEEeC
Q 002115 465 SKKGTKEMEDIGEEYFNILASRSFFQDFRR--YGLGENYVCKMH 506 (965)
Q Consensus 465 ~~~~~~~~e~~~~~~l~~L~~~sl~~~~~~--~~~~~~~~~~~H 506 (965)
. ... .......|+.+|...+++..... +..|..+.++++
T Consensus 334 ~--~~~-~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~ 374 (394)
T PRK00411 334 Y--EPR-THTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLS 374 (394)
T ss_pred C--CcC-cHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEec
Confidence 0 011 12345669999999999986543 224555555554
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=1.4e-14 Score=130.88 Aligned_cols=145 Identities=25% Similarity=0.338 Sum_probs=113.5
Q ss_pred hcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhh
Q 002115 562 HVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETL 641 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i 641 (965)
++++..-|.++++.. .. .|..+..+.+|++|++. ++.++.+|.+|..|++||.|+++-|+ +..+|..|
T Consensus 31 ~~s~ITrLtLSHNKl---~~-vppnia~l~nlevln~~-------nnqie~lp~~issl~klr~lnvgmnr-l~~lprgf 98 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKL---TV-VPPNIAELKNLEVLNLS-------NNQIEELPTSISSLPKLRILNVGMNR-LNILPRGF 98 (264)
T ss_pred chhhhhhhhcccCce---ee-cCCcHHHhhhhhhhhcc-------cchhhhcChhhhhchhhhheecchhh-hhcCcccc
Confidence 666677777777753 23 44458889999999998 66678899999999999999999998 88899999
Q ss_pred hccCCCcEEeccCccccc-ccCccccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCC
Q 002115 642 CELYNLEHLDISYCRNLR-ELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLN 720 (965)
Q Consensus 642 ~~L~~L~~LdL~~~~~l~-~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 720 (965)
+.++-|+.|||.+|+.-+ .+|..|..|..|+-|++++| ....+|..++++++||.|.+..+.... .+..++.|..|+
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lr 176 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLR 176 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHH
Confidence 999999999999887332 58888888999999999988 567889999999999999888776544 233333333333
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.31 E-value=3.2e-14 Score=145.53 Aligned_cols=296 Identities=17% Similarity=0.165 Sum_probs=173.3
Q ss_pred CccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhH-HhhhhccCCCcEEEeCC
Q 002115 552 RHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEV-RTNIENLLHLKYLNLAH 630 (965)
Q Consensus 552 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~l-p~~i~~L~~Lr~L~L~~ 630 (965)
...+|.... ..-..+.+..|. +..+.|.+|+.++.||.|||+.|+| ..+ |..|..|..|-.|-+-+
T Consensus 58 L~eVP~~LP---~~tveirLdqN~---I~~iP~~aF~~l~~LRrLdLS~N~I-------s~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 58 LTEVPANLP---PETVEIRLDQNQ---ISSIPPGAFKTLHRLRRLDLSKNNI-------SFIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred cccCcccCC---CcceEEEeccCC---cccCChhhccchhhhceecccccch-------hhcChHhhhhhHhhhHHHhhc
Confidence 333454443 344556666655 6666778899999999999995544 444 77888888877666655
Q ss_pred -ccCccccch-hhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccc-cCCCcccccccCceEecCcc
Q 002115 631 -QREIEKLPE-TLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPV-GIGELIRLRIVKEFVVGGGY 707 (965)
Q Consensus 631 -~~~i~~lp~-~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~ 707 (965)
|+ |+.+|+ .|++|..||-|.+.-|..-......++.|++|..|.+..| ....++. .+..+.+++++.+..+....
T Consensus 125 ~Nk-I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~ic 202 (498)
T KOG4237|consen 125 NNK-ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFIC 202 (498)
T ss_pred CCc-hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcccc
Confidence 55 888986 6888999999999888843344556788899999988888 5666776 57788888888876655322
Q ss_pred CCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCC
Q 002115 708 DRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGP 787 (965)
Q Consensus 708 ~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 787 (965)
. .+++.+..- +... ...++.........+....+... ....+...+..
T Consensus 203 --d---CnL~wla~~--~a~~------------~ietsgarc~~p~rl~~~Ri~q~-------------~a~kf~c~~es 250 (498)
T KOG4237|consen 203 --D---CNLPWLADD--LAMN------------PIETSGARCVSPYRLYYKRINQE-------------DARKFLCSLES 250 (498)
T ss_pred --c---cccchhhhH--Hhhc------------hhhcccceecchHHHHHHHhccc-------------chhhhhhhHHh
Confidence 1 112211100 0000 00111111222222222211111 11111111111
Q ss_pred CCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCCCCceEeCccccCCCCCCC
Q 002115 788 PPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTD 866 (965)
Q Consensus 788 ~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 866 (965)
.+ ..+.-..+.... .|..-|..+++|+.|+|++|.+...-+. |.++..|+.|.|..+. ++.+.+.++
T Consensus 251 l~--s~~~~~d~~d~~--cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f------- 318 (498)
T KOG4237|consen 251 LP--SRLSSEDFPDSI--CPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMF------- 318 (498)
T ss_pred HH--HhhccccCcCCc--ChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhh-------
Confidence 10 111112222222 5656678899999999999987765554 8888888888887754 333333332
Q ss_pred CccccCCcccccccccccccccccCcccccccccccCcccceEeeccCcc
Q 002115 867 GSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPK 916 (965)
Q Consensus 867 ~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~ 916 (965)
.++..|+.|+|.++ .++...|..|..+.+|.+|++-.||.
T Consensus 319 ----~~ls~L~tL~L~~N------~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 319 ----QGLSGLKTLSLYDN------QITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ----hccccceeeeecCC------eeEEEecccccccceeeeeehccCcc
Confidence 25666777765553 24444455566677777777777665
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.28 E-value=3.9e-13 Score=147.61 Aligned_cols=118 Identities=16% Similarity=0.118 Sum_probs=54.3
Q ss_pred hcCceeEEEecccccccc-cccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchh
Q 002115 562 HVKRLRSLLVESYEYSWS-SEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPET 640 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~-~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~ 640 (965)
.+.+|+.|.+.++..... ...++..+...+.|+.|+++++.+......+..++..+..+++|++|++++|.+....+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 445566666655542110 0113333445555666666544432101122334445555566666666666532234444
Q ss_pred hhccCC---CcEEeccCccccc----ccCccccCC-CCccEeecCCC
Q 002115 641 LCELYN---LEHLDISYCRNLR----ELPQGIGKL-RKLMYLENDGT 679 (965)
Q Consensus 641 i~~L~~---L~~LdL~~~~~l~----~lP~~i~~L-~~L~~L~l~~~ 679 (965)
+..+.+ |++|++++|.... .++..+..+ ++|+.|++++|
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC
Confidence 444444 6666666655211 122233344 55566666555
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=2.5e-13 Score=139.12 Aligned_cols=274 Identities=18% Similarity=0.195 Sum_probs=186.3
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHh-hhh
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRT-NIE 618 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~-~i~ 618 (965)
.....+.+..|.+..+|...|..+++||.|++++|. +..+-|..|.++..|-.|-+-+ ++.|..+|+ .|+
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~---Is~I~p~AF~GL~~l~~Lvlyg------~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN---ISFIAPDAFKGLASLLSLVLYG------NNKITDLPKGAFG 137 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccc---hhhcChHhhhhhHhhhHHHhhc------CCchhhhhhhHhh
Confidence 577889999999999999999999999999999987 5666799999999988877763 466788886 488
Q ss_pred ccCCCcEEEeCCccCccccc-hhhhccCCCcEEeccCcccccccCc-cccCCCCccEeecCCCcccc------------c
Q 002115 619 NLLHLKYLNLAHQREIEKLP-ETLCELYNLEHLDISYCRNLRELPQ-GIGKLRKLMYLENDGTYSLR------------Y 684 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~LdL~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~------------~ 684 (965)
+|..|+.|.+.-|+ +..++ +.+..|++|..|.+..|. +..++. .+..+.+++++++..|..+. .
T Consensus 138 gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~ 215 (498)
T KOG4237|consen 138 GLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM 215 (498)
T ss_pred hHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhh
Confidence 99999999999999 66555 589999999999999998 888888 58889999999988774221 1
Q ss_pred ccccCCCcccccccCceEecCccCCCCCccccccCCcCC-cceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCC
Q 002115 685 LPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLR-YCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDG 763 (965)
Q Consensus 685 ~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~-~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~ 763 (965)
.|..++.....+-..+..+.........+. ..++.+. .+.- +..++. ......+..+++|+.|+|++|.++..
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~--c~~esl~s~~~~---~d~~d~-~cP~~cf~~L~~L~~lnlsnN~i~~i 289 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFL--CSLESLPSRLSS---EDFPDS-ICPAKCFKKLPNLRKLNLSNNKITRI 289 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhh--hhHHhHHHhhcc---ccCcCC-cChHHHHhhcccceEeccCCCccchh
Confidence 122222222222222222222111111111 1111111 0000 000000 01113478889999999999977654
Q ss_pred CcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcce
Q 002115 764 DEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEV 842 (965)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~ 842 (965)
.+ .++.....++.|.|..|.+.. +....|..+.+|+.|+|.+|+++...|. |..+.+|.+
T Consensus 290 ~~-----------------~aFe~~a~l~eL~L~~N~l~~--v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~ 350 (498)
T KOG4237|consen 290 ED-----------------GAFEGAAELQELYLTRNKLEF--VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST 350 (498)
T ss_pred hh-----------------hhhcchhhhhhhhcCcchHHH--HHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence 32 345556678888888887665 4435566788888888888887776665 777888888
Q ss_pred eeecCCC
Q 002115 843 LEIYGVQ 849 (965)
Q Consensus 843 L~L~~~~ 849 (965)
|.|-.++
T Consensus 351 l~l~~Np 357 (498)
T KOG4237|consen 351 LNLLSNP 357 (498)
T ss_pred eehccCc
Confidence 8876543
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.25 E-value=1.3e-09 Score=116.00 Aligned_cols=182 Identities=18% Similarity=0.139 Sum_probs=116.5
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH----HH
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQ----EC 280 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~----~~ 280 (965)
..++.|+|.+|+||||+++.+++.... ..+ ..+|+ +....+..+++..|+..++..... .+.......+. ..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 458999999999999999999987331 111 12343 333467788899999888665332 22222333333 32
Q ss_pred -hCCceEEEEEeCCCcchhhchHhHHhhhcC---CCCCcEEEEeecchHHHhhcC----------CcceEeCCCCChHHH
Q 002115 281 -VEGKKFLLVLDDLWNEVYYKWEPFYKCLKN---GLHESKILITTRKEIVARCMR----------STNVIYVNVLSEIEC 346 (965)
Q Consensus 281 -l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~ilvTtR~~~v~~~~~----------~~~~~~l~~L~~~~~ 346 (965)
..+++.+||+||+|......++.+...... ......|++|..... ...+. ....+.+.+++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~-~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEF-RETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHH-HHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 267889999999998665566666543221 122234566655432 21111 134678999999999
Q ss_pred HHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhh
Q 002115 347 WSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLL 391 (965)
Q Consensus 347 ~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l 391 (965)
.+++...+..........-..+..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999988764322111111234678899999999999999998876
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.20 E-value=8.6e-09 Score=115.12 Aligned_cols=300 Identities=13% Similarity=0.102 Sum_probs=173.8
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccc------cceEEEEcCCCCCH
Q 002115 176 DESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNF------EKRIWVCVSEPFDE 249 (965)
Q Consensus 176 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~ 249 (965)
.++.++||++++++|..++..... +.....+.|+|++|+|||++++.++++ ..... -..+||++....+.
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~~~ 88 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILDTL 88 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCCCH
Confidence 345799999999999999864321 224457899999999999999999986 22111 14568888777788
Q ss_pred HHHHHHHHHHhc---CCCC-CCCCHHHHHHHHHHHh--CCceEEEEEeCCCcchhhchHhHHhhhc-----CCC--CCcE
Q 002115 250 FRIARAIIESLT---GSAS-NFGEFQSLMQHIQECV--EGKKFLLVLDDLWNEVYYKWEPFYKCLK-----NGL--HESK 316 (965)
Q Consensus 250 ~~~~~~i~~~l~---~~~~-~~~~~~~l~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~-----~~~--~gs~ 316 (965)
..++..|++++. ...+ ...+..++...+.+.+ .+++++||||+++.-. .....+...+. ... ....
T Consensus 89 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~-~~~~~~L~~l~~~~~~~~~~~~~v~ 167 (365)
T TIGR02928 89 YQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLV-GDDDDLLYQLSRARSNGDLDNAKVG 167 (365)
T ss_pred HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhc-cCCcHHHHhHhccccccCCCCCeEE
Confidence 899999999984 2211 1224455555566655 3668999999997642 11122221111 111 2234
Q ss_pred EEEeecchHHHhhcC-------CcceEeCCCCChHHHHHHHHHHhccC-CCccchhHHHHHHHHHHHHcCCChHhHHHHH
Q 002115 317 ILITTRKEIVARCMR-------STNVIYVNVLSEIECWSVFEQLAFFG-RSMEECEKLENMGRQIVRKCKGLPLAAKTIA 388 (965)
Q Consensus 317 ilvTtR~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 388 (965)
+|.+|........+. ....+.+.+++.++..+++..++-.. ......++..+...+++..+.|.|-.+..+.
T Consensus 168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 445554332211111 12468899999999999999886311 1111223333445567777788885443322
Q ss_pred Hh-h--c--C-C--CCHHHHHHHHhhhhhhhhhhhhhhhhHHHHhhcCCcHhHHHHHhHhccc--CCCceecHHHHHHHH
Q 002115 389 SL-L--Q--S-R--NTEKEWQNILESEIWELEEVERGLLAPLLLSYNELPSKIKQCFTYCAIF--PKDYQIQKKELINLW 458 (965)
Q Consensus 389 ~~-l--~--~-~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~lk~cfl~~~~f--p~~~~i~~~~li~~w 458 (965)
.. . . . . -+.+....+.+... .....-++..||.+.|..+..++.. ..+..+...++...+
T Consensus 248 ~~a~~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y 317 (365)
T TIGR02928 248 RVAGEIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVY 317 (365)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 21 1 1 1 1 23444443333210 1223346678999888666655422 133446666666532
Q ss_pred --HhCCccccCCCCcHHHHHHHHHHHHHhCCCccccc
Q 002115 459 --MAQGYLSKKGTKEMEDIGEEYFNILASRSFFQDFR 493 (965)
Q Consensus 459 --~aeg~i~~~~~~~~e~~~~~~l~~L~~~sl~~~~~ 493 (965)
+++.+ .. ....+.....++.+|...|++....
T Consensus 318 ~~~~~~~-~~--~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 318 KEVCEDI-GV--DPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHHhc-CC--CCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 12211 11 1123466778899999999998654
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.20 E-value=8.4e-12 Score=137.04 Aligned_cols=276 Identities=21% Similarity=0.151 Sum_probs=156.6
Q ss_pred hHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCcc-------ccchhhhccCCCcEEeccCcc
Q 002115 584 PQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIE-------KLPETLCELYNLEHLDISYCR 656 (965)
Q Consensus 584 ~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~-------~lp~~i~~L~~L~~LdL~~~~ 656 (965)
...|..+..|++|+++++.++ ......++..+...+.|++|+++++. +. .++..+.++++|+.|++++|.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~--~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLG--EEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HHHHHHHhhccEEeecCCCCc--HHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 344666677888888866654 33445566667777778888887776 33 234456677788888888877
Q ss_pred cccccCccccCCCC---ccEeecCCCcccc----cccccCCCc-ccccccCceEecCccCCC-CCccccccCCcCCccee
Q 002115 657 NLRELPQGIGKLRK---LMYLENDGTYSLR----YLPVGIGEL-IRLRIVKEFVVGGGYDRA-CSLGSLKKLNLLRYCRI 727 (965)
Q Consensus 657 ~l~~lP~~i~~L~~---L~~L~l~~~~~~~----~~p~~i~~l-~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~~l~~ 727 (965)
.....+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++..+....... .....+..++.|+.+.+
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l 172 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL 172 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEEC
Confidence 43344444444444 8888887774331 222344555 677777777666542111 11122333444444444
Q ss_pred eccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCC
Q 002115 728 HGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVP 807 (965)
Q Consensus 728 ~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p 807 (965)
....-...........+...++|+.|++++|.+.+. ....+...+..+++|+.|++++|......+
T Consensus 173 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~-------------~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~- 238 (319)
T cd00116 173 ANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE-------------GASALAETLASLKSLEVLNLGDNNLTDAGA- 238 (319)
T ss_pred cCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH-------------HHHHHHHHhcccCCCCEEecCCCcCchHHH-
Confidence 432211111122333455567888888888865321 223445566677888888888887653111
Q ss_pred hhhHh-h----ccCCcEEEEecCCCCC----CCC-CCCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCC-ccc
Q 002115 808 KIWIT-S----LTNLRVLSLFECRNCE----HLP-PLGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAF-PKL 876 (965)
Q Consensus 808 ~~~~~-~----l~~L~~L~L~~~~~~~----~lp-~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f-~~L 876 (965)
..+. . .+.|++|++++|.+.. .+. .+..+++|++|++++|. +...+.... ......+ +.|
T Consensus 239 -~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~-------~~~~~~~~~~~ 309 (319)
T cd00116 239 -AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLL-------AESLLEPGNEL 309 (319)
T ss_pred -HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHH-------HHHHhhcCCch
Confidence 1222 2 3788899998887652 111 15566888888888754 111110100 0112355 788
Q ss_pred ccccccccc
Q 002115 877 KQLRFDEMD 885 (965)
Q Consensus 877 ~~L~l~~~~ 885 (965)
+.|++.+.+
T Consensus 310 ~~~~~~~~~ 318 (319)
T cd00116 310 ESLWVKDDS 318 (319)
T ss_pred hhcccCCCC
Confidence 888877654
No 30
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.14 E-value=7.4e-09 Score=117.75 Aligned_cols=297 Identities=17% Similarity=0.205 Sum_probs=189.3
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCC-CCCHHHHHHH
Q 002115 177 ESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSE-PFDEFRIARA 255 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~ 255 (965)
+...|-|.. +++.|.. ..+.+.+.|.-++|.|||||+...... . ..=..++|.++++ +.++..+..-
T Consensus 18 ~~~~v~R~r----L~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~~--~-~~~~~v~Wlslde~dndp~rF~~y 85 (894)
T COG2909 18 PDNYVVRPR----LLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWREL--A-ADGAAVAWLSLDESDNDPARFLSY 85 (894)
T ss_pred cccccccHH----HHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHHh--c-CcccceeEeecCCccCCHHHHHHH
Confidence 445555554 4455532 237889999999999999999998752 1 2234688999864 5678888888
Q ss_pred HHHHhcCCCCC-------------CCCHHHHHHHHHHHhC--CceEEEEEeCCCcchhhchHh-HHhhhcCCCCCcEEEE
Q 002115 256 IIESLTGSASN-------------FGEFQSLMQHIQECVE--GKKFLLVLDDLWNEVYYKWEP-FYKCLKNGLHESKILI 319 (965)
Q Consensus 256 i~~~l~~~~~~-------------~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~ilv 319 (965)
++..+....++ ..++..+...+...+. .++..+||||..-........ +...+.....+-.+||
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv 165 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVV 165 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEE
Confidence 88888743222 2234445555544443 568999999986533333334 4444556677889999
Q ss_pred eecchH---HHhhcCCcceEeCC----CCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhhc
Q 002115 320 TTRKEI---VARCMRSTNVIYVN----VLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLLQ 392 (965)
Q Consensus 320 TtR~~~---v~~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~ 392 (965)
|||+.. ++..--.....+++ .++.+|+.++|....... -+ +.-.+.+.+..+|-+-|+..++=.++
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~---Ld----~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP---LD----AADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC---CC----hHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 999874 22211112333433 589999999998864211 11 22367899999999999999998888
Q ss_pred CCCCHHHHHHHHhhhhhhhhhhhhhhhhH-HHHhhcCCcHhHHHHHhHhcccCCCceecHHHHHHHHHhCCccccCCCCc
Q 002115 393 SRNTEKEWQNILESEIWELEEVERGLLAP-LLLSYNELPSKIKQCFTYCAIFPKDYQIQKKELINLWMAQGYLSKKGTKE 471 (965)
Q Consensus 393 ~~~~~~~w~~~l~~~~~~~~~~~~~i~~~-l~~sy~~L~~~lk~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~ 471 (965)
.+.+.+.-...+.- ...-+..- ..=-++.||++++..++-||+++.= . +.|+..-..
T Consensus 239 ~~~~~~q~~~~LsG-------~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~Ltg----------- 296 (894)
T COG2909 239 NNTSAEQSLRGLSG-------AASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNALTG----------- 296 (894)
T ss_pred CCCcHHHHhhhccc-------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHHhc-----------
Confidence 54444433332221 11111111 1224678999999999999998651 1 233332211
Q ss_pred HHHHHHHHHHHHHhCCCccccccCCCCCeeEEEeChhHHHHHHHhhc
Q 002115 472 MEDIGEEYFNILASRSFFQDFRRYGLGENYVCKMHDIVHDFAQFLCR 518 (965)
Q Consensus 472 ~e~~~~~~l~~L~~~sl~~~~~~~~~~~~~~~~~Hdlv~~~a~~~~~ 518 (965)
++.+...+++|.+++||-..- ++....|+.|.+..+|.+.--.
T Consensus 297 -~~ng~amLe~L~~~gLFl~~L---dd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 297 -EENGQAMLEELERRGLFLQRL---DDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred -CCcHHHHHHHHHhCCCceeee---cCCCceeehhHHHHHHHHhhhc
Confidence 244777899999999875422 2233579999999999876443
No 31
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.13 E-value=5.8e-10 Score=116.31 Aligned_cols=194 Identities=20% Similarity=0.138 Sum_probs=100.8
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHH---
Q 002115 180 IFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAI--- 256 (965)
Q Consensus 180 ~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i--- 256 (965)
|+||++++++|.+++... ..+.+.|+|+.|+|||+|++++.+.. +..-...+|+...+...... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~--~~~~~~~~y~~~~~~~~~~~-~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINEL--KEKGYKVVYIDFLEESNESS-LRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHC--T--EECCCHHCCTTBSHHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHh--hhcCCcEEEEecccchhhhH-HHHHHHH
Confidence 799999999999988643 34589999999999999999999863 22212445555444432222 2222
Q ss_pred -----------HHHhcCCCC------CCCCHHHHHHHHHHHh--CCceEEEEEeCCCcch------hhchHhHHhhhcC-
Q 002115 257 -----------IESLTGSAS------NFGEFQSLMQHIQECV--EGKKFLLVLDDLWNEV------YYKWEPFYKCLKN- 310 (965)
Q Consensus 257 -----------~~~l~~~~~------~~~~~~~l~~~l~~~l--~~kr~LlVlDdv~~~~------~~~~~~l~~~l~~- 310 (965)
...+..... ...........+.+.+ .+++.+||+||+.... ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 111111110 1111122222222222 2456999999996543 1112223333333
Q ss_pred --CCCCcEEEEeecchHHHhh--------cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCC
Q 002115 311 --GLHESKILITTRKEIVARC--------MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGL 380 (965)
Q Consensus 311 --~~~gs~ilvTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl 380 (965)
..+.+.|+++|. ..+... .+....+.+++|+.+++++++...+-.. . .. +.-++..++|+..+||.
T Consensus 152 ~~~~~~~~v~~~S~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 152 LSQQNVSIVITGSS-DSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp ---TTEEEEEEESS-HHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred cccCCceEEEECCc-hHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCC
Confidence 333444444444 333322 2234469999999999999999865332 1 11 12234468999999999
Q ss_pred hHhHHH
Q 002115 381 PLAAKT 386 (965)
Q Consensus 381 Plai~~ 386 (965)
|..|..
T Consensus 228 P~~l~~ 233 (234)
T PF01637_consen 228 PRYLQE 233 (234)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988764
No 32
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.09 E-value=7.2e-10 Score=120.85 Aligned_cols=277 Identities=17% Similarity=0.146 Sum_probs=146.1
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHH
Q 002115 177 ESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAI 256 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 256 (965)
-.+|+|+++.++.+..++..... .......+.|+|++|+||||||+.+++. ....+ .++..+. ......+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~~-~~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGPA-LEKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEeccc-ccChHHHHHH
Confidence 35799999999999887754221 1234567889999999999999999987 32222 1222211 1111222233
Q ss_pred HHHhcCCCC-CCCCHH----HHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchHHHhhcC
Q 002115 257 IESLTGSAS-NFGEFQ----SLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEIVARCMR 331 (965)
Q Consensus 257 ~~~l~~~~~-~~~~~~----~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 331 (965)
+..+..... -.++++ ...+.+...+.+.+..+|+|+..+.. .+...+ .+.+-|..|++...+...+.
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l---~~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDL---PPFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecC---CCceEEeecCCcccCCHHHH
Confidence 332221100 000000 11122233333334444444432210 000011 12345666777544333221
Q ss_pred --CcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhhcCCCCHHHHHHHHhhhhh
Q 002115 332 --STNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLLQSRNTEKEWQNILESEIW 409 (965)
Q Consensus 332 --~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~~~~ 409 (965)
....+++++++.++..+++.+.+....... -++....|++.|+|.|-.+..+...+ ..|.......
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~----~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~~-- 236 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGVEI----DEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGDG-- 236 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCC--
Confidence 134689999999999999998875433221 23457889999999996555444332 1222211100
Q ss_pred hhh-hhhhhhhhHHHHhhcCCcHhHHHHHh-HhcccCCCceecHHHHHHHHHhCCccccCCCCcHHHHHHHHHH-HHHhC
Q 002115 410 ELE-EVERGLLAPLLLSYNELPSKIKQCFT-YCAIFPKDYQIQKKELINLWMAQGYLSKKGTKEMEDIGEEYFN-ILASR 486 (965)
Q Consensus 410 ~~~-~~~~~i~~~l~~sy~~L~~~lk~cfl-~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~~~l~-~L~~~ 486 (965)
... ..-......+...|..|++..+..+. ....|+.+ .+..+.+-... | .+ .+.++..++ .|++.
T Consensus 237 ~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g----~~----~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 237 VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G----EE----RDTIEDVYEPYLIQQ 304 (328)
T ss_pred CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C----CC----cchHHHHhhHHHHHc
Confidence 000 01122334456677889888777775 66677765 56666654332 1 11 123444455 78999
Q ss_pred CCcccc
Q 002115 487 SFFQDF 492 (965)
Q Consensus 487 sl~~~~ 492 (965)
+|++..
T Consensus 305 ~li~~~ 310 (328)
T PRK00080 305 GFIQRT 310 (328)
T ss_pred CCcccC
Confidence 999743
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.07 E-value=4e-09 Score=114.46 Aligned_cols=276 Identities=18% Similarity=0.136 Sum_probs=145.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.+|+|+++.++.+..++..... .......+.++|++|+|||+||+.+.+. ....| ..+..+....... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCchh-HHHHH
Confidence 3689999999999988864322 1234556889999999999999999986 32222 1222211111111 22222
Q ss_pred HHhcCCCC-CCCCH----HHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchHHHhhcC-
Q 002115 258 ESLTGSAS-NFGEF----QSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEIVARCMR- 331 (965)
Q Consensus 258 ~~l~~~~~-~~~~~----~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~- 331 (965)
..+..... -.+++ ......+...+.+.+..+|+|+..+.. .| ...+ .+.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~~---~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLDL---PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--ce---eecC---CCeEEEEecCCccccCHHHHh
Confidence 22221100 00000 112233444444445555555543321 11 1111 12455666777654433211
Q ss_pred -CcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhhcCCCCHHHHHHHHhhhhhh
Q 002115 332 -STNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLLQSRNTEKEWQNILESEIWE 410 (965)
Q Consensus 332 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~~~~~ 410 (965)
....+++++++.++..+++.+.+..... .. -.+....|++.|+|.|-.+..++..+ |..........
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~---~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV-EI---EPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC-Cc---CHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC
Confidence 1346789999999999999987743222 11 13456789999999997665554432 11100000000
Q ss_pred hh-hhhhhhhhHHHHhhcCCcHhHHHHHh-HhcccCCCceecHHHHHHHHHhCCccccCCCCcHHHHHHHHHH-HHHhCC
Q 002115 411 LE-EVERGLLAPLLLSYNELPSKIKQCFT-YCAIFPKDYQIQKKELINLWMAQGYLSKKGTKEMEDIGEEYFN-ILASRS 487 (965)
Q Consensus 411 ~~-~~~~~i~~~l~~sy~~L~~~lk~cfl-~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~~~l~-~L~~~s 487 (965)
.. ..-......+...|..++++.+..+. ....++.+ .+..+.+-... | .....++..++ .|++++
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~~e~~Li~~~ 284 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDVYEPYLLQIG 284 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHhhhHHHHHcC
Confidence 00 00011222356678889998877666 44666543 45544433322 1 11234566677 699999
Q ss_pred Ccccc
Q 002115 488 FFQDF 492 (965)
Q Consensus 488 l~~~~ 492 (965)
|+...
T Consensus 285 li~~~ 289 (305)
T TIGR00635 285 FLQRT 289 (305)
T ss_pred CcccC
Confidence 99643
No 34
>PF05729 NACHT: NACHT domain
Probab=99.01 E-value=2.4e-09 Score=104.86 Aligned_cols=143 Identities=19% Similarity=0.229 Sum_probs=90.3
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccc----ccceEEEEcCCCCCHH---HHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRN----FEKRIWVCVSEPFDEF---RIARAIIESLTGSASNFGEFQSLMQHIQ 278 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~l~~~l~ 278 (965)
+++.|+|.+|+||||++++++.+-..... +...+|+......... .+...|..+..... ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 48999999999999999999976322222 3456677665443332 34444444433221 11111 121
Q ss_pred H-HhCCceEEEEEeCCCcchh--h-----chHhHHhhhcCC--CCCcEEEEeecchHH---HhhcCCcceEeCCCCChHH
Q 002115 279 E-CVEGKKFLLVLDDLWNEVY--Y-----KWEPFYKCLKNG--LHESKILITTRKEIV---ARCMRSTNVIYVNVLSEIE 345 (965)
Q Consensus 279 ~-~l~~kr~LlVlDdv~~~~~--~-----~~~~l~~~l~~~--~~gs~ilvTtR~~~v---~~~~~~~~~~~l~~L~~~~ 345 (965)
. ....++++||+|++++-.. . .+..+...+... .++.+++||||.... .........+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 1 2257899999999965321 1 233333333333 578999999998765 3334455689999999999
Q ss_pred HHHHHHHHh
Q 002115 346 CWSVFEQLA 354 (965)
Q Consensus 346 ~~~lf~~~~ 354 (965)
..+++++..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999997754
No 35
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.90 E-value=4e-07 Score=104.58 Aligned_cols=213 Identities=9% Similarity=0.037 Sum_probs=127.7
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccc---ccccc--ceEEEEcCCCCCHHH
Q 002115 177 ESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGV---KRNFE--KRIWVCVSEPFDEFR 251 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~ 251 (965)
+..+.||++|+++|...|...-. +.....++.|+|.+|.|||++++.|.+...- +.... .+++|.+..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 45788999999999998865432 1223468899999999999999999875211 11122 356777777778889
Q ss_pred HHHHHHHHhcCCCCC-CCCHHHHHHHHHHHh-C--CceEEEEEeCCCcchhhchHhHHhhhcC-CCCCcEEEE--eecch
Q 002115 252 IARAIIESLTGSASN-FGEFQSLMQHIQECV-E--GKKFLLVLDDLWNEVYYKWEPFYKCLKN-GLHESKILI--TTRKE 324 (965)
Q Consensus 252 ~~~~i~~~l~~~~~~-~~~~~~l~~~l~~~l-~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilv--TtR~~ 324 (965)
++..|.+++.+..+. .....+....+...+ . +...+||||+++.-....=+.|...+.. ...+++|+| +|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 999999998554322 222333444444443 2 2346899999965321111223322221 224556555 33221
Q ss_pred --------HHHhhcCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhh
Q 002115 325 --------IVARCMRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLL 391 (965)
Q Consensus 325 --------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l 391 (965)
.+...++ ...+...|++.++-.+++..++-.....-....++-+|+.++...|-.-.|+.++-.+.
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 1212222 23467799999999999999875432223344555556655555555666666655444
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.83 E-value=1.9e-10 Score=123.70 Aligned_cols=178 Identities=27% Similarity=0.372 Sum_probs=117.8
Q ss_pred chHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccC
Q 002115 583 LPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELP 662 (965)
Q Consensus 583 l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP 662 (965)
+|..+..|-.|..|.|. .+.+..+|..+++|..|.||+|+.|. +..+|..++.|+ |+.|-+++|+ ++.+|
T Consensus 90 lp~~~~~f~~Le~liLy-------~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNk-l~~lp 159 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILY-------HNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNK-LTSLP 159 (722)
T ss_pred CchHHHHHHHHHHHHHH-------hccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCc-cccCC
Confidence 55556777777777777 55667778888888888888888888 778888777765 7888888777 77888
Q ss_pred ccccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHh
Q 002115 663 QGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRA 742 (965)
Q Consensus 663 ~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~ 742 (965)
.+++.+..|.+|+.+.| .+..+|..++++.+|+.|.+..+.... ++ .
T Consensus 160 ~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~-------------------------lp-------~ 206 (722)
T KOG0532|consen 160 EEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLED-------------------------LP-------E 206 (722)
T ss_pred cccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhh-------------------------CC-------H
Confidence 88887788888888777 556777777777777777665444322 11 1
Q ss_pred hccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHh---hccCCcE
Q 002115 743 ELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWIT---SLTNLRV 819 (965)
Q Consensus 743 ~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~---~l~~L~~ 819 (965)
.+.. -.|..|++++|++. .++-.+..+..|+.|-|.+|.... +| .-+. ...=.++
T Consensus 207 El~~-LpLi~lDfScNkis------------------~iPv~fr~m~~Lq~l~LenNPLqS--PP-AqIC~kGkVHIFKy 264 (722)
T KOG0532|consen 207 ELCS-LPLIRLDFSCNKIS------------------YLPVDFRKMRHLQVLQLENNPLQS--PP-AQICEKGKVHIFKY 264 (722)
T ss_pred HHhC-CceeeeecccCcee------------------ecchhhhhhhhheeeeeccCCCCC--Ch-HHHHhccceeeeee
Confidence 1121 14666777777432 234455666777777777777765 55 3333 1222345
Q ss_pred EEEecC
Q 002115 820 LSLFEC 825 (965)
Q Consensus 820 L~L~~~ 825 (965)
|+..-|
T Consensus 265 L~~qA~ 270 (722)
T KOG0532|consen 265 LSTQAC 270 (722)
T ss_pred ecchhc
Confidence 555555
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=98.73 E-value=3e-07 Score=94.36 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=93.9
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCce
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKK 285 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 285 (965)
+.+.|+|.+|+|||+|++.+++. .......+.|+.++.. ......+ .+.+. +.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~~~---------------------~~~~~-~~ 92 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSPAV---------------------LENLE-QQ 92 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhHHH---------------------Hhhcc-cC
Confidence 57899999999999999999987 3333345567766421 0001111 11111 23
Q ss_pred EEEEEeCCCcch-hhchHh-HHhhhcCC-CCCcEEE-Eeecc---------hHHHhhcCCcceEeCCCCChHHHHHHHHH
Q 002115 286 FLLVLDDLWNEV-YYKWEP-FYKCLKNG-LHESKIL-ITTRK---------EIVARCMRSTNVIYVNVLSEIECWSVFEQ 352 (965)
Q Consensus 286 ~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~il-vTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 352 (965)
-+||+||+|... ...|+. +...+... ..|+.+| +|+.. ..+...+.....++++++++++.++++++
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 489999998732 245654 33333322 2355554 45543 35555566677999999999999999999
Q ss_pred HhccCCCccchhHHHHHHHHHHHHcCCChHhHHHH
Q 002115 353 LAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 353 ~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 387 (965)
.++...-. . -+++..-|++.+.|..-++..+
T Consensus 173 ~a~~~~l~-l---~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 173 NAYQRGIE-L---SDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHcCCC-C---CHHHHHHHHHhccCCHHHHHHH
Confidence 88643321 1 1345677888888766555443
No 38
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.67 E-value=5e-07 Score=101.64 Aligned_cols=178 Identities=19% Similarity=0.187 Sum_probs=105.9
Q ss_pred CccccchHHHHH---HHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHH
Q 002115 178 SEIFGREEEKNE---LVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIAR 254 (965)
Q Consensus 178 ~~~vGr~~~~~~---i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 254 (965)
.+++|++..+.. +..++.. .....+.++|++|+||||+|+.+++. ....| +.++.......-.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHH
Confidence 358888877555 6666632 24457888999999999999999886 33332 22222111111122
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHH-hCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEE--eecchH--HH-h
Q 002115 255 AIIESLTGSASNFGEFQSLMQHIQEC-VEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILI--TTRKEI--VA-R 328 (965)
Q Consensus 255 ~i~~~l~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~--v~-~ 328 (965)
.+++. .... ..+++.+|++|+++.......+.+...+.. |..++| ||.+.. +. .
T Consensus 79 ~ii~~-----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 EVIEE-----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHHH-----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 22221 1111 246789999999987655555566655543 444444 344332 11 1
Q ss_pred hcCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHH
Q 002115 329 CMRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIAS 389 (965)
Q Consensus 329 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~ 389 (965)
.......+.+.+++.++.+.++.+.+....... ..-.++..+.|++.|+|.|..+..+..
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 122347899999999999999988653211100 011234567889999999876654443
No 39
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.66 E-value=1.3e-07 Score=98.95 Aligned_cols=172 Identities=20% Similarity=0.177 Sum_probs=102.7
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHH
Q 002115 176 DESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARA 255 (965)
Q Consensus 176 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 255 (965)
.+.+++|-...+.++++ .+.+.-..+||++|+||||||+.+... ....| ..+|-..+-.+=++.
T Consensus 28 GQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvkdlr~ 91 (436)
T COG2256 28 GQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVKDLRE 91 (436)
T ss_pred ChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHHHHHH
Confidence 34456666666665554 336667889999999999999999986 44444 333333322222333
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEE--eecchH--H-Hhhc
Q 002115 256 IIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILI--TTRKEI--V-ARCM 330 (965)
Q Consensus 256 i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~--v-~~~~ 330 (965)
+++.. -+....++|.+|++|.|.+-+..+-+. .||.-..|.-|+| ||-++. + ....
T Consensus 92 i~e~a----------------~~~~~~gr~tiLflDEIHRfnK~QQD~---lLp~vE~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 92 IIEEA----------------RKNRLLGRRTILFLDEIHRFNKAQQDA---LLPHVENGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred HHHHH----------------HHHHhcCCceEEEEehhhhcChhhhhh---hhhhhcCCeEEEEeccCCCCCeeecHHHh
Confidence 33221 122235899999999997754332233 3444456667776 565543 2 2223
Q ss_pred CCcceEeCCCCChHHHHHHHHHHhccCCCccc--hh-HHHHHHHHHHHHcCCChH
Q 002115 331 RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEE--CE-KLENMGRQIVRKCKGLPL 382 (965)
Q Consensus 331 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~--~~-~l~~~~~~i~~~c~GlPl 382 (965)
....++.+++|+.++-.+++.+.+......-. .. --++.-.-++..++|---
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 45789999999999999999884322221111 01 113345667777777543
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=9.2e-09 Score=107.70 Aligned_cols=236 Identities=18% Similarity=0.130 Sum_probs=140.5
Q ss_pred eEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccch--hhhccCCCcEEeccCccccc--ccCccccCCCC
Q 002115 595 ALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPE--TLCELYNLEHLDISYCRNLR--ELPQGIGKLRK 670 (965)
Q Consensus 595 ~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~--~i~~L~~L~~LdL~~~~~l~--~lP~~i~~L~~ 670 (965)
++.+++-.+. ..+++.+...-.++.+||...|+++. +...+. ....|++++.|||++|-... .+-.-+..|++
T Consensus 97 ~~si~nK~vE--~iGfDki~akQsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~ 173 (505)
T KOG3207|consen 97 VLSISNKQVE--FIGFDKIAAKQSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPS 173 (505)
T ss_pred HhhhcCceeE--EecHHHHHHHhhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhccc
Confidence 3444433333 33445666666788899999999988 777773 67788889999998876222 22223456777
Q ss_pred ccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCC
Q 002115 671 LMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNL 750 (965)
Q Consensus 671 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L 750 (965)
|+.|+++.|... . | +++. . -..+++|
T Consensus 174 Le~LNls~Nrl~-~-~--~~s~--------------------~------------------------------~~~l~~l 199 (505)
T KOG3207|consen 174 LENLNLSSNRLS-N-F--ISSN--------------------T------------------------------TLLLSHL 199 (505)
T ss_pred chhccccccccc-C-C--cccc--------------------c------------------------------hhhhhhh
Confidence 777777776211 0 0 0000 0 0023466
Q ss_pred CceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCC-
Q 002115 751 SNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCE- 829 (965)
Q Consensus 751 ~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~- 829 (965)
+.|.|+.|+++. ..+...+..+|+|+.|.+.+|.... .-......+..|+.|+|++|.+..
T Consensus 200 K~L~l~~CGls~----------------k~V~~~~~~fPsl~~L~L~~N~~~~--~~~~~~~i~~~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 200 KQLVLNSCGLSW----------------KDVQWILLTFPSLEVLYLEANEIIL--IKATSTKILQTLQELDLSNNNLIDF 261 (505)
T ss_pred heEEeccCCCCH----------------HHHHHHHHhCCcHHHhhhhcccccc--eecchhhhhhHHhhccccCCccccc
Confidence 777777775532 2344455567888888888874221 110223457788888998887654
Q ss_pred -CCCCCCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccccccccccccccccCcccccccccccCcccce
Q 002115 830 -HLPPLGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSS 908 (965)
Q Consensus 830 -~lp~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~ 908 (965)
..+..+.||.|..|.++.|. +..+..--.+ .......||+|+.|.+..++ ..+|..- ..+..+++|+.
T Consensus 262 ~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~-----s~~kt~~f~kL~~L~i~~N~-I~~w~sl----~~l~~l~nlk~ 330 (505)
T KOG3207|consen 262 DQGYKVGTLPGLNQLNLSSTG-IASIAEPDVE-----SLDKTHTFPKLEYLNISENN-IRDWRSL----NHLRTLENLKH 330 (505)
T ss_pred ccccccccccchhhhhccccC-cchhcCCCcc-----chhhhcccccceeeecccCc-ccccccc----chhhccchhhh
Confidence 34558888888888887755 2222110000 00112468999999887765 5555422 23446778888
Q ss_pred EeeccCcc
Q 002115 909 LSIRRCPK 916 (965)
Q Consensus 909 L~L~~c~~ 916 (965)
|.+-.|+.
T Consensus 331 l~~~~n~l 338 (505)
T KOG3207|consen 331 LRITLNYL 338 (505)
T ss_pred hhcccccc
Confidence 88877764
No 41
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.63 E-value=1e-07 Score=88.97 Aligned_cols=116 Identities=20% Similarity=0.186 Sum_probs=81.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcccccccc-----ccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRN-----FEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQ 278 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~ 278 (965)
+.+++.|+|.+|+|||++++.+.++ .... -..++|+.+....+...+...|+.+++.......+..++.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 3468999999999999999999986 2221 23566999988889999999999999887665566777778888
Q ss_pred HHhCCc-eEEEEEeCCCcc-hhhchHhHHhhhcCCCCCcEEEEeecc
Q 002115 279 ECVEGK-KFLLVLDDLWNE-VYYKWEPFYKCLKNGLHESKILITTRK 323 (965)
Q Consensus 279 ~~l~~k-r~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~ 323 (965)
+.+... ..+||+|++..- ....++.+.... + ..+.+||+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 877644 469999999764 333344443333 3 566778887765
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.60 E-value=1.2e-08 Score=103.96 Aligned_cols=91 Identities=18% Similarity=0.205 Sum_probs=45.7
Q ss_pred hhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCcc---Cccccch-------hhhccCCCcEEeccCcc
Q 002115 587 FDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQR---EIEKLPE-------TLCELYNLEHLDISYCR 656 (965)
Q Consensus 587 ~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~---~i~~lp~-------~i~~L~~L~~LdL~~~~ 656 (965)
...+..+..|+|++|.+. ......+.+.+.+.++|+.-+++.-- ...++|+ .+-+.++|++||||.|-
T Consensus 26 ~~~~~s~~~l~lsgnt~G--~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFG--TEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred hcccCceEEEeccCCchh--HHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 344555666666654442 11122344445555566666655421 1123333 23345567777777665
Q ss_pred cccccCcc----ccCCCCccEeecCCC
Q 002115 657 NLRELPQG----IGKLRKLMYLENDGT 679 (965)
Q Consensus 657 ~l~~lP~~----i~~L~~L~~L~l~~~ 679 (965)
+-...|.. +..+..|+||+|.+|
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcC
Confidence 33333333 345666777777666
No 43
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.59 E-value=4.6e-07 Score=88.71 Aligned_cols=182 Identities=21% Similarity=0.223 Sum_probs=97.2
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHH
Q 002115 177 ESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAI 256 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 256 (965)
-.+|||.+.-+..+.-++..... .++.+.-+.+||++|+||||||+-+.+. ....|. +++.+.--...
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~i~k~~------ 90 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPAIEKAG------ 90 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC--SCH------
T ss_pred HHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchhhhhHH------
Confidence 35799999888776554432211 2345778999999999999999999987 444442 23221100111
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC--------CC-----------cEE
Q 002115 257 IESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL--------HE-----------SKI 317 (965)
Q Consensus 257 ~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~--------~g-----------s~i 317 (965)
++...+.. + +++-+|.+|.+..-+...-+.+..++-++. ++ +-|
T Consensus 91 ---------------dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 91 ---------------DLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp ---------------HHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred ---------------HHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 11111111 1 245577889887754433344444443321 11 223
Q ss_pred EEeecchHHHhhcCCc--ceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhh
Q 002115 318 LITTRKEIVARCMRST--NVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLL 391 (965)
Q Consensus 318 lvTtR~~~v~~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l 391 (965)
=-|||...+...+..- -..+++..+.+|-.++..+.+..-.- +--++.+.+|++.|.|-|--+.-+-+..
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 3477776555444332 24579999999999999876643222 2234568899999999997665544443
No 44
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.57 E-value=6.3e-08 Score=93.06 Aligned_cols=127 Identities=26% Similarity=0.302 Sum_probs=45.9
Q ss_pred hcCceeEEEecccccccccccchHHhh-cCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchh
Q 002115 562 HVKRLRSLLVESYEYSWSSEVLPQLFD-KLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPET 640 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~-~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~ 640 (965)
+..++|.|.+.++....+.. +. .+.+|++|+|++|. |..++ .+..+++|++|++++|. ++.+++.
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~-----L~~~l~~L~~L~Ls~N~-------I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~ 82 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN-----LGATLDKLEVLDLSNNQ-------ITKLE-GLPGLPRLKTLDLSNNR-ISSISEG 82 (175)
T ss_dssp -------------------S-------TT-TT--EEE-TTS---------S--T-T----TT--EEE--SS----S-CHH
T ss_pred cccccccccccccccccccc-----hhhhhcCCCEEECCCCC-------Ccccc-CccChhhhhhcccCCCC-CCccccc
Confidence 44567777777776433322 33 46788888888444 44443 46678888888888888 7777665
Q ss_pred h-hccCCCcEEeccCcccccccC--ccccCCCCccEeecCCCcccccccc----cCCCcccccccCceEec
Q 002115 641 L-CELYNLEHLDISYCRNLRELP--QGIGKLRKLMYLENDGTYSLRYLPV----GIGELIRLRIVKEFVVG 704 (965)
Q Consensus 641 i-~~L~~L~~LdL~~~~~l~~lP--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~l~~~~ 704 (965)
+ ..+++|++|++++|. +..+- ..+..+++|++|++.+|.. ...+. -+..+++|+.|+...+.
T Consensus 83 l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred hHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEEcc
Confidence 5 468888888888887 55442 2356788888888888843 22222 14566777777665543
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.57 E-value=2.1e-08 Score=113.32 Aligned_cols=107 Identities=34% Similarity=0.435 Sum_probs=80.7
Q ss_pred hhcCCccceEEcCcccccccccchhhHHhhhhccC-CCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccc
Q 002115 587 FDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLL-HLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGI 665 (965)
Q Consensus 587 ~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~-~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i 665 (965)
+..++.+..|++. ++.+..+|..++.+. +|++|++++|. +..+|..+..+++|+.|++++|. +..+|...
T Consensus 112 ~~~~~~l~~L~l~-------~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~ 182 (394)
T COG4886 112 LLELTNLTSLDLD-------NNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLL 182 (394)
T ss_pred hhcccceeEEecC-------CcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhh
Confidence 4555778888887 555567777777774 88888888888 88887778888888888888887 78888776
Q ss_pred cCCCCccEeecCCCcccccccccCCCcccccccCceEe
Q 002115 666 GKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVV 703 (965)
Q Consensus 666 ~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~ 703 (965)
..+++|+.|++++| .+..+|..++.+..|++|.+..+
T Consensus 183 ~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 183 SNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCC
Confidence 67888888888887 66677776666666777766655
No 46
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.57 E-value=2.4e-06 Score=103.61 Aligned_cols=314 Identities=17% Similarity=0.159 Sum_probs=177.3
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceE---EEEcCCCC---CHHHH
Q 002115 179 EIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRI---WVCVSEPF---DEFRI 252 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~---wv~vs~~~---~~~~~ 252 (965)
.++||+.+.+.+.+.+..... +...++.+.|..|||||+++++|... +.+.+...+ +-....+. .....
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHH
Confidence 368999999999999876543 35569999999999999999999976 322211111 10111111 11223
Q ss_pred HHHHHHHh-------------------cCCCC-----------------C-----CCCHH-----HHHHHHHHHh-CCce
Q 002115 253 ARAIIESL-------------------TGSAS-----------------N-----FGEFQ-----SLMQHIQECV-EGKK 285 (965)
Q Consensus 253 ~~~i~~~l-------------------~~~~~-----------------~-----~~~~~-----~l~~~l~~~l-~~kr 285 (965)
.++++.++ +.... . ..... .....+.... +.++
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 33333333 11100 0 00001 1112223333 3569
Q ss_pred EEEEEeCCCcchhhchHhHHhhhcCCC------CCcEEEEeecch--HHHhhcCCcceEeCCCCChHHHHHHHHHHhccC
Q 002115 286 FLLVLDDLWNEVYYKWEPFYKCLKNGL------HESKILITTRKE--IVARCMRSTNVIYVNVLSEIECWSVFEQLAFFG 357 (965)
Q Consensus 286 ~LlVlDdv~~~~~~~~~~l~~~l~~~~------~gs~ilvTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 357 (965)
.++|+||+...+....+-+........ +..-.+.|.+.. .+-..-.+...+.|.||+..+...+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 999999995433333333322222211 112233333333 122222335789999999999999998876321
Q ss_pred CCccchhHHHHHHHHHHHHcCCChHhHHHHHHhhcCC------CCHHHHHHHHhhhhhhhhhhhhhhhhHHHHhhcCCcH
Q 002115 358 RSMEECEKLENMGRQIVRKCKGLPLAAKTIASLLQSR------NTEKEWQNILESEIWELEEVERGLLAPLLLSYNELPS 431 (965)
Q Consensus 358 ~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~ 431 (965)
. ....+....|+++..|+|+-+..+-..+... .+...|..-..+ .......++ +...+..-.+.||.
T Consensus 236 ~-----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~~~-vv~~l~~rl~kL~~ 308 (849)
T COG3899 236 K-----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATTDA-VVEFLAARLQKLPG 308 (849)
T ss_pred c-----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhhHH-HHHHHHHHHhcCCH
Confidence 1 2233457889999999999999988888664 233344321111 111111222 55568888999999
Q ss_pred hHHHHHhHhcccCCCceecHHHHHHHHHhCCccccCCCCcHHHHHHHHHHHHHhCCCccccccCCCCC---ee-EEEeCh
Q 002115 432 KIKQCFTYCAIFPKDYQIQKKELINLWMAQGYLSKKGTKEMEDIGEEYFNILASRSFFQDFRRYGLGE---NY-VCKMHD 507 (965)
Q Consensus 432 ~lk~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~~~l~~L~~~sl~~~~~~~~~~~---~~-~~~~Hd 507 (965)
..+..+...|++... |+.+.|-..|-. .....+...++.|....++...+....+. .. +-..||
T Consensus 309 ~t~~Vl~~AA~iG~~--F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~ 376 (849)
T COG3899 309 TTREVLKAAACIGNR--FDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHD 376 (849)
T ss_pred HHHHHHHHHHHhCcc--CCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHH
Confidence 999999999999654 556666555421 23455666566665555554332221211 11 114688
Q ss_pred hHHHHHHHh
Q 002115 508 IVHDFAQFL 516 (965)
Q Consensus 508 lv~~~a~~~ 516 (965)
+|++.|-..
T Consensus 377 ~vqqaaY~~ 385 (849)
T COG3899 377 RVQQAAYNL 385 (849)
T ss_pred HHHHHHhcc
Confidence 888877543
No 47
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.54 E-value=1.2e-06 Score=90.54 Aligned_cols=169 Identities=18% Similarity=0.153 Sum_probs=99.0
Q ss_pred chHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcC
Q 002115 183 REEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTG 262 (965)
Q Consensus 183 r~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 262 (965)
.+..++.+.+++.. .....|.|+|..|+|||+||+.+++. ........++++++.-.+. ...+
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~---~~~~------ 84 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQA---DPEV------ 84 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHh---HHHH------
Confidence 34566777776532 24568999999999999999999986 2223334566655432110 0011
Q ss_pred CCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhh-ch-HhHHhhhcC-CCCCcEEEEeecchH---------HHhhc
Q 002115 263 SASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYY-KW-EPFYKCLKN-GLHESKILITTRKEI---------VARCM 330 (965)
Q Consensus 263 ~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~ 330 (965)
...+.+ .-+||+||++..... .| +.+...+.. ...+..+|+||+... +...+
T Consensus 85 ---------------~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 85 ---------------LEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred ---------------Hhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 111222 238999999764322 23 334444432 123457889887532 12222
Q ss_pred CCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHH
Q 002115 331 RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIA 388 (965)
Q Consensus 331 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 388 (965)
.....+++.++++++...++...+-.... .. -++..+.|++.+.|.|..+.-+.
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~---~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGL-QL---PDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHhccCCHHHHHHHH
Confidence 23467899999999999998875432211 11 12345667777888887666553
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.8e-08 Score=103.21 Aligned_cols=160 Identities=18% Similarity=0.096 Sum_probs=104.6
Q ss_pred ceEEEEEEEeCCCccchh-hHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhh
Q 002115 540 KKVLHLMLNLDGRHLVSI-SIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIE 618 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~ 618 (965)
+++|.+++.+......+. .....|+++|.|+++.+-+..+.. +-.....+++|+.|+|+.|.+.. ..... .-.
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls~Nrl~~---~~~s~--~~~ 194 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLSSNRLSN---FISSN--TTL 194 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHH-HHHHHHhcccchhcccccccccC---Ccccc--chh
Confidence 567777777776654332 344589999999998875433333 34456889999999999887641 11111 112
Q ss_pred ccCCCcEEEeCCccCcc--ccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCccccccc--ccCCCccc
Q 002115 619 NLLHLKYLNLAHQREIE--KLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLP--VGIGELIR 694 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~--~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p--~~i~~l~~ 694 (965)
.+.||+.|.|+.|. +. .+-.....+++|+.|+|.+|..+..--.....+..|+.|+|++|+. ...+ ..++.++.
T Consensus 195 ~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l-i~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL-IDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc-cccccccccccccc
Confidence 67899999999998 54 2233455788999999999853333222344577899999998844 3444 33667777
Q ss_pred ccccCceEecCcc
Q 002115 695 LRIVKEFVVGGGY 707 (965)
Q Consensus 695 L~~L~l~~~~~~~ 707 (965)
|..|++..++..+
T Consensus 273 L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 273 LNQLNLSSTGIAS 285 (505)
T ss_pred hhhhhccccCcch
Confidence 7777766555443
No 49
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=1.1e-05 Score=92.84 Aligned_cols=184 Identities=15% Similarity=0.114 Sum_probs=115.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccc-------------------cccce
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKR-------------------NFEKR 238 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 238 (965)
.+++|.+..++.|.+++... .-...+.++|..|+||||+|+.+.+...-.. .|...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 46899999999999998533 2345677999999999999998876421111 11112
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEE
Q 002115 239 IWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQE-CVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKI 317 (965)
Q Consensus 239 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 317 (965)
++++.+....++ ++.++.+.... -..++.-++|||++...+...|+.++..+-......++
T Consensus 91 iEIDAas~rgVD------------------dIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~F 152 (830)
T PRK07003 91 VEMDAASNRGVD------------------EMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKF 152 (830)
T ss_pred EEecccccccHH------------------HHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEE
Confidence 222222111111 11112221111 11345568999999887767788888887766667788
Q ss_pred EEeecchH-HHh-hcCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCCh-HhHHHHH
Q 002115 318 LITTRKEI-VAR-CMRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLP-LAAKTIA 388 (965)
Q Consensus 318 lvTtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP-lai~~~~ 388 (965)
|+||.+.. +.. ...-...+.+.+++.++..+.+.+.+-...... -.+..+.|++.++|.. -|+..+-
T Consensus 153 ILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i----d~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 153 ILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF----EPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred EEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 88777643 322 123367899999999999999988764332211 1344678999999865 4555433
No 50
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=2.9e-06 Score=91.96 Aligned_cols=179 Identities=17% Similarity=0.141 Sum_probs=117.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccc----cccccccceEEEEc-CCCCCHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNND----GVKRNFEKRIWVCV-SEPFDEFRI 252 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~v-s~~~~~~~~ 252 (965)
.+++|.+..++.+.+++... .-.....++|+.|+||||+|+.++..- ....|.|...|... +.....+.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 35789999999999998533 244577899999999999999888741 12345666556542 22223222
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchHHH-h-hc
Q 002115 253 ARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEIVA-R-CM 330 (965)
Q Consensus 253 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~-~-~~ 330 (965)
.+++.+.+... -..+++=++|+|++...+...++.+...+.....++.+|++|.+.... . ..
T Consensus 78 ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 22232322111 122456677788876666678999999998877889999888654321 1 12
Q ss_pred CCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHH
Q 002115 331 RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKT 386 (965)
Q Consensus 331 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~ 386 (965)
.....+++.++++++....+.+...+ . . .+.++.++..++|.|.-+..
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~-~---~----~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND-I---K----EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC-C---C----HHHHHHHHHHcCCCHHHHHH
Confidence 23578999999999998888664311 1 1 12366788999999876543
No 51
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.50 E-value=3e-08 Score=95.28 Aligned_cols=109 Identities=27% Similarity=0.311 Sum_probs=39.8
Q ss_pred hhcCCccceEEcCcccccccccchhhHHhhhh-ccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccc
Q 002115 587 FDKLTCLRALTLGVHSLRLCENCIKEVRTNIE-NLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGI 665 (965)
Q Consensus 587 ~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~-~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i 665 (965)
+.+...++.|+|+ ++.|..+ +.++ .+.+|+.|+|++|. ++.++. +..|++|++|++++|. ++.++..+
T Consensus 15 ~~n~~~~~~L~L~-------~n~I~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l 83 (175)
T PF14580_consen 15 YNNPVKLRELNLR-------GNQISTI-ENLGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNNR-ISSISEGL 83 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHH
T ss_pred ccccccccccccc-------ccccccc-cchhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCCC-CCccccch
Confidence 4556678999999 4444554 3455 57899999999999 888875 8889999999999998 88886666
Q ss_pred -cCCCCccEeecCCCccccccc--ccCCCcccccccCceEecCcc
Q 002115 666 -GKLRKLMYLENDGTYSLRYLP--VGIGELIRLRIVKEFVVGGGY 707 (965)
Q Consensus 666 -~~L~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~l~~~~~~~ 707 (965)
..+++|++|++++|. +..+- ..+..+++|+.|++..|+...
T Consensus 84 ~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred HHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccc
Confidence 468999999999883 33322 235566777777776666554
No 52
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=6.4e-06 Score=90.95 Aligned_cols=193 Identities=16% Similarity=0.197 Sum_probs=111.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.+++|.+..++.+.+.+... .-...+.++|+.|+||||+|+.+.+.-.-...+. ..++..-.....+.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 46899999999998888543 2345788999999999999999987521110000 00000000011111
Q ss_pred HHhcC-----CCCCCCCHHHHHHHHHH---H-hCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecc-hHHH
Q 002115 258 ESLTG-----SASNFGEFQSLMQHIQE---C-VEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRK-EIVA 327 (965)
Q Consensus 258 ~~l~~-----~~~~~~~~~~l~~~l~~---~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 327 (965)
..... ........+.....+.. . ..+++-++|+|++.......++.+...+.......++|++|.+ ..+.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 10000 00000112222111111 0 1245569999999876656777888877766566777776644 3333
Q ss_pred hh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHH
Q 002115 328 RC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKT 386 (965)
Q Consensus 328 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~ 386 (965)
.. .+....+++.+++.++..+.+...+...+... -++.+..|++.++|.|-.+..
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i----~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT----DEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 22 22357899999999999998887664322111 123467789999998864433
No 53
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.49 E-value=6.3e-09 Score=112.26 Aligned_cols=193 Identities=26% Similarity=0.269 Sum_probs=151.9
Q ss_pred CccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCC
Q 002115 591 TCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRK 670 (965)
Q Consensus 591 ~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~ 670 (965)
..-...||+ .+.+.++|..++.+..|..|.|..|. +..+|..+++|..|.+|||+.|+ +..+|..++.|+
T Consensus 75 tdt~~aDls-------rNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp- 144 (722)
T KOG0532|consen 75 TDTVFADLS-------RNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP- 144 (722)
T ss_pred cchhhhhcc-------ccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-
Confidence 344557777 45557899999999999999999999 99999999999999999999999 999999998886
Q ss_pred ccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCC
Q 002115 671 LMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNL 750 (965)
Q Consensus 671 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L 750 (965)
|+.|-+++| .++.+|..|+.+..|..|+.+.|.+.. +.+.++.+.+|
T Consensus 145 Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~s--------------------------------lpsql~~l~sl 191 (722)
T KOG0532|consen 145 LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQS--------------------------------LPSQLGYLTSL 191 (722)
T ss_pred ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhh--------------------------------chHHhhhHHHH
Confidence 999999888 788999999977788877766554433 11345555667
Q ss_pred CceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCC
Q 002115 751 SNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEH 830 (965)
Q Consensus 751 ~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~ 830 (965)
+.|.+..|++ ..+++.+. .-.|.+|+++.|++.. +| ..|..|+.|++|-|.+|.+...
T Consensus 192 r~l~vrRn~l------------------~~lp~El~-~LpLi~lDfScNkis~--iP-v~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 192 RDLNVRRNHL------------------EDLPEELC-SLPLIRLDFSCNKISY--LP-VDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred HHHHHhhhhh------------------hhCCHHHh-CCceeeeecccCceee--cc-hhhhhhhhheeeeeccCCCCCC
Confidence 7777777743 33455555 3358999999999998 88 7889999999999999977643
Q ss_pred CCC---CCCCCCcceeeecCC
Q 002115 831 LPP---LGKLPSIEVLEIYGV 848 (965)
Q Consensus 831 lp~---l~~L~~L~~L~L~~~ 848 (965)
... -|...-.++|+..-|
T Consensus 250 PAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 250 PAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hHHHHhccceeeeeeecchhc
Confidence 222 456666788888877
No 54
>PRK04195 replication factor C large subunit; Provisional
Probab=98.49 E-value=1.5e-05 Score=91.79 Aligned_cols=247 Identities=15% Similarity=0.126 Sum_probs=140.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.+++|.++.++.+.+|+..... +...+.+.|+|++|+||||+|+.++++ .. |+ .+-++++...+.. ....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~-~ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALAND--YG--WE-VIELNASDQRTAD-VIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEcccccccHH-HHHHHH
Confidence 4689999999999999865432 123678999999999999999999987 22 22 3344555433322 233333
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchh----hchHhHHhhhcCCCCCcEEEEeecch-HHHh-h-c
Q 002115 258 ESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVY----YKWEPFYKCLKNGLHESKILITTRKE-IVAR-C-M 330 (965)
Q Consensus 258 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~-~-~ 330 (965)
....... .....++-+||+|+++.... ..+..+...+... +..||+|+... .... . -
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchhhHh
Confidence 2221110 00113678999999976322 2355565555432 34466666432 1111 1 1
Q ss_pred CCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhhcCC-C--CHHHHHHHHhhh
Q 002115 331 RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLLQSR-N--TEKEWQNILESE 407 (965)
Q Consensus 331 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~-~--~~~~w~~~l~~~ 407 (965)
.....+.+.+++.++....+.+.+........ .+....|++.++|-.-.+......+... . +.+.-..+..
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~-- 223 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR-- 223 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc--
Confidence 23568899999999999998887644332222 2457789999999776665443334332 1 2333322221
Q ss_pred hhhhhhhhhhhhhHHHHhhc-CCcHhHHHHHhHhcccCCCceecHHHHHHHHHhCCcccc
Q 002115 408 IWELEEVERGLLAPLLLSYN-ELPSKIKQCFTYCAIFPKDYQIQKKELINLWMAQGYLSK 466 (965)
Q Consensus 408 ~~~~~~~~~~i~~~l~~sy~-~L~~~lk~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~ 466 (965)
.+....++.++..-+. .-+......+..+ .++.+ .+-.|+.|.+...
T Consensus 224 ----~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~~-~i~~~l~en~~~~ 271 (482)
T PRK04195 224 ----RDREESIFDALDAVFKARNADQALEASYDV-------DEDPD-DLIEWIDENIPKE 271 (482)
T ss_pred ----CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCHH-HHHHHHHhccccc
Confidence 1122345666664444 2233333322221 22333 4678999998764
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.47 E-value=1.4e-08 Score=105.89 Aligned_cols=162 Identities=15% Similarity=0.217 Sum_probs=86.6
Q ss_pred CCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC---CCCCCCcceeeecCCCCceEeCccccCCCC
Q 002115 787 PPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP---LGKLPSIEVLEIYGVQSVKRVGNEFLGVES 863 (965)
Q Consensus 787 ~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~---l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~ 863 (965)
.+..|+.|..+++....+..-.....+.++|+.|-|+.|........ -.+.+.|+.|++.+|..+.. ..+...
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d--~tL~sl-- 367 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD--GTLASL-- 367 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh--hhHhhh--
Confidence 34456666666554432211101112566677777777654332211 23566777777766553221 112111
Q ss_pred CCCCccccCCcccccccccccccccccCcccccccccccCcccceEeeccCccCcC-CCcCCCCCCCCCeEeEcCCcchH
Q 002115 864 DTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKA-LPDRLLQKTTLQALTIGECPILE 942 (965)
Q Consensus 864 ~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~-lp~~l~~l~~L~~L~l~~c~~l~ 942 (965)
..++|.|+.|.+++|...+.-.+. .+......+..|+.|++.+||.+.. .-+.+..+++|+.+++.+|..+.
T Consensus 368 ------s~~C~~lr~lslshce~itD~gi~-~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 368 ------SRNCPRLRVLSLSHCELITDEGIR-HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred ------ccCCchhccCChhhhhhhhhhhhh-hhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 136777888887777644432110 0011123677888899999987542 23456678889999999988754
Q ss_pred HhhccCCCCCCcccCCCCCcccC
Q 002115 943 ERCRKETGEDWPKIRHIPDVFIA 965 (965)
Q Consensus 943 ~~~~~~~~~~~~~i~hip~i~i~ 965 (965)
..-.. +-.+|.|++.+|
T Consensus 441 k~~i~------~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 441 KEAIS------RFATHLPNIKVH 457 (483)
T ss_pred hhhhH------HHHhhCccceeh
Confidence 32211 123667766654
No 56
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.47 E-value=3.9e-06 Score=92.73 Aligned_cols=198 Identities=14% Similarity=0.065 Sum_probs=109.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccccccccc-ceEEEEcCCCCCH--HHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFE-KRIWVCVSEPFDE--FRIAR 254 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~--~~~~~ 254 (965)
.+++|++..++.+..++... ..+.+.++|.+|+||||+|+.+.+... ...+. ..+.++++.-.+. ..+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 46899999999999888532 334678999999999999999987521 11222 2344444321100 00000
Q ss_pred --HHHHHhcCC-CCCCCCHHHHHHHHHHH---h--CCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecch-H
Q 002115 255 --AIIESLTGS-ASNFGEFQSLMQHIQEC---V--EGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKE-I 325 (965)
Q Consensus 255 --~i~~~l~~~-~~~~~~~~~l~~~l~~~---l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~ 325 (965)
.....+... .......+.....++.. . .+.+-+||+||+..-.......+...+......+++|+|+... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000 00001112222222221 1 2345589999996544334555666555444557788877543 2
Q ss_pred HHhhc-CCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHH
Q 002115 326 VARCM-RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKT 386 (965)
Q Consensus 326 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~ 386 (965)
+...+ .....+.+.+++.++...++...+-..+..- -.+..+.+++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~----~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY----DDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 22211 2245788999999999999988764332211 134567788889887665543
No 57
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.46 E-value=8.1e-08 Score=108.57 Aligned_cols=103 Identities=23% Similarity=0.287 Sum_probs=83.2
Q ss_pred eEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccC-CCcEEeccCcccccccCccccCCCCccE
Q 002115 595 ALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELY-NLEHLDISYCRNLRELPQGIGKLRKLMY 673 (965)
Q Consensus 595 ~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~-~L~~LdL~~~~~l~~lP~~i~~L~~L~~ 673 (965)
.|++..+. +...+..+..+..+..|++.++. +..+|.....+. +|+.|++++|. +..+|..++.+++|+.
T Consensus 97 ~l~~~~~~-------~~~~~~~~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~ 167 (394)
T COG4886 97 SLDLNLNR-------LRSNISELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKN 167 (394)
T ss_pred eeeccccc-------cccCchhhhcccceeEEecCCcc-cccCccccccchhhcccccccccc-hhhhhhhhhccccccc
Confidence 56666333 32334456667899999999999 999999888885 99999999998 8999888999999999
Q ss_pred eecCCCcccccccccCCCcccccccCceEecCcc
Q 002115 674 LENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGY 707 (965)
Q Consensus 674 L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~ 707 (965)
|++++| .+..+|...+.+++|+.|++..+....
T Consensus 168 L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N~i~~ 200 (394)
T COG4886 168 LDLSFN-DLSDLPKLLSNLSNLNNLDLSGNKISD 200 (394)
T ss_pred cccCCc-hhhhhhhhhhhhhhhhheeccCCcccc
Confidence 999999 677888877788888888887766544
No 58
>PTZ00202 tuzin; Provisional
Probab=98.46 E-value=9.5e-06 Score=86.78 Aligned_cols=171 Identities=16% Similarity=0.181 Sum_probs=107.7
Q ss_pred cCCCCCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHH
Q 002115 172 ISSIDESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFR 251 (965)
Q Consensus 172 ~~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 251 (965)
..+.+...|+||+++...+...|...+. ...+++.|+|++|+|||||++.+..... + ...+++.. +..+
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eE 324 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTED 324 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHH
Confidence 3455667899999999999998865432 2456999999999999999999996522 2 12333333 6799
Q ss_pred HHHHHHHHhcCCCCCC--CCHHHHHHHHHHHh-C-CceEEEEEeCCCcch-hhchHhHHhhhcCCCCCcEEEEeecchHH
Q 002115 252 IARAIIESLTGSASNF--GEFQSLMQHIQECV-E-GKKFLLVLDDLWNEV-YYKWEPFYKCLKNGLHESKILITTRKEIV 326 (965)
Q Consensus 252 ~~~~i~~~l~~~~~~~--~~~~~l~~~l~~~l-~-~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 326 (965)
+++.|+.+|+...... .-.+.+.+.+.+.- . +++.+||+-==.-.+ ...+.+. ..|.....-|+|++---.+.+
T Consensus 325 lLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evplesl 403 (550)
T PTZ00202 325 TLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhc
Confidence 9999999999732211 11233333333322 2 677777765322111 1122222 234455566788886554443
Q ss_pred Hhh---cCCcceEeCCCCChHHHHHHHHHHh
Q 002115 327 ARC---MRSTNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 327 ~~~---~~~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
.-. ..--..|.+..++.++|.++-.+..
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 221 1224588899999999998877653
No 59
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=9.7e-07 Score=100.38 Aligned_cols=197 Identities=17% Similarity=0.130 Sum_probs=114.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.+++|.+..++.+..++... .-...+.++|++|+||||+|+.+++...-.+.+....|+|.+... +......-+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~-----~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQG-----RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 36899999988888888543 234567999999999999999998763212222222333221100 000000000
Q ss_pred HHhcCC-CCCCCCHHHHHHHHHH-HhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeec-chHHHhhc-CCc
Q 002115 258 ESLTGS-ASNFGEFQSLMQHIQE-CVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTR-KEIVARCM-RST 333 (965)
Q Consensus 258 ~~l~~~-~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR-~~~v~~~~-~~~ 333 (965)
..+... .....++.++...+.. -..+++-++|+|+++......++.+...+......+.+|++|. ...+...+ ...
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 000000 0001111222222221 1235667999999987666678888888876655556555554 33332222 335
Q ss_pred ceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhH
Q 002115 334 NVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAA 384 (965)
Q Consensus 334 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai 384 (965)
..+++.+++.++..+.+.+.+-..+... -++....|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 6899999999999999998775433211 1235678999999988544
No 60
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.44 E-value=1.8e-06 Score=82.52 Aligned_cols=125 Identities=19% Similarity=0.162 Sum_probs=73.8
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHh
Q 002115 181 FGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESL 260 (965)
Q Consensus 181 vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 260 (965)
+|++..++.+...+... ..+.+.|+|.+|+||||+++.+++... ..-..++++..++..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888899998888542 345899999999999999999998732 222346677665543322221111100
Q ss_pred cCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCC------CCCcEEEEeecchH
Q 002115 261 TGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNG------LHESKILITTRKEI 325 (965)
Q Consensus 261 ~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~ilvTtR~~~ 325 (965)
............++-++|+||++.........+...+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0111112223456789999999853222223333333322 35778888887643
No 61
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=5.2e-06 Score=97.44 Aligned_cols=184 Identities=15% Similarity=0.163 Sum_probs=115.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccccccc-------------------ccce
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRN-------------------FEKR 238 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 238 (965)
.++||.+..++.+.+++... .-...+.++|..|+||||+|+.+++...-... |...
T Consensus 16 ddIIGQe~Iv~~LknaI~~~-----rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ-----RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 46899999999999888543 13445689999999999999999976211100 1111
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEE
Q 002115 239 IWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQE-CVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKI 317 (965)
Q Consensus 239 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 317 (965)
+++..+....+ .++.++...+.. ...+++-++|+|++........+.++..+-......++
T Consensus 91 iEidAas~~kV------------------DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRTKV------------------DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEeccccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 22211111111 112222222221 12467789999999887777788888877665556666
Q ss_pred EEeecc-hHHHhh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHH
Q 002115 318 LITTRK-EIVARC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIA 388 (965)
Q Consensus 318 lvTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 388 (965)
|++|.+ ..+... ......|++.+|+.++...++.+.+-..... .-.+....|++.++|.|--+..+.
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~----~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP----FEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 665543 443322 2335789999999999999998866332211 113356789999999886554443
No 62
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=6.7e-06 Score=93.57 Aligned_cols=193 Identities=15% Similarity=0.130 Sum_probs=114.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.+++|.+...+.+.+++... .-...+.++|..|+||||+|+.+.+.-. |.-++.. .++..-...+.|.
T Consensus 15 ddVIGQe~vv~~L~~aI~~g-----rl~HAyLF~GPpGvGKTTlAriLAK~Ln------C~~~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG-----RLHHAYLFTGTRGVGKTTIARILAKCLN------CETGVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhC------CCcCCCC-CCCccCHHHHHHh
Confidence 46899999999999998643 2346889999999999999998876511 1001110 0111111111111
Q ss_pred HHhcC-----CCCCCCCHHHHHHHHHH----HhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecch-HHH
Q 002115 258 ESLTG-----SASNFGEFQSLMQHIQE----CVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKE-IVA 327 (965)
Q Consensus 258 ~~l~~-----~~~~~~~~~~l~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~ 327 (965)
..-.. ........+...+.+.. -..+++-++|+|++..-+....+.+...+.....+.++|++|.+. .+.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 10000 00001112222222211 123566799999998766667777888777665667787777543 222
Q ss_pred -hhcCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHH
Q 002115 328 -RCMRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKT 386 (965)
Q Consensus 328 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~ 386 (965)
........+++.+++.++..+.+.+.+-..+.... .+....|++.++|.+-.+..
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 22234678999999999999999887644332222 23467789999997755443
No 63
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.43 E-value=5.6e-07 Score=89.85 Aligned_cols=48 Identities=31% Similarity=0.408 Sum_probs=32.9
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccc
Q 002115 179 EIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNND 229 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 229 (965)
.|+||+++.+++...|. .. .....+++.|+|.+|+|||+|.++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~--~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AA--QSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GT--SS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HH--HcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999995 21 23456899999999999999999999873
No 64
>PF13173 AAA_14: AAA domain
Probab=98.42 E-value=1.2e-06 Score=81.06 Aligned_cols=119 Identities=24% Similarity=0.218 Sum_probs=79.2
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCce
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKK 285 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 285 (965)
+++.|.|+.|+||||++++++.+.. .-..++|++..+......... + ..+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------D-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------h-hHHHHHHhhccCC
Confidence 5899999999999999999987622 234567776655332111000 0 2223333333477
Q ss_pred EEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchHHHhh------cCCcceEeCCCCChHHH
Q 002115 286 FLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEIVARC------MRSTNVIYVNVLSEIEC 346 (965)
Q Consensus 286 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~------~~~~~~~~l~~L~~~~~ 346 (965)
.+|++|++... ..|......+.+..+..+|++|+.+...... .+....+++.||+-.|.
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 88999999763 4788877777776667899999987655532 12245778999988774
No 65
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2.7e-05 Score=84.84 Aligned_cols=206 Identities=17% Similarity=0.218 Sum_probs=131.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccccccccc-c-eEEEEcCCCCCHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFE-K-RIWVCVSEPFDEFRIARA 255 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~-~~wv~vs~~~~~~~~~~~ 255 (965)
..+.+|+++++++...|...-. +..+.-+.|+|..|.|||+.++.|.+. ++.... . .++|++-...++..++..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 4489999999999998865433 223334999999999999999999987 433321 1 689999999999999999
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhC--CceEEEEEeCCCcchhhchHhHHhhhcCCC-CCcEEEE--eecchHHHhhc
Q 002115 256 IIESLTGSASNFGEFQSLMQHIQECVE--GKKFLLVLDDLWNEVYYKWEPFYKCLKNGL-HESKILI--TTRKEIVARCM 330 (965)
Q Consensus 256 i~~~l~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-~gs~ilv--TtR~~~v~~~~ 330 (965)
|+.+++..........+....+.+.+. ++.++||||++..-....-+.+...+.... ..++|++ .+-.-.....+
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 999997544444555666666766664 689999999996532111134444444332 2454433 33333222222
Q ss_pred CC-------cceEeCCCCChHHHHHHHHHHhccC--CCccchhHHHHHHHHHHHHcCCChHhHHHH
Q 002115 331 RS-------TNVIYVNVLSEIECWSVFEQLAFFG--RSMEECEKLENMGRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 331 ~~-------~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 387 (965)
.. ...+...|-+.+|-...+..++-.. ........++-++...++..|-.-.|+..+
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 11 2347889999999999998886422 111223334444444444444444444443
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=1.4e-05 Score=90.67 Aligned_cols=194 Identities=16% Similarity=0.142 Sum_probs=113.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccc-eEEEEcCCCCCHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEK-RIWVCVSEPFDEFRIARAI 256 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i 256 (965)
.+++|.+..+..+...+... .-...+.++|..|+||||+|+.+++.-.-...... ..+..+ ..-.....|
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C----~~C~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC----EQCTNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC----CCChHHHHH
Confidence 36899999999888877532 23457889999999999999999875211100000 000000 000001111
Q ss_pred HHHhcC-----CCCCCCCHHHHHHHHHH----HhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEE-eecchHH
Q 002115 257 IESLTG-----SASNFGEFQSLMQHIQE----CVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILI-TTRKEIV 326 (965)
Q Consensus 257 ~~~l~~-----~~~~~~~~~~l~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v 326 (965)
...... ........+.+...+.. -+.+++-++|+|+++.-+...|+.+...+......+++|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 100000 00011122222222221 1246777999999988766788888888876666666655 5455555
Q ss_pred Hhhc-CCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhH
Q 002115 327 ARCM-RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAA 384 (965)
Q Consensus 327 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai 384 (965)
...+ .....+++.+++.++....+...+-..+...+ .+....|++.++|.+--+
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 4433 33568999999999999999988754332112 234567889999977544
No 67
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.39 E-value=6.6e-08 Score=98.76 Aligned_cols=264 Identities=19% Similarity=0.150 Sum_probs=164.3
Q ss_pred HHhhhhccCCCcEEEeCCccCcc----ccchhhhccCCCcEEeccCcc---cccccCcc-------ccCCCCccEeecCC
Q 002115 613 VRTNIENLLHLKYLNLAHQREIE----KLPETLCELYNLEHLDISYCR---NLRELPQG-------IGKLRKLMYLENDG 678 (965)
Q Consensus 613 lp~~i~~L~~Lr~L~L~~~~~i~----~lp~~i~~L~~L~~LdL~~~~---~l~~lP~~-------i~~L~~L~~L~l~~ 678 (965)
+-+.+..+..+.+|+|++|.+-. .+.+.+.+.++|+..+++.-. ...++|.. +-..++|+.|+|+.
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 34456678899999999999322 244557778899999998642 11234543 34567999999999
Q ss_pred Cccccccccc----CCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceE
Q 002115 679 TYSLRYLPVG----IGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLE 754 (965)
Q Consensus 679 ~~~~~~~p~~----i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 754 (965)
|......+.. |.++++|+.|.+.+++.....+..++. .|..|. ......+.+.|+.+.
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~----------------~~kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA----------------VNKKAASKPKLRVFI 163 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH----------------HHhccCCCcceEEEE
Confidence 9554444433 456788888888877765422222211 111110 112334567899999
Q ss_pred EEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCC--ChhhHhhccCCcEEEEecCCCCCC--
Q 002115 755 LHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVV--PKIWITSLTNLRVLSLFECRNCEH-- 830 (965)
Q Consensus 755 L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~--p~~~~~~l~~L~~L~L~~~~~~~~-- 830 (965)
...|.+... .....-..+..++.|+.+++..|.+..... -...+..+++|+.|+|.+|.++..
T Consensus 164 ~~rNrlen~-------------ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs 230 (382)
T KOG1909|consen 164 CGRNRLENG-------------GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS 230 (382)
T ss_pred eeccccccc-------------cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH
Confidence 998866432 223344566777899999999887654211 002345799999999999977643
Q ss_pred --CC-CCCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccccccccccccccccCcccccccccccCcccc
Q 002115 831 --LP-PLGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLS 907 (965)
Q Consensus 831 --lp-~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~ 907 (965)
+. .+..+|+|+.|++.+|. ++.-|..-.... -...+|+|+.|.+.+|. .+.-.. ..+...+...|.|.
T Consensus 231 ~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~a------l~~~~p~L~vl~l~gNe-It~da~-~~la~~~~ek~dL~ 301 (382)
T KOG1909|consen 231 VALAKALSSWPHLRELNLGDCL-LENEGAIAFVDA------LKESAPSLEVLELAGNE-ITRDAA-LALAACMAEKPDLE 301 (382)
T ss_pred HHHHHHhcccchheeecccccc-cccccHHHHHHH------HhccCCCCceeccCcch-hHHHHH-HHHHHHHhcchhhH
Confidence 11 27778899999999886 322221111000 01258999999998874 211000 00112233589999
Q ss_pred eEeeccCcc
Q 002115 908 SLSIRRCPK 916 (965)
Q Consensus 908 ~L~L~~c~~ 916 (965)
.|+|++|..
T Consensus 302 kLnLngN~l 310 (382)
T KOG1909|consen 302 KLNLNGNRL 310 (382)
T ss_pred HhcCCcccc
Confidence 999999985
No 68
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=1.1e-05 Score=92.02 Aligned_cols=185 Identities=18% Similarity=0.170 Sum_probs=114.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccccc-------------------ccccce
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVK-------------------RNFEKR 238 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 238 (965)
.+++|.+..++.+...+... .....+.++|+.|+||||+|+.+++.-.-. +.|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 46899999999999888542 234567899999999999999998641100 012222
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEE
Q 002115 239 IWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQEC-VEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKI 317 (965)
Q Consensus 239 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 317 (965)
+++........+ +..++...+... ..+++-++|+|++...+...++.+...+-.....+++
T Consensus 91 ieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 233222111111 122222222221 2456779999999876666788888888776556666
Q ss_pred EE-eecchHHHhh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChH-hHHHHHH
Q 002115 318 LI-TTRKEIVARC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPL-AAKTIAS 389 (965)
Q Consensus 318 lv-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPl-ai~~~~~ 389 (965)
|+ ||....+... ......+++.+++.++....+.+.+-..+... -++....|++.++|.+- |+..+-.
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~----e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS----DEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 64 5444444322 33467999999999998888877553322111 12345678999999664 4444433
No 69
>PLN03150 hypothetical protein; Provisional
Probab=98.37 E-value=7.5e-07 Score=105.42 Aligned_cols=105 Identities=25% Similarity=0.354 Sum_probs=79.4
Q ss_pred ccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCc
Q 002115 592 CLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKL 671 (965)
Q Consensus 592 ~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L 671 (965)
.++.|+|++|.+. ..+|..+++|.+|++|+|++|.+...+|..++.+++|++|+|++|.....+|..+++|++|
T Consensus 419 ~v~~L~L~~n~L~------g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQGLR------GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEEECCCCCcc------ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 3677888866554 4577788888888888888888556888888888888888888888556788888888888
Q ss_pred cEeecCCCcccccccccCCCc-ccccccCceE
Q 002115 672 MYLENDGTYSLRYLPVGIGEL-IRLRIVKEFV 702 (965)
Q Consensus 672 ~~L~l~~~~~~~~~p~~i~~l-~~L~~L~l~~ 702 (965)
++|++++|.....+|..++.+ .++..+++..
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecC
Confidence 888888887777888777653 2444444433
No 70
>PLN03150 hypothetical protein; Provisional
Probab=98.36 E-value=4.3e-07 Score=107.48 Aligned_cols=107 Identities=18% Similarity=0.259 Sum_probs=63.3
Q ss_pred eeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccC
Q 002115 566 LRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELY 645 (965)
Q Consensus 566 Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~ 645 (965)
++.|.+.++. +...+|..+..+++|+.|+|++|.+. ..+|..++.+++|++|+|++|.+...+|..+++|+
T Consensus 420 v~~L~L~~n~---L~g~ip~~i~~L~~L~~L~Ls~N~l~------g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 420 IDGLGLDNQG---LRGFIPNDISKLRHLQSINLSGNSIR------GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490 (623)
T ss_pred EEEEECCCCC---ccccCCHHHhCCCCCCEEECCCCccc------CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence 4555555544 23335555666666666666654443 34566666666666666666664446666666666
Q ss_pred CCcEEeccCcccccccCccccCC-CCccEeecCCCcc
Q 002115 646 NLEHLDISYCRNLRELPQGIGKL-RKLMYLENDGTYS 681 (965)
Q Consensus 646 ~L~~LdL~~~~~l~~lP~~i~~L-~~L~~L~l~~~~~ 681 (965)
+|++|+|++|.....+|..+..+ .++..+++.+|..
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 66666666666445666665442 3455666665543
No 71
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=1e-05 Score=91.82 Aligned_cols=199 Identities=14% Similarity=0.149 Sum_probs=114.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.++||.+..++.|.+++.... -...+.++|..|+||||+|+.+.+...-... +..--+ .++.+..-...+.|.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~-~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGI-TAQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccC-CCCCCcccHHHHHHH
Confidence 468999999999999986432 3456789999999999999988764211000 000000 000011011111111
Q ss_pred HHh-----cCCCCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEee-cchHHH
Q 002115 258 ESL-----TGSASNFGEFQSLMQHIQEC----VEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITT-RKEIVA 327 (965)
Q Consensus 258 ~~l-----~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~ 327 (965)
..- .........++++.+.+... ..++.-++|+|++...+...++.++..+-.-..+.++|++| ....+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 000 00000011223322222221 23566799999998877777888888776655556655555 444443
Q ss_pred hh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHH
Q 002115 328 RC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 328 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 387 (965)
.. ..-...+.+..++.++..+.+.+.+-..+...+ .+..+.|++.++|.|.-+..+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d----~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE----VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 32 233678999999999999998876533221111 234577999999999755444
No 72
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.34 E-value=1.8e-05 Score=86.75 Aligned_cols=181 Identities=14% Similarity=0.063 Sum_probs=107.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEc--CCCCCHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCV--SEPFDEFRIARA 255 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~ 255 (965)
.+++|+++.++.+..++... ..+.+.|+|.+|+||||+|+.+.+... ...+. ..++.+ +...... ....
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-HHHH
Confidence 46899999999999988532 334579999999999999999987621 11121 122222 2222211 1112
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecch-HH-HhhcCCc
Q 002115 256 IIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKE-IV-ARCMRST 333 (965)
Q Consensus 256 i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v-~~~~~~~ 333 (965)
.+..+....+ .....+-+|++|++..-.......+...+......+++|+++... .+ .......
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 2111111000 001345689999986644444556666666555567777777432 11 1111224
Q ss_pred ceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHH
Q 002115 334 NVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAK 385 (965)
Q Consensus 334 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 385 (965)
..+++.++++++....+...+...+..-. ++....+++.++|.+--+.
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 57899999999998888887643322111 3356778899999876543
No 73
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.33 E-value=1.3e-05 Score=94.21 Aligned_cols=172 Identities=20% Similarity=0.230 Sum_probs=107.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccc---cceEEEEcCCC---CCHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNF---EKRIWVCVSEP---FDEFR 251 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~---~~~~~ 251 (965)
+.++|++..+..+.+.+... ....+.|+|.+|+||||+|+.+++.......+ ...-||.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 36899999999988877422 34579999999999999999998764322222 12345554321 12222
Q ss_pred HHHHH---------------HHHhcCCC----------------CCCCCH-HHHHHHHHHHhCCceEEEEEeCCCcchhh
Q 002115 252 IARAI---------------IESLTGSA----------------SNFGEF-QSLMQHIQECVEGKKFLLVLDDLWNEVYY 299 (965)
Q Consensus 252 ~~~~i---------------~~~l~~~~----------------~~~~~~-~~l~~~l~~~l~~kr~LlVlDdv~~~~~~ 299 (965)
+...+ +...+... .+...+ ...+..+.+.+.++++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 21111 11111100 001111 23567788888899999998888877666
Q ss_pred chHhHHhhhcCCCCCcEEEE--eecchH-HHhhc-CCcceEeCCCCChHHHHHHHHHHhc
Q 002115 300 KWEPFYKCLKNGLHESKILI--TTRKEI-VARCM-RSTNVIYVNVLSEIECWSVFEQLAF 355 (965)
Q Consensus 300 ~~~~l~~~l~~~~~gs~ilv--TtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~ 355 (965)
.|+.+...+..+.+...|++ ||++.. +...+ .....+.+.+++.+|.+.++++.+-
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 78888777776666555665 566432 11111 1234678899999999999998653
No 74
>PLN03025 replication factor C subunit; Provisional
Probab=98.32 E-value=1.4e-05 Score=86.94 Aligned_cols=182 Identities=13% Similarity=0.061 Sum_probs=106.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccccccccc-ceEEEEcCCCCCHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFE-KRIWVCVSEPFDEFRIARAI 256 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 256 (965)
.+++|.++.++.+.+++... ..+.+.++|++|+||||+|+.+++... ...|. ..+-+..+...... ..+.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHH
Confidence 46889998888888776432 334577999999999999999987621 11222 12222233322222 22222
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecch-HHHh-hcCCcc
Q 002115 257 IESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKE-IVAR-CMRSTN 334 (965)
Q Consensus 257 ~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~-~~~~~~ 334 (965)
++.+...... .-.++.-++|+|++..........+...+......+++++++... .+.. ......
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2221110000 002456799999998765555555666554444557777776432 2211 112246
Q ss_pred eEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhH
Q 002115 335 VIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAA 384 (965)
Q Consensus 335 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai 384 (965)
.+++.++++++....+...+-..+-.-. .+....|++.++|-.-.+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 8999999999999998887643322111 234678889999866433
No 75
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.31 E-value=1e-06 Score=90.43 Aligned_cols=91 Identities=18% Similarity=0.109 Sum_probs=63.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCC--CCHHHHHHHHHHHhcCCCCCCCCHH------HHHH
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEP--FDEFRIARAIIESLTGSASNFGEFQ------SLMQ 275 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~l~~ 275 (965)
.-..+.|+|.+|+|||||++++|++.... +|+..+||.+++. +++.++++.+...+-....+..... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34589999999999999999999985444 8999999997776 7999999998443322222211111 1222
Q ss_pred HHHHH-hCCceEEEEEeCCCc
Q 002115 276 HIQEC-VEGKKFLLVLDDLWN 295 (965)
Q Consensus 276 ~l~~~-l~~kr~LlVlDdv~~ 295 (965)
..... -.+++.++++|++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 22222 248999999999954
No 76
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.4e-05 Score=88.51 Aligned_cols=191 Identities=14% Similarity=0.092 Sum_probs=112.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.+++|.+..+..+..++.... -...+.++|..|+||||+|+.+.+.-.-. +... ...+....+ ...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~s----C~~i~ 85 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTS----CLEIT 85 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcH----HHHHH
Confidence 468999999999888885431 23468999999999999999998752111 0000 000000001 11111
Q ss_pred HHhcCC--------CCCCCCHHHHHHHHHHH-hCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEE-eecchHHH
Q 002115 258 ESLTGS--------ASNFGEFQSLMQHIQEC-VEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILI-TTRKEIVA 327 (965)
Q Consensus 258 ~~l~~~--------~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~ 327 (965)
...... ..+..++.++.+.+... ..++.-++|+|++..-+...++.+...+-.......+|+ ||....+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 111100 01111222333333221 245667999999988777788888877765444555554 44444443
Q ss_pred hh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhH
Q 002115 328 RC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAA 384 (965)
Q Consensus 328 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai 384 (965)
.. ......|.+.+++.++..+.+.+.+-..+... -++....|++.++|.+--+
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~----e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY----DQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCChHHHH
Confidence 32 23367899999999999999888764332211 1335678999999988543
No 77
>PRK08727 hypothetical protein; Validated
Probab=98.30 E-value=1.9e-05 Score=81.34 Aligned_cols=148 Identities=16% Similarity=0.080 Sum_probs=88.6
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCce
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKK 285 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 285 (965)
..+.|+|..|+|||+|++.+++. .......++|+++.+ ....+. ..+.. + .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~~~-l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DALEA-L-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHHHH-H-hcC
Confidence 46999999999999999999876 333333556776432 111111 11111 1 233
Q ss_pred EEEEEeCCCcch-hhchHh-HHhhhcC-CCCCcEEEEeecchH---------HHhhcCCcceEeCCCCChHHHHHHHHHH
Q 002115 286 FLLVLDDLWNEV-YYKWEP-FYKCLKN-GLHESKILITTRKEI---------VARCMRSTNVIYVNVLSEIECWSVFEQL 353 (965)
Q Consensus 286 ~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 353 (965)
-+||+||+.... ...|.. +...+.. ...|..||+||+... +...+.....+++++++.++-.++++++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 589999996421 123443 2222222 124667999998532 2223334568999999999999999987
Q ss_pred hccCCCccchhHHHHHHHHHHHHcCCChHhH
Q 002115 354 AFFGRSMEECEKLENMGRQIVRKCKGLPLAA 384 (965)
Q Consensus 354 ~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai 384 (965)
+....-. --++...-|++.+.|-.-.+
T Consensus 175 a~~~~l~----l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGLA----LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCCC----CCHHHHHHHHHhCCCCHHHH
Confidence 7542211 12345667888887755544
No 78
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.25 E-value=1.9e-07 Score=92.86 Aligned_cols=58 Identities=22% Similarity=0.332 Sum_probs=22.2
Q ss_pred ccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCC
Q 002115 619 NLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGT 679 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~ 679 (965)
.|.+|..||||+|. +.++-..-.+|-|.++|.|++|. ++.+ +++++|-+|..|++++|
T Consensus 327 ~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 327 ELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSN 384 (490)
T ss_pred hcccceEeecccch-hHhhhhhHhhhcCEeeeehhhhh-Hhhh-hhhHhhhhheecccccc
Confidence 33344444444443 33333323333344444444433 3333 23344444444444433
No 79
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=4.5e-05 Score=82.89 Aligned_cols=197 Identities=15% Similarity=0.135 Sum_probs=117.5
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccc--cccceEEEEcCCCCCHHHHHH
Q 002115 177 ESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKR--NFEKRIWVCVSEPFDEFRIAR 254 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~~~~~~~~ 254 (965)
-..++|.++..+.+...+... .....+.|+|..|+||||+|..+.+.-.-.. .+... .....+......+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~g-----rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREG-----KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcC-----CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHH
Confidence 356899999999999988643 2345789999999999999998877511100 01111 0011111112333
Q ss_pred HHHHH-------hcCC--C-----CCCCCHHHHHHHHHHHh-----CCceEEEEEeCCCcchhhchHhHHhhhcCCCCCc
Q 002115 255 AIIES-------LTGS--A-----SNFGEFQSLMQHIQECV-----EGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHES 315 (965)
Q Consensus 255 ~i~~~-------l~~~--~-----~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 315 (965)
.|... +... . .....+++.. .+.+++ .+++-++|+|++...+....+.+...+.....+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 33222 1000 0 0112234433 333333 3567799999998877777778888776654455
Q ss_pred EEEEee-cchHHHhh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHH
Q 002115 316 KILITT-RKEIVARC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIA 388 (965)
Q Consensus 316 ~ilvTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 388 (965)
.+|++| +...+... ......+++.+++.++..+++.+..... . ..++....|++.++|.|..+..+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ---G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555544 44333222 2235799999999999999998743211 1 112346789999999998765443
No 80
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=3.7e-05 Score=86.40 Aligned_cols=181 Identities=17% Similarity=0.137 Sum_probs=113.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccc------c------------c-cccccce
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNND------G------------V-KRNFEKR 238 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~------~------------~-~~~F~~~ 238 (965)
.++||.+..++.+.+.+... .-...+.++|+.|+||||+|+.+.+.- . + .+.+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 46899999888888877532 234578899999999999998887530 0 0 0112223
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEE
Q 002115 239 IWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKIL 318 (965)
Q Consensus 239 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 318 (965)
+.++.+....+++ .+.|++...-. -+.+++=++|+|++..-+....+.+...+....+.+++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 3444433333322 12222221100 123556689999997765667778888887766677777
Q ss_pred Eeec-chHHHhh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhH
Q 002115 319 ITTR-KEIVARC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAA 384 (965)
Q Consensus 319 vTtR-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai 384 (965)
++|. ...+... ......+.+.+++.++....+.+.+...+...+ ++....|++.++|.+-.+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 6664 3344332 234678999999999999999887654332211 234667899999877544
No 81
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=2.4e-05 Score=90.59 Aligned_cols=195 Identities=16% Similarity=0.211 Sum_probs=115.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.++||.+..++.+...+... .-...+.++|..|+||||+|+.+.+...-...+ .+.++..-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~-----rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG-----RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHHHHHH
Confidence 46899999999998888542 133457899999999999999998752110000 001111112222221
Q ss_pred HH-------hcCC-CCCCCCHHHHHHHHHHH-hCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecc-hHHH
Q 002115 258 ES-------LTGS-ASNFGEFQSLMQHIQEC-VEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRK-EIVA 327 (965)
Q Consensus 258 ~~-------l~~~-~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 327 (965)
.. +... .....++.++...+... ..+++-++|+|++...+....+.+...+-......++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 10 0000 00111222222222211 2467779999999887777788888877765556666555544 4433
Q ss_pred h-hcCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHH
Q 002115 328 R-CMRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIA 388 (965)
Q Consensus 328 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 388 (965)
. ...-...+.+.+++.++....+.+.+-......+ ++....|++.++|.+--+..+.
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e----~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE----PRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 2 2233679999999999999999876532221111 2345779999999886554443
No 82
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=4.2e-05 Score=86.46 Aligned_cols=200 Identities=19% Similarity=0.175 Sum_probs=115.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccccccc-------------------ccce
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRN-------------------FEKR 238 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 238 (965)
.+++|.+...+.+...+... .-...+.++|++|+||||+|+.+.+...-... +...
T Consensus 14 ~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 46899988888887777532 13356889999999999999999775211100 0112
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEE
Q 002115 239 IWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQE-CVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKI 317 (965)
Q Consensus 239 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 317 (965)
+.+..+.......+ +.|.+ .... -..+++-++|+|++..-.....+.+...+........+
T Consensus 89 ~el~aa~~~gid~i-R~i~~-----------------~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRD-----------------AVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHHHH-HHHHH-----------------HHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 22222221112111 11211 1111 12356779999999765445566677666654444554
Q ss_pred EEeecc-hHHHhhc-CCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCC-ChHhHHHHHHhhcC-
Q 002115 318 LITTRK-EIVARCM-RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKG-LPLAAKTIASLLQS- 393 (965)
Q Consensus 318 lvTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G-lPlai~~~~~~l~~- 393 (965)
|++|.+ ..+...+ .....+++.+++.++....+...+...+..-. ++....|++.++| ++.|+..+..+...
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l~~~~ 226 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQVWKFS 226 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 444433 3443332 33568999999999999988887643222111 2346678887754 56777777654432
Q ss_pred --CCCHHHHHHHH
Q 002115 394 --RNTEKEWQNIL 404 (965)
Q Consensus 394 --~~~~~~w~~~l 404 (965)
+-+.+....++
T Consensus 227 ~~~It~e~V~~~l 239 (472)
T PRK14962 227 EGKITLETVHEAL 239 (472)
T ss_pred CCCCCHHHHHHHH
Confidence 12455555444
No 83
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=3.4e-05 Score=88.03 Aligned_cols=195 Identities=16% Similarity=0.137 Sum_probs=112.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.+++|++..++.+.+++... ...+.+.++|+.|+||||+|+.+.+.-. |.-|... ..+..-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~-----rl~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~-~~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN-----KLTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDG-DCCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCC-CCCcccHHHHHHH
Confidence 46899999999999988543 2345788999999999999999876511 1112211 1111112222221
Q ss_pred HHhcCC-----CCCCCCHHH---HHHHHHHH-hCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEee-cchHHH
Q 002115 258 ESLTGS-----ASNFGEFQS---LMQHIQEC-VEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITT-RKEIVA 327 (965)
Q Consensus 258 ~~l~~~-----~~~~~~~~~---l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~ 327 (965)
...... .......++ +...+... ..+++-++|+|++...+...+..+...+......+.+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 111000 000111222 22222211 12344479999997765667788888776655556665554 443443
Q ss_pred h-hcCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChH-hHHHHH
Q 002115 328 R-CMRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPL-AAKTIA 388 (965)
Q Consensus 328 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPl-ai~~~~ 388 (965)
. .......+++.++++++....+...+-..+.... .+.+..+++.++|.+- |+..+-
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHH
Confidence 2 2333678999999999999888886643221111 2346778999999664 444443
No 84
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=2.5e-05 Score=90.01 Aligned_cols=179 Identities=13% Similarity=0.132 Sum_probs=110.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccc-------------------cccce
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKR-------------------NFEKR 238 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 238 (965)
.+++|.+..++.+..++... .-...+.++|..|+||||+|+.+.+...-.. .|...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 46899999999999998643 2345789999999999999998876411110 01111
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH----HhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCC
Q 002115 239 IWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQE----CVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHE 314 (965)
Q Consensus 239 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 314 (965)
+.+..+... .++.+...+.. -..+++-++|+|++...+......+...+......
T Consensus 91 lEidaAs~~---------------------gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 91 LEIDAASNT---------------------GIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred EEEeccccC---------------------CHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 122211111 12222222211 12356678999999775555566777777655455
Q ss_pred cEEEEeecch-HHHh-hcCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHH
Q 002115 315 SKILITTRKE-IVAR-CMRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKT 386 (965)
Q Consensus 315 s~ilvTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~ 386 (965)
+++|++|... .+.. ..+....+.+.+++.++....+.+.+-..+... -.+....|++.++|.+.-+..
T Consensus 150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i----d~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY----EPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHhCCCHHHHHH
Confidence 6777766432 2221 123346788999999999999988764332211 123567899999998854443
No 85
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=3.2e-05 Score=89.47 Aligned_cols=197 Identities=16% Similarity=0.159 Sum_probs=112.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccc--cceEEEEcCCCCCHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNF--EKRIWVCVSEPFDEFRIARA 255 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~ 255 (965)
.++||-+..++.+.+++... .-...+.++|..|+||||+|+.+.+.-.-.... ..... .++..-...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~-----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ-----RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 46899999888888888643 234677899999999999999886531100000 00000 01111111111
Q ss_pred HHHHhcC-----CCCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEee-cchH
Q 002115 256 IIESLTG-----SASNFGEFQSLMQHIQEC----VEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITT-RKEI 325 (965)
Q Consensus 256 i~~~l~~-----~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 325 (965)
|...-.. .......++...+.+... ..++.-++|+|++...+...++.+...+.......++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 1100000 000011222222222211 12455589999998877777888888776655566666555 4333
Q ss_pred HHh-hcCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHH
Q 002115 326 VAR-CMRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 326 v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 387 (965)
+.. .......+++.+++.++..+.+.+.+-..+...+ .+....|++.++|.+--+..+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 332 2334678999999999999999877643322111 234677888999977554433
No 86
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.22 E-value=7.3e-05 Score=83.19 Aligned_cols=183 Identities=13% Similarity=0.110 Sum_probs=110.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccc--c------------------ccccc
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGV--K------------------RNFEK 237 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~------------------~~F~~ 237 (965)
.+++|.+..++.+.+++... .-...+.++|.+|+||||+|+.+...-.- . .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 46899999999999988542 23457889999999999999888765110 0 02221
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcE
Q 002115 238 RIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQE-CVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESK 316 (965)
Q Consensus 238 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 316 (965)
+++..+...... -.+.+.. .+.. -..+++-++|+|++..-.....+.+...+......+.
T Consensus 89 -~~~~~~~~~~~~-~~~~l~~-----------------~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 -IEIDAASNNGVD-DIREILD-----------------NVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEeeccccCCHH-HHHHHHH-----------------HHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 222222111111 1112222 1111 1224556899999866544556777777755555667
Q ss_pred EEEeecchH-HHhh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHH
Q 002115 317 ILITTRKEI-VARC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIA 388 (965)
Q Consensus 317 ilvTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 388 (965)
+|++|.+.. +... ......+++.++++++...++...+-..+..- -++.+..+++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i----~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI----EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCChHHHHHHH
Confidence 666664432 2222 22356788999999999988888664322111 13457788999999887665444
No 87
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=3.4e-05 Score=88.22 Aligned_cols=183 Identities=14% Similarity=0.120 Sum_probs=111.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccccc-------------------ccccce
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVK-------------------RNFEKR 238 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 238 (965)
.++||-+..++.+.+++.... -...+.++|+.|+||||+|+.+.+.-.-. +.|...
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 468999999999999995432 34467899999999999998888742110 111122
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEE
Q 002115 239 IWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKIL 318 (965)
Q Consensus 239 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 318 (965)
+.+..+....++++ +++++.+.. .-..++.-++|+|++...+....+.+...+......+++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 33332222222221 122221110 0123566689999998766667788888777665667776
Q ss_pred Eeecc-hHHHhh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHH
Q 002115 319 ITTRK-EIVARC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKT 386 (965)
Q Consensus 319 vTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~ 386 (965)
++|.+ ..+... ......+++.+++.++....+.+.+-..+...+ .+....|++.++|.+--+..
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHH
Confidence 65543 333222 233567889999999988877766533222111 22356788899998754443
No 88
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=6e-05 Score=82.40 Aligned_cols=197 Identities=13% Similarity=0.037 Sum_probs=115.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEE---EEcCCCCCHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIW---VCVSEPFDEFRIAR 254 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w---v~vs~~~~~~~~~~ 254 (965)
.+++|.++.++.+.+.+... .-...+.++|+.|+||+|+|..+.+.--=......... ...-..+..-...+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSG-----RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 47899999999999988643 23457889999999999999777664110000000000 00000000001111
Q ss_pred HHHHHhcCC---------C-----CCCCCHHHHHHHHHHHh-----CCceEEEEEeCCCcchhhchHhHHhhhcCCCCCc
Q 002115 255 AIIESLTGS---------A-----SNFGEFQSLMQHIQECV-----EGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHES 315 (965)
Q Consensus 255 ~i~~~l~~~---------~-----~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 315 (965)
.|...-... . .....+++.. .+.+.+ .+.+-++|+||+...+......+...+.....++
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 221111000 0 0112244433 233333 2567799999998877777888888887665667
Q ss_pred EEEEeecch-HHHhh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHH
Q 002115 316 KILITTRKE-IVARC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIA 388 (965)
Q Consensus 316 ~ilvTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 388 (965)
.+|++|... .+... ......+.+.+++.++..+++...... ... +....++..++|.|..+..+.
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~----~~~----~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD----LPD----DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc----CCH----HHHHHHHHHcCCCHHHHHHHh
Confidence 777777654 33222 233679999999999999999875311 111 112678999999998765543
No 89
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.20 E-value=2.7e-06 Score=90.76 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=67.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCC--CHHHHHHHHHHHhcCCCC
Q 002115 188 NELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPF--DEFRIARAIIESLTGSAS 265 (965)
Q Consensus 188 ~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~ 265 (965)
-++++.+..- +.-....|+|.+|+||||||+++|++...+ +|+..+||.+++.. ++.++++.|...+-....
T Consensus 157 ~rvID~l~PI-----GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~ 230 (416)
T PRK09376 157 TRIIDLIAPI-----GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF 230 (416)
T ss_pred eeeeeeeccc-----ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC
Confidence 3555655432 233478899999999999999999985444 89999999999887 777788877633222222
Q ss_pred CCCCHHH------HHHHHHHH-hCCceEEEEEeCCCc
Q 002115 266 NFGEFQS------LMQHIQEC-VEGKKFLLVLDDLWN 295 (965)
Q Consensus 266 ~~~~~~~------l~~~l~~~-l~~kr~LlVlDdv~~ 295 (965)
+.....+ ....-... -.+++.+|++|++..
T Consensus 231 d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 231 DEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 2211111 11111111 258999999999954
No 90
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.20 E-value=3.6e-05 Score=76.74 Aligned_cols=91 Identities=13% Similarity=0.062 Sum_probs=65.1
Q ss_pred CceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecch-HHHhh-cCCcceEeCCCCChHHHHHHHHHHhccCCCc
Q 002115 283 GKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKE-IVARC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSM 360 (965)
Q Consensus 283 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 360 (965)
+.+-++|+|++.......++.+...+......+.+|++|++. .+... ......+++.+++.++..+.+.+. + -
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g-i-- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G-I-- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C-C--
Confidence 566789999997765666778888887766667777777643 22221 123568999999999999988876 1 1
Q ss_pred cchhHHHHHHHHHHHHcCCChHh
Q 002115 361 EECEKLENMGRQIVRKCKGLPLA 383 (965)
Q Consensus 361 ~~~~~l~~~~~~i~~~c~GlPla 383 (965)
. ++.+..|++.++|.|..
T Consensus 170 -~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 -S----EEAAELLLALAGGSPGA 187 (188)
T ss_pred -C----HHHHHHHHHHcCCCccc
Confidence 1 24578899999998853
No 91
>PRK09087 hypothetical protein; Validated
Probab=98.20 E-value=3e-05 Score=79.08 Aligned_cols=141 Identities=14% Similarity=0.131 Sum_probs=85.3
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGK 284 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 284 (965)
.+.+.|+|..|+|||+|++.+++.. . ..|++.. .+..+++..+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~--~-----~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS--D-----ALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc--C-----CEEecHH------HcchHHHHhh---------------------hc-
Confidence 3578999999999999999988752 1 1244321 1222222111 11
Q ss_pred eEEEEEeCCCcchhhchHhHHhhhcC-CCCCcEEEEeecc---------hHHHhhcCCcceEeCCCCChHHHHHHHHHHh
Q 002115 285 KFLLVLDDLWNEVYYKWEPFYKCLKN-GLHESKILITTRK---------EIVARCMRSTNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 285 r~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
-+|++||+..... .-+.+...+.. ...|..||+|++. ......+.....++++++++++-.+++++++
T Consensus 89 -~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 2788899954211 11223333322 1235679998874 2233445567899999999999999999887
Q ss_pred ccCCCccchhHHHHHHHHHHHHcCCChHhHHH
Q 002115 355 FFGRSMEECEKLENMGRQIVRKCKGLPLAAKT 386 (965)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~ 386 (965)
-...- .. -+++..-|++.+.|..-++..
T Consensus 167 ~~~~~-~l---~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 167 ADRQL-YV---DPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHcCC-CC---CHHHHHHHHHHhhhhHHHHHH
Confidence 43221 11 134566778888777766654
No 92
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=4.4e-05 Score=85.39 Aligned_cols=200 Identities=15% Similarity=0.147 Sum_probs=113.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEE-cCCCCCHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVC-VSEPFDEFRIARAI 256 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i 256 (965)
.+++|.+..++.+..++... .-...+.++|+.|+||||+|+.+.+.-.-...+....|.. +..++..-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 46899999998888888532 1344688999999999999999877521111111111110 01111111111222
Q ss_pred HHHhcCC-----CCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEee-cchHH
Q 002115 257 IESLTGS-----ASNFGEFQSLMQHIQEC----VEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITT-RKEIV 326 (965)
Q Consensus 257 ~~~l~~~-----~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v 326 (965)
....... .......+++.+..... ..+++-++|+|++.......++.+...+....+.+.+|++| +...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 1110000 00111133333222211 23556688999997765567888888887666667766555 44444
Q ss_pred Hhhc-CCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHH
Q 002115 327 ARCM-RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKT 386 (965)
Q Consensus 327 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~ 386 (965)
...+ .....+++.++++++....+...+-..+..- -.+.+..|++.++|.+--+..
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i----~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISV----DADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 3322 2246789999999999888887653222111 134577899999997754433
No 93
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.18 E-value=1.3e-05 Score=94.85 Aligned_cols=169 Identities=17% Similarity=0.232 Sum_probs=96.2
Q ss_pred CccccchHHHH---HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHH
Q 002115 178 SEIFGREEEKN---ELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIAR 254 (965)
Q Consensus 178 ~~~vGr~~~~~---~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 254 (965)
.+|+|.+..+. .+...+.. .....+.++|++|+||||||+.+++. ...+|. .++.+. ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~---- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVK---- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhH----
Confidence 46889887764 34444432 24456789999999999999999986 444441 111110 0011
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHh--CCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEe--ecchH--HHh
Q 002115 255 AIIESLTGSASNFGEFQSLMQHIQECV--EGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILIT--TRKEI--VAR 328 (965)
Q Consensus 255 ~i~~~l~~~~~~~~~~~~l~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT--tR~~~--v~~ 328 (965)
+...........+ .+++.+|||||++.-+...++.+...+. .|+.++|+ |.+.. +..
T Consensus 92 --------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 92 --------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred --------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 1111111121111 2567899999997654445556655443 34555553 33321 222
Q ss_pred h-cCCcceEeCCCCChHHHHHHHHHHhcc------CCCccchhHHHHHHHHHHHHcCCChH
Q 002115 329 C-MRSTNVIYVNVLSEIECWSVFEQLAFF------GRSMEECEKLENMGRQIVRKCKGLPL 382 (965)
Q Consensus 329 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~------~~~~~~~~~l~~~~~~i~~~c~GlPl 382 (965)
. ......+.+.+++.++...++.+.+-. ..... --++....|++.+.|..-
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~---I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVD---LEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccC---CCHHHHHHHHHhCCCCHH
Confidence 1 222568999999999999999876531 11111 113445678888887543
No 94
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.17 E-value=2e-05 Score=81.01 Aligned_cols=157 Identities=17% Similarity=0.097 Sum_probs=99.1
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVE 282 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 282 (965)
....-+.+||++|.||||||+.+.+..+... ..||..|-...-..-.++|.++-.. ...+.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~ 220 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSLT 220 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhhh
Confidence 3667888999999999999999998743332 4477777655555555666554221 11346
Q ss_pred CceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEE--eecchHH---HhhcCCcceEeCCCCChHHHHHHHHHHhc--
Q 002115 283 GKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILI--TTRKEIV---ARCMRSTNVIYVNVLSEIECWSVFEQLAF-- 355 (965)
Q Consensus 283 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~~~-- 355 (965)
++|.+|.+|.|..-+..+ --..||.-..|.-++| ||-+... +..+....++.|+.|+.++-..++.+..-
T Consensus 221 krkTilFiDEiHRFNksQ---QD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQ---QDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhh---hhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 789999999997643222 1234555566777666 6665432 22345578999999999999998877321
Q ss_pred c-CCC---ccchh---HHHHHHHHHHHHcCCCh
Q 002115 356 F-GRS---MEECE---KLENMGRQIVRKCKGLP 381 (965)
Q Consensus 356 ~-~~~---~~~~~---~l~~~~~~i~~~c~GlP 381 (965)
+ ++. .-..+ --..+..-++..|.|-.
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 1 111 11111 22345566777777754
No 95
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.17 E-value=4.4e-07 Score=90.31 Aligned_cols=125 Identities=28% Similarity=0.290 Sum_probs=98.6
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhc
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIEN 619 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~ 619 (965)
+.+..+.++.|.+..+..+.. -.+.+|.|.++.|....+ . .+..+.+|..|||++|.+ ..+-..-.+
T Consensus 284 q~LtelDLS~N~I~~iDESvK-L~Pkir~L~lS~N~i~~v----~-nLa~L~~L~~LDLS~N~L-------s~~~Gwh~K 350 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVK-LAPKLRRLILSQNRIRTV----Q-NLAELPQLQLLDLSGNLL-------AECVGWHLK 350 (490)
T ss_pred hhhhhccccccchhhhhhhhh-hccceeEEeccccceeee----h-hhhhcccceEeecccchh-------HhhhhhHhh
Confidence 566777888888876666655 789999999999874322 2 278899999999996554 343333446
Q ss_pred cCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccC--ccccCCCCccEeecCCCc
Q 002115 620 LLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELP--QGIGKLRKLMYLENDGTY 680 (965)
Q Consensus 620 L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP--~~i~~L~~L~~L~l~~~~ 680 (965)
|-+.+.|.|++|. +..+.. +++|++|..||+++|+ ++.+- .+|++|+-|++|.+.+|.
T Consensus 351 LGNIKtL~La~N~-iE~LSG-L~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 351 LGNIKTLKLAQNK-IETLSG-LRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hcCEeeeehhhhh-Hhhhhh-hHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC
Confidence 7889999999998 888875 9999999999999998 77653 468999999999999883
No 96
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.16 E-value=6.1e-05 Score=77.68 Aligned_cols=152 Identities=15% Similarity=0.122 Sum_probs=89.5
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGK 284 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 284 (965)
...+.|+|+.|+|||+|++.+++. ....-..+.|+.+..... ...+..+.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~~~----- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------FVPEVLEGMEQ----- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------hhHHHHHHhhh-----
Confidence 347899999999999999999986 222223455666543100 00111111111
Q ss_pred eEEEEEeCCCcch-hhchHhHH-hhhcCC-CCC-cEEEEeecchH---------HHhhcCCcceEeCCCCChHHHHHHHH
Q 002115 285 KFLLVLDDLWNEV-YYKWEPFY-KCLKNG-LHE-SKILITTRKEI---------VARCMRSTNVIYVNVLSEIECWSVFE 351 (965)
Q Consensus 285 r~LlVlDdv~~~~-~~~~~~l~-~~l~~~-~~g-s~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~ 351 (965)
--+|++||+.... ...|+... ..+... ..| .++|+||+... ....+....++++.++++++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2378999996532 23455422 323221 123 47999997542 33335556799999999999999998
Q ss_pred HHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHH
Q 002115 352 QLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 352 ~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 387 (965)
+++.... .. --+++..-|++.+.|..-++..+
T Consensus 178 ~~a~~~~-~~---l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 178 LRARLRG-FE---LPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHcC-CC---CCHHHHHHHHHhhcCCHHHHHHH
Confidence 8664321 11 12345677888888765554433
No 97
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=6.1e-05 Score=83.04 Aligned_cols=193 Identities=12% Similarity=0.054 Sum_probs=109.7
Q ss_pred CccccchHHHHHHHHHHhcCCCC----CCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSK----EQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIA 253 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 253 (965)
++++|.+..++.+..++...... ...-...+.++|+.|+||||+|+.+...-.-... . + .++..-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~--~--~----~~Cg~C~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDP--D--E----PGCGECRAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCC--C--C----CCCCCCHHH
Confidence 36889999999999998754310 0113467889999999999999988653100000 0 0 000000000
Q ss_pred HHHHHHhcC------CCCCCCCHHHHHH---HHHH-HhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecc
Q 002115 254 RAIIESLTG------SASNFGEFQSLMQ---HIQE-CVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRK 323 (965)
Q Consensus 254 ~~i~~~l~~------~~~~~~~~~~l~~---~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 323 (965)
+.+...-.. .......++++.. .+.. -..+++-++|+|++...+......+...+.....+..+|++|.+
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 111000000 0000111222222 1111 11355568888999886666667777777665566766666655
Q ss_pred -hHHHhh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHH
Q 002115 324 -EIVARC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 324 -~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 387 (965)
..+... ......+.+.+++.++..+.+..... .. .+.+..++..++|.|..+..+
T Consensus 157 ~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 157 PEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----VD----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred hHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 333322 23367999999999999988875321 11 234677899999999766444
No 98
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.15 E-value=4.4e-05 Score=78.76 Aligned_cols=153 Identities=12% Similarity=0.096 Sum_probs=87.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCC
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEG 283 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 283 (965)
....+.|+|..|+|||+||+.+++... +.. ...++++..+.. ..+ ... .
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~------~~~----------------------~~~-~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPL------LAF----------------------DFD-P 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhH------HHH----------------------hhc-c
Confidence 345788999999999999999998621 111 234455443311 000 011 2
Q ss_pred ceEEEEEeCCCcchhhchHhHHhhhcCC-CCCc-EEEEeecchHHHh--------hcCCcceEeCCCCChHHHHHHHHHH
Q 002115 284 KKFLLVLDDLWNEVYYKWEPFYKCLKNG-LHES-KILITTRKEIVAR--------CMRSTNVIYVNVLSEIECWSVFEQL 353 (965)
Q Consensus 284 kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~ilvTtR~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~ 353 (965)
..-+||+||+...+...-+.+...+... ..+. .||+|++...... .+.....+++.++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 2347899999653322222344444321 2333 4667766433221 2223468899999998877777654
Q ss_pred hccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhh
Q 002115 354 AFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLL 391 (965)
Q Consensus 354 ~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l 391 (965)
+-... ... -++....+++.+.|.+..+..+...+
T Consensus 170 ~~~~~-v~l---~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERG-LQL---ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcC-CCC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 32211 111 13456778888899888877665554
No 99
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=8.8e-05 Score=86.08 Aligned_cols=197 Identities=14% Similarity=0.123 Sum_probs=114.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccccccccc--ceEEEEcCCCCCHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFE--KRIWVCVSEPFDEFRIARA 255 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~ 255 (965)
.+++|.+..++.+.+++... .-...+.++|..|+||||+|+.+.+.-.-..... ...+ ..+..-.-.+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHH
Confidence 46899999999999988643 2345788999999999999999987521111000 0000 00111111122
Q ss_pred HHHHhcCC-----CCCCCCHHH---HHHHHHH-HhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEee-cchH
Q 002115 256 IIESLTGS-----ASNFGEFQS---LMQHIQE-CVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITT-RKEI 325 (965)
Q Consensus 256 i~~~l~~~-----~~~~~~~~~---l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 325 (965)
|...-... ......+++ +...++. -..+++-++|+|++...+....+.+...+-.-..++++|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 22111100 001112233 2222221 123455689999997765566777887777665667776655 3333
Q ss_pred HHhh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHH
Q 002115 326 VARC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 326 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 387 (965)
+... ......+++..++.++....+.+.+-....... .+....|++.++|.+.-+...
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 3322 233578999999999999999887643322111 235677899999988655443
No 100
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.12 E-value=3.2e-05 Score=78.30 Aligned_cols=183 Identities=15% Similarity=0.112 Sum_probs=116.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceE-EEEcCCCCCHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRI-WVCVSEPFDEFRIARAI 256 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~~~~~i 256 (965)
.+++|.+..++-+.+.+.. ....+...+|++|.|||+-|..+...--=.+.|.+++ =.++|...... +.+.
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh-
Confidence 4689999999999988865 2567899999999999999988876522234565554 34455433222 0000
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHh--CCce-EEEEEeCCCcchhhchHhHHhhhcCCCCCcEEE-EeecchHHHhh-cC
Q 002115 257 IESLTGSASNFGEFQSLMQHIQECV--EGKK-FLLVLDDLWNEVYYKWEPFYKCLKNGLHESKIL-ITTRKEIVARC-MR 331 (965)
Q Consensus 257 ~~~l~~~~~~~~~~~~l~~~l~~~l--~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTtR~~~v~~~-~~ 331 (965)
...+...+.....+.. ..++ -.||||+++....+.|..++..+......++.+ ||+--..+... ..
T Consensus 108 ---------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 108 ---------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred ---------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 0111111111111000 0223 378999999988899999999988876666654 45443332222 22
Q ss_pred CcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCCh
Q 002115 332 STNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLP 381 (965)
Q Consensus 332 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 381 (965)
....++.++|.+++..+-++..+-..+...+ .+..+.|++.++|--
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGDL 224 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCcH
Confidence 3568899999999999999888855444333 234677888888843
No 101
>PF14516 AAA_35: AAA-like domain
Probab=98.11 E-value=0.0005 Score=74.81 Aligned_cols=202 Identities=14% Similarity=0.117 Sum_probs=121.7
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCC-----CCHH
Q 002115 176 DESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEP-----FDEF 250 (965)
Q Consensus 176 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~ 250 (965)
+.+.+|+|...-+++.+.+..+ -..+.|.|+-.+|||+|...+.+..+.. .| .++++++..- .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHH
Confidence 3455789997777788877543 2389999999999999999998763322 33 4557776542 3456
Q ss_pred HHHHHHHHHhcCCCC-----------CCCCHHHHHHHHHHHh---CCceEEEEEeCCCcchh--hchHhHHhhhc----C
Q 002115 251 RIARAIIESLTGSAS-----------NFGEFQSLMQHIQECV---EGKKFLLVLDDLWNEVY--YKWEPFYKCLK----N 310 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~-----------~~~~~~~l~~~l~~~l---~~kr~LlVlDdv~~~~~--~~~~~l~~~l~----~ 310 (965)
..++.++..+...-. ...........+.+++ .+++.+|++|+++.... ...+++...++ .
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 566666555543210 1112233344444433 26899999999965211 11122322222 1
Q ss_pred CC----CCcEEEEeecchHHHhh-------cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCC
Q 002115 311 GL----HESKILITTRKEIVARC-------MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKG 379 (965)
Q Consensus 311 ~~----~gs~ilvTtR~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G 379 (965)
.. ..+-.+|.......... ......++|.+++.+|...|...+-.. ...+ ..++|...+||
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~~~----~~~~l~~~tgG 231 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FSQE----QLEQLMDWTGG 231 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CCHH----HHHHHHHHHCC
Confidence 11 12222332222211111 122458899999999999999876422 1111 27889999999
Q ss_pred ChHhHHHHHHhhcCC
Q 002115 380 LPLAAKTIASLLQSR 394 (965)
Q Consensus 380 lPlai~~~~~~l~~~ 394 (965)
+|.-+..++..+..+
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999764
No 102
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=6.8e-05 Score=86.39 Aligned_cols=181 Identities=16% Similarity=0.128 Sum_probs=108.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccccc-------------------ccccce
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVK-------------------RNFEKR 238 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 238 (965)
.+++|.+..++.+..++.... -...+.++|..|+||||+|+.+.+.-.-. +.|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999999886432 33567899999999999999987652110 011112
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEE
Q 002115 239 IWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKIL 318 (965)
Q Consensus 239 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 318 (965)
+++..+....... .+++++.+.. .-..+++-++|+|++...+....+.+...+......+.+|
T Consensus 91 ~ei~~~~~~~vd~-ir~l~~~~~~----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 91 IEVDAASNTQVDA-MRELLDNAQY----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred eEeeccccCCHHH-HHHHHHHHhh----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 2222221111111 1122211100 0123567799999998766666777888777655566666
Q ss_pred Eeecc-hHHHhh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhH
Q 002115 319 ITTRK-EIVARC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAA 384 (965)
Q Consensus 319 vTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai 384 (965)
++|.+ +.+... ......+++.+++.++....+.+.+-..+... -++....|++.++|.+--+
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~----~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF----DATALQLLARAAAGSMRDA 217 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 65543 332211 22256889999999999988877653322111 1234577899999977533
No 103
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.10 E-value=3.2e-06 Score=66.38 Aligned_cols=57 Identities=30% Similarity=0.557 Sum_probs=41.2
Q ss_pred CCCcEEEeCCccCccccch-hhhccCCCcEEeccCcccccccCc-cccCCCCccEeecCCC
Q 002115 621 LHLKYLNLAHQREIEKLPE-TLCELYNLEHLDISYCRNLRELPQ-GIGKLRKLMYLENDGT 679 (965)
Q Consensus 621 ~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~LdL~~~~~l~~lP~-~i~~L~~L~~L~l~~~ 679 (965)
++|++|++++|. +..+|. .|.++++|++|++++|. +..+|. .|..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 367777777777 777774 66777888888888777 565554 4677788888887776
No 104
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.10 E-value=0.00011 Score=75.84 Aligned_cols=201 Identities=17% Similarity=0.116 Sum_probs=121.8
Q ss_pred Cccccch---HHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccccc----ccccceEEEEcCCCCCHH
Q 002115 178 SEIFGRE---EEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVK----RNFEKRIWVCVSEPFDEF 250 (965)
Q Consensus 178 ~~~vGr~---~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~ 250 (965)
+.++|-. +.++++.+.+..+. .....-+.|||..|+|||++++++....-.. ..--.++.|.+...++..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 3455543 34555555555442 3456679999999999999999998642111 011257788889999999
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCC-ceEEEEEeCCCcch------hhchHhHHhhhcCCCCCcEEEEeecc
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQHIQECVEG-KKFLLVLDDLWNEV------YYKWEPFYKCLKNGLHESKILITTRK 323 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~-kr~LlVlDdv~~~~------~~~~~~l~~~l~~~~~gs~ilvTtR~ 323 (965)
.+...|+.+++...........+.......++. +-=+||+|.+.+-- ....-.....+.+.-.=+-|.|-|+.
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 999999999998876666666666665565543 34488999996521 11122223333333344566776665
Q ss_pred hHHHhhcC-----CcceEeCCCCChH-HHHHHHHHHh--ccCCCccchhHHHHHHHHHHHHcCCChH
Q 002115 324 EIVARCMR-----STNVIYVNVLSEI-ECWSVFEQLA--FFGRSMEECEKLENMGRQIVRKCKGLPL 382 (965)
Q Consensus 324 ~~v~~~~~-----~~~~~~l~~L~~~-~~~~lf~~~~--~~~~~~~~~~~l~~~~~~i~~~c~GlPl 382 (965)
..-+-..+ -..++.+.....+ +...|+.... ..-..+. .-...++++.|...++|+.=
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S-~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPS-NLASPELARRIHERSEGLIG 256 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHcCCchH
Confidence 43322111 1346667766654 4555554432 1112111 12346789999999999763
No 105
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.09 E-value=2.7e-07 Score=96.49 Aligned_cols=144 Identities=19% Similarity=0.350 Sum_probs=97.7
Q ss_pred CCCCceEEEeeecCCCCCCChhhHh--hccCCcEEEEecCCCCCCCCC---CCCCCCcceeeecCCCCceEeCccccCCC
Q 002115 788 PPNLKELRIYQYRGRRNVVPKIWIT--SLTNLRVLSLFECRNCEHLPP---LGKLPSIEVLEIYGVQSVKRVGNEFLGVE 862 (965)
Q Consensus 788 ~~~L~~L~L~~~~~~~~~~p~~~~~--~l~~L~~L~L~~~~~~~~lp~---l~~L~~L~~L~L~~~~~l~~~~~~~~~~~ 862 (965)
++-+.++++..|....+. . -|.. .+..|+.|+.++|....+.+. -.+.++|+.|.+.+|..+...+....+.
T Consensus 267 ~~~i~~lnl~~c~~lTD~-~-~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r- 343 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDE-D-LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR- 343 (483)
T ss_pred ChHhhccchhhhccccch-H-HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc-
Confidence 344555665566444321 1 2322 688999999999976554333 4578999999999999776655544442
Q ss_pred CCCCCccccCCcccccccccccccccccCcccccccccccCcccceEeeccCccCcCC-----CcCCCCCCCCCeEeEcC
Q 002115 863 SDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKAL-----PDRLLQKTTLQALTIGE 937 (965)
Q Consensus 863 ~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l-----p~~l~~l~~L~~L~l~~ 937 (965)
..+.|+.|++..|.....-.+ ..-..++|.|++|.|+.|..+... -.+-..+..|+.+++.+
T Consensus 344 ---------n~~~Le~l~~e~~~~~~d~tL----~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n 410 (483)
T KOG4341|consen 344 ---------NCPHLERLDLEECGLITDGTL----ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDN 410 (483)
T ss_pred ---------CChhhhhhcccccceehhhhH----hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecC
Confidence 689999999888753322211 122237999999999999876543 33344567899999999
Q ss_pred CcchHHhhcc
Q 002115 938 CPILEERCRK 947 (965)
Q Consensus 938 c~~l~~~~~~ 947 (965)
||.+++....
T Consensus 411 ~p~i~d~~Le 420 (483)
T KOG4341|consen 411 CPLITDATLE 420 (483)
T ss_pred CCCchHHHHH
Confidence 9998876543
No 106
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=0.00014 Score=81.10 Aligned_cols=181 Identities=16% Similarity=0.174 Sum_probs=105.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccc------cccccceE-EEEcCCCCCHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGV------KRNFEKRI-WVCVSEPFDEF 250 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~------~~~F~~~~-wv~vs~~~~~~ 250 (965)
.+++|.+...+.+.+.+... .-.+.+.++|++|+||||+|+.+.+...- ...|...+ -+......+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 46899999999999998542 23468889999999999999998775211 01121111 11111111111
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEee-cchHHHh-
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITT-RKEIVAR- 328 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~~- 328 (965)
. .+.+++++... -..+++-++|+|++.......++.+...+......+.+|++| ....+..
T Consensus 92 ~-i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 92 D-IRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred H-HHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 1 11222211100 112455689999986654455777776665544455666555 3322222
Q ss_pred hcCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhH
Q 002115 329 CMRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAA 384 (965)
Q Consensus 329 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai 384 (965)
.......+++.++++++....+...+...+-.-. .+....+++.++|.+-.+
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALRDA 206 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 1233468899999999999888887643322111 245677888899866533
No 107
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.07 E-value=4.6e-05 Score=84.49 Aligned_cols=180 Identities=18% Similarity=0.141 Sum_probs=100.4
Q ss_pred CCCccccchHHHHHHHHHHhcCCCC-------CCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCC
Q 002115 176 DESEIFGREEEKNELVNRLLCESSK-------EQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFD 248 (965)
Q Consensus 176 ~~~~~vGr~~~~~~i~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 248 (965)
...++.|+++.+++|.+.+...-.. +-...+-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch---
Confidence 3457899999999999877432110 1123556899999999999999999986 43343 22211
Q ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hCCceEEEEEeCCCcch-----------hh---chHhHHhhhcC--C
Q 002115 249 EFRIARAIIESLTGSASNFGEFQSLMQHIQEC-VEGKKFLLVLDDLWNEV-----------YY---KWEPFYKCLKN--G 311 (965)
Q Consensus 249 ~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~-----------~~---~~~~l~~~l~~--~ 311 (965)
..+. ....+ ........+.+. -...+.+|++|+++.-. .. .+..+...+.. .
T Consensus 190 -~~l~----~~~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 -SELV----RKYIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred -HHHH----HHhhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 1111 11100 011112222222 23467899999986421 11 12222222221 1
Q ss_pred CCCcEEEEeecchH-HHhhc----CCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCCh
Q 002115 312 LHESKILITTRKEI-VARCM----RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLP 381 (965)
Q Consensus 312 ~~gs~ilvTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 381 (965)
..+.+||.||.... +...+ .-...+.+...+.++..++|+.++....-. ..-+ ...+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 24567888886532 11111 124578899999999999999876443211 1112 345677776653
No 108
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.07 E-value=1.2e-05 Score=85.28 Aligned_cols=269 Identities=21% Similarity=0.194 Sum_probs=170.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccc-cceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNF-EKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVE 282 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 282 (965)
..+-|.++|.|||||||++-.+.. ++.-| +.+.+|....-.+...+.......++....+ .+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 457899999999999999999886 45667 4566777766666666666666556544322 2334445666677
Q ss_pred CceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchHHHhhcCCcceEeCCCCChH-HHHHHHHHHhccCCCc-
Q 002115 283 GKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEIVARCMRSTNVIYVNVLSEI-ECWSVFEQLAFFGRSM- 360 (965)
Q Consensus 283 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~~~- 360 (965)
++|.++|+||...- .+.-..+...+..+.+.-.|+.|+|..... .......+.+|+.. ++-++|...+......
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999998432 223334555566666667788899875432 33556777888765 6888887765332221
Q ss_pred cchhHHHHHHHHHHHHcCCChHhHHHHHHhhcCCCCHHHHHHHHhhhhhhhhh-------hhhhhhhHHHHhhcCCcHhH
Q 002115 361 EECEKLENMGRQIVRKCKGLPLAAKTIASLLQSRNTEKEWQNILESEIWELEE-------VERGLLAPLLLSYNELPSKI 433 (965)
Q Consensus 361 ~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~-------~~~~i~~~l~~sy~~L~~~l 433 (965)
.-...-.....+|.++..|.|++|...++..++-. ..+-...++.....+.+ -.....+.+..||.=|..-.
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 11122234578899999999999999998887653 22222222221111111 12346788999999999988
Q ss_pred HHHHhHhcccCCCceecHHHHHHHHHhCCccccCCCCcHHHHHHHHHHHHHhCCCccc
Q 002115 434 KQCFTYCAIFPKDYQIQKKELINLWMAQGYLSKKGTKEMEDIGEEYFNILASRSFFQD 491 (965)
Q Consensus 434 k~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~~~~~l~~L~~~sl~~~ 491 (965)
+--|--++.|.-.+... ...|.+-|-... ........-+..+++.+++..
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~a 291 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYLVLLALTLLVDKSLVVA 291 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCccc----cchHHHHHHHHHHhhccchhh
Confidence 88899999987775544 234444442110 011223334567777777654
No 109
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=0.0001 Score=88.61 Aligned_cols=191 Identities=14% Similarity=0.085 Sum_probs=111.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.+++|.+..++.|..++.... -...+.++|..|+||||+|+.+.+...-...... ..+..-...+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHH
Confidence 468999999999999886431 3356889999999999999998765210000000 0000000011111
Q ss_pred HHhc-------CCCCCCCCHHHHHH---HHHH-HhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeec-chH
Q 002115 258 ESLT-------GSASNFGEFQSLMQ---HIQE-CVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTR-KEI 325 (965)
Q Consensus 258 ~~l~-------~~~~~~~~~~~l~~---~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR-~~~ 325 (965)
..-. ........++++.. .+.. -..+++-++|||++...+...++.|+..+..-...+.+|++|. ...
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 0000 00000111222222 1111 1235566899999988777788888888887666667666554 334
Q ss_pred HHhh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhH
Q 002115 326 VARC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAA 384 (965)
Q Consensus 326 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai 384 (965)
+... ......|++..++.++...++.+.+-...... -.+....|++.++|.+..+
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i----d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV----EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 4332 23367899999999999888877653222111 1234567899999988444
No 110
>PRK05642 DNA replication initiation factor; Validated
Probab=98.06 E-value=0.00012 Score=75.42 Aligned_cols=152 Identities=18% Similarity=0.200 Sum_probs=90.3
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGK 284 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 284 (965)
...+.|+|..|+|||.|++.+++.. ...-..++|++..+ +... ... +.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~------~~~~--------------~~~----~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAE------LLDR--------------GPE----LLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHH------HHhh--------------hHH----HHHhhhhC
Confidence 3578999999999999999998752 22223456776532 1111 011 22222222
Q ss_pred eEEEEEeCCCcch-hhchHh-HHhhhcC-CCCCcEEEEeecchHH---------HhhcCCcceEeCCCCChHHHHHHHHH
Q 002115 285 KFLLVLDDLWNEV-YYKWEP-FYKCLKN-GLHESKILITTRKEIV---------ARCMRSTNVIYVNVLSEIECWSVFEQ 352 (965)
Q Consensus 285 r~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTtR~~~v---------~~~~~~~~~~~l~~L~~~~~~~lf~~ 352 (965)
. +||+||+.... ...|+. +...+.. ...|..+|+||+...- ...+....+++++++++++-...++.
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 68899996421 234544 4444432 2346689998875322 11233346889999999999999987
Q ss_pred HhccCCCccchhHHHHHHHHHHHHcCCChHhHHHH
Q 002115 353 LAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 353 ~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 387 (965)
++.... ..-+ +++..-|++.+.|..-.+..+
T Consensus 178 ka~~~~-~~l~---~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 178 RASRRG-LHLT---DEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHcC-CCCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 664322 1111 356777888888766555443
No 111
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.06 E-value=0.00012 Score=78.53 Aligned_cols=213 Identities=14% Similarity=0.106 Sum_probs=127.6
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHH
Q 002115 176 DESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARA 255 (965)
Q Consensus 176 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 255 (965)
.+...+||+.|++.+..|+...-+ ....+-+.|.|.+|.|||.+...|+.+..-...=..++++..-.-....+++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 456789999999999999875432 345678999999999999999999987321111124567766655677888888
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhCC--ceEEEEEeCCCcchhhchHhHHhhhcC-CCCCcEEEEeecchHH--Hh--
Q 002115 256 IIESLTGSASNFGEFQSLMQHIQECVEG--KKFLLVLDDLWNEVYYKWEPFYKCLKN-GLHESKILITTRKEIV--AR-- 328 (965)
Q Consensus 256 i~~~l~~~~~~~~~~~~l~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v--~~-- 328 (965)
|...+...........+....+.++..+ +.+|+|+|.++.-....-..+...|.. .-+++++|+.--.... ..
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 8888732221112224555666666643 368999999865322222223333322 2356666654322111 11
Q ss_pred ---h----cCCcceEeCCCCChHHHHHHHHHHhccCCCc-cchhHHHHHHHHHHHHcCCChHhHHHHHHh
Q 002115 329 ---C----MRSTNVIYVNVLSEIECWSVFEQLAFFGRSM-EECEKLENMGRQIVRKCKGLPLAAKTIASL 390 (965)
Q Consensus 329 ---~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~l~~~~~~i~~~c~GlPlai~~~~~~ 390 (965)
. -.....+...|.+.++-.++|..+.-..... ..+..++-.|++++...|-+--|+.+.-+.
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~a 375 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRA 375 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 0 1124577889999999999999886433221 122344444444444445555555544433
No 112
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00014 Score=83.54 Aligned_cols=198 Identities=16% Similarity=0.142 Sum_probs=113.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.+++|.+..++.|...+... .-...+.++|..|+||||+|+.+.+...-....+ ...++.-...+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHh
Confidence 46899888888888887532 1245788999999999999998887521110000 00111111111111
Q ss_pred HHhcCC-----CCCCCCHHH---HHHHHHH-HhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecc-hHHH
Q 002115 258 ESLTGS-----ASNFGEFQS---LMQHIQE-CVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRK-EIVA 327 (965)
Q Consensus 258 ~~l~~~-----~~~~~~~~~---l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 327 (965)
...... ......++. +...+.. -..+++-+||+|++.......++.|...+........+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 110000 000011222 2222211 12356679999999776666677788777654445566665544 4433
Q ss_pred hh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCCh-HhHHHHHHhh
Q 002115 328 RC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLP-LAAKTIASLL 391 (965)
Q Consensus 328 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP-lai~~~~~~l 391 (965)
.. ......+++.+++.++....+...+....... -.+.++.|++.++|.+ .|+..+..++
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i----d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY----DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22 23356889999999999999888664332211 1235677888999955 6777666544
No 113
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00021 Score=82.50 Aligned_cols=198 Identities=14% Similarity=0.146 Sum_probs=114.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.+++|.+..++.+..++... .-...+.++|..|+||||+|+.+.+.-.-....+ + .+++.-...+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhh
Confidence 46899999999999998643 2345678999999999999999886511000000 0 0011001111111
Q ss_pred HH---------hcCC-CCCCCCHHHHHHHHHHH-hCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEee-cchH
Q 002115 258 ES---------LTGS-ASNFGEFQSLMQHIQEC-VEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITT-RKEI 325 (965)
Q Consensus 258 ~~---------l~~~-~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 325 (965)
.. +... ..+.+++.++.+.+... ..+++-++|+|++...+....+.|+..+..-.....+|++| ....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 10 0000 00111222222222221 13556689999998776677888888887665566666555 4444
Q ss_pred HHhh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChH-hHHHHHHhh
Q 002115 326 VARC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPL-AAKTIASLL 391 (965)
Q Consensus 326 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPl-ai~~~~~~l 391 (965)
+... ......+++.+++.++..+.+...+-..+...+ .+....|++.++|.+- |+..+-.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4332 233678999999999998888776643322111 2345678899999774 555554443
No 114
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00022 Score=82.89 Aligned_cols=201 Identities=16% Similarity=0.171 Sum_probs=112.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEE-cCCCCCHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVC-VSEPFDEFRIARAI 256 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i 256 (965)
.+++|.+..+..+.+++... .-...+.++|+.|+||||+|+.+.+.-.-...++...|-. +...+..-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 46899999999988888532 2345688999999999999988876521111111001110 00111111112222
Q ss_pred HHHhcCC-----CCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEee-cchHH
Q 002115 257 IESLTGS-----ASNFGEFQSLMQHIQEC----VEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITT-RKEIV 326 (965)
Q Consensus 257 ~~~l~~~-----~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v 326 (965)
...-... ......++++...+... ..+.+-++|+|++...+....+.+...+..-...+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1110000 00111233333322222 23556688999997765566777888877655556655544 44444
Q ss_pred Hhh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChH-hHHHH
Q 002115 327 ARC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPL-AAKTI 387 (965)
Q Consensus 327 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPl-ai~~~ 387 (965)
... ......+++.+++.++....+...+-..+... -.+.+..|++.++|..- |+..+
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I----~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI----DADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHHHHHHHH
Confidence 322 34467899999999998888877653322111 12346789999999554 44433
No 115
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=3.1e-06 Score=84.50 Aligned_cols=207 Identities=19% Similarity=0.138 Sum_probs=113.9
Q ss_pred hcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccC---ccccchhhhccCCCcEEeccCccccc--ccC
Q 002115 588 DKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQRE---IEKLPETLCELYNLEHLDISYCRNLR--ELP 662 (965)
Q Consensus 588 ~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~---i~~lp~~i~~L~~L~~LdL~~~~~l~--~lP 662 (965)
...+.++.|||..|.++ .. .++-.-..+|++|++|+|+.|.+ |+.+| -.+.+|++|-|.|+. +. ..-
T Consensus 68 ~~~~~v~elDL~~N~iS--dW--seI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~-L~w~~~~ 139 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLIS--DW--SEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTG-LSWTQST 139 (418)
T ss_pred HHhhhhhhhhcccchhc--cH--HHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCC-CChhhhh
Confidence 45677788888866654 11 23334455778888888887762 23333 245677777777765 32 233
Q ss_pred ccccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHh
Q 002115 663 QGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRA 742 (965)
Q Consensus 663 ~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~ 742 (965)
..+..+++++.|+++.|+ ++.+.+..+.... ....+..+..+..+...+.. ...
T Consensus 140 s~l~~lP~vtelHmS~N~--------------~rq~n~Dd~c~e~-~s~~v~tlh~~~c~~~~w~~-----------~~~ 193 (418)
T KOG2982|consen 140 SSLDDLPKVTELHMSDNS--------------LRQLNLDDNCIED-WSTEVLTLHQLPCLEQLWLN-----------KNK 193 (418)
T ss_pred hhhhcchhhhhhhhccch--------------hhhhccccccccc-cchhhhhhhcCCcHHHHHHH-----------HHh
Confidence 345566777777776651 1112221111111 00011111111111111110 001
Q ss_pred hccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCC-hhhHhhccCCcEEE
Q 002115 743 ELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVP-KIWITSLTNLRVLS 821 (965)
Q Consensus 743 ~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p-~~~~~~l~~L~~L~ 821 (965)
.-.-++++..+.+..|.++... .-.+..++|.+..|+|..+.+.. .. -..+..++.|..|.
T Consensus 194 l~r~Fpnv~sv~v~e~PlK~~s----------------~ek~se~~p~~~~LnL~~~~ids--wasvD~Ln~f~~l~dlR 255 (418)
T KOG2982|consen 194 LSRIFPNVNSVFVCEGPLKTES----------------SEKGSEPFPSLSCLNLGANNIDS--WASVDALNGFPQLVDLR 255 (418)
T ss_pred HHhhcccchheeeecCcccchh----------------hcccCCCCCcchhhhhccccccc--HHHHHHHcCCchhheee
Confidence 1233578888888887554321 22455677888888888776543 11 01244799999999
Q ss_pred EecCCCCCCCCC-------CCCCCCcceeeec
Q 002115 822 LFECRNCEHLPP-------LGKLPSIEVLEIY 846 (965)
Q Consensus 822 L~~~~~~~~lp~-------l~~L~~L~~L~L~ 846 (965)
++++.+++.+.. ++.|++++.|+=+
T Consensus 256 v~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 256 VSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 999988876543 6778888888643
No 116
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.00 E-value=0.00023 Score=72.35 Aligned_cols=181 Identities=13% Similarity=0.145 Sum_probs=98.8
Q ss_pred ccccc-hHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccc-c-ceEEEEcCCCCCHHHHHHH
Q 002115 179 EIFGR-EEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNF-E-KRIWVCVSEPFDEFRIARA 255 (965)
Q Consensus 179 ~~vGr-~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~ 255 (965)
.++|. .+..-.....+.... +.....+.|+|..|+|||.|.+++++. ..+.. . .++|+ +..++...
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~------~~~~f~~~ 78 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYL------SAEEFIRE 78 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEE------EHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceee------cHHHHHHH
Confidence 34564 333444444454432 223445889999999999999999987 33322 2 34465 34456666
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchh-hchHhH-HhhhcC-CCCCcEEEEeecchH-------
Q 002115 256 IIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVY-YKWEPF-YKCLKN-GLHESKILITTRKEI------- 325 (965)
Q Consensus 256 i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-~~~~~l-~~~l~~-~~~gs~ilvTtR~~~------- 325 (965)
+...+.. ....+ +...++ .-=+|++||++.-.. ..|... ...+.. ...|.+||+|++...
T Consensus 79 ~~~~~~~-----~~~~~----~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~ 148 (219)
T PF00308_consen 79 FADALRD-----GEIEE----FKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLL 148 (219)
T ss_dssp HHHHHHT-----TSHHH----HHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-
T ss_pred HHHHHHc-----ccchh----hhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccC
Confidence 6665543 12222 333333 334789999976322 234442 222222 134668999996432
Q ss_pred --HHhhcCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhH
Q 002115 326 --VARCMRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAA 384 (965)
Q Consensus 326 --v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai 384 (965)
....+...-.+++.+.++++...++.+++....-. --++++.-|++.+.+..-.+
T Consensus 149 ~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 149 PDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE----LPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHH
T ss_pred hhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHH
Confidence 22334456689999999999999999887533221 12345666666666544433
No 117
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00011 Score=86.37 Aligned_cols=195 Identities=16% Similarity=0.148 Sum_probs=113.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.+++|.+..++.+..++... .-...+.++|..|+||||+|+.+.+.-.-...+ .-...++.-...+.|.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~------~~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKAVNCTTND------PKGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCC------CCCCCCccCHHHHHHh
Confidence 47899999999998888543 134567899999999999999998652100000 0001112222333333
Q ss_pred HHhcCC-----CCCCCCHHHHH---HHHHHH-hCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecc-hHHH
Q 002115 258 ESLTGS-----ASNFGEFQSLM---QHIQEC-VEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRK-EIVA 327 (965)
Q Consensus 258 ~~l~~~-----~~~~~~~~~l~---~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 327 (965)
...... .......+.+. ..+... ..+++-++|+|++........+.+...+......+.+|+++.. ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 221110 00111222222 222211 1255678999999765555677777777665556676666643 3332
Q ss_pred hh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHH
Q 002115 328 RC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 328 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 387 (965)
.. ......+.+..++.++....+...+...+.... .+.+..|++.++|.+..+...
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~----~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE----PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 22 223567889999999998888877643222111 245778999999988655443
No 118
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00035 Score=79.50 Aligned_cols=184 Identities=14% Similarity=0.131 Sum_probs=109.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccc---c----------------ccccce
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGV---K----------------RNFEKR 238 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~----------------~~F~~~ 238 (965)
.+++|.+..++.+.+++.... -...+.++|..|+||||+|+.+.....- . +.|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 468999999999999985431 3446778999999999999988764110 0 001112
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEE
Q 002115 239 IWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQE-CVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKI 317 (965)
Q Consensus 239 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 317 (965)
+++..+..... .++..+...+.. -..+++-++|+|++........+.+...+........+
T Consensus 91 ~eidaas~~gv------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNRGI------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCCCH------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 22222111111 111222222221 12356779999999765555667777777665555565
Q ss_pred EEee-cchHHHhh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHH
Q 002115 318 LITT-RKEIVARC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIA 388 (965)
Q Consensus 318 lvTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 388 (965)
|++| +...+... ......+.+.+++.++....+...+-..+-..+ .+.+..|++.++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 5554 43333322 233568899999999998888876643222111 2346678889999776554443
No 119
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=3.3e-07 Score=91.30 Aligned_cols=164 Identities=22% Similarity=0.299 Sum_probs=115.4
Q ss_pred hhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEE
Q 002115 742 AELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLS 821 (965)
Q Consensus 742 ~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~ 821 (965)
..++.+++|+.|+|.++.+ ++.+...+....+|+.|+|+++.+....-....+.+|+.|..|+
T Consensus 204 ~iLs~C~kLk~lSlEg~~L-----------------dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRL-----------------DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred HHHHHHHhhhhcccccccc-----------------CcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 4566778899999988854 23455667778899999999998765221213456899999999
Q ss_pred EecCCCCCCCCC--CC-CCCCcceeeecCCCCceEeCc-cccCCCCCCCCccccCCcccccccccccccccccCcccccc
Q 002115 822 LFECRNCEHLPP--LG-KLPSIEVLEIYGVQSVKRVGN-EFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAIN 897 (965)
Q Consensus 822 L~~~~~~~~lp~--l~-~L~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~ 897 (965)
|++|......-. +. -=++|..|+|++|... ++. .+.. -...+|+|..|+|++|..|+.-.+
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn--l~~sh~~t--------L~~rcp~l~~LDLSD~v~l~~~~~----- 331 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN--LQKSHLST--------LVRRCPNLVHLDLSDSVMLKNDCF----- 331 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhh--hhhhHHHH--------HHHhCCceeeeccccccccCchHH-----
Confidence 999976553321 11 2368999999987521 111 1110 113689999999999887765332
Q ss_pred cccccCcccceEeeccCccCcCCCc---CCCCCCCCCeEeEcCCc
Q 002115 898 GEIMIMPRLSSLSIRRCPKLKALPD---RLLQKTTLQALTIGECP 939 (965)
Q Consensus 898 ~~~~~~~~L~~L~L~~c~~l~~lp~---~l~~l~~L~~L~l~~c~ 939 (965)
.++..|+.|++|.++.|..+ +|. .+...|+|.+|++.||-
T Consensus 332 ~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 332 QEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 34568999999999999854 454 45678999999999974
No 120
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.96 E-value=2.8e-05 Score=83.62 Aligned_cols=91 Identities=14% Similarity=0.070 Sum_probs=63.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCC--CCHHHHHHHHHHHhcCCCCCCCCHH------HHHH
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEP--FDEFRIARAIIESLTGSASNFGEFQ------SLMQ 275 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~l~~ 275 (965)
.-..++|+|.+|.|||||++.+++.... .+|+..+||.+.+. .++.++++.+...+-....+..... ...+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3458999999999999999999997433 37999999999866 7899999998654433322221111 1122
Q ss_pred HHHHH-hCCceEEEEEeCCCc
Q 002115 276 HIQEC-VEGKKFLLVLDDLWN 295 (965)
Q Consensus 276 ~l~~~-l~~kr~LlVlDdv~~ 295 (965)
..... -.+++.+|++|++..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 22222 358999999999954
No 121
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.96 E-value=5.8e-05 Score=75.64 Aligned_cols=177 Identities=20% Similarity=0.227 Sum_probs=101.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.+|+|.++-++++.=++..... .++.+-.|.++|++|.||||||.-+.+. +...+. ++-+....-..-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----ecccccccChhhHHHHH
Confidence 4799999888887766654332 4556778999999999999999999987 333321 11111111111122222
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcC--------CCCCcE-----------EE
Q 002115 258 ESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKN--------GLHESK-----------IL 318 (965)
Q Consensus 258 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~--------~~~gs~-----------il 318 (965)
..+ .+.=++.+|.+..-....-+.+..++-+ .++++| |=
T Consensus 99 t~L----------------------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 99 TNL----------------------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred hcC----------------------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 222 1223455566654322221222222211 123333 33
Q ss_pred EeecchHHHhhcCC--cceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHH
Q 002115 319 ITTRKEIVARCMRS--TNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 319 vTtR~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 387 (965)
-|||.-.+...+.. .-+.+++..+.+|-.+...+.+..-... --++-+.+|++...|-|--+.-+
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~----i~~~~a~eIA~rSRGTPRIAnRL 223 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIE----IDEEAALEIARRSRGTPRIANRL 223 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCC----CChHHHHHHHHhccCCcHHHHHH
Confidence 48887655443322 3467899999999999988876322211 12345889999999999655443
No 122
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.95 E-value=2e-06 Score=84.77 Aligned_cols=265 Identities=20% Similarity=0.194 Sum_probs=144.6
Q ss_pred hhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCcc---Cccccc-------hhhhccCCCcEEeccCcc
Q 002115 587 FDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQR---EIEKLP-------ETLCELYNLEHLDISYCR 656 (965)
Q Consensus 587 ~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~---~i~~lp-------~~i~~L~~L~~LdL~~~~ 656 (965)
+..+..+..++||+|.+. ......+.+.|.+-.+|+..+++.-. ...++| +.+-++++||+.+|+.|-
T Consensus 26 l~~~d~~~evdLSGNtig--tEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 26 LEMMDELVEVDLSGNTIG--TEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHhhcceeEEeccCCccc--HHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 444677788888866654 33344566677777788888877532 012333 346688999999999998
Q ss_pred cccccCcc----ccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCcc-ccccCCcCCcceeeccC
Q 002115 657 NLRELPQG----IGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLG-SLKKLNLLRYCRIHGLG 731 (965)
Q Consensus 657 ~l~~lP~~----i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~~l~~~~~~ 731 (965)
+-...|+. |.+-+.|.||.+++| .++ |.+ +..++ .|..|...
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~Nn-GlG--p~a---------------------G~rigkal~~la~n--------- 150 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNN-GLG--PIA---------------------GGRIGKALFHLAYN--------- 150 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecC-CCC--ccc---------------------hhHHHHHHHHHHHH---------
Confidence 66666654 456688999999888 222 211 00010 11111100
Q ss_pred CCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCCh---
Q 002115 732 DVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPK--- 808 (965)
Q Consensus 732 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~--- 808 (965)
....+.+.|+......|.+.... ....-..+..+.+|+.+.+..|.+......-
T Consensus 151 ----------KKaa~kp~Le~vicgrNRlengs-------------~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~ 207 (388)
T COG5238 151 ----------KKAADKPKLEVVICGRNRLENGS-------------KELSAALLESHENLKEVKIQQNGIRPEGVTMLAF 207 (388)
T ss_pred ----------hhhccCCCceEEEeccchhccCc-------------HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHH
Confidence 12234567777777766553321 1222234455677888888877654311110
Q ss_pred hhHhhccCCcEEEEecCCCCCCCC----C-CCCCCCcceeeecCCCCceEeCcc-ccCCCCCCCCccccCCccccccccc
Q 002115 809 IWITSLTNLRVLSLFECRNCEHLP----P-LGKLPSIEVLEIYGVQSVKRVGNE-FLGVESDTDGSSVIAFPKLKQLRFD 882 (965)
Q Consensus 809 ~~~~~l~~L~~L~L~~~~~~~~lp----~-l~~L~~L~~L~L~~~~~l~~~~~~-~~~~~~~~~~~~~~~f~~L~~L~l~ 882 (965)
.-+..+++|+.|+|.+|.++..-. . +...+.|+.|.+.+|- +..-|.. +... ..-..+|+|..|.+.
T Consensus 208 ~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v~~~------f~e~~~p~l~~L~~~ 280 (388)
T COG5238 208 LGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKSVLRR------FNEKFVPNLMPLPGD 280 (388)
T ss_pred HHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh-hccccHHHHHHH------hhhhcCCCccccccc
Confidence 011257888888888886654211 1 4556678888887764 1111111 1100 001247888888765
Q ss_pred ccccccccCccccccc-ccccCcccceEeeccCcc
Q 002115 883 EMDVLEEWDFGTAING-EIMIMPRLSSLSIRRCPK 916 (965)
Q Consensus 883 ~~~~L~~~~~~~~~~~-~~~~~~~L~~L~L~~c~~ 916 (965)
++..=........+|. +-..+|-|..|.+.+|..
T Consensus 281 Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 281 YNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred hhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 5421111000000110 112788999999998874
No 123
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.95 E-value=0.00022 Score=80.58 Aligned_cols=167 Identities=18% Similarity=0.161 Sum_probs=100.6
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccc--cceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNF--EKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVE 282 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 282 (965)
..-+.|+|..|+|||+|++.+.+. +.... ..+++++ ..++...+...+.... + ....+.+.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~-~~~~~~~~~~ 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMS------GDEFARKAVDILQKTH------K-EIEQFKNEIC 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------h-HHHHHHHHhc
Confidence 345899999999999999999985 22211 2234543 3456677766654311 1 1223333333
Q ss_pred CceEEEEEeCCCcchh-hch-HhHHhhhcCC-CCCcEEEEeecch---------HHHhhcCCcceEeCCCCChHHHHHHH
Q 002115 283 GKKFLLVLDDLWNEVY-YKW-EPFYKCLKNG-LHESKILITTRKE---------IVARCMRSTNVIYVNVLSEIECWSVF 350 (965)
Q Consensus 283 ~kr~LlVlDdv~~~~~-~~~-~~l~~~l~~~-~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 350 (965)
..-+||+||+..... ..| +.+...+... ..|..||+||... .+...+...-.+.+++++.++..+++
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 344889999965321 122 2343333321 3445788887643 22223444568889999999999999
Q ss_pred HHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHH
Q 002115 351 EQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIAS 389 (965)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~ 389 (965)
++++-..+-. ..--+++..-|++.+.|.|-.+.-+..
T Consensus 285 ~~~~~~~gl~--~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 285 KKEIKNQNIK--QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHhcCCC--CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 9887432210 012245678899999999877765543
No 124
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00036 Score=81.53 Aligned_cols=190 Identities=17% Similarity=0.170 Sum_probs=109.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccccccc---c-c---ceEEEEcCCCCCHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRN---F-E---KRIWVCVSEPFDEF 250 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~---~~~wv~vs~~~~~~ 250 (965)
.+++|.+..++.+..++... .-...+.++|+.|+||||+|+.+.+.---... + . |... ....++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~--~~~~~Dvi 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN--VNNSLDII 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh--hcCCCcEE
Confidence 46899999999999988643 23456789999999999999988764110000 0 0 0000 00000000
Q ss_pred HHHHHHHHHhcCC-CCCCCCHHHHHHHHHHH-hCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEE-EeecchHHH
Q 002115 251 RIARAIIESLTGS-ASNFGEFQSLMQHIQEC-VEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKIL-ITTRKEIVA 327 (965)
Q Consensus 251 ~~~~~i~~~l~~~-~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTtR~~~v~ 327 (965)
.+.+. .....++.++.+.+... ..+++-++|+|++.......+..+...+-.......+| +|++...+.
T Consensus 91 --------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 91 --------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred --------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 00000 00011122333322221 23566799999997766667888877776654455544 455544443
Q ss_pred hh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHH
Q 002115 328 RC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKT 386 (965)
Q Consensus 328 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~ 386 (965)
.. ......+++.+++.++....+...+-..+.... .+.+..|++.++|.+--+..
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 32 334578999999999999888876533221111 23467799999997654433
No 125
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00037 Score=81.64 Aligned_cols=181 Identities=18% Similarity=0.157 Sum_probs=111.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccc---------------------cccccc
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDG---------------------VKRNFE 236 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---------------------~~~~F~ 236 (965)
.+++|.+..++.+..++... .-...+.++|..|+||||+|+.+..... ...+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 46899999999999998543 2345688999999999999988776411 011232
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcE
Q 002115 237 KRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESK 316 (965)
Q Consensus 237 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 316 (965)
. ..+..+.......+ +.+++++... -..+++=++|+|++...+...++.+...+..-..++.
T Consensus 92 ~-~~ld~~~~~~vd~I-r~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 92 I-HELDAASNNSVDDI-RNLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred e-EEecccccCCHHHH-HHHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 1 12222221112111 1111211100 0124556889999987666678888888877656677
Q ss_pred EEEee-cchHHHhh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHH
Q 002115 317 ILITT-RKEIVARC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAK 385 (965)
Q Consensus 317 ilvTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 385 (965)
+|++| ....+... ......+++.++++++....+...+-..+-..+ .+.+..|++.++|..--+.
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMRDAL 220 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 66555 44444332 334678999999999999888876643322111 2346779999999665443
No 126
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.93 E-value=0.00069 Score=70.97 Aligned_cols=167 Identities=17% Similarity=0.209 Sum_probs=105.7
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHH
Q 002115 177 ESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAI 256 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 256 (965)
++.+.+|+.++..+...+...+ ..-+..|.|+|-.|.|||.+.+.+.+... . ..+|+++-+.++.+.++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n--~---~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLN--L---ENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcC--C---cceeeehHHhccHHHHHHHH
Confidence 4678899999999988775432 12456779999999999999999998742 2 36899999999999999999
Q ss_pred HHHhcCCCCCC--C-----CHHHHHHHHHH--Hh--CCceEEEEEeCCCcchhhchHh-HHhh---hcC-CCCCcEEEEe
Q 002115 257 IESLTGSASNF--G-----EFQSLMQHIQE--CV--EGKKFLLVLDDLWNEVYYKWEP-FYKC---LKN-GLHESKILIT 320 (965)
Q Consensus 257 ~~~l~~~~~~~--~-----~~~~l~~~l~~--~l--~~kr~LlVlDdv~~~~~~~~~~-l~~~---l~~-~~~gs~ilvT 320 (965)
+.++.....+. . .+......+.+ .. +++.++||||++..- .+.+. +... +.. .....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCceEEEE
Confidence 99985222111 1 11222222333 11 156899999999652 12222 1111 111 1122345555
Q ss_pred ecchHHHhh---cCCcc--eEeCCCCChHHHHHHHHHH
Q 002115 321 TRKEIVARC---MRSTN--VIYVNVLSEIECWSVFEQL 353 (965)
Q Consensus 321 tR~~~v~~~---~~~~~--~~~l~~L~~~~~~~lf~~~ 353 (965)
+-...-... +++.. ++....-+.+|...++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 543222221 34433 5567888999999888763
No 127
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.93 E-value=1.7e-06 Score=97.82 Aligned_cols=82 Identities=29% Similarity=0.451 Sum_probs=39.2
Q ss_pred hhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCcccc
Q 002115 587 FDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIG 666 (965)
Q Consensus 587 ~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~ 666 (965)
+..++.|..|++. ++.|..+...+..+++|++|+|++|. |+.+.. +..+..|+.|++++|. +..++ ++.
T Consensus 91 l~~~~~l~~l~l~-------~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~-i~~~~-~~~ 159 (414)
T KOG0531|consen 91 LSKLKSLEALDLY-------DNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNL-ISDIS-GLE 159 (414)
T ss_pred cccccceeeeecc-------ccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccCc-chhcc-CCc
Confidence 3445555555555 22233333224445555555555555 444443 4445555555555554 44332 334
Q ss_pred CCCCccEeecCCC
Q 002115 667 KLRKLMYLENDGT 679 (965)
Q Consensus 667 ~L~~L~~L~l~~~ 679 (965)
.+++|+.+++++|
T Consensus 160 ~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 160 SLKSLKLLDLSYN 172 (414)
T ss_pred cchhhhcccCCcc
Confidence 4555555555554
No 128
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.92 E-value=5.7e-06 Score=64.97 Aligned_cols=59 Identities=24% Similarity=0.376 Sum_probs=46.9
Q ss_pred CCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCCC
Q 002115 789 PNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGVQ 849 (965)
Q Consensus 789 ~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~~ 849 (965)
|+|++|.+++|.+.. +|+.+|..+++|+.|+|++|.+....|. |.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~--i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE--IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESE--ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCc--cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 578889999888877 6767888889999999998877654443 8888888888888764
No 129
>CHL00181 cbbX CbbX; Provisional
Probab=97.91 E-value=0.00093 Score=70.83 Aligned_cols=134 Identities=14% Similarity=0.101 Sum_probs=74.3
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCce
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKK 285 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 285 (965)
..+.++|.+|+||||+|+.+++.....+.-...-|+.++. .+ +...+.+.. .......+.+ .. .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~-----~~~~~~~l~~-a~--g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT-----APKTKEVLKK-AM--G 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc-----hHHHHHHHHH-cc--C
Confidence 3588999999999999999976421111111122554441 12 222222211 1112222322 22 2
Q ss_pred EEEEEeCCCcc---------hhhchHhHHhhhcCCCCCcEEEEeecchHHHhhc--------CCcceEeCCCCChHHHHH
Q 002115 286 FLLVLDDLWNE---------VYYKWEPFYKCLKNGLHESKILITTRKEIVARCM--------RSTNVIYVNVLSEIECWS 348 (965)
Q Consensus 286 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~ 348 (965)
-+|++|++..- ..+..+.+...+.....+.+||+++....+.... .-...+.+.+++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 49999999541 1222334445555554556777777654432211 114578899999999999
Q ss_pred HHHHHhc
Q 002115 349 VFEQLAF 355 (965)
Q Consensus 349 lf~~~~~ 355 (965)
++...+-
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 9888764
No 130
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.91 E-value=5.2e-05 Score=83.06 Aligned_cols=120 Identities=16% Similarity=0.177 Sum_probs=78.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.++++.++..+.+...|... +.+.++|++|+|||++|+.+++.......|+.+.||.+++.++..++...+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 45788899999999998632 3678899999999999999998744445678888999999888776654331
Q ss_pred HHhcCCCCCCCCH-HHHHHHHHHHh--CCceEEEEEeCCCcchhhc-hHhHHhhhc
Q 002115 258 ESLTGSASNFGEF-QSLMQHIQECV--EGKKFLLVLDDLWNEVYYK-WEPFYKCLK 309 (965)
Q Consensus 258 ~~l~~~~~~~~~~-~~l~~~l~~~l--~~kr~LlVlDdv~~~~~~~-~~~l~~~l~ 309 (965)
....+..-. ....+.+.+.. .+++++||+|++...+... +..+...+.
T Consensus 247 ----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 247 ----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred ----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 111110000 11222222222 2578999999997755333 444444443
No 131
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.89 E-value=0.0002 Score=78.21 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=86.9
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHH
Q 002115 177 ESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAI 256 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 256 (965)
-.+++|.++..+.+..++... ....++.++|.+|+||||+|+.+++. .... ...++.+. ... +..+..
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~-~~i~~~ 87 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRI-DFVRNR 87 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccH-HHHHHH
Confidence 357899999999999998532 23568888999999999999999876 2222 23444443 221 111121
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcc-hhhchHhHHhhhcCCCCCcEEEEeecchH-HHhh-cCCc
Q 002115 257 IESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNE-VYYKWEPFYKCLKNGLHESKILITTRKEI-VARC-MRST 333 (965)
Q Consensus 257 ~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~-~~~~ 333 (965)
+..+.... .+.+.+-+||+||+... .....+.+...+.....++++|+||.... +... ....
T Consensus 88 l~~~~~~~---------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 88 LTRFASTV---------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHHhh---------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 11110000 01234568899999754 22233345444555556778888886432 1111 1223
Q ss_pred ceEeCCCCChHHHHHHHHH
Q 002115 334 NVIYVNVLSEIECWSVFEQ 352 (965)
Q Consensus 334 ~~~~l~~L~~~~~~~lf~~ 352 (965)
..+.+...+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 4677777777777666544
No 132
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00067 Score=77.16 Aligned_cols=180 Identities=13% Similarity=0.083 Sum_probs=112.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccc--ccc----------------cc-ce
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGV--KRN----------------FE-KR 238 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~----------------F~-~~ 238 (965)
.+++|-+...+.+...+... .-..+..++|..|+||||+|+.+.+.--- ... +. .+
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 46899999999999888532 23456789999999999999977654100 000 10 11
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCcchhhchHhHHhhhcCCCCC
Q 002115 239 IWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQEC----VEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHE 314 (965)
Q Consensus 239 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 314 (965)
+.+..+... ..+.+...+... ..+++-++|+|++...+.+..+.++..+-.....
T Consensus 89 ~eldaas~~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 89 IEMDAASNR---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred EEecccccc---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 122211111 122222222210 1245668999999887667778888877766566
Q ss_pred cEEEEeecch-HHHh-hcCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHH
Q 002115 315 SKILITTRKE-IVAR-CMRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 315 s~ilvTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 387 (965)
+++|++|... .+.. .......+++.+++.++....+.+.+-..+... -++.+..|++.++|.+--+..+
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i----~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY----EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHHH
Confidence 7777766543 2221 122357899999999999998887664332211 1345678999999988555444
No 133
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.87 E-value=2.5e-06 Score=96.60 Aligned_cols=60 Identities=33% Similarity=0.532 Sum_probs=26.4
Q ss_pred hhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCC
Q 002115 617 IENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGT 679 (965)
Q Consensus 617 i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~ 679 (965)
++.+.+|.+|++..|. +..+...+..+++|++|++++|. ++.+. ++..++.|+.|++.+|
T Consensus 91 l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNLSGN 150 (414)
T ss_pred cccccceeeeeccccc-hhhcccchhhhhcchheeccccc-ccccc-chhhccchhhheeccC
Confidence 3444444444444444 44443334444444444444444 33331 3344444444444444
No 134
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.86 E-value=0.00053 Score=68.60 Aligned_cols=124 Identities=22% Similarity=0.301 Sum_probs=73.2
Q ss_pred CCCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHH
Q 002115 175 IDESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIAR 254 (965)
Q Consensus 175 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 254 (965)
+.-..++|.+.+++.+++-...-- .+....-+.++|..|.|||++++++.+...-++ .--|.|.+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k--------- 88 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSK--------- 88 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECH---------
Confidence 345579999999998887542211 122445778899999999999999987522221 11222222
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCC-cchhhchHhHHhhhcCC---CCC-cEEEEeecchH
Q 002115 255 AIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLW-NEVYYKWEPFYKCLKNG---LHE-SKILITTRKEI 325 (965)
Q Consensus 255 ~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~-~~~~~~~~~l~~~l~~~---~~g-s~ilvTtR~~~ 325 (965)
.+..++..+.+.++. ...||+|.+||+. ++....+..+++.|..+ .+. ..|..||..+.
T Consensus 89 ----------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 89 ----------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred ----------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 112233444444442 4679999999984 23334566777766543 233 34455554443
No 135
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=1.8e-05 Score=56.77 Aligned_cols=38 Identities=34% Similarity=0.579 Sum_probs=24.0
Q ss_pred CCcEEEeCCccCccccchhhhccCCCcEEeccCccccccc
Q 002115 622 HLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLREL 661 (965)
Q Consensus 622 ~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~l 661 (965)
+|++|++++|. ++.+|..+++|++|++|++++|. ++.+
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 56677777776 66666666777777777777766 5444
No 136
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.00054 Score=77.48 Aligned_cols=182 Identities=14% Similarity=0.145 Sum_probs=107.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccccc---------------------cccc
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVK---------------------RNFE 236 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~ 236 (965)
.+++|.+..++.+.+++... .-...+.++|..|+||||+|+.+.+...-. .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 46899999999999988542 134578899999999999998887641100 0111
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCc
Q 002115 237 KRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQE-CVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHES 315 (965)
Q Consensus 237 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 315 (965)
.+++........ .++.++.+.+.. -..+++-++|+|++........+.+...+.......
T Consensus 92 -~~~i~g~~~~gi------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRGI------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCCH------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 111111111111 111111111111 113566789999987654455666777776655566
Q ss_pred EEEEeecc-hHHHhh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChH-hHHHH
Q 002115 316 KILITTRK-EIVARC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPL-AAKTI 387 (965)
Q Consensus 316 ~ilvTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPl-ai~~~ 387 (965)
.+|++|.. ..+... ......+++.++++++....+...+-..+... -.+.+..|++.++|.+- |+..+
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i----~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET----SREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 67666633 322221 23356899999999999888887653322111 12356789999999664 44443
No 137
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00076 Score=79.06 Aligned_cols=196 Identities=16% Similarity=0.152 Sum_probs=112.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
..++|.+..++.+..++.... -...+.++|..|+||||+|+.+++.-.-. ..+.. ....+..-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~----~~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKP----TPEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCC----CCCCCcccHHHHHHh
Confidence 468999999999998886431 23467899999999999999998762110 00000 001122222233332
Q ss_pred HHhcCC-----CCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeec-chHHH
Q 002115 258 ESLTGS-----ASNFGEFQSLMQHIQEC----VEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTR-KEIVA 327 (965)
Q Consensus 258 ~~l~~~-----~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR-~~~v~ 327 (965)
...... ......++.+.+.+... ..+++-++|+|++.......++.+...+..-.....+|++|. ...+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 221110 00112233333332221 124556899999987666677888887776545555555443 33333
Q ss_pred hh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHH
Q 002115 328 RC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 328 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 387 (965)
.. ......+++..++.++....+...+-..+.... .+.+..|++.++|.+..+...
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 22 233568889999999988887776533221111 234678999999987655443
No 138
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.83 E-value=0.00077 Score=71.52 Aligned_cols=133 Identities=15% Similarity=0.105 Sum_probs=73.8
Q ss_pred EEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceE
Q 002115 207 IISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKF 286 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~ 286 (965)
-+.++|.+|.||||+|+.+.....-.+.....-|+.++. .+ ++..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHc---cCc
Confidence 588999999999999977765411111111123444442 12 222222211 11222223322 235
Q ss_pred EEEEeCCCcc---------hhhchHhHHhhhcCCCCCcEEEEeecchHHHhhc--C------CcceEeCCCCChHHHHHH
Q 002115 287 LLVLDDLWNE---------VYYKWEPFYKCLKNGLHESKILITTRKEIVARCM--R------STNVIYVNVLSEIECWSV 349 (965)
Q Consensus 287 LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~--~------~~~~~~l~~L~~~~~~~l 349 (965)
+|++|++..- ..+.++.+...+.....+.+||+++......... . -...+++.+++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899998521 1223445566665555566777776543322211 1 135788999999999999
Q ss_pred HHHHhc
Q 002115 350 FEQLAF 355 (965)
Q Consensus 350 f~~~~~ 355 (965)
+.+.+-
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 888753
No 139
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.80 E-value=0.00043 Score=72.89 Aligned_cols=161 Identities=15% Similarity=0.110 Sum_probs=82.0
Q ss_pred ccccchHHHHHHHHH---HhcC-----C-CCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCH
Q 002115 179 EIFGREEEKNELVNR---LLCE-----S-SKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDE 249 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~---L~~~-----~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 249 (965)
.++|.+..+++|.+. .... . -...+....+.++|++|+||||+|+.+++...-.+.-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 478888776666543 2110 0 01123456788999999999999999986411001111122333322
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcch--------hhchHhHHhhhcCCCCCcEEEEee
Q 002115 250 FRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEV--------YYKWEPFYKCLKNGLHESKILITT 321 (965)
Q Consensus 250 ~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvTt 321 (965)
.++.. ...+ .........+.+. . .-+|++|++..-. .+..+.+...+........+|+++
T Consensus 83 ~~l~~----~~~g-----~~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADLVG----EYIG-----HTAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHhhh----hhcc-----chHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 11111 1100 0111222222222 2 2489999996421 122334444444443344556665
Q ss_pred cchHHHh------hc-CC-cceEeCCCCChHHHHHHHHHHhc
Q 002115 322 RKEIVAR------CM-RS-TNVIYVNVLSEIECWSVFEQLAF 355 (965)
Q Consensus 322 R~~~v~~------~~-~~-~~~~~l~~L~~~~~~~lf~~~~~ 355 (965)
....... .+ .. ...+++++++.++-.+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 5433211 11 11 34678999999999999987764
No 140
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.79 E-value=0.00091 Score=75.50 Aligned_cols=157 Identities=14% Similarity=0.117 Sum_probs=90.5
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccc--cceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNF--EKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVE 282 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 282 (965)
...+.|+|..|+|||+|++.+++. +.... ..++|++. .++...+...+... ..+.... .++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~~~~----~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEEFKE----KYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHHHHH----HHH
Confidence 346899999999999999999987 33332 23456543 34444555544321 2233322 232
Q ss_pred CceEEEEEeCCCcchhh-ch-HhHHhhhcCC-CCCcEEEEeecch--HH-------HhhcCCcceEeCCCCChHHHHHHH
Q 002115 283 GKKFLLVLDDLWNEVYY-KW-EPFYKCLKNG-LHESKILITTRKE--IV-------ARCMRSTNVIYVNVLSEIECWSVF 350 (965)
Q Consensus 283 ~kr~LlVlDdv~~~~~~-~~-~~l~~~l~~~-~~gs~ilvTtR~~--~v-------~~~~~~~~~~~l~~L~~~~~~~lf 350 (965)
+ .-+|||||+...... .+ +.+...+... ..|..+|+||... .+ ...+.....+.+.+.+.++-..++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 338899999653211 11 2233333221 2345688888642 11 112233457899999999999999
Q ss_pred HHHhccCCCccchhHHHHHHHHHHHHcCCChHh
Q 002115 351 EQLAFFGRSMEECEKLENMGRQIVRKCKGLPLA 383 (965)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPla 383 (965)
++++-.....- -+++...|++.+.|.+-.
T Consensus 278 ~~~~~~~~~~l----~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 278 QKKAEEEGLEL----PDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHHcCCCC----CHHHHHHHHHhcCCCHHH
Confidence 98874432211 134567778888876654
No 141
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.78 E-value=0.00027 Score=78.71 Aligned_cols=158 Identities=19% Similarity=0.179 Sum_probs=89.3
Q ss_pred CCccccchHHHHHHHHHHhcCCCC-------CCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCH
Q 002115 177 ESEIFGREEEKNELVNRLLCESSK-------EQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDE 249 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 249 (965)
..++.|+++.++++.+.+..+-.. +-..++-|.++|++|+|||++|+.+++. .... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----
Confidence 346899999999998876421110 1234567899999999999999999986 3322 233221
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-CCceEEEEEeCCCcc-----------hhhchHhHHhhhc---C--CC
Q 002115 250 FRIARAIIESLTGSASNFGEFQSLMQHIQECV-EGKKFLLVLDDLWNE-----------VYYKWEPFYKCLK---N--GL 312 (965)
Q Consensus 250 ~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~---~--~~ 312 (965)
.. +.....+ +.......+.+.. ...+.+|++||+..- +......+...+. . ..
T Consensus 199 ~~----l~~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 SE----LVQKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred HH----HhHhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 11 1111111 0111222222222 345789999999642 0111222333332 1 12
Q ss_pred CCcEEEEeecchH-HHhhc-C---CcceEeCCCCChHHHHHHHHHHhc
Q 002115 313 HESKILITTRKEI-VARCM-R---STNVIYVNVLSEIECWSVFEQLAF 355 (965)
Q Consensus 313 ~gs~ilvTtR~~~-v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~ 355 (965)
.+..||.||.... +...+ . -...+.+.+.+.++..++|+.+..
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~ 316 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR 316 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc
Confidence 3556777776532 22221 1 145788999999999999988764
No 142
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.0022 Score=68.79 Aligned_cols=196 Identities=14% Similarity=0.088 Sum_probs=113.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccc-------------cccccceEEEEcC
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGV-------------KRNFEKRIWVCVS 244 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~vs 244 (965)
.+++|.+..++.+...+.... -.....++|..|+||+++|..+.+.--- ...+....|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 368999999999999885432 3468999999999999999777654100 1122333444321
Q ss_pred CCCCHHHHHHHHHHHhc--CCCCCCCCHHHHHHHHHHHh-----CCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEE
Q 002115 245 EPFDEFRIARAIIESLT--GSASNFGEFQSLMQHIQECV-----EGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKI 317 (965)
Q Consensus 245 ~~~~~~~~~~~i~~~l~--~~~~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 317 (965)
...+-..+-..-++..+ ........+++.. .+.+.+ .+++-++|+|++...+......+...+-.-. .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000000011111111 1111122233332 233333 3567799999998776677788888776544 4455
Q ss_pred EEee-cchHHHh-hcCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHH
Q 002115 318 LITT-RKEIVAR-CMRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 318 lvTt-R~~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 387 (965)
|++| ....+-. .......+++.++++++..+.+.+....... . .....++..++|.|..+...
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~---~----~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL---N----INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc---h----hHHHHHHHHcCCCHHHHHHH
Confidence 5555 4433332 2334679999999999999999886421110 0 11357889999999766543
No 143
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00076 Score=78.85 Aligned_cols=196 Identities=14% Similarity=0.168 Sum_probs=110.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.+++|.+..++.+..++... .-...+.++|..|+||||+|+.+.+...-....+ ..+++.-...+.|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHh
Confidence 47899999999999988542 1345678999999999999988876511000000 00011111111111
Q ss_pred HHh-------cCC-CCCCCCHHHHHHHHHHH-hCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEee-cchHHH
Q 002115 258 ESL-------TGS-ASNFGEFQSLMQHIQEC-VEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITT-RKEIVA 327 (965)
Q Consensus 258 ~~l-------~~~-~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~ 327 (965)
..- .+. .....++.++...+... ..+++-++|+|++...+....+.+...+-.....+.+|++| ....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 100 000 00011222222222211 12455689999997766667777887776655566666544 444444
Q ss_pred hh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCCh-HhHHHHHH
Q 002115 328 RC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLP-LAAKTIAS 389 (965)
Q Consensus 328 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP-lai~~~~~ 389 (965)
.. ......+++.+++.++....+...+-..+...+ .+....|++.++|.. .|+..+-.
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 32 233668889999999988888776532221111 234677889999865 44444433
No 144
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.71 E-value=0.00081 Score=75.75 Aligned_cols=134 Identities=19% Similarity=0.148 Sum_probs=78.3
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGK 284 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 284 (965)
..-+.|+|..|+|||+|++.+++. +...-..+++++ ...+...+...+... .. ..++..++ .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 356889999999999999999987 322223345554 234445555554321 11 12333333 3
Q ss_pred eEEEEEeCCCcchhhch--HhHHhhhcC-CCCCcEEEEeecch---------HHHhhcCCcceEeCCCCChHHHHHHHHH
Q 002115 285 KFLLVLDDLWNEVYYKW--EPFYKCLKN-GLHESKILITTRKE---------IVARCMRSTNVIYVNVLSEIECWSVFEQ 352 (965)
Q Consensus 285 r~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 352 (965)
.-+|++||+.......| +.+...+.. ...|..||+||... .+...+.....+.+.+++.++...++++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 44888999865321111 223332221 12355788888542 1222233456888999999999999988
Q ss_pred Hhcc
Q 002115 353 LAFF 356 (965)
Q Consensus 353 ~~~~ 356 (965)
++-.
T Consensus 283 k~~~ 286 (445)
T PRK12422 283 KAEA 286 (445)
T ss_pred HHHH
Confidence 7743
No 145
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=1.8e-06 Score=86.29 Aligned_cols=117 Identities=16% Similarity=0.164 Sum_probs=67.4
Q ss_pred hhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCC--CCCChhhHhhccCCcE
Q 002115 742 AELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRR--NVVPKIWITSLTNLRV 819 (965)
Q Consensus 742 ~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~--~~~p~~~~~~l~~L~~ 819 (965)
..+.+++.|.+|+|+||.+.... .......+ -++|+.|+|+||.-.- ..+. .....+++|..
T Consensus 254 ll~~scs~L~~LNlsWc~l~~~~-------------Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~ 317 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCFLFTEK-------------VTVAVAHI--SETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVH 317 (419)
T ss_pred HHHHhhhhHhhcCchHhhccchh-------------hhHHHhhh--chhhhhhhhhhhHhhhhhhHHH-HHHHhCCceee
Confidence 34566777888888888543311 11111111 2567788888775321 0011 22236788888
Q ss_pred EEEecCCCCCC--CCCCCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccccccccccc
Q 002115 820 LSLFECRNCEH--LPPLGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMD 885 (965)
Q Consensus 820 L~L~~~~~~~~--lp~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 885 (965)
|+|++|..... +..+-+++.|++|.++.|..+ +++.+.. ....|+|.+|++.+|-
T Consensus 318 LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~---------l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 318 LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLE---------LNSKPSLVYLDVFGCV 374 (419)
T ss_pred eccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeee---------eccCcceEEEEecccc
Confidence 88888765443 122667888888888887644 2333332 2357888888887763
No 146
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.0019 Score=74.90 Aligned_cols=194 Identities=12% Similarity=0.063 Sum_probs=111.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.+++|-+..++.+..++... .-...+.++|..|+||||+|+.+.+...-..... ...+... ...+.|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~---~~pC~~C----~~C~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPT---PMPCGEC----SSCKSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCC---CCCCccc----hHHHHHH
Confidence 46899999999999998643 2345788999999999999999987521110000 0000000 0001111
Q ss_pred HHhcC-----CCCCCCCHHHHHH---HHHH-HhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeec-chHHH
Q 002115 258 ESLTG-----SASNFGEFQSLMQ---HIQE-CVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTR-KEIVA 327 (965)
Q Consensus 258 ~~l~~-----~~~~~~~~~~l~~---~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR-~~~v~ 327 (965)
..-.. ........+.+.. .+.. -..+++-++|+|++...+...++.+...+......+.+|++|. ...+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 10000 0000011222222 2121 1235666899999987666677788877776556666666553 33333
Q ss_pred hh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHH
Q 002115 328 RC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 328 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 387 (965)
.. ......+++.+++.++....+...+...+... -++.+..|++.++|.+-.+...
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i----d~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY----EDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 22 23356789999999999888887764332211 1334677889999987544433
No 147
>PRK06620 hypothetical protein; Validated
Probab=97.69 E-value=0.0015 Score=65.96 Aligned_cols=132 Identities=12% Similarity=0.061 Sum_probs=76.0
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCce
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKK 285 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 285 (965)
+.+.|+|++|+|||+|++.+++... . .++. ..+.. + +.. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHH-hcC
Confidence 5799999999999999999887632 1 1221 00000 0 001 123
Q ss_pred EEEEEeCCCcchhhchHhHHhhhcC-CCCCcEEEEeecchH-------HHhhcCCcceEeCCCCChHHHHHHHHHHhccC
Q 002115 286 FLLVLDDLWNEVYYKWEPFYKCLKN-GLHESKILITTRKEI-------VARCMRSTNVIYVNVLSEIECWSVFEQLAFFG 357 (965)
Q Consensus 286 ~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 357 (965)
-++++||+..-.. ..+...+.. ...|..||+|++... ....+...-+++++++++++-..++++.+...
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 4788999963211 122222211 134668999997432 22234445689999999999888887765321
Q ss_pred CCccchhHHHHHHHHHHHHcCCChH
Q 002115 358 RSMEECEKLENMGRQIVRKCKGLPL 382 (965)
Q Consensus 358 ~~~~~~~~l~~~~~~i~~~c~GlPl 382 (965)
. ..- -+++..-|++.+.|.--
T Consensus 164 ~-l~l---~~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 164 S-VTI---SRQIIDFLLVNLPREYS 184 (214)
T ss_pred C-CCC---CHHHHHHHHHHccCCHH
Confidence 1 111 13456667777766443
No 148
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.67 E-value=0.00049 Score=83.94 Aligned_cols=155 Identities=21% Similarity=0.249 Sum_probs=86.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccc---cccc-ccceEE-EEcCCCCCHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDG---VKRN-FEKRIW-VCVSEPFDEFRI 252 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~-F~~~~w-v~vs~~~~~~~~ 252 (965)
..++||+.++.++++.|... ...-+.++|.+|+||||+|+.+.+... +... .+..+| +.++. +
T Consensus 187 d~~iGr~~ei~~~i~~l~r~------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------l 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------L 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh------h
Confidence 46899999999999998654 223556999999999999999987621 1111 123333 22221 0
Q ss_pred HHHHHHHhcCCCCCCCCH-HHHHHHHHHHh-CCceEEEEEeCCCcch-------hhchH-hHHhhhcCCCCCcEEEEeec
Q 002115 253 ARAIIESLTGSASNFGEF-QSLMQHIQECV-EGKKFLLVLDDLWNEV-------YYKWE-PFYKCLKNGLHESKILITTR 322 (965)
Q Consensus 253 ~~~i~~~l~~~~~~~~~~-~~l~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~~~-~l~~~l~~~~~gs~ilvTtR 322 (965)
..+.. ...+. ..+...+.+.- .+++.+|++|++..-. ..+-. .+...+..+ .-++|-||.
T Consensus 255 -------~ag~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~IgaTT 324 (852)
T TIGR03345 255 -------QAGAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAATT 324 (852)
T ss_pred -------hcccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEecC
Confidence 00000 01111 12222222221 2578999999985421 11111 133333332 345666665
Q ss_pred chHHHhh-------cCCcceEeCCCCChHHHHHHHHHHh
Q 002115 323 KEIVARC-------MRSTNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 323 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
..+.... ......+.+++++.++..++++...
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 5332211 1224689999999999999975543
No 149
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.63 E-value=0.0035 Score=71.95 Aligned_cols=154 Identities=12% Similarity=0.089 Sum_probs=88.8
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccc--cceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCC
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNF--EKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEG 283 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 283 (965)
..+.|+|..|.|||.|++.+++. ....+ ..++|++. .++..++...+... ..+ .+++.+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~~----~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KGD----SFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cHH----HHHHHhhc
Confidence 35899999999999999999987 33222 23446543 34444554443221 112 22233332
Q ss_pred ceEEEEEeCCCcchh-hchHh-HHhhhcCC-CCCcEEEEeecch---------HHHhhcCCcceEeCCCCChHHHHHHHH
Q 002115 284 KKFLLVLDDLWNEVY-YKWEP-FYKCLKNG-LHESKILITTRKE---------IVARCMRSTNVIYVNVLSEIECWSVFE 351 (965)
Q Consensus 284 kr~LlVlDdv~~~~~-~~~~~-l~~~l~~~-~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 351 (965)
-=+|||||+..... ..|.. +...+... ..|..|||||+.. .+...+...-++.+...+.+.-.++++
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 24788999965321 22332 33333221 2356788888752 222334456789999999999999999
Q ss_pred HHhccCCCccchhHHHHHHHHHHHHcCCCh
Q 002115 352 QLAFFGRSMEECEKLENMGRQIVRKCKGLP 381 (965)
Q Consensus 352 ~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 381 (965)
+++....-.-. +++..-|++.+.+..
T Consensus 457 kka~~r~l~l~----~eVi~yLa~r~~rnv 482 (617)
T PRK14086 457 KKAVQEQLNAP----PEVLEFIASRISRNI 482 (617)
T ss_pred HHHHhcCCCCC----HHHHHHHHHhccCCH
Confidence 88744322111 344555666655543
No 150
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.62 E-value=0.0028 Score=71.75 Aligned_cols=157 Identities=14% Similarity=0.118 Sum_probs=91.2
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccc-c-ceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNF-E-KRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVE 282 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 282 (965)
..-+.|+|.+|+|||+|++.+++. +...+ . .++|++. .++...+...+... ..+. +.+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHH
Confidence 335999999999999999999987 33332 2 3456643 35566666555321 1222 222333
Q ss_pred CceEEEEEeCCCcch-hhch-HhHHhhhcC-CCCCcEEEEeec-chH----H----HhhcCCcceEeCCCCChHHHHHHH
Q 002115 283 GKKFLLVLDDLWNEV-YYKW-EPFYKCLKN-GLHESKILITTR-KEI----V----ARCMRSTNVIYVNVLSEIECWSVF 350 (965)
Q Consensus 283 ~kr~LlVlDdv~~~~-~~~~-~~l~~~l~~-~~~gs~ilvTtR-~~~----v----~~~~~~~~~~~l~~L~~~~~~~lf 350 (965)
.+.-+|++||+.... ...+ +.+...+.. ...|..||+||. ... + ...+...-.+.+++.+.+.-.+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 345589999996421 1112 123332221 123457888885 221 1 112334558889999999999999
Q ss_pred HHHhccCCCccchhHHHHHHHHHHHHcCCChH
Q 002115 351 EQLAFFGRSMEECEKLENMGRQIVRKCKGLPL 382 (965)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPl 382 (965)
++++..... .-+ +++..-|++.+.|.--
T Consensus 273 ~~~~~~~~~-~l~---~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 273 RKMLEIEHG-ELP---EEVLNFVAENVDDNLR 300 (440)
T ss_pred HHHHHhcCC-CCC---HHHHHHHHhccccCHH
Confidence 888743221 111 3456777777777543
No 151
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.62 E-value=0.00018 Score=77.91 Aligned_cols=66 Identities=29% Similarity=0.291 Sum_probs=40.8
Q ss_pred hhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCccccccccc
Q 002115 617 IENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVG 688 (965)
Q Consensus 617 i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~ 688 (965)
+..+.++++|++++|. ++.+|. -..+|++|++++|..+..+|..+ ..+|++|++++|..+..+|..
T Consensus 48 ~~~~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHhcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc
Confidence 4445667777777775 676662 12357777777766666666544 246777777766545555543
No 152
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0021 Score=73.14 Aligned_cols=166 Identities=19% Similarity=0.220 Sum_probs=94.8
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHH
Q 002115 177 ESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAI 256 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 256 (965)
+.+.+|.++.+++|+++|.-..-...-+-.++++||++|+|||.|++.+++. ..+.| +-++++.-.|..++-..
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a--l~Rkf---vR~sLGGvrDEAEIRGH- 395 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA--LGRKF---VRISLGGVRDEAEIRGH- 395 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH--hCCCE---EEEecCccccHHHhccc-
Confidence 4567999999999999985322112234479999999999999999999986 55555 22344444443332110
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchh----hchHhHHhhhcCC-C------------CCcEEE-
Q 002115 257 IESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVY----YKWEPFYKCLKNG-L------------HESKIL- 318 (965)
Q Consensus 257 ~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~-~------------~gs~il- 318 (965)
.+..-+.. ...+.+.+.+ .+.+.-+++||.++.... +.-..+...|.+. + -=|+|+
T Consensus 396 ----RRTYIGam-PGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 396 ----RRTYIGAM-PGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ----cccccccC-ChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 01111111 1233333332 346778999999854221 1112233333211 1 014444
Q ss_pred Eeecch-H-H-HhhcCCcceEeCCCCChHHHHHHHHHHh
Q 002115 319 ITTRKE-I-V-ARCMRSTNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 319 vTtR~~-~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
|||-+. . + +..+....++++.+.+++|-.+.-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 344332 1 2 2234557899999999999888777665
No 153
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.62 E-value=0.0019 Score=78.03 Aligned_cols=166 Identities=20% Similarity=0.247 Sum_probs=91.7
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHH
Q 002115 177 ESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAI 256 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 256 (965)
+.+.+|.++.+++|+++|............++.++|++|+||||+|+.+... ....| +-+.++...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEEcCCCCCHHHhccch
Confidence 4468999999999999886422111223458999999999999999999975 33333 223344433333222111
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhc----hHhHHhhhcCC---------------CCCcEE
Q 002115 257 IESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYK----WEPFYKCLKNG---------------LHESKI 317 (965)
Q Consensus 257 ~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~~---------------~~gs~i 317 (965)
+...+. ....+...+... ....-+++||.+....... ...+...+... -...-+
T Consensus 396 -~~~~g~-----~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 -RTYIGS-----MPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred -hccCCC-----CCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 111111 112233333322 2234478999996533211 23444444321 123344
Q ss_pred EEeecchHHHhh-cCCcceEeCCCCChHHHHHHHHHHh
Q 002115 318 LITTRKEIVARC-MRSTNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 318 lvTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
|.|+....+... .+-..++.+.++++++-.++.+++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 455544332222 2235688899999999888877765
No 154
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.61 E-value=0.00017 Score=67.14 Aligned_cols=96 Identities=22% Similarity=0.151 Sum_probs=53.5
Q ss_pred EEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCC-ceE
Q 002115 208 ISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEG-KKF 286 (965)
Q Consensus 208 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~-kr~ 286 (965)
|.|+|.+|+||||+|+.+++. ...+ .+.++.+.-.+. ........+...+.+.-.. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~~~---~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LGFP---FIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TTSE---EEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhh--cccc---cccccccccccc---------------cccccccccccccccccccccce
Confidence 579999999999999999987 3322 344444321100 1111122233333332223 489
Q ss_pred EEEEeCCCcchhhc-----------hHhHHhhhcCCC---CCcEEEEeecc
Q 002115 287 LLVLDDLWNEVYYK-----------WEPFYKCLKNGL---HESKILITTRK 323 (965)
Q Consensus 287 LlVlDdv~~~~~~~-----------~~~l~~~l~~~~---~gs~ilvTtR~ 323 (965)
+|++||+..-.... ...+...+.... .+..||.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999996532222 344555554432 23566777765
No 155
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.60 E-value=0.00066 Score=82.29 Aligned_cols=156 Identities=21% Similarity=0.240 Sum_probs=86.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccc---ccccc-cceEEEEcCCCCCHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDG---VKRNF-EKRIWVCVSEPFDEFRIA 253 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~vs~~~~~~~~~ 253 (965)
..++||+++++++++.|... ...-+.++|.+|+|||++|+.+++... +...+ ...+|. + +...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHh
Confidence 36899999999999988644 223467999999999999999987621 11112 334442 1 111111
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHh-CCceEEEEEeCCCcch---------hhchHhHHhhhcCCCCCcEEEEeecc
Q 002115 254 RAIIESLTGSASNFGEFQSLMQHIQECV-EGKKFLLVLDDLWNEV---------YYKWEPFYKCLKNGLHESKILITTRK 323 (965)
Q Consensus 254 ~~i~~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~ilvTtR~ 323 (965)
.. .. -..+.++....+.+.+ ..++.+|++|++..-. .+.-+.+...+..+ .-++|-+|..
T Consensus 251 a~-------~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~ 320 (731)
T TIGR02639 251 AG-------TK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTY 320 (731)
T ss_pred hh-------cc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCH
Confidence 10 00 0112222222222222 3467899999986321 11112233333322 2345555443
Q ss_pred hHHHh------hc-CCcceEeCCCCChHHHHHHHHHHh
Q 002115 324 EIVAR------CM-RSTNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 324 ~~v~~------~~-~~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
.+... .+ .-...++++.++.++..++++...
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 22111 11 124578999999999999998654
No 156
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.59 E-value=0.012 Score=64.16 Aligned_cols=138 Identities=16% Similarity=0.126 Sum_probs=84.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCC
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEG 283 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 283 (965)
....+.|+|..|.|||.|++++.+. ...+......++++ .+......+..+... -...+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~----se~f~~~~v~a~~~~---------~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLT----SEDFTNDFVKALRDN---------EMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEecc----HHHHHHHHHHHHHhh---------hHHHHHHhh--
Confidence 4668999999999999999999997 54555433344443 233444444333221 122344443
Q ss_pred ceEEEEEeCCCcch-hhchHh-HHhhhcCC-CCCcEEEEeecch---------HHHhhcCCcceEeCCCCChHHHHHHHH
Q 002115 284 KKFLLVLDDLWNEV-YYKWEP-FYKCLKNG-LHESKILITTRKE---------IVARCMRSTNVIYVNVLSEIECWSVFE 351 (965)
Q Consensus 284 kr~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 351 (965)
.-=++++||++.-. .+.|+. +...|..- ..|..||+|++.. .+...+...-++.+.+.+.+.....+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 33488999996521 112333 33333221 2344899999643 233445556799999999999999999
Q ss_pred HHhccCC
Q 002115 352 QLAFFGR 358 (965)
Q Consensus 352 ~~~~~~~ 358 (965)
+++....
T Consensus 255 kka~~~~ 261 (408)
T COG0593 255 KKAEDRG 261 (408)
T ss_pred HHHHhcC
Confidence 8765443
No 157
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.58 E-value=7.6e-06 Score=91.33 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=15.2
Q ss_pred hhhHhhhcCceeEEEeccccc
Q 002115 556 SISIWDHVKRLRSLLVESYEY 576 (965)
Q Consensus 556 ~~~~~~~~~~Lr~L~l~~~~~ 576 (965)
|.+++ .++.||.|.+.+++.
T Consensus 102 pi~if-pF~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 102 PISIF-PFRSLRVLELRGCDL 121 (1096)
T ss_pred Cceec-cccceeeEEecCcch
Confidence 55666 788888888887764
No 158
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.57 E-value=0.0032 Score=73.31 Aligned_cols=192 Identities=16% Similarity=0.121 Sum_probs=108.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.+++|.+...+.+.+++.... -...+.++|..|+||||+|+.+.+...-...- -..+++.-...+.|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~-------~~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP-------DGEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-------CCCCCCccHHHHHHh
Confidence 478999999999999986432 34567789999999999998887541100000 001111111122221
Q ss_pred HHhcCC-----CCCCCCHH---HHHHHHHH-HhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEee-cchHHH
Q 002115 258 ESLTGS-----ASNFGEFQ---SLMQHIQE-CVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITT-RKEIVA 327 (965)
Q Consensus 258 ~~l~~~-----~~~~~~~~---~l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~ 327 (965)
...... .......+ ++...+.. -..+++-++|+|++..-....+..+...+........+|++| ....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 110000 00011122 22222221 123566788999998765667777877776554455555544 443333
Q ss_pred hh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHH
Q 002115 328 RC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAK 385 (965)
Q Consensus 328 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 385 (965)
.. ......+.+.+++.++....+...+-..+-..+ .+....|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 22 233567889999999998888876633221111 2346778888888775443
No 159
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0019 Score=69.65 Aligned_cols=97 Identities=12% Similarity=0.111 Sum_probs=67.6
Q ss_pred CceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecch-HHH-hhcCCcceEeCCCCChHHHHHHHHHHhccCCCc
Q 002115 283 GKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKE-IVA-RCMRSTNVIYVNVLSEIECWSVFEQLAFFGRSM 360 (965)
Q Consensus 283 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 360 (965)
+++-++|+|++...+....+.+...+-.-..++.+|+||.+. .+. ....-...+.+.+++.+++.+.+.... ...
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccC--
Confidence 445566789998877778888888887765677777777664 332 223336789999999999999887653 111
Q ss_pred cchhHHHHHHHHHHHHcCCChHhHHHH
Q 002115 361 EECEKLENMGRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 361 ~~~~~l~~~~~~i~~~c~GlPlai~~~ 387 (965)
. .+.+..++..++|.|..+..+
T Consensus 182 -~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 122456789999999866544
No 160
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.54 E-value=0.0052 Score=75.03 Aligned_cols=165 Identities=18% Similarity=0.213 Sum_probs=86.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.+++|.++.+++|.+++............++.++|++|+|||++|+.+.+. ....| +-+.++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~---~~i~~~~~~~~~~i~g~-- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKF---VRFSLGGVRDEAEIRGH-- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCe---EEEeCCCcccHHHHcCC--
Confidence 458899999999998764321111223348999999999999999999986 43333 12233332233222110
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhh----chHhHHhhhcC--------C-------CCCcEEE
Q 002115 258 ESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYY----KWEPFYKCLKN--------G-------LHESKIL 318 (965)
Q Consensus 258 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~l~~~l~~--------~-------~~gs~il 318 (965)
...........+...+... ..++-+|+||.+...... .-..+...+.. . ..+.-+|
T Consensus 393 ----~~~~~g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 393 ----RRTYVGAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ----CCceeCCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 0000111122333334333 233448899998653211 11223332221 0 0223344
Q ss_pred EeecchH-HHhh-cCCcceEeCCCCChHHHHHHHHHHh
Q 002115 319 ITTRKEI-VARC-MRSTNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 319 vTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
.||.... +... ......+.+.+++.++-.++++++.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 5554321 1111 2234578899999988888876654
No 161
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.52 E-value=0.0065 Score=60.67 Aligned_cols=182 Identities=16% Similarity=0.201 Sum_probs=107.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcC-CCCCHHHHHHHHHHHhcCCCCCC--CCHHHHHHHHHHH
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVS-EPFDEFRIARAIIESLTGSASNF--GEFQSLMQHIQEC 280 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~--~~~~~l~~~l~~~ 280 (965)
+.+++.++|.-|.|||++.+..... ..+ +.++-|.+. +..+...+...|+..+..+.... ...++....+...
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 5569999999999999999944432 111 112223333 44567778888888877622111 1223333344443
Q ss_pred h-CCce-EEEEEeCCCcchhhchHhHHhhhcCCCCCc---EEEEeecch--------HHHhhcCCcce-EeCCCCChHHH
Q 002115 281 V-EGKK-FLLVLDDLWNEVYYKWEPFYKCLKNGLHES---KILITTRKE--------IVARCMRSTNV-IYVNVLSEIEC 346 (965)
Q Consensus 281 l-~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs---~ilvTtR~~--------~v~~~~~~~~~-~~l~~L~~~~~ 346 (965)
. +++| ..+++||.........+.++....-...++ +|+..-..+ ...+.-....+ |++.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 3 4777 899999997765555555554332211111 233322211 11111111234 89999999999
Q ss_pred HHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHh
Q 002115 347 WSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASL 390 (965)
Q Consensus 347 ~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~ 390 (965)
..+++.+.-+...+.+-. -.+....|..+..|.|.+|..++..
T Consensus 206 ~~yl~~~Le~a~~~~~l~-~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 206 GLYLRHRLEGAGLPEPLF-SDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHhccCCCcccC-ChhHHHHHHHHhccchHHHHHHHHH
Confidence 999988875553322211 1345677999999999999887643
No 162
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.52 E-value=0.00011 Score=52.65 Aligned_cols=41 Identities=29% Similarity=0.460 Sum_probs=33.6
Q ss_pred CccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccch
Q 002115 591 TCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPE 639 (965)
Q Consensus 591 ~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~ 639 (965)
++|++|+++ ++.+..+|..+++|++|++|++++|. ++.+|.
T Consensus 1 ~~L~~L~l~-------~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLS-------NNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEET-------SSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEcc-------CCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 478999999 55667888889999999999999999 877765
No 163
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.51 E-value=0.0025 Score=72.93 Aligned_cols=158 Identities=13% Similarity=0.109 Sum_probs=92.0
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccc--cceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNF--EKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVE 282 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 282 (965)
..-+.|+|..|+|||+|++.+.+. +...+ ..++|++.. .+...+...+... ..+.. .+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~~~----~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TMEEF----KEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHHHH----HHHHh
Confidence 346899999999999999999987 44443 234465443 3344444444221 12222 23333
Q ss_pred CceEEEEEeCCCcchhh-ch-HhHHhhhcC-CCCCcEEEEeecchH---------HHhhcCCcceEeCCCCChHHHHHHH
Q 002115 283 GKKFLLVLDDLWNEVYY-KW-EPFYKCLKN-GLHESKILITTRKEI---------VARCMRSTNVIYVNVLSEIECWSVF 350 (965)
Q Consensus 283 ~kr~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf 350 (965)
+.-+||+||+...... .+ +.+...+.. ...|..||+||.... +...+.....+++.+.+.++-.+++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 2448999999642111 11 223332221 123456888886431 1223344568999999999999999
Q ss_pred HHHhccCCCccchhHHHHHHHHHHHHcCCChHhH
Q 002115 351 EQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAA 384 (965)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai 384 (965)
++++-.... .- -+++..-|++.+.|..-.+
T Consensus 290 ~~~~~~~~~-~l---~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 290 KKKAEEEGI-DL---PDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHcCC-CC---CHHHHHHHHcCcCCCHHHH
Confidence 998753221 11 2345777888888876543
No 164
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.50 E-value=0.00076 Score=82.80 Aligned_cols=155 Identities=22% Similarity=0.252 Sum_probs=86.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccc---ccccc-cceEEEEcCCCCCHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDG---VKRNF-EKRIWVCVSEPFDEFRIA 253 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~vs~~~~~~~~~ 253 (965)
..++||+++++++++.|.... ..-+.++|.+|+|||++|+.++.... +.... +..+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh
Confidence 358999999999999996542 22456999999999999999887621 11111 244553 1 221111
Q ss_pred HHHHHHhcCCCCCCCCHHHHH-HHHHHHhCCceEEEEEeCCCcch-------hhchHh-HHhhhcCCCCCcEEEEeecch
Q 002115 254 RAIIESLTGSASNFGEFQSLM-QHIQECVEGKKFLLVLDDLWNEV-------YYKWEP-FYKCLKNGLHESKILITTRKE 324 (965)
Q Consensus 254 ~~i~~~l~~~~~~~~~~~~l~-~~l~~~l~~kr~LlVlDdv~~~~-------~~~~~~-l~~~l~~~~~gs~ilvTtR~~ 324 (965)
.+... ..+.++.. ..+.+.-..++.+|++|++..-. ...... +...+..+ .-++|-+|...
T Consensus 248 -------ag~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~~ 317 (821)
T CHL00095 248 -------AGTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTLD 317 (821)
T ss_pred -------ccCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCHH
Confidence 11111 12223222 22322223568999999984310 011222 33333322 24555555544
Q ss_pred HHHhh-------cCCcceEeCCCCChHHHHHHHHHH
Q 002115 325 IVARC-------MRSTNVIYVNVLSEIECWSVFEQL 353 (965)
Q Consensus 325 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 353 (965)
..... ......+.+...+.++...+++..
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 43221 122457788888999988887653
No 165
>PRK08116 hypothetical protein; Validated
Probab=97.49 E-value=0.00035 Score=73.26 Aligned_cols=104 Identities=24% Similarity=0.239 Sum_probs=60.6
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCce
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKK 285 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 285 (965)
.-+.++|..|+|||.||..+++. +..+-..+++++ ..+++..+........ ...... +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhccc--cccHHH----HHHHhcCCC
Confidence 35889999999999999999997 333333456664 3445555555443221 111222 223333333
Q ss_pred EEEEEeCCCcchhhchHh--HHhhhcCC-CCCcEEEEeecch
Q 002115 286 FLLVLDDLWNEVYYKWEP--FYKCLKNG-LHESKILITTRKE 324 (965)
Q Consensus 286 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~~ 324 (965)
||||||+..+...+|.. +...+... ..|..+||||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999995433334544 33333321 3556799999643
No 166
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.49 E-value=0.00078 Score=78.33 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=41.1
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 176 DESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 176 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.-.+++|.++.++++..|+....- .....+++.|+|++|+||||+++.+++.
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345799999999999999865432 1223458999999999999999999976
No 167
>PRK10536 hypothetical protein; Provisional
Probab=97.48 E-value=0.0023 Score=65.03 Aligned_cols=136 Identities=17% Similarity=0.201 Sum_probs=75.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEE--c--CC-----CCC
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVC--V--SE-----PFD 248 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~--v--s~-----~~~ 248 (965)
..+.++.........++.. ..+|.++|.+|.|||+||..+..+.-..+.|+..+-+. + ++ +-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 4567889999999998853 23999999999999999998877532234454433332 1 11 011
Q ss_pred HHHH----HHHHHHHhcCCCCCCCCHHHHHH--------HHHHHhCCceE---EEEEeCCCcchhhchHhHHhhhcCCCC
Q 002115 249 EFRI----ARAIIESLTGSASNFGEFQSLMQ--------HIQECVEGKKF---LLVLDDLWNEVYYKWEPFYKCLKNGLH 313 (965)
Q Consensus 249 ~~~~----~~~i~~~l~~~~~~~~~~~~l~~--------~l~~~l~~kr~---LlVlDdv~~~~~~~~~~l~~~l~~~~~ 313 (965)
..+= +.-+...+..-. +....+.... .=..+++|..+ +||+|.+.+.+.. .+...+...+.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~---~~k~~ltR~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAA---QMKMFLTRLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHH---HHHHHHhhcCC
Confidence 1111 111111111000 0011111110 00125566655 9999999886543 44444445567
Q ss_pred CcEEEEeecchH
Q 002115 314 ESKILITTRKEI 325 (965)
Q Consensus 314 gs~ilvTtR~~~ 325 (965)
+|++|+|--..+
T Consensus 203 ~sk~v~~GD~~Q 214 (262)
T PRK10536 203 NVTVIVNGDITQ 214 (262)
T ss_pred CCEEEEeCChhh
Confidence 899999875443
No 168
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0089 Score=67.80 Aligned_cols=167 Identities=17% Similarity=0.183 Sum_probs=94.3
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHH
Q 002115 176 DESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARA 255 (965)
Q Consensus 176 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 255 (965)
-+.+.+|.++.+++|++++.-..-.+..+-++++.+|++|+|||.+|+.++.. ..+.|. -++|+.-.|..++-..
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkFf---RfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKFF---RFSVGGMTDVAEIKGH 483 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCceE---EEeccccccHHhhccc
Confidence 35567999999999999986433223446679999999999999999999976 444441 2345554444332111
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchh----hchHhHHhhhcCC-C------------CCcEEE
Q 002115 256 IIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVY----YKWEPFYKCLKNG-L------------HESKIL 318 (965)
Q Consensus 256 i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~-~------------~gs~il 318 (965)
.+...+. -...+++.+++ .+..+-|+.+|.|+.... +.-..+...|.+. + -=|||+
T Consensus 484 -----RRTYVGA-MPGkiIq~LK~-v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 484 -----RRTYVGA-MPGKIIQCLKK-VKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred -----ceeeecc-CChHHHHHHHh-hCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 0011111 11233343433 245567888999854210 1111222222211 0 126776
Q ss_pred EeecchHHHh----hcCCcceEeCCCCChHHHHHHHHHHh
Q 002115 319 ITTRKEIVAR----CMRSTNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 319 vTtR~~~v~~----~~~~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
+..-...+.. .....+++++.+...+|-.++-.++.
T Consensus 557 FicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 5443322222 12335788999988888777666554
No 169
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.43 E-value=8.2e-06 Score=91.10 Aligned_cols=111 Identities=21% Similarity=0.218 Sum_probs=77.4
Q ss_pred chHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccch-hhhccCCCcEEeccCccccccc
Q 002115 583 LPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPE-TLCELYNLEHLDISYCRNLREL 661 (965)
Q Consensus 583 l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~LdL~~~~~l~~l 661 (965)
+..++.-++.|+.|+|+.|+++ .. ..+..|++|+.|||++|. +..+|. ....+. |+.|++++|. ++++
T Consensus 179 mD~SLqll~ale~LnLshNk~~-------~v-~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~-l~tL 247 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFT-------KV-DNLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNA-LTTL 247 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhh-------hh-HHHHhcccccccccccch-hccccccchhhhh-heeeeecccH-HHhh
Confidence 3445667788888999866654 22 267788899999999998 888886 233444 8999999887 7777
Q ss_pred CccccCCCCccEeecCCCccccccc--ccCCCcccccccCceEecCc
Q 002115 662 PQGIGKLRKLMYLENDGTYSLRYLP--VGIGELIRLRIVKEFVVGGG 706 (965)
Q Consensus 662 P~~i~~L~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~l~~~~~~ 706 (965)
.++.+|.+|++|++++|... ... .-++.|..|..|++-.|...
T Consensus 248 -~gie~LksL~~LDlsyNll~-~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 248 -RGIENLKSLYGLDLSYNLLS-EHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred -hhHHhhhhhhccchhHhhhh-cchhhhHHHHHHHHHHHhhcCCccc
Confidence 47888999999999888322 111 11455667777777665543
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.43 E-value=0.00083 Score=63.35 Aligned_cols=87 Identities=20% Similarity=0.149 Sum_probs=47.4
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCc-
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGK- 284 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k- 284 (965)
..+.|+|.+|+||||+|+.++.. ........+++..+........... ......... ..........+.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKA-SGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH-hhhhhccCC-CCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999986 3222223556655543322222211 111111111 122222223333333333
Q ss_pred eEEEEEeCCCcc
Q 002115 285 KFLLVLDDLWNE 296 (965)
Q Consensus 285 r~LlVlDdv~~~ 296 (965)
..+|++|+++..
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 489999999774
No 171
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.39 E-value=0.00012 Score=86.51 Aligned_cols=130 Identities=24% Similarity=0.274 Sum_probs=91.7
Q ss_pred ceEEEEEEEeCCCcc--chhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhh
Q 002115 540 KKVLHLMLNLDGRHL--VSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNI 617 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i 617 (965)
.++++|.+.+...-. -+......+|.||+|.+.+.... ...+...+.++++|+.||+| ++++..+ ..+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~--~~dF~~lc~sFpNL~sLDIS-------~TnI~nl-~GI 191 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD--NDDFSQLCASFPNLRSLDIS-------GTNISNL-SGI 191 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec--chhHHHHhhccCccceeecC-------CCCccCc-HHH
Confidence 567777776543221 23344557899999999986532 12244557899999999999 5555555 678
Q ss_pred hccCCCcEEEeCCccCccccc--hhhhccCCCcEEeccCcccccccCcc-------ccCCCCccEeecCCCcc
Q 002115 618 ENLLHLKYLNLAHQREIEKLP--ETLCELYNLEHLDISYCRNLRELPQG-------IGKLRKLMYLENDGTYS 681 (965)
Q Consensus 618 ~~L~~Lr~L~L~~~~~i~~lp--~~i~~L~~L~~LdL~~~~~l~~lP~~-------i~~L~~L~~L~l~~~~~ 681 (965)
++|++|+.|.+++-. +..-+ ..+.+|++|++||+|...... .|.- -..||+||+|+.+++..
T Consensus 192 S~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hccccHHHHhccCCC-CCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcch
Confidence 999999999998876 55433 257889999999999876332 2211 12489999999998743
No 172
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.38 E-value=2.5e-05 Score=69.14 Aligned_cols=104 Identities=18% Similarity=0.256 Sum_probs=61.7
Q ss_pred ccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhh-ccCCCcEEeccCcccccccCccccCCCC
Q 002115 592 CLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLC-ELYNLEHLDISYCRNLRELPQGIGKLRK 670 (965)
Q Consensus 592 ~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~-~L~~L~~LdL~~~~~l~~lP~~i~~L~~ 670 (965)
-+-.|+|+.|.+- .+...+..+....+|...+|++|. ++.+|+.|. +.+.+++|++.+|. +..+|..+..++.
T Consensus 28 E~h~ldLssc~lm----~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~a 101 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM----YIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPA 101 (177)
T ss_pred Hhhhcccccchhh----HHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHH
Confidence 3455666633221 122333444555666667777777 677776554 34467777777776 7777777777777
Q ss_pred ccEeecCCCcccccccccCCCcccccccCceE
Q 002115 671 LMYLENDGTYSLRYLPVGIGELIRLRIVKEFV 702 (965)
Q Consensus 671 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 702 (965)
|+.|+++.| .+...|.-|..|.+|-.|+.-.
T Consensus 102 Lr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 102 LRSLNLRFN-PLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred hhhcccccC-ccccchHHHHHHHhHHHhcCCC
Confidence 777777776 4445555555555555554433
No 173
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.34 E-value=0.0028 Score=78.15 Aligned_cols=136 Identities=15% Similarity=0.256 Sum_probs=82.0
Q ss_pred CccccchHHHHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIAR 254 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 254 (965)
..++|.+..++.+.+.+..... +......++.++|+.|+|||++|+.+... ....-...+.++++.-.+...+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH--
Confidence 4589999999999999875432 11223567889999999999999999875 2222223444555542221111
Q ss_pred HHHHHhcCCCCC---CCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC-----------CCcEEEEe
Q 002115 255 AIIESLTGSASN---FGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL-----------HESKILIT 320 (965)
Q Consensus 255 ~i~~~l~~~~~~---~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvT 320 (965)
..+.+..++ ..+...+...++. ....+|+||++.......+..+...+..+. ..+-||+|
T Consensus 641 ---~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 641 ---ARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred ---HHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 112121111 1122233333322 233499999998877778888888776542 23448888
Q ss_pred ecc
Q 002115 321 TRK 323 (965)
Q Consensus 321 tR~ 323 (965)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 865
No 174
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.0067 Score=64.85 Aligned_cols=96 Identities=9% Similarity=0.053 Sum_probs=67.2
Q ss_pred CceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecch-HHH-hhcCCcceEeCCCCChHHHHHHHHHHhccCCCc
Q 002115 283 GKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKE-IVA-RCMRSTNVIYVNVLSEIECWSVFEQLAFFGRSM 360 (965)
Q Consensus 283 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 360 (965)
+++-++|+|++...+...-..+...+-.-..++.+|++|... .+. ....-...+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~-- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG---V-- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC---C--
Confidence 566799999998876666677777776666677777777643 333 223346789999999999998887531 1
Q ss_pred cchhHHHHHHHHHHHHcCCChHhHHHHH
Q 002115 361 EECEKLENMGRQIVRKCKGLPLAAKTIA 388 (965)
Q Consensus 361 ~~~~~l~~~~~~i~~~c~GlPlai~~~~ 388 (965)
. +..+..++..++|.|+.+..+.
T Consensus 187 -~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 -S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1125678999999998775443
No 175
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.32 E-value=0.0051 Score=59.24 Aligned_cols=139 Identities=23% Similarity=0.182 Sum_probs=78.7
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccc---cc---------------ccccceEEEEc
Q 002115 182 GREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDG---VK---------------RNFEKRIWVCV 243 (965)
Q Consensus 182 Gr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~---------------~~F~~~~wv~v 243 (965)
|-++..+.+.+.+... .-...+.++|..|+||+|+|..+.+.-- .. .......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 4556667777766432 2345789999999999999987776411 11 11223334432
Q ss_pred CCC---CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEe
Q 002115 244 SEP---FDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILIT 320 (965)
Q Consensus 244 s~~---~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT 320 (965)
... ...+.+. .+...+.... ..+++=++|+|++...+.+.+..++..+-....++.+|++
T Consensus 76 ~~~~~~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 76 DKKKKSIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp TTSSSSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred ccccchhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 221 2222222 3333222111 1245678999999988888899999999888788999888
Q ss_pred ecchH-H-HhhcCCcceEeCCCCC
Q 002115 321 TRKEI-V-ARCMRSTNVIYVNVLS 342 (965)
Q Consensus 321 tR~~~-v-~~~~~~~~~~~l~~L~ 342 (965)
|.+.. + .....-...+.+.++|
T Consensus 139 t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 139 TNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp ES-GGGS-HHHHTTSEEEEE----
T ss_pred ECChHHChHHHHhhceEEecCCCC
Confidence 87653 2 2223335566666653
No 176
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.32 E-value=0.0028 Score=76.89 Aligned_cols=134 Identities=16% Similarity=0.229 Sum_probs=79.4
Q ss_pred CccccchHHHHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIAR 254 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 254 (965)
..++|.+..++.|.+.+..... +......++.++|+.|+|||+||+.+... . +...+.++.++-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc---
Confidence 3578999999999888764321 11224457899999999999999999875 2 23345666554222111
Q ss_pred HHHHHhcCCC--CCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC-----------CCcEEEEee
Q 002115 255 AIIESLTGSA--SNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL-----------HESKILITT 321 (965)
Q Consensus 255 ~i~~~l~~~~--~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTt 321 (965)
+...++... .+......+...++ ....-+|+||+++....+.++.+...+..+. ..+.||+||
T Consensus 526 -~~~lig~~~gyvg~~~~~~l~~~~~---~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Ts 601 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGLLTEAVR---KHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTS 601 (731)
T ss_pred -HHHHhcCCCCCcccchhhHHHHHHH---hCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECC
Confidence 111122111 11122223333332 1334599999998877777777877776541 234577777
Q ss_pred cc
Q 002115 322 RK 323 (965)
Q Consensus 322 R~ 323 (965)
..
T Consensus 602 n~ 603 (731)
T TIGR02639 602 NA 603 (731)
T ss_pred Cc
Confidence 43
No 177
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00078 Score=78.70 Aligned_cols=138 Identities=17% Similarity=0.311 Sum_probs=87.3
Q ss_pred CccccchHHHHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIAR 254 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 254 (965)
..++|.++.++.|.+.+..... +...+..+...+|+.|||||.||+.+... +-+.=+..+-+++|+-.. +
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy~E-----k 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEYME-----K 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHHHH-----H
Confidence 4689999999999998875443 13456678899999999999999998764 211113445554544222 2
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhCCceE-EEEEeCCCcchhhchHhHHhhhcCCC----C-------CcEEEEeec
Q 002115 255 AIIESLTGSASNFGEFQSLMQHIQECVEGKKF-LLVLDDLWNEVYYKWEPFYKCLKNGL----H-------ESKILITTR 322 (965)
Q Consensus 255 ~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~----~-------gs~ilvTtR 322 (965)
.-+..|-+..++--..++ ...|-+..+.++| +|.||.+....++..+.+...|.+|. . .+-||+||.
T Consensus 564 HsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN 642 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 642 (786)
T ss_pred HHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence 222333333332211111 2234445567777 88899998877777888888887653 2 356777775
Q ss_pred c
Q 002115 323 K 323 (965)
Q Consensus 323 ~ 323 (965)
-
T Consensus 643 ~ 643 (786)
T COG0542 643 A 643 (786)
T ss_pred c
Confidence 3
No 178
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.29 E-value=0.004 Score=70.59 Aligned_cols=165 Identities=15% Similarity=0.221 Sum_probs=90.2
Q ss_pred CccccchHHHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHHcccccccc-----ccceEEEEcCC
Q 002115 178 SEIFGREEEKNELVNRLLCESS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRN-----FEKRIWVCVSE 245 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~ 245 (965)
.++.|.+..+++|.+.+..+-. .+-..++-+.++|++|.|||++|+.+++. +..+ +....|+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 4578899999998887642110 01224556899999999999999999987 3222 12344555433
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-CCceEEEEEeCCCcch-------hhc-----hHhHHhhhcCC-
Q 002115 246 PFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECV-EGKKFLLVLDDLWNEV-------YYK-----WEPFYKCLKNG- 311 (965)
Q Consensus 246 ~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~-----~~~l~~~l~~~- 311 (965)
. .++....+. ....+..+....++.. .+++.+|+||+++.-. ..+ ...+...+...
T Consensus 260 ~--------eLl~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 260 P--------ELLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred h--------hhcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 1 111111000 0001111222222221 3578999999996421 011 12333333321
Q ss_pred -CCCcEEEEeecchHH-Hhhc-C---CcceEeCCCCChHHHHHHHHHHh
Q 002115 312 -LHESKILITTRKEIV-ARCM-R---STNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 312 -~~gs~ilvTtR~~~v-~~~~-~---~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
..+..||.||..... -..+ . -...+++...+.++..++|+.+.
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 134456666654332 1111 1 14468999999999999999876
No 179
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.28 E-value=0.0018 Score=77.45 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=86.3
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccc---cccc-ccceEEEEcCCCCCHHHHHH
Q 002115 179 EIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDG---VKRN-FEKRIWVCVSEPFDEFRIAR 254 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~-F~~~~wv~vs~~~~~~~~~~ 254 (965)
.++||+.+++++++.|.... ..-+.++|.+|+|||++|+.++.... +... .++.+|. .+...
T Consensus 187 ~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~-----l~~~~--- 252 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-----LDIGS--- 252 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe-----ccHHH---
Confidence 58999999999999997632 22446899999999999999886521 1111 1445552 11111
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHh-CCceEEEEEeCCCcc--------hhhchHhHHhhhcCCCCCcEEEEeecchH
Q 002115 255 AIIESLTGSASNFGEFQSLMQHIQECV-EGKKFLLVLDDLWNE--------VYYKWEPFYKCLKNGLHESKILITTRKEI 325 (965)
Q Consensus 255 ~i~~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 325 (965)
++ .+.. ...+.+.....+.+.+ +.++.+|++|++..- ...+...+..++... ..-+||-+|...+
T Consensus 253 -ll---aG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E 326 (758)
T PRK11034 253 -LL---AGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQE 326 (758)
T ss_pred -Hh---cccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHH
Confidence 11 1111 0112222222222222 345679999999531 111222233333222 1245555555443
Q ss_pred HHhh-------cCCcceEeCCCCChHHHHHHHHHHh
Q 002115 326 VARC-------MRSTNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 326 v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
.... ..-.+.+.++..+.++..++++...
T Consensus 327 ~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 3211 1123588999999999999988653
No 180
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.28 E-value=0.00012 Score=86.59 Aligned_cols=89 Identities=21% Similarity=0.089 Sum_probs=43.9
Q ss_pred CCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCH--hHHHHhhc
Q 002115 667 KLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDA--GEARRAEL 744 (965)
Q Consensus 667 ~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~--~~~~~~~l 744 (965)
+++||..||++++ .+..+ .+|++|++||+|.+.+..... ...+.+|-+|++|+.|+++........ .......-
T Consensus 171 sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe~e~--~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~ 246 (699)
T KOG3665|consen 171 SFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLEFES--YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECG 246 (699)
T ss_pred ccCccceeecCCC-CccCc-HHHhccccHHHHhccCCCCCc--hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhc
Confidence 4455555555554 22222 445555555555554444433 334445555666665555543332221 11122233
Q ss_pred cCCCCCCceEEEeec
Q 002115 745 EKKKNLSNLELHFDH 759 (965)
Q Consensus 745 ~~~~~L~~L~L~~~~ 759 (965)
..+++|+.|+.++..
T Consensus 247 ~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 247 MVLPELRFLDCSGTD 261 (699)
T ss_pred ccCccccEEecCCcc
Confidence 456788888888664
No 181
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.28 E-value=0.0025 Score=78.13 Aligned_cols=136 Identities=15% Similarity=0.250 Sum_probs=78.4
Q ss_pred CccccchHHHHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIAR 254 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 254 (965)
..++|.+..++.|...+..... ..+....++.++|+.|+|||++|+.+.+. .-+.-...+.+.++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-----~ 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-----K 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-----h
Confidence 3588999999999988864321 11223458899999999999999999864 211122334454443211 1
Q ss_pred HHHHHhcCCCCCC---CCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC-----------CCcEEEEe
Q 002115 255 AIIESLTGSASNF---GEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL-----------HESKILIT 320 (965)
Q Consensus 255 ~i~~~l~~~~~~~---~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvT 320 (965)
.....+.+..++. .....+...++ ....-+|+||++.......+..+...+..+. ..+-||+|
T Consensus 641 ~~~~~LiG~~pgy~g~~~~g~l~~~v~---~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~T 717 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEEGGYLTEAVR---RRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMT 717 (857)
T ss_pred hhHHHHhCCCCcccccchhHHHHHHHH---hCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEe
Confidence 1122222222111 11122222222 1223599999998766777777877775541 22347888
Q ss_pred ecc
Q 002115 321 TRK 323 (965)
Q Consensus 321 tR~ 323 (965)
|..
T Consensus 718 SN~ 720 (857)
T PRK10865 718 SNL 720 (857)
T ss_pred CCc
Confidence 875
No 182
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.0057 Score=66.53 Aligned_cols=163 Identities=11% Similarity=0.041 Sum_probs=91.4
Q ss_pred cccc-chHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 179 EIFG-REEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 179 ~~vG-r~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.++| -+..++.+.+.+... .-.....++|+.|+||||+|+.+.+..--....... .+..-...+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHh
Confidence 3566 566677777776432 245678999999999999998886541100000000 000000011110
Q ss_pred HHhcC------CCCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchH-H
Q 002115 258 ESLTG------SASNFGEFQSLMQHIQEC----VEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEI-V 326 (965)
Q Consensus 258 ~~l~~------~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v 326 (965)
..-.. .......++++.+.+... ..+.+=++|+|++...+...-+.+...+-.-..++.+|++|.+.. +
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 00000 000111223333322221 235566799999987666677778888877667777777776532 2
Q ss_pred Hh-hcCCcceEeCCCCChHHHHHHHHHH
Q 002115 327 AR-CMRSTNVIYVNVLSEIECWSVFEQL 353 (965)
Q Consensus 327 ~~-~~~~~~~~~l~~L~~~~~~~lf~~~ 353 (965)
.. .......+++.++++++..+.+...
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 22 2233678999999999998888653
No 183
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.26 E-value=0.00097 Score=67.41 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=29.9
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCV 243 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 243 (965)
-.++|+|..|.|||||+..+..+ ....|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 36889999999999999999987 7778977766643
No 184
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.24 E-value=0.0047 Score=68.80 Aligned_cols=119 Identities=21% Similarity=0.200 Sum_probs=76.3
Q ss_pred EEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceE
Q 002115 207 IISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKF 286 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~ 286 (965)
++.|.|+-++||||+++.+... ..+. .+++..-+......-+.+... .+...-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~~-----------------~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLLR-----------------AYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHHH-----------------HHHHhhccCCc
Confidence 9999999999999999776654 2222 555543322111111111111 11111112788
Q ss_pred EEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchHHHh-----h-cCCcceEeCCCCChHHHHHHH
Q 002115 287 LLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEIVAR-----C-MRSTNVIYVNVLSEIECWSVF 350 (965)
Q Consensus 287 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~-----~-~~~~~~~~l~~L~~~~~~~lf 350 (965)
.++||.|.. ...|......+.+..+. +|++|+-+..... . .+-...+.+.||+-.|...+-
T Consensus 97 yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 97 YIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred eEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 999999976 45899988888887666 8888887654322 2 233568889999999987654
No 185
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.24 E-value=0.0013 Score=73.26 Aligned_cols=157 Identities=20% Similarity=0.182 Sum_probs=87.1
Q ss_pred CccccchHHHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHH
Q 002115 178 SEIFGREEEKNELVNRLLCESS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEF 250 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (965)
.++.|.+..+++|.+.+.-.-. -+-...+-|.++|.+|.|||++|+.+++. ....| +.|..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 3578999998888887642111 01224456889999999999999999986 44444 2222111
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcch-----------hh---chHhHHhhhcC--CCCC
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEV-----------YY---KWEPFYKCLKN--GLHE 314 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-----------~~---~~~~l~~~l~~--~~~g 314 (965)
+ .....+ .....+...+.....+.+.+|+||++.... .. ....+...+.. ...+
T Consensus 253 -L----~~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -L----IQKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -h----hhhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 1 111111 011112222222234567899999874310 00 01112222221 1235
Q ss_pred cEEEEeecchHH-Hhhc----CCcceEeCCCCChHHHHHHHHHHh
Q 002115 315 SKILITTRKEIV-ARCM----RSTNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 315 s~ilvTtR~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
.+||.||..... ...+ .-...+.+...+.++..++|..+.
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 678888865433 2222 124578899999999999998765
No 186
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.041 Score=58.83 Aligned_cols=93 Identities=12% Similarity=0.062 Sum_probs=68.2
Q ss_pred CceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecch-HH-HhhcCCcceEeCCCCChHHHHHHHHHHhccCCCc
Q 002115 283 GKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKE-IV-ARCMRSTNVIYVNVLSEIECWSVFEQLAFFGRSM 360 (965)
Q Consensus 283 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 360 (965)
+++=++|+|++...+......+...+-.-..++.+|++|.+. .+ .....-...+.+.++++++..+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~-- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---I-- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---C--
Confidence 455689999998877778888988887776777777766653 33 3333446799999999999999886531 1
Q ss_pred cchhHHHHHHHHHHHHcCCChHhHHHH
Q 002115 361 EECEKLENMGRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 361 ~~~~~l~~~~~~i~~~c~GlPlai~~~ 387 (965)
. .+..++..++|.|+.+..+
T Consensus 182 ~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred c-------hHHHHHHHcCCCHHHHHHH
Confidence 1 1346789999999977654
No 187
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.20 E-value=0.016 Score=65.94 Aligned_cols=207 Identities=15% Similarity=0.094 Sum_probs=123.9
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccc------ccccccceEEEEcCCCCCHHHH
Q 002115 179 EIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDG------VKRNFEKRIWVCVSEPFDEFRI 252 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~------~~~~F~~~~wv~vs~~~~~~~~ 252 (965)
.+-+|+.+..+|.+++...-+. +..-+.+.|.|.+|.|||..+..|.+.-+ --..| ..+.|+.-.-..+.++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f-~yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKF-DYVEINGLRLASPREI 474 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCc-cEEEEcceeecCHHHH
Confidence 4568999999999988654432 23445999999999999999999998521 11234 2344555555679999
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhC-----CceEEEEEeCCCcchhhchHhHHhhhcC-CCCCcEEEEeecchH-
Q 002115 253 ARAIIESLTGSASNFGEFQSLMQHIQECVE-----GKKFLLVLDDLWNEVYYKWEPFYKCLKN-GLHESKILITTRKEI- 325 (965)
Q Consensus 253 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~-----~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~- 325 (965)
...|..++.+.... .......+..++. .+..+|++|+++.--...-+.+...|.. ..++||++|-+-...
T Consensus 475 Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 475 YEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTM 551 (767)
T ss_pred HHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccc
Confidence 99999999876532 2233344444443 4578899998744211112234444443 457788777653211
Q ss_pred -H-HhhcC-------CcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhh
Q 002115 326 -V-ARCMR-------STNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLL 391 (965)
Q Consensus 326 -v-~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l 391 (965)
. ...+. ....+...|.++++-.+....+..+.. .......+=++++++...|-.-.|+.+.-++.
T Consensus 552 dlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~-~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 552 DLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLD-AFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred cCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchh-hcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 0 11111 134566778888887777776654431 12233344456666666666655555554443
No 188
>PRK08118 topology modulation protein; Reviewed
Probab=97.20 E-value=0.00018 Score=69.59 Aligned_cols=34 Identities=32% Similarity=0.563 Sum_probs=27.8
Q ss_pred EEEEEecCCChHHHHHHHHHcccccc-ccccceEE
Q 002115 207 IISLVGMGGIGKTTLAQFAYNNDGVK-RNFEKRIW 240 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 240 (965)
.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999874443 45677775
No 189
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.19 E-value=0.0032 Score=77.61 Aligned_cols=154 Identities=20% Similarity=0.247 Sum_probs=83.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccccccc------ccceEEEEcCCCCCHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRN------FEKRIWVCVSEPFDEFR 251 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~vs~~~~~~~ 251 (965)
..++||+.+++++++.|... ...-+.++|.+|+|||++|+.+... +... ....+|.. +...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGA 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHH
Confidence 35899999999999999653 2234568999999999999988875 2111 12333321 1111
Q ss_pred HHHHHHHHhcCCCCCCCCHHH-HHHHHHHHhC-CceEEEEEeCCCcch--------hhchHhHHhhhcCCCCCcEEEEee
Q 002115 252 IARAIIESLTGSASNFGEFQS-LMQHIQECVE-GKKFLLVLDDLWNEV--------YYKWEPFYKCLKNGLHESKILITT 321 (965)
Q Consensus 252 ~~~~i~~~l~~~~~~~~~~~~-l~~~l~~~l~-~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvTt 321 (965)
+.. +... ..+.+. +...+...-+ +++.+|++|++..-. .+.-+.+...+.. ..-++|-+|
T Consensus 240 l~a-------~~~~-~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~--g~i~~IgaT 309 (852)
T TIGR03346 240 LIA-------GAKY-RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELHCIGAT 309 (852)
T ss_pred Hhh-------cchh-hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc--CceEEEEeC
Confidence 110 1000 112222 2222222222 468999999996421 0011112222211 123455555
Q ss_pred cchHHHhh-------cCCcceEeCCCCChHHHHHHHHHHh
Q 002115 322 RKEIVARC-------MRSTNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 322 R~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
........ ..-...+.+...+.++...+++...
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 44433211 1224568899899999999887653
No 190
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.19 E-value=0.0077 Score=66.81 Aligned_cols=157 Identities=16% Similarity=0.174 Sum_probs=86.7
Q ss_pred CccccchHHHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHH
Q 002115 178 SEIFGREEEKNELVNRLLCESS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEF 250 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (965)
.++.|.+..+++|.+.+..+-. -+-...+-|.++|++|.|||++|+.+++. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~------s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVG------S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEeh------H
Confidence 4688999888888876532110 01234567889999999999999999986 33333 12211 1
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcch-----------hh---chHhHHhhhcC--CCCC
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEV-----------YY---KWEPFYKCLKN--GLHE 314 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-----------~~---~~~~l~~~l~~--~~~g 314 (965)
.+ .....+. ....+...+.......+.+|++|++..-. .. .+..+...+.. ...+
T Consensus 214 ~l----~~k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 EF----VQKYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HH----HHHhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 11 1111110 11122222333334678999999975310 00 11222222222 2245
Q ss_pred cEEEEeecchH-HHhh-cC---CcceEeCCCCChHHHHHHHHHHh
Q 002115 315 SKILITTRKEI-VARC-MR---STNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 315 s~ilvTtR~~~-v~~~-~~---~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
..||.||.... +-.. .. -...+.+...+.++..++|+...
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 67888886543 2221 11 24568888888888888887654
No 191
>PRK12377 putative replication protein; Provisional
Probab=97.11 E-value=0.00095 Score=68.62 Aligned_cols=102 Identities=21% Similarity=0.117 Sum_probs=58.2
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGK 284 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 284 (965)
...+.|+|.+|+|||+||..+++. +......++++++. +++..+-..... ....... + +.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~~---l-~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEKF---L-QEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHHH---H-HHh-cC
Confidence 357899999999999999999987 33333445676553 444544433321 1111222 2 222 35
Q ss_pred eEEEEEeCCCcchhhchHh--HHhhhcCC-CCCcEEEEeecc
Q 002115 285 KFLLVLDDLWNEVYYKWEP--FYKCLKNG-LHESKILITTRK 323 (965)
Q Consensus 285 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 323 (965)
-=||||||+.......|.. +...+... ...--+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5699999995433334543 33333332 223347888864
No 192
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.09 E-value=0.0019 Score=78.96 Aligned_cols=136 Identities=21% Similarity=0.317 Sum_probs=80.1
Q ss_pred CccccchHHHHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIAR 254 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 254 (965)
..++|.+..++.|.+.+..... .......++.++|+.|+|||.||+.+... +-+.....+-++++.-.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhh----
Confidence 4689999999999999864321 12334568999999999999999888764 21212222333333211111
Q ss_pred HHHHHhcCCCCC---CCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC-----------CCcEEEEe
Q 002115 255 AIIESLTGSASN---FGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL-----------HESKILIT 320 (965)
Q Consensus 255 ~i~~~l~~~~~~---~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvT 320 (965)
-...+.+..++ ......+...+++ ...-+|+||++...+...++.+...+..+. ..+-||+|
T Consensus 640 -~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 640 -TVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred -hhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 11122222111 1122233333332 455699999998766677777777776553 45667777
Q ss_pred ecc
Q 002115 321 TRK 323 (965)
Q Consensus 321 tR~ 323 (965)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 764
No 193
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.05 E-value=0.0024 Score=65.47 Aligned_cols=103 Identities=16% Similarity=0.136 Sum_probs=58.1
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGK 284 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 284 (965)
...+.++|.+|+|||+||..+++.. ...-..+++++ ..++...+-..... .......+. +.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it------~~~l~~~l~~~~~~---~~~~~~~~l----~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIIT------VADIMSAMKDTFSN---SETSEEQLL----NDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEE------HHHHHHHHHHHHhh---ccccHHHHH----HHhc-c
Confidence 3478999999999999999999873 22223455654 34455544433321 111222222 2233 3
Q ss_pred eEEEEEeCCCcchhhchHh--HHhhhcCC-CCCcEEEEeecc
Q 002115 285 KFLLVLDDLWNEVYYKWEP--FYKCLKNG-LHESKILITTRK 323 (965)
Q Consensus 285 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 323 (965)
.=+||+||+.......|+. +...+... ...-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4488889997654455664 33333221 223457777764
No 194
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.028 Score=60.32 Aligned_cols=178 Identities=9% Similarity=0.032 Sum_probs=101.7
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhc----
Q 002115 186 EKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLT---- 261 (965)
Q Consensus 186 ~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~---- 261 (965)
..+.+.+.+... .-.....+.|+.|+||+++|+.+...--=..... ...+..=...+.+...-.
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~ 77 (325)
T PRK06871 10 TYQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFH 77 (325)
T ss_pred HHHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEE
Confidence 344555555432 2345788999999999999988776410000000 000100011111111000
Q ss_pred ---CCCCCCCCHHHHHH---HHHHH-hCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecch-HHH-hhcCC
Q 002115 262 ---GSASNFGEFQSLMQ---HIQEC-VEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKE-IVA-RCMRS 332 (965)
Q Consensus 262 ---~~~~~~~~~~~l~~---~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~ 332 (965)
........+++..+ .+... ..+++=++|+|++...+......+...+-.-..++.+|++|.+. .+. ....-
T Consensus 78 ~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 78 ILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred EEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 00001122333332 22211 13666788899998877778888888888777777887777654 333 22333
Q ss_pred cceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhH
Q 002115 333 TNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAA 384 (965)
Q Consensus 333 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai 384 (965)
...+.+.++++++..+.+...... .. ..+...+..++|.|..+
T Consensus 158 C~~~~~~~~~~~~~~~~L~~~~~~-----~~----~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 158 CQTWLIHPPEEQQALDWLQAQSSA-----EI----SEILTALRINYGRPLLA 200 (325)
T ss_pred ceEEeCCCCCHHHHHHHHHHHhcc-----Ch----HHHHHHHHHcCCCHHHH
Confidence 679999999999999888875311 11 12456788899999644
No 195
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.03 E-value=0.012 Score=57.46 Aligned_cols=65 Identities=18% Similarity=0.139 Sum_probs=43.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccc-cceEEEEcCCCCCH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNF-EKRIWVCVSEPFDE 249 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~ 249 (965)
.++||-++.++++.-.-. +++.+-+.|.|++|+||||-+..+.+. -....+ +.+.-.++|+...+
T Consensus 27 ~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr~-LLG~~~ke~vLELNASdeRGI 92 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLARE-LLGDSYKEAVLELNASDERGI 92 (333)
T ss_pred HHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHHH-HhChhhhhHhhhccCcccccc
Confidence 468999999988876653 336668899999999999988777764 122222 34444445544433
No 196
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.02 E-value=0.019 Score=60.33 Aligned_cols=110 Identities=16% Similarity=0.194 Sum_probs=58.8
Q ss_pred EEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH------------HHhcCCCCCC-CCHHHH
Q 002115 207 IISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII------------ESLTGSASNF-GEFQSL 273 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~------------~~l~~~~~~~-~~~~~l 273 (965)
-|.+.|.+|+|||++|+.+... ... ..++++.+...+..+++.... .......... ....
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~--lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 95 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARK--RDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWV-- 95 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH--hCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeec--
Confidence 4668999999999999999863 222 234566665555555433211 0000000000 0000
Q ss_pred HHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCC----------------CCCcEEEEeecch
Q 002115 274 MQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNG----------------LHESKILITTRKE 324 (965)
Q Consensus 274 ~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~----------------~~gs~ilvTtR~~ 324 (965)
...+.... .+...+++|++.....+.+..+...+..+ .++.+||+|+...
T Consensus 96 ~g~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 96 DNRLTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred CchHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 00111111 23468999999876555666666655321 1356788888753
No 197
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.02 E-value=0.006 Score=74.92 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=37.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..++||+.+++++++.|... ...-+.++|.+|+|||++|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999654 2235669999999999999998876
No 198
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.02 E-value=0.0033 Score=67.09 Aligned_cols=122 Identities=18% Similarity=0.187 Sum_probs=71.7
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhc
Q 002115 182 GREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLT 261 (965)
Q Consensus 182 Gr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 261 (965)
++....+...+++..-.. ....+-+.|+|..|+|||.||..+++... +.. ..+.+++++ .++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g-~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA-KKG-VSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcC-CCEEEEEHH------HHHHHHHHHHh
Confidence 455555555666643221 12345799999999999999999998732 222 235566553 45555544432
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHh--HHhhhcC-C-CCCcEEEEeecc
Q 002115 262 GSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEP--FYKCLKN-G-LHESKILITTRK 323 (965)
Q Consensus 262 ~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~~l~~-~-~~gs~ilvTtR~ 323 (965)
.. ...+ .+.. + .+-=||||||+-.+....|.. +...+.+ . ..+..+|+||..
T Consensus 205 ~~-----~~~~---~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG-----SVKE---KIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC-----cHHH---HHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11 1222 2222 2 345589999997765667764 4444422 2 245578888864
No 199
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.00 E-value=0.00074 Score=67.12 Aligned_cols=91 Identities=21% Similarity=0.087 Sum_probs=47.3
Q ss_pred cCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHh-----hccCCcE
Q 002115 745 EKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWIT-----SLTNLRV 819 (965)
Q Consensus 745 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~-----~l~~L~~ 819 (965)
..+.+|+.|+|..|.++-. .....-..++..+.|+.|.+..|........ +.+. ..++|..
T Consensus 211 ~y~~~LevLDlqDNtft~~-------------gS~~La~al~~W~~lrEL~lnDClls~~G~~-~v~~~f~e~~~p~l~~ 276 (388)
T COG5238 211 FYSHSLEVLDLQDNTFTLE-------------GSRYLADALCEWNLLRELRLNDCLLSNEGVK-SVLRRFNEKFVPNLMP 276 (388)
T ss_pred HHhCcceeeeccccchhhh-------------hHHHHHHHhcccchhhhccccchhhccccHH-HHHHHhhhhcCCCccc
Confidence 3445666677766654321 1112223445555667777776665442221 2222 3566777
Q ss_pred EEEecCCCCC------CCCC--CCCCCCcceeeecCCC
Q 002115 820 LSLFECRNCE------HLPP--LGKLPSIEVLEIYGVQ 849 (965)
Q Consensus 820 L~L~~~~~~~------~lp~--l~~L~~L~~L~L~~~~ 849 (965)
|...+|..-. .+|. -+.+|-|..|.+.++.
T Consensus 277 L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 277 LPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred cccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 7776664322 1222 3467777777776644
No 200
>CHL00176 ftsH cell division protein; Validated
Probab=96.98 E-value=0.0091 Score=70.24 Aligned_cols=177 Identities=19% Similarity=0.180 Sum_probs=95.4
Q ss_pred CccccchHHHHHHHH---HHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHH
Q 002115 178 SEIFGREEEKNELVN---RLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFR 251 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~---~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 251 (965)
.++.|.++.++++.+ ++..... -+....+-|.++|++|.|||+||+.+++.. ... |+.++.. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~p-----~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EVP-----FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC-----eeeccHH----H
Confidence 457888766555544 4332211 012234568999999999999999998762 222 3333211 1
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcch----------hhchHh----HHhhhcC--CCCCc
Q 002115 252 IARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEV----------YYKWEP----FYKCLKN--GLHES 315 (965)
Q Consensus 252 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~----l~~~l~~--~~~gs 315 (965)
+. ....+ .....+...+.......+.+|++||++.-. ...++. +...+.. ...+.
T Consensus 252 f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 11 11100 111233344445556788999999995321 112222 2222221 23455
Q ss_pred EEEEeecchHH-Hhhc-C---CcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCC
Q 002115 316 KILITTRKEIV-ARCM-R---STNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKG 379 (965)
Q Consensus 316 ~ilvTtR~~~v-~~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G 379 (965)
.||.||..... ...+ . -...+.+...+.++-.++++.++-.... .. ......+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SP----DVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-ch----hHHHHHHHhcCCC
Confidence 66667755332 2222 1 2467888888999999999887643111 11 1234567777777
No 201
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.97 E-value=0.018 Score=66.83 Aligned_cols=179 Identities=16% Similarity=0.138 Sum_probs=93.4
Q ss_pred CCccccchHHHHHHHHHHh---cCCC---CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHH
Q 002115 177 ESEIFGREEEKNELVNRLL---CESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEF 250 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (965)
-.+++|.++.++++.+.+. .... .+....+-+.++|++|.|||++|+.+++.. ... ++.++. .
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~ 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----S 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----H
Confidence 3468898876665554432 2110 012234568899999999999999999762 222 233321 1
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcch----------hhchHh----HHhhhcC--CCCC
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEV----------YYKWEP----FYKCLKN--GLHE 314 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~----l~~~l~~--~~~g 314 (965)
++. ....+ .....+...+.......+.+|++|+++.-. ...+.. +...+.. ...+
T Consensus 123 ~~~----~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 123 DFV----EMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HHH----HHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 111 11111 111233333444444567899999985411 111222 2222211 2234
Q ss_pred cEEEEeecchH-HHhhc----CCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCC
Q 002115 315 SKILITTRKEI-VARCM----RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGL 380 (965)
Q Consensus 315 s~ilvTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl 380 (965)
..||.||.... +-..+ .-...+.+...+.++-.++|+.+.-.... ....+ ...+++.+.|.
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~ 259 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGF 259 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCC
Confidence 45666665432 22211 12457888888888888888876533211 11112 34677777773
No 202
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.97 E-value=0.0034 Score=77.12 Aligned_cols=136 Identities=16% Similarity=0.228 Sum_probs=79.8
Q ss_pred CccccchHHHHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIAR 254 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 254 (965)
..++|.+..++.|.+.+..... +......++.++|+.|+|||+||+.+.+. +-+.-...+-++.+.-.+...+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccHHH
Confidence 4689999999999888864321 12233456789999999999999998864 211112334444544222222111
Q ss_pred HHHHHhcCC--CCCCCCHHHHHHHHHHHhCCce-EEEEEeCCCcchhhchHhHHhhhcCCC-----------CCcEEEEe
Q 002115 255 AIIESLTGS--ASNFGEFQSLMQHIQECVEGKK-FLLVLDDLWNEVYYKWEPFYKCLKNGL-----------HESKILIT 320 (965)
Q Consensus 255 ~i~~~l~~~--~~~~~~~~~l~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvT 320 (965)
-++.+ ..+..+...+ .+.++.++ -+|+||++...+.+.++.+...+..+. ..+-||+|
T Consensus 587 ----l~g~~~gyvg~~~~~~l----~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 587 ----LIGSPPGYVGYNEGGQL----TEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred ----hcCCCCcccCcCccchH----HHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 11111 1111122233 33344444 589999998877777888888776542 34567777
Q ss_pred ecc
Q 002115 321 TRK 323 (965)
Q Consensus 321 tR~ 323 (965)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 764
No 203
>PRK08181 transposase; Validated
Probab=96.90 E-value=0.0028 Score=66.08 Aligned_cols=100 Identities=21% Similarity=0.179 Sum_probs=55.7
Q ss_pred EEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceE
Q 002115 207 IISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKF 286 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~ 286 (965)
-+.++|.+|+|||.||..+.+. .......++|+.+ .+++..+..... ....+.....+ .+-=
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~~l-----~~~d 169 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR-----ELQLESAIAKL-----DKFD 169 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHHHH-----hcCC
Confidence 5899999999999999999875 2222334556543 445555533211 11222222222 2344
Q ss_pred EEEEeCCCcchhhchH--hHHhhhcCCCCCcEEEEeecch
Q 002115 287 LLVLDDLWNEVYYKWE--PFYKCLKNGLHESKILITTRKE 324 (965)
Q Consensus 287 LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~ilvTtR~~ 324 (965)
|||+||+.......|. .+...+...-.+..+||||...
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 9999999653332332 2333333221124688888754
No 204
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.90 E-value=0.0003 Score=62.56 Aligned_cols=88 Identities=19% Similarity=0.251 Sum_probs=52.6
Q ss_pred ceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhcc
Q 002115 565 RLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCEL 644 (965)
Q Consensus 565 ~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L 644 (965)
.|....+++|. +..+.+++-.+++.+..|+|+ ++.+..+|..+..++.||.|+++.|. +...|..|..|
T Consensus 54 el~~i~ls~N~---fk~fp~kft~kf~t~t~lNl~-------~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L 122 (177)
T KOG4579|consen 54 ELTKISLSDNG---FKKFPKKFTIKFPTATTLNLA-------NNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPL 122 (177)
T ss_pred eEEEEecccch---hhhCCHHHhhccchhhhhhcc-------hhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHH
Confidence 44445555554 333233333455566666666 45556666666667777777777776 66666666666
Q ss_pred CCCcEEeccCcccccccCcc
Q 002115 645 YNLEHLDISYCRNLRELPQG 664 (965)
Q Consensus 645 ~~L~~LdL~~~~~l~~lP~~ 664 (965)
.+|-.||..+|. ...+|.+
T Consensus 123 ~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 123 IKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HhHHHhcCCCCc-cccCcHH
Confidence 677777766665 5555544
No 205
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.89 E-value=0.00083 Score=72.96 Aligned_cols=65 Identities=17% Similarity=0.281 Sum_probs=35.7
Q ss_pred hhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCc
Q 002115 587 FDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQ 663 (965)
Q Consensus 587 ~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~ 663 (965)
+..+.+++.|++++ +.+..+|. -..+|+.|.+++|..+..+|..+. .+|+.|++++|..+..+|.
T Consensus 48 ~~~~~~l~~L~Is~-------c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKD-------CDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCC-------CCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 33456666666663 33344441 112466666666655666665442 4666666666644555654
No 206
>PRK06921 hypothetical protein; Provisional
Probab=96.88 E-value=0.0042 Score=65.03 Aligned_cols=99 Identities=24% Similarity=0.332 Sum_probs=55.3
Q ss_pred cEEEEEEecCCChHHHHHHHHHcccccccc-ccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCC
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRN-FEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEG 283 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 283 (965)
...+.++|..|+|||+||..+++. +... -..++|+... +++..+...+ +.....+.. + .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~~-~-~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKLNR-M-K 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHHHH-h-c
Confidence 457899999999999999999986 3332 3345676542 3333332221 111222222 2 2
Q ss_pred ceEEEEEeCCCc-----chhhchHh--HHhhhcCC-CCCcEEEEeecc
Q 002115 284 KKFLLVLDDLWN-----EVYYKWEP--FYKCLKNG-LHESKILITTRK 323 (965)
Q Consensus 284 kr~LlVlDdv~~-----~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 323 (965)
+-=||||||+.. +...+|.. +...+... ..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 345999999932 22234543 33333221 234568888864
No 207
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.87 E-value=0.0014 Score=64.03 Aligned_cols=102 Identities=24% Similarity=0.383 Sum_probs=51.5
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGK 284 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 284 (965)
..-+.|+|..|+|||.||..+.+... +..+ .+.|+.+ .+++..+- .... ..........+ . +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~-~~g~-~v~f~~~------~~L~~~l~----~~~~-~~~~~~~~~~l----~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAI-RKGY-SVLFITA------SDLLDELK----QSRS-DGSYEELLKRL----K-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHH-HTT---EEEEEH------HHHHHHHH----CCHC-CTTHCHHHHHH----H-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhc-cCCc-ceeEeec------Cceecccc----cccc-ccchhhhcCcc----c-c
Confidence 34799999999999999999987632 2222 3566644 34444442 2211 11222222222 2 2
Q ss_pred eEEEEEeCCCcchhhchHh--HHhhhcCCCCCcEEEEeecch
Q 002115 285 KFLLVLDDLWNEVYYKWEP--FYKCLKNGLHESKILITTRKE 324 (965)
Q Consensus 285 r~LlVlDdv~~~~~~~~~~--l~~~l~~~~~gs~ilvTtR~~ 324 (965)
-=||||||+-......|.. +...+...-....+||||...
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred ccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 3478899996544334433 222222211123588898754
No 208
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.87 E-value=0.0013 Score=62.86 Aligned_cols=92 Identities=27% Similarity=0.374 Sum_probs=68.4
Q ss_pred hhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCC--CCCCCCCCCCcceeeecCCCCceEeCcccc
Q 002115 782 LEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCE--HLPPLGKLPSIEVLEIYGVQSVKRVGNEFL 859 (965)
Q Consensus 782 ~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~--~lp~l~~L~~L~~L~L~~~~~l~~~~~~~~ 859 (965)
++.|..+++|.+|.+.+|.++. +.+..-..+++|..|.|.+|.+.+ ++.++..+|.|++|.+-+++.-..-.-..+
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~--I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~y 134 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITR--IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLY 134 (233)
T ss_pred cccCCCccccceEEecCCccee--eccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeE
Confidence 4567788999999999999988 543444578999999999998654 677799999999999998773222211111
Q ss_pred CCCCCCCCccccCCccccccccccc
Q 002115 860 GVESDTDGSSVIAFPKLKQLRFDEM 884 (965)
Q Consensus 860 ~~~~~~~~~~~~~f~~L~~L~l~~~ 884 (965)
.+-.+|+|+.|++.+-
T Consensus 135 ---------vl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 135 ---------VLYKLPSLRTLDFQKV 150 (233)
T ss_pred ---------EEEecCcceEeehhhh
Confidence 1236899999998763
No 209
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.86 E-value=0.0012 Score=70.72 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=43.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|.++.++++++++...........+++.++|++|.||||||+.+.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 379999999999999997655422445689999999999999999999886
No 210
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.018 Score=60.34 Aligned_cols=186 Identities=18% Similarity=0.181 Sum_probs=102.9
Q ss_pred ccccchHHHHHHHHHHhcCCCC-------CCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHH
Q 002115 179 EIFGREEEKNELVNRLLCESSK-------EQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFR 251 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 251 (965)
.+=|-++.+++|.+.+.-+-.+ +-..++=|.++|++|.|||-||++|+++ ....| +.|..
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----Irvvg------ 218 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVG------ 218 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEecc------
Confidence 3557788888888876432111 2346778999999999999999999997 44444 33322
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC-CceEEEEEeCCCcc-----------h---hhchHhHHhhhcCC--CCC
Q 002115 252 IARAIIESLTGSASNFGEFQSLMQHIQECVE-GKKFLLVLDDLWNE-----------V---YYKWEPFYKCLKNG--LHE 314 (965)
Q Consensus 252 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~-~kr~LlVlDdv~~~-----------~---~~~~~~l~~~l~~~--~~g 314 (965)
.++.+..-+ +-..+.+.+.+..+ ..+..|.+|.++.- + ....-++...+... ...
T Consensus 219 --SElVqKYiG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 219 --SELVQKYIG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred --HHHHHHHhc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 122222222 12345555655555 45888999988431 0 11222333444333 245
Q ss_pred cEEEEeecchHHHhh--cC---CcceEeCCCCChHHH-HHHHHHHhccCCCccchhHHHHHHHHHHHHcCCCh----HhH
Q 002115 315 SKILITTRKEIVARC--MR---STNVIYVNVLSEIEC-WSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLP----LAA 384 (965)
Q Consensus 315 s~ilvTtR~~~v~~~--~~---~~~~~~l~~L~~~~~-~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP----lai 384 (965)
.|||..|....+... +. -++.+++. |+.+++ .++|+-+.-. ......-++ +.+++.|.|.- -|+
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfp-lPd~~gR~~Il~IHtrk-M~l~~dvd~----e~la~~~~g~sGAdlkai 364 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFP-LPDEEGRAEILKIHTRK-MNLADDVDL----ELLARLTEGFSGADLKAI 364 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecC-CCCHHHHHHHHHHHhhh-ccCccCcCH----HHHHHhcCCCchHHHHHH
Confidence 789988865443221 11 25677777 555554 4566655422 222222333 44666666654 334
Q ss_pred HHHHHhh
Q 002115 385 KTIASLL 391 (965)
Q Consensus 385 ~~~~~~l 391 (965)
.+=|+++
T Consensus 365 ctEAGm~ 371 (406)
T COG1222 365 CTEAGMF 371 (406)
T ss_pred HHHHhHH
Confidence 4445544
No 211
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.85 E-value=0.013 Score=70.42 Aligned_cols=131 Identities=17% Similarity=0.268 Sum_probs=77.2
Q ss_pred ccccchHHHHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHH
Q 002115 179 EIFGREEEKNELVNRLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARA 255 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 255 (965)
.++|.++.++.|.+.+..... ........+.++|+.|+|||++|+.+... ... ..+.+++++-.....
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~---~~i~id~se~~~~~~---- 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERHT---- 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCC---CcEEeechhhccccc----
Confidence 478999999999988864311 11234567899999999999999999875 322 234445443222111
Q ss_pred HHHHhcCCCCCC---CCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC-----------CCcEEEEee
Q 002115 256 IIESLTGSASNF---GEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL-----------HESKILITT 321 (965)
Q Consensus 256 i~~~l~~~~~~~---~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTt 321 (965)
+ ..+.+..++. .....+...++ +...-+|+||++.....+.+..+...+..+. ..+-||+||
T Consensus 530 ~-~~LiG~~~gyvg~~~~g~L~~~v~---~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~Ts 605 (758)
T PRK11034 530 V-SRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_pred H-HHHcCCCCCcccccccchHHHHHH---hCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeC
Confidence 1 2222221111 11122222222 2334699999998877777777877775431 234477787
Q ss_pred c
Q 002115 322 R 322 (965)
Q Consensus 322 R 322 (965)
.
T Consensus 606 N 606 (758)
T PRK11034 606 N 606 (758)
T ss_pred C
Confidence 5
No 212
>PRK07261 topology modulation protein; Provisional
Probab=96.83 E-value=0.0028 Score=61.71 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=40.2
Q ss_pred EEEEEecCCChHHHHHHHHHcccccc-ccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCce
Q 002115 207 IISLVGMGGIGKTTLAQFAYNNDGVK-RNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKK 285 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 285 (965)
.|.|+|++|+||||||+.+.....+. -+.|...|-... ...+.++....+...+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---------------------QERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---------------------ccCCHHHHHHHHHHHHhCCC
Confidence 48899999999999999987652221 134555552111 11223445555566666555
Q ss_pred EEEEEeCCCc
Q 002115 286 FLLVLDDLWN 295 (965)
Q Consensus 286 ~LlVlDdv~~ 295 (965)
.|+|+...
T Consensus 61 --wIidg~~~ 68 (171)
T PRK07261 61 --WIIDGNYS 68 (171)
T ss_pred --EEEcCcch
Confidence 67788743
No 213
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.042 Score=59.43 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=66.6
Q ss_pred CceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecc-hHHH-hhcCCcceEeCCCCChHHHHHHHHHHhccCCCc
Q 002115 283 GKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRK-EIVA-RCMRSTNVIYVNVLSEIECWSVFEQLAFFGRSM 360 (965)
Q Consensus 283 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 360 (965)
+++=++|+|++...+...+..+...+-.-.+++.+|++|.+ ..+- ....-...+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 55668999999988888899999988877677766666654 4433 223346789999999999999887641 1
Q ss_pred cchhHHHHHHHHHHHHcCCChHhHHHHH
Q 002115 361 EECEKLENMGRQIVRKCKGLPLAAKTIA 388 (965)
Q Consensus 361 ~~~~~l~~~~~~i~~~c~GlPlai~~~~ 388 (965)
. + ...++..++|.|..+..+.
T Consensus 206 ~--~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 A--D-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred C--h-----HHHHHHHcCCCHHHHHHHH
Confidence 1 1 1235778899997665443
No 214
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.83 E-value=0.0076 Score=59.31 Aligned_cols=122 Identities=22% Similarity=0.295 Sum_probs=73.5
Q ss_pred CCCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHH
Q 002115 175 IDESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIAR 254 (965)
Q Consensus 175 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 254 (965)
++-..++|.+..++.+++--..-. .+...--|.+||.-|.||+.|++++.+. +.+..-. -|.|++. +
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k~----d--- 123 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDKE----D--- 123 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcHH----H---
Confidence 344568999999888887532211 1223457889999999999999999987 4444323 2333221 0
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCC-cchhhchHhHHhhhcCC---CCCcEEEEeecc
Q 002115 255 AIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLW-NEVYYKWEPFYKCLKNG---LHESKILITTRK 323 (965)
Q Consensus 255 ~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~-~~~~~~~~~l~~~l~~~---~~gs~ilvTtR~ 323 (965)
..++..+...|+ ...+||+|..||+. +++...+..++..+..+ .+...++..|.+
T Consensus 124 ------------l~~Lp~l~~~Lr--~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 124 ------------LATLPDLVELLR--ARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ------------HhhHHHHHHHHh--cCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 111122222222 24789999999985 33455777888887654 344445554443
No 215
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.82 E-value=0.037 Score=59.98 Aligned_cols=179 Identities=12% Similarity=0.051 Sum_probs=102.3
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccc---cccccccce-----EEEEcCCCCCHHHHHHHHH
Q 002115 186 EKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNND---GVKRNFEKR-----IWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 186 ~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~~F~~~-----~wv~vs~~~~~~~~~~~i~ 257 (965)
.-+++.+.+... .-...+.+.|..|+||+|+|..+...- .-...-.|. -++..+..+|...+
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (334)
T PRK07993 10 DYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL----- 79 (334)
T ss_pred HHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-----
Confidence 345566666432 245688899999999999998766531 000000000 00001111111100
Q ss_pred HHhcCCCC-CCCCHHHHHHHHHHH----hCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecch-HHH-hhc
Q 002115 258 ESLTGSAS-NFGEFQSLMQHIQEC----VEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKE-IVA-RCM 330 (965)
Q Consensus 258 ~~l~~~~~-~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~ 330 (965)
..... ....+++..+..... ..+++=++|+|+++..+...-..+...+-.-..++.+|++|.+. .+. ...
T Consensus 80 ---~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 80 ---TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred ---ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 00000 112333333322221 13667799999998877778888888887766777777777653 333 223
Q ss_pred CCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHH
Q 002115 331 RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKT 386 (965)
Q Consensus 331 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~ 386 (965)
.-...+.+.++++++..+.+.... + . . .+.+..++..++|.|..+..
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~-~-~---~----~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREV-T-M---S----QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHcc-C-C---C----HHHHHHHHHHcCCCHHHHHH
Confidence 346788999999999998886532 1 1 1 11256789999999975543
No 216
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.81 E-value=0.0069 Score=65.18 Aligned_cols=103 Identities=17% Similarity=0.093 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccc-cccc-eEEEEcCCC-CCHHHHHHHHHHHhcC
Q 002115 186 EKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKR-NFEK-RIWVCVSEP-FDEFRIARAIIESLTG 262 (965)
Q Consensus 186 ~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~-~~wv~vs~~-~~~~~~~~~i~~~l~~ 262 (965)
-..++++.+..-. .-..+.|+|.+|+|||||++.+.+. +.. +-+. .+|+.+.+. .++.++.+.+...+..
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 4556888776421 2246689999999999999998876 322 2233 367676654 5778888888887765
Q ss_pred CCCCCCCHHH-----HHHHHHHHh--CCceEEEEEeCCCc
Q 002115 263 SASNFGEFQS-----LMQHIQECV--EGKKFLLVLDDLWN 295 (965)
Q Consensus 263 ~~~~~~~~~~-----l~~~l~~~l--~~kr~LlVlDdv~~ 295 (965)
...+...... ....+.+++ .+++.+||+|++..
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 4432222111 111222222 58999999999943
No 217
>PRK06526 transposase; Provisional
Probab=96.79 E-value=0.0029 Score=65.62 Aligned_cols=100 Identities=16% Similarity=0.206 Sum_probs=53.0
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCce
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKK 285 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 285 (965)
..+.|+|.+|+|||+||..+...... ..+ .+.|+ +..++...+..... . . .+...+.+. .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~-~g~-~v~f~------t~~~l~~~l~~~~~----~-~---~~~~~l~~l--~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQ-AGH-RVLFA------TAAQWVARLAAAHH----A-G---RLQAELVKL--GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHH-CCC-chhhh------hHHHHHHHHHHHHh----c-C---cHHHHHHHh--ccC
Confidence 46899999999999999999875321 122 23343 33344444433211 1 1 122223322 234
Q ss_pred EEEEEeCCCcchhhchH--hHHhhhcCC-CCCcEEEEeecch
Q 002115 286 FLLVLDDLWNEVYYKWE--PFYKCLKNG-LHESKILITTRKE 324 (965)
Q Consensus 286 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR~~ 324 (965)
-+||+||+.......|. .+...+... ..+ .+|+||...
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 58999999643222222 233333221 234 488888754
No 218
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.78 E-value=0.0062 Score=67.77 Aligned_cols=152 Identities=15% Similarity=0.204 Sum_probs=82.6
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHH-H
Q 002115 179 EIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAI-I 257 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i-~ 257 (965)
.++||++.++.+...+.... -|.|.|.+|+|||++|+.+.......+.|.. +.+.- ..+.+++..+ +
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~---~~~~f-ttp~DLfG~l~i 88 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFEY---LMTRF-STPEEVFGPLSI 88 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCccee---eeeee-cCcHHhcCcHHH
Confidence 58999999999999887543 5889999999999999999875222223321 11110 0122222211 1
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhCC---ceEEEEEeCCCcchhhchHhHHhhhcCCC---------CCcEEEEeecchH
Q 002115 258 ESLTGSASNFGEFQSLMQHIQECVEG---KKFLLVLDDLWNEVYYKWEPFYKCLKNGL---------HESKILITTRKEI 325 (965)
Q Consensus 258 ~~l~~~~~~~~~~~~l~~~l~~~l~~---kr~LlVlDdv~~~~~~~~~~l~~~l~~~~---------~gs~ilvTtR~~~ 325 (965)
..... .. .+.+...| .-=++++|+++......-..+...+.... -..+++|++.+.-
T Consensus 89 ~~~~~----~g-------~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~L 157 (498)
T PRK13531 89 QALKD----EG-------RYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNEL 157 (498)
T ss_pred hhhhh----cC-------chhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCC
Confidence 11100 00 01111111 11189999999876666666666663221 1235655555432
Q ss_pred HH------hhcCC-cceEeCCCCCh-HHHHHHHHHH
Q 002115 326 VA------RCMRS-TNVIYVNVLSE-IECWSVFEQL 353 (965)
Q Consensus 326 v~------~~~~~-~~~~~l~~L~~-~~~~~lf~~~ 353 (965)
.. ....- .-.+.++++++ ++-.+++...
T Consensus 158 PE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 158 PEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred cccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 11 11111 23677889975 4447777653
No 219
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.046 Score=59.97 Aligned_cols=149 Identities=20% Similarity=0.209 Sum_probs=85.9
Q ss_pred CCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 002115 202 QKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECV 281 (965)
Q Consensus 202 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l 281 (965)
..++..+.+.|++|+|||+||..+... ..|..+--++...-. +. .+......+.......-
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~mi-------------G~--sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDMI-------------GL--SESAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHcc-------------Cc--cHHHHHHHHHHHHHHhh
Confidence 456778899999999999999999865 567554433211100 00 01111222333334444
Q ss_pred CCceEEEEEeCCCcchhhchH------------hHHhhhcCC-CCCcE--EEEeecchHHHhhcCC----cceEeCCCCC
Q 002115 282 EGKKFLLVLDDLWNEVYYKWE------------PFYKCLKNG-LHESK--ILITTRKEIVARCMRS----TNVIYVNVLS 342 (965)
Q Consensus 282 ~~kr~LlVlDdv~~~~~~~~~------------~l~~~l~~~-~~gs~--ilvTtR~~~v~~~~~~----~~~~~l~~L~ 342 (965)
++.--.||+||+.. .-+|- .+.-.+... ..|-| |+-||....|.+.|+- ...|.+..++
T Consensus 596 kS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 56778999999954 12222 222223222 23334 4457777778777654 4578888888
Q ss_pred h-HHHHHHHHHHh-ccCCCccchhHHHHHHHHHHHHc
Q 002115 343 E-IECWSVFEQLA-FFGRSMEECEKLENMGRQIVRKC 377 (965)
Q Consensus 343 ~-~~~~~lf~~~~-~~~~~~~~~~~l~~~~~~i~~~c 377 (965)
. ++..+.++..- |. +...+.++++.+.+|
T Consensus 674 ~~~~~~~vl~~~n~fs------d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELNIFS------DDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHccCCC------cchhHHHHHHHhccc
Confidence 7 77777777653 22 223445566666666
No 220
>PRK09183 transposase/IS protein; Provisional
Probab=96.75 E-value=0.0049 Score=64.42 Aligned_cols=101 Identities=20% Similarity=0.208 Sum_probs=52.9
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCce
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKK 285 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 285 (965)
..+.|+|.+|+|||+||..+.+....++ + .+.++. ..++...+...... . .+...+++.+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G-~-~v~~~~------~~~l~~~l~~a~~~-----~---~~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAG-I-KVRFTT------AADLLLQLSTAQRQ-----G---RYKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcC-C-eEEEEe------HHHHHHHHHHHHHC-----C---cHHHHHHHHh-cCC
Confidence 3678999999999999999976522221 2 233443 23343333222111 0 1222232322 344
Q ss_pred EEEEEeCCCcchhhchH--hHHhhhcCC-CCCcEEEEeecch
Q 002115 286 FLLVLDDLWNEVYYKWE--PFYKCLKNG-LHESKILITTRKE 324 (965)
Q Consensus 286 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR~~ 324 (965)
-++|+||+.......+. .+...+... ..++ +|+||...
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 59999999753222333 233333221 2344 88888653
No 221
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.00048 Score=69.33 Aligned_cols=59 Identities=25% Similarity=0.259 Sum_probs=40.3
Q ss_pred ccCCCcEEEeCCccCcccc---chhhhccCCCcEEeccCcccccccCccc-cCCCCccEeecCCC
Q 002115 619 NLLHLKYLNLAHQREIEKL---PETLCELYNLEHLDISYCRNLRELPQGI-GKLRKLMYLENDGT 679 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~~l---p~~i~~L~~L~~LdL~~~~~l~~lP~~i-~~L~~L~~L~l~~~ 679 (965)
...+++.|||.+|. +..- ..-+.+|+.|++|+|+.|. +...-..+ -.+.+|+.|-+.++
T Consensus 69 ~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 69 SVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNGT 131 (418)
T ss_pred Hhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCc-CCCccccCcccccceEEEEEcCC
Confidence 56789999999998 5543 3345678999999999887 43211111 24567888877666
No 222
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.71 E-value=0.012 Score=64.49 Aligned_cols=142 Identities=18% Similarity=0.158 Sum_probs=86.9
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccc-------------------cccceE
Q 002115 179 EIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKR-------------------NFEKRI 239 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 239 (965)
.++|-+....++..+..... .....+.++|++|+||||+|..+.+...-.. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 46778888888888886432 1334699999999999999998887521000 113344
Q ss_pred EEEcCCCCC---HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcE
Q 002115 240 WVCVSEPFD---EFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESK 316 (965)
Q Consensus 240 wv~vs~~~~---~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 316 (965)
.+..+.... ..+..+++.+....... .++.-++++|+++..+.++-..+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 444444433 23333333333222110 36678999999988766666667776666667788
Q ss_pred EEEeecc-hHHHhhc-CCcceEeCCC
Q 002115 317 ILITTRK-EIVARCM-RSTNVIYVNV 340 (965)
Q Consensus 317 ilvTtR~-~~v~~~~-~~~~~~~l~~ 340 (965)
+|++|.. ..+...+ .....+++.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCC
Confidence 8888873 2332222 2255677776
No 223
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.70 E-value=0.079 Score=58.03 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 184 EEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 184 ~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+.-.+.+.+.+...+ .....+|+|.|.=|+||||+.+++.+.
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445667777776543 246789999999999999999999876
No 224
>PHA00729 NTP-binding motif containing protein
Probab=96.70 E-value=0.012 Score=58.91 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999999875
No 225
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.69 E-value=0.0024 Score=63.13 Aligned_cols=133 Identities=23% Similarity=0.199 Sum_probs=64.4
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcC----CC--CCHHH---
Q 002115 181 FGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVS----EP--FDEFR--- 251 (965)
Q Consensus 181 vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~--~~~~~--- 251 (965)
..+..+....++.|.. ..++.+.|++|.|||.||....-+.-..+.|+..+++.-. +. |-+-+
T Consensus 3 ~p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp ---SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS------
T ss_pred cCCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHH
Confidence 3456677777777762 2399999999999999998887665455788888777421 11 00000
Q ss_pred ----HHHHHHHHhcCCCCCCCCHHHHHHH------HHHHhCCc---eEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEE
Q 002115 252 ----IARAIIESLTGSASNFGEFQSLMQH------IQECVEGK---KFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKIL 318 (965)
Q Consensus 252 ----~~~~i~~~l~~~~~~~~~~~~l~~~------l~~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 318 (965)
.+.-+...+..-. .....+.+... -..+++|+ ..+||+|++.+....++..+ +-..+.|||||
T Consensus 75 K~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii 150 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKII 150 (205)
T ss_dssp ---TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEE
T ss_pred HHHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEE
Confidence 0111111111100 11122222211 01134554 45999999988765555554 44456789999
Q ss_pred EeecchH
Q 002115 319 ITTRKEI 325 (965)
Q Consensus 319 vTtR~~~ 325 (965)
++--..+
T Consensus 151 ~~GD~~Q 157 (205)
T PF02562_consen 151 ITGDPSQ 157 (205)
T ss_dssp EEE----
T ss_pred EecCcee
Confidence 9875543
No 226
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.65 E-value=0.0066 Score=68.34 Aligned_cols=189 Identities=16% Similarity=0.161 Sum_probs=113.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
+++||.+.....+...+.... -..--...|.-|+||||+|+-+...-- |.-| ....++..-...+.|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalN------C~~~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALN------CENG-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhc------CCCC-CCCCcchhhhhhHhhh
Confidence 467999999999999886432 234556789999999999988876411 1111 1122222222333333
Q ss_pred HHhc--------CCCCCCCCHHHHHHHHHHHh-CCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecch-HHH
Q 002115 258 ESLT--------GSASNFGEFQSLMQHIQECV-EGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKE-IVA 327 (965)
Q Consensus 258 ~~l~--------~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~ 327 (965)
..-. ....+.+++.++.+.+...= .++-=+.|+|.|.-.+...|..+..-+-.-....+.|+.|.+. .+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 2200 00111222333333322211 3455589999998777788999888887666666766666543 332
Q ss_pred -hhcCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChH
Q 002115 328 -RCMRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPL 382 (965)
Q Consensus 328 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPl 382 (965)
......+.|.++.++.++-...+...+-......+ ++....|++..+|..-
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCChh
Confidence 33455789999999999999988887754433222 2335557777777443
No 227
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.61 E-value=0.0029 Score=68.05 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=55.4
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCce
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKK 285 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 285 (965)
.-+.++|..|+|||.||..+++... ..-..++|+++. ++...+...-... ..+... .+ +.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~--~~g~~V~y~t~~------~l~~~l~~~~~~~---~~~~~~---~~-~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL--DRGKSVIYRTAD------ELIEILREIRFNN---DKELEE---VY-DLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEEHH------HHHHHHHHHHhcc---chhHHH---HH-HHhc-cC
Confidence 5699999999999999999998732 222345666543 3333333211111 111111 12 2222 22
Q ss_pred EEEEEeCCCcchhhchHh--HHhhhcCC-CCCcEEEEeecc
Q 002115 286 FLLVLDDLWNEVYYKWEP--FYKCLKNG-LHESKILITTRK 323 (965)
Q Consensus 286 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 323 (965)
=|||+||+..+....|.. +...+... ..+..+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 489999996543333432 33333322 234568888864
No 228
>PRK04296 thymidine kinase; Provisional
Probab=96.58 E-value=0.0051 Score=61.10 Aligned_cols=113 Identities=12% Similarity=-0.044 Sum_probs=61.9
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCC--CCCHHHHHHHHHHHhCC
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASN--FGEFQSLMQHIQECVEG 283 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~l~~~l~~ 283 (965)
.++.|+|..|.||||+|...... ...+-..++.+. ..++.+.....+++.++..... ....+++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 37889999999999999888765 222322333331 1122222233455555432111 2234455555554 333
Q ss_pred ceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchH
Q 002115 284 KKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEI 325 (965)
Q Consensus 284 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 325 (965)
+.-+||+|.+.--+.++..++...+ ...|..||+|.+...
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 4458999999543222223333333 235788999998743
No 229
>PRK04132 replication factor C small subunit; Provisional
Probab=96.58 E-value=0.056 Score=65.09 Aligned_cols=155 Identities=10% Similarity=-0.036 Sum_probs=98.3
Q ss_pred cCCChHHHHHHHHHccccccccc-cceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEe
Q 002115 213 MGGIGKTTLAQFAYNNDGVKRNF-EKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLD 291 (965)
Q Consensus 213 ~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlD 291 (965)
+.++||||+|..++++. ..+.+ ...+-+++|+...... .++++..+....+- -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINV-IREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 67899999999999872 11222 2356777776555543 33443333211110 01245799999
Q ss_pred CCCcchhhchHhHHhhhcCCCCCcEEEEeecch-HHHhh-cCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHH
Q 002115 292 DLWNEVYYKWEPFYKCLKNGLHESKILITTRKE-IVARC-MRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENM 369 (965)
Q Consensus 292 dv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~ 369 (965)
+++..+..+...++..+-.....+++|++|... .+... ...+..+++.+++.++-...+...+....-..+ ++.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~----~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC----HHH
Confidence 998877777788888777655566777766543 33322 233679999999999998888876543221111 335
Q ss_pred HHHHHHHcCCChHhHHHH
Q 002115 370 GRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 370 ~~~i~~~c~GlPlai~~~ 387 (965)
...|++.|+|.+-.+..+
T Consensus 714 L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 714 LQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 778999999988555433
No 230
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.58 E-value=0.0029 Score=59.29 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=62.7
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccc-cccccceEEEEcCCCCCHHHHHHHHHHH
Q 002115 181 FGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGV-KRNFEKRIWVCVSEPFDEFRIARAIIES 259 (965)
Q Consensus 181 vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 259 (965)
||....++++.+.+..-.. ...-|.|+|..|+||+++|+.++..... ...|... .... .. .+++++
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~-~~-----~~~l~~ 67 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS-LP-----AELLEQ 67 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC-TC-----HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh-Cc-----HHHHHH
Confidence 5777777777777754322 3346789999999999999999876221 1122110 1111 00 111111
Q ss_pred hcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCC-CCCcEEEEeecch
Q 002115 260 LTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNG-LHESKILITTRKE 324 (965)
Q Consensus 260 l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~ 324 (965)
.+.--|+++|+..-+......+...+... ....|+|.||...
T Consensus 68 -----------------------a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 68 -----------------------AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -----------------------CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -----------------------cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 13445779999776555566677766643 5678999999754
No 231
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.56 E-value=0.0023 Score=66.40 Aligned_cols=82 Identities=22% Similarity=0.207 Sum_probs=49.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCC
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEG 283 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 283 (965)
...-+.++|.+|+|||.||.++.++.- +.. -.+.++++ .++..++...... ......+.+.+ .
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g-~sv~f~~~------~el~~~Lk~~~~~--------~~~~~~l~~~l-~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAG-ISVLFITA------PDLLSKLKAAFDE--------GRLEEKLLREL-K 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcC-CeEEEEEH------HHHHHHHHHHHhc--------CchHHHHHHHh-h
Confidence 344789999999999999999999833 222 24556544 3555555554432 11222222222 2
Q ss_pred ceEEEEEeCCCcchhhchH
Q 002115 284 KKFLLVLDDLWNEVYYKWE 302 (965)
Q Consensus 284 kr~LlVlDdv~~~~~~~~~ 302 (965)
+-=||||||+-......|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 2348999999665444554
No 232
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.54 E-value=0.0078 Score=61.14 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=37.3
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHH
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIAR 254 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 254 (965)
..-.++.|+|.+|+|||++|.++... ....-..++|++... +++..+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 34679999999999999999988765 323346788999876 66665544
No 233
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.52 E-value=0.011 Score=57.09 Aligned_cols=131 Identities=18% Similarity=0.194 Sum_probs=66.2
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHH
Q 002115 180 IFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIES 259 (965)
Q Consensus 180 ~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 259 (965)
++|....+.++++.+..... ...-|.|+|..|.||+.+|+.+++... ..-..-+-|+++. .+.+.+-..+.-.
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s~--r~~~pfi~vnc~~-~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNSP--RKNGPFISVNCAA-LPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCST--TTTS-EEEEETTT-S-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhhh--cccCCeEEEehhh-hhcchhhhhhhcc
Confidence 47888888888888765433 223566999999999999999998521 1122233444443 2333332233211
Q ss_pred hcCCCCCC--CCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCC------C-----CCcEEEEeecch
Q 002115 260 LTGSASNF--GEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNG------L-----HESKILITTRKE 324 (965)
Q Consensus 260 l~~~~~~~--~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------~-----~gs~ilvTtR~~ 324 (965)
-.+...+. .... .+.. -..=-|+||++..-....-..+...+..+ . ...|||.||...
T Consensus 74 ~~~~~~~~~~~~~G----~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 74 EKGAFTGARSDKKG----LLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp CSSSSTTTSSEBEH----HHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccccccccCC----ceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 11111111 1111 1111 12335789999775443334455555422 1 257888888753
No 234
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.51 E-value=0.087 Score=57.45 Aligned_cols=203 Identities=11% Similarity=0.127 Sum_probs=119.9
Q ss_pred chHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHH-HHHHccccccccccceEEEEcCC---CCCHHHHHHHHHH
Q 002115 183 REEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLA-QFAYNNDGVKRNFEKRIWVCVSE---PFDEFRIARAIIE 258 (965)
Q Consensus 183 r~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~~ 258 (965)
|.+..+++..||... .-..|.|.|+-|.||+.|+ .++.++.+ .+..+++.+ ..+-..+.+.++.
T Consensus 1 R~e~~~~L~~wL~e~------~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN------PNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcC------CCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHH
Confidence 567889999999754 3358999999999999999 88877622 145555432 2233444555555
Q ss_pred Hhc-----------------------CCCCCC-CC-HHHHHHH-------HHH-------------------Hh---CCc
Q 002115 259 SLT-----------------------GSASNF-GE-FQSLMQH-------IQE-------------------CV---EGK 284 (965)
Q Consensus 259 ~l~-----------------------~~~~~~-~~-~~~l~~~-------l~~-------------------~l---~~k 284 (965)
+++ +...+. .. ..++... |++ ++ -.+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 543 222221 11 1122221 111 01 023
Q ss_pred eEEEEEeCCCcch---hhchHhHHhh---hcCCCCCcEEEEeecchHHHh----hcC--CcceEeCCCCChHHHHHHHHH
Q 002115 285 KFLLVLDDLWNEV---YYKWEPFYKC---LKNGLHESKILITTRKEIVAR----CMR--STNVIYVNVLSEIECWSVFEQ 352 (965)
Q Consensus 285 r~LlVlDdv~~~~---~~~~~~l~~~---l~~~~~gs~ilvTtR~~~v~~----~~~--~~~~~~l~~L~~~~~~~lf~~ 352 (965)
|-+||+|+.-... ..-|+.+... +- ..+=.+||++|-+..... .+. ....+.|...+.+.|..+...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 6799999985421 1122333221 11 224468888887654443 332 256788999999999999988
Q ss_pred HhccCCCc------------cc----hhHHHHHHHHHHHHcCCChHhHHHHHHhhcCCCCHH
Q 002115 353 LAFFGRSM------------EE----CEKLENMGRQIVRKCKGLPLAAKTIASLLQSRNTEK 398 (965)
Q Consensus 353 ~~~~~~~~------------~~----~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~ 398 (965)
+.-..... .. ......-....++..||=-.=+..+++.++...+++
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 86443110 00 012233355678889999999999999998876653
No 235
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.50 E-value=0.0041 Score=61.18 Aligned_cols=36 Identities=31% Similarity=0.595 Sum_probs=28.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEE
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWV 241 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 241 (965)
...+|.++|+.|+||||+|+.++.. ....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEE
Confidence 4569999999999999999999976 44555555665
No 236
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.50 E-value=0.029 Score=58.15 Aligned_cols=172 Identities=18% Similarity=0.240 Sum_probs=98.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc-ccccccccceEEEEcCCCCCHH-HHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN-DGVKRNFEKRIWVCVSEPFDEF-RIARA 255 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~vs~~~~~~-~~~~~ 255 (965)
..++|-.++..++-.++....- .+...-|.|+|+.|.|||+|...+..+ .++..+ .+-|........+ -.++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHHH
Confidence 3578999999999888754321 112236789999999999999888876 122333 3445555444332 24666
Q ss_pred HHHHhcCC----CCCCCCHHHHHHHHHHHhC------CceEEEEEeCCCcchhhchHh-HHhhhc----CCCCCcEEEEe
Q 002115 256 IIESLTGS----ASNFGEFQSLMQHIQECVE------GKKFLLVLDDLWNEVYYKWEP-FYKCLK----NGLHESKILIT 320 (965)
Q Consensus 256 i~~~l~~~----~~~~~~~~~l~~~l~~~l~------~kr~LlVlDdv~~~~~~~~~~-l~~~l~----~~~~gs~ilvT 320 (965)
|.+|+... .....+..+....+-..|+ +-+.++|+|.++-.....-.. +...|. ...|=+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 76666432 1112222232333333332 346788888775421111111 112221 23466778899
Q ss_pred ecchH-------HHhhcCCcceEeCCCCChHHHHHHHHHHh
Q 002115 321 TRKEI-------VARCMRSTNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 321 tR~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
||-.. |-.......++-+..++-++...++++..
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 99643 22223333466677888888888888765
No 237
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.49 E-value=0.0017 Score=61.14 Aligned_cols=90 Identities=28% Similarity=0.258 Sum_probs=50.7
Q ss_pred EEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEE
Q 002115 208 ISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFL 287 (965)
Q Consensus 208 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~L 287 (965)
|.++|.+|+|||+||+.++.. ... ...-+.++...+..++....--. .... .. ....+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~~-~~-~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIGSYDPS-NGQF-EF-KDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHCEEET--TTTT-CE-EE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEeccccccccceeeeeec-cccc-cc-ccccccccc-----cceeE
Confidence 679999999999999999875 211 23346777777777665433211 0000 00 000000001 17899
Q ss_pred EEEeCCCcchhhchHhHHhhhcC
Q 002115 288 LVLDDLWNEVYYKWEPFYKCLKN 310 (965)
Q Consensus 288 lVlDdv~~~~~~~~~~l~~~l~~ 310 (965)
+|||++.......+..+...+..
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~~ 91 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLEE 91 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHSS
T ss_pred EEECCcccCCHHHHHHHHHHHhh
Confidence 99999976555555556555543
No 238
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.47 E-value=0.017 Score=59.94 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=37.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcccccccc----ccceEEEEcCCCCCHHHHHH
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRN----FEKRIWVCVSEPFDEFRIAR 254 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~ 254 (965)
.-.++.|+|.+|+|||++|.+++-....... -..++|++....++..++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 4579999999999999999988744222221 35788999888777655433
No 239
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.45 E-value=0.024 Score=69.10 Aligned_cols=179 Identities=16% Similarity=0.109 Sum_probs=92.7
Q ss_pred CccccchHHHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHH
Q 002115 178 SEIFGREEEKNELVNRLLCESS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEF 250 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (965)
+++.|.+..+++|.+++...-. -+-...+-|.++|.+|+||||||+.+++. ....| +.++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~------ 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGP------ 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecH------
Confidence 3578999999998887642210 01123457889999999999999999986 33222 222211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcch-----------hhchHhHHhhhcCC-CCCcEEE
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEV-----------YYKWEPFYKCLKNG-LHESKIL 318 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~-~~gs~il 318 (965)
. +..... ......+...+.......+.+|++|++.... ......+...+... ..+..++
T Consensus 247 ~----i~~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 247 E----IMSKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred H----Hhcccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 1 111100 0111223333333344567899999984311 01122333333322 2233444
Q ss_pred E-eecch-HHHhhcC----CcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCCh
Q 002115 319 I-TTRKE-IVARCMR----STNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLP 381 (965)
Q Consensus 319 v-TtR~~-~v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 381 (965)
| ||... .+...+. -...+.+...+.++-.++++...-... ..... ....+++.+.|.-
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~-l~~d~----~l~~la~~t~G~~ 381 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP-LAEDV----DLDKLAEVTHGFV 381 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC-Ccccc----CHHHHHHhCCCCC
Confidence 4 44332 2222111 134677888888888888875542111 11111 1455777777754
No 240
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.45 E-value=0.0094 Score=67.83 Aligned_cols=87 Identities=20% Similarity=0.240 Sum_probs=62.4
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECV- 281 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l- 281 (965)
+.-+++.++|++|+||||||+-++++... .++=|++|+..+...+-..|...+.... .+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGY-----sVvEINASDeRt~~~v~~kI~~avq~~s---------------~l~ 383 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGY-----SVVEINASDERTAPMVKEKIENAVQNHS---------------VLD 383 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCc-----eEEEecccccccHHHHHHHHHHHHhhcc---------------ccc
Confidence 45689999999999999999999987433 3677889998888887777765543322 12
Q ss_pred -CCceEEEEEeCCCcchhhchHhHHhhhc
Q 002115 282 -EGKKFLLVLDDLWNEVYYKWEPFYKCLK 309 (965)
Q Consensus 282 -~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 309 (965)
.+++..||+|.++-......+.+...+.
T Consensus 384 adsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred cCCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 2678899999997654334445554443
No 241
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.44 E-value=0.013 Score=60.35 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=35.6
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHH
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRI 252 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 252 (965)
..-.++.|+|.+|+|||++|.+++.. ....-..++||+.. .++...+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 34579999999999999999988865 22334568899887 5665554
No 242
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.38 E-value=0.041 Score=59.52 Aligned_cols=113 Identities=11% Similarity=0.033 Sum_probs=56.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCH--HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDE--FRIARAIIESLTGSASNFGEFQSLMQHIQECV 281 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l 281 (965)
+.++|+++|.+|+||||++..++... ...=..+..++... +.. .+-++...+.++.+.....+...+.+.+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L--~~~GkkVglI~aDt-~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDH-SRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH--HHcCCcEEEEecCC-cchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 45799999999999999999998652 22111344554432 222 22233333333322211234455555554432
Q ss_pred CC-ceEEEEEeCCCcch--hhchHhHHhhhcCCCCCcEEEE
Q 002115 282 EG-KKFLLVLDDLWNEV--YYKWEPFYKCLKNGLHESKILI 319 (965)
Q Consensus 282 ~~-kr~LlVlDdv~~~~--~~~~~~l~~~l~~~~~gs~ilv 319 (965)
.. +.=+|++|-.-... ......+...+....+...++|
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLV 357 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 357 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEE
Confidence 21 23467788764421 2234445444433333333444
No 243
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.064 Score=61.10 Aligned_cols=154 Identities=19% Similarity=0.039 Sum_probs=82.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCC--CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPF--DEFRIARAIIESLTGSASNFGEFQSLMQHIQECV 281 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l 281 (965)
...-|.|.|..|+|||+||+++++... +++.-.+.+|+++.-. ..+.+++. +...+...+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~-----------------l~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF-----------------LNNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH-----------------HHHHHHHHH
Confidence 445789999999999999999998744 4444455566665421 12222222 222334455
Q ss_pred CCceEEEEEeCCCc------chhhchHh----HHhhh----c-CCCCCcE--EEEeecchH-HHhhcCC----cceEeCC
Q 002115 282 EGKKFLLVLDDLWN------EVYYKWEP----FYKCL----K-NGLHESK--ILITTRKEI-VARCMRS----TNVIYVN 339 (965)
Q Consensus 282 ~~kr~LlVlDdv~~------~~~~~~~~----l~~~l----~-~~~~gs~--ilvTtR~~~-v~~~~~~----~~~~~l~ 339 (965)
.-.+-+|||||+.- .+..+|.. +...+ . ....+.+ +|-|..... +...+.. ..+..+.
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 67788999999842 11122222 11112 1 1234445 333433322 1111111 3466788
Q ss_pred CCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCC
Q 002115 340 VLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKG 379 (965)
Q Consensus 340 ~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G 379 (965)
.+..++-.++++...-..... ...+...-++.+|+|
T Consensus 572 ap~~~~R~~IL~~~~s~~~~~----~~~~dLd~ls~~TEG 607 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNLSD----ITMDDLDFLSVKTEG 607 (952)
T ss_pred CcchhHHHHHHHHHHHhhhhh----hhhHHHHHHHHhcCC
Confidence 888888888777654222111 111222337778877
No 244
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.36 E-value=0.03 Score=55.68 Aligned_cols=156 Identities=18% Similarity=0.188 Sum_probs=85.2
Q ss_pred CccccchHHHH---HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHH
Q 002115 178 SEIFGREEEKN---ELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIAR 254 (965)
Q Consensus 178 ~~~vGr~~~~~---~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 254 (965)
++++|.++.+. -|++.|..++.-++=.++-|..+|++|.|||.+|+++.+..++ .| +-|.. ..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~---l~vka---------t~ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL---LLVKA---------TE 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce---EEech---------HH
Confidence 46899887654 4566665544333445788999999999999999999998432 22 12211 11
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHH-HhCCceEEEEEeCCCcch------------hhchHhHHhhhcC--CCCCcEEEE
Q 002115 255 AIIESLTGSASNFGEFQSLMQHIQE-CVEGKKFLLVLDDLWNEV------------YYKWEPFYKCLKN--GLHESKILI 319 (965)
Q Consensus 255 ~i~~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~------------~~~~~~l~~~l~~--~~~gs~ilv 319 (965)
-|-+.++ +....++.+.+ .-+.-++++.+|.++.-. .+....+..-+.. .+.|...|-
T Consensus 187 liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 187 LIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred HHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 2222221 11122222222 224568999999874311 1112223333322 234555555
Q ss_pred eecchHHHh-hcCC--cceEeCCCCChHHHHHHHHHHh
Q 002115 320 TTRKEIVAR-CMRS--TNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 320 TtR~~~v~~-~~~~--~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
.|....... ++.. ..-++..--+++|-.+++...+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 555443322 1111 3456666667888888887776
No 245
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.35 E-value=0.016 Score=67.21 Aligned_cols=45 Identities=31% Similarity=0.460 Sum_probs=36.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|.+..++.+...+... ...-|.|+|.+|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999998876432 2335679999999999999999864
No 246
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.35 E-value=0.0026 Score=58.10 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.5
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
||.|+|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 247
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.33 E-value=0.061 Score=58.10 Aligned_cols=71 Identities=10% Similarity=0.046 Sum_probs=47.7
Q ss_pred CceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchH-HHhh-cCCcceEeCCCCChHHHHHHHHHH
Q 002115 283 GKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEI-VARC-MRSTNVIYVNVLSEIECWSVFEQL 353 (965)
Q Consensus 283 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~ 353 (965)
+++-++|+|++..-+...-..+...+.....+..+|++|.+.. +... ......+.+.+++.++..+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 4445566788877666666667776665445566777776643 3332 233678999999999998888654
No 248
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.28 E-value=0.0031 Score=70.94 Aligned_cols=50 Identities=26% Similarity=0.323 Sum_probs=41.2
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 179 EIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+++|.++.+++|++.|...........+++.++|++|+||||||+.+.+-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 58999999999999995433222345679999999999999999999875
No 249
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.27 E-value=0.019 Score=55.57 Aligned_cols=40 Identities=33% Similarity=0.318 Sum_probs=29.5
Q ss_pred EEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCC
Q 002115 207 IISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFD 248 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 248 (965)
++.|+|.+|+||||++..+.... ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 46899999999999999998762 22334677887765543
No 250
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.26 E-value=0.0041 Score=59.53 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=39.5
Q ss_pred CCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCcccc-CCCCccEeecCCCccccccc--ccCCCccccccc
Q 002115 622 HLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIG-KLRKLMYLENDGTYSLRYLP--VGIGELIRLRIV 698 (965)
Q Consensus 622 ~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~-~L~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L 698 (965)
+.-.+||++|. +..++. +..++.|.+|.|++|. +..+-..+. .+++|..|.+.+| .+..+- ..+..+++|+.|
T Consensus 43 ~~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccc-hhhccc-CCCccccceEEecCCc-ceeeccchhhhccccceEEecCc-chhhhhhcchhccCCcccee
Confidence 44556666665 555544 5556666666666665 444433433 3455666666655 222221 123344445555
Q ss_pred CceEecC
Q 002115 699 KEFVVGG 705 (965)
Q Consensus 699 ~l~~~~~ 705 (965)
.+..+..
T Consensus 119 tll~Npv 125 (233)
T KOG1644|consen 119 TLLGNPV 125 (233)
T ss_pred eecCCch
Confidence 4444443
No 251
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.19 E-value=0.028 Score=57.90 Aligned_cols=88 Identities=17% Similarity=0.143 Sum_probs=52.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccc------cceEEEEcCCCCCHHHHHHHHHHHhcCCC---------CCCC
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNF------EKRIWVCVSEPFDEFRIARAIIESLTGSA---------SNFG 268 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------~~~~ 268 (965)
.-.++.|+|.+|+|||+||.+++... ...- ..++|++....++...+.+ +.+...... ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeCC
Confidence 45699999999999999999887542 1222 4678999887777655543 333322110 0112
Q ss_pred CHHHHHHHHHHHhC----CceEEEEEeCCC
Q 002115 269 EFQSLMQHIQECVE----GKKFLLVLDDLW 294 (965)
Q Consensus 269 ~~~~l~~~l~~~l~----~kr~LlVlDdv~ 294 (965)
+.+++...+.+... .+.-+||+|.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 34444444444332 344478888874
No 252
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.18 E-value=0.02 Score=59.71 Aligned_cols=57 Identities=25% Similarity=0.270 Sum_probs=40.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcccccccc----ccceEEEEcCCCCCHHHHHHHHHHHhc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRN----FEKRIWVCVSEPFDEFRIARAIIESLT 261 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~ 261 (965)
.-.+.=|+|.+|+|||.|+-+++-...+... =..++|++-...|+++++. +|++...
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 3459999999999999999877644222211 2358899999999988875 4666543
No 253
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.17 E-value=0.026 Score=53.21 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
||.++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999854
No 254
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.15 E-value=0.025 Score=58.65 Aligned_cols=89 Identities=25% Similarity=0.260 Sum_probs=54.4
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccc-cceEEEEcCCCC-CHHHHHHHHHHHhcCC-------CCCCCCHHH---
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNF-EKRIWVCVSEPF-DEFRIARAIIESLTGS-------ASNFGEFQS--- 272 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 272 (965)
-..++|+|..|+|||||++.+++. ++.+| +.++++-+.+.. .+.++.+.+.+.-... ..+.....+
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 347899999999999999999987 54455 445566676654 3345555554321111 111111111
Q ss_pred --HHHHHHHHh--C-CceEEEEEeCCCc
Q 002115 273 --LMQHIQECV--E-GKKFLLVLDDLWN 295 (965)
Q Consensus 273 --l~~~l~~~l--~-~kr~LlVlDdv~~ 295 (965)
..-.+.+++ + ++..|+++||+-.
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 122244455 3 8999999999843
No 255
>PRK06696 uridine kinase; Validated
Probab=96.15 E-value=0.0069 Score=62.08 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=36.2
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 182 GREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 182 Gr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.|++-+++|.+.+.... .+...+|+|.|.+|+||||+|+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 46777888888887542 236789999999999999999999875
No 256
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.14 E-value=0.012 Score=57.11 Aligned_cols=80 Identities=18% Similarity=0.295 Sum_probs=44.0
Q ss_pred EEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCC---CHHHHHHHHHHHhCC
Q 002115 207 IISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFG---EFQSLMQHIQECVEG 283 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~---~~~~l~~~l~~~l~~ 283 (965)
++.|.|.+|+||||+|..+... ... ..+++.-...++. +..+.|............ ....+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~~---~~~~iat~~~~~~-e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SGL---QVLYIATAQPFDD-EMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cCC---CcEeCcCCCCChH-HHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 6899999999999999998764 111 2344444444433 444555443332222221 112244444443333
Q ss_pred ceEEEEEeCC
Q 002115 284 KKFLLVLDDL 293 (965)
Q Consensus 284 kr~LlVlDdv 293 (965)
.. ++++|.+
T Consensus 77 ~~-~VlID~L 85 (170)
T PRK05800 77 GR-CVLVDCL 85 (170)
T ss_pred CC-EEEehhH
Confidence 22 7889986
No 257
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.13 Score=57.78 Aligned_cols=158 Identities=16% Similarity=0.219 Sum_probs=88.9
Q ss_pred CccccchHHHHHHHHHHhcCCCC------CCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSK------EQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFR 251 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 251 (965)
.++=|.+....++.+++..-..+ +-..++=|.++|++|.|||.||+++.++ ..-.| +.++.
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vPf-----~~isA------ 256 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVPF-----LSISA------ 256 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCce-----Eeecc------
Confidence 45678888777777766432110 2235677889999999999999999988 33333 33332
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcch-----------hhchHhHHhhhcC----CCCCcE
Q 002115 252 IARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEV-----------YYKWEPFYKCLKN----GLHESK 316 (965)
Q Consensus 252 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~----~~~gs~ 316 (965)
-+|+..+.+ ...+.+.+.+.+....-++++++|+++.-. ..-..++...+.. ...|-.
T Consensus 257 --peivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 257 --PEIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred --hhhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 223333322 223444444555556789999999995421 1112233333322 112333
Q ss_pred EEE---eecchHHHhhc---C-CcceEeCCCCChHHHHHHHHHHhc
Q 002115 317 ILI---TTRKEIVARCM---R-STNVIYVNVLSEIECWSVFEQLAF 355 (965)
Q Consensus 317 ilv---TtR~~~v~~~~---~-~~~~~~l~~L~~~~~~~lf~~~~~ 355 (965)
||| |+|...+-..+ + -.+-+.+.--++..-.++++..+-
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICR 375 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHh
Confidence 443 55654443322 1 145666776666666667766553
No 258
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.09 E-value=0.0065 Score=60.68 Aligned_cols=107 Identities=19% Similarity=0.159 Sum_probs=53.3
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-h---
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQEC-V--- 281 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-l--- 281 (965)
+++.|.|.+|.||||+++.+... .... ...+.+...... ....+.+..+.. ...+.......... .
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~----Aa~~L~~~~~~~---a~Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNK----AAKELREKTGIE---AQTIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHH----HHHHHHHHHTS----EEEHHHHTTEECCEECCSS
T ss_pred eEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHH----HHHHHHHhhCcc---hhhHHHHHhcCCccccccc
Confidence 48889999999999999998765 2222 123333333222 222233332211 11111110000000 0
Q ss_pred --CCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecch
Q 002115 282 --EGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKE 324 (965)
Q Consensus 282 --~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 324 (965)
..++-+||+|+++-.+...+..+...... .|+|+|+.--..
T Consensus 89 ~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp CC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred ccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 12345999999987666666666666555 467888766443
No 259
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.05 E-value=0.02 Score=60.03 Aligned_cols=135 Identities=25% Similarity=0.243 Sum_probs=73.8
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccc-cccccccceE----EEEcCCCC-----CH
Q 002115 180 IFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNND-GVKRNFEKRI----WVCVSEPF-----DE 249 (965)
Q Consensus 180 ~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~----wv~vs~~~-----~~ 249 (965)
+-+|..+..--++.|+.+ ....|.+.|.+|.|||-||-++.-.. ..++.|..++ -|.+++.. +.
T Consensus 226 i~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 345777777778888754 67799999999999999995544321 1233443322 12233221 11
Q ss_pred HH----HHHHHH---HHhcCCCCCCCCHHHHHHHHH---------HHhCCc---eEEEEEeCCCcchhhchHhHHhhhcC
Q 002115 250 FR----IARAII---ESLTGSASNFGEFQSLMQHIQ---------ECVEGK---KFLLVLDDLWNEVYYKWEPFYKCLKN 310 (965)
Q Consensus 250 ~~----~~~~i~---~~l~~~~~~~~~~~~l~~~l~---------~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~ 310 (965)
++ .++.|. +.+....... ...+...+. .+.+|+ +-+||+|...+-.. .+++..+..
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~~~--~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp---heikTiltR 374 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNEPG--DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP---HELKTILTR 374 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccccc--hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH---HHHHHHHHh
Confidence 11 122221 1121111111 112222211 133444 45899999988644 345556667
Q ss_pred CCCCcEEEEeecchH
Q 002115 311 GLHESKILITTRKEI 325 (965)
Q Consensus 311 ~~~gs~ilvTtR~~~ 325 (965)
.+.||||+.|--..+
T Consensus 375 ~G~GsKIVl~gd~aQ 389 (436)
T COG1875 375 AGEGSKIVLTGDPAQ 389 (436)
T ss_pred ccCCCEEEEcCCHHH
Confidence 789999999986443
No 260
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.038 Score=66.09 Aligned_cols=120 Identities=16% Similarity=0.221 Sum_probs=76.5
Q ss_pred ccccchHHHHHHHHHHhcCCCCCC--CCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHH
Q 002115 179 EIFGREEEKNELVNRLLCESSKEQ--KGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAI 256 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 256 (965)
.++|.++.+..|.+.+........ .+...+.+.|+.|+|||-||+++..- +-+..+..+-|+.|+ ... +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse------~~e-v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSE------FQE-V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhh------hhh-h
Confidence 578999999999998876653222 25678899999999999999999865 444444555554443 222 2
Q ss_pred HHHhcCCC--CCCCCHHHHHHHHHHHhCCceE-EEEEeCCCcchhhchHhHHhhhcCC
Q 002115 257 IESLTGSA--SNFGEFQSLMQHIQECVEGKKF-LLVLDDLWNEVYYKWEPFYKCLKNG 311 (965)
Q Consensus 257 ~~~l~~~~--~~~~~~~~l~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~ 311 (965)
.+.++.+. .+....+ .|.+.++.++| +|+||||...+......+...+..|
T Consensus 634 skligsp~gyvG~e~gg----~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 634 SKLIGSPPGYVGKEEGG----QLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhccCCCcccccchhHH----HHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 22222221 1222233 45556666666 6779999876666666566666554
No 261
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.01 E-value=0.063 Score=52.92 Aligned_cols=118 Identities=15% Similarity=0.121 Sum_probs=64.2
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEE---cCCCCCHHHHHH------HHHHHhcCCC-----CC-CCCH
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVC---VSEPFDEFRIAR------AIIESLTGSA-----SN-FGEF 270 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~~------~i~~~l~~~~-----~~-~~~~ 270 (965)
.+++|+|..|.|||||++.++... ......+++. +.. .+...... ++++.++... .. .+.-
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 499999999999999999998752 2344555443 221 12222211 1344443211 11 1122
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCc-chhhchHhHHhhhcCC-CC-CcEEEEeecchHHH
Q 002115 271 QSLMQHIQECVEGKKFLLVLDDLWN-EVYYKWEPFYKCLKNG-LH-ESKILITTRKEIVA 327 (965)
Q Consensus 271 ~~l~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~ilvTtR~~~v~ 327 (965)
+...-.+.+.+...+-++++|+.-. -+....+.+...+..- .. |..||++|......
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2233335555667788999998743 2223334444444332 12 56788888776544
No 262
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.00 E-value=0.12 Score=48.23 Aligned_cols=85 Identities=12% Similarity=0.164 Sum_probs=68.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhccc-CcHHHHHHHHHHHHhhhchhh
Q 002115 1 MVVDAIISPLLQQLTAMAAAETKEQVKLVTGVGKEVKKLNSNLRAIQAVLHDAEKRQV-KEETVRLWLDQLRDACYDIED 79 (965)
Q Consensus 1 ~Ma~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~-~~~~~~~wl~~l~~~~yd~ed 79 (965)
|.|+.+.+|+++.+++.+...+.+..+.....+.-+++|...+..|.-++++.+.... -+..-+.-++++.+...++++
T Consensus 1 ~~~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~ 80 (147)
T PF05659_consen 1 PIAELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKE 80 (147)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHH
Confidence 4577778888888888888888887777888899999999999999999999887532 233336778899999999999
Q ss_pred HHHHHH
Q 002115 80 VLGEWN 85 (965)
Q Consensus 80 ~ld~~~ 85 (965)
+++.|.
T Consensus 81 LV~k~s 86 (147)
T PF05659_consen 81 LVEKCS 86 (147)
T ss_pred HHHHhc
Confidence 998773
No 263
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.98 E-value=0.019 Score=58.67 Aligned_cols=43 Identities=16% Similarity=0.097 Sum_probs=31.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCC
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFD 248 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 248 (965)
.-.++.|.|.+|+||||+|.+++.. ....=..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 4579999999999999999998865 222223567887765554
No 264
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.96 E-value=0.012 Score=62.79 Aligned_cols=85 Identities=21% Similarity=0.181 Sum_probs=55.1
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCC-----CCCCCCHHHHHHHH
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGS-----ASNFGEFQSLMQHI 277 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~l~~~l 277 (965)
+.-+++-|+|++|+||||||.+++-. ....-..++||+..+.+++. .+++++.. .....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 35679999999999999999987755 22334567899887777654 23333321 01122445555555
Q ss_pred HHHhC-CceEEEEEeCCC
Q 002115 278 QECVE-GKKFLLVLDDLW 294 (965)
Q Consensus 278 ~~~l~-~kr~LlVlDdv~ 294 (965)
...++ +.--+||+|.|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55554 455689999874
No 265
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.96 E-value=0.054 Score=61.65 Aligned_cols=159 Identities=18% Similarity=0.167 Sum_probs=82.5
Q ss_pred CccccchHHHHHHHHHHhc---C-CCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLC---E-SSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIA 253 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~---~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 253 (965)
+++.|.+..++.+.+.... . ...+-..++-|.++|++|.|||.+|+.+.+. ....| +-+..+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~-------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK-------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH--------
Confidence 3567877666655543211 0 0001234567899999999999999999986 32222 1222211
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchh-------h-----chHhHHhhhcCCCCCcEEEEee
Q 002115 254 RAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVY-------Y-----KWEPFYKCLKNGLHESKILITT 321 (965)
Q Consensus 254 ~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-------~-----~~~~l~~~l~~~~~gs~ilvTt 321 (965)
+.....+ .....+.+.+...-...+++|++|+++.-.. . ....+...+.....+.-||.||
T Consensus 295 --l~~~~vG-----ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 295 --LFGGIVG-----ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred --hcccccC-----hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 1100000 1111222222222235789999999853100 0 0112223333333344566677
Q ss_pred cchH-HHhhc----CCcceEeCCCCChHHHHHHHHHHhcc
Q 002115 322 RKEI-VARCM----RSTNVIYVNVLSEIECWSVFEQLAFF 356 (965)
Q Consensus 322 R~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~ 356 (965)
.... +-..+ .-...+.++.-+.++-.++|+.+...
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 5432 22221 12457888888889999999877643
No 266
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.95 E-value=0.11 Score=63.57 Aligned_cols=179 Identities=18% Similarity=0.185 Sum_probs=92.7
Q ss_pred CccccchHHHHHHHHHHhcCCCC-------CCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSK-------EQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEF 250 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (965)
.++.|.+..++.+.+.+.-+-.. +-...+-+.++|++|.|||++|+.+.+. ....| +.++. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 45778888877777665321100 1123456889999999999999999987 33333 22221 1
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcch--------h----hchHhHHhhhcC--CCCCcE
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEV--------Y----YKWEPFYKCLKN--GLHESK 316 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~--------~----~~~~~l~~~l~~--~~~gs~ 316 (965)
+++....+ .....+...+...-...+.+|++|++..-. . .....+...+.. ...+.-
T Consensus 522 ----~l~~~~vG-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 ----EILSKWVG-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred ----HHhhcccC-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 11111111 111122222333334667999999985310 0 011223333332 123445
Q ss_pred EEEeecchHHH-hhc----CCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCCh
Q 002115 317 ILITTRKEIVA-RCM----RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLP 381 (965)
Q Consensus 317 ilvTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 381 (965)
||.||...... ..+ .-...+.+...+.++-.++|+.+.-+. ......+ ...+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~-~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM-PLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC-CCCccCC----HHHHHHHcCCCC
Confidence 56666443322 221 124577888888888888887654221 1111122 344666776643
No 267
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.92 E-value=0.036 Score=55.59 Aligned_cols=88 Identities=20% Similarity=0.293 Sum_probs=52.6
Q ss_pred CCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEE---------cCCCCCHHHH--HHHHHHHhcCCCCCC---
Q 002115 202 QKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVC---------VSEPFDEFRI--ARAIIESLTGSASNF--- 267 (965)
Q Consensus 202 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---------vs~~~~~~~~--~~~i~~~l~~~~~~~--- 267 (965)
..++.+|.++||+|.||||..|.++.+ ....+..-.-|+ ..-+.|+++. .++..++......+.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~h--l~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSH--LHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHH--HhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 345678899999999999999999987 434343222222 2334566665 567777765433221
Q ss_pred ------CCHHHHHHHHHHHhCCceEEEEEeC
Q 002115 268 ------GEFQSLMQHIQECVEGKKFLLVLDD 292 (965)
Q Consensus 268 ------~~~~~l~~~l~~~l~~kr~LlVlDd 292 (965)
..+++....+.+.-..-.|.| +|-
T Consensus 94 sLNLF~tk~dqv~~~iek~~~~~~~~l-iDT 123 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKRAEEFDYVL-IDT 123 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCEEE-EcC
Confidence 234555666655544444443 343
No 268
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.91 E-value=0.03 Score=60.07 Aligned_cols=57 Identities=21% Similarity=0.177 Sum_probs=41.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcccccc----ccccceEEEEcCCCCCHHHHHHHHHHHhc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVK----RNFEKRIWVCVSEPFDEFRIARAIIESLT 261 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 261 (965)
.-+++-|+|.+|+|||+|+.+++-..... +.=..++||+....|+++++.+ +++.++
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 55799999999999999998766332121 1113678999999898888754 456554
No 269
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.90 E-value=0.058 Score=50.82 Aligned_cols=104 Identities=17% Similarity=0.122 Sum_probs=56.0
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCce
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKK 285 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 285 (965)
.+++|+|..|.|||||++.+..-.. .....+|+.-.. .+.-. ...+..+...-.+.+.+..++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcCC
Confidence 4899999999999999999987521 223334332100 00000 001111222223445555677
Q ss_pred EEEEEeCCCc-chhhchHhHHhhhcCCCCCcEEEEeecchHHHh
Q 002115 286 FLLVLDDLWN-EVYYKWEPFYKCLKNGLHESKILITTRKEIVAR 328 (965)
Q Consensus 286 ~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 328 (965)
-++++|+.-. -+......+...+... +..||++|.......
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 7899998743 2233344454444433 246777777655443
No 270
>PRK13695 putative NTPase; Provisional
Probab=95.89 E-value=0.0095 Score=58.42 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998876
No 271
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.89 E-value=0.053 Score=52.91 Aligned_cols=116 Identities=14% Similarity=0.104 Sum_probs=59.4
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCC--CCCHHHHHHHHHHHhc--CCCCC----------CCCHH
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSE--PFDEFRIARAIIESLT--GSASN----------FGEFQ 271 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~--~~~~~----------~~~~~ 271 (965)
.+++|+|..|.|||||.+.++.-. ......+++.-.. ....... .+.++ .+... .+.-+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHHH
Confidence 489999999999999999998752 2233444332110 0011111 11111 00000 00111
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCcc-hhhchHhHHhhhcCCCCCcEEEEeecchHHHh
Q 002115 272 SLMQHIQECVEGKKFLLVLDDLWNE-VYYKWEPFYKCLKNGLHESKILITTRKEIVAR 328 (965)
Q Consensus 272 ~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 328 (965)
...-.+...+..++=++++|+-... +....+.+...+.....+..||++|.......
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 1222345555667789999987542 22223334444433223567888888766554
No 272
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.86 E-value=0.033 Score=52.70 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=62.2
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEE---EEcCCCCCHHHHHHHHHHHhc-----CCC-CCCCCH------
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIW---VCVSEPFDEFRIARAIIESLT-----GSA-SNFGEF------ 270 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w---v~vs~~~~~~~~~~~i~~~l~-----~~~-~~~~~~------ 270 (965)
..|-|++..|.||||+|-...-.. ....+ .+.+ +.-........+++.+ ..+. ... ....+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra-~~~g~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA-LGHGY-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-HHCCC-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 378888889999999996655431 11112 2223 2222233444444333 0110 000 000111
Q ss_pred -HHHHHHHHHHhCC-ceEEEEEeCCCcc---hhhchHhHHhhhcCCCCCcEEEEeecchH
Q 002115 271 -QSLMQHIQECVEG-KKFLLVLDDLWNE---VYYKWEPFYKCLKNGLHESKILITTRKEI 325 (965)
Q Consensus 271 -~~l~~~l~~~l~~-kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 325 (965)
....+..++.+.. +-=|||||++-.. .....+.+...+.....+..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1122233444444 4449999998431 23456677787777777889999999853
No 273
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.85 E-value=0.037 Score=53.47 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=44.9
Q ss_pred EEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCC---CCHHHHHHHHHHHhCCc
Q 002115 208 ISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNF---GEFQSLMQHIQECVEGK 284 (965)
Q Consensus 208 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~l~~~l~~~l~~k 284 (965)
+.|.|..|+|||++|.++... ....++++.-.+.++.+ +.+.|.+......... .....+.+.+.+. . +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 678999999999999998753 22356777777777653 4444433222222111 1222333333221 2 2
Q ss_pred eEEEEEeCC
Q 002115 285 KFLLVLDDL 293 (965)
Q Consensus 285 r~LlVlDdv 293 (965)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337999987
No 274
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.83 E-value=0.0082 Score=58.20 Aligned_cols=92 Identities=18% Similarity=0.147 Sum_probs=52.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcccccc-ccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVK-RNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVE 282 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 282 (965)
+..++.+.|+.|+|||.||+.+..- +. +.....+-+++++-....+.-..+ ..+.+.... ....
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~~~~~~~~~~~~-~~l~~~~~~--~v~~---------- 66 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSEYSEGDDVESSV-SKLLGSPPG--YVGA---------- 66 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGGHCSHHHCSCHC-HHHHHHTTC--HHHH----------
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhcccccchHHhhh-hhhhhcccc--eeec----------
Confidence 3568999999999999999999876 33 344566666766543311111111 111110000 0000
Q ss_pred CceEEEEEeCCCcchh-----------hchHhHHhhhcC
Q 002115 283 GKKFLLVLDDLWNEVY-----------YKWEPFYKCLKN 310 (965)
Q Consensus 283 ~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~ 310 (965)
...-+|+||++..... ..|..+...+..
T Consensus 67 ~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~ 105 (171)
T PF07724_consen 67 EEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEG 105 (171)
T ss_dssp HHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcc
Confidence 0111999999987666 667777777654
No 275
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.82 E-value=0.074 Score=52.31 Aligned_cols=117 Identities=14% Similarity=0.079 Sum_probs=59.8
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhc--CCC------------C-CCCCH
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLT--GSA------------S-NFGEF 270 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~--~~~------------~-~~~~~ 270 (965)
.+++|+|..|.|||||++.+..-.. .....+++.-. +.......+-+.++ .+. . ..+.-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 4899999999999999999987521 12233333211 11111011111111 000 0 01111
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCcc-hhhchHhHHhhhcCCCCCcEEEEeecchHHHh
Q 002115 271 QSLMQHIQECVEGKKFLLVLDDLWNE-VYYKWEPFYKCLKNGLHESKILITTRKEIVAR 328 (965)
Q Consensus 271 ~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 328 (965)
+...-.+.+.+..++=++++|+.... +....+.+...+.....+..||++|.+.....
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 22223345556677788999987542 22223334444433234677888888776554
No 276
>PTZ00494 tuzin-like protein; Provisional
Probab=95.79 E-value=1.4 Score=48.18 Aligned_cols=170 Identities=15% Similarity=0.121 Sum_probs=107.7
Q ss_pred CCCCCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHH
Q 002115 173 SSIDESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRI 252 (965)
Q Consensus 173 ~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 252 (965)
.+.....+|.|+++-..+.+.|...+ ..+++++.+.|.-|.||++|.+.+...+.+ ..++|.|... ++-
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDt 434 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDT 434 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cch
Confidence 33456679999999888888887654 358899999999999999999999876443 4667877543 456
Q ss_pred HHHHHHHhcCCCCCC--CCHHHHHHH---HHHHhCCceEEEEEeCCCcch-hhchHhHHhhhcCCCCCcEEEEeecchHH
Q 002115 253 ARAIIESLTGSASNF--GEFQSLMQH---IQECVEGKKFLLVLDDLWNEV-YYKWEPFYKCLKNGLHESKILITTRKEIV 326 (965)
Q Consensus 253 ~~~i~~~l~~~~~~~--~~~~~l~~~---l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 326 (965)
++.|.+.++.+..+. +-++-+.+. -.....++.-+||+-==.-.+ ...+.+.. .|.....-++|++---.+.+
T Consensus 435 LrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESL 513 (664)
T PTZ00494 435 LRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKAL 513 (664)
T ss_pred HHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhh
Confidence 788888888765332 222222222 222345666666664221111 11222222 24444556788876544443
Q ss_pred Hhh---cCCcceEeCCCCChHHHHHHHHHHh
Q 002115 327 ARC---MRSTNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 327 ~~~---~~~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
... +.--..|.+..++.++|.++-.+..
T Consensus 514 T~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 514 TPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred chhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 222 1224588899999999998877653
No 277
>PHA02244 ATPase-like protein
Probab=95.78 E-value=0.045 Score=58.84 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-|.|+|..|+|||+||+.++..
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999876
No 278
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.78 E-value=0.053 Score=52.82 Aligned_cols=122 Identities=12% Similarity=0.098 Sum_probs=63.8
Q ss_pred cEEEEEEecCCChHHHHHHHHHccc---ccccc---cc--ceEEEEcCCCCCHHHHHHHHHHHhcCCCC------CCCCH
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNND---GVKRN---FE--KRIWVCVSEPFDEFRIARAIIESLTGSAS------NFGEF 270 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~~---F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~ 270 (965)
-.+++|+|..|+|||||.+.+..+. .+... |. ...|+ .+ .+.++.++.... ..-+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3489999999999999999986431 11111 11 12232 22 345555543211 11111
Q ss_pred -HHHHHHHHHHhCCc--eEEEEEeCCCc-chhhchHhHHhhhcCC-CCCcEEEEeecchHHHhhcCCcceEeC
Q 002115 271 -QSLMQHIQECVEGK--KFLLVLDDLWN-EVYYKWEPFYKCLKNG-LHESKILITTRKEIVARCMRSTNVIYV 338 (965)
Q Consensus 271 -~~l~~~l~~~l~~k--r~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~~~~~~~~~l 338 (965)
....-.+.+.+..+ +=++++|+.-. -+....+.+...+... ..|..||++|.+...... .++++.+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 22222344455556 67888898643 1222333344444331 246778888887766542 3445544
No 279
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.049 Score=59.80 Aligned_cols=54 Identities=33% Similarity=0.359 Sum_probs=39.7
Q ss_pred Cccccch---HHHHHHHHHHhcCCCC---CCCCcEEEEEEecCCChHHHHHHHHHccccc
Q 002115 178 SEIFGRE---EEKNELVNRLLCESSK---EQKGPCIISLVGMGGIGKTTLAQFAYNNDGV 231 (965)
Q Consensus 178 ~~~vGr~---~~~~~i~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 231 (965)
+++-|-| .|+++|+++|.++..- ++.=++=|.++|++|.|||-||++|+....+
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 4566766 4778888888655321 2233567899999999999999999987443
No 280
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.74 E-value=0.037 Score=58.74 Aligned_cols=87 Identities=18% Similarity=0.150 Sum_probs=45.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcccccc-ccccceEEEEcCCCC-CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVK-RNFEKRIWVCVSEPF-DEFRIARAIIESLTGSASNFGEFQSLMQHIQECV 281 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l 281 (965)
..+++.|+|..|+||||++..+......+ +. ..+..|+..... .....+....+.++.......+...+...+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~-~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~- 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGN-KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL- 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCC-CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-
Confidence 46799999999999999999888653222 11 234556543211 122223333333332222223334444444433
Q ss_pred CCceEEEEEeCC
Q 002115 282 EGKKFLLVLDDL 293 (965)
Q Consensus 282 ~~kr~LlVlDdv 293 (965)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 346667753
No 281
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.74 E-value=0.042 Score=62.94 Aligned_cols=59 Identities=25% Similarity=0.291 Sum_probs=43.7
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEE
Q 002115 179 EIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVC 242 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 242 (965)
+++--.+-++++..||..... +....+++.+.|++|+||||.++.++++ -.|+..-|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 455556778888889875432 2334569999999999999999999986 2366666764
No 282
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.72 E-value=0.056 Score=59.37 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...++.++|.+|+||||++.++...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998864
No 283
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.70 E-value=0.034 Score=55.31 Aligned_cols=87 Identities=18% Similarity=0.155 Sum_probs=47.9
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCC-CCCHHHHHHHHHHHhcCCC---CCCCCH-HHHHHHHHH
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSE-PFDEFRIARAIIESLTGSA---SNFGEF-QSLMQHIQE 279 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~---~~~~~~-~~l~~~l~~ 279 (965)
++|+.+||+.|+||||.+.+++.....+ =..+..++... .....+-++..++.++.+. ....+. +.+.+.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4699999999999999998887663322 23455666532 2244455666777766431 111222 223333333
Q ss_pred HhCCceEEEEEeCC
Q 002115 280 CVEGKKFLLVLDDL 293 (965)
Q Consensus 280 ~l~~kr~LlVlDdv 293 (965)
.-.++.=+|++|=.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 32223336777755
No 284
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.70 E-value=0.048 Score=58.94 Aligned_cols=58 Identities=24% Similarity=0.236 Sum_probs=41.9
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHcccccc----ccccceEEEEcCCCCCHHHHHHHHHHHhc
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNNDGVK----RNFEKRIWVCVSEPFDEFRIARAIIESLT 261 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 261 (965)
..-.+.-|+|.+|+|||+|+.+++-..... +.-..++||+....|+++++.+ +++.++
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 355789999999999999998876332221 1124678999999999888655 455554
No 285
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.66 E-value=0.043 Score=53.05 Aligned_cols=115 Identities=17% Similarity=0.126 Sum_probs=61.4
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCC--CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCC
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSE--PFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEG 283 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 283 (965)
.+++|+|..|.|||||.+.+... .......+++.-.. ..+..+..+ +.++-. ...+.-+...-.+.+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHHHHHHHhc
Confidence 48999999999999999999875 22344555543211 111111111 111100 0012222333345555666
Q ss_pred ceEEEEEeCCCc-chhhchHhHHhhhcCC-CCCcEEEEeecchHHH
Q 002115 284 KKFLLVLDDLWN-EVYYKWEPFYKCLKNG-LHESKILITTRKEIVA 327 (965)
Q Consensus 284 kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~ 327 (965)
++-++++|+.-. -+......+...+... ..|..||++|.+....
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 778889998743 2223334444444332 2366788888776533
No 286
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.65 E-value=0.033 Score=59.40 Aligned_cols=85 Identities=20% Similarity=0.191 Sum_probs=55.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHH
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSA-----SNFGEFQSLMQHI 277 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l 277 (965)
+.-+++-|+|.+|+||||||.++... ....-..++|++..+.++.. .+++++... ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 35579999999999999999887765 22333467799887766653 234443221 1123445555555
Q ss_pred HHHhC-CceEEEEEeCCC
Q 002115 278 QECVE-GKKFLLVLDDLW 294 (965)
Q Consensus 278 ~~~l~-~kr~LlVlDdv~ 294 (965)
...++ +..-+||+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55553 456689999984
No 287
>PRK08233 hypothetical protein; Provisional
Probab=95.65 E-value=0.037 Score=54.69 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.8
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 469999999999999999999865
No 288
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.64 E-value=0.081 Score=62.12 Aligned_cols=134 Identities=15% Similarity=0.140 Sum_probs=74.5
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHH
Q 002115 176 DESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARA 255 (965)
Q Consensus 176 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 255 (965)
....++|....++++.+.+..... ...-|.|+|..|+|||++|+.+++... ..-...+.|++..- ....+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~--r~~~pfv~i~c~~~--~~~~~~~ 265 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSP--RAKRPFVKVNCAAL--SETLLES 265 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeecCCC--CHHHHHH
Confidence 345799999999999988765432 233577999999999999999997522 11112344444432 1222222
Q ss_pred HHHHhcCCCCCC-CC-HHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC-----------CCcEEEEeec
Q 002115 256 IIESLTGSASNF-GE-FQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL-----------HESKILITTR 322 (965)
Q Consensus 256 i~~~l~~~~~~~-~~-~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR 322 (965)
.+.+...+. .. .......+ -....-.|+||++..-.......+...+..+. ...+||.||.
T Consensus 266 ---~lfg~~~~~~~~~~~~~~g~~---~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 266 ---ELFGHEKGAFTGAIAQRKGRF---ELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred ---HHcCCCCCccCCCCcCCCCcc---cccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 222211100 00 00000000 01234468899998765556666777665432 1258888875
Q ss_pred c
Q 002115 323 K 323 (965)
Q Consensus 323 ~ 323 (965)
.
T Consensus 340 ~ 340 (534)
T TIGR01817 340 R 340 (534)
T ss_pred C
Confidence 4
No 289
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.13 Score=58.53 Aligned_cols=159 Identities=20% Similarity=0.224 Sum_probs=79.6
Q ss_pred CccccchHHHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHH
Q 002115 178 SEIFGREEEKNELVNRLLCESS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEF 250 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (965)
+++=|.++-+.++-+.+.-+-. -+-..++-|..+|++|.|||++|+.+.+. -+..| +.++.+
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgp---- 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGP---- 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCH----
Confidence 3455566655555544432111 02246778999999999999999999987 33344 332211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcch-----------hhchHhHHhhhcCCCCCcEEEE
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEV-----------YYKWEPFYKCLKNGLHESKILI 319 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~~~gs~ilv 319 (965)
++....-+ .....+.+.+++.-+--..+|.||.++.-. .....++..-+........|+|
T Consensus 503 ----EL~sk~vG-----eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V 573 (693)
T KOG0730|consen 503 ----ELFSKYVG-----ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV 573 (693)
T ss_pred ----HHHHHhcC-----chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE
Confidence 11111111 111122222222223345788888774311 1112223333333223334444
Q ss_pred ---eecchHHHhh-cC---CcceEeCCCCChHHHHHHHHHHhcc
Q 002115 320 ---TTRKEIVARC-MR---STNVIYVNVLSEIECWSVFEQLAFF 356 (965)
Q Consensus 320 ---TtR~~~v~~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~ 356 (965)
|-|...+-.. +. .+..+.++.=+.+...++|+.++-.
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred EeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 3344443332 23 2557777766677777889888743
No 290
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.58 E-value=0.047 Score=54.57 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=45.1
Q ss_pred EEEEEecCCChHHHHHHHHHccccccc-ccc---ceEEEEcCCCCCHHHHHHHHHHHh----cCCCCCCCCHHHHHHHHH
Q 002115 207 IISLVGMGGIGKTTLAQFAYNNDGVKR-NFE---KRIWVCVSEPFDEFRIARAIIESL----TGSASNFGEFQSLMQHIQ 278 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~---~~~wv~vs~~~~~~~~~~~i~~~l----~~~~~~~~~~~~l~~~l~ 278 (965)
||+|.|.+|+||||+|+.+... ... ... ....+....-......... -... .-..+..-+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~--L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI--LNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 7999999999999999999875 322 122 1333333332222222222 1111 112234567788888887
Q ss_pred HHhCCceEEE
Q 002115 279 ECVEGKKFLL 288 (965)
Q Consensus 279 ~~l~~kr~Ll 288 (965)
....++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7766665443
No 291
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.57 E-value=0.024 Score=56.74 Aligned_cols=109 Identities=11% Similarity=0.148 Sum_probs=57.9
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHH---HHHHHhcCCCCCCCCHHHHHHHHHHHhC
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIAR---AIIESLTGSASNFGEFQSLMQHIQECVE 282 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~---~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 282 (965)
.+|.|+|..|.||||++..+... +..+....+++- .++.. .... .++.+- . -..+.....+.++..++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~-e~~~E--~~~~~~~~~i~q~---~-vg~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTI-EDPIE--FVHESKRSLINQR---E-VGLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEE-cCCcc--ccccCccceeeec---c-cCCCccCHHHHHHHHhc
Confidence 37899999999999999987765 333333444432 22111 0000 111110 0 01112234455666666
Q ss_pred CceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchHHHh
Q 002115 283 GKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEIVAR 328 (965)
Q Consensus 283 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 328 (965)
...=.+++|++.+. +.+..+.... ..|..++.|+....+..
T Consensus 73 ~~pd~ii~gEird~--e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 73 QDPDVILVGEMRDL--ETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CCcCEEEEcCCCCH--HHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 66679999999653 2333333322 23556777776655443
No 292
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.57 E-value=0.18 Score=48.24 Aligned_cols=124 Identities=18% Similarity=0.175 Sum_probs=71.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEc---C------------------C-----------------
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCV---S------------------E----------------- 245 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s------------------~----------------- 245 (965)
.-..+.|+|..|.||||+.+.+|..++-. ...+|+.- + |
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 34589999999999999999999864321 23334320 0 0
Q ss_pred ----CCCHHHHHHHH---HHHhcCCC------CCCCCHHHHHHHHHHHhCCceEEEEEeCCCc-ch-hhchHhHHhhhcC
Q 002115 246 ----PFDEFRIARAI---IESLTGSA------SNFGEFQSLMQHIQECVEGKKFLLVLDDLWN-EV-YYKWEPFYKCLKN 310 (965)
Q Consensus 246 ----~~~~~~~~~~i---~~~l~~~~------~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~-~~-~~~~~~l~~~l~~ 310 (965)
.....++-+.+ ++.++... ...+.-++-.-.+.+.+-+++-+++-|.--- -+ .-.|+.+.-.-.-
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 11222232222 22222211 1122233444456666778888999886421 11 2356554443334
Q ss_pred CCCCcEEEEeecchHHHhhc
Q 002115 311 GLHESKILITTRKEIVARCM 330 (965)
Q Consensus 311 ~~~gs~ilvTtR~~~v~~~~ 330 (965)
+..|..||++|.+..+-..+
T Consensus 184 nr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred hhcCcEEEEEeccHHHHHhc
Confidence 56799999999998877655
No 293
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.54 E-value=0.12 Score=50.00 Aligned_cols=116 Identities=10% Similarity=0.017 Sum_probs=59.8
Q ss_pred EEEEEEecCCChHHHHHHHHHccccc-ccc--cc---ceEEEEcCCCCC--HHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGV-KRN--FE---KRIWVCVSEPFD--EFRIARAIIESLTGSASNFGEFQSLMQHI 277 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~---~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~l~~~l 277 (965)
.+++|+|..|.|||||++.+..-... .+. ++ ...++ .+... ...+...+.-. .....+.-+...-.+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 48999999999999999999875221 111 11 12222 22221 11233333210 111122223333345
Q ss_pred HHHhCCceEEEEEeCCCc-chhhchHhHHhhhcCCCCCcEEEEeecchHHHh
Q 002115 278 QECVEGKKFLLVLDDLWN-EVYYKWEPFYKCLKNGLHESKILITTRKEIVAR 328 (965)
Q Consensus 278 ~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 328 (965)
.+.+..++=++++|+--. -+......+...+... +..||++|.+.....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 555566777888998643 1222333344444332 356888887766543
No 294
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.53 E-value=0.053 Score=56.42 Aligned_cols=91 Identities=20% Similarity=0.154 Sum_probs=58.7
Q ss_pred CCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcC----CCCCCCCHHHHHHHH
Q 002115 202 QKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTG----SASNFGEFQSLMQHI 277 (965)
Q Consensus 202 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~----~~~~~~~~~~l~~~l 277 (965)
-+.-+++=|+|+.|.||||+|.+++-. .+..-..++|++....+++..+..--...+.. .........++...+
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 346689999999999999999887765 33444478999999999998754433221221 112222233344444
Q ss_pred HHHhCCceEEEEEeCCC
Q 002115 278 QECVEGKKFLLVLDDLW 294 (965)
Q Consensus 278 ~~~l~~kr~LlVlDdv~ 294 (965)
.+....+--|+|+|.+-
T Consensus 135 ~~~~~~~i~LvVVDSva 151 (279)
T COG0468 135 ARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHhccCCCCEEEEecCc
Confidence 44444446688888884
No 295
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.52 E-value=0.19 Score=50.81 Aligned_cols=210 Identities=13% Similarity=0.116 Sum_probs=117.3
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc----ccccccccceEEEEcCCC---------
Q 002115 180 IFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN----DGVKRNFEKRIWVCVSEP--------- 246 (965)
Q Consensus 180 ~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~----~~~~~~F~~~~wv~vs~~--------- 246 (965)
+.++++....+..... .+...-+.++|+.|.||-|.+-.+.++ ---+-.-+.+.|.+-|..
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 5566666666666543 235678899999999999987555443 111122344555543332
Q ss_pred ------------CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceE-EEEEeCCCcchhhchHhHHhhhcCCCC
Q 002115 247 ------------FDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKF-LLVLDDLWNEVYYKWEPFYKCLKNGLH 313 (965)
Q Consensus 247 ------------~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~ 313 (965)
...+-+.++++++.....+- + .-..+.| ++|+-.++.-..++-..++.-.-.-..
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qi----e--------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQI----E--------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcch----h--------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 11233444555444332110 0 0012344 556666655444455556665555556
Q ss_pred CcEEEEeecc--hHHHhhcCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhh
Q 002115 314 ESKILITTRK--EIVARCMRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLL 391 (965)
Q Consensus 314 gs~ilvTtR~--~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l 391 (965)
.+|+|+...+ +-+...-...-.+++..-+++|....++..+-..+- . .| .+++.+|+++++|.---+..+-..+
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~-lp--~~~l~rIa~kS~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-Q-LP--KELLKRIAEKSNRNLRRALLMLEAV 232 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-c-Cc--HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 6788775432 222222223457889999999999999887643321 1 12 5689999999999654444443333
Q ss_pred cCCC----------CHHHHHHHHhhhhhhh
Q 002115 392 QSRN----------TEKEWQNILESEIWEL 411 (965)
Q Consensus 392 ~~~~----------~~~~w~~~l~~~~~~~ 411 (965)
+-+. ..-+|.-++.+....+
T Consensus 233 ~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i 262 (351)
T KOG2035|consen 233 RVNNEPFTANSQVIPKPDWEIYIQEIARVI 262 (351)
T ss_pred HhccccccccCCCCCCccHHHHHHHHHHHH
Confidence 2211 2347888776654443
No 296
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.51 E-value=0.043 Score=59.63 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=72.4
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHH
Q 002115 179 EIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIE 258 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 258 (965)
.++|+...+.++.+.+..... ...-|.|+|..|+||+++|+.++.... ..-...+.|++..- +...+...+..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~--r~~~pfv~v~c~~~-~~~~~~~~lfg 79 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAAL-NENLLDSELFG 79 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCC--ccCCCeEEEeCCCC-CHHHHHHHHcc
Confidence 589999999999888765432 233588999999999999999986411 11122334444432 22222222221
Q ss_pred HhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC-----------CCcEEEEeecch
Q 002115 259 SLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL-----------HESKILITTRKE 324 (965)
Q Consensus 259 ~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 324 (965)
.-.+...+.. ......+. ....=.|+||++..-.......+...+..+. ...+||.||...
T Consensus 80 ~~~~~~~g~~--~~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 80 HEAGAFTGAQ--KRHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred ccccccCCcc--cccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 1000000000 00001111 1222357899998765556666766665432 135888887643
No 297
>PRK03839 putative kinase; Provisional
Probab=95.48 E-value=0.02 Score=56.46 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999976
No 298
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.47 E-value=0.12 Score=58.06 Aligned_cols=88 Identities=13% Similarity=0.091 Sum_probs=46.4
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCC-CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCC
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPF-DEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEG 283 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 283 (965)
.+++.++|++|+||||++..+.........-..++.|+..... .....++...+.++.......+.+++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 4699999999999999988876542201222345566653311 011223333333333222223334555555442 2
Q ss_pred ceEEEEEeCCC
Q 002115 284 KKFLLVLDDLW 294 (965)
Q Consensus 284 kr~LlVlDdv~ 294 (965)
..=+|++|..-
T Consensus 299 ~~DlVlIDt~G 309 (424)
T PRK05703 299 DCDVILIDTAG 309 (424)
T ss_pred CCCEEEEeCCC
Confidence 34578889663
No 299
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.46 E-value=0.13 Score=50.24 Aligned_cols=102 Identities=13% Similarity=0.010 Sum_probs=55.3
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEE------cCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVC------VSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQE 279 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~ 279 (965)
.+++|+|..|.|||||++.+..-. ......+++. +.+... .+.-+...-.+.+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~lar 84 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAA 84 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHH
Confidence 499999999999999999998742 1222333321 112111 1111222333455
Q ss_pred HhCCceEEEEEeCCCcc-hhhchHhHHhhhcCC--CCCcEEEEeecchHHHh
Q 002115 280 CVEGKKFLLVLDDLWNE-VYYKWEPFYKCLKNG--LHESKILITTRKEIVAR 328 (965)
Q Consensus 280 ~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~ 328 (965)
.+..++-++++|+--.. +......+...+... ..+..||++|.......
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 55667788999987432 122233333333321 12256777777655443
No 300
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.44 E-value=0.065 Score=55.12 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=24.0
Q ss_pred CCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 202 QKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 202 ~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.....+++|.|..|.|||||++.+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999999875
No 301
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.42 E-value=0.0049 Score=61.71 Aligned_cols=59 Identities=24% Similarity=0.224 Sum_probs=28.7
Q ss_pred ccCCCcEEEeCCc--cCccccchhhhccCCCcEEeccCcccccccCcc---ccCCCCccEeecCCC
Q 002115 619 NLLHLKYLNLAHQ--REIEKLPETLCELYNLEHLDISYCRNLRELPQG---IGKLRKLMYLENDGT 679 (965)
Q Consensus 619 ~L~~Lr~L~L~~~--~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~---i~~L~~L~~L~l~~~ 679 (965)
.|++|++|.++.| +....++-..-++++|++|++++|+ +.. +++ +.++++|..|++.+|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhhcchhhhhcccC
Confidence 4555666666555 3333444444444556666666555 332 122 234444555555544
No 302
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.42 E-value=0.083 Score=56.89 Aligned_cols=58 Identities=21% Similarity=0.165 Sum_probs=40.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHccccccc----cccceEEEEcCCCCCHHHHHHHHHHHhc
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNNDGVKR----NFEKRIWVCVSEPFDEFRIARAIIESLT 261 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 261 (965)
..-.++.|+|.+|+|||||+..++....... .-..++|++....++..++ ..+++.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 3567999999999999999988875321111 1125689998888888764 34455443
No 303
>PRK09354 recA recombinase A; Provisional
Probab=95.42 E-value=0.05 Score=58.57 Aligned_cols=85 Identities=20% Similarity=0.192 Sum_probs=56.2
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHH
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSA-----SNFGEFQSLMQHI 277 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l 277 (965)
+.-+++-|+|.+|+||||||.+++.. ....-..++||+....+++. .+++++... ......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 35679999999999999999888765 22333567899988877763 334443220 1122355555555
Q ss_pred HHHhC-CceEEEEEeCCC
Q 002115 278 QECVE-GKKFLLVLDDLW 294 (965)
Q Consensus 278 ~~~l~-~kr~LlVlDdv~ 294 (965)
...++ ++.-+||+|.|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55554 456689999984
No 304
>PRK05439 pantothenate kinase; Provisional
Probab=95.41 E-value=0.083 Score=56.11 Aligned_cols=95 Identities=19% Similarity=0.240 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccccccc--ccceEEEEcCCCCCHHHHHHHHHHHhc-
Q 002115 185 EEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRN--FEKRIWVCVSEPFDEFRIARAIIESLT- 261 (965)
Q Consensus 185 ~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~i~~~l~- 261 (965)
.....+...++... ....+-+|+|.|.+|+||||+|+.+..- .... -..+.-++...-+-....+.. ..+.
T Consensus 68 ~~~~~~~~~fl~~~--~~~~~~iIgIaG~~gsGKSTla~~L~~~--l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~ 141 (311)
T PRK05439 68 QRLQAALEQFLGKN--GQKVPFIIGIAGSVAVGKSTTARLLQAL--LSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMK 141 (311)
T ss_pred HHHHHHHHHHhccc--CCCCCEEEEEECCCCCCHHHHHHHHHHH--HHhhCCCCceEEEeccccccCHHHHhh--hhccc
Confidence 33444444444322 2346789999999999999999988763 2221 122334444433323222221 1111
Q ss_pred -CCCCCCCCHHHHHHHHHHHhCCce
Q 002115 262 -GSASNFGEFQSLMQHIQECVEGKK 285 (965)
Q Consensus 262 -~~~~~~~~~~~l~~~l~~~l~~kr 285 (965)
...++.-+.+.+...+.....++.
T Consensus 142 ~kg~Pes~D~~~l~~~L~~Lk~G~~ 166 (311)
T PRK05439 142 RKGFPESYDMRALLRFLSDVKSGKP 166 (311)
T ss_pred cCCCcccccHHHHHHHHHHHHcCCC
Confidence 112445567777777777666654
No 305
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.41 E-value=0.071 Score=57.87 Aligned_cols=56 Identities=23% Similarity=0.256 Sum_probs=40.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcccccccc----ccceEEEEcCCCCCHHHHHHHHHHHh
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRN----FEKRIWVCVSEPFDEFRIARAIIESL 260 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l 260 (965)
.-.++-|+|.+|+|||+++.+++-....... =..++||+....+++.++.+. ++.+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~ 160 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEAL 160 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHc
Confidence 4679999999999999999888754222111 136889999998888776543 3444
No 306
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.40 E-value=0.065 Score=55.42 Aligned_cols=87 Identities=21% Similarity=0.223 Sum_probs=53.8
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCC------------------
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSA------------------ 264 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------------ 264 (965)
+.-.++.|+|.+|+|||++|.++.... .+ +=..++|++..+. +..+.+.+ ++++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 355799999999999999999985431 12 2236778888653 45555543 2332110
Q ss_pred --CCCCCHHHHHHHHHHHhCC-ceEEEEEeCCC
Q 002115 265 --SNFGEFQSLMQHIQECVEG-KKFLLVLDDLW 294 (965)
Q Consensus 265 --~~~~~~~~l~~~l~~~l~~-kr~LlVlDdv~ 294 (965)
......+.+...+...+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666653 55589999975
No 307
>PRK00625 shikimate kinase; Provisional
Probab=95.40 E-value=0.054 Score=52.60 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.|.++||+|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999875
No 308
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.32 Score=57.17 Aligned_cols=181 Identities=18% Similarity=0.175 Sum_probs=99.2
Q ss_pred CccccchH---HHHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHH
Q 002115 178 SEIFGREE---EKNELVNRLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFR 251 (965)
Q Consensus 178 ~~~vGr~~---~~~~i~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 251 (965)
.++.|-++ |+++++++|..+.. -+..-++=+.++|++|.|||-||++++....+- |+++|.
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSG------ 377 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSG------ 377 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeech------
Confidence 35778775 55555666644321 122346778999999999999999999874432 444443
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhCCceEEEEEeCCCcch---------------hhchHhHHhhhcCCCCCc
Q 002115 252 IARAIIESLTGSASNFGEFQSLMQHIQE-CVEGKKFLLVLDDLWNEV---------------YYKWEPFYKCLKNGLHES 315 (965)
Q Consensus 252 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~---------------~~~~~~l~~~l~~~~~gs 315 (965)
.+.++.+.+.. ....+.+.. .-...+.+|.+|++.... .....++..-+.....++
T Consensus 378 --SEFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 378 --SEFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred --HHHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 12222222211 112222222 223567888888874411 112333433333332223
Q ss_pred -EEEE-eecchHHHh-h-cC---CcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHh
Q 002115 316 -KILI-TTRKEIVAR-C-MR---STNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLA 383 (965)
Q Consensus 316 -~ilv-TtR~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPla 383 (965)
.|++ +|+...+.. . +. -++.+.++.=+.....++|..++-.-.. ..+..++++ |+...-|.+=|
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHH
Confidence 3333 444333322 1 11 2567888888888888999888743322 134455566 88887777644
No 309
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.38 E-value=0.071 Score=57.75 Aligned_cols=57 Identities=19% Similarity=0.175 Sum_probs=41.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccc----cccceEEEEcCCCCCHHHHHHHHHHHhc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKR----NFEKRIWVCVSEPFDEFRIARAIIESLT 261 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 261 (965)
.-.++-|+|.+|+|||+|+..++-...... .-..++|++....|+++++. +|++.++
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 457899999999999999987774322111 11268899999999888764 4556554
No 310
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.36 E-value=0.074 Score=60.02 Aligned_cols=89 Identities=17% Similarity=0.098 Sum_probs=46.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSE-PFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVE 282 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 282 (965)
...+|+|+|.+|+||||++.++......+.....+..++... .......++...+.++.......+...+...+.+. .
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c
Confidence 457999999999999999988876421111123344554422 11122222222232322211222334444444433 3
Q ss_pred CceEEEEEeCCC
Q 002115 283 GKKFLLVLDDLW 294 (965)
Q Consensus 283 ~kr~LlVlDdv~ 294 (965)
..=+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 34578888874
No 311
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.36 E-value=0.066 Score=64.89 Aligned_cols=135 Identities=15% Similarity=0.196 Sum_probs=74.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
..++|+...++.+.+.+..... ...-|.|+|..|+|||++|+.+++.... .-...+.+++..-. ...+-..+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r--~~~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGR--NNRRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCC--CCCCeEEEecccCC-hhHhhhhhc
Confidence 3689999999998877754332 3346889999999999999999875221 11233444444321 111111211
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC-----------CCcEEEEeecch
Q 002115 258 ESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL-----------HESKILITTRKE 324 (965)
Q Consensus 258 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 324 (965)
....+...+.. ......+. ....=.|+||+|..-.......+...+..+. .+.|||.||...
T Consensus 449 g~~~~~~~g~~--~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGAFTGAS--AQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Ccccccccccc--cchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 11111101100 01111121 1223469999998765555666766664431 345888888653
No 312
>PRK07667 uridine kinase; Provisional
Probab=95.35 E-value=0.021 Score=56.87 Aligned_cols=38 Identities=29% Similarity=0.382 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 187 KNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 187 ~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456666665432 35589999999999999999999875
No 313
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.23 Score=51.35 Aligned_cols=80 Identities=20% Similarity=0.264 Sum_probs=47.1
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccc--cccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGV--KRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVE 282 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 282 (965)
-++|.++|++|.|||+|.+.+++.-.+ .+.|....-+.++. ..+......+ ...-+..+.+.+++.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 478999999999999999999987443 34555444454432 1222222111 12233445555666665
Q ss_pred Cc--eEEEEEeCCC
Q 002115 283 GK--KFLLVLDDLW 294 (965)
Q Consensus 283 ~k--r~LlVlDdv~ 294 (965)
++ =.++.+|.|.
T Consensus 247 d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVE 260 (423)
T ss_pred CCCcEEEEEeHHHH
Confidence 44 3455678883
No 314
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.30 E-value=0.081 Score=53.96 Aligned_cols=125 Identities=15% Similarity=0.090 Sum_probs=71.7
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCC-----CCCHHHHHHHHHHHhcCCC------CCCCCHHHH
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSE-----PFDEFRIARAIIESLTGSA------SNFGEFQSL 273 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~------~~~~~~~~l 273 (965)
-.+++|||..|.||||+++.+..= ...-.+.++..-.+ .....+-..++++.++... +..-+-.+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 349999999999999999999874 33334445443211 1223344556666655331 222222333
Q ss_pred HH-HHHHHhCCceEEEEEeCCCcch-hhchHhHHhhhcC--CCCCcEEEEeecchHHHhhcCC
Q 002115 274 MQ-HIQECVEGKKFLLVLDDLWNEV-YYKWEPFYKCLKN--GLHESKILITTRKEIVARCMRS 332 (965)
Q Consensus 274 ~~-~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~~~ 332 (965)
++ .+.+.+.-++-++|.|..-+.. ...-.++...+.+ ...|-..+..|.+-.++..+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 33 3566777889999999864321 1111223332322 2346678888888777776543
No 315
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.27 E-value=0.061 Score=54.71 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=39.8
Q ss_pred EEEEEecCCChHHHHHHHHHccccccc-cc-cceEEEEcCCCCCHHHHHHHHHHHhc-CCCCCCCCHHHHHHHHHHHhC
Q 002115 207 IISLVGMGGIGKTTLAQFAYNNDGVKR-NF-EKRIWVCVSEPFDEFRIARAIIESLT-GSASNFGEFQSLMQHIQECVE 282 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F-~~~~wv~vs~~~~~~~~~~~i~~~l~-~~~~~~~~~~~l~~~l~~~l~ 282 (965)
+|+|.|..|+||||+|+.+... +.. .. ..+..|+...-+.....+.... .+. ...++..+.+.+...+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~--l~~~~~~~~v~vi~~D~f~~~~~~~~~~~-~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL--LSRWPDHPNVELITTDGFLYPNKELIERG-LMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH--HhhcCCCCcEEEEecCcccCcHHHHHHhh-hhhcCCCcccCCHHHHHHHHHHHHC
Confidence 5899999999999999999875 321 01 1234555544333322222211 111 112344566666666665544
No 316
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.26 E-value=0.12 Score=50.45 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
++.++|++|+||||+++.+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998865
No 317
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.25 E-value=0.44 Score=50.81 Aligned_cols=61 Identities=10% Similarity=0.138 Sum_probs=40.3
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHH
Q 002115 179 EIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRI 252 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 252 (965)
.++-..+....+..++... +.|.|.|.+|+||||+|+.+... .... .+.|..+...+..++
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~--l~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAAR--LNWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHH--HCCC---eEEEEecCCCChhhc
Confidence 4555555666777777432 36899999999999999999876 3322 234555554444433
No 318
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.24 E-value=0.057 Score=58.88 Aligned_cols=89 Identities=16% Similarity=0.140 Sum_probs=49.0
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCC
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSE-PFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEG 283 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 283 (965)
..++.++|+.|+||||++.++......+.....+..++... .....+-++...+.++.......+...+...+.+ +.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hcC
Confidence 45999999999999999999987522111122345555322 1233444555555555432222222233333333 344
Q ss_pred ceEEEEEeCCCc
Q 002115 284 KKFLLVLDDLWN 295 (965)
Q Consensus 284 kr~LlVlDdv~~ 295 (965)
+ =+|++|..-.
T Consensus 216 ~-DlVLIDTaG~ 226 (374)
T PRK14722 216 K-HMVLIDTIGM 226 (374)
T ss_pred C-CEEEEcCCCC
Confidence 4 4566898743
No 319
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.24 E-value=0.079 Score=55.85 Aligned_cols=80 Identities=19% Similarity=0.174 Sum_probs=43.3
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHccccccccc-c-ceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNF-E-KRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQEC 280 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~ 280 (965)
..+.+|+|.|..|+||||+|+.+..- ..... . .+..++...-......+...-..-....++..+.+.+...+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l--l~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL--LSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHH
Confidence 46789999999999999999877543 22111 1 23444444333222322221000001224455667777776666
Q ss_pred hCCc
Q 002115 281 VEGK 284 (965)
Q Consensus 281 l~~k 284 (965)
..++
T Consensus 138 k~g~ 141 (290)
T TIGR00554 138 KSGK 141 (290)
T ss_pred HCCC
Confidence 5554
No 320
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.22 E-value=0.016 Score=53.45 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
--|.|.|++|+||||+++.+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHH
Confidence 46899999999999999999976
No 321
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.21 E-value=0.089 Score=51.45 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=58.4
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCC--CCCHHHHHHHHHHHhcCCCCC----------CCCHHHH
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSE--PFDEFRIARAIIESLTGSASN----------FGEFQSL 273 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~----------~~~~~~l 273 (965)
.+++|+|..|.|||||.+.+..-. ......+++.-.. ........+.+. .+ .+... .+.-+..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~-~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHVG-YL-PQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhheE-EE-CCCCccccCcHHHHCcCHHHHH
Confidence 489999999999999999998742 2233333332110 011111111110 00 00000 0111122
Q ss_pred HHHHHHHhCCceEEEEEeCCCcc-hhhchHhHHhhhcCC-CCCcEEEEeecchHHHh
Q 002115 274 MQHIQECVEGKKFLLVLDDLWNE-VYYKWEPFYKCLKNG-LHESKILITTRKEIVAR 328 (965)
Q Consensus 274 ~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 328 (965)
.-.+.+.+..++=++++|+.... +......+...+... ..|..||++|.+.....
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22344455566678899987541 222233333433321 23667888887766554
No 322
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.19 E-value=0.15 Score=52.94 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.1
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+-.|+|++|+|||+||..++-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 6689999999999999888754
No 323
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.19 E-value=0.035 Score=59.25 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=24.6
Q ss_pred CCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 202 QKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 202 ~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-..++.+.|+|++|.|||.+|+.+++.
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 346789999999999999999999987
No 324
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.18 E-value=0.076 Score=57.68 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=34.8
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 180 IFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 180 ~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
++|....++++.+.+..... ...-|.|+|..|+||+++|+.++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46888788888877765432 2335789999999999999999865
No 325
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.17 E-value=0.0037 Score=72.93 Aligned_cols=242 Identities=22% Similarity=0.236 Sum_probs=117.2
Q ss_pred ccCCCcEEEeCCccCccc--cchhhhccCCCcEEeccCc-ccccccC----ccccCCCCccEeecCCCcccccccccCCC
Q 002115 619 NLLHLKYLNLAHQREIEK--LPETLCELYNLEHLDISYC-RNLRELP----QGIGKLRKLMYLENDGTYSLRYLPVGIGE 691 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~~--lp~~i~~L~~L~~LdL~~~-~~l~~lP----~~i~~L~~L~~L~l~~~~~~~~~p~~i~~ 691 (965)
..+.|+.|.+..+..+.. +-.....+++|+.|++++| ......| .....+.+|++|+++++..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~---------- 255 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL---------- 255 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc----------
Confidence 367777777777754554 3345667788888888763 2122111 1123345555555555421
Q ss_pred cccccccCceEecCccCCCCCccc----cccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCccc
Q 002115 692 LIRLRIVKEFVVGGGYDRACSLGS----LKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQ 767 (965)
Q Consensus 692 l~~L~~L~l~~~~~~~~~~~~~~~----l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~ 767 (965)
.. ...+.. +++|+.| ....+..+. ...+......+++|++|+++++...
T Consensus 256 -------------is---d~~l~~l~~~c~~L~~L---~l~~c~~lt--~~gl~~i~~~~~~L~~L~l~~c~~~------ 308 (482)
T KOG1947|consen 256 -------------VT---DIGLSALASRCPNLETL---SLSNCSNLT--DEGLVSIAERCPSLRELDLSGCHGL------ 308 (482)
T ss_pred -------------cC---chhHHHHHhhCCCcceE---ccCCCCccc--hhHHHHHHHhcCcccEEeeecCccc------
Confidence 10 111111 2333333 222222222 1233344456667788887776321
Q ss_pred ccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCC--CCCC--CCCCCCccee
Q 002115 768 AGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCE--HLPP--LGKLPSIEVL 843 (965)
Q Consensus 768 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~--~lp~--l~~L~~L~~L 843 (965)
.+..+......+++|+.|.+..... ++.++.+.+..+.... .+.. +..+++|+.+
T Consensus 309 ---------~d~~l~~~~~~c~~l~~l~~~~~~~------------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~ 367 (482)
T KOG1947|consen 309 ---------TDSGLEALLKNCPNLRELKLLSLNG------------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDL 367 (482)
T ss_pred ---------hHHHHHHHHHhCcchhhhhhhhcCC------------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchh
Confidence 1111222233466666655433221 3344455554443221 1211 5566667777
Q ss_pred eecCCCCceEeCccccCCCCCCCCccccCCccccccccccccccc-ccCcccccccccccCcccceEeeccCccCcCCCc
Q 002115 844 EIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLE-EWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPD 922 (965)
Q Consensus 844 ~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~-~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~ 922 (965)
.|..|. ....+. .+.+.+|+.|+ .+... ......|+.|++..|...+.---
T Consensus 368 ~l~~~~-~~~~~~---------------------~~~l~gc~~l~~~l~~~------~~~~~~l~~L~l~~~~~~t~~~l 419 (482)
T KOG1947|consen 368 SLSYCG-ISDLGL---------------------ELSLRGCPNLTESLELR------LCRSDSLRVLNLSDCRLVTDKGL 419 (482)
T ss_pred hhhhhh-ccCcch---------------------HHHhcCCcccchHHHHH------hccCCccceEecccCccccccch
Confidence 666654 221111 33344444441 11111 11334499999999986543210
Q ss_pred --CCCCCCCCCeEeEcCCcchHHhhc
Q 002115 923 --RLLQKTTLQALTIGECPILEERCR 946 (965)
Q Consensus 923 --~l~~l~~L~~L~l~~c~~l~~~~~ 946 (965)
....+.++..+++.+|+.+.....
T Consensus 420 ~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 420 RCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred HHHhhhhhccccCCccCcccccchhh
Confidence 111167889999999998765543
No 326
>PRK14974 cell division protein FtsY; Provisional
Probab=95.17 E-value=0.15 Score=55.15 Aligned_cols=114 Identities=17% Similarity=0.173 Sum_probs=56.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCH--HHHHHHHHHHhcCCC---CCCCCHHH-HHHHH
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDE--FRIARAIIESLTGSA---SNFGEFQS-LMQHI 277 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~-l~~~l 277 (965)
++.+|.++|++|+||||++..++.... ...+ .++.+. .+.+.. ..-++.....++... ....+... +...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998888776421 1223 233343 222322 233455555555321 11122222 22333
Q ss_pred HHHh-CCceEEEEEeCCCcc--hhhchHhHHhhhcCCCCCcEEEEee
Q 002115 278 QECV-EGKKFLLVLDDLWNE--VYYKWEPFYKCLKNGLHESKILITT 321 (965)
Q Consensus 278 ~~~l-~~kr~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~ilvTt 321 (965)
...- .+.. +|++|-.-.. +...++.+........+.-.++|.+
T Consensus 216 ~~~~~~~~D-vVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~ 261 (336)
T PRK14974 216 EHAKARGID-VVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGD 261 (336)
T ss_pred HHHHhCCCC-EEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeec
Confidence 3222 2333 8999987543 2223444433332223334455433
No 327
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.16 E-value=0.009 Score=35.47 Aligned_cols=19 Identities=26% Similarity=0.718 Sum_probs=9.9
Q ss_pred CcEEEeCCccCccccchhhh
Q 002115 623 LKYLNLAHQREIEKLPETLC 642 (965)
Q Consensus 623 Lr~L~L~~~~~i~~lp~~i~ 642 (965)
|++|+|++|. ++.+|.+|+
T Consensus 2 L~~Ldls~n~-l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSE-ESEEGTTTT
T ss_pred ccEEECCCCc-CEeCChhhc
Confidence 4555555554 445555443
No 328
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.26 Score=55.46 Aligned_cols=155 Identities=19% Similarity=0.300 Sum_probs=85.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCC
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEG 283 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 283 (965)
.+.=|.++|++|.|||-||++|+|. .+..| ++|-.+ +++...-+ .....+...+++.-..
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP--------ELlNkYVG-----ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP--------ELLNKYVG-----ESERAVRQVFQRARAS 603 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH--------HHHHHHhh-----hHHHHHHHHHHHhhcC
Confidence 3556889999999999999999998 33444 444321 11111111 1122333334444457
Q ss_pred ceEEEEEeCCCcc-----h------hhchHhHHhhhcC--CCCCcEEEEeecchHH-Hhhc-CC---cceEeCCCCChHH
Q 002115 284 KKFLLVLDDLWNE-----V------YYKWEPFYKCLKN--GLHESKILITTRKEIV-ARCM-RS---TNVIYVNVLSEIE 345 (965)
Q Consensus 284 kr~LlVlDdv~~~-----~------~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v-~~~~-~~---~~~~~l~~L~~~~ 345 (965)
-+++|.||.++.- + .....++..-+.. ...|.-||-.|....+ -..+ .. +....++.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 8999999998541 1 1123334444433 2356566666644433 2222 22 4466677778888
Q ss_pred HHHHHHHHhccCCCc-cchhHHHHHHHHHHHHcCCC
Q 002115 346 CWSVFEQLAFFGRSM-EECEKLENMGRQIVRKCKGL 380 (965)
Q Consensus 346 ~~~lf~~~~~~~~~~-~~~~~l~~~~~~i~~~c~Gl 380 (965)
-.++++...-....+ ...-+++++++. .+|.|.
T Consensus 684 R~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gf 717 (802)
T KOG0733|consen 684 RVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGF 717 (802)
T ss_pred HHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCC
Confidence 889998877532222 223455555542 355553
No 329
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.12 E-value=0.17 Score=56.71 Aligned_cols=56 Identities=27% Similarity=0.251 Sum_probs=34.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCH--HHHHHHHHHHhcC
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDE--FRIARAIIESLTG 262 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~ 262 (965)
.+.+|.++|.+|+||||+|..++... +..-..++.|++.. +.+ .+.++.+.++++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L--~~~g~kV~lV~~D~-~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF--KKKGLKVGLVAADT-YRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEecCCC-CCHHHHHHHHHHHHHcCC
Confidence 56799999999999999999988753 22211333444332 222 3345555555543
No 330
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.11 E-value=0.03 Score=59.52 Aligned_cols=52 Identities=31% Similarity=0.416 Sum_probs=45.4
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 177 ESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...|+|.++.++++++.+...+...+..-+|+.++|+.|.||||||+.+.+-
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999998776555667899999999999999999998765
No 331
>PTZ00301 uridine kinase; Provisional
Probab=95.11 E-value=0.023 Score=57.04 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+..+|+|.|.+|+||||||+.+.+.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHH
Confidence 3569999999999999999988765
No 332
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.07 E-value=0.066 Score=58.52 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=50.4
Q ss_pred CccccchHHHHHHHHHHhcC--------CCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccc---cceEEEEcC-C
Q 002115 178 SEIFGREEEKNELVNRLLCE--------SSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNF---EKRIWVCVS-E 245 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs-~ 245 (965)
..++|.++.++.+.-.+... .-...-.++.|.++|++|+|||++|+.+... ....| +...|...+ .
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcc
Confidence 46889998888887666531 0001123467899999999999999999876 33333 332232222 2
Q ss_pred CCCHHHHHHHHHHHh
Q 002115 246 PFDEFRIARAIIESL 260 (965)
Q Consensus 246 ~~~~~~~~~~i~~~l 260 (965)
..+.+.+++.+.+..
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666665543
No 333
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.05 E-value=0.23 Score=56.13 Aligned_cols=130 Identities=15% Similarity=0.219 Sum_probs=70.8
Q ss_pred EEEEEEecCCChHHH-HHHHHHccccccccccceEEEEcCCCCCHH--HHHHHHHHHhcCCCCC----------------
Q 002115 206 CIISLVGMGGIGKTT-LAQFAYNNDGVKRNFEKRIWVCVSEPFDEF--RIARAIIESLTGSASN---------------- 266 (965)
Q Consensus 206 ~vv~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~~---------------- 266 (965)
.||.|||.-|.|||| |||.+|.+ -|...--+-+.|+..+. .+.+.+.+.++..-..
T Consensus 372 ~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T 446 (1042)
T KOG0924|consen 372 QVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDT 446 (1042)
T ss_pred cEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCce
Confidence 499999999999987 66777765 23222244555555443 3566777777543110
Q ss_pred ----CCCHHHHHHHHHHHhCCceEEEEEeCCCcchh--hchHhHHhhhcCCCCCcEEEEeecch---HHHhhcCCcceEe
Q 002115 267 ----FGEFQSLMQHIQECVEGKKFLLVLDDLWNEVY--YKWEPFYKCLKNGLHESKILITTRKE---IVARCMRSTNVIY 337 (965)
Q Consensus 267 ----~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~---~v~~~~~~~~~~~ 337 (965)
..+.--+.+.|....-.|--.||+|.+.+... +-.-.+..........-|+||||-.- ..+..++....+.
T Consensus 447 ~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p~f~ 526 (1042)
T KOG0924|consen 447 KIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCPQFT 526 (1042)
T ss_pred eEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCceee
Confidence 01122233334444445666899999865321 11111222222334578999999753 3444455444444
Q ss_pred CCC
Q 002115 338 VNV 340 (965)
Q Consensus 338 l~~ 340 (965)
+.+
T Consensus 527 IpG 529 (1042)
T KOG0924|consen 527 IPG 529 (1042)
T ss_pred ecC
Confidence 433
No 334
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=0.0025 Score=63.71 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=17.5
Q ss_pred ccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcc
Q 002115 619 NLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCR 656 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~ 656 (965)
+++.|++|.||-|+ |+.|.. +..+++|+.|.|+.|.
T Consensus 39 kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~ 74 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC 74 (388)
T ss_pred hcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc
Confidence 44455555555554 444433 4444555555555444
No 335
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.1 Score=61.68 Aligned_cols=155 Identities=22% Similarity=0.255 Sum_probs=86.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccc-----cceEEEEcCCCCCHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNF-----EKRIWVCVSEPFDEFRI 252 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-----~~~~wv~vs~~~~~~~~ 252 (965)
..++||++|++++++.|..... + --.++|.+|+|||++|.-++... +.+.- +..++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----N--NPvLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~s----------- 231 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----N--NPVLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIYS----------- 231 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----C--CCeEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEEE-----------
Confidence 3589999999999999986543 1 22478999999999886655431 11111 122221
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHh-CCceEEEEEeCCCcc---------hhhchHhHHhhhcCCCCCcEEEEeec
Q 002115 253 ARAIIESLTGSASNFGEFQSLMQHIQECV-EGKKFLLVLDDLWNE---------VYYKWEPFYKCLKNGLHESKILITTR 322 (965)
Q Consensus 253 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR 322 (965)
-++..-+.+... ..++++....+-+.+ +.++..|++|.+..- ..+.-.-++.+|..+. --.|=-||-
T Consensus 232 -LD~g~LvAGaky-RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT~ 308 (786)
T COG0542 232 -LDLGSLVAGAKY-RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATTL 308 (786)
T ss_pred -ecHHHHhccccc-cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEeccH
Confidence 112222222222 234444444443333 355899999998541 1222223444454443 224555665
Q ss_pred chHHHh------hcCCcceEeCCCCChHHHHHHHHHH
Q 002115 323 KEIVAR------CMRSTNVIYVNVLSEIECWSVFEQL 353 (965)
Q Consensus 323 ~~~v~~------~~~~~~~~~l~~L~~~~~~~lf~~~ 353 (965)
++.--. .....+.+.+..-+.+++...++-.
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 442111 1122568889999999998888754
No 336
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=0.0021 Score=64.28 Aligned_cols=100 Identities=23% Similarity=0.239 Sum_probs=66.6
Q ss_pred hcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccch--
Q 002115 562 HVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPE-- 639 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~-- 639 (965)
++.+.+.|.+-|+..+.+ ....+++.|+||.|+.|.+ ..+ ..+..+++|+.|.|+.|. |..+-+
T Consensus 17 dl~~vkKLNcwg~~L~DI-----sic~kMp~lEVLsLSvNkI-------ssL-~pl~rCtrLkElYLRkN~-I~sldEL~ 82 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-----SICEKMPLLEVLSLSVNKI-------SSL-APLQRCTRLKELYLRKNC-IESLDELE 82 (388)
T ss_pred HHHHhhhhcccCCCccHH-----HHHHhcccceeEEeecccc-------ccc-hhHHHHHHHHHHHHHhcc-cccHHHHH
Confidence 344556666666653222 1257788888888885544 333 346677888888888888 766654
Q ss_pred hhhccCCCcEEeccCcccccccCcc-----ccCCCCccEee
Q 002115 640 TLCELYNLEHLDISYCRNLRELPQG-----IGKLRKLMYLE 675 (965)
Q Consensus 640 ~i~~L~~L~~LdL~~~~~l~~lP~~-----i~~L~~L~~L~ 675 (965)
.+.+|++|++|.|..|.....-+.. +..|+||+.|+
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 4678888888888888755554432 45677777775
No 337
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.00 E-value=0.25 Score=49.55 Aligned_cols=66 Identities=14% Similarity=0.086 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCc-chhhchHhHHhhhcCC--CCCcEEEEeecchHHHhhcCCcceEeC
Q 002115 271 QSLMQHIQECVEGKKFLLVLDDLWN-EVYYKWEPFYKCLKNG--LHESKILITTRKEIVARCMRSTNVIYV 338 (965)
Q Consensus 271 ~~l~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~~~~~~~~~l 338 (965)
++-.-.+.+.+-..+-+|+.|+--. -+.+.=+.+...+... ..|..||+.|.+..+|..+ .+++.+
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~--dr~i~l 215 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA--DRVIEL 215 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC--CEEEEE
Confidence 3334456677778888999997421 1122223344444432 3477899999999999854 344444
No 338
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.98 E-value=0.21 Score=52.97 Aligned_cols=54 Identities=20% Similarity=0.128 Sum_probs=37.0
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLT 261 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 261 (965)
-.++.|.|.+|+||||++.++....- ..+=..++|++... +..++...+...+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~~ 83 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQYA 83 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHHh
Confidence 34888999999999999988876521 22123577887765 45666666655543
No 339
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.97 E-value=0.028 Score=52.98 Aligned_cols=36 Identities=31% Similarity=0.241 Sum_probs=26.7
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEE
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVC 242 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 242 (965)
..||.|.|.+|.||||||+++... ....-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 358999999999999999999976 444434455553
No 340
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.95 E-value=0.15 Score=56.96 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
++.++.++|.+|+||||.|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999998777654
No 341
>PTZ00035 Rad51 protein; Provisional
Probab=94.94 E-value=0.16 Score=55.24 Aligned_cols=58 Identities=22% Similarity=0.186 Sum_probs=39.7
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHcccccc----ccccceEEEEcCCCCCHHHHHHHHHHHhc
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNNDGVK----RNFEKRIWVCVSEPFDEFRIARAIIESLT 261 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 261 (965)
..-.++.|+|.+|+|||||+..++-..... +.=..++|++-...++++++ ..+++.++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 356799999999999999998887542211 11134669998887887774 44455543
No 342
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.93 E-value=0.18 Score=55.60 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=57.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccc--cccceEEEEcCCCCCHHH--HHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKR--NFEKRIWVCVSEPFDEFR--IARAIIESLTGSASNFGEFQSLMQHIQE 279 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~~~~~--~~~~i~~~l~~~~~~~~~~~~l~~~l~~ 279 (965)
..++|.++|..|+||||.+..+........ +=..+..|++. .+.... -++..++.++.+-......+.+...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 457999999999999999988876522211 11234455554 333322 3445555454432223344555555544
Q ss_pred HhCCceEEEEEeCCCcch--hhchHhHHhhhcC
Q 002115 280 CVEGKKFLLVLDDLWNEV--YYKWEPFYKCLKN 310 (965)
Q Consensus 280 ~l~~kr~LlVlDdv~~~~--~~~~~~l~~~l~~ 310 (965)
. .+.=+|++|..-... ......+...+..
T Consensus 252 ~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~ 282 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSPKDFMKLAEMKELLNA 282 (388)
T ss_pred h--CCCCEEEEcCCCCCccCHHHHHHHHHHHHh
Confidence 3 345688899885422 1123444444443
No 343
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.92 E-value=0.019 Score=52.94 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=19.4
Q ss_pred EEEEecCCChHHHHHHHHHcc
Q 002115 208 ISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 208 v~I~G~gGiGKTtLa~~v~~~ 228 (965)
|.|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999876
No 344
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.89 E-value=0.1 Score=51.00 Aligned_cols=117 Identities=18% Similarity=0.117 Sum_probs=59.8
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhc--CCCC---C---------CCCHH
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLT--GSAS---N---------FGEFQ 271 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~--~~~~---~---------~~~~~ 271 (965)
.+++|+|..|.|||||++.+.... ......+++.-....+.. ..+...++ .+.. . .+.-+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 489999999999999999998752 123344443211000000 01111111 0000 0 01111
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCcc-hhhchHhHHhhhcCC-CCCcEEEEeecchHHHh
Q 002115 272 SLMQHIQECVEGKKFLLVLDDLWNE-VYYKWEPFYKCLKNG-LHESKILITTRKEIVAR 328 (965)
Q Consensus 272 ~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 328 (965)
...-.+.+.+..++=++++|+.-.. +......+...+... ..|..||++|.+.....
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 2222355566678889999987442 222333344444332 23677888888766544
No 345
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.88 E-value=0.055 Score=54.79 Aligned_cols=121 Identities=11% Similarity=0.106 Sum_probs=58.2
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHHH--
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSAS---NFGEFQSLMQHIQE-- 279 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---~~~~~~~l~~~l~~-- 279 (965)
.+++.|+|..|.||||+.+.+...... . +.-.||.+.. .. .....++...+..... .......-...+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a--~~G~~v~a~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-A--HIGSFVPADS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-H--hCCCeeEcCC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 478999999999999999998743111 1 1111221111 00 0011112222221110 01111111122222
Q ss_pred HhCCceEEEEEeCCCcch-hhch----HhHHhhhcCC-CCCcEEEEeecchHHHhhc
Q 002115 280 CVEGKKFLLVLDDLWNEV-YYKW----EPFYKCLKNG-LHESKILITTRKEIVARCM 330 (965)
Q Consensus 280 ~l~~kr~LlVlDdv~~~~-~~~~----~~l~~~l~~~-~~gs~ilvTtR~~~v~~~~ 330 (965)
.+..++-|+++|..-.-. ..+. ..+...+... ..+..+|+||.....+...
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 224678999999986522 1111 1223333322 2345899999988776654
No 346
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.87 E-value=0.047 Score=58.06 Aligned_cols=84 Identities=20% Similarity=0.163 Sum_probs=49.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHH
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSAS-----NFGEFQSLMQHIQ 278 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~ 278 (965)
.-+++-|+|..|+||||||-.+... ....-..++||+....+++.. ++.++.... .....++......
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 4569999999999999999888875 333345688999988777644 333332210 1123344455555
Q ss_pred HHhC-CceEEEEEeCCC
Q 002115 279 ECVE-GKKFLLVLDDLW 294 (965)
Q Consensus 279 ~~l~-~kr~LlVlDdv~ 294 (965)
+.++ +..-++|+|.|-
T Consensus 125 ~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHTTSESEEEEE-CT
T ss_pred HHhhcccccEEEEecCc
Confidence 5554 344578888874
No 347
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.87 E-value=0.17 Score=51.98 Aligned_cols=48 Identities=15% Similarity=0.134 Sum_probs=31.3
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHH
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAI 256 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 256 (965)
-.++.|.|.+|.||||+|.++.... .+.. ..++|++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 4599999999999999986655431 1222 3456776433 455666665
No 348
>PRK10867 signal recognition particle protein; Provisional
Probab=94.87 E-value=0.11 Score=58.03 Aligned_cols=25 Identities=40% Similarity=0.523 Sum_probs=21.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+.+|.++|.+|+||||.|..++..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999987766653
No 349
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.84 E-value=0.052 Score=50.23 Aligned_cols=44 Identities=32% Similarity=0.363 Sum_probs=32.0
Q ss_pred EEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCC
Q 002115 207 IISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGS 263 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 263 (965)
+|.|-|.+|.||||+|+.+.++-..+ .| +.-.+.++|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCC
Confidence 68999999999999999999873322 12 2235678888776543
No 350
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.84 E-value=0.052 Score=53.75 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=42.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHH--hcCCCCCCCCHHHHHHHHHHHh
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIES--LTGSASNFGEFQSLMQHIQECV 281 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~--l~~~~~~~~~~~~l~~~l~~~l 281 (965)
+..+|+|.|.+|+||||+|+.++.. ++..+ .+-++...-+. ..-.....+. ..-..+..-+.+-+.+.|...+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~--~~~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~ 81 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQ--LGVEK--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLK 81 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH--hCcCc--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHHH
Confidence 5679999999999999999999976 43331 11111111010 0000000001 1112334456777777888877
Q ss_pred CCce
Q 002115 282 EGKK 285 (965)
Q Consensus 282 ~~kr 285 (965)
.+++
T Consensus 82 ~g~~ 85 (218)
T COG0572 82 QGKP 85 (218)
T ss_pred cCCc
Confidence 7776
No 351
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.84 E-value=0.17 Score=50.26 Aligned_cols=45 Identities=24% Similarity=0.175 Sum_probs=30.0
Q ss_pred EEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHH
Q 002115 207 IISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARA 255 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 255 (965)
++.|.|.+|+|||++|.++....- + .=..++|++... +...+.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~-~-~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL-A-RGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-H-CCCcEEEEECCC--CHHHHHHH
Confidence 367999999999999988766521 1 113577887654 34444443
No 352
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.83 E-value=0.098 Score=60.84 Aligned_cols=134 Identities=14% Similarity=0.215 Sum_probs=76.2
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHH
Q 002115 177 ESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAI 256 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 256 (965)
...++|+...++++.+.+..... ...-|.|+|..|+|||++|+.+++... ..-...+.|++..-.+ ..+.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~--~~~e-- 255 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE--SLAE-- 255 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh--HHHH--
Confidence 35689999999999998876443 334788999999999999999987522 1112344555554321 2222
Q ss_pred HHHhcCCCCCC-CC-HHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC-----------CCcEEEEeecc
Q 002115 257 IESLTGSASNF-GE-FQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL-----------HESKILITTRK 323 (965)
Q Consensus 257 ~~~l~~~~~~~-~~-~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 323 (965)
..+.+...+. .. .......+. ..+ .=.|+||++..-.......+...+..+. ...+||.||..
T Consensus 256 -~~lfG~~~g~~~ga~~~~~g~~~--~a~-gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 256 -SELFGHVKGAFTGAISNRSGKFE--LAD-GGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred -HHhcCccccccCCCcccCCcchh--hcC-CCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 1222211100 00 000000111 112 2246899998765556666777665432 24588888864
Q ss_pred h
Q 002115 324 E 324 (965)
Q Consensus 324 ~ 324 (965)
.
T Consensus 332 ~ 332 (509)
T PRK05022 332 D 332 (509)
T ss_pred C
Confidence 3
No 353
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.82 E-value=0.16 Score=48.71 Aligned_cols=118 Identities=20% Similarity=0.135 Sum_probs=62.7
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceE--EEEcCCCCCHHHHHHHHHHHh---cCC----CCCC-CC---HHH
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRI--WVCVSEPFDEFRIARAIIESL---TGS----ASNF-GE---FQS 272 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~--wv~vs~~~~~~~~~~~i~~~l---~~~----~~~~-~~---~~~ 272 (965)
..|-|++..|.||||.|-...-.. ....+...+ |+.-........++....-.+ +.. ..+. .+ ..+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRA-LGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 578888889999999996555431 111222211 333332334444444320000 000 0000 01 122
Q ss_pred HHHHHHHHhCCce-EEEEEeCCCc---chhhchHhHHhhhcCCCCCcEEEEeecch
Q 002115 273 LMQHIQECVEGKK-FLLVLDDLWN---EVYYKWEPFYKCLKNGLHESKILITTRKE 324 (965)
Q Consensus 273 l~~~l~~~l~~kr-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 324 (965)
.....++.+...+ =+||||.+-. ...-+.+.+...+.....+..||+|-|+.
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2333444454444 4999999832 12334567777777777788999999975
No 354
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.80 E-value=0.057 Score=54.12 Aligned_cols=119 Identities=15% Similarity=0.118 Sum_probs=60.2
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCC-------CHHHHHHHH
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFG-------EFQSLMQHI 277 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-------~~~~l~~~l 277 (965)
.+++.|.|..|.||||+.+.+..-... . ....+|.+.. .. -.+...|...++....... +..++...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~l-a--~~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIM-A--QIGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-H--HcCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 368999999999999999988753211 1 1112222111 00 1122233322222211111 111221111
Q ss_pred HHHhCCceEEEEEeCCCcch-hhc----hHhHHhhhcCCCCCcEEEEeecchHHHhhcCC
Q 002115 278 QECVEGKKFLLVLDDLWNEV-YYK----WEPFYKCLKNGLHESKILITTRKEIVARCMRS 332 (965)
Q Consensus 278 ~~~l~~kr~LlVlDdv~~~~-~~~----~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~ 332 (965)
. +..++-|+++|...... ..+ ...+...+.. .|+.+|++|....++..+..
T Consensus 104 ~--~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 D--YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred H--hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 1 23567899999974311 111 1123333333 37899999999888776543
No 355
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.33 Score=56.51 Aligned_cols=133 Identities=15% Similarity=0.130 Sum_probs=74.3
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVE 282 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 282 (965)
...+.+.++|++|.|||+||+++++. .+.+|-.+.+- .++....+ .....+...+....+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~--~~~~fi~v~~~-------------~l~sk~vG-----esek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALE--SRSRFISVKGS-------------ELLSKWVG-----ESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhh--CCCeEEEeeCH-------------HHhccccc-----hHHHHHHHHHHHHHc
Confidence 45668999999999999999999985 44444222211 11111100 111222233333345
Q ss_pred CceEEEEEeCCCcc-----h------hhchHhHHhhhcCCC--CCcEEEEeecch-HHHhhc----CCcceEeCCCCChH
Q 002115 283 GKKFLLVLDDLWNE-----V------YYKWEPFYKCLKNGL--HESKILITTRKE-IVARCM----RSTNVIYVNVLSEI 344 (965)
Q Consensus 283 ~kr~LlVlDdv~~~-----~------~~~~~~l~~~l~~~~--~gs~ilvTtR~~-~v~~~~----~~~~~~~l~~L~~~ 344 (965)
..+..|.+|.+..- . ......+...+.... .+..||-||-.. .+-..+ .-...+.+.+-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 78899999998431 0 122333444443222 333344444333 222211 11457888888999
Q ss_pred HHHHHHHHHhc
Q 002115 345 ECWSVFEQLAF 355 (965)
Q Consensus 345 ~~~~lf~~~~~ 355 (965)
+..+.|+.+.-
T Consensus 414 ~r~~i~~~~~~ 424 (494)
T COG0464 414 ERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHhc
Confidence 99999998874
No 356
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.76 E-value=0.073 Score=58.26 Aligned_cols=81 Identities=23% Similarity=0.295 Sum_probs=50.7
Q ss_pred CccccchHHHHHHHHHHhcC--------CCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccc---cceEEEEcC-C
Q 002115 178 SEIFGREEEKNELVNRLLCE--------SSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNF---EKRIWVCVS-E 245 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs-~ 245 (965)
..++|.++.++.+..++... .....-..+.|.++|++|+||||+|+.+... +...| +...|...+ .
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCcc
Confidence 46899999999998887531 0001112467899999999999999999876 33333 332222221 1
Q ss_pred CCCHHHHHHHHHHHh
Q 002115 246 PFDEFRIARAIIESL 260 (965)
Q Consensus 246 ~~~~~~~~~~i~~~l 260 (965)
..+...+.+.+.+..
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235566666665544
No 357
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.75 E-value=0.085 Score=51.44 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999986
No 358
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.75 E-value=0.025 Score=57.32 Aligned_cols=25 Identities=44% Similarity=0.678 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+..+|+|+|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999875
No 359
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.73 E-value=0.19 Score=51.29 Aligned_cols=119 Identities=16% Similarity=0.073 Sum_probs=66.3
Q ss_pred EEEEEEecCCChHHHHHHHHHcccc-ccc---c-------c---cceEEEEc----CC--CCCH----------------
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDG-VKR---N-------F---EKRIWVCV----SE--PFDE---------------- 249 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~-~~~---~-------F---~~~~wv~v----s~--~~~~---------------- 249 (965)
..++|+|+.|.|||||.+.+..-.+ .++ . + ..+.||.= .. +.++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 5999999999999999999998311 000 0 1 13445531 00 1111
Q ss_pred ------HHHHHHHHHHhcCCC-----CCCCCHHHHHH-HHHHHhCCceEEEEEeCCC----cchhhchHhHHhhhcCCCC
Q 002115 250 ------FRIARAIIESLTGSA-----SNFGEFQSLMQ-HIQECVEGKKFLLVLDDLW----NEVYYKWEPFYKCLKNGLH 313 (965)
Q Consensus 250 ------~~~~~~i~~~l~~~~-----~~~~~~~~l~~-~l~~~l~~kr~LlVlDdv~----~~~~~~~~~l~~~l~~~~~ 313 (965)
++...+.++.++... -..-+-.+.++ .+.+.|..++=|+|||.-- .......-++...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 233444445444321 11222333333 4566778899999999743 22233333444444444
Q ss_pred CcEEEEeecchHH
Q 002115 314 ESKILITTRKEIV 326 (965)
Q Consensus 314 gs~ilvTtR~~~v 326 (965)
|..||++|.+-..
T Consensus 189 g~tIl~vtHDL~~ 201 (254)
T COG1121 189 GKTVLMVTHDLGL 201 (254)
T ss_pred CCEEEEEeCCcHH
Confidence 7889999987543
No 360
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.72 E-value=0.022 Score=45.75 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+|.|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998875
No 361
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.70 E-value=0.034 Score=56.64 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.|.|+|++|+||||+|+.+.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999865
No 362
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.68 E-value=0.28 Score=53.16 Aligned_cols=91 Identities=15% Similarity=0.017 Sum_probs=53.4
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCC-CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPF-DEFRIARAIIESLTGSASNFGEFQSLMQHIQECV 281 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l 281 (965)
.+.+++.++|+.|+||||++..+......++ ..+.+|+..... ...+-++...+.++.......+..++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 3568999999999999999988886522121 245566664322 2234455555555433222345555655554432
Q ss_pred C-CceEEEEEeCCCc
Q 002115 282 E-GKKFLLVLDDLWN 295 (965)
Q Consensus 282 ~-~kr~LlVlDdv~~ 295 (965)
. +..=+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 3445788887744
No 363
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.67 E-value=0.77 Score=48.86 Aligned_cols=157 Identities=11% Similarity=0.050 Sum_probs=89.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccc---c---cc--ccccceEEEEc-CCCCCHHHHHHHHHHHhcCCCCCCCCHHHHH
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNND---G---VK--RNFEKRIWVCV-SEPFDEFRIARAIIESLTGSASNFGEFQSLM 274 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~---~---~~--~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~ 274 (965)
-..+..++|..|.||+++|..+.+.- . +. .|=+...++.. +.....+++. ++.+.+.-..
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~---------- 85 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS---------- 85 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC----------
Confidence 34577799999999999998887641 0 01 11112223321 1112222211 2222221110
Q ss_pred HHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecc-hHHHh-hcCCcceEeCCCCChHHHHHHHHH
Q 002115 275 QHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRK-EIVAR-CMRSTNVIYVNVLSEIECWSVFEQ 352 (965)
Q Consensus 275 ~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~ 352 (965)
.-.+.+=++|+|++...+......+...+-.-..++.+|++|.+ ..+.. ....+..+++.++++++..+.+..
T Consensus 86 -----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 86 -----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 00147778999998776666777888888777777777766643 33332 234478999999999999887765
Q ss_pred HhccCCCccchhHHHHHHHHHHHHcCCChHhHHH
Q 002115 353 LAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKT 386 (965)
Q Consensus 353 ~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~ 386 (965)
.. . + ++.+..++...+|.=-|+..
T Consensus 161 ~~---~----~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 161 KN---K----E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred cC---C----C---hhHHHHHHHHcCCHHHHHHH
Confidence 31 1 1 12255566666663344444
No 364
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.65 E-value=0.14 Score=55.43 Aligned_cols=56 Identities=21% Similarity=0.221 Sum_probs=40.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccc----cccceEEEEcCCCCCHHHHHHHHHHHh
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKR----NFEKRIWVCVSEPFDEFRIARAIIESL 260 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l 260 (965)
.-.++-|+|.+|+||||++.+++-...... .=..++||+....++++++.+ +++.+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHc
Confidence 457999999999999999988875522210 012688999998888877554 44444
No 365
>PRK06547 hypothetical protein; Provisional
Probab=94.64 E-value=0.044 Score=53.20 Aligned_cols=26 Identities=35% Similarity=0.346 Sum_probs=23.2
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
....+|.|.|.+|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36779999999999999999999865
No 366
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.64 E-value=0.022 Score=59.86 Aligned_cols=96 Identities=28% Similarity=0.294 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHH-hcCCCC
Q 002115 187 KNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIES-LTGSAS 265 (965)
Q Consensus 187 ~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~~~~~ 265 (965)
...+++.+... -+-|.++|..|+|||++++....... ...| ...-++.|...+...+++ ++++ +.....
T Consensus 22 ~~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q~-~ie~~l~k~~~ 91 (272)
T PF12775_consen 22 YSYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQK-IIESKLEKRRG 91 (272)
T ss_dssp HHHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHHH-CCCTTECECTT
T ss_pred HHHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHHH-HHhhcEEcCCC
Confidence 45566666543 23678999999999999999886411 1112 233455555444443332 2222 111000
Q ss_pred CCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchH
Q 002115 266 NFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWE 302 (965)
Q Consensus 266 ~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~ 302 (965)
. ...--.+|+.++.+||+--...+.|.
T Consensus 92 ~----------~~gP~~~k~lv~fiDDlN~p~~d~yg 118 (272)
T PF12775_consen 92 R----------VYGPPGGKKLVLFIDDLNMPQPDKYG 118 (272)
T ss_dssp E----------EEEEESSSEEEEEEETTT-S---TTS
T ss_pred C----------CCCCCCCcEEEEEecccCCCCCCCCC
Confidence 0 00001478999999999654444443
No 367
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.59 E-value=0.23 Score=59.27 Aligned_cols=156 Identities=17% Similarity=0.170 Sum_probs=80.4
Q ss_pred ccccchHHHHHHHHHHh---cCCC---CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHH
Q 002115 179 EIFGREEEKNELVNRLL---CESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRI 252 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 252 (965)
++.|.+...+++.+.+. .... -+..-.+-|.|+|.+|.||||+|+.+.+. ....| +.++.++ +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------h
Confidence 46777766555554432 2110 00112344999999999999999999876 33333 2222221 1
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcch----------hhchHhHHhh----hcC--CCCCcE
Q 002115 253 ARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEV----------YYKWEPFYKC----LKN--GLHESK 316 (965)
Q Consensus 253 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~l~~~----l~~--~~~gs~ 316 (965)
. ....+ .....+...+.......+.+|++|+++.-. ...++..... +.. ...+.-
T Consensus 222 ~----~~~~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 222 V----EMFVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred H----Hhhhc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 1 11111 111223333333334567899999985521 1112222222 221 123445
Q ss_pred EEEeecchHHHh-hc-C---CcceEeCCCCChHHHHHHHHHHh
Q 002115 317 ILITTRKEIVAR-CM-R---STNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 317 ilvTtR~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
||.||....... .. . -.+.+.+..-+.++-.++++.+.
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 555776544322 11 1 24677788888888888887765
No 368
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.58 E-value=0.027 Score=56.92 Aligned_cols=25 Identities=40% Similarity=0.510 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|+|+|.+|+||||||+.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999865
No 369
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.56 E-value=0.13 Score=50.55 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 49999999999999999999864
No 370
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.53 E-value=0.11 Score=49.87 Aligned_cols=116 Identities=17% Similarity=0.085 Sum_probs=61.2
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCC--CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCC
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPF--DEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEG 283 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 283 (965)
.+++|+|..|.|||||++.+.... ......+++.-.... ...... ..+.-.. ..+.-+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~~----~~i~~~~-qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEELR----RRIGYVP-QLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHHH----hceEEEe-eCCHHHHHHHHHHHHHhc
Confidence 599999999999999999998752 234455555322111 111111 1111000 011122223335555556
Q ss_pred ceEEEEEeCCCcc-hhhchHhHHhhhcCC-CCCcEEEEeecchHHHhh
Q 002115 284 KKFLLVLDDLWNE-VYYKWEPFYKCLKNG-LHESKILITTRKEIVARC 329 (965)
Q Consensus 284 kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~ 329 (965)
.+-++++|+.-.. +......+...+... ..+..++++|........
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6788999987531 122333343333321 124678888877655543
No 371
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.52 E-value=0.2 Score=50.69 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=21.7
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-.+++|+|..|.|||||++.+...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 349999999999999999999875
No 372
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.51 E-value=0.053 Score=65.59 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+..++.|+|+.|.||||+.+.+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 3469999999999999999988754
No 373
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.49 E-value=0.086 Score=53.85 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHH-hhcccCcHHHHHHHHHHHHhhhchhhHHHHHH
Q 002115 10 LLQQLTAMAAAETKEQVKLVTGVGKEVKKLNSNLRAIQAVLHDA-EKRQVKEETVRLWLDQLRDACYDIEDVLGEWN 85 (965)
Q Consensus 10 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a-~~~~~~~~~~~~wl~~l~~~~yd~ed~ld~~~ 85 (965)
.+..++.+|-++.......+..++.+++-++.+++.+|.||+.. +............+.++.+.||++|+++|.+.
T Consensus 297 yVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 297 YVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 35556667766666666667778999999999999999999987 44343444588899999999999999999873
No 374
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.49 E-value=0.17 Score=53.15 Aligned_cols=89 Identities=18% Similarity=0.186 Sum_probs=47.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHH--HHHHHHHHHhcCCC---CCCCCH-HHHHHHH
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEF--RIARAIIESLTGSA---SNFGEF-QSLMQHI 277 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~---~~~~~~-~~l~~~l 277 (965)
+.+++.++|.+|+||||++..++.. ....-..+++++... +... +-++...+..+... ....+. ......+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 5689999999999999999888765 222222455555432 3222 22333444443211 111222 2222334
Q ss_pred HHHhCCceEEEEEeCCCc
Q 002115 278 QECVEGKKFLLVLDDLWN 295 (965)
Q Consensus 278 ~~~l~~kr~LlVlDdv~~ 295 (965)
.....+..=++++|-.-.
T Consensus 148 ~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHCCCCEEEEeCCCC
Confidence 443334445788887643
No 375
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.47 E-value=0.034 Score=49.92 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=19.0
Q ss_pred EEEEecCCChHHHHHHHHHcccccccccc
Q 002115 208 ISLVGMGGIGKTTLAQFAYNNDGVKRNFE 236 (965)
Q Consensus 208 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 236 (965)
|.|+|.+|+||||+|+.+... +...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCcee
Confidence 679999999999999999987 666664
No 376
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.47 E-value=0.88 Score=47.08 Aligned_cols=123 Identities=14% Similarity=0.188 Sum_probs=77.6
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHH
Q 002115 177 ESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAI 256 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 256 (965)
.+.|+|-... .+++.++.... ..-+.+.++|+.|+|||+-++.+++. ....+.+..+..+....+...+
T Consensus 71 ~~~~l~tkt~-r~~~~~~~~A~----k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i 139 (297)
T COG2842 71 APDFLETKTV-RRIFFRTRPAS----KTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILII 139 (297)
T ss_pred cccccccchh-HhHhhhhhhhh----hcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHH
Confidence 3456665442 23334443222 12338899999999999999999975 2223344567777777777777
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC
Q 002115 257 IESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL 312 (965)
Q Consensus 257 ~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 312 (965)
......... .........+...+.+..-++++|....-.....+.++......+
T Consensus 140 ~~~~~~~~~--~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~G 193 (297)
T COG2842 140 CAAAFGATD--GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTG 193 (297)
T ss_pred HHHHhcccc--hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhC
Confidence 666554432 233445555566668888899999987765666777766554443
No 377
>PRK06762 hypothetical protein; Provisional
Probab=94.43 E-value=0.03 Score=54.44 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.6
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+.+|.|+|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999865
No 378
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.54 Score=46.60 Aligned_cols=68 Identities=12% Similarity=0.044 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCcc-hhhchHhHHhhhcC-CCCCcEEEEeecchHHHhhcCCcceEeC
Q 002115 271 QSLMQHIQECVEGKKFLLVLDDLWNE-VYYKWEPFYKCLKN-GLHESKILITTRKEIVARCMRSTNVIYV 338 (965)
Q Consensus 271 ~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~~~~~~~~~~l 338 (965)
+.....+.+.+-=++=+.|||..++- +.++.+.+...+.. ...|+-+++.|..+.+.....++.++-+
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl 218 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVL 218 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEE
Confidence 33344455555556778999988652 22333333333332 2346778888888888887765554443
No 379
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.38 E-value=0.55 Score=47.43 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||++.+..-
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999999864
No 380
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.35 E-value=0.23 Score=49.91 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.7
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 349999999999999999999875
No 381
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.33 E-value=0.084 Score=51.75 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|.|+|.+|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3459999999999999999999875
No 382
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.31 E-value=0.075 Score=52.16 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 383
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.31 E-value=0.089 Score=49.91 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998875
No 384
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.20 E-value=0.022 Score=33.81 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=13.6
Q ss_pred CCcEEeccCcccccccCccccC
Q 002115 646 NLEHLDISYCRNLRELPQGIGK 667 (965)
Q Consensus 646 ~L~~LdL~~~~~l~~lP~~i~~ 667 (965)
+|++||+++|. ++.+|.+|++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 46777777775 5567766544
No 385
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.20 E-value=0.07 Score=48.84 Aligned_cols=41 Identities=22% Similarity=0.119 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccc
Q 002115 185 EEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNND 229 (965)
Q Consensus 185 ~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 229 (965)
++.+++.+.|...- ..-.+|.+.|.-|.||||+++.+++..
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44555555554321 133499999999999999999999863
No 386
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.20 E-value=0.09 Score=55.03 Aligned_cols=23 Identities=35% Similarity=0.271 Sum_probs=18.3
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..|.|.|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 36889999999999999999875
No 387
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.18 E-value=0.39 Score=47.34 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.3
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||.+.+..-
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999875
No 388
>PRK06217 hypothetical protein; Validated
Probab=94.17 E-value=0.14 Score=50.55 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.8
Q ss_pred EEEEEecCCChHHHHHHHHHccc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNND 229 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~~ 229 (965)
.|.|.|.+|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999763
No 389
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.17 E-value=0.027 Score=49.91 Aligned_cols=21 Identities=43% Similarity=0.524 Sum_probs=19.1
Q ss_pred EEEEecCCChHHHHHHHHHcc
Q 002115 208 ISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 208 v~I~G~gGiGKTtLa~~v~~~ 228 (965)
|.|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998876
No 390
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.14 E-value=0.069 Score=48.58 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=40.5
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCC
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEG 283 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 283 (965)
..-|.|.|.+|+||||+|.++..... .-|+++|+-.....+...--++. .+..-+.+.+.+.|...+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~vkEn~l~~gyDE~y---~c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDLVKENNLYEGYDEEY---KCHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC-------CceEehhhHHhhhcchhcccccc---cCccccHHHHHHHHHHHHhc
Confidence 34688999999999999999985422 23677765322222222111111 12334566677777666654
No 391
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.13 E-value=0.28 Score=49.07 Aligned_cols=23 Identities=26% Similarity=0.138 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
++++|+|..|.|||||.+.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 69999999999999999988754
No 392
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.09 E-value=0.12 Score=51.96 Aligned_cols=85 Identities=24% Similarity=0.259 Sum_probs=50.5
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCC-CCHHHHHHHHHHHhcCC-------CCCCCCHHH-----
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEP-FDEFRIARAIIESLTGS-------ASNFGEFQS----- 272 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 272 (965)
..++|+|.+|+|||+|++.+.+.. .-+..+++.+++. ....++.+++...-... ..+.....+
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 478999999999999999998873 2234478888765 34455555553321110 111111111
Q ss_pred HHHHHHHHh--CCceEEEEEeCCC
Q 002115 273 LMQHIQECV--EGKKFLLVLDDLW 294 (965)
Q Consensus 273 l~~~l~~~l--~~kr~LlVlDdv~ 294 (965)
..-.+.+++ +++..|+++||+-
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHH
T ss_pred cchhhhHHHhhcCCceeehhhhhH
Confidence 111122333 6999999999983
No 393
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.06 E-value=0.11 Score=52.78 Aligned_cols=65 Identities=25% Similarity=0.250 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHH
Q 002115 186 EKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIAR 254 (965)
Q Consensus 186 ~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 254 (965)
+..++++.+.... .+..+|+|.|.+|+||+||...+...-+-+++=-.++=|+-|.+++--.++-
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccc
Confidence 5566777776542 3678999999999999999988877633333323444555555555444433
No 394
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.00 E-value=0.094 Score=46.96 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=34.7
Q ss_pred ccccchHHHHHHHHHHhcCCC-CCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 179 EIFGREEEKNELVNRLLCESS-KEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.++|..-..+.|++.+..--. ....++-|++.+|..|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 467766655555555532111 13457789999999999999998887765
No 395
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.00 E-value=0.32 Score=50.33 Aligned_cols=49 Identities=24% Similarity=0.337 Sum_probs=34.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHH
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAI 256 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 256 (965)
.-.++.|.|.+|+|||++|.++.... . ..-..++||+... ++..+.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 55799999999999999998765431 1 2235678888765 455555553
No 396
>PRK04040 adenylate kinase; Provisional
Probab=93.98 E-value=0.045 Score=54.07 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.6
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..+|.|+|++|+||||+++.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 358999999999999999999875
No 397
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.97 E-value=0.45 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.6
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-.+++|.|..|.|||||.+.+..-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999874
No 398
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.97 E-value=0.18 Score=55.80 Aligned_cols=87 Identities=17% Similarity=0.173 Sum_probs=52.0
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCC-HHHHHHHHHHHhcCC-------CCCCCCHHH----
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFD-EFRIARAIIESLTGS-------ASNFGEFQS---- 272 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~---- 272 (965)
-..++|+|..|+|||||++.+.+.. ..+.++.+-+++... ..++...++..-... ..+.....+
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 3479999999999999999998641 224566666766543 344555544331111 111111111
Q ss_pred -HHHHHHHHh--CCceEEEEEeCCCc
Q 002115 273 -LMQHIQECV--EGKKFLLVLDDLWN 295 (965)
Q Consensus 273 -l~~~l~~~l--~~kr~LlVlDdv~~ 295 (965)
..-.+.+++ ++++.|+++||+-.
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 112244444 58999999999944
No 399
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.97 E-value=0.23 Score=54.85 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYN 227 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~ 227 (965)
.+++|+|+.|.||||||+.+..
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 3899999999999999999876
No 400
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.94 E-value=0.23 Score=58.28 Aligned_cols=115 Identities=13% Similarity=0.096 Sum_probs=61.6
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccc---cceEEEEcCCCCCHHHHHHHHHHHhcCCCCCC---CCHHHHHHHHH
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNF---EKRIWVCVSEPFDEFRIARAIIESLTGSASNF---GEFQSLMQHIQ 278 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~l~~~l~ 278 (965)
.++..|.|.+|.||||++..+... +.... ...+.+..........+...+...+....... ..+.....-++
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~--l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiH 244 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAA--LIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLH 244 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH--HHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHH
Confidence 348999999999999999888764 21111 24566666655555555555443322110000 00000112222
Q ss_pred HHhC----C--------ce---EEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecch
Q 002115 279 ECVE----G--------KK---FLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKE 324 (965)
Q Consensus 279 ~~l~----~--------kr---~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 324 (965)
+.|. + .+ =+||+|.+.-.+......+..+++ +++|+|+---..
T Consensus 245 rlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~ 302 (615)
T PRK10875 245 RLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRD 302 (615)
T ss_pred HHhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchh
Confidence 2221 1 11 289999986655444555555555 457888765443
No 401
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.90 E-value=0.019 Score=57.63 Aligned_cols=82 Identities=21% Similarity=0.217 Sum_probs=53.4
Q ss_pred ccCCCcEEEeCCccCccccchhhhccCCCcEEeccCc--ccccccCccccCCCCccEeecCCCcccccccccC---CCcc
Q 002115 619 NLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYC--RNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGI---GELI 693 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~--~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i---~~l~ 693 (965)
.+..|.+|++.++. ++.+-. +-.|++|++|+++.| .....++.-..++++|++|++++|.. .. ++.+ ..+.
T Consensus 41 ~~~~le~ls~~n~g-ltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki-~~-lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVG-LTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI-KD-LSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccc-eeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc-cc-ccccchhhhhc
Confidence 45567777777766 444433 556889999999999 54455666667789999999999942 22 3333 3444
Q ss_pred cccccCceEec
Q 002115 694 RLRIVKEFVVG 704 (965)
Q Consensus 694 ~L~~L~l~~~~ 704 (965)
+|..|.++++.
T Consensus 117 nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 117 NLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCC
Confidence 45555555443
No 402
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.87 E-value=0.36 Score=50.53 Aligned_cols=125 Identities=14% Similarity=0.100 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEE---cCCCCCHHHHHHHHHHHhcC
Q 002115 186 EKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVC---VSEPFDEFRIARAIIESLTG 262 (965)
Q Consensus 186 ~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~~~i~~~l~~ 262 (965)
..+.++..+... ....-++|+|..|.|||||.+.+... +. .....+++. +...... .++......
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g~~v~~~d~~----~ei~~~~~~ 164 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRGKKVGIVDER----SEIAGCVNG 164 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECCEEeecchhH----HHHHHHhcc
Confidence 345555555532 23468999999999999999999975 22 223344432 1111111 223222211
Q ss_pred C--CC-----C-CCCHHHHHHHHHHHh-CCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchHHHh
Q 002115 263 S--AS-----N-FGEFQSLMQHIQECV-EGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEIVAR 328 (965)
Q Consensus 263 ~--~~-----~-~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 328 (965)
- .. + ........ .+...+ .-.+=++++|.+-.. +.+..+...+. .|..||+||....+..
T Consensus 165 ~~q~~~~~r~~v~~~~~k~~-~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 165 VPQHDVGIRTDVLDGCPKAE-GMMMLIRSMSPDVIVVDEIGRE--EDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccccccccccchHHH-HHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 1 00 0 01111111 122222 257789999998543 34555555543 4678999998766544
No 403
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.86 E-value=0.7 Score=46.42 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.7
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 349999999999999999999875
No 404
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.85 E-value=0.48 Score=49.01 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||.+.+..-
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 49999999999999999999874
No 405
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.84 E-value=0.56 Score=47.93 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||++.+...
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999999864
No 406
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.80 E-value=0.05 Score=54.09 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+..+|.|+|.+|+||||+|+.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999854
No 407
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.80 E-value=0.28 Score=54.64 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=49.1
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCC------CCCCCCHH-----HH
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGS------ASNFGEFQ-----SL 273 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~------~~~~~~~~-----~l 273 (965)
-..++|+|..|+|||||++.+.... .....++++.-....+...+....+...... ..+..... ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 3489999999999999999988642 2222344443323445554444443332111 11111111 11
Q ss_pred HHHHHHHh--CCceEEEEEeCCCc
Q 002115 274 MQHIQECV--EGKKFLLVLDDLWN 295 (965)
Q Consensus 274 ~~~l~~~l--~~kr~LlVlDdv~~ 295 (965)
.-.+.+++ +++..|+++||+-.
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHH
Confidence 12233444 48999999999843
No 408
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.80 E-value=0.37 Score=47.98 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.5
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-.+++|+|..|.|||||++.+...
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 359999999999999999999863
No 409
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.73 E-value=0.058 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=21.6
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++.|+|.+|+||||+.+.+-..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 679999999999999999888765
No 410
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.73 E-value=0.27 Score=54.08 Aligned_cols=40 Identities=28% Similarity=0.292 Sum_probs=29.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCC
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSE 245 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 245 (965)
.-.++.|.|.+|+|||||+.+++.. ....-..++||+..+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EE 120 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE 120 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCc
Confidence 3469999999999999999988865 222224577887654
No 411
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.72 E-value=0.26 Score=53.98 Aligned_cols=77 Identities=18% Similarity=0.218 Sum_probs=46.3
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHccccc----cccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNNDGV----KRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQ 278 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~ 278 (965)
..++=+.|+|..|.|||.|.-.+|+...+ +-||. ....++-+.+.........+. .+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~l~----~va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDPLP----QVA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCccHH----HHH
Confidence 35678999999999999999999987332 33442 223333333222111222222 333
Q ss_pred HHhCCceEEEEEeCCCcch
Q 002115 279 ECVEGKKFLLVLDDLWNEV 297 (965)
Q Consensus 279 ~~l~~kr~LlVlDdv~~~~ 297 (965)
+.+.++..||.||.+.-.+
T Consensus 122 ~~l~~~~~lLcfDEF~V~D 140 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTD 140 (362)
T ss_pred HHHHhcCCEEEEeeeeccc
Confidence 4455667799999975543
No 412
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.70 E-value=0.2 Score=48.45 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.|.+.|.+|+||||+|+++...
T Consensus 3 LiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHH
Confidence 6778999999999999999875
No 413
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.66 E-value=0.17 Score=58.83 Aligned_cols=133 Identities=14% Similarity=0.106 Sum_probs=70.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
..++|....+.++++.+..... .-.-|.|+|..|.||+++|+.+..... ..-..-+.|+++.-. ...+..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~--r~~~pfv~inca~~~--~~~~e~-- 273 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRSP--RGKKPFLALNCASIP--DDVVES-- 273 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeccccCC--HHHHHH--
Confidence 4689999888888887754322 122477999999999999999875421 111223445544422 222222
Q ss_pred HHhcCCCCCC-CCHHH-HHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC-----------CCcEEEEeecch
Q 002115 258 ESLTGSASNF-GEFQS-LMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL-----------HESKILITTRKE 324 (965)
Q Consensus 258 ~~l~~~~~~~-~~~~~-l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 324 (965)
.+.+...+. ..... ....+. ....=.|+||++..-.......+...+..+. ...+||.||...
T Consensus 274 -elFG~~~~~~~~~~~~~~g~~e---~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 274 -ELFGHAPGAYPNALEGKKGFFE---QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred -HhcCCCCCCcCCcccCCCChhh---hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 222211100 00000 000011 1123357899998765555556666665431 134788877653
No 414
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.66 E-value=0.049 Score=53.14 Aligned_cols=24 Identities=42% Similarity=0.527 Sum_probs=22.1
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..+|+|-||-|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 458999999999999999999987
No 415
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.63 E-value=0.45 Score=56.69 Aligned_cols=87 Identities=17% Similarity=0.194 Sum_probs=47.1
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCC--HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFD--EFRIARAIIESLTGSASNFGEFQSLMQHIQECVE 282 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 282 (965)
.+|+.++|+.|+||||.+.++............+..+... .+. ..+-++...+.++.......+..++...+.+ ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hc
Confidence 4799999999999999998888652111111234444432 222 3334445555554333222344445444443 33
Q ss_pred CceEEEEEeCCC
Q 002115 283 GKKFLLVLDDLW 294 (965)
Q Consensus 283 ~kr~LlVlDdv~ 294 (965)
++. +|++|=.-
T Consensus 263 ~~D-~VLIDTAG 273 (767)
T PRK14723 263 DKH-LVLIDTVG 273 (767)
T ss_pred CCC-EEEEeCCC
Confidence 333 66666654
No 416
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.62 E-value=0.32 Score=54.06 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+++++|..|+||||++..+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999877653
No 417
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.60 E-value=0.29 Score=51.27 Aligned_cols=87 Identities=16% Similarity=0.119 Sum_probs=48.1
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCC-----CC--CCCCHHHHHH
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGS-----AS--NFGEFQSLMQ 275 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----~~--~~~~~~~l~~ 275 (965)
.+..+|.|+|.+|+|||||+..+.+. .+... ..+.+ ..+..+..+ ...++..+.+ .. --.+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~--l~~~~-~~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR--LKDSV-PCAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--hccCC-CEEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 47889999999999999999999876 33333 22222 222222222 1223333221 10 0123334455
Q ss_pred HHHHHhCCceEEEEEeCCCc
Q 002115 276 HIQECVEGKKFLLVLDDLWN 295 (965)
Q Consensus 276 ~l~~~l~~kr~LlVlDdv~~ 295 (965)
.+.......-=++|++++-+
T Consensus 176 Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHhhcCCcEEEEECCCC
Confidence 55554444446778899854
No 418
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.60 E-value=0.13 Score=63.45 Aligned_cols=197 Identities=16% Similarity=0.157 Sum_probs=98.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccc---cceEEEEcCC----CCCHH--HHHHHHHHHhcCCCCCCCCHHHHH
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNF---EKRIWVCVSE----PFDEF--RIARAIIESLTGSASNFGEFQSLM 274 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~----~~~~~--~~~~~i~~~l~~~~~~~~~~~~l~ 274 (965)
...-+.|+|.+|.||||+.+.+.-.. ..+.+ +..+|+.+.. .-... .+..-+...+..... .....
T Consensus 221 ~~~~~~Ilg~pGsGKTtfl~~lA~~~-~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~----~~~~~ 295 (824)
T COG5635 221 KYAKLLILGAPGSGKTTFLQRLALWL-AQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI----AKQLI 295 (824)
T ss_pred hhhheeeecCCCCCceehHHHHHHHh-ccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC----cchhh
Confidence 34478999999999999998877541 12222 3344444321 01111 122222222222211 12222
Q ss_pred HHHHHHhCCceEEEEEeCCCcchhhc----hHhHHhhhcCCCCCcEEEEeecchHHHhhcCCcceEeCCCCChHHHHHHH
Q 002115 275 QHIQECVEGKKFLLVLDDLWNEVYYK----WEPFYKCLKNGLHESKILITTRKEIVARCMRSTNVIYVNVLSEIECWSVF 350 (965)
Q Consensus 275 ~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf 350 (965)
....++++..++++++|.+....... ...+.. +...-+.+.||+|+|....-........+++..+.++......
T Consensus 296 ~~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~-f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~ 374 (824)
T COG5635 296 EAHQELLKTGKLLLLLDGLDELEPKNQRALIREINK-FLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFI 374 (824)
T ss_pred HHHHHHHhccchhhHhhccchhhhhhHHHHHHHHHH-HhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHH
Confidence 33367788999999999986532211 111111 2222357899999997655444444455666666665544332
Q ss_pred H--------HHhccCCCcc---chhHHHHHHHHHHHHcCCChHhHHHHHHhhcCC-----CCHHHHHHHHhh
Q 002115 351 E--------QLAFFGRSME---ECEKLENMGRQIVRKCKGLPLAAKTIASLLQSR-----NTEKEWQNILES 406 (965)
Q Consensus 351 ~--------~~~~~~~~~~---~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~-----~~~~~w~~~l~~ 406 (965)
. ...++..... ....+..-...-++.....|+++.+.+..-... ...+-+...++.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~ 446 (824)
T COG5635 375 LYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDA 446 (824)
T ss_pred HHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHH
Confidence 2 1112211111 001111111223344478899998888554421 234556555554
No 419
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.53 E-value=0.2 Score=51.82 Aligned_cols=90 Identities=18% Similarity=0.195 Sum_probs=55.1
Q ss_pred EEEEEEecCCChHHHHHHHHHccccc--cccccceEEEEcCCCC-CHHHHHHHHHHHhcCC-------CCCCCCHHH---
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGV--KRNFEKRIWVCVSEPF-DEFRIARAIIESLTGS-------ASNFGEFQS--- 272 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 272 (965)
..++|.|-.|+|||+|+.++.+...+ +++-+.++++-+++.. ...++...+.+.=... ..+.....+
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 47899999999999999998876321 1234678888887764 4455555554431111 111111111
Q ss_pred --HHHHHHHHh---CCceEEEEEeCCCc
Q 002115 273 --LMQHIQECV---EGKKFLLVLDDLWN 295 (965)
Q Consensus 273 --l~~~l~~~l---~~kr~LlVlDdv~~ 295 (965)
..-.+.+++ .+++.|+++||+-+
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 122344454 27899999999854
No 420
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.52 E-value=0.78 Score=47.86 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=21.3
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||++.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 48999999999999999999885
No 421
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.52 E-value=0.11 Score=53.49 Aligned_cols=67 Identities=24% Similarity=0.219 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 187 KNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 187 ~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
-.+++..+... .++..||+|.|.||+||+||.-.+.....-+++=-.++=|+-|.+++--.++-+=+
T Consensus 37 a~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRi 103 (323)
T COG1703 37 ARELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRI 103 (323)
T ss_pred HHHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHh
Confidence 34555555443 34677999999999999999988877644445544566666777776655554433
No 422
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.48 E-value=0.27 Score=47.92 Aligned_cols=120 Identities=16% Similarity=0.045 Sum_probs=63.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceE--EEEcCCCCCHHHHHHHHH--HHh--cCC----C-CCCCC---
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRI--WVCVSEPFDEFRIARAII--ESL--TGS----A-SNFGE--- 269 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~--wv~vs~~~~~~~~~~~i~--~~l--~~~----~-~~~~~--- 269 (965)
....|-|+|..|-||||.|.-+.-.. ...-+...+ |+.-........+++.+- .-. +.. . ....+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra-~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA-VGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 34589999999999999996655431 111121111 222221234444443320 000 000 0 00011
Q ss_pred HHHHHHHHHHHhCC-ceEEEEEeCCCc---chhhchHhHHhhhcCCCCCcEEEEeecch
Q 002115 270 FQSLMQHIQECVEG-KKFLLVLDDLWN---EVYYKWEPFYKCLKNGLHESKILITTRKE 324 (965)
Q Consensus 270 ~~~l~~~l~~~l~~-kr~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 324 (965)
..+.....++.+.+ +-=+||||.+-. ...-+.+++...+.....+..||+|-|..
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11223334445544 445999999833 12335667888887777788999999975
No 423
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.45 E-value=0.3 Score=48.68 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=27.0
Q ss_pred EEEEEecCCChHHHHHHHHHccccccccc--------cceEEEEcCCC
Q 002115 207 IISLVGMGGIGKTTLAQFAYNNDGVKRNF--------EKRIWVCVSEP 246 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~ 246 (965)
++.|+|.+|+||||++..+....-....| ..++|++....
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 89999999999999998887653322222 25668877654
No 424
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.42 E-value=0.22 Score=54.55 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=59.8
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCce
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKK 285 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 285 (965)
..+.|.|..|.||||+.+.+.+. +..+...+++. +.++... ..... ..+-.......+.......++..++..+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEY--VHRNK-RSLINQREVGLDTLSFANALRAALREDP 196 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhh--hccCc-cceEEccccCCCCcCHHHHHHHhhccCC
Confidence 58999999999999999998875 43444455554 2222111 10000 0000000001112234555677788888
Q ss_pred EEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchHHH
Q 002115 286 FLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEIVA 327 (965)
Q Consensus 286 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 327 (965)
=.|++|.+.+. +.+...... ...|-.|+.|.....+.
T Consensus 197 d~i~vgEird~--~~~~~~l~a---a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 197 DVILIGEMRDL--ETVELALTA---AETGHLVFGTLHTNSAA 233 (343)
T ss_pred CEEEEeCCCCH--HHHHHHHHH---HHcCCcEEEEEcCCCHH
Confidence 89999999653 334332332 23344566666554433
No 425
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.42 E-value=0.098 Score=48.83 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=27.6
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCC
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSE 245 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 245 (965)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 489999999999999999999873 234555555666554
No 426
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.41 E-value=0.08 Score=50.97 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4569999999999999999999876
No 427
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.37 E-value=0.23 Score=51.99 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=29.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCC
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSE 245 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 245 (965)
.-.++.|.|.+|+||||+|.++.... .+ .=..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~-a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ-AS-RGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-Hh-CCCcEEEEEecC
Confidence 45799999999999999998875541 11 223677888764
No 428
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.36 E-value=0.27 Score=54.79 Aligned_cols=87 Identities=20% Similarity=0.275 Sum_probs=50.7
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCC-CCHHHHHHHHHHHhcCC-------CCCCCCHHHH---
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEP-FDEFRIARAIIESLTGS-------ASNFGEFQSL--- 273 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~l--- 273 (965)
-..++|+|..|+|||||++.+.+.. +.+..+++.+++. ..+.+++.+....=... ..+.......
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 3489999999999999999998752 3444566665543 34445455443210000 1111112221
Q ss_pred --HHHHHHHh--CCceEEEEEeCCCc
Q 002115 274 --MQHIQECV--EGKKFLLVLDDLWN 295 (965)
Q Consensus 274 --~~~l~~~l--~~kr~LlVlDdv~~ 295 (965)
.-.+.+++ ++++.||++||+-.
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 12244444 58999999999944
No 429
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.36 E-value=0.3 Score=54.69 Aligned_cols=90 Identities=24% Similarity=0.214 Sum_probs=53.8
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCC-CHHHHHHHHHHHhcCC-------CCCCCCHHH----
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPF-DEFRIARAIIESLTGS-------ASNFGEFQS---- 272 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 272 (965)
-..++|.|..|+|||||+.++...... ++=+.++++-+++.. .+.++...+...=... ..+.....+
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 347999999999999999988765221 111356777776544 4455666655431111 112222222
Q ss_pred -HHHHHHHHh---CCceEEEEEeCCCc
Q 002115 273 -LMQHIQECV---EGKKFLLVLDDLWN 295 (965)
Q Consensus 273 -l~~~l~~~l---~~kr~LlVlDdv~~ 295 (965)
..-.+.+++ ++++.||++|++-+
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHH
Confidence 122345555 68999999999943
No 430
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.34 E-value=0.15 Score=53.73 Aligned_cols=51 Identities=20% Similarity=0.187 Sum_probs=39.1
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
+.-+++.|+|.+|+|||++|.++... ...+...++||+..+ +...+.+...
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e--~~~~l~~~~~ 71 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEE--SPEELLENAR 71 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecC--CHHHHHHHHH
Confidence 45679999999999999999888876 445578899998876 3444444443
No 431
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.32 E-value=0.28 Score=55.05 Aligned_cols=90 Identities=22% Similarity=0.184 Sum_probs=55.7
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCC-CHHHHHHHHHHHhcCC-------CCCCCCHH-----
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPF-DEFRIARAIIESLTGS-------ASNFGEFQ----- 271 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 271 (965)
-..++|+|.+|+|||||+.++.+... +.+-+.++++-+++.. ...++...+...-... ..+.....
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 34799999999999999988887632 2245777888776543 4455555554432111 11111111
Q ss_pred HHHHHHHHHh---CCceEEEEEeCCCc
Q 002115 272 SLMQHIQECV---EGKKFLLVLDDLWN 295 (965)
Q Consensus 272 ~l~~~l~~~l---~~kr~LlVlDdv~~ 295 (965)
...-.+.+++ .+++.|+++|++-+
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchH
Confidence 1222344555 38999999999943
No 432
>PRK08149 ATP synthase SpaL; Validated
Probab=93.32 E-value=0.31 Score=54.14 Aligned_cols=87 Identities=16% Similarity=0.259 Sum_probs=50.8
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCC-CCCHHHHHHHHHHHhcCC-------CCCCCCHH-----
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSE-PFDEFRIARAIIESLTGS-------ASNFGEFQ----- 271 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 271 (965)
-..++|+|..|+|||||++.+++.. .-+..+...+.. ..+..++..+........ ..+.....
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 3489999999999999999998752 223333444433 234555555555543221 11111111
Q ss_pred HHHHHHHHHh--CCceEEEEEeCCCc
Q 002115 272 SLMQHIQECV--EGKKFLLVLDDLWN 295 (965)
Q Consensus 272 ~l~~~l~~~l--~~kr~LlVlDdv~~ 295 (965)
...-.+.+++ ++|+.||++||+-+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHH
Confidence 1222234444 58999999999944
No 433
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.31 E-value=0.0097 Score=69.38 Aligned_cols=135 Identities=21% Similarity=0.228 Sum_probs=71.0
Q ss_pred CCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecC-CCCCCCC-----CCCCCCCcceeeecCCCCceEeCccccCC
Q 002115 788 PPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFEC-RNCEHLP-----PLGKLPSIEVLEIYGVQSVKRVGNEFLGV 861 (965)
Q Consensus 788 ~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~-~~~~~lp-----~l~~L~~L~~L~L~~~~~l~~~~~~~~~~ 861 (965)
+++|+.|.+.++....+..-......+++|+.|++++| ......+ ....+++|+.|++..|..+...+-....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~- 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA- 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH-
Confidence 67777777777755442110123346777888887763 2222211 1445677777777776643332222111
Q ss_pred CCCCCCccccCCcccccccccccccccccCcccccccccccCcccceEeeccCccCcC--CCcCCCCCCCCCeEeEc
Q 002115 862 ESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKA--LPDRLLQKTTLQALTIG 936 (965)
Q Consensus 862 ~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--lp~~l~~l~~L~~L~l~ 936 (965)
..+|+|+.|.+.+|..++...+. .....+|+|+.|+|++|..+.. +.....++++|+.|.+.
T Consensus 266 ---------~~c~~L~~L~l~~c~~lt~~gl~----~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 266 ---------SRCPNLETLSLSNCSNLTDEGLV----SIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred ---------hhCCCcceEccCCCCccchhHHH----HHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 13677777777767654433221 2223567777777777776532 22223335555554433
No 434
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.31 E-value=0.051 Score=53.31 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 435
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.28 E-value=0.049 Score=53.89 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
||.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999865
No 436
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.27 E-value=0.32 Score=57.04 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=58.0
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccc----cceEEEEcCCCCCHHHHHHHHHHHhcCCC----------CCCCCHH
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNF----EKRIWVCVSEPFDEFRIARAIIESLTGSA----------SNFGEFQ 271 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----------~~~~~~~ 271 (965)
++..|.|.+|.||||++..+..- +.... ..++-+..........+...+......-. .....+.
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~--l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~~~~~~~~~~~a~TiH 238 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLA--LVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAAEALIAALPSEAVTIH 238 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH--HHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccchhhhhccccccchhh
Confidence 48999999999999999888754 21111 13455555544444444444433221100 0011111
Q ss_pred HHHHHHH-----HHhCCc---eEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecch
Q 002115 272 SLMQHIQ-----ECVEGK---KFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKE 324 (965)
Q Consensus 272 ~l~~~l~-----~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 324 (965)
.+..... .+-.+. -=+||+|.+.-.+......+..+++ +++|+|+.--..
T Consensus 239 rlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll~al~---~~~rlIlvGD~~ 296 (586)
T TIGR01447 239 RLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLLKALP---PNTKLILLGDKN 296 (586)
T ss_pred hhhcccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHHHhcC---CCCEEEEECChh
Confidence 1111000 000011 1289999997655555555666554 457888765433
No 437
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=93.25 E-value=0.43 Score=55.19 Aligned_cols=134 Identities=14% Similarity=0.151 Sum_probs=71.1
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHH
Q 002115 179 EIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIE 258 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 258 (965)
.++|......++.+.+..... ....+.|.|..|.|||++|+.+..... ......+-|++..- ..+.+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~----~~~~vli~Ge~GtGK~~~A~~ih~~~~--~~~~~~~~~~c~~~--~~~~~~~~l- 205 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSR----SDITVLINGESGTGKELVARALHRHSP--RANGPFIALNMAAI--PKDLIESEL- 205 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhC----cCCeEEEECCCCCCHHHHHHHHHHhCC--CCCCCeEEEeCCCC--CHHHHHHHh-
Confidence 478888777877777654322 233678999999999999999987521 12222333333332 223333322
Q ss_pred HhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC-----------CCcEEEEeecch
Q 002115 259 SLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL-----------HESKILITTRKE 324 (965)
Q Consensus 259 ~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 324 (965)
++........... ......-....-.|+||++..-.......+...+..+. .+.+||+||...
T Consensus 206 -fg~~~~~~~~~~~--~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 206 -FGHEKGAFTGANT--RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred -cCCCCCCCCCccc--CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 1211100000000 00000001123348899998766556666776665432 245888888643
No 438
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.25 E-value=0.52 Score=53.35 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=44.9
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCC
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSE-PFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEG 283 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 283 (965)
..|++++|..|+||||++.+++.....+..-..+..|.... .....+-++...+.++.......+..+....+ ..+.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 47999999999999999999987532221112344554432 11222334444444433221111222222222 23344
Q ss_pred ceEEEEEeCCC
Q 002115 284 KKFLLVLDDLW 294 (965)
Q Consensus 284 kr~LlVlDdv~ 294 (965)
+ ..+++|-.-
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 4 467777764
No 439
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.22 E-value=0.053 Score=54.46 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+|+|.|..|+||||+|+.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 440
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.21 E-value=0.064 Score=52.84 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.++.|+|+.|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998775
No 441
>PRK15453 phosphoribulokinase; Provisional
Probab=93.21 E-value=0.42 Score=49.57 Aligned_cols=76 Identities=22% Similarity=0.193 Sum_probs=42.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcccccccccc-ceEEEEcCC--CCCHHHHHHHHHH--HhcC--CC--CCCCCHHHHH
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFE-KRIWVCVSE--PFDEFRIARAIIE--SLTG--SA--SNFGEFQSLM 274 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~--~~~~~~~~~~i~~--~l~~--~~--~~~~~~~~l~ 274 (965)
+..+|+|.|.+|+||||+|+.+... .+. .. ..+.++... .++....-..+.. .-+. .. ++.-+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~i--f~~-~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKI--FRR-ENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--Hhh-cCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 4569999999999999999988753 211 11 233443322 1232222222211 1111 12 4566778888
Q ss_pred HHHHHHhC
Q 002115 275 QHIQECVE 282 (965)
Q Consensus 275 ~~l~~~l~ 282 (965)
+.++.+..
T Consensus 81 ~~l~~l~~ 88 (290)
T PRK15453 81 QLFREYGE 88 (290)
T ss_pred HHHHHHhc
Confidence 88877655
No 442
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.20 E-value=0.57 Score=48.98 Aligned_cols=88 Identities=11% Similarity=0.048 Sum_probs=45.7
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHH--HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFR--IARAIIESLTGSASNFGEFQSLMQHIQECVE 282 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~--~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 282 (965)
..+++++|.+|+||||+++.+.... ...=..+.+++... +.... -++...+.++-......+...+...+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~-~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDH-SRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCC-CCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 3599999999999999998887542 11112344555542 22221 1222222222221112344445444433222
Q ss_pred -CceEEEEEeCCCc
Q 002115 283 -GKKFLLVLDDLWN 295 (965)
Q Consensus 283 -~kr~LlVlDdv~~ 295 (965)
++.=++++|..-.
T Consensus 152 ~~~~D~ViIDt~Gr 165 (270)
T PRK06731 152 EARVDYILIDTAGK 165 (270)
T ss_pred cCCCCEEEEECCCC
Confidence 2446788898754
No 443
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.17 E-value=0.068 Score=52.37 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.7
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...|.|+|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999876
No 444
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.16 E-value=0.42 Score=53.28 Aligned_cols=88 Identities=16% Similarity=0.162 Sum_probs=51.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCC-CHHHHHHHHHHHhcCC-------CCCCCCHHH---
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPF-DEFRIARAIIESLTGS-------ASNFGEFQS--- 272 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 272 (965)
.-..++|+|..|+|||||++.+++.. .-+..+++-+++.. ...++..+.+..-+.. ..+.....+
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 34588999999999999999998752 22455566666544 3334444443332111 111111111
Q ss_pred --HHHHHHHHh--CCceEEEEEeCCCc
Q 002115 273 --LMQHIQECV--EGKKFLLVLDDLWN 295 (965)
Q Consensus 273 --l~~~l~~~l--~~kr~LlVlDdv~~ 295 (965)
..-.+.+++ +++..|+++||+-+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 122244444 58999999999944
No 445
>PRK15115 response regulator GlrR; Provisional
Probab=93.15 E-value=0.96 Score=51.96 Aligned_cols=133 Identities=18% Similarity=0.142 Sum_probs=68.3
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHH
Q 002115 179 EIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIE 258 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 258 (965)
.++|....+.++.+....... ....|.|+|.+|+|||++|+.+.+... ..-...+.+++..- ....+...
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~----~~~~vli~Ge~GtGk~~lA~~ih~~s~--r~~~~f~~i~c~~~--~~~~~~~~-- 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ----SDVSVLINGQSGTGKEILAQAIHNASP--RASKPFIAINCGAL--PEQLLESE-- 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc----CCCeEEEEcCCcchHHHHHHHHHHhcC--CCCCCeEEEeCCCC--CHHHHHHH--
Confidence 477887777777765543221 223577999999999999999987522 11112233333321 22222222
Q ss_pred HhcCCCCC-CCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC-----------CCcEEEEeecch
Q 002115 259 SLTGSASN-FGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL-----------HESKILITTRKE 324 (965)
Q Consensus 259 ~l~~~~~~-~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 324 (965)
+.+...+ .........-+ .-....-.|+||++..-.......+...+..+. ...+||.||...
T Consensus 205 -lfg~~~~~~~~~~~~~~g~--~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~ 279 (444)
T PRK15115 205 -LFGHARGAFTGAVSNREGL--FQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD 279 (444)
T ss_pred -hcCCCcCCCCCCccCCCCc--EEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC
Confidence 1111100 00000000000 001223378999998765555666766665432 135888888643
No 446
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.13 E-value=0.23 Score=50.49 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.|.|+|++|+||||+|+.+...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 447
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.13 E-value=0.0052 Score=59.87 Aligned_cols=85 Identities=16% Similarity=0.135 Sum_probs=67.5
Q ss_pred hhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCcccc
Q 002115 587 FDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIG 666 (965)
Q Consensus 587 ~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~ 666 (965)
+..++...+||++.|. +..+-..+..++.|..|+++.|. +..+|+.++.+..+..+++..|. .+.+|.+++
T Consensus 38 i~~~kr~tvld~~s~r-------~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~ 108 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNR-------LVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNN-HSQQPKSQK 108 (326)
T ss_pred hhccceeeeehhhhhH-------HHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccc-hhhCCcccc
Confidence 5667788888888443 34555667777888888888888 88888888888888888888877 888888888
Q ss_pred CCCCccEeecCCCc
Q 002115 667 KLRKLMYLENDGTY 680 (965)
Q Consensus 667 ~L~~L~~L~l~~~~ 680 (965)
++++++.+++.++.
T Consensus 109 k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTE 122 (326)
T ss_pred ccCCcchhhhccCc
Confidence 88888888887773
No 448
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.07 E-value=0.22 Score=53.68 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=18.9
Q ss_pred EEEEecCCChHHHHHHHHHcc
Q 002115 208 ISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 208 v~I~G~gGiGKTtLa~~v~~~ 228 (965)
+.+.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999865
No 449
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=92.99 E-value=0.15 Score=54.53 Aligned_cols=157 Identities=17% Similarity=0.243 Sum_probs=80.1
Q ss_pred ccccchHHHHHHHHHHhcCCCC-----------CCCCcEEEEEEecCCChHHHHHHHHHccccccc--ccc---ceEEEE
Q 002115 179 EIFGREEEKNELVNRLLCESSK-----------EQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKR--NFE---KRIWVC 242 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~F~---~~~wv~ 242 (965)
+..|-..+...|...+-..... .-..-.+++|+|..|+||||+.+++........ .|. ..+-|.
T Consensus 372 d~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp 451 (593)
T COG2401 372 DIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP 451 (593)
T ss_pred ecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecc
Confidence 3456667777777765321110 012334899999999999999999886522111 111 111111
Q ss_pred -------c----CCCCCHHHHHHHHHHHhcC-------------CC--------CCCCCHHHHHHHHHHHhCCceEEEEE
Q 002115 243 -------V----SEPFDEFRIARAIIESLTG-------------SA--------SNFGEFQSLMQHIQECVEGKKFLLVL 290 (965)
Q Consensus 243 -------v----s~~~~~~~~~~~i~~~l~~-------------~~--------~~~~~~~~l~~~l~~~l~~kr~LlVl 290 (965)
+ ...++...++.++.+..+. .. .+..+...-...|.+.+.++.=+++.
T Consensus 452 ~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~i 531 (593)
T COG2401 452 KNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLI 531 (593)
T ss_pred ccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEh
Confidence 0 1112222333333322221 10 01112222334566777788788898
Q ss_pred eCCCcchhhchHh--HHhhhcCC--CCCcEEEEeecchHHHhhcCCcceE
Q 002115 291 DDLWNEVYYKWEP--FYKCLKNG--LHESKILITTRKEIVARCMRSTNVI 336 (965)
Q Consensus 291 Ddv~~~~~~~~~~--l~~~l~~~--~~gs~ilvTtR~~~v~~~~~~~~~~ 336 (965)
|..... .+.... +...+..- ..|+.+++.|+..++..++..+..+
T Consensus 532 DEF~Ah-LD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li 580 (593)
T COG2401 532 DEFAAH-LDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLI 580 (593)
T ss_pred hhhhhh-cCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeE
Confidence 987442 111111 22223322 2577788888878888777655443
No 450
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.98 E-value=0.71 Score=49.66 Aligned_cols=48 Identities=25% Similarity=0.125 Sum_probs=31.9
Q ss_pred eEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHh
Q 002115 335 VIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLA 383 (965)
Q Consensus 335 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPla 383 (965)
++++.+++.+|+..++.-..-.+-- .....-+...+++....+|+|--
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHH
Confidence 7899999999999998876532211 11122334566677777898853
No 451
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.97 E-value=0.17 Score=49.97 Aligned_cols=42 Identities=36% Similarity=0.370 Sum_probs=31.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHc
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYN 227 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 227 (965)
++++|.+..+..+.-.... ..-+.++|.+|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 4688988888887766642 34789999999999999999875
No 452
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.94 E-value=0.09 Score=52.70 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
....+|.|+|.+|+||||+|+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999874
No 453
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.94 E-value=0.075 Score=50.03 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=18.6
Q ss_pred EEEEEecCCChHHHHHHHHH
Q 002115 207 IISLVGMGGIGKTTLAQFAY 226 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~ 226 (965)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 454
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.92 E-value=0.44 Score=51.36 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=52.0
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHHH
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSAS-----NFGEFQSLMQHIQE 279 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~~ 279 (965)
-.+|.|-|-+|||||||.-++..+ ....- .++||+-.+.. .. .+--++.++.... ...+++...+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES~--~Q-iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEESL--QQ-IKLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcCH--HH-HHHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 358999999999999999999876 43333 67788665433 22 2222344443222 12345555544443
Q ss_pred HhCCceEEEEEeCCCc
Q 002115 280 CVEGKKFLLVLDDLWN 295 (965)
Q Consensus 280 ~l~~kr~LlVlDdv~~ 295 (965)
.+.-++|+|-+..
T Consensus 167 ---~~p~lvVIDSIQT 179 (456)
T COG1066 167 ---EKPDLVVIDSIQT 179 (456)
T ss_pred ---cCCCEEEEeccce
Confidence 6788999999854
No 455
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.91 E-value=0.066 Score=50.95 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
++.|+|.+|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999875
No 456
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.91 E-value=0.7 Score=45.64 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=18.8
Q ss_pred EEEEEecCCChHHHHHHHHHc
Q 002115 207 IISLVGMGGIGKTTLAQFAYN 227 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~ 227 (965)
++.|+|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999884
No 457
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=92.89 E-value=1 Score=45.92 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.6
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-.+++|+|..|.|||||++.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 349999999999999999999874
No 458
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=92.87 E-value=0.26 Score=56.90 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=37.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..++|....++++.+.+..-.. ...-|.|.|..|.||+++|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~----~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR----SDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCcCHHHHHHHHHHh
Confidence 3589999999988888754332 2346889999999999999999975
No 459
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.86 E-value=0.28 Score=58.56 Aligned_cols=85 Identities=18% Similarity=0.145 Sum_probs=55.7
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHH
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSA-----SNFGEFQSLMQHI 277 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l 277 (965)
+.-+++-|+|.+|+||||||.+++... ...=..++|+...+.+++. .+++++... ......+.....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a--~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANA--QAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 356799999999999999997765442 1222457899888877743 556665431 1122345555556
Q ss_pred HHHhC-CceEEEEEeCCC
Q 002115 278 QECVE-GKKFLLVLDDLW 294 (965)
Q Consensus 278 ~~~l~-~kr~LlVlDdv~ 294 (965)
...++ ++--|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 66554 456689999985
No 460
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.86 E-value=0.49 Score=48.68 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=29.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCC
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSE 245 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 245 (965)
.-.++.|.|.+|+||||+|.++.... .+ .-..++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~~-~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-LR-DGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-Hh-cCCeEEEEEccC
Confidence 45699999999999999998866431 11 234677887744
No 461
>PLN02348 phosphoribulokinase
Probab=92.85 E-value=0.47 Score=51.75 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=23.5
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
....+|+|.|.+|.||||+|+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999875
No 462
>PRK13948 shikimate kinase; Provisional
Probab=92.83 E-value=0.088 Score=51.53 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..+.|.++|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999876
No 463
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.83 E-value=0.074 Score=52.13 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999865
No 464
>PRK05922 type III secretion system ATPase; Validated
Probab=92.82 E-value=0.51 Score=52.52 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=49.7
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCC-CCHHHHHHHHHHHhcCC-------CCCCCCHH-----H
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEP-FDEFRIARAIIESLTGS-------ASNFGEFQ-----S 272 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 272 (965)
..++|+|..|+|||||.+.+.+.. .-+..+++.+++. ....+.+.+........ ..+..... .
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 479999999999999999998752 2234444444443 23344444444333221 11111111 1
Q ss_pred HHHHHHHHh--CCceEEEEEeCCCc
Q 002115 273 LMQHIQECV--EGKKFLLVLDDLWN 295 (965)
Q Consensus 273 l~~~l~~~l--~~kr~LlVlDdv~~ 295 (965)
..-.+.+++ ++++.|+++||+-.
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 122244444 58999999999944
No 465
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.81 E-value=0.13 Score=62.53 Aligned_cols=177 Identities=18% Similarity=0.161 Sum_probs=79.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHHHH
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSAS---NFGEFQSLMQHIQEC 280 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---~~~~~~~l~~~l~~~ 280 (965)
..+++.|+|+.+.||||+.+.+.-..- ..+.-.+|.+.... .-.+...|...++.... ....+..-...+...
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~---maq~G~~vpa~~~~-~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~I 401 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAAL---MAKSGLPIPANEPS-EIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRI 401 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHH---HHHhCCCcccCCCc-cccccceEEEecCCccchhhchhHHHHHHHHHHHH
Confidence 456899999999999999988864310 01122233322110 00111111111111100 001111111112222
Q ss_pred hC--CceEEEEEeCCCcc-hhhchHhH----HhhhcCCCCCcEEEEeecchHHHhhcCCcceEeCCCCC-hHHHHHHHHH
Q 002115 281 VE--GKKFLLVLDDLWNE-VYYKWEPF----YKCLKNGLHESKILITTRKEIVARCMRSTNVIYVNVLS-EIECWSVFEQ 352 (965)
Q Consensus 281 l~--~kr~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~-~~~~~~lf~~ 352 (965)
+. ..+-|+++|..-.. +...-..+ ...+.. .|+.+|+||....+.........+.-..+. +++......+
T Consensus 402 l~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~--~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~~l~~~Yk 479 (782)
T PRK00409 402 LEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRK--RGAKIIATTHYKELKALMYNREGVENASVEFDEETLRPTYR 479 (782)
T ss_pred HHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH--CCCEEEEECChHHHHHHHhcCCCeEEEEEEEecCcCcEEEE
Confidence 22 47789999998642 22222223 223322 478999999988776654332111100000 1111111111
Q ss_pred HhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhhcCC
Q 002115 353 LAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLLQSR 394 (965)
Q Consensus 353 ~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~ 394 (965)
... +.+ . ...|-+|++.+ |+|-.+.--|.-+-..
T Consensus 480 l~~--G~~-g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~ 513 (782)
T PRK00409 480 LLI--GIP-G----KSNAFEIAKRL-GLPENIIEEAKKLIGE 513 (782)
T ss_pred Eee--CCC-C----CcHHHHHHHHh-CcCHHHHHHHHHHHhh
Confidence 111 111 1 12366677666 7888888777766544
No 466
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.81 E-value=0.11 Score=51.44 Aligned_cols=36 Identities=31% Similarity=0.339 Sum_probs=27.9
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEE
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVC 242 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 242 (965)
.+++.|+|+.|+|||||++++... ....|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~--~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQE--FPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH--STTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh--cccccccceeec
Confidence 468999999999999999999976 555674444443
No 467
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=0.19 Score=49.85 Aligned_cols=55 Identities=27% Similarity=0.304 Sum_probs=38.7
Q ss_pred ccccchHHHHHHHHHHhcCCCC-------CCCCcEEEEEEecCCChHHHHHHHHHccccccccc
Q 002115 179 EIFGREEEKNELVNRLLCESSK-------EQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNF 235 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 235 (965)
++=|.+-.+++|.+...-+-.. +-..++-|.++|++|.|||.||++|.++ ....|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~--t~a~f 217 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH--TTAAF 217 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc--cchhe
Confidence 4557777777777765322110 2345677889999999999999999998 44444
No 468
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=92.81 E-value=3.2 Score=43.90 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=48.5
Q ss_pred CceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecch-HHHhh-cCCcceEeCCCCChHHHHHHHHH
Q 002115 283 GKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKE-IVARC-MRSTNVIYVNVLSEIECWSVFEQ 352 (965)
Q Consensus 283 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~ 352 (965)
+++=++|+|++.......+..+...+-.-..++.+|++|.+. .+... ..-...+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 566799999998887788899999887766667777777553 33332 23366788866 66666666653
No 469
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.80 E-value=1.1 Score=46.10 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||.+.+..-
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999864
No 470
>PRK14528 adenylate kinase; Provisional
Probab=92.79 E-value=0.28 Score=48.54 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+.|.|.|++|+||||+|+.+...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~ 24 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCER 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999765
No 471
>PRK13949 shikimate kinase; Provisional
Probab=92.78 E-value=0.077 Score=51.49 Aligned_cols=22 Identities=45% Similarity=0.474 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-|.|+|++|+||||+++.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999876
No 472
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.74 E-value=1.6 Score=44.01 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.6
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-.+++|+|..|.|||||++.+..-
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 349999999999999999999875
No 473
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.72 E-value=0.27 Score=58.05 Aligned_cols=74 Identities=15% Similarity=0.140 Sum_probs=49.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccc-cccceEEEEcCCCCCHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKR-NFEKRIWVCVSEPFDEFRIARAI 256 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~i 256 (965)
++++|.++.++.+...+... +.+.++|++|+||||+|+.+.+. +.. .|...+++. ....+...+++.+
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~~-n~~~~~~~~~~~v 86 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVYP-NPEDPNMPRIVEV 86 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEEe-CCCCCchHHHHHH
Confidence 46889998888777766432 24559999999999999999976 333 333333332 2233556667777
Q ss_pred HHHhcC
Q 002115 257 IESLTG 262 (965)
Q Consensus 257 ~~~l~~ 262 (965)
..+++.
T Consensus 87 ~~~~g~ 92 (608)
T TIGR00764 87 PAGEGR 92 (608)
T ss_pred HHhhch
Confidence 777654
No 474
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.71 E-value=0.39 Score=53.42 Aligned_cols=87 Identities=18% Similarity=0.193 Sum_probs=48.9
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCC-CCCHHHHHHHHHHHhcCC-------CCCCCCHHH----
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSE-PFDEFRIARAIIESLTGS-------ASNFGEFQS---- 272 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 272 (965)
-..++|+|..|+|||||++.+..... . +..+.+.+.+ .....++....+..-+.. ..+.....+
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 35899999999999999999987522 1 2233333333 334444555443332111 111111221
Q ss_pred -HHHHHHHHh--CCceEEEEEeCCCc
Q 002115 273 -LMQHIQECV--EGKKFLLVLDDLWN 295 (965)
Q Consensus 273 -l~~~l~~~l--~~kr~LlVlDdv~~ 295 (965)
..-.+.+++ ++++.|+++||+-.
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122244455 58999999999844
No 475
>PRK13947 shikimate kinase; Provisional
Probab=92.71 E-value=0.077 Score=51.80 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999876
No 476
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=92.70 E-value=0.85 Score=55.11 Aligned_cols=144 Identities=16% Similarity=0.206 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCC
Q 002115 184 EEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGS 263 (965)
Q Consensus 184 ~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 263 (965)
...+++|.+.+.. ..||.|+|..|.||||-.-+.+-+... .....|-+.=........+...++++++..
T Consensus 52 ~~~~~~i~~ai~~--------~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~ 121 (845)
T COG1643 52 TAVRDEILKAIEQ--------NQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEK 121 (845)
T ss_pred HHHHHHHHHHHHh--------CCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCC
Confidence 4667888888753 349999999999999999777765222 112233332222334556777888888653
Q ss_pred CCC-------------------CCCHHHHHHHHH-HHhCCceEEEEEeCCCcchhhchHhHHhh----hcCCCCCcEEEE
Q 002115 264 ASN-------------------FGEFQSLMQHIQ-ECVEGKKFLLVLDDLWNEVYYKWEPFYKC----LKNGLHESKILI 319 (965)
Q Consensus 264 ~~~-------------------~~~~~~l~~~l~-~~l~~kr~LlVlDdv~~~~~~~~~~l~~~----l~~~~~gs~ilv 319 (965)
..+ .....-+.+.++ ..+-++=-.||+|.+.+-+. +-+-+... +......-||||
T Consensus 122 ~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl-~tDilLgllk~~~~~rr~DLKiIi 200 (845)
T COG1643 122 LGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSL-NTDILLGLLKDLLARRRDDLKLII 200 (845)
T ss_pred cCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhH-HHHHHHHHHHHHHhhcCCCceEEE
Confidence 110 012234444444 23334455899999976332 11112222 222333589999
Q ss_pred eecc---hHHHhhcCCcceEeC
Q 002115 320 TTRK---EIVARCMRSTNVIYV 338 (965)
Q Consensus 320 TtR~---~~v~~~~~~~~~~~l 338 (965)
+|-. +..+..++...++++
T Consensus 201 mSATld~~rfs~~f~~apvi~i 222 (845)
T COG1643 201 MSATLDAERFSAYFGNAPVIEI 222 (845)
T ss_pred EecccCHHHHHHHcCCCCEEEe
Confidence 9965 334444554444443
No 477
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.67 E-value=0.45 Score=52.94 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+.+|.++|..|+||||++.+++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999888754
No 478
>PRK06936 type III secretion system ATPase; Provisional
Probab=92.64 E-value=0.44 Score=53.09 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=52.0
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCC-CHHHHHHHHHHHhcCC-------CCCCCCHHHH---
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPF-DEFRIARAIIESLTGS-------ASNFGEFQSL--- 273 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~l--- 273 (965)
-..++|.|..|+|||||.+.+++.. .-+.++++-+++.. ...++....+..-+.. ..+.....+.
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSA----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCC----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 3489999999999999999999862 23567777776654 3344443333221111 1111111111
Q ss_pred --HHHHHHHh--CCceEEEEEeCCCc
Q 002115 274 --MQHIQECV--EGKKFLLVLDDLWN 295 (965)
Q Consensus 274 --~~~l~~~l--~~kr~LlVlDdv~~ 295 (965)
.-.+.+++ ++++.|+++||+-+
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 11234444 58999999999944
No 479
>PRK04328 hypothetical protein; Provisional
Probab=92.62 E-value=0.32 Score=50.68 Aligned_cols=47 Identities=23% Similarity=0.330 Sum_probs=32.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHH
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIAR 254 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 254 (965)
.-.++.|.|.+|.|||+||.++.... . ..-...+||+..+ ++..+.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee--~~~~i~~ 68 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEE--HPVQVRR 68 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeC--CHHHHHH
Confidence 45699999999999999998866541 2 2234678888766 3444433
No 480
>PF13479 AAA_24: AAA domain
Probab=92.62 E-value=0.37 Score=48.89 Aligned_cols=20 Identities=45% Similarity=0.414 Sum_probs=18.2
Q ss_pred EEEEEEecCCChHHHHHHHH
Q 002115 206 CIISLVGMGGIGKTTLAQFA 225 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v 225 (965)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 46889999999999999887
No 481
>COG4240 Predicted kinase [General function prediction only]
Probab=92.61 E-value=0.4 Score=47.07 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=56.3
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhc-----CCCCCCCCHHHHHHHH
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLT-----GSASNFGEFQSLMQHI 277 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~l~~~l 277 (965)
+.+-+++|.|.-|.||||++..+++.-.-++- ..++..++.+-+-...-...++++.. ...++..|..-....+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 45779999999999999999999987322221 46667666655544555556666642 1234556777777778
Q ss_pred HHHhCCceE
Q 002115 278 QECVEGKKF 286 (965)
Q Consensus 278 ~~~l~~kr~ 286 (965)
....+++.-
T Consensus 127 nai~~g~~~ 135 (300)
T COG4240 127 NAIARGGPT 135 (300)
T ss_pred HHHhcCCCC
Confidence 877777633
No 482
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.59 E-value=0.089 Score=51.88 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
++++|+|+.|+||||||+.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47999999999999999999874
No 483
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.58 E-value=0.12 Score=48.81 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=23.2
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
++..||.+.|.+|.||||+|.+++..
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~ 46 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEK 46 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999875
No 484
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.54 E-value=0.24 Score=54.18 Aligned_cols=109 Identities=16% Similarity=0.108 Sum_probs=66.3
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHH
Q 002115 179 EIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIE 258 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 258 (965)
.++|+++.+..+...+.... -+.+.|.+|+|||+||+.+... ... ...+|.+.....+.++.....-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~~--l~~---~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALARA--LGL---PFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHHH--hCC---CeEEEecCCCCCHHHhcCchhH
Confidence 47898888888887776432 6889999999999999999876 332 3456666666666665443322
Q ss_pred HhcCCCCCCCCHHHHHHHHHHH-----hCCceEEEEEeCCCcchhhchHhHHhhhcC
Q 002115 259 SLTGSASNFGEFQSLMQHIQEC-----VEGKKFLLVLDDLWNEVYYKWEPFYKCLKN 310 (965)
Q Consensus 259 ~l~~~~~~~~~~~~l~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 310 (965)
....... ....+ +..-+.++.+|.++......-..+...+..
T Consensus 92 ~~~~~~~----------~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e 138 (329)
T COG0714 92 AALLLEP----------GEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEE 138 (329)
T ss_pred hhhhccC----------CeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhC
Confidence 2110000 00000 011125899999988654444445555443
No 485
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.53 E-value=0.095 Score=47.44 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEEecCCChHHHHHHHHHccc
Q 002115 208 ISLVGMGGIGKTTLAQFAYNND 229 (965)
Q Consensus 208 v~I~G~gGiGKTtLa~~v~~~~ 229 (965)
|.|+|..|+|||||.+.+...+
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999764
No 486
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=92.52 E-value=0.38 Score=57.98 Aligned_cols=131 Identities=18% Similarity=0.151 Sum_probs=70.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
+.++|....+.++.+.+..... ...-|.|+|..|+||+++|+.+.+... ..-..-+.|++..-. ...+..+++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~s~--r~~~pfv~vnc~~~~-~~~~~~elf 397 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNESE--RAAGPYIAVNCQLYP-DEALAEEFL 397 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHhCC--ccCCCeEEEECCCCC-hHHHHHHhc
Confidence 4578999888888887765432 222478999999999999999987521 111223344444322 222222332
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC---C--------CcEEEEeecc
Q 002115 258 ESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL---H--------ESKILITTRK 323 (965)
Q Consensus 258 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~---~--------gs~ilvTtR~ 323 (965)
....+.... .... .+. ....=.|+||++..........+...+..+. . ..+||.||..
T Consensus 398 g~~~~~~~~-~~~g----~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 398 GSDRTDSEN-GRLS----KFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred CCCCcCccC-CCCC----cee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 211000000 0000 000 1123358999998765555666776665432 1 3467777754
No 487
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=92.51 E-value=0.34 Score=54.08 Aligned_cols=90 Identities=20% Similarity=0.189 Sum_probs=55.4
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCC-CHHHHHHHHHHHhcCC-------CCCCCCHHH----
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPF-DEFRIARAIIESLTGS-------ASNFGEFQS---- 272 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 272 (965)
-..++|.|.+|+|||+|+.++..... +.+-+.++|+-+++.. ...++.+.+...=... ..+.....+
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 34799999999999999999877622 2334678888887654 3445555554321111 111111111
Q ss_pred -HHHHHHHHh---CCceEEEEEeCCCc
Q 002115 273 -LMQHIQECV---EGKKFLLVLDDLWN 295 (965)
Q Consensus 273 -l~~~l~~~l---~~kr~LlVlDdv~~ 295 (965)
..-.+.+++ ++++.|+++||+-+
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHH
Confidence 222345555 46999999999944
No 488
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.51 E-value=0.17 Score=47.95 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 185 EEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 185 ~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+.++++.++|. + +++.++|..|+|||||+..+..+
T Consensus 24 ~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 44777777773 2 59999999999999999999986
No 489
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.50 E-value=0.087 Score=50.90 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=18.5
Q ss_pred EEEEecCCChHHHHHHHHHcc
Q 002115 208 ISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 208 v~I~G~gGiGKTtLa~~v~~~ 228 (965)
|.|.|.+|+|||||++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 689999999999999999876
No 490
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.48 E-value=0.66 Score=52.10 Aligned_cols=91 Identities=20% Similarity=0.179 Sum_probs=53.4
Q ss_pred cEEEEEEecCCChHHHHH-HHHHccccc-----cccccceEEEEcCCCCCHHHHHHHHHHHhcC-C-------CCCCCCH
Q 002115 205 PCIISLVGMGGIGKTTLA-QFAYNNDGV-----KRNFEKRIWVCVSEPFDEFRIARAIIESLTG-S-------ASNFGEF 270 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-~-------~~~~~~~ 270 (965)
-..++|.|-.|+|||+|| ..+.+...+ .++-+.++++-+++..+.-.-+.+.+++-+. . ..+....
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 347899999999999997 666665322 1234577888888876443334444444331 1 0111111
Q ss_pred HH-----HHHHHHHHh--CCceEEEEEeCCCc
Q 002115 271 QS-----LMQHIQECV--EGKKFLLVLDDLWN 295 (965)
Q Consensus 271 ~~-----l~~~l~~~l--~~kr~LlVlDdv~~ 295 (965)
.+ ..-.+.+++ +++..|+|+||+..
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 11 112233344 58999999999954
No 491
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=92.47 E-value=0.43 Score=53.05 Aligned_cols=90 Identities=14% Similarity=0.204 Sum_probs=56.2
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccc--ccc---------ceEEEEcCCCCCHHHHHHHHHHHhc-CC-------CCC
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKR--NFE---------KRIWVCVSEPFDEFRIARAIIESLT-GS-------ASN 266 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~F~---------~~~wv~vs~~~~~~~~~~~i~~~l~-~~-------~~~ 266 (965)
..++|.|-.|+|||||+.++.+...... ..| .++++-+++.....+.+.+.+..-+ .. ..+
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 4789999999999999999887633100 012 5678888887666666666655543 11 111
Q ss_pred CCCHHH-----HHHHHHHHhC---CceEEEEEeCCCc
Q 002115 267 FGEFQS-----LMQHIQECVE---GKKFLLVLDDLWN 295 (965)
Q Consensus 267 ~~~~~~-----l~~~l~~~l~---~kr~LlVlDdv~~ 295 (965)
.....+ ..-.+.++++ +++.|+++||+-+
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 112221 1122445554 6999999999943
No 492
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.46 E-value=0.64 Score=49.86 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=49.2
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCC-CCCHHHHHHHHHHHhcCC-------CCCCCCHH-----H
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSE-PFDEFRIARAIIESLTGS-------ASNFGEFQ-----S 272 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 272 (965)
..++|+|..|.|||||.+.+.+... -+..+.+.+.. ..+..++.......-... ..+..... .
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~ 145 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence 4789999999999999999987522 12334444443 334555555554432211 11111111 1
Q ss_pred HHHHHHHHh--CCceEEEEEeCCCc
Q 002115 273 LMQHIQECV--EGKKFLLVLDDLWN 295 (965)
Q Consensus 273 l~~~l~~~l--~~kr~LlVlDdv~~ 295 (965)
..-.+.+++ ++|..||++||+-.
T Consensus 146 ~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 146 TATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHcCCCeEEEeccchH
Confidence 122233344 58999999999843
No 493
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.42 E-value=1.4 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.9
Q ss_pred cEEEEEEecCCChHHHHHHHHHc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYN 227 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~ 227 (965)
-..|+|+|..|+|||||++.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34899999999999999999876
No 494
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.42 E-value=0.11 Score=51.73 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.9
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 495
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=92.40 E-value=0.41 Score=55.48 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=36.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..++|....+.++.+.+..... ....|.|+|.+|+|||++|+.+...
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~----~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSR----SSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhc----cCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 3589998888888777654322 3346889999999999999999875
No 496
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.40 E-value=0.1 Score=52.08 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||++.+..-
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Confidence 48999999999999999999863
No 497
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=92.40 E-value=0.99 Score=48.22 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=21.9
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-.++++.|+.|.|||||.+.+..-
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 359999999999999999999985
No 498
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.37 E-value=0.55 Score=50.59 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.6
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-.+++|+|..|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 349999999999999999999875
No 499
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.36 E-value=0.14 Score=49.05 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.8
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-.++.|.|+.|+|||||+++++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 358899999999999999999987
No 500
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.33 E-value=0.12 Score=50.88 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+.++|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 5679999999999999999999865
Done!