Query 002115
Match_columns 965
No_of_seqs 568 out of 4485
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 12:58:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.3E-49 4.5E-54 465.0 26.6 316 181-522 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 9.1E-40 3.1E-44 382.1 22.3 286 179-514 129-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-37 4.8E-42 405.0 25.8 313 174-520 120-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.9E-34 6.4E-39 343.1 25.5 306 176-517 122-449 (591)
5 3rgz_A Protein brassinosteroid 100.0 1.1E-28 3.8E-33 301.8 15.0 390 540-964 269-767 (768)
6 4ecn_A Leucine-rich repeat pro 99.9 5E-27 1.7E-31 284.3 19.9 347 540-940 448-839 (876)
7 4eco_A Uncharacterized protein 99.9 9E-27 3.1E-31 278.1 17.7 344 540-940 206-599 (636)
8 3rgz_A Protein brassinosteroid 99.9 6.3E-27 2.2E-31 286.3 14.3 351 540-939 247-691 (768)
9 4eco_A Uncharacterized protein 99.9 1.1E-26 3.6E-31 277.5 15.4 367 540-940 81-578 (636)
10 4ecn_A Leucine-rich repeat pro 99.9 8.1E-26 2.8E-30 273.7 16.7 323 583-940 440-818 (876)
11 3t6q_A CD180 antigen; protein- 99.9 5.4E-25 1.8E-29 263.2 17.9 358 540-940 33-461 (606)
12 3v47_A TOLL-like receptor 5B a 99.9 1.1E-24 3.8E-29 250.7 19.8 364 540-939 30-406 (455)
13 2z7x_B TOLL-like receptor 1, v 99.9 2E-24 6.9E-29 253.0 22.1 358 540-940 21-480 (520)
14 2z81_A CD282 antigen, TOLL-lik 99.9 3.3E-25 1.1E-29 261.7 14.9 378 540-939 26-508 (549)
15 3o6n_A APL1; leucine-rich repe 99.9 1.9E-24 6.4E-29 243.1 18.8 305 562-940 43-351 (390)
16 3vq2_A TLR4, TOLL-like recepto 99.9 3.3E-25 1.1E-29 265.0 13.2 143 540-693 32-177 (606)
17 4fmz_A Internalin; leucine ric 99.9 4.3E-24 1.5E-28 236.2 19.9 303 562-939 42-344 (347)
18 2z63_A TOLL-like receptor 4, v 99.9 9.1E-25 3.1E-29 259.4 15.0 366 540-939 28-529 (570)
19 3oja_B Anopheles plasmodium-re 99.9 2.7E-24 9.3E-29 255.3 18.5 305 562-940 49-357 (597)
20 3j0a_A TOLL-like receptor 5; m 99.9 6.8E-24 2.3E-28 262.2 22.0 282 540-849 24-373 (844)
21 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-24 5.1E-29 259.3 14.7 106 540-656 56-164 (606)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.4E-23 4.7E-28 247.9 21.9 341 540-940 52-509 (562)
23 3t6q_A CD180 antigen; protein- 99.9 4.1E-24 1.4E-28 255.5 16.8 160 665-848 274-435 (606)
24 2z7x_B TOLL-like receptor 1, v 99.9 6.2E-24 2.1E-28 248.8 17.7 356 543-939 3-455 (520)
25 2id5_A Lingo-1, leucine rich r 99.9 6.1E-24 2.1E-28 245.9 17.1 259 549-848 20-282 (477)
26 1ziw_A TOLL-like receptor 3; i 99.9 4.6E-24 1.6E-28 258.7 15.8 169 540-719 25-197 (680)
27 1o6v_A Internalin A; bacterial 99.9 4.1E-23 1.4E-27 237.7 21.1 335 540-939 46-386 (466)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.3E-23 1.1E-27 244.6 18.5 354 543-939 34-484 (562)
29 3v47_A TOLL-like receptor 5B a 99.9 5.1E-23 1.8E-27 236.8 17.8 334 564-939 30-382 (455)
30 3j0a_A TOLL-like receptor 5; m 99.9 9.6E-23 3.3E-27 251.9 20.0 347 548-939 12-392 (844)
31 1ziw_A TOLL-like receptor 3; i 99.9 9.8E-23 3.3E-27 247.0 19.6 368 540-939 49-515 (680)
32 2z63_A TOLL-like receptor 4, v 99.9 2.7E-23 9.3E-28 246.6 13.7 144 564-719 28-175 (570)
33 3o6n_A APL1; leucine-rich repe 99.9 5.6E-23 1.9E-27 231.0 15.4 305 540-917 45-352 (390)
34 2z81_A CD282 antigen, TOLL-lik 99.9 4.6E-23 1.6E-27 243.3 14.3 331 550-921 15-426 (549)
35 1o6v_A Internalin A; bacterial 99.9 3.4E-22 1.1E-26 230.1 21.1 318 562-939 44-364 (466)
36 4fmz_A Internalin; leucine ric 99.9 2E-22 6.7E-27 222.9 17.7 302 540-916 44-345 (347)
37 3oja_B Anopheles plasmodium-re 99.9 9.1E-23 3.1E-27 242.2 14.6 305 540-916 51-357 (597)
38 4fcg_A Uncharacterized protein 99.9 2.4E-22 8.2E-27 219.2 14.2 232 589-938 79-311 (328)
39 3bz5_A Internalin-J, INLJ; leu 99.9 2.4E-21 8.3E-26 220.9 22.9 306 562-939 40-350 (457)
40 2id5_A Lingo-1, leucine rich r 99.9 1.3E-22 4.5E-27 234.7 12.4 297 540-885 32-331 (477)
41 3bz5_A Internalin-J, INLJ; leu 99.9 1.5E-21 5E-26 222.6 17.7 280 586-939 37-329 (457)
42 1ogq_A PGIP-2, polygalacturona 99.9 3.6E-22 1.2E-26 216.5 9.0 247 541-849 51-302 (313)
43 1ogq_A PGIP-2, polygalacturona 99.9 3.5E-22 1.2E-26 216.6 7.2 130 564-700 50-181 (313)
44 4g8a_A TOLL-like receptor 4; l 99.9 2E-20 6.8E-25 225.2 23.2 145 540-696 52-200 (635)
45 2ft3_A Biglycan; proteoglycan, 99.8 6.4E-21 2.2E-25 209.0 16.5 198 616-849 73-275 (332)
46 2ft3_A Biglycan; proteoglycan, 99.8 8.8E-21 3E-25 207.9 14.3 290 592-939 34-331 (332)
47 1xku_A Decorin; proteoglycan, 99.8 3.4E-20 1.1E-24 203.2 17.6 292 565-938 32-329 (330)
48 1xku_A Decorin; proteoglycan, 99.8 9.7E-21 3.3E-25 207.4 12.5 265 591-940 31-305 (330)
49 4fcg_A Uncharacterized protein 99.8 1.9E-20 6.6E-25 204.0 11.6 222 562-847 79-310 (328)
50 1jl5_A Outer protein YOPM; leu 99.8 2.5E-20 8.6E-25 212.3 11.9 150 540-706 11-186 (454)
51 1z7x_W Ribonuclease inhibitor; 99.8 2.5E-22 8.7E-27 231.4 -7.6 370 540-940 3-410 (461)
52 4g8a_A TOLL-like receptor 4; l 99.8 1.5E-19 5.1E-24 217.5 15.3 153 553-720 44-200 (635)
53 2z80_A TOLL-like receptor 2, v 99.8 1.5E-19 5.3E-24 199.8 12.6 274 562-939 29-312 (353)
54 1jl5_A Outer protein YOPM; leu 99.8 6.6E-19 2.2E-23 200.6 13.4 301 562-939 9-348 (454)
55 2z80_A TOLL-like receptor 2, v 99.8 6E-19 2E-23 195.1 11.3 266 547-849 38-312 (353)
56 2z66_A Variable lymphocyte rec 99.8 6.3E-19 2.2E-23 190.8 10.2 244 545-849 12-259 (306)
57 3g06_A SSPH2 (leucine-rich rep 99.8 6.3E-18 2.1E-22 198.2 19.1 256 564-939 40-295 (622)
58 2z66_A Variable lymphocyte rec 99.8 1.1E-18 3.7E-23 188.9 10.9 80 591-679 28-111 (306)
59 3ogk_B Coronatine-insensitive 99.8 5.7E-19 2E-23 210.4 7.9 354 542-939 140-524 (592)
60 3ogk_B Coronatine-insensitive 99.7 6.2E-19 2.1E-23 210.1 7.7 358 540-939 112-499 (592)
61 3o53_A Protein LRIM1, AGAP0063 99.7 3.4E-19 1.2E-23 193.6 4.9 222 557-849 27-248 (317)
62 3zyi_A Leucine-rich repeat-con 99.7 3.1E-18 1.1E-22 196.1 12.8 217 566-848 56-276 (452)
63 3o53_A Protein LRIM1, AGAP0063 99.7 2.6E-19 8.9E-24 194.5 2.4 252 581-918 24-276 (317)
64 3zyj_A Leucine-rich repeat-con 99.7 2.4E-17 8.3E-22 188.0 18.5 99 593-703 45-146 (440)
65 1z7x_W Ribonuclease inhibitor; 99.7 2.6E-20 8.9E-25 214.6 -6.5 366 540-939 28-438 (461)
66 3zyj_A Leucine-rich repeat-con 99.7 5.3E-18 1.8E-22 193.5 12.1 239 566-848 45-289 (440)
67 3zyi_A Leucine-rich repeat-con 99.7 3.1E-17 1.1E-21 187.8 18.4 242 593-939 56-301 (452)
68 3oja_A Leucine-rich immune mol 99.7 1.5E-18 5E-23 199.7 5.7 75 592-679 35-109 (487)
69 1ozn_A Reticulon 4 receptor; N 99.7 7E-18 2.4E-22 180.4 10.2 63 785-849 173-236 (285)
70 3g06_A SSPH2 (leucine-rich rep 99.7 4.5E-17 1.5E-21 191.0 17.5 262 540-921 40-301 (622)
71 1wwl_A Monocyte differentiatio 99.7 2.3E-18 7.7E-23 186.6 6.0 64 786-849 198-264 (312)
72 1ozn_A Reticulon 4 receptor; N 99.7 6.2E-18 2.1E-22 180.8 9.0 156 745-938 126-284 (285)
73 1wwl_A Monocyte differentiatio 99.7 3.3E-18 1.1E-22 185.4 3.8 205 619-848 93-306 (312)
74 2p1m_B Transport inhibitor res 99.7 3.3E-18 1.1E-22 203.8 2.0 367 540-941 105-519 (594)
75 3oja_A Leucine-rich immune mol 99.7 1.1E-16 3.9E-21 184.0 12.0 215 563-849 33-248 (487)
76 1w5s_A Origin recognition comp 99.6 2.7E-15 9.2E-20 169.7 20.2 299 177-493 21-372 (412)
77 2qen_A Walker-type ATPase; unk 99.6 2.5E-14 8.6E-19 157.9 26.1 293 176-514 10-349 (350)
78 2ast_B S-phase kinase-associat 99.6 2.9E-17 9.7E-22 180.5 2.0 237 621-925 70-314 (336)
79 3qfl_A MLA10; coiled-coil, (CC 99.6 2.7E-16 9.3E-21 139.2 7.6 80 10-89 2-83 (115)
80 1p9a_G Platelet glycoprotein I 99.6 1.5E-15 5.1E-20 162.1 13.8 175 621-849 31-206 (290)
81 1h6u_A Internalin H; cell adhe 99.6 8.3E-16 2.8E-20 165.8 11.4 191 588-849 38-228 (308)
82 2o6q_A Variable lymphocyte rec 99.6 2.9E-15 9.9E-20 158.5 15.1 176 621-849 37-216 (270)
83 3rfs_A Internalin B, repeat mo 99.6 3.2E-15 1.1E-19 158.3 15.0 62 785-848 153-215 (272)
84 2ca6_A RAN GTPase-activating p 99.6 2.5E-17 8.4E-22 184.6 -1.6 246 562-849 30-314 (386)
85 1p9a_G Platelet glycoprotein I 99.6 4.9E-15 1.7E-19 158.0 15.7 151 617-848 6-158 (290)
86 2z62_A TOLL-like receptor 4, v 99.6 1.1E-15 3.9E-20 162.3 10.3 130 564-705 28-161 (276)
87 2o6q_A Variable lymphocyte rec 99.6 1.9E-14 6.3E-19 152.2 18.4 76 621-701 16-93 (270)
88 2p1m_B Transport inhibitor res 99.6 1.5E-16 5.2E-21 189.5 2.0 337 559-940 100-493 (594)
89 2fna_A Conserved hypothetical 99.6 2.6E-13 9E-18 150.1 27.2 290 176-513 11-356 (357)
90 2z62_A TOLL-like receptor 4, v 99.6 3.5E-15 1.2E-19 158.6 11.2 203 591-849 28-235 (276)
91 2xwt_C Thyrotropin receptor; s 99.6 9.8E-15 3.3E-19 151.4 13.7 56 622-678 32-89 (239)
92 2ast_B S-phase kinase-associat 99.6 8.6E-16 2.9E-20 168.6 3.9 206 564-848 70-282 (336)
93 2ca6_A RAN GTPase-activating p 99.6 1.7E-15 5.9E-20 169.5 5.8 264 540-847 32-339 (386)
94 4glp_A Monocyte differentiatio 99.5 1.2E-14 4.1E-19 157.1 11.7 205 591-849 91-305 (310)
95 3rfs_A Internalin B, repeat mo 99.5 5.7E-15 1.9E-19 156.3 8.8 193 588-847 38-231 (272)
96 4ay9_X Follicle-stimulating ho 99.5 3.1E-14 1.1E-18 156.7 15.0 69 624-696 12-82 (350)
97 1h6u_A Internalin H; cell adhe 99.5 3.2E-14 1.1E-18 153.4 13.7 193 562-829 39-231 (308)
98 4glp_A Monocyte differentiatio 99.5 1.1E-14 3.8E-19 157.4 6.7 229 540-829 64-308 (310)
99 2xwt_C Thyrotropin receptor; s 99.5 2.5E-14 8.7E-19 148.2 8.6 194 592-848 32-236 (239)
100 4ay9_X Follicle-stimulating ho 99.5 4.4E-14 1.5E-18 155.5 10.7 94 610-706 21-117 (350)
101 3goz_A Leucine-rich repeat-con 99.5 7.7E-15 2.6E-19 162.4 3.8 36 789-826 225-264 (362)
102 3m19_A Variable lymphocyte rec 99.5 3.5E-13 1.2E-17 140.7 14.4 172 592-849 15-190 (251)
103 3goz_A Leucine-rich repeat-con 99.5 3.3E-14 1.1E-18 157.3 5.9 257 549-827 7-296 (362)
104 2qby_B CDC6 homolog 3, cell di 99.4 4E-11 1.4E-15 133.9 29.6 294 178-494 20-341 (384)
105 1h6t_A Internalin B; cell adhe 99.4 2.3E-13 7.9E-18 145.2 10.1 80 588-679 43-122 (291)
106 1fnn_A CDC6P, cell division co 99.4 2.4E-11 8.3E-16 136.0 26.9 298 177-494 16-353 (389)
107 2v1u_A Cell division control p 99.4 5.3E-11 1.8E-15 133.1 29.5 293 177-493 18-352 (387)
108 1m9s_A Internalin B; cell inva 99.4 2.7E-13 9.2E-18 158.9 10.1 173 587-829 39-211 (605)
109 1h6t_A Internalin B; cell adhe 99.4 3E-13 1E-17 144.3 9.5 77 619-701 44-120 (291)
110 1m9s_A Internalin B; cell inva 99.4 3.8E-13 1.3E-17 157.6 9.6 170 617-849 39-208 (605)
111 3cvr_A Invasion plasmid antige 99.4 5.7E-13 1.9E-17 154.2 9.8 92 592-704 60-151 (571)
112 4ezg_A Putative uncharacterize 99.4 1.5E-12 5E-17 130.3 11.1 151 540-706 44-194 (197)
113 3m19_A Variable lymphocyte rec 99.4 9E-13 3.1E-17 137.5 9.6 131 565-707 36-169 (251)
114 1xeu_A Internalin C; cellular 99.4 5E-13 1.7E-17 140.2 7.2 167 589-849 17-183 (263)
115 2qby_A CDC6 homolog 1, cell di 99.3 7.3E-11 2.5E-15 131.9 23.9 297 177-493 19-349 (386)
116 1dce_A Protein (RAB geranylger 99.3 4.3E-14 1.5E-18 164.7 -3.4 193 588-844 346-566 (567)
117 3cvr_A Invasion plasmid antige 99.3 2.1E-12 7.2E-17 149.4 8.1 189 564-833 59-248 (571)
118 2o6s_A Variable lymphocyte rec 99.3 2.4E-11 8.1E-16 122.7 14.2 60 787-848 98-158 (208)
119 4ezg_A Putative uncharacterize 99.3 4.6E-12 1.6E-16 126.7 8.3 130 562-705 42-171 (197)
120 2o6s_A Variable lymphocyte rec 99.3 4.8E-12 1.6E-16 127.9 8.1 126 565-703 29-158 (208)
121 2v9t_B SLIT homolog 2 protein 99.3 5.5E-12 1.9E-16 128.3 8.5 146 546-706 17-165 (220)
122 3e6j_A Variable lymphocyte rec 99.3 6E-12 2E-16 129.0 8.6 146 545-706 24-172 (229)
123 1njg_A DNA polymerase III subu 99.3 1.2E-10 4E-15 121.1 17.9 198 178-391 23-231 (250)
124 4b8c_D Glucose-repressible alc 99.2 6.3E-12 2.1E-16 151.3 8.6 157 540-707 173-330 (727)
125 2ell_A Acidic leucine-rich nuc 99.2 1.4E-11 4.8E-16 119.6 8.5 133 562-707 22-161 (168)
126 2v70_A SLIT-2, SLIT homolog 2 99.2 1.7E-11 5.9E-16 124.7 9.5 148 544-706 15-166 (220)
127 2je0_A Acidic leucine-rich nuc 99.2 1.1E-11 3.6E-16 117.8 6.4 127 562-701 15-148 (149)
128 1xeu_A Internalin C; cellular 99.2 3.4E-11 1.2E-15 126.2 10.1 146 540-707 41-186 (263)
129 2xot_A Amphoterin-induced prot 99.2 2.3E-11 7.9E-16 134.2 8.2 104 591-703 39-146 (361)
130 3e6j_A Variable lymphocyte rec 99.2 4.4E-11 1.5E-15 122.5 9.4 131 540-682 40-172 (229)
131 2chg_A Replication factor C sm 99.2 9.8E-10 3.3E-14 112.2 19.0 185 178-388 17-204 (226)
132 3sb4_A Hypothetical leucine ri 99.2 2.3E-10 7.9E-15 124.5 14.7 290 562-935 23-328 (329)
133 1a9n_A U2A', U2A'; complex (nu 99.1 6.4E-11 2.2E-15 115.9 7.7 129 562-705 17-152 (176)
134 2v9t_B SLIT homolog 2 protein 99.1 6.9E-11 2.4E-15 120.2 8.1 130 540-681 32-164 (220)
135 4b8c_D Glucose-repressible alc 99.1 1.5E-11 5.3E-16 147.8 3.8 138 556-706 216-354 (727)
136 2ell_A Acidic leucine-rich nuc 99.1 5.3E-11 1.8E-15 115.5 6.6 134 540-688 24-165 (168)
137 2v70_A SLIT-2, SLIT homolog 2 99.1 1.1E-10 3.8E-15 118.6 8.8 131 540-682 32-166 (220)
138 2xot_A Amphoterin-induced prot 99.1 3.1E-11 1.1E-15 133.1 5.0 129 565-706 40-176 (361)
139 2je0_A Acidic leucine-rich nuc 99.0 1.3E-10 4.4E-15 110.2 5.6 125 540-678 17-149 (149)
140 1dce_A Protein (RAB geranylger 99.0 2.9E-10 1E-14 132.3 7.8 80 623-707 443-522 (567)
141 1ds9_A Outer arm dynein; leuci 99.0 3E-12 1E-16 128.1 -8.1 109 584-704 41-151 (198)
142 1w8a_A SLIT protein; signaling 99.0 5.7E-10 1.9E-14 110.7 8.3 86 617-704 50-137 (192)
143 1hqc_A RUVB; extended AAA-ATPa 99.0 2.5E-09 8.6E-14 116.1 13.4 275 178-491 12-324 (324)
144 1sxj_B Activator 1 37 kDa subu 99.0 6.6E-09 2.3E-13 112.7 16.3 186 178-389 21-211 (323)
145 1a9n_A U2A', U2A'; complex (nu 99.0 2.3E-10 7.8E-15 111.9 4.2 108 587-706 15-126 (176)
146 1ds9_A Outer arm dynein; leuci 99.0 8.2E-12 2.8E-16 124.9 -7.0 115 587-706 14-128 (198)
147 2wfh_A SLIT homolog 2 protein 98.9 1.9E-09 6.3E-14 106.9 9.5 103 592-704 32-137 (193)
148 2wfh_A SLIT homolog 2 protein 98.9 1.5E-09 5.1E-14 107.6 8.2 103 594-707 13-116 (193)
149 2o6r_A Variable lymphocyte rec 98.9 1.8E-09 6.1E-14 105.6 8.7 121 545-680 12-135 (177)
150 1w8a_A SLIT protein; signaling 98.9 1.1E-09 3.9E-14 108.5 7.0 127 594-762 11-140 (192)
151 3sb4_A Hypothetical leucine ri 98.8 2.6E-09 8.9E-14 116.1 7.2 288 540-910 25-327 (329)
152 1iqp_A RFCS; clamp loader, ext 98.8 5.7E-08 1.9E-12 105.5 16.0 187 178-391 25-215 (327)
153 2r9u_A Variable lymphocyte rec 98.8 6E-09 2.1E-13 101.2 7.3 80 591-679 33-115 (174)
154 3te6_A Regulatory protein SIR3 98.8 1.2E-07 4E-12 100.1 16.5 171 179-355 21-212 (318)
155 2r9u_A Variable lymphocyte rec 98.8 8.5E-09 2.9E-13 100.2 7.1 102 594-707 15-119 (174)
156 2o6r_A Variable lymphocyte rec 98.8 1.8E-08 6.2E-13 98.4 9.5 124 567-706 10-137 (177)
157 3g39_A Variable lymphocyte rec 98.8 9.4E-09 3.2E-13 99.5 7.1 80 591-679 30-112 (170)
158 4fdw_A Leucine rich hypothetic 98.7 2.7E-07 9.4E-12 102.3 19.4 140 789-956 248-394 (401)
159 1jr3_A DNA polymerase III subu 98.7 4.6E-07 1.6E-11 100.3 18.1 195 178-388 16-221 (373)
160 3g39_A Variable lymphocyte rec 98.7 4.1E-08 1.4E-12 95.0 8.3 103 593-707 11-116 (170)
161 2chq_A Replication factor C sm 98.6 5.1E-07 1.7E-11 97.5 16.0 182 178-388 17-204 (319)
162 4fdw_A Leucine rich hypothetic 98.5 3.7E-07 1.3E-11 101.3 11.7 239 563-849 112-356 (401)
163 4fs7_A Uncharacterized protein 98.5 1E-06 3.5E-11 98.1 14.7 310 555-938 62-376 (394)
164 1jbk_A CLPB protein; beta barr 98.5 8.6E-07 2.9E-11 87.6 11.8 151 178-350 22-194 (195)
165 3un9_A NLR family member X1; l 98.4 4.7E-08 1.6E-12 107.4 2.3 160 541-706 73-252 (372)
166 4fs7_A Uncharacterized protein 98.4 4.6E-06 1.6E-10 92.8 17.7 316 540-933 71-393 (394)
167 2ifg_A High affinity nerve gro 98.4 3E-07 1E-11 100.6 7.7 88 583-680 24-114 (347)
168 3pfi_A Holliday junction ATP-d 98.4 1E-05 3.4E-10 88.0 19.6 178 177-387 28-226 (338)
169 3bos_A Putative DNA replicatio 98.4 1.2E-06 4.1E-11 90.1 11.4 173 178-387 28-216 (242)
170 1sxj_D Activator 1 41 kDa subu 98.3 5.6E-06 1.9E-10 90.7 15.6 194 178-387 37-234 (353)
171 2ifg_A High affinity nerve gro 98.3 6.5E-07 2.2E-11 97.9 7.7 94 609-706 20-116 (347)
172 2ra8_A Uncharacterized protein 98.3 9.7E-07 3.3E-11 96.0 7.5 64 613-679 131-203 (362)
173 1sxj_E Activator 1 40 kDa subu 98.2 9.4E-06 3.2E-10 88.9 14.5 197 178-388 14-237 (354)
174 3h4m_A Proteasome-activating n 98.2 1.3E-05 4.4E-10 84.8 14.9 185 177-386 16-229 (285)
175 3un9_A NLR family member X1; l 98.2 1.1E-06 3.8E-11 96.4 6.8 138 540-681 101-251 (372)
176 3pvs_A Replication-associated 98.2 2.5E-05 8.6E-10 87.3 17.8 178 178-387 26-214 (447)
177 3uk6_A RUVB-like 2; hexameric 98.2 3.4E-05 1.2E-09 84.9 18.7 199 177-387 43-302 (368)
178 2z4s_A Chromosomal replication 98.2 2.2E-05 7.6E-10 88.0 16.4 160 205-385 130-303 (440)
179 1a5t_A Delta prime, HOLB; zinc 98.2 3.5E-05 1.2E-09 83.2 17.0 172 184-388 8-205 (334)
180 2qz4_A Paraplegin; AAA+, SPG7, 98.2 3.9E-05 1.3E-09 79.8 16.8 187 178-387 6-221 (262)
181 3u61_B DNA polymerase accessor 98.1 2.9E-05 9.7E-10 83.8 15.3 178 178-385 26-213 (324)
182 1sxj_A Activator 1 95 kDa subu 98.1 2.7E-05 9.1E-10 89.5 15.8 198 178-389 39-254 (516)
183 3syl_A Protein CBBX; photosynt 98.1 2.4E-05 8.3E-10 83.7 13.8 161 179-355 32-218 (309)
184 4gt6_A Cell surface protein; l 98.1 2.8E-05 9.4E-10 86.5 14.0 111 557-679 56-170 (394)
185 1d2n_A N-ethylmaleimide-sensit 98.0 6.3E-05 2.2E-09 78.7 14.8 171 178-379 33-228 (272)
186 1io0_A Tropomodulin; LRR prote 98.0 6.8E-06 2.3E-10 80.3 6.7 116 560-679 32-161 (185)
187 1l8q_A Chromosomal replication 98.0 3.9E-05 1.3E-09 82.6 13.1 154 205-382 37-202 (324)
188 3n70_A Transport activator; si 98.0 1.6E-05 5.3E-10 74.2 8.4 113 179-323 2-115 (145)
189 2p65_A Hypothetical protein PF 98.0 1.4E-05 4.8E-10 78.2 8.4 45 178-228 22-66 (187)
190 1sxj_C Activator 1 40 kDa subu 98.0 0.00011 3.8E-09 79.6 16.2 182 178-385 25-209 (340)
191 1io0_A Tropomodulin; LRR prote 97.9 4.3E-06 1.5E-10 81.8 4.2 120 582-705 27-163 (185)
192 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00056 1.9E-08 73.1 20.3 189 177-388 11-223 (322)
193 3d8b_A Fidgetin-like protein 1 97.9 0.00029 9.9E-09 76.7 17.4 187 178-389 84-296 (357)
194 3eie_A Vacuolar protein sortin 97.9 0.00036 1.2E-08 74.8 17.8 186 178-388 18-228 (322)
195 3rw6_A Nuclear RNA export fact 97.8 8.2E-06 2.8E-10 83.8 4.3 81 618-701 167-259 (267)
196 2qp9_X Vacuolar protein sortin 97.8 0.00025 8.6E-09 77.0 16.4 187 178-388 51-261 (355)
197 2ra8_A Uncharacterized protein 97.8 3E-06 1E-10 92.1 1.1 132 562-702 137-288 (362)
198 2w58_A DNAI, primosome compone 97.8 2.1E-05 7.3E-10 78.2 7.2 118 186-323 37-158 (202)
199 3e4g_A ATP synthase subunit S, 97.8 3.3E-06 1.1E-10 80.2 0.9 39 904-942 114-153 (176)
200 3b9p_A CG5977-PA, isoform A; A 97.8 0.00099 3.4E-08 70.5 19.1 183 178-387 21-232 (297)
201 2gno_A DNA polymerase III, gam 97.8 0.00016 5.3E-09 76.4 12.6 149 182-354 1-152 (305)
202 4gt6_A Cell surface protein; l 97.7 0.00035 1.2E-08 77.4 15.4 114 553-678 76-191 (394)
203 3co5_A Putative two-component 97.7 2.3E-05 7.8E-10 72.9 4.8 110 179-323 5-115 (143)
204 4fcw_A Chaperone protein CLPB; 97.7 0.00022 7.4E-09 76.3 12.8 136 179-323 18-169 (311)
205 3ec2_A DNA replication protein 97.7 5.4E-05 1.8E-09 73.6 7.3 121 183-323 19-142 (180)
206 3cf0_A Transitional endoplasmi 97.7 0.00072 2.5E-08 71.6 16.2 158 178-355 15-200 (301)
207 2zan_A Vacuolar protein sortin 97.6 0.0015 5.2E-08 73.1 19.1 189 177-388 133-345 (444)
208 3rw6_A Nuclear RNA export fact 97.6 3.5E-05 1.2E-09 79.1 4.7 85 586-676 165-258 (267)
209 3vfd_A Spastin; ATPase, microt 97.6 0.0011 3.9E-08 73.0 16.4 187 177-387 114-325 (389)
210 1qvr_A CLPB protein; coiled co 97.6 0.00032 1.1E-08 85.8 12.9 154 178-353 170-344 (854)
211 2bjv_A PSP operon transcriptio 97.5 0.00029 1E-08 73.2 10.8 132 178-323 6-150 (265)
212 3hu3_A Transitional endoplasmi 97.5 0.0011 3.6E-08 74.9 16.0 185 178-387 204-414 (489)
213 2c9o_A RUVB-like 1; hexameric 97.5 0.00055 1.9E-08 77.2 13.5 96 287-387 298-409 (456)
214 3pxg_A Negative regulator of g 97.5 0.00021 7.2E-09 80.8 9.6 147 178-354 180-338 (468)
215 3e4g_A ATP synthase subunit S, 97.5 1.8E-05 6E-10 75.2 0.5 39 875-918 115-153 (176)
216 2kjq_A DNAA-related protein; s 97.5 0.00013 4.5E-09 68.0 5.9 86 206-323 37-124 (149)
217 1ofh_A ATP-dependent HSL prote 97.4 0.0015 5.1E-08 69.6 15.0 153 178-352 15-213 (310)
218 1ojl_A Transcriptional regulat 97.4 0.00036 1.2E-08 73.9 9.7 131 178-323 2-146 (304)
219 1in4_A RUVB, holliday junction 97.4 0.0015 5.2E-08 70.3 14.3 177 178-387 25-222 (334)
220 1lv7_A FTSH; alpha/beta domain 97.4 0.0034 1.2E-07 64.7 16.4 158 177-354 11-195 (257)
221 4b4t_J 26S protease regulatory 97.3 0.004 1.4E-07 67.3 16.1 178 178-381 148-354 (405)
222 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0022 7.5E-08 77.6 15.8 155 178-354 186-362 (758)
223 3pxi_A Negative regulator of g 97.2 0.00081 2.8E-08 81.3 10.9 155 178-353 491-674 (758)
224 4b4t_K 26S protease regulatory 97.2 0.0035 1.2E-07 68.7 14.8 52 177-228 171-229 (428)
225 4h09_A Hypothetical leucine ri 97.1 0.0047 1.6E-07 67.9 15.2 78 562-654 44-122 (379)
226 4b4t_L 26S protease subunit RP 97.1 0.0047 1.6E-07 67.9 14.8 177 178-380 181-386 (437)
227 3pxi_A Negative regulator of g 97.1 0.0037 1.3E-07 75.5 14.3 149 178-354 180-338 (758)
228 2ce7_A Cell division protein F 97.0 0.0046 1.6E-07 69.1 13.5 179 178-381 16-221 (476)
229 4b4t_H 26S protease regulatory 97.0 0.0028 9.6E-08 69.4 10.8 177 178-380 209-414 (467)
230 2r44_A Uncharacterized protein 96.9 0.003 1E-07 68.0 10.5 152 178-355 27-199 (331)
231 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0021 7.2E-08 77.8 10.2 133 178-323 458-607 (758)
232 4b4t_M 26S protease regulatory 96.9 0.0019 6.4E-08 71.0 8.6 177 178-380 181-386 (434)
233 2cvh_A DNA repair and recombin 96.9 0.0039 1.3E-07 62.5 10.4 85 205-295 20-116 (220)
234 2r62_A Cell division protease 96.8 0.00061 2.1E-08 70.9 3.9 157 178-354 11-196 (268)
235 1qvr_A CLPB protein; coiled co 96.8 0.004 1.4E-07 76.1 11.7 135 179-323 559-710 (854)
236 2qgz_A Helicase loader, putati 96.8 0.00096 3.3E-08 70.7 5.2 56 184-243 134-189 (308)
237 4h09_A Hypothetical leucine ri 96.8 0.0099 3.4E-07 65.3 13.6 121 540-679 46-168 (379)
238 3m6a_A ATP-dependent protease 96.7 0.0072 2.5E-07 69.4 12.4 162 178-354 81-266 (543)
239 3cf2_A TER ATPase, transitiona 96.7 0.009 3.1E-07 70.8 13.1 179 178-381 204-407 (806)
240 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0011 3.7E-08 69.0 4.2 70 204-295 122-193 (331)
241 4b4t_I 26S protease regulatory 96.6 0.0071 2.4E-07 65.5 10.6 177 178-380 182-387 (437)
242 3t15_A Ribulose bisphosphate c 96.4 0.012 4.1E-07 61.7 10.5 26 203-228 34-59 (293)
243 1um8_A ATP-dependent CLP prote 96.3 0.017 5.8E-07 63.2 11.6 50 179-228 22-95 (376)
244 1jr3_D DNA polymerase III, del 96.3 0.075 2.6E-06 57.1 16.2 157 205-387 18-184 (343)
245 1ixz_A ATP-dependent metallopr 96.2 0.13 4.5E-06 52.5 16.9 157 178-354 16-199 (254)
246 1n0w_A DNA repair protein RAD5 96.2 0.012 4.2E-07 59.8 8.9 90 205-295 24-130 (243)
247 1ypw_A Transitional endoplasmi 96.1 0.018 6.2E-07 69.4 10.9 157 178-354 204-385 (806)
248 1iy2_A ATP-dependent metallopr 96.0 0.039 1.3E-06 57.4 12.2 159 176-354 38-223 (278)
249 2dhr_A FTSH; AAA+ protein, hex 95.9 0.061 2.1E-06 60.4 13.8 176 177-381 30-236 (499)
250 1tue_A Replication protein E1; 95.8 0.0044 1.5E-07 59.8 3.4 37 187-228 45-81 (212)
251 2x8a_A Nuclear valosin-contain 95.8 0.087 3E-06 54.4 13.5 155 178-354 10-191 (274)
252 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.024 8.3E-07 57.1 8.6 114 206-324 24-168 (235)
253 2b8t_A Thymidine kinase; deoxy 95.7 0.0082 2.8E-07 59.6 4.8 112 204-323 11-125 (223)
254 3lw7_A Adenylate kinase relate 95.6 0.072 2.4E-06 50.7 11.4 19 207-225 3-21 (179)
255 3hr8_A Protein RECA; alpha and 95.6 0.027 9.1E-07 60.3 8.5 85 204-295 60-150 (356)
256 1ye8_A Protein THEP1, hypothet 95.6 0.046 1.6E-06 52.3 9.4 22 207-228 2-23 (178)
257 1xp8_A RECA protein, recombina 95.5 0.034 1.2E-06 59.8 9.2 83 205-294 74-162 (366)
258 1v5w_A DMC1, meiotic recombina 95.5 0.057 1.9E-06 57.9 10.8 57 204-261 121-181 (343)
259 2i1q_A DNA repair and recombin 95.4 0.034 1.2E-06 59.2 8.7 57 204-261 97-167 (322)
260 3io5_A Recombination and repai 95.3 0.052 1.8E-06 56.2 9.3 82 207-295 30-122 (333)
261 2zr9_A Protein RECA, recombina 95.3 0.041 1.4E-06 59.0 9.0 85 204-295 60-150 (349)
262 1pzn_A RAD51, DNA repair and r 95.3 0.058 2E-06 57.9 10.1 91 204-295 130-242 (349)
263 1u94_A RECA protein, recombina 95.2 0.024 8.2E-07 60.9 6.9 84 204-294 62-151 (356)
264 1rz3_A Hypothetical protein rb 95.2 0.021 7.1E-07 56.1 6.0 44 182-228 2-45 (201)
265 2z43_A DNA repair and recombin 95.1 0.039 1.3E-06 58.7 8.2 56 205-261 107-166 (324)
266 1g5t_A COB(I)alamin adenosyltr 95.1 0.067 2.3E-06 51.4 8.9 117 206-324 29-163 (196)
267 1odf_A YGR205W, hypothetical 3 95.1 0.098 3.3E-06 54.4 10.9 81 203-283 29-117 (290)
268 1pgv_A TMD-1, tropomodulin TMD 95.1 0.029 1E-06 54.1 6.3 67 587-656 37-109 (197)
269 1cr0_A DNA primase/helicase; R 95.0 0.07 2.4E-06 56.0 9.4 23 206-228 36-58 (296)
270 3tqc_A Pantothenate kinase; bi 94.8 0.083 2.9E-06 55.5 9.4 101 180-284 69-171 (321)
271 2pze_A Cystic fibrosis transme 94.8 0.21 7.1E-06 49.9 11.9 23 206-228 35-57 (229)
272 2cbz_A Multidrug resistance-as 94.7 0.11 3.8E-06 52.2 9.8 23 206-228 32-54 (237)
273 1pgv_A TMD-1, tropomodulin TMD 94.7 0.039 1.3E-06 53.2 6.1 117 560-679 37-167 (197)
274 2px0_A Flagellar biosynthesis 94.7 0.074 2.5E-06 55.6 8.7 87 204-293 104-191 (296)
275 3c8u_A Fructokinase; YP_612366 94.5 0.028 9.7E-07 55.5 4.6 39 186-228 7-45 (208)
276 3bh0_A DNAB-like replicative h 94.3 0.26 9E-06 52.0 12.0 53 204-260 67-119 (315)
277 1gvn_B Zeta; postsegregational 94.1 0.043 1.5E-06 57.2 5.3 42 186-228 15-56 (287)
278 1zp6_A Hypothetical protein AT 94.1 0.031 1.1E-06 54.2 4.0 25 204-228 8-32 (191)
279 3nbx_X ATPase RAVA; AAA+ ATPas 94.0 0.043 1.5E-06 61.7 5.4 42 179-228 23-64 (500)
280 1qhx_A CPT, protein (chloramph 94.0 0.024 8.2E-07 54.4 2.8 23 206-228 4-26 (178)
281 3hws_A ATP-dependent CLP prote 93.8 0.043 1.5E-06 59.6 4.9 50 179-228 16-74 (363)
282 1ly1_A Polynucleotide kinase; 93.8 0.032 1.1E-06 53.6 3.3 22 206-227 3-24 (181)
283 1sky_E F1-ATPase, F1-ATP synth 93.8 0.1 3.5E-06 57.4 7.6 87 207-295 153-256 (473)
284 3vaa_A Shikimate kinase, SK; s 93.7 0.03 1E-06 54.9 3.1 24 205-228 25-48 (199)
285 2p5t_B PEZT; postsegregational 93.7 0.049 1.7E-06 55.7 4.8 43 185-228 13-55 (253)
286 3kb2_A SPBC2 prophage-derived 93.7 0.031 1.1E-06 53.2 3.0 22 207-228 3-24 (173)
287 3uie_A Adenylyl-sulfate kinase 93.6 0.04 1.4E-06 54.0 3.7 25 204-228 24-48 (200)
288 3ice_A Transcription terminati 93.6 0.08 2.7E-06 56.3 6.0 99 187-294 161-271 (422)
289 2pjz_A Hypothetical protein ST 93.6 0.3 1E-05 49.8 10.4 22 207-228 32-53 (263)
290 3lda_A DNA repair protein RAD5 93.5 0.21 7.1E-06 54.4 9.5 56 205-261 178-237 (400)
291 4a1f_A DNAB helicase, replicat 93.5 0.18 6E-06 53.4 8.7 52 206-261 47-98 (338)
292 2ga8_A Hypothetical 39.9 kDa p 93.5 0.074 2.5E-06 56.2 5.6 46 181-228 2-47 (359)
293 2rhm_A Putative kinase; P-loop 93.4 0.049 1.7E-06 52.9 4.0 25 204-228 4-28 (193)
294 3dm5_A SRP54, signal recogniti 93.3 0.52 1.8E-05 51.6 12.2 25 204-228 99-123 (443)
295 1kgd_A CASK, peripheral plasma 93.3 0.042 1.4E-06 52.8 3.2 23 206-228 6-28 (180)
296 1kag_A SKI, shikimate kinase I 93.2 0.034 1.2E-06 53.0 2.4 23 206-228 5-27 (173)
297 3trf_A Shikimate kinase, SK; a 93.2 0.038 1.3E-06 53.3 2.8 24 205-228 5-28 (185)
298 2orw_A Thymidine kinase; TMTK, 93.2 0.014 4.8E-07 56.3 -0.4 107 206-323 4-112 (184)
299 1knq_A Gluconate kinase; ALFA/ 93.2 0.055 1.9E-06 51.6 3.9 25 204-228 7-31 (175)
300 1nks_A Adenylate kinase; therm 93.1 0.05 1.7E-06 52.8 3.4 23 206-228 2-24 (194)
301 3upu_A ATP-dependent DNA helic 93.0 0.11 3.8E-06 58.3 6.7 22 207-228 47-68 (459)
302 4eun_A Thermoresistant glucoki 93.0 0.046 1.6E-06 53.6 3.1 25 204-228 28-52 (200)
303 3rfe_A Platelet glycoprotein I 93.0 0.092 3.1E-06 47.1 4.8 51 625-679 12-65 (130)
304 1ex7_A Guanylate kinase; subst 93.0 0.044 1.5E-06 52.6 2.7 22 207-228 3-24 (186)
305 3t61_A Gluconokinase; PSI-biol 93.0 0.041 1.4E-06 54.0 2.6 24 205-228 18-41 (202)
306 1vma_A Cell division protein F 92.9 0.27 9.2E-06 51.4 9.0 25 204-228 103-127 (306)
307 4gp7_A Metallophosphoesterase; 92.9 0.049 1.7E-06 51.8 3.0 24 204-227 8-31 (171)
308 2qt1_A Nicotinamide riboside k 92.9 0.066 2.3E-06 52.7 4.0 25 204-228 20-44 (207)
309 1zuh_A Shikimate kinase; alpha 92.8 0.047 1.6E-06 51.7 2.8 25 204-228 6-30 (168)
310 1uf9_A TT1252 protein; P-loop, 92.8 0.064 2.2E-06 52.6 3.8 26 203-228 6-31 (203)
311 3asz_A Uridine kinase; cytidin 92.8 0.064 2.2E-06 53.0 3.8 25 204-228 5-29 (211)
312 2ffh_A Protein (FFH); SRP54, s 92.8 0.3 1E-05 53.4 9.4 25 204-228 97-121 (425)
313 2bdt_A BH3686; alpha-beta prot 92.8 0.058 2E-06 52.2 3.4 22 206-227 3-24 (189)
314 3tau_A Guanylate kinase, GMP k 92.8 0.055 1.9E-06 53.4 3.2 25 204-228 7-31 (208)
315 3iij_A Coilin-interacting nucl 92.7 0.048 1.6E-06 52.4 2.6 24 205-228 11-34 (180)
316 3fwy_A Light-independent proto 92.7 0.063 2.1E-06 56.6 3.6 26 203-228 46-71 (314)
317 3tr0_A Guanylate kinase, GMP k 92.6 0.06 2.1E-06 52.9 3.4 23 206-228 8-30 (205)
318 3umf_A Adenylate kinase; rossm 92.6 0.064 2.2E-06 52.9 3.4 26 203-228 27-52 (217)
319 1tev_A UMP-CMP kinase; ploop, 92.6 0.063 2.2E-06 52.2 3.3 24 205-228 3-26 (196)
320 2qor_A Guanylate kinase; phosp 92.5 0.051 1.7E-06 53.4 2.6 25 204-228 11-35 (204)
321 1ukz_A Uridylate kinase; trans 92.5 0.072 2.4E-06 52.3 3.7 25 204-228 14-38 (203)
322 1kht_A Adenylate kinase; phosp 92.5 0.057 2E-06 52.3 3.0 23 206-228 4-26 (192)
323 2c95_A Adenylate kinase 1; tra 92.5 0.064 2.2E-06 52.2 3.3 24 205-228 9-32 (196)
324 1y63_A LMAJ004144AAA protein; 92.5 0.062 2.1E-06 51.8 3.2 25 204-228 9-33 (184)
325 2yvu_A Probable adenylyl-sulfa 92.5 0.079 2.7E-06 51.1 3.9 25 204-228 12-36 (186)
326 2ze6_A Isopentenyl transferase 92.5 0.059 2E-06 55.0 3.1 23 206-228 2-24 (253)
327 2if2_A Dephospho-COA kinase; a 92.4 0.063 2.2E-06 52.7 3.2 21 207-227 3-23 (204)
328 3a00_A Guanylate kinase, GMP k 92.4 0.049 1.7E-06 52.6 2.3 23 206-228 2-24 (186)
329 2jaq_A Deoxyguanosine kinase; 92.4 0.06 2.1E-06 52.8 3.0 22 207-228 2-23 (205)
330 2j41_A Guanylate kinase; GMP, 92.4 0.064 2.2E-06 52.7 3.2 24 205-228 6-29 (207)
331 1xjc_A MOBB protein homolog; s 92.4 0.063 2.2E-06 50.5 2.9 25 204-228 3-27 (169)
332 1uj2_A Uridine-cytidine kinase 92.3 0.071 2.4E-06 54.4 3.5 26 203-228 20-45 (252)
333 3a4m_A L-seryl-tRNA(SEC) kinas 92.3 0.072 2.5E-06 54.7 3.5 24 205-228 4-27 (260)
334 1via_A Shikimate kinase; struc 92.2 0.056 1.9E-06 51.6 2.4 22 207-228 6-27 (175)
335 2xxa_A Signal recognition part 92.2 0.83 2.8E-05 50.3 12.1 43 186-228 78-123 (433)
336 1jjv_A Dephospho-COA kinase; P 92.2 0.075 2.6E-06 52.3 3.4 22 206-227 3-24 (206)
337 1qf9_A UMP/CMP kinase, protein 92.2 0.094 3.2E-06 50.8 4.1 25 204-228 5-29 (194)
338 4akg_A Glutathione S-transfera 92.1 1.3 4.4E-05 59.8 15.7 227 208-488 1270-1537(2695)
339 1fx0_B ATP synthase beta chain 92.1 0.35 1.2E-05 53.3 8.7 101 189-295 154-277 (498)
340 1g8p_A Magnesium-chelatase 38 92.1 0.063 2.1E-06 57.9 2.9 45 178-228 24-68 (350)
341 2hf9_A Probable hydrogenase ni 92.1 0.12 4.3E-06 51.5 5.0 25 204-228 37-61 (226)
342 1cke_A CK, MSSA, protein (cyti 92.1 0.069 2.4E-06 53.4 3.0 23 206-228 6-28 (227)
343 1lvg_A Guanylate kinase, GMP k 92.0 0.059 2E-06 52.6 2.4 23 206-228 5-27 (198)
344 2bbw_A Adenylate kinase 4, AK4 92.0 0.075 2.6E-06 54.0 3.2 24 205-228 27-50 (246)
345 3aez_A Pantothenate kinase; tr 92.0 0.088 3E-06 55.4 3.8 25 204-228 89-113 (312)
346 2ck3_D ATP synthase subunit be 91.9 0.54 1.9E-05 51.6 9.9 65 189-259 142-207 (482)
347 2iyv_A Shikimate kinase, SK; t 91.9 0.055 1.9E-06 52.1 2.0 22 207-228 4-25 (184)
348 2plr_A DTMP kinase, probable t 91.9 0.086 3E-06 52.0 3.5 24 205-228 4-27 (213)
349 3tlx_A Adenylate kinase 2; str 91.9 0.13 4.5E-06 52.0 4.9 25 204-228 28-52 (243)
350 3cm0_A Adenylate kinase; ATP-b 91.9 0.082 2.8E-06 51.0 3.2 23 206-228 5-27 (186)
351 2cdn_A Adenylate kinase; phosp 91.9 0.086 2.9E-06 51.6 3.4 25 204-228 19-43 (201)
352 2bwj_A Adenylate kinase 5; pho 91.9 0.078 2.7E-06 51.7 3.1 23 206-228 13-35 (199)
353 3ney_A 55 kDa erythrocyte memb 91.8 0.083 2.8E-06 51.1 3.0 25 204-228 18-42 (197)
354 2grj_A Dephospho-COA kinase; T 91.8 0.093 3.2E-06 50.8 3.4 25 204-228 11-35 (192)
355 3rfe_A Platelet glycoprotein I 91.8 0.13 4.5E-06 46.1 4.2 43 612-657 24-67 (130)
356 1htw_A HI0065; nucleotide-bind 91.8 0.11 3.7E-06 48.5 3.7 25 204-228 32-56 (158)
357 2yhs_A FTSY, cell division pro 91.7 0.42 1.4E-05 53.0 8.8 43 203-248 291-333 (503)
358 1e6c_A Shikimate kinase; phosp 91.7 0.065 2.2E-06 50.9 2.2 22 207-228 4-25 (173)
359 2pez_A Bifunctional 3'-phospho 91.7 0.099 3.4E-06 50.0 3.5 25 204-228 4-28 (179)
360 4a74_A DNA repair and recombin 91.7 0.24 8.1E-06 49.5 6.5 46 204-249 24-73 (231)
361 1q57_A DNA primase/helicase; d 91.7 0.46 1.6E-05 54.0 9.6 55 204-261 241-295 (503)
362 3e1s_A Exodeoxyribonuclease V, 91.6 0.34 1.1E-05 55.7 8.4 103 206-321 205-313 (574)
363 2pt5_A Shikimate kinase, SK; a 91.6 0.086 2.9E-06 49.8 2.9 22 207-228 2-23 (168)
364 1rj9_A FTSY, signal recognitio 91.6 0.094 3.2E-06 54.9 3.4 25 204-228 101-125 (304)
365 2jeo_A Uridine-cytidine kinase 91.6 0.11 3.7E-06 52.8 3.8 25 204-228 24-48 (245)
366 2wsm_A Hydrogenase expression/ 91.5 0.15 5.2E-06 50.6 4.8 41 182-228 13-53 (221)
367 2vli_A Antibiotic resistance p 91.5 0.06 2.1E-06 51.7 1.8 24 205-228 5-28 (183)
368 1znw_A Guanylate kinase, GMP k 91.5 0.093 3.2E-06 51.7 3.2 23 206-228 21-43 (207)
369 1sq5_A Pantothenate kinase; P- 91.5 0.22 7.5E-06 52.4 6.2 41 186-228 63-103 (308)
370 1nn5_A Similar to deoxythymidy 91.4 0.1 3.5E-06 51.6 3.4 24 205-228 9-32 (215)
371 1g41_A Heat shock protein HSLU 91.4 0.17 5.7E-06 55.7 5.2 51 178-228 15-73 (444)
372 2r6a_A DNAB helicase, replicat 91.4 0.37 1.3E-05 53.9 8.3 51 205-258 203-253 (454)
373 2pbr_A DTMP kinase, thymidylat 91.3 0.095 3.2E-06 50.9 3.0 22 207-228 2-23 (195)
374 3kl4_A SRP54, signal recogniti 91.3 1 3.6E-05 49.2 11.5 25 204-228 96-120 (433)
375 3l0o_A Transcription terminati 91.3 0.83 2.8E-05 48.5 10.1 55 186-246 161-216 (427)
376 2wwf_A Thymidilate kinase, put 91.3 0.1 3.5E-06 51.5 3.2 24 205-228 10-33 (212)
377 3e70_C DPA, signal recognition 91.3 0.5 1.7E-05 49.9 8.7 25 204-228 128-152 (328)
378 2f6r_A COA synthase, bifunctio 91.2 0.13 4.4E-06 53.4 4.0 23 204-226 74-96 (281)
379 1z6g_A Guanylate kinase; struc 91.2 0.09 3.1E-06 52.2 2.6 24 205-228 23-46 (218)
380 1aky_A Adenylate kinase; ATP:A 91.2 0.1 3.5E-06 51.9 3.1 24 205-228 4-27 (220)
381 1zd8_A GTP:AMP phosphotransfer 91.1 0.1 3.5E-06 52.2 3.1 24 205-228 7-30 (227)
382 4e22_A Cytidylate kinase; P-lo 91.1 0.11 3.6E-06 53.1 3.2 24 205-228 27-50 (252)
383 2f1r_A Molybdopterin-guanine d 91.0 0.08 2.7E-06 50.1 2.0 23 206-228 3-25 (171)
384 2ged_A SR-beta, signal recogni 91.0 0.18 6.3E-06 48.6 4.8 25 204-228 47-71 (193)
385 3p32_A Probable GTPase RV1496/ 91.0 0.22 7.7E-06 53.6 5.8 39 186-228 64-102 (355)
386 3llm_A ATP-dependent RNA helic 91.0 0.96 3.3E-05 45.3 10.2 88 207-295 78-187 (235)
387 1m7g_A Adenylylsulfate kinase; 91.0 0.13 4.4E-06 50.8 3.5 25 204-228 24-48 (211)
388 1s96_A Guanylate kinase, GMP k 90.9 0.12 4.1E-06 51.3 3.2 25 204-228 15-39 (219)
389 1gtv_A TMK, thymidylate kinase 90.9 0.069 2.4E-06 52.8 1.5 22 207-228 2-23 (214)
390 2j37_W Signal recognition part 90.8 1.1 3.8E-05 50.1 11.3 26 203-228 99-124 (504)
391 2i3b_A HCR-ntpase, human cance 90.8 0.1 3.5E-06 50.4 2.6 22 207-228 3-24 (189)
392 1zak_A Adenylate kinase; ATP:A 90.8 0.11 3.6E-06 51.9 2.8 24 205-228 5-28 (222)
393 2z0h_A DTMP kinase, thymidylat 90.8 0.26 8.8E-06 47.8 5.6 22 207-228 2-23 (197)
394 3tif_A Uncharacterized ABC tra 90.7 0.17 5.7E-06 50.9 4.1 33 206-241 32-64 (235)
395 3b9q_A Chloroplast SRP recepto 90.7 0.14 4.8E-06 53.6 3.7 25 204-228 99-123 (302)
396 3fb4_A Adenylate kinase; psych 90.7 0.11 3.9E-06 51.4 2.8 22 207-228 2-23 (216)
397 1vht_A Dephospho-COA kinase; s 90.7 0.14 4.9E-06 50.7 3.6 23 205-227 4-26 (218)
398 2q6t_A DNAB replication FORK h 90.6 0.78 2.7E-05 51.0 10.0 54 205-261 200-253 (444)
399 2v54_A DTMP kinase, thymidylat 90.6 0.13 4.5E-06 50.3 3.3 23 206-228 5-27 (204)
400 3bgw_A DNAB-like replicative h 90.6 1.1 3.7E-05 49.7 11.0 52 205-260 197-248 (444)
401 1j8m_F SRP54, signal recogniti 90.6 0.58 2E-05 48.7 8.3 24 205-228 98-121 (297)
402 3vr4_D V-type sodium ATPase su 90.6 0.23 7.8E-06 54.2 5.3 86 207-294 153-258 (465)
403 3dl0_A Adenylate kinase; phosp 90.4 0.12 4.2E-06 51.1 2.8 22 207-228 2-23 (216)
404 3nwj_A ATSK2; P loop, shikimat 90.4 0.1 3.5E-06 52.8 2.2 23 206-228 49-71 (250)
405 3gfo_A Cobalt import ATP-bindi 90.3 0.18 6.2E-06 51.8 4.1 23 206-228 35-57 (275)
406 2onk_A Molybdate/tungstate ABC 90.3 0.14 4.7E-06 51.6 3.1 23 206-228 25-47 (240)
407 3b85_A Phosphate starvation-in 90.2 0.2 7E-06 49.1 4.1 22 207-228 24-45 (208)
408 2pcj_A ABC transporter, lipopr 90.1 0.15 5E-06 50.9 3.1 23 206-228 31-53 (224)
409 1np6_A Molybdopterin-guanine d 90.1 0.15 5E-06 48.4 2.9 25 204-228 5-29 (174)
410 1b0u_A Histidine permease; ABC 90.1 0.2 6.8E-06 51.2 4.1 33 206-241 33-65 (262)
411 2ehv_A Hypothetical protein PH 90.0 0.15 5.1E-06 51.8 3.2 23 205-227 30-52 (251)
412 3be4_A Adenylate kinase; malar 90.0 0.13 4.5E-06 51.0 2.6 23 206-228 6-28 (217)
413 4g1u_C Hemin import ATP-bindin 89.8 0.23 7.7E-06 50.9 4.3 33 206-241 38-70 (266)
414 1yrb_A ATP(GTP)binding protein 89.8 0.21 7.3E-06 51.1 4.2 26 203-228 12-37 (262)
415 2og2_A Putative signal recogni 89.7 0.19 6.4E-06 53.8 3.7 25 204-228 156-180 (359)
416 3lnc_A Guanylate kinase, GMP k 89.7 0.11 3.7E-06 52.2 1.8 23 206-228 28-51 (231)
417 3ake_A Cytidylate kinase; CMP 89.7 0.16 5.5E-06 49.8 3.0 22 207-228 4-25 (208)
418 2olj_A Amino acid ABC transpor 89.6 0.23 7.8E-06 50.7 4.1 23 206-228 51-73 (263)
419 3d3q_A TRNA delta(2)-isopenten 89.5 0.17 6E-06 53.3 3.2 23 206-228 8-30 (340)
420 3a8t_A Adenylate isopentenyltr 89.5 0.21 7.4E-06 52.4 3.9 25 204-228 39-63 (339)
421 3r20_A Cytidylate kinase; stru 89.5 0.17 5.8E-06 50.4 3.0 24 205-228 9-32 (233)
422 2ff7_A Alpha-hemolysin translo 89.5 0.24 8.1E-06 50.2 4.1 23 206-228 36-58 (247)
423 1e4v_A Adenylate kinase; trans 89.4 0.18 6.2E-06 49.8 3.2 22 207-228 2-23 (214)
424 1oix_A RAS-related protein RAB 89.4 0.19 6.5E-06 48.6 3.2 24 205-228 29-52 (191)
425 1mv5_A LMRA, multidrug resista 89.4 0.29 9.8E-06 49.4 4.7 25 204-228 27-51 (243)
426 1vpl_A ABC transporter, ATP-bi 89.4 0.24 8.3E-06 50.3 4.1 23 206-228 42-64 (256)
427 3k1j_A LON protease, ATP-depen 89.4 0.23 8E-06 57.8 4.5 43 178-228 41-83 (604)
428 3sr0_A Adenylate kinase; phosp 89.3 0.17 5.9E-06 49.5 2.8 22 207-228 2-23 (206)
429 3cmu_A Protein RECA, recombina 89.3 0.54 1.9E-05 61.0 8.0 84 204-294 1426-1515(2050)
430 2wji_A Ferrous iron transport 89.3 0.22 7.6E-06 46.7 3.5 23 206-228 4-26 (165)
431 2ixe_A Antigen peptide transpo 89.2 0.25 8.5E-06 50.8 4.1 23 206-228 46-68 (271)
432 2xb4_A Adenylate kinase; ATP-b 89.2 0.18 6.2E-06 50.2 3.0 22 207-228 2-23 (223)
433 1zu4_A FTSY; GTPase, signal re 89.1 0.22 7.5E-06 52.5 3.7 25 204-228 104-128 (320)
434 3zvl_A Bifunctional polynucleo 89.1 0.19 6.5E-06 55.4 3.3 26 203-228 256-281 (416)
435 1ak2_A Adenylate kinase isoenz 89.0 0.2 7E-06 50.2 3.2 24 205-228 16-39 (233)
436 1ji0_A ABC transporter; ATP bi 89.0 0.19 6.5E-06 50.7 2.9 23 206-228 33-55 (240)
437 1sgw_A Putative ABC transporte 89.0 0.16 5.6E-06 50.0 2.4 23 206-228 36-58 (214)
438 2zej_A Dardarin, leucine-rich 88.9 0.18 6.3E-06 48.3 2.7 22 207-228 4-25 (184)
439 3crm_A TRNA delta(2)-isopenten 88.9 0.2 6.8E-06 52.5 3.1 24 205-228 5-28 (323)
440 2d2e_A SUFC protein; ABC-ATPas 88.9 0.21 7.1E-06 50.7 3.2 23 206-228 30-52 (250)
441 2yz2_A Putative ABC transporte 88.9 0.27 9.3E-06 50.3 4.1 23 206-228 34-56 (266)
442 3exa_A TRNA delta(2)-isopenten 88.8 0.24 8.1E-06 51.3 3.5 24 205-228 3-26 (322)
443 1g6h_A High-affinity branched- 88.8 0.2 6.7E-06 51.2 2.9 23 206-228 34-56 (257)
444 2vp4_A Deoxynucleoside kinase; 88.8 0.23 7.8E-06 49.7 3.4 26 203-228 18-43 (230)
445 2dr3_A UPF0273 protein PH0284; 88.8 0.29 1E-05 49.4 4.3 39 205-245 23-61 (247)
446 2dyk_A GTP-binding protein; GT 88.8 0.24 8.4E-06 45.9 3.4 23 206-228 2-24 (161)
447 4eaq_A DTMP kinase, thymidylat 88.7 0.42 1.4E-05 47.7 5.3 25 204-228 25-49 (229)
448 3cf2_A TER ATPase, transitiona 88.7 0.78 2.7E-05 54.4 8.3 100 176-295 475-581 (806)
449 2zu0_C Probable ATP-dependent 88.7 0.21 7.3E-06 51.2 3.2 23 206-228 47-69 (267)
450 1ltq_A Polynucleotide kinase; 88.7 0.22 7.5E-06 52.3 3.3 22 206-227 3-24 (301)
451 3end_A Light-independent proto 88.6 0.24 8.4E-06 52.1 3.6 41 202-244 38-78 (307)
452 1q3t_A Cytidylate kinase; nucl 88.5 0.23 7.8E-06 50.0 3.2 26 203-228 14-39 (236)
453 2r9v_A ATP synthase subunit al 88.4 0.73 2.5E-05 50.9 7.2 86 206-295 176-278 (515)
454 3foz_A TRNA delta(2)-isopenten 88.3 0.29 9.9E-06 50.6 3.8 25 204-228 9-33 (316)
455 3mfy_A V-type ATP synthase alp 88.3 1 3.5E-05 50.1 8.3 59 189-256 216-275 (588)
456 2qi9_C Vitamin B12 import ATP- 88.3 0.22 7.6E-06 50.3 2.9 23 206-228 27-49 (249)
457 2ghi_A Transport protein; mult 88.3 0.22 7.6E-06 50.8 2.9 23 206-228 47-69 (260)
458 2f9l_A RAB11B, member RAS onco 88.2 0.24 8.1E-06 48.2 3.0 24 205-228 5-28 (199)
459 3hjn_A DTMP kinase, thymidylat 88.2 0.66 2.2E-05 45.0 6.1 48 208-257 3-50 (197)
460 2nq2_C Hypothetical ABC transp 88.1 0.23 8E-06 50.4 2.9 23 206-228 32-54 (253)
461 1ls1_A Signal recognition part 88.1 0.28 9.7E-06 51.1 3.7 25 204-228 97-121 (295)
462 2ihy_A ABC transporter, ATP-bi 88.0 0.23 8E-06 51.2 2.9 23 206-228 48-70 (279)
463 3b5x_A Lipid A export ATP-bind 88.0 2.1 7.3E-05 49.3 11.4 24 205-228 369-392 (582)
464 3vkw_A Replicase large subunit 88.0 1.3 4.6E-05 48.2 9.0 105 202-322 158-268 (446)
465 2eyu_A Twitching motility prot 88.0 0.29 9.9E-06 49.9 3.6 25 204-228 24-48 (261)
466 2ce2_X GTPase HRAS; signaling 88.0 0.26 8.8E-06 45.9 3.0 22 207-228 5-26 (166)
467 2wjg_A FEOB, ferrous iron tran 88.0 0.3 1E-05 46.9 3.5 25 204-228 6-30 (188)
468 3sop_A Neuronal-specific septi 88.0 0.26 8.8E-06 50.6 3.2 22 207-228 4-25 (270)
469 2qe7_A ATP synthase subunit al 87.9 0.73 2.5E-05 50.8 6.8 98 189-295 151-265 (502)
470 2lkc_A Translation initiation 87.9 0.36 1.2E-05 45.7 4.0 25 204-228 7-31 (178)
471 2v3c_C SRP54, signal recogniti 87.8 0.32 1.1E-05 53.6 4.0 25 204-228 98-122 (432)
472 1a7j_A Phosphoribulokinase; tr 87.8 0.14 4.7E-06 53.4 1.0 25 204-228 4-28 (290)
473 3gqb_B V-type ATP synthase bet 87.7 0.43 1.5E-05 52.0 4.8 89 206-294 148-261 (464)
474 2v9p_A Replication protein E1; 87.7 0.27 9.2E-06 51.2 3.2 25 204-228 125-149 (305)
475 1svm_A Large T antigen; AAA+ f 87.7 0.44 1.5E-05 51.3 5.0 25 204-228 168-192 (377)
476 3cmu_A Protein RECA, recombina 87.7 0.84 2.9E-05 59.4 8.2 85 204-295 382-472 (2050)
477 1svi_A GTP-binding protein YSX 87.6 0.36 1.2E-05 46.6 3.9 25 204-228 22-46 (195)
478 1nlf_A Regulatory protein REPA 87.5 0.29 9.9E-06 50.7 3.3 23 206-228 31-53 (279)
479 2qmh_A HPR kinase/phosphorylas 87.5 0.3 1E-05 46.8 3.1 23 206-228 35-57 (205)
480 2ocp_A DGK, deoxyguanosine kin 87.5 0.33 1.1E-05 48.9 3.7 24 205-228 2-25 (241)
481 2nzj_A GTP-binding protein REM 87.4 0.29 9.9E-06 46.2 3.0 24 205-228 4-27 (175)
482 1w36_D RECD, exodeoxyribonucle 87.4 1.4 4.7E-05 51.2 9.2 41 206-246 165-206 (608)
483 1z2a_A RAS-related protein RAB 87.4 0.32 1.1E-05 45.4 3.3 24 205-228 5-28 (168)
484 1ny5_A Transcriptional regulat 87.4 1.4 5E-05 47.7 8.9 46 179-228 138-183 (387)
485 1fzq_A ADP-ribosylation factor 87.2 0.38 1.3E-05 45.9 3.7 25 204-228 15-39 (181)
486 1tf7_A KAIC; homohexamer, hexa 87.2 0.43 1.5E-05 54.4 4.8 24 205-228 281-304 (525)
487 1tq4_A IIGP1, interferon-induc 87.1 0.39 1.3E-05 52.3 4.1 24 204-227 68-91 (413)
488 3con_A GTPase NRAS; structural 87.0 0.29 1E-05 47.0 2.8 23 206-228 22-44 (190)
489 2gj8_A MNME, tRNA modification 87.0 0.4 1.4E-05 45.3 3.8 23 206-228 5-27 (172)
490 2r8r_A Sensor protein; KDPD, P 87.0 0.82 2.8E-05 44.9 5.9 105 206-324 7-127 (228)
491 3pqc_A Probable GTP-binding pr 86.9 0.41 1.4E-05 46.0 3.9 25 204-228 22-46 (195)
492 3fvq_A Fe(3+) IONS import ATP- 86.9 0.47 1.6E-05 50.6 4.5 23 206-228 31-53 (359)
493 3q72_A GTP-binding protein RAD 86.9 0.3 1E-05 45.6 2.8 22 207-228 4-25 (166)
494 3nh6_A ATP-binding cassette SU 86.8 0.25 8.7E-06 51.5 2.4 24 205-228 80-103 (306)
495 4edh_A DTMP kinase, thymidylat 86.7 0.86 2.9E-05 44.7 6.0 24 205-228 6-29 (213)
496 2c61_A A-type ATP synthase non 86.6 0.46 1.6E-05 52.1 4.3 88 206-293 153-258 (469)
497 3ld9_A DTMP kinase, thymidylat 86.6 0.88 3E-05 44.9 6.0 25 204-228 20-44 (223)
498 1nij_A Hypothetical protein YJ 86.6 0.31 1.1E-05 51.5 3.0 25 204-228 3-27 (318)
499 1u8z_A RAS-related protein RAL 86.5 0.33 1.1E-05 45.3 2.8 24 205-228 4-27 (168)
500 2o8b_B DNA mismatch repair pro 86.4 0.73 2.5E-05 56.6 6.4 21 205-225 789-809 (1022)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.3e-49 Score=465.04 Aligned_cols=316 Identities=18% Similarity=0.275 Sum_probs=258.9
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHc--cccccccccceEEEEcCCCC--CHHHHHHHH
Q 002115 181 FGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYN--NDGVKRNFEKRIWVCVSEPF--DEFRIARAI 256 (965)
Q Consensus 181 vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i 256 (965)
|||++++++|.++|.... +...++|+|+||||+||||||++||+ +.+++.+|+.++||++++.+ +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997542 33679999999999999999999998 67799999999999999985 899999999
Q ss_pred HHHhcCCCC-------CCCCHHHHHHHHHHHhCCc-eEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchHHHh
Q 002115 257 IESLTGSAS-------NFGEFQSLMQHIQECVEGK-KFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEIVAR 328 (965)
Q Consensus 257 ~~~l~~~~~-------~~~~~~~l~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 328 (965)
+++++.... +..+.+.+...+++.++++ ||||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999986521 2234567889999999996 9999999999854323332 17899999999999998
Q ss_pred hcC-CcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhhcCCCCHHHHHHHHhhh
Q 002115 329 CMR-STNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLLQSRNTEKEWQNILESE 407 (965)
Q Consensus 329 ~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~~ 407 (965)
.++ ...+|+|++|++++||+||.+++|+... ++.+++++++|+++|+|+||||+++|+.|+.+ +. +|...+.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHH
Confidence 876 4468999999999999999999876532 46788899999999999999999999999776 32 333444433
Q ss_pred hhhhhhhhhhhhhHHHHhhcCCcHhHHHHHh-----------HhcccCCCceecHHHHHHHHHhC--CccccCC-CCcHH
Q 002115 408 IWELEEVERGLLAPLLLSYNELPSKIKQCFT-----------YCAIFPKDYQIQKKELINLWMAQ--GYLSKKG-TKEME 473 (965)
Q Consensus 408 ~~~~~~~~~~i~~~l~~sy~~L~~~lk~cfl-----------~~~~fp~~~~i~~~~li~~w~ae--g~i~~~~-~~~~e 473 (965)
.+.. ...++.+++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+.... +...+
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 3322 2356889999999999999999999 999999999999 8999999 9998776 66788
Q ss_pred HHHHHHHHHHHhCCCccccccCCCCCeeEEEeChhHHHHHHHhhcccee
Q 002115 474 DIGEEYFNILASRSFFQDFRRYGLGENYVCKMHDIVHDFAQFLCRNECF 522 (965)
Q Consensus 474 ~~~~~~l~~L~~~sl~~~~~~~~~~~~~~~~~Hdlv~~~a~~~~~~e~~ 522 (965)
++++ ||++|+++||+++...+ ...+|+|||+||++|+.++.++++
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 8888 99999999999986543 345799999999999999887764
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=9.1e-40 Score=382.15 Aligned_cols=286 Identities=19% Similarity=0.181 Sum_probs=230.0
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccc-eEEEEcCCCCCHHHHHHHHH
Q 002115 179 EIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEK-RIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~ 257 (965)
..|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++||++++.++...++..|+
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 35999999999999997532 4679999999999999999999998778999986 89999999999988888887
Q ss_pred HHhcCCC------CC-----CCCHHHHHHHHHHHh---CCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecc
Q 002115 258 ESLTGSA------SN-----FGEFQSLMQHIQECV---EGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRK 323 (965)
Q Consensus 258 ~~l~~~~------~~-----~~~~~~l~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 323 (965)
+.+.... .+ ..+.+.+...+++.+ .+||+||||||||+. +.|+.+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccC
Confidence 7543210 01 113455666777765 789999999999983 456543 2 68999999999
Q ss_pred hHHHhhcCCcceEeCC------CCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhhcCCC-C
Q 002115 324 EIVARCMRSTNVIYVN------VLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLLQSRN-T 396 (965)
Q Consensus 324 ~~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~~-~ 396 (965)
+.++..+.....+.++ +|+++|||+||.+.. +... .++..+| |+|+||||+++|+.|+.+. +
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~~-------eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRP-------QDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCCT-------TTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCCH-------HHHHHHH---hCCCHHHHHHHHHHHhCCCCC
Confidence 9988755444566777 999999999999984 3221 1123333 9999999999999999875 6
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhHHHHhhcCCcHhH-HHHHhHhcccCCCceecHHHHHHHHHhCCccccCCCCcHHHH
Q 002115 397 EKEWQNILESEIWELEEVERGLLAPLLLSYNELPSKI-KQCFTYCAIFPKDYQIQKKELINLWMAQGYLSKKGTKEMEDI 475 (965)
Q Consensus 397 ~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~l-k~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e~~ 475 (965)
.++|... ....+..++.+||+.||++. |.||+|||+||+++.|+++.++.+|+++| ++.
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eed 403 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSD 403 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHH
T ss_pred HHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHH
Confidence 7888653 13468999999999999999 99999999999999999999999999987 145
Q ss_pred HHHHHHHHHhCCCccccccCCCCCeeEEEeChhHHHHHH
Q 002115 476 GEEYFNILASRSFFQDFRRYGLGENYVCKMHDIVHDFAQ 514 (965)
Q Consensus 476 ~~~~l~~L~~~sl~~~~~~~~~~~~~~~~~Hdlv~~~a~ 514 (965)
++.+|++|+++|||+.. +...+|+|||++++++.
T Consensus 404 Ae~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHhc
Confidence 88999999999999973 22357999999999653
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-37 Score=404.98 Aligned_cols=313 Identities=21% Similarity=0.308 Sum_probs=250.4
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccc-cccc-cceEEEEcCCCCC--H
Q 002115 174 SIDESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGV-KRNF-EKRIWVCVSEPFD--E 249 (965)
Q Consensus 174 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~ 249 (965)
+...+.||||++++++|.++|.... ...++|+|+||||+||||||+++|++.+. +.+| +.++||++++..+ .
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 195 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGL 195 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHH
Confidence 3455679999999999999997543 36789999999999999999999998543 4556 5677999998544 3
Q ss_pred HHHHHHHHHHhcCCC----CCCCCHHHHHHHHHHHhCCc--eEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecc
Q 002115 250 FRIARAIIESLTGSA----SNFGEFQSLMQHIQECVEGK--KFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRK 323 (965)
Q Consensus 250 ~~~~~~i~~~l~~~~----~~~~~~~~l~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 323 (965)
...+..++..+.... ....+.+.+...++..+.++ ||||||||||+.. .|.. ..+||+||||||+
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--~~~~-------~~~~~~ilvTtR~ 266 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--VLKA-------FDNQCQILLTTRD 266 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--HHTT-------TCSSCEEEEEESS
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--HHHh-------hcCCCEEEEEcCC
Confidence 444667777776543 22356788999999999877 9999999999742 3333 2578999999999
Q ss_pred hHHHhh-cCCcceEeCCC-CChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhhcCCCCHHHHH
Q 002115 324 EIVARC-MRSTNVIYVNV-LSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLLQSRNTEKEWQ 401 (965)
Q Consensus 324 ~~v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~ 401 (965)
+.++.. ++....+.+.+ |+++++|+||...++... +.+++++++|+++|+|+||||+++|++|+.+. ..|.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~ 339 (1249)
T 3sfz_A 267 KSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWA 339 (1249)
T ss_dssp TTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHH
T ss_pred HHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHH
Confidence 999854 45677899996 999999999999885332 23345689999999999999999999998875 3576
Q ss_pred HHHhhhhhhh--------hhhhhhhhhHHHHhhcCCcHhHHHHHhHhcccCCCceecHHHHHHHHHhCCccccCCCCcHH
Q 002115 402 NILESEIWEL--------EEVERGLLAPLLLSYNELPSKIKQCFTYCAIFPKDYQIQKKELINLWMAQGYLSKKGTKEME 473 (965)
Q Consensus 402 ~~l~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~lk~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e 473 (965)
..++...... ......+..++.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ +
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~ 408 (1249)
T 3sfz_A 340 YYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------T 408 (1249)
T ss_dssp HHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------H
T ss_pred HHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------H
Confidence 6665432221 11124689999999999999999999999999999999999999999765 3
Q ss_pred HHHHHHHHHHHhCCCccccccCCCCCeeEEEeChhHHHHHHHhhccc
Q 002115 474 DIGEEYFNILASRSFFQDFRRYGLGENYVCKMHDIVHDFAQFLCRNE 520 (965)
Q Consensus 474 ~~~~~~l~~L~~~sl~~~~~~~~~~~~~~~~~Hdlv~~~a~~~~~~e 520 (965)
+.++.++++|+++||++... .+...+|+|||+||++++..+.++
T Consensus 409 ~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 409 EEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 67899999999999998653 345567999999999999987766
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=343.06 Aligned_cols=306 Identities=22% Similarity=0.310 Sum_probs=235.2
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccc-cccc-cceEEEEcCCCCCHHHHH
Q 002115 176 DESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGV-KRNF-EKRIWVCVSEPFDEFRIA 253 (965)
Q Consensus 176 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~ 253 (965)
.++.||||++++++|.++|.... +..++|+|+|+||+||||||++++++..+ +.+| +.++||+++.. +...++
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHH
Confidence 34579999999999999997532 35789999999999999999999998655 7889 57999999875 444444
Q ss_pred HHH---HHHhcCC----CCCCCCHHHHHHHHHHHhCC--ceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecch
Q 002115 254 RAI---IESLTGS----ASNFGEFQSLMQHIQECVEG--KKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKE 324 (965)
Q Consensus 254 ~~i---~~~l~~~----~~~~~~~~~l~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 324 (965)
..+ +..++.. .....+.+.+...+...+.+ +++||||||+|+.. .+ ..+ .+|++||||||..
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~--~l----~~l---~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW--VL----KAF---DSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH--HH----HTT---CSSCEEEEEESCG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH--HH----HHh---cCCCeEEEECCCc
Confidence 444 3344421 12345667788888887765 79999999999742 22 222 5689999999999
Q ss_pred HHHhhcCCcceEeC---CCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhhcCCCCHHHHH
Q 002115 325 IVARCMRSTNVIYV---NVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLLQSRNTEKEWQ 401 (965)
Q Consensus 325 ~v~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~ 401 (965)
.++..+. ...+++ ++|+.+|+++||...++... ....+.+.+|+++|+|+|||+..+|+.++.+. ..|.
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~ 339 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWE 339 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHH
T ss_pred HHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHH
Confidence 8876543 234443 68999999999999886421 12234688999999999999999999998764 3577
Q ss_pred HHHhhhhhhh--------hhhhhhhhhHHHHhhcCCcHhHHHHHhHhcccCCCceecHHHHHHHHHhCCccccCCCCcHH
Q 002115 402 NILESEIWEL--------EEVERGLLAPLLLSYNELPSKIKQCFTYCAIFPKDYQIQKKELINLWMAQGYLSKKGTKEME 473 (965)
Q Consensus 402 ~~l~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~lk~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~e 473 (965)
.+++...... ......+..++..||+.||++.|.||++||+||+++.|+.+.+..+|.++ .
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~ 408 (591)
T 1z6t_A 340 YYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------T 408 (591)
T ss_dssp HHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------H
T ss_pred HHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------H
Confidence 7666433221 01124688899999999999999999999999999999999999999654 2
Q ss_pred HHHHHHHHHHHhCCCccccccCCCCCeeEEEeChhHHHHHHHhh
Q 002115 474 DIGEEYFNILASRSFFQDFRRYGLGENYVCKMHDIVHDFAQFLC 517 (965)
Q Consensus 474 ~~~~~~l~~L~~~sl~~~~~~~~~~~~~~~~~Hdlv~~~a~~~~ 517 (965)
+.+..++.+|+++||++... ++....|+||++++++++...
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhh
Confidence 45788999999999998543 234567999999999998874
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=1.1e-28 Score=301.77 Aligned_cols=390 Identities=19% Similarity=0.178 Sum_probs=236.8
Q ss_pred ceEEEEEEEeCCCc-cchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhh-h
Q 002115 540 KKVLHLMLNLDGRH-LVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTN-I 617 (965)
Q Consensus 540 ~~~r~L~l~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~-i 617 (965)
..++++.+..+.+. .++..++..+++|+.|.+.++. +....|..|.++++|++|+|++|.++ ..+|.. +
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~L~~n~l~------~~ip~~~l 339 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH---FYGAVPPFFGSCSLLESLALSSNNFS------GELPMDTL 339 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE---EEECCCGGGGGCTTCCEEECCSSEEE------EECCHHHH
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc---CCCccchHHhcCCCccEEECCCCccc------CcCCHHHH
Confidence 46777777766654 3444444335788888887775 33446667788888888888855543 245544 7
Q ss_pred hccCCCcEEEeCCccCccccchhhhccC-CCcEEeccCcccccccCccccC--CCCccEeecCCCcccccccccCCCccc
Q 002115 618 ENLLHLKYLNLAHQREIEKLPETLCELY-NLEHLDISYCRNLRELPQGIGK--LRKLMYLENDGTYSLRYLPVGIGELIR 694 (965)
Q Consensus 618 ~~L~~Lr~L~L~~~~~i~~lp~~i~~L~-~L~~LdL~~~~~l~~lP~~i~~--L~~L~~L~l~~~~~~~~~p~~i~~l~~ 694 (965)
+++++|++|+|++|.+...+|..+.++. +|++|++++|.....+|..+.. +++|++|++++|.....+|..++++++
T Consensus 340 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~ 419 (768)
T 3rgz_A 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419 (768)
T ss_dssp TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTT
T ss_pred hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCC
Confidence 7788888888888874447777777776 7888888887755566666655 677888888877666677777778888
Q ss_pred ccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCC
Q 002115 695 LRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNE 774 (965)
Q Consensus 695 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 774 (965)
|+.|++..+......+..+..+++|+.|....+...+.++ ..+..+++|+.|++++|.+.+..
T Consensus 420 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-------~~~~~l~~L~~L~L~~N~l~~~~---------- 482 (768)
T 3rgz_A 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP-------QELMYVKTLETLILDFNDLTGEI---------- 482 (768)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC-------GGGGGCTTCCEEECCSSCCCSCC----------
T ss_pred CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC-------HHHcCCCCceEEEecCCcccCcC----------
Confidence 8888777766654344444444444444333333322333 34566777888888777654432
Q ss_pred hhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCCCCceE
Q 002115 775 EDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGVQSVKR 853 (965)
Q Consensus 775 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~~~l~~ 853 (965)
+..+..+++|+.|+|++|.+... +| .|+..+++|+.|+|++|.+.+.+|. ++++++|++|+|++|.-...
T Consensus 483 -------p~~l~~l~~L~~L~L~~N~l~~~-~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 483 -------PSGLSNCTNLNWISLSNNRLTGE-IP-KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp -------CGGGGGCTTCCEEECCSSCCCSC-CC-GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred -------CHHHhcCCCCCEEEccCCccCCc-CC-hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence 23455567777777777776642 45 6777777777777777777666665 77777777777776642212
Q ss_pred eCccccCCCC----------------------------------------------------------CCCCccccCCcc
Q 002115 854 VGNEFLGVES----------------------------------------------------------DTDGSSVIAFPK 875 (965)
Q Consensus 854 ~~~~~~~~~~----------------------------------------------------------~~~~~~~~~f~~ 875 (965)
++..+..... .........+++
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence 2221110000 000001123445
Q ss_pred cccccccccc-------------c-----ccccCcccccccccccCcccceEeeccCccCcCCCcCCCCCCCCCeEeEcC
Q 002115 876 LKQLRFDEMD-------------V-----LEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPDRLLQKTTLQALTIGE 937 (965)
Q Consensus 876 L~~L~l~~~~-------------~-----L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~ 937 (965)
|+.|+++++. . |..+.+.+.+|..++.+++|+.|+|++|.....+|..+..+++|++|++++
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence 5555544432 0 222335566788888888888888888886668888888888888888876
Q ss_pred Cc-----------------------chH----HhhccCCCCCCcccCCCCCccc
Q 002115 938 CP-----------------------ILE----ERCRKETGEDWPKIRHIPDVFI 964 (965)
Q Consensus 938 c~-----------------------~l~----~~~~~~~~~~~~~i~hip~i~i 964 (965)
|+ .+. ..|....+++|++++|+|.+.-
T Consensus 714 N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~~ 767 (768)
T 3rgz_A 714 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHHH 767 (768)
T ss_dssp SEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC---------------
T ss_pred CcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccCC
Confidence 63 111 2578889999999999998754
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=5e-27 Score=284.30 Aligned_cols=347 Identities=14% Similarity=0.178 Sum_probs=265.7
Q ss_pred ceEEEEEEEeCCCcc------------------chhhH-hhhcCceeEEEecccccccccccchHHhhcCCccceEEcCc
Q 002115 540 KKVLHLMLNLDGRHL------------------VSISI-WDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGV 600 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~------------------~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~ 600 (965)
.+++.|.+..+.+.. +|..+ |..+++|+.|.+.++. +...+|..|.++++|++|+|++
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~---l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP---NMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT---TCCSCCGGGGGCSSCCEEECTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC---CCccChHHHhCCCCCCEEECcC
Confidence 578999999998875 44443 4489999999999886 3345788899999999999997
Q ss_pred cc-ccccccchh-hHHhhhhccC-------CCcEEEeCCccCccccch--hhhccCCCcEEeccCcccccccCccccCCC
Q 002115 601 HS-LRLCENCIK-EVRTNIENLL-------HLKYLNLAHQREIEKLPE--TLCELYNLEHLDISYCRNLRELPQGIGKLR 669 (965)
Q Consensus 601 n~-l~~~~~~i~-~lp~~i~~L~-------~Lr~L~L~~~~~i~~lp~--~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~ 669 (965)
|. ++ . .+|..++++. +|++|+|++|. +..+|. .++++++|++|+|++|. +..+| .+..++
T Consensus 525 N~~ls------g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~ 595 (876)
T 4ecn_A 525 NRGIS------AAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNV 595 (876)
T ss_dssp CTTSC------HHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTS
T ss_pred CCCcc------cccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCC
Confidence 65 54 3 5788787776 99999999999 779999 99999999999999998 66999 899999
Q ss_pred CccEeecCCCcccccccccCCCccc-ccccCceEecCccCCCCCcccccc--CCcCCcceeeccCCCCCHhHHHHhhcc-
Q 002115 670 KLMYLENDGTYSLRYLPVGIGELIR-LRIVKEFVVGGGYDRACSLGSLKK--LNLLRYCRIHGLGDVSDAGEARRAELE- 745 (965)
Q Consensus 670 ~L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~l~~--L~~L~~l~~~~~~~~~~~~~~~~~~l~- 745 (965)
+|++|++++|. +..+|..+.++++ |+.|++..+.... .+..+..+.. |+.|....+...+.++.. ...+.
T Consensus 596 ~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l----~~~l~~ 669 (876)
T 4ecn_A 596 KLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNI----SCSMDD 669 (876)
T ss_dssp EESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTTCSSCEEEEECCSSCTTTTSSSC----SSCTTT
T ss_pred cceEEECcCCc-cccchHHHhhccccCCEEECcCCCCCc-CchhhhccccCCCCEEECcCCcCCCccccc----hhhhcc
Confidence 99999999995 4489999999999 9999999887763 3333333322 333333333222222210 01122
Q ss_pred -CCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHh-------hccCC
Q 002115 746 -KKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWIT-------SLTNL 817 (965)
Q Consensus 746 -~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~-------~l~~L 817 (965)
...+|+.|+|++|.+..... ..+..+++|+.|+|++|.+.. +|...+. ++++|
T Consensus 670 ~~~~~L~~L~Ls~N~L~~lp~-----------------~~~~~l~~L~~L~Ls~N~L~~--ip~~~~~~~~~~l~nl~~L 730 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQKFPT-----------------ELFATGSPISTIILSNNLMTS--IPENSLKPKDGNYKNTYLL 730 (876)
T ss_dssp CCCCCEEEEECCSSCCCSCCH-----------------HHHHTTCCCSEEECCSCCCSC--CCTTSSSCTTSCCTTGGGC
T ss_pred ccCCCcCEEEccCCcCCccCH-----------------HHHccCCCCCEEECCCCcCCc--cChHHhccccccccccCCc
Confidence 33589999999997653211 112357899999999999886 7733333 23499
Q ss_pred cEEEEecCCCCCCCCC-CC--CCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccccccccccccccccCccc
Q 002115 818 RVLSLFECRNCEHLPP-LG--KLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGT 894 (965)
Q Consensus 818 ~~L~L~~~~~~~~lp~-l~--~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~ 894 (965)
+.|+|++|.+. .+|. +. .+++|+.|+|++|. +..++.. +..+++|+.|+|++++.+..+.+.+
T Consensus 731 ~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~------------l~~L~~L~~L~Ls~N~~ls~N~l~~ 796 (876)
T 4ecn_A 731 TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC-FSSFPTQ------------PLNSSQLKAFGIRHQRDAEGNRILR 796 (876)
T ss_dssp CEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC-CSSCCCG------------GGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred cEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCC-CCccchh------------hhcCCCCCEEECCCCCCcccccccc
Confidence 99999999877 5665 65 99999999999865 2222221 3468999999999988788888888
Q ss_pred ccccccccCcccceEeeccCccCcCCCcCCCCCCCCCeEeEcCCcc
Q 002115 895 AINGEIMIMPRLSSLSIRRCPKLKALPDRLLQKTTLQALTIGECPI 940 (965)
Q Consensus 895 ~~~~~~~~~~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 940 (965)
.+|..+..+++|+.|+|++|.. ..+|..+. ++|+.|+|++||-
T Consensus 797 ~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 797 QWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred cChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence 8899999999999999999985 89998865 7999999999974
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=9e-27 Score=278.11 Aligned_cols=344 Identities=13% Similarity=0.149 Sum_probs=267.0
Q ss_pred ceEEEEEEEeCCCcc------------------chhhHhh--hcCceeEEEecccccccccccchHHhhcCCccceEEcC
Q 002115 540 KKVLHLMLNLDGRHL------------------VSISIWD--HVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLG 599 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~------------------~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~ 599 (965)
.+++.|.+..+.+.. +|. .+. ++++|++|.+.++. +...+|..|.++++|++|+|+
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCP---NLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCT---TCSSCCTTTTTCSSCCEEECT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCc---CCccChHHHhcCCCCCEEECc
Confidence 578999999998775 333 333 78999999999986 334578889999999999999
Q ss_pred ccc-ccccccchh-hHHhhhhcc------CCCcEEEeCCccCccccch--hhhccCCCcEEeccCcccccccCccccCCC
Q 002115 600 VHS-LRLCENCIK-EVRTNIENL------LHLKYLNLAHQREIEKLPE--TLCELYNLEHLDISYCRNLRELPQGIGKLR 669 (965)
Q Consensus 600 ~n~-l~~~~~~i~-~lp~~i~~L------~~Lr~L~L~~~~~i~~lp~--~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~ 669 (965)
+|. ++ . .+|..++++ ++|++|+|++|. +..+|. .++++++|++|++++|.....+| .+..++
T Consensus 282 ~n~~l~------~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 282 CNRGIS------GEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp TCTTSC------HHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred CCCCCc------cccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 665 54 3 688888887 999999999999 779999 99999999999999999444899 999999
Q ss_pred CccEeecCCCcccccccccCCCccc-ccccCceEecCccCCCCCccccc--cCCcCCcceeeccCCCCCHhHHHHhhcc-
Q 002115 670 KLMYLENDGTYSLRYLPVGIGELIR-LRIVKEFVVGGGYDRACSLGSLK--KLNLLRYCRIHGLGDVSDAGEARRAELE- 745 (965)
Q Consensus 670 ~L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~~l~~~~~~~~~~~~~~~~~~l~- 745 (965)
+|++|++++| .+..+|..++++++ |+.|++..+.... .+..+..+. +|+.|....+...+..+ ..+.
T Consensus 354 ~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p-------~~l~~ 424 (636)
T 4eco_A 354 KLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDG-------KNFDP 424 (636)
T ss_dssp EESEEECCSS-EEEECCTTSEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTT-------CSSCT
T ss_pred CCCEEECCCC-ccccccHhhhhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcch-------hhhcc
Confidence 9999999999 45599999999999 9999999888763 333333222 34433333332222222 2233
Q ss_pred ------CCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhc-----
Q 002115 746 ------KKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSL----- 814 (965)
Q Consensus 746 ------~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l----- 814 (965)
.+.+|+.|++++|.++.... ..+..+++|+.|+|++|.+.. +|..++...
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~-----------------~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~~~~~~~ 485 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQISKFPK-----------------ELFSTGSPLSSINLMGNMLTE--IPKNSLKDENENFK 485 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSCCCSCCT-----------------HHHHTTCCCSEEECCSSCCSB--CCSSSSEETTEECT
T ss_pred cccccccCCCCCEEECcCCccCcCCH-----------------HHHccCCCCCEEECCCCCCCC--cCHHHhcccccccc
Confidence 56789999999997653211 122347899999999999886 674444433
Q ss_pred --cCCcEEEEecCCCCCCCCC-CC--CCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccccccccccccccc
Q 002115 815 --TNLRVLSLFECRNCEHLPP-LG--KLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEE 889 (965)
Q Consensus 815 --~~L~~L~L~~~~~~~~lp~-l~--~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~ 889 (965)
++|+.|+|++|.+. .+|. +. .+++|+.|+|++|.- +.++.. +..+++|+.|+++++..+..
T Consensus 486 ~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l-~~ip~~------------~~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 486 NTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSF-SKFPTQ------------PLNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp TGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCC-SSCCCG------------GGGCSSCCEEECCSCBCTTC
T ss_pred ccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCC-CCcChh------------hhcCCCCCEEECCCCccccc
Confidence 39999999999887 5665 55 999999999999752 222222 33689999999998887777
Q ss_pred cCcccccccccccCcccceEeeccCccCcCCCcCCCCCCCCCeEeEcCCcc
Q 002115 890 WDFGTAINGEIMIMPRLSSLSIRRCPKLKALPDRLLQKTTLQALTIGECPI 940 (965)
Q Consensus 890 ~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 940 (965)
+.+.+.+|..+..+++|+.|+|++|.. ..+|..+. ++|++|++++||-
T Consensus 552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 552 NRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTT
T ss_pred CcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCC
Confidence 888888899999999999999999985 88998765 8999999999973
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=6.3e-27 Score=286.26 Aligned_cols=351 Identities=18% Similarity=0.149 Sum_probs=267.5
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhc-CCccceEEcCcccccccccchhhHHhhhh
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDK-LTCLRALTLGVHSLRLCENCIKEVRTNIE 618 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~-l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~ 618 (965)
.+++.+.+..+.+....+. . .+++|++|.+.++. +...+|..+.. +++|++|+|++|.++ ..+|..++
T Consensus 247 ~~L~~L~Ls~n~l~~~~~~-~-~l~~L~~L~L~~n~---l~~~ip~~~~~~~~~L~~L~Ls~n~l~------~~~p~~~~ 315 (768)
T 3rgz_A 247 TELKLLNISSNQFVGPIPP-L-PLKSLQYLSLAENK---FTGEIPDFLSGACDTLTGLDLSGNHFY------GAVPPFFG 315 (768)
T ss_dssp SSCCEEECCSSCCEESCCC-C-CCTTCCEEECCSSE---EEESCCCCSCTTCTTCSEEECCSSEEE------ECCCGGGG
T ss_pred CCCCEEECCCCcccCccCc-c-ccCCCCEEECcCCc---cCCccCHHHHhhcCcCCEEECcCCcCC------CccchHHh
Confidence 5788888888876532222 2 78999999999886 33335655655 499999999976654 36788899
Q ss_pred ccCCCcEEEeCCccCccccchh-hhccCCCcEEeccCcccccccCccccCCC-CccEeecCCCcccccccccCCC--ccc
Q 002115 619 NLLHLKYLNLAHQREIEKLPET-LCELYNLEHLDISYCRNLRELPQGIGKLR-KLMYLENDGTYSLRYLPVGIGE--LIR 694 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~LdL~~~~~l~~lP~~i~~L~-~L~~L~l~~~~~~~~~p~~i~~--l~~ 694 (965)
++++|++|+|++|.+.+.+|.. +.++++|++|++++|.....+|..+..++ +|++|++++|.....+|..+.. +++
T Consensus 316 ~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 395 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395 (768)
T ss_dssp GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCC
Confidence 9999999999999944489976 99999999999999995558999999987 9999999999877788888877 889
Q ss_pred ccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCC
Q 002115 695 LRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNE 774 (965)
Q Consensus 695 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 774 (965)
|+.|++..+......+..+..+++|+.|....+...+..+ ..+..+++|+.|+++.|.+.+..
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-------~~l~~l~~L~~L~L~~n~l~~~~---------- 458 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP-------SSLGSLSKLRDLKLWLNMLEGEI---------- 458 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC-------GGGGGCTTCCEEECCSSCCCSCC----------
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc-------HHHhcCCCCCEEECCCCcccCcC----------
Confidence 9999998887765445556666666655544444333444 46788899999999999765432
Q ss_pred hhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCCCCceE
Q 002115 775 EDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGVQSVKR 853 (965)
Q Consensus 775 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~~~l~~ 853 (965)
+..+..+++|+.|++++|.+... .| .++..+++|+.|+|++|.+.+.+|. ++.+++|++|+|++|.....
T Consensus 459 -------p~~~~~l~~L~~L~L~~N~l~~~-~p-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 529 (768)
T 3rgz_A 459 -------PQELMYVKTLETLILDFNDLTGE-IP-SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529 (768)
T ss_dssp -------CGGGGGCTTCCEEECCSSCCCSC-CC-GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred -------CHHHcCCCCceEEEecCCcccCc-CC-HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc
Confidence 34566788999999999998752 56 7899999999999999999888887 89999999999999874444
Q ss_pred eCccccCCCCCCCCccccCCccccccccccccc-----------------------------------------------
Q 002115 854 VGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDV----------------------------------------------- 886 (965)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~----------------------------------------------- 886 (965)
++..+. .+++|+.|++++|+-
T Consensus 530 ~p~~l~------------~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (768)
T 3rgz_A 530 IPAELG------------DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597 (768)
T ss_dssp CCGGGG------------GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECT
T ss_pred CCHHHc------------CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccc
Confidence 444332 466666666665431
Q ss_pred -----------------------------------------ccccCcccccccccccCcccceEeeccCccCcCCCcCCC
Q 002115 887 -----------------------------------------LEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPDRLL 925 (965)
Q Consensus 887 -----------------------------------------L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~l~ 925 (965)
|..+.+.+.+|..++.+++|+.|+|++|.....+|..+.
T Consensus 598 ~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 677 (768)
T 3rgz_A 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677 (768)
T ss_dssp TCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHh
Confidence 112223445677777788888888888876667787788
Q ss_pred CCCCCCeEeEcCCc
Q 002115 926 QKTTLQALTIGECP 939 (965)
Q Consensus 926 ~l~~L~~L~l~~c~ 939 (965)
.+++|+.|++++|.
T Consensus 678 ~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 678 DLRGLNILDLSSNK 691 (768)
T ss_dssp GCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCc
Confidence 88888888888775
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.1e-26 Score=277.48 Aligned_cols=367 Identities=16% Similarity=0.171 Sum_probs=263.2
Q ss_pred ceEEEEEEEeCCCcc-chhhHhhhcCceeEEEeccccc------------------------------------------
Q 002115 540 KKVLHLMLNLDGRHL-VSISIWDHVKRLRSLLVESYEY------------------------------------------ 576 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~-~~~~~~~~~~~Lr~L~l~~~~~------------------------------------------ 576 (965)
.+|+.|.+.+++..- ++.. +..+++|++|.++++..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~-l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEECGG-GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCChH-HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 478888888887753 4544 44999999999988742
Q ss_pred ---------------------------------ccccccchHHhhcCCccceEEcCccccccccc-----------chhh
Q 002115 577 ---------------------------------SWSSEVLPQLFDKLTCLRALTLGVHSLRLCEN-----------CIKE 612 (965)
Q Consensus 577 ---------------------------------~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~-----------~i~~ 612 (965)
+.+.. +|..|.++++|++|+|++|.++.... ....
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 12334 67789999999999999777651000 0011
Q ss_pred HHhhhh--ccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcc-ccc-ccCccccCC------CCccEeecCCCccc
Q 002115 613 VRTNIE--NLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCR-NLR-ELPQGIGKL------RKLMYLENDGTYSL 682 (965)
Q Consensus 613 lp~~i~--~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~-~l~-~lP~~i~~L------~~L~~L~l~~~~~~ 682 (965)
+|..++ ++++|++|+|++|.+.+.+|..++++++|++|++++|. ... .+|..++.+ ++|++|++++|..
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l- 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL- 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC-
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC-
Confidence 899988 99999999999999788899999999999999999997 444 689888876 9999999999954
Q ss_pred ccccc--cCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCC-CCceEEEeec
Q 002115 683 RYLPV--GIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKN-LSNLELHFDH 759 (965)
Q Consensus 683 ~~~p~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~L~~~~ 759 (965)
..+|. .++++++|+.|++..+...+..+ .+..+++|+.|...++... .++ ..+..+++ |+.|++++|.
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp-------~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIP-------ANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECC-------TTSEEECTTCCEEECCSSC
T ss_pred CccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-ccc-------HhhhhhcccCcEEEccCCc
Confidence 48998 89999999999998887764334 5566666665543333222 333 34666777 8888888887
Q ss_pred cCCCCcccccCCC--CC-------hhhhHHhhhcCC-------CCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEe
Q 002115 760 LRDGDEEQAGRRD--NE-------EDEDERLLEALG-------PPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLF 823 (965)
Q Consensus 760 l~~~~~~~~~~~~--~~-------~~~~~~~~~~l~-------~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~ 823 (965)
++.. +..+.... .. .......+..+. .+++|+.|++++|.+.. +|..++..+++|+.|+|+
T Consensus 389 l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 389 LKYI-PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK--FPKELFSTGSPLSSINLM 465 (636)
T ss_dssp CSSC-CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS--CCTHHHHTTCCCSEEECC
T ss_pred Cccc-chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc--CCHHHHccCCCCCEEECC
Confidence 7632 22211110 00 001111223344 56689999999998886 775666678999999999
Q ss_pred cCCCCCCCCC--CC-------CCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccccccccccccccccCccc
Q 002115 824 ECRNCEHLPP--LG-------KLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGT 894 (965)
Q Consensus 824 ~~~~~~~lp~--l~-------~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~ 894 (965)
+|.+. .+|. +. ++++|++|+|++|. ++.++..+.. ..+++|+.|+++++. +.+
T Consensus 466 ~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~----------~~l~~L~~L~Ls~N~------l~~ 527 (636)
T 4eco_A 466 GNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRA----------TTLPYLVGIDLSYNS------FSK 527 (636)
T ss_dssp SSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGST----------TTCTTCCEEECCSSC------CSS
T ss_pred CCCCC-CcCHHHhccccccccccCCccEEECcCCc-CCccChhhhh----------ccCCCcCEEECCCCC------CCC
Confidence 99877 5554 22 23389999998875 3334332220 168899999988764 333
Q ss_pred ccccccccCcccceEeec------cCccCcCCCcCCCCCCCCCeEeEcCCcc
Q 002115 895 AINGEIMIMPRLSSLSIR------RCPKLKALPDRLLQKTTLQALTIGECPI 940 (965)
Q Consensus 895 ~~~~~~~~~~~L~~L~L~------~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 940 (965)
+|..+..+++|+.|+|+ +|.....+|..+..+++|++|++++|.-
T Consensus 528 -ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp -CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred -cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 57778889999999995 4656678899999999999999999973
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=8.1e-26 Score=273.74 Aligned_cols=323 Identities=14% Similarity=0.171 Sum_probs=229.2
Q ss_pred chHHhhcCCccceEEcCcccccccccc-------------hhhHHhhhh--ccCCCcEEEeCCccCccccchhhhccCCC
Q 002115 583 LPQLFDKLTCLRALTLGVHSLRLCENC-------------IKEVRTNIE--NLLHLKYLNLAHQREIEKLPETLCELYNL 647 (965)
Q Consensus 583 l~~~~~~l~~Lr~L~L~~n~l~~~~~~-------------i~~lp~~i~--~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L 647 (965)
+|..|.++++|++|+|++|.++ +.. -..+|..++ ++++|++|+|++|.+.+.+|..+++|++|
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Ls--g~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFT--YDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCC--GGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSC
T ss_pred hhHHHhcCCCCCEEECcCCcCC--CCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCC
Confidence 6777999999999999977765 200 013888887 99999999999998788899999999999
Q ss_pred cEEeccCcc-ccc-ccCccccCCC-------CccEeecCCCcccccccc--cCCCcccccccCceEecCccCCCCCcccc
Q 002115 648 EHLDISYCR-NLR-ELPQGIGKLR-------KLMYLENDGTYSLRYLPV--GIGELIRLRIVKEFVVGGGYDRACSLGSL 716 (965)
Q Consensus 648 ~~LdL~~~~-~l~-~lP~~i~~L~-------~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~l 716 (965)
++|+|++|. ... .+|..++.++ +|++|++++|.. ..+|. .++++++|+.|++..+.... .+ .+..+
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~l~~L~~L~~L~Ls~N~l~~-lp-~~~~L 594 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL-EEFPASASLQKMVKLGLLDCVHNKVRH-LE-AFGTN 594 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC-CBCCCHHHHTTCTTCCEEECTTSCCCB-CC-CCCTT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC-CccCChhhhhcCCCCCEEECCCCCccc-ch-hhcCC
Confidence 999999997 333 5887776655 999999999854 48888 89999999999988877663 23 44444
Q ss_pred ccCCcCCcceeeccCCCCCHhHHHHhhccCCCC-CCceEEEeeccCCCCcccccCCCC--C------hhhhHHhhh----
Q 002115 717 KKLNLLRYCRIHGLGDVSDAGEARRAELEKKKN-LSNLELHFDHLRDGDEEQAGRRDN--E------EDEDERLLE---- 783 (965)
Q Consensus 717 ~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~L~~~~l~~~~~~~~~~~~~--~------~~~~~~~~~---- 783 (965)
++|+.|...++.. ..++ ..+..+++ |+.|+|++|.++.. +..+..... . .......+.
T Consensus 595 ~~L~~L~Ls~N~l-~~lp-------~~l~~l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~ 665 (876)
T 4ecn_A 595 VKLTDLKLDYNQI-EEIP-------EDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665 (876)
T ss_dssp SEESEEECCSSCC-SCCC-------TTSCEECTTCCEEECCSSCCCSC-CSCCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred CcceEEECcCCcc-ccch-------HHHhhccccCCEEECcCCCCCcC-chhhhccccCCCCEEECcCCcCCCccccchh
Confidence 4444443322222 2333 34667777 88999988877633 222111100 0 000000011
Q ss_pred cCC--CCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC--CC-------CCCCcceeeecCCCCce
Q 002115 784 ALG--PPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP--LG-------KLPSIEVLEIYGVQSVK 852 (965)
Q Consensus 784 ~l~--~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~--l~-------~L~~L~~L~L~~~~~l~ 852 (965)
.+. .+++|+.|+|++|.+.. +|..++..+++|+.|+|++|.+. .+|. +. ++++|+.|+|++|. ++
T Consensus 666 ~l~~~~~~~L~~L~Ls~N~L~~--lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~ 741 (876)
T 4ecn_A 666 SMDDYKGINASTVTLSYNEIQK--FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LT 741 (876)
T ss_dssp CTTTCCCCCEEEEECCSSCCCS--CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CC
T ss_pred hhccccCCCcCEEEccCCcCCc--cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC-Cc
Confidence 111 34589999999999887 88555668999999999999777 4554 22 34499999999875 44
Q ss_pred EeCccccCCCCCCCCccccCCcccccccccccccccccCcccccccccccCcccceEeecc------CccCcCCCcCCCC
Q 002115 853 RVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRR------CPKLKALPDRLLQ 926 (965)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~------c~~l~~lp~~l~~ 926 (965)
.++..+.. ..+++|+.|+|++|. +. + +|..+..+++|+.|+|++ |.....+|..+..
T Consensus 742 ~lp~~l~~----------~~l~~L~~L~Ls~N~-L~-----~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~ 804 (876)
T 4ecn_A 742 SLSDDFRA----------TTLPYLSNMDVSYNC-FS-----S-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT 804 (876)
T ss_dssp CCCGGGST----------TTCTTCCEEECCSSC-CS-----S-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGG
T ss_pred cchHHhhh----------ccCCCcCEEEeCCCC-CC-----c-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhc
Confidence 44433320 168999999988764 33 2 567788999999999987 5556788999999
Q ss_pred CCCCCeEeEcCCcc
Q 002115 927 KTTLQALTIGECPI 940 (965)
Q Consensus 927 l~~L~~L~l~~c~~ 940 (965)
+++|++|++++|+-
T Consensus 805 L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 805 CPSLIQLQIGSNDI 818 (876)
T ss_dssp CSSCCEEECCSSCC
T ss_pred CCCCCEEECCCCCC
Confidence 99999999999974
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=5.4e-25 Score=263.18 Aligned_cols=358 Identities=14% Similarity=0.069 Sum_probs=225.3
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhc
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIEN 619 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~ 619 (965)
..+++|.+..+.+..++...+..+++|++|.+.++. +....|..|.++++|++|+|++|.++ ...|..+++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~ 103 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ---IYWIHEDTFQSQHRLDTLVLTANPLI------FMAETALSG 103 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCS------EECTTTTSS
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCc---cceeChhhccCccccCeeeCCCCccc------ccChhhhcc
Confidence 578999999999887766667799999999999986 44556788999999999999966553 334678999
Q ss_pred cCCCcEEEeCCccCcccc-chhhhccCCCcEEeccCcccccccC-ccccCCCCccEeecCCCcccccccccCCCccccc-
Q 002115 620 LLHLKYLNLAHQREIEKL-PETLCELYNLEHLDISYCRNLRELP-QGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLR- 696 (965)
Q Consensus 620 L~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~LdL~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~- 696 (965)
+++|++|++++|. +..+ |..++++++|++|++++|. +..++ ..+..+++|++|++++|......|..++.+++|+
T Consensus 104 l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3t6q_A 104 PKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181 (606)
T ss_dssp CTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCS
T ss_pred cccccEeeccccC-cccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccce
Confidence 9999999999999 7766 5678999999999999998 65542 3445599999999999955544566788888888
Q ss_pred -ccCceEecCccCCCCCccc--c---------------ccCC-------------------------------cCCccee
Q 002115 697 -IVKEFVVGGGYDRACSLGS--L---------------KKLN-------------------------------LLRYCRI 727 (965)
Q Consensus 697 -~L~l~~~~~~~~~~~~~~~--l---------------~~L~-------------------------------~L~~l~~ 727 (965)
.|++..+......+..+.. + ..+. .|+.+.+
T Consensus 182 l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l 261 (606)
T 3t6q_A 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261 (606)
T ss_dssp EEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred eEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence 5666555444322221111 0 0000 0111111
Q ss_pred ec--cCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCC
Q 002115 728 HG--LGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNV 805 (965)
Q Consensus 728 ~~--~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 805 (965)
.. +..++ ...+..+++|+.|++++|.++. ++..+..+++|+.|++++|.+..
T Consensus 262 ~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~------------------lp~~l~~l~~L~~L~l~~n~l~~-- 315 (606)
T 3t6q_A 262 QKHYFFNIS------SNTFHCFSGLQELDLTATHLSE------------------LPSGLVGLSTLKKLVLSANKFEN-- 315 (606)
T ss_dssp TTCCCSSCC------TTTTTTCTTCSEEECTTSCCSC------------------CCSSCCSCTTCCEEECTTCCCSB--
T ss_pred ecCccCccC------HHHhccccCCCEEeccCCccCC------------------CChhhcccccCCEEECccCCcCc--
Confidence 10 01111 1235566777777777775542 23345556677777777766655
Q ss_pred CChhhHhhccCCcEEEEecCCCCCCCCC--CCCCCCcceeeecCCCCceEe--CccccCCCCC------------CCCcc
Q 002115 806 VPKIWITSLTNLRVLSLFECRNCEHLPP--LGKLPSIEVLEIYGVQSVKRV--GNEFLGVESD------------TDGSS 869 (965)
Q Consensus 806 ~p~~~~~~l~~L~~L~L~~~~~~~~lp~--l~~L~~L~~L~L~~~~~l~~~--~~~~~~~~~~------------~~~~~ 869 (965)
.++..+..+++|+.|++++|.+...+|. ++.+++|++|++++|...... +..+...... .....
T Consensus 316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 395 (606)
T 3t6q_A 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395 (606)
T ss_dssp GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT
T ss_pred CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH
Confidence 4335566667777777777665544443 666677777776665421111 1111000000 00001
Q ss_pred ccCCcccccccccccccccccCcccccc-cccccCcccceEeeccCccCcCCCcCCCCCCCCCeEeEcCCcc
Q 002115 870 VIAFPKLKQLRFDEMDVLEEWDFGTAIN-GEIMIMPRLSSLSIRRCPKLKALPDRLLQKTTLQALTIGECPI 940 (965)
Q Consensus 870 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~-~~~~~~~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 940 (965)
+..+++|+.|+++++. +....+ ..+..+++|+.|++++|......|..+..+++|++|++++|+-
T Consensus 396 ~~~l~~L~~L~l~~n~------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 396 FKECPQLELLDLAFTR------LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461 (606)
T ss_dssp TTTCTTCSEEECTTCC------EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBC
T ss_pred hcCCccCCeEECCCCc------CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCC
Confidence 1234455555544432 111112 2356788888888888876555677778888888888888863
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.1e-24 Score=250.68 Aligned_cols=364 Identities=15% Similarity=0.116 Sum_probs=247.1
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhc
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIEN 619 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~ 619 (965)
.++++|.+..+.+.......+..+++|++|.+.++... ..+.+..|.++++|++|+|++|.++ ...|..+++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~--~~i~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~ 101 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG--LVIRNNTFRGLSSLIILKLDYNQFL------QLETGAFNG 101 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT--CEECTTTTTTCTTCCEEECTTCTTC------EECTTTTTT
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCccc--ceECcccccccccCCEEeCCCCccC------ccChhhccC
Confidence 57889999988887765666668999999999887531 1334566889999999999965543 234778889
Q ss_pred cCCCcEEEeCCccCccccchh--hhccCCCcEEeccCccccccc-Ccc-ccCCCCccEeecCCCcccccccccCCCc--c
Q 002115 620 LLHLKYLNLAHQREIEKLPET--LCELYNLEHLDISYCRNLREL-PQG-IGKLRKLMYLENDGTYSLRYLPVGIGEL--I 693 (965)
Q Consensus 620 L~~Lr~L~L~~~~~i~~lp~~--i~~L~~L~~LdL~~~~~l~~l-P~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~l--~ 693 (965)
+++|++|+|++|.+....|.. +.++++|++|++++|. +..+ |.. +.++++|++|++++|......|..+..+ .
T Consensus 102 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 180 (455)
T 3v47_A 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180 (455)
T ss_dssp CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTC
T ss_pred cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhccccc
Confidence 999999999999833345554 8889999999999998 5544 655 7889999999999986666666667665 5
Q ss_pred cccccCceEecCccCCCCCcc-----ccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccc
Q 002115 694 RLRIVKEFVVGGGYDRACSLG-----SLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQA 768 (965)
Q Consensus 694 ~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~ 768 (965)
+|+.|++..+.........+. .+..++.|+.+.+............ .......++|+.|+++.|...+.....
T Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~- 258 (455)
T 3v47_A 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR-FFDAIAGTKIQSLILSNSYNMGSSFGH- 258 (455)
T ss_dssp EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH-HHHHTTTCCEEEEECTTCTTTSCCTTC-
T ss_pred cccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh-hhccccccceeeEeeccccccccccch-
Confidence 677777766655442221111 1223334444444432211111111 112233468888888877543321100
Q ss_pred cCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecC
Q 002115 769 GRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYG 847 (965)
Q Consensus 769 ~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~ 847 (965)
..... .....+..+ .+++|+.|++++|.+.. .++.++..+++|+.|+|++|.+....|. ++++++|++|+|++
T Consensus 259 ~~~~~---~~~~~~~~~-~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 332 (455)
T 3v47_A 259 TNFKD---PDNFTFKGL-EASGVKTCDLSKSKIFA--LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332 (455)
T ss_dssp CSSCC---CCTTTTGGG-TTSCCCEEECCSSCCCE--ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred hhhcc---Ccccccccc-cccCceEEEecCccccc--cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCC
Confidence 00000 000001111 24789999999999877 4447889999999999999988876664 99999999999999
Q ss_pred CCCceEeCccccCCCCCCCCccccCCcccccccccccccccccCcccccccccccCcccceEeeccCccCcCCCc-CCCC
Q 002115 848 VQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPD-RLLQ 926 (965)
Q Consensus 848 ~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~-~l~~ 926 (965)
|. +..+.... +..+++|+.|+++++. +.+..|..+..+++|+.|+|++|. ++.+|. .+..
T Consensus 333 N~-l~~~~~~~-----------~~~l~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 393 (455)
T 3v47_A 333 NF-LGSIDSRM-----------FENLDKLEVLDLSYNH------IRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDR 393 (455)
T ss_dssp SC-CCEECGGG-----------GTTCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTT
T ss_pred Cc-cCCcChhH-----------hcCcccCCEEECCCCc------ccccChhhccccccccEEECCCCc-cccCCHhHhcc
Confidence 75 33333222 2368999999988764 333445677889999999999997 556665 5688
Q ss_pred CCCCCeEeEcCCc
Q 002115 927 KTTLQALTIGECP 939 (965)
Q Consensus 927 l~~L~~L~l~~c~ 939 (965)
+++|++|++++||
T Consensus 394 l~~L~~L~l~~N~ 406 (455)
T 3v47_A 394 LTSLQKIWLHTNP 406 (455)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCcccEEEccCCC
Confidence 9999999999886
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=2e-24 Score=252.95 Aligned_cols=358 Identities=14% Similarity=0.097 Sum_probs=226.9
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhc
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIEN 619 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~ 619 (965)
..++++.+..+.+...+...+..+++|++|.+.++. +....|..|.++++|++|+|++|. +..+|.. .
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~N~-------l~~lp~~--~ 88 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNR---IQYLDISVFKFNQELEYLDLSHNK-------LVKISCH--P 88 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC---CCEEEGGGGTTCTTCCEEECCSSC-------CCEEECC--C
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCc---cCCcChHHhhcccCCCEEecCCCc-------eeecCcc--c
Confidence 588999999998887776667799999999999986 445567789999999999999554 4556665 7
Q ss_pred cCCCcEEEeCCccCccc--cchhhhccCCCcEEeccCcccccccCccccCCCCc--cEeecCCCcc--cccccccCCC--
Q 002115 620 LLHLKYLNLAHQREIEK--LPETLCELYNLEHLDISYCRNLRELPQGIGKLRKL--MYLENDGTYS--LRYLPVGIGE-- 691 (965)
Q Consensus 620 L~~Lr~L~L~~~~~i~~--lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L--~~L~l~~~~~--~~~~p~~i~~-- 691 (965)
+++|++|+|++|. +.. +|..++++++|++|++++|. +.. ..+..+++| ++|++++|.. ....|..+..
T Consensus 89 l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 89 TVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp CCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred cCCccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccccccccccccccccc
Confidence 9999999999999 554 67889999999999999988 443 356667777 8888888755 3444444443
Q ss_pred ------------------------cccccccCceEec-------------------------------------------
Q 002115 692 ------------------------LIRLRIVKEFVVG------------------------------------------- 704 (965)
Q Consensus 692 ------------------------l~~L~~L~l~~~~------------------------------------------- 704 (965)
+++|+.|++..+.
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh
Confidence 4444444444432
Q ss_pred --------------CccCCCCCccc--cccCCcCCcceeeccC-CCCCHhHHHHhhccCCCCCCceEEEeeccCCCCc-c
Q 002115 705 --------------GGYDRACSLGS--LKKLNLLRYCRIHGLG-DVSDAGEARRAELEKKKNLSNLELHFDHLRDGDE-E 766 (965)
Q Consensus 705 --------------~~~~~~~~~~~--l~~L~~L~~l~~~~~~-~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~-~ 766 (965)
..+..+..+.. ...++.|+.+.+.... .++. .... .+....+|+.|++++|.+..... .
T Consensus 245 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~--~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~ 321 (520)
T 2z7x_B 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ--SYIY-EIFSNMNIKNFTVSGTRMVHMLCPS 321 (520)
T ss_dssp HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCT--HHHH-HHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred hhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecch--hhhh-cccccCceeEEEcCCCccccccchh
Confidence 11111111100 0222222222222111 1110 0111 11011234444444443322110 0
Q ss_pred cccCCCCC----hhhhHHhhhcCCCCCCCceEEEeeecCCCC-CCChhhHhhccCCcEEEEecCCCCCCCCC--CCCCCC
Q 002115 767 QAGRRDNE----EDEDERLLEALGPPPNLKELRIYQYRGRRN-VVPKIWITSLTNLRVLSLFECRNCEHLPP--LGKLPS 839 (965)
Q Consensus 767 ~~~~~~~~----~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~-~~p~~~~~~l~~L~~L~L~~~~~~~~lp~--l~~L~~ 839 (965)
........ .......+..+..+++|+.|++++|.+... .+| .++..+++|+.|+|++|.+...+|. +..+++
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA-EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH-HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccch-HHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 00000000 000111344567778888888888887640 023 4577888888888888887765553 778888
Q ss_pred cceeeecCCCCceEeCccccCCCCCCCCccccCC-cccccccccccccccccCcccccccccccCcccceEeeccCccCc
Q 002115 840 IEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAF-PKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLK 918 (965)
Q Consensus 840 L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~ 918 (965)
|++|++++|.- .+.. ...+ ++|+.|++++|. ++ .+|..+..+++|+.|+|++|. ++
T Consensus 401 L~~L~Ls~N~l--------~~~~-------~~~l~~~L~~L~Ls~N~-l~------~ip~~~~~l~~L~~L~L~~N~-l~ 457 (520)
T 2z7x_B 401 LLSLNMSSNIL--------TDTI-------FRCLPPRIKVLDLHSNK-IK------SIPKQVVKLEALQELNVASNQ-LK 457 (520)
T ss_dssp CCEEECCSSCC--------CGGG-------GGSCCTTCCEEECCSSC-CC------CCCGGGGGCTTCCEEECCSSC-CC
T ss_pred CCEEECcCCCC--------Ccch-------hhhhcccCCEEECCCCc-cc------ccchhhhcCCCCCEEECCCCc-CC
Confidence 88888887651 1111 1133 689999988763 33 456666799999999999996 66
Q ss_pred CCCcC-CCCCCCCCeEeEcCCcc
Q 002115 919 ALPDR-LLQKTTLQALTIGECPI 940 (965)
Q Consensus 919 ~lp~~-l~~l~~L~~L~l~~c~~ 940 (965)
.+|.. +..+++|++|++++||-
T Consensus 458 ~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 458 SVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCHHHhccCCcccEEECcCCCC
Confidence 88876 88899999999999873
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=3.3e-25 Score=261.73 Aligned_cols=378 Identities=16% Similarity=0.135 Sum_probs=232.5
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhc
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIEN 619 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~ 619 (965)
..++++.+..+.+...+...+..+++|++|.+.++. +....|..|.++++|++|+|++|.++ ...|..+++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~ 96 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR---INTIEGDAFYSLGSLEHLDLSDNHLS------SLSSSWFGP 96 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTSCCC------SCCHHHHTT
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCC---cCccChhhccccccCCEEECCCCccC------ccCHHHhcc
Confidence 578999999988876665566689999999999886 44556677899999999999966553 223455899
Q ss_pred cCCCcEEEeCCccCccc--cchhhhccCCCcEEeccCcccccccC-ccccCCCCccEeecCCCcccccccccCCCccccc
Q 002115 620 LLHLKYLNLAHQREIEK--LPETLCELYNLEHLDISYCRNLRELP-QGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLR 696 (965)
Q Consensus 620 L~~Lr~L~L~~~~~i~~--lp~~i~~L~~L~~LdL~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 696 (965)
+++|++|+|++|. +.. .|..++++++|++|++++|..+..+| ..+.++++|++|++++|......|..++.+++|+
T Consensus 97 l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 97 LSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp CTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred CCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 9999999999998 663 46778999999999999988667776 4688899999999998866666777777766666
Q ss_pred ccCceEecCccCCCCCccccccC------------------------CcCCcceeeccCCCCCHhHHHHhhc--------
Q 002115 697 IVKEFVVGGGYDRACSLGSLKKL------------------------NLLRYCRIHGLGDVSDAGEARRAEL-------- 744 (965)
Q Consensus 697 ~L~l~~~~~~~~~~~~~~~l~~L------------------------~~L~~l~~~~~~~~~~~~~~~~~~l-------- 744 (965)
.|++..+.........+..+++| ..|+.+.+................+
T Consensus 176 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp EEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred eEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 66554433211000000001111 1111111100000000000000000
Q ss_pred ---------------------------------------------------cCCCCCCceEEEeeccCCCCccc---ccC
Q 002115 745 ---------------------------------------------------EKKKNLSNLELHFDHLRDGDEEQ---AGR 770 (965)
Q Consensus 745 ---------------------------------------------------~~~~~L~~L~L~~~~l~~~~~~~---~~~ 770 (965)
....+|+.|++++|.+....... ...
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~ 335 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCcc
Confidence 11123444444444433221110 000
Q ss_pred CCCC----hhhhHHh---hhcCCCCCCCceEEEeeecCCCCCCCh--hhHhhccCCcEEEEecCCCCCCCCC-CCCCCCc
Q 002115 771 RDNE----EDEDERL---LEALGPPPNLKELRIYQYRGRRNVVPK--IWITSLTNLRVLSLFECRNCEHLPP-LGKLPSI 840 (965)
Q Consensus 771 ~~~~----~~~~~~~---~~~l~~~~~L~~L~L~~~~~~~~~~p~--~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L 840 (965)
.... ....... ...+..+++|+.|++++|.+.. ++. ..+..+++|+.|+|++|.+. .+|. ++.+++|
T Consensus 336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L 412 (549)
T 2z81_A 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM 412 (549)
T ss_dssp CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC
T ss_pred ccEEEccCCccccccccchhhhhccccCcEEEccCCcccc--cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc
Confidence 0000 0011112 2346678899999999998776 442 34778999999999999776 4554 8889999
Q ss_pred ceeeecCCCCceEeCccccCC------CCCCCCccccCCcccccccccccccccccCcccccccccccCcccceEeeccC
Q 002115 841 EVLEIYGVQSVKRVGNEFLGV------ESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRC 914 (965)
Q Consensus 841 ~~L~L~~~~~l~~~~~~~~~~------~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c 914 (965)
++|++++|. ++.++..+... ..-........+++|+.|+++++. ++ .+|. ...+++|+.|+|++|
T Consensus 413 ~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~-l~------~ip~-~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 413 RFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK-LK------TLPD-ASLFPVLLVMKISRN 483 (549)
T ss_dssp CEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC-CS------SCCC-GGGCTTCCEEECCSS
T ss_pred cEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc-cC------cCCC-cccCccCCEEecCCC
Confidence 999998876 32222111000 000000011256777777777663 43 2333 346899999999999
Q ss_pred ccCcCCCcCCCCCCCCCeEeEcCCc
Q 002115 915 PKLKALPDRLLQKTTLQALTIGECP 939 (965)
Q Consensus 915 ~~l~~lp~~l~~l~~L~~L~l~~c~ 939 (965)
......|..+..+++|+.|++++||
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 484 QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred ccCCcCHHHHhcCcccCEEEecCCC
Confidence 7544445568889999999999987
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.9e-24 Score=243.07 Aligned_cols=305 Identities=15% Similarity=0.115 Sum_probs=221.4
Q ss_pred hcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHH-hhhhccCCCcEEEeCCccCccccc-h
Q 002115 562 HVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVR-TNIENLLHLKYLNLAHQREIEKLP-E 639 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp-~~i~~L~~Lr~L~L~~~~~i~~lp-~ 639 (965)
.+++++.|.+.++. +..+.+..|..+++|++|+|++|.+ ..++ ..++.+++|++|+|++|. +..+| .
T Consensus 43 ~l~~l~~l~l~~~~---l~~l~~~~~~~l~~L~~L~L~~n~i-------~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLNDLQI-------EEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH 111 (390)
T ss_dssp GGCCCSEEEEESCE---ESEECTHHHHHCCCCSEEECTTSCC-------CEECTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred ccCCceEEEecCCc---hhhCChhHhcccccCcEEECCCCcc-------cccChhhccCCCCcCEEECCCCC-CCcCCHH
Confidence 56788888887765 4444455578888888888885443 3443 467888888888888888 55554 5
Q ss_pred hhhccCCCcEEeccCcccccccCcc-ccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCcccccc
Q 002115 640 TLCELYNLEHLDISYCRNLRELPQG-IGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKK 718 (965)
Q Consensus 640 ~i~~L~~L~~LdL~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 718 (965)
.++++++|++|++++|. +..+|.. +.++++|++|++++|......|..++.+++|+.|++..+..... . +..
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~---~~~ 184 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---D---LSL 184 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---C---GGG
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---c---ccc
Confidence 67888888888888887 7777776 47888888888888855444455688888888888877766541 2 333
Q ss_pred CCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEee
Q 002115 719 LNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQ 798 (965)
Q Consensus 719 L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 798 (965)
++.|+.+.+.... + ..+....+|+.|++++|.+.... ...+++|+.|++++
T Consensus 185 l~~L~~L~l~~n~-l--------~~~~~~~~L~~L~l~~n~l~~~~--------------------~~~~~~L~~L~l~~ 235 (390)
T 3o6n_A 185 IPSLFHANVSYNL-L--------STLAIPIAVEELDASHNSINVVR--------------------GPVNVELTILKLQH 235 (390)
T ss_dssp CTTCSEEECCSSC-C--------SEEECCSSCSEEECCSSCCCEEE--------------------CCCCSSCCEEECCS
T ss_pred ccccceeeccccc-c--------cccCCCCcceEEECCCCeeeecc--------------------ccccccccEEECCC
Confidence 3444433333211 1 12344568999999988653311 12357899999999
Q ss_pred ecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccc
Q 002115 799 YRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLK 877 (965)
Q Consensus 799 ~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~ 877 (965)
|.+.. . .++..+++|+.|+|++|.+....|. ++.+++|++|+|++|. ++.++..+ ..+|+|+
T Consensus 236 n~l~~--~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~------------~~l~~L~ 298 (390)
T 3o6n_A 236 NNLTD--T--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------------QPIPTLK 298 (390)
T ss_dssp SCCCC--C--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSS------------SCCTTCC
T ss_pred CCCcc--c--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCccc------------CCCCCCC
Confidence 99876 4 4788999999999999988776555 8999999999999875 43332211 2689999
Q ss_pred cccccccccccccCcccccccccccCcccceEeeccCccCcCCCcCCCCCCCCCeEeEcCCcc
Q 002115 878 QLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPDRLLQKTTLQALTIGECPI 940 (965)
Q Consensus 878 ~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 940 (965)
.|+++++. +. .+|..+..+++|+.|+|++|+ +..+| +..+++|++|++++||-
T Consensus 299 ~L~L~~n~-l~------~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 299 VLDLSHNH-LL------HVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp EEECCSSC-CC------CCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred EEECCCCc-ce------ecCccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCc
Confidence 99998874 43 234556689999999999997 56665 67789999999999984
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=3.3e-25 Score=265.02 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=112.2
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhH-Hhhhh
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEV-RTNIE 618 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~l-p~~i~ 618 (965)
..++++.+..+.+..++...+.++++|++|.+.++. +....|..|.++++|++|+|++|.+ ..+ |..++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~i~~~~~~~l~~L~~L~Ls~n~l-------~~~~p~~~~ 101 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE---IETIEDKAWHGLHHLSNLILTGNPI-------QSFSPGSFS 101 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCC-------CCCCTTSST
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc---ccccCHHHhhchhhcCEeECCCCcc-------cccChhhcC
Confidence 678999999998887777667799999999999876 4455677789999999999995554 444 77889
Q ss_pred ccCCCcEEEeCCccCccccc-hhhhccCCCcEEeccCccccc-ccCccccCCCCccEeecCCCcccccccccCCCcc
Q 002115 619 NLLHLKYLNLAHQREIEKLP-ETLCELYNLEHLDISYCRNLR-ELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELI 693 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~LdL~~~~~l~-~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~ 693 (965)
++++|++|+|++|. +..+| ..++++++|++|++++|.... .+|..++++++|++|++++|......|..++.++
T Consensus 102 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 102 GLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp TCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred CcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence 99999999999998 66666 678999999999999988333 5788899999999999988854433344344333
No 17
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=4.3e-24 Score=236.20 Aligned_cols=303 Identities=15% Similarity=0.202 Sum_probs=201.8
Q ss_pred hcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhh
Q 002115 562 HVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETL 641 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i 641 (965)
.+++|+.|.+.++... . ++. +..+++|++|++++|. +..+|. +..+++|++|++++|. +..+|. +
T Consensus 42 ~l~~L~~L~l~~~~i~---~-~~~-~~~~~~L~~L~l~~n~-------i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~-~ 106 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA---S-IQG-IEYLTNLEYLNLNGNQ-------ITDISP-LSNLVKLTNLYIGTNK-ITDISA-L 106 (347)
T ss_dssp HHTTCSEEECCSSCCC---C-CTT-GGGCTTCCEEECCSSC-------CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-G
T ss_pred hcccccEEEEeCCccc---c-chh-hhhcCCccEEEccCCc-------cccchh-hhcCCcCCEEEccCCc-ccCchH-H
Confidence 5566677776665432 2 232 6667777777777433 333443 6667777777777776 666653 6
Q ss_pred hccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCc
Q 002115 642 CELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNL 721 (965)
Q Consensus 642 ~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 721 (965)
.++++|++|++++|. +..+|. +..+++|++|++++|.....++ .+..+++|+.|++..+.... +..+..+++
T Consensus 107 ~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-----~~~~~~l~~ 178 (347)
T 4fmz_A 107 QNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-----VTPIANLTD 178 (347)
T ss_dssp TTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-----CGGGGGCTT
T ss_pred cCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-----chhhccCCC
Confidence 677777777777766 555554 6667777777777664444333 36667777777666555443 111334444
Q ss_pred CCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecC
Q 002115 722 LRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRG 801 (965)
Q Consensus 722 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 801 (965)
|+.+.+........ ..+..+++|+.|++++|.+.+.. .+..+++|+.|++++|.+
T Consensus 179 L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~~-------------------~~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 179 LYSLSLNYNQIEDI------SPLASLTSLHYFTAYVNQITDIT-------------------PVANMTRLNSLKIGNNKI 233 (347)
T ss_dssp CSEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCCG-------------------GGGGCTTCCEEECCSSCC
T ss_pred CCEEEccCCccccc------ccccCCCccceeecccCCCCCCc-------------------hhhcCCcCCEEEccCCcc
Confidence 44444433211111 12567788999999988654321 155678999999999998
Q ss_pred CCCCCChhhHhhccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccccccc
Q 002115 802 RRNVVPKIWITSLTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRF 881 (965)
Q Consensus 802 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l 881 (965)
.. .+ . +..+++|+.|+|++|.+.. ++.+..+++|++|++++|. ++.++ ....+++|+.|++
T Consensus 234 ~~--~~-~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~-------------~~~~l~~L~~L~L 294 (347)
T 4fmz_A 234 TD--LS-P-LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQ-ISDIS-------------VLNNLSQLNSLFL 294 (347)
T ss_dssp CC--CG-G-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCG-------------GGGGCTTCSEEEC
T ss_pred CC--Cc-c-hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCc-cCCCh-------------hhcCCCCCCEEEC
Confidence 87 66 3 7889999999999997654 5678999999999999875 32221 1347899999998
Q ss_pred cccccccccCcccccccccccCcccceEeeccCccCcCCCcCCCCCCCCCeEeEcCCc
Q 002115 882 DEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPDRLLQKTTLQALTIGECP 939 (965)
Q Consensus 882 ~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 939 (965)
++|. +.+..+..+..+++|+.|+|++|+ +..++. +..+++|++|++++|+
T Consensus 295 ~~n~------l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 295 NNNQ------LGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CSSC------CCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred cCCc------CCCcChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 8875 333344566789999999999998 455554 7789999999999997
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=9.1e-25 Score=259.36 Aligned_cols=366 Identities=14% Similarity=0.087 Sum_probs=212.6
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhH-Hhhhh
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEV-RTNIE 618 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~l-p~~i~ 618 (965)
..+++|.+..+.+..++...+..+++|++|.+.++. +..+.+..|.++++|++|+|++|.+ ..+ |..++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---i~~i~~~~~~~l~~L~~L~L~~n~l-------~~~~~~~~~ 97 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNPI-------QSLALGAFS 97 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCC-------CEECTTTTT
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCc---CCccCcccccCchhCCEEeCcCCcC-------CccCHhhhc
Confidence 578889998888876666666688999999998876 4444566788899999999985544 333 35678
Q ss_pred ccCCCcEEEeCCccCccccch-hhhccCCCcEEeccCccccc--ccCccccCCCCccEeecCCCcccccccccCCCcccc
Q 002115 619 NLLHLKYLNLAHQREIEKLPE-TLCELYNLEHLDISYCRNLR--ELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRL 695 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~LdL~~~~~l~--~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 695 (965)
++.+|++|++++|. +..+|. .++++++|++|++++|. +. .+|..+.++++|++|++++|......|..++.+++|
T Consensus 98 ~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 98 GLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred Cccccccccccccc-cccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 88888888888887 777765 57888888888888887 44 367788888888888888774433333444444444
Q ss_pred ----cccCceEecCccC---------------------------------------------------------------
Q 002115 696 ----RIVKEFVVGGGYD--------------------------------------------------------------- 708 (965)
Q Consensus 696 ----~~L~l~~~~~~~~--------------------------------------------------------------- 708 (965)
..|++..+.....
T Consensus 176 ~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~ 255 (570)
T 2z63_A 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255 (570)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGG
T ss_pred chhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccc
Confidence 2222221111100
Q ss_pred ------------------CCCCccccccCCcCCcceeecc--CCCCCHh-------------------HHH---------
Q 002115 709 ------------------RACSLGSLKKLNLLRYCRIHGL--GDVSDAG-------------------EAR--------- 740 (965)
Q Consensus 709 ------------------~~~~~~~l~~L~~L~~l~~~~~--~~~~~~~-------------------~~~--------- 740 (965)
.+..+.. +++|+.+.+... ..++... ...
T Consensus 256 ~l~l~~l~l~~~~~~~~~~~~~~~~---l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l 332 (570)
T 2z63_A 256 NLTIEEFRLAYLDYYLDDIIDLFNC---LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332 (570)
T ss_dssp GSEEEEEEEEETTEEESCSTTTTGG---GTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEE
T ss_pred ccchhhhhhhcchhhhhhchhhhcC---cCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeC
Confidence 0011111 122222211110 0000000 000
Q ss_pred -------HhhccCCCCCCceEEEeeccCCCC--cccccCCCCC------hhhhHHhhhcCCCCCCCceEEEeeecCCCCC
Q 002115 741 -------RAELEKKKNLSNLELHFDHLRDGD--EEQAGRRDNE------EDEDERLLEALGPPPNLKELRIYQYRGRRNV 805 (965)
Q Consensus 741 -------~~~l~~~~~L~~L~L~~~~l~~~~--~~~~~~~~~~------~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 805 (965)
......+++|+.|+++.|.+.... +..+...... .......+..+..+++|+.|++++|......
T Consensus 333 ~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~ 412 (570)
T 2z63_A 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 412 (570)
T ss_dssp ESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCT
T ss_pred cCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccccc
Confidence 000145677888888877654321 0000000000 0000111122445566666666666554411
Q ss_pred CChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCCCCc-eEeCccccCCCCCCCCccccCCcccccccccc
Q 002115 806 VPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGVQSV-KRVGNEFLGVESDTDGSSVIAFPKLKQLRFDE 883 (965)
Q Consensus 806 ~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~~~l-~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~ 883 (965)
.+ ..+..+++|+.|+|++|.+....|. ++++++|++|+|++|... ..++. .+..+++|+.|++++
T Consensus 413 ~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~------------~~~~l~~L~~L~l~~ 479 (570)
T 2z63_A 413 EF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD------------IFTELRNLTFLDLSQ 479 (570)
T ss_dssp TS-CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS------------CCTTCTTCCEEECTT
T ss_pred ch-hhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh------------hhhcccCCCEEECCC
Confidence 11 3455666677777776665554444 666677777777665421 01211 123577888887776
Q ss_pred cccccccCcccccccccccCcccceEeeccCccCcCCCcCCCCCCCCCeEeEcCCc
Q 002115 884 MDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPDRLLQKTTLQALTIGECP 939 (965)
Q Consensus 884 ~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 939 (965)
|. +.+..|..+..+++|+.|+|++|......|..+..+++|++|++++||
T Consensus 480 n~------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 480 CQ------LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp SC------CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred Cc------cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 63 333345667788999999999997444444567889999999999876
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.7e-24 Score=255.30 Aligned_cols=305 Identities=15% Similarity=0.119 Sum_probs=225.4
Q ss_pred hcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhH-HhhhhccCCCcEEEeCCccCccccch-
Q 002115 562 HVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEV-RTNIENLLHLKYLNLAHQREIEKLPE- 639 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~l-p~~i~~L~~Lr~L~L~~~~~i~~lp~- 639 (965)
.+.+++.|.+.++. +..+.+..|.++++|++|+|++|.+ ..+ |..++.+++|++|+|++|. +..+|.
T Consensus 49 ~l~~l~~l~l~~~~---l~~lp~~~~~~l~~L~~L~L~~n~l-------~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLNDLQI-------EEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH 117 (597)
T ss_dssp GGCCCSEEEESSCE---ESEECTHHHHHCCCCSEEECTTSCC-------CEECTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred cCCCceEEEeeCCC---CCCcCHHHHccCCCCcEEECCCCCC-------CCCChHHhcCCCCCCEEECCCCc-CCCCCHH
Confidence 56788888888765 4444566678889999999985554 334 3478888999999999988 655554
Q ss_pred hhhccCCCcEEeccCcccccccCcc-ccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCcccccc
Q 002115 640 TLCELYNLEHLDISYCRNLRELPQG-IGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKK 718 (965)
Q Consensus 640 ~i~~L~~L~~LdL~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 718 (965)
.|+++++|++|+|++|. +..+|.. +.++++|++|++++|......|..++++++|+.|++..+..... .+..
T Consensus 118 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~--- 190 (597)
T 3oja_B 118 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSL--- 190 (597)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGG---
T ss_pred HHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhh---
Confidence 57889999999999887 7777776 47889999999988865555556788889999988877766541 2333
Q ss_pred CCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEee
Q 002115 719 LNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQ 798 (965)
Q Consensus 719 L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 798 (965)
++.|+.+.+.... + ..+....+|+.|++++|.+.... . ..+++|+.|+|++
T Consensus 191 l~~L~~L~l~~n~-l--------~~l~~~~~L~~L~ls~n~l~~~~------------------~--~~~~~L~~L~L~~ 241 (597)
T 3oja_B 191 IPSLFHANVSYNL-L--------STLAIPIAVEELDASHNSINVVR------------------G--PVNVELTILKLQH 241 (597)
T ss_dssp CTTCSEEECCSSC-C--------SEEECCTTCSEEECCSSCCCEEE------------------C--SCCSCCCEEECCS
T ss_pred hhhhhhhhcccCc-c--------ccccCCchhheeeccCCcccccc------------------c--ccCCCCCEEECCC
Confidence 3444433333211 1 12345568999999998654321 1 1236899999999
Q ss_pred ecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccc
Q 002115 799 YRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLK 877 (965)
Q Consensus 799 ~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~ 877 (965)
|.+.. + .++..+++|+.|+|++|.+....|. ++.+++|+.|+|++|. +..++..+ ..+|+|+
T Consensus 242 n~l~~--~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~------------~~l~~L~ 304 (597)
T 3oja_B 242 NNLTD--T--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------------QPIPTLK 304 (597)
T ss_dssp SCCCC--C--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSS------------SCCTTCC
T ss_pred CCCCC--C--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCccc------------ccCCCCc
Confidence 99876 3 4788999999999999988877665 9999999999999875 43332211 2689999
Q ss_pred cccccccccccccCcccccccccccCcccceEeeccCccCcCCCcCCCCCCCCCeEeEcCCcc
Q 002115 878 QLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPDRLLQKTTLQALTIGECPI 940 (965)
Q Consensus 878 ~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 940 (965)
.|+|++|. +. .+|..+..+++|+.|+|++|+ +..+| +..+++|+.|++++||-
T Consensus 305 ~L~Ls~N~-l~------~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 305 VLDLSHNH-LL------HVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp EEECCSSC-CC------CCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred EEECCCCC-CC------ccCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCC
Confidence 99998875 33 345566789999999999997 55565 66789999999999984
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=6.8e-24 Score=262.22 Aligned_cols=282 Identities=18% Similarity=0.142 Sum_probs=179.6
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhc
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIEN 619 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~ 619 (965)
..+++|.+..+.+..+....+..+++|++|.+.++.. ...+.|..|.++++|++|+|++|.++ ...|..+++
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls~N~l~------~~~p~~~~~ 95 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLGSSKIY------FLHPDAFQG 95 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECTTCCCC------EECTTSSCS
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECCCCcCc------ccCHhHccC
Confidence 6899999999988876666667999999999998742 33434777999999999999966553 234788999
Q ss_pred cCCCcEEEeCCccCccccchh--hhccCCCcEEeccCccccccc--CccccCCCCccEeecCCCcccccccccCCCc--c
Q 002115 620 LLHLKYLNLAHQREIEKLPET--LCELYNLEHLDISYCRNLREL--PQGIGKLRKLMYLENDGTYSLRYLPVGIGEL--I 693 (965)
Q Consensus 620 L~~Lr~L~L~~~~~i~~lp~~--i~~L~~L~~LdL~~~~~l~~l--P~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l--~ 693 (965)
+++|++|+|++|.+...+|.. ++++++|++|++++|. +..+ |..++++++|++|++++|......|..++.+ +
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 999999999999844446665 8899999999999998 5444 3468999999999999886655556666655 6
Q ss_pred cccccCceEecCccCCCCCcccccc------CCcCCcceeeccCCCCC--------------------------------
Q 002115 694 RLRIVKEFVVGGGYDRACSLGSLKK------LNLLRYCRIHGLGDVSD-------------------------------- 735 (965)
Q Consensus 694 ~L~~L~l~~~~~~~~~~~~~~~l~~------L~~L~~l~~~~~~~~~~-------------------------------- 735 (965)
+|+.|++..+......+..+..+.+ |+.|...++......+.
T Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 6776666655544322222222111 22111111100000000
Q ss_pred Hh-----------------------HHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCc
Q 002115 736 AG-----------------------EARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLK 792 (965)
Q Consensus 736 ~~-----------------------~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 792 (965)
.. ......+..+++|+.|+|+.|.+.+.. ...+..+++|+
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-----------------~~~~~~l~~L~ 317 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-----------------DEAFYGLDNLQ 317 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC-----------------TTTTTTCSSCC
T ss_pred CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC-----------------hHHhcCCCCCC
Confidence 00 000112344455555555555433221 23455667777
Q ss_pred eEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCCC
Q 002115 793 ELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGVQ 849 (965)
Q Consensus 793 ~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~~ 849 (965)
.|+|++|.+.. .++.++..+++|+.|+|++|.+....+. ++++++|++|+|++|.
T Consensus 318 ~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 318 VLNLSYNLLGE--LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp EEEEESCCCSC--CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred EEECCCCCCCc--cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 77777777655 3325666777777777777765443333 6677777777776654
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.5e-24 Score=259.29 Aligned_cols=106 Identities=29% Similarity=0.389 Sum_probs=74.6
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHH-hhhh
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVR-TNIE 618 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp-~~i~ 618 (965)
..+++|.+..+.+..+++..+.++++|++|.+.++. +....|..|.++++|++|+|++|.+ ..+| ..++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~L~~n~l-------~~~~~~~~~ 125 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP---IQSFSPGSFSGLTSLENLVAVETKL-------ASLESFPIG 125 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC---CCCCCTTSSTTCTTCCEEECTTSCC-------CCSSSSCCT
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc---ccccChhhcCCcccCCEEEccCCcc-------ccccccccC
Confidence 577888888877776666666688888888888775 4444566788888888888885544 3333 4567
Q ss_pred ccCCCcEEEeCCccCcc--ccchhhhccCCCcEEeccCcc
Q 002115 619 NLLHLKYLNLAHQREIE--KLPETLCELYNLEHLDISYCR 656 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~--~lp~~i~~L~~L~~LdL~~~~ 656 (965)
++.+|++|++++|. +. .+|..++++++|++|++++|.
T Consensus 126 ~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 126 QLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp TCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred CCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCc
Confidence 77777777777777 44 467777777777777777765
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=1.4e-23 Score=247.94 Aligned_cols=341 Identities=16% Similarity=0.131 Sum_probs=205.3
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhc
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIEN 619 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~ 619 (965)
..+++|.+..+.+..++...+..+++|++|.+.++. +....|..|.++++|++|+|++|. +..+|.. .
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~-------l~~lp~~--~ 119 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR---IRSLDFHVFLFNQDLEYLDVSHNR-------LQNISCC--P 119 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC---CCEECTTTTTTCTTCCEEECTTSC-------CCEECSC--C
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCC---CCcCCHHHhCCCCCCCEEECCCCc-------CCccCcc--c
Confidence 567788888777776666566678888888887775 444456667788888888888444 3455655 6
Q ss_pred cCCCcEEEeCCccCcccc--chhhhccCCCcEEeccCcccccccCccccCCCCc--cEeecCCCcc--cccccccCCC--
Q 002115 620 LLHLKYLNLAHQREIEKL--PETLCELYNLEHLDISYCRNLRELPQGIGKLRKL--MYLENDGTYS--LRYLPVGIGE-- 691 (965)
Q Consensus 620 L~~Lr~L~L~~~~~i~~l--p~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L--~~L~l~~~~~--~~~~p~~i~~-- 691 (965)
+++|++|+|++|. +..+ |..++++++|++|++++|. +.. ..+..+++| ++|++++|.. ....|..+..
T Consensus 120 l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~ 195 (562)
T 3a79_B 120 MASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195 (562)
T ss_dssp CTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECC
T ss_pred cccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCcccccccC
Confidence 7788888888887 6554 3678888888888888876 433 234444444 7777777644 2333333332
Q ss_pred ------------------------ccc-----------------------------------------------------
Q 002115 692 ------------------------LIR----------------------------------------------------- 694 (965)
Q Consensus 692 ------------------------l~~----------------------------------------------------- 694 (965)
+++
T Consensus 196 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~ 275 (562)
T 3a79_B 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275 (562)
T ss_dssp EEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTT
T ss_pred cceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhc
Confidence 222
Q ss_pred --ccccCceEecCccCCCCCcc--ccccCCcCCcceeeccC-CCCCHhHHHHhhc---------------------cCCC
Q 002115 695 --LRIVKEFVVGGGYDRACSLG--SLKKLNLLRYCRIHGLG-DVSDAGEARRAEL---------------------EKKK 748 (965)
Q Consensus 695 --L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~~l~~~~~~-~~~~~~~~~~~~l---------------------~~~~ 748 (965)
|+.|++..+...+..+..+. ...+|+.|..+.+.... .++. +.....+ ..++
T Consensus 276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 353 (562)
T 3a79_B 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK--EALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353 (562)
T ss_dssp SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCH--HHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred ccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecCh--hhhhhhhccCcceEEEccCCCcccccCccCCC
Confidence 22333333222211111110 00222222222222111 0110 1111110 2334
Q ss_pred CCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCCh--hhHhhccCCcEEEEecCC
Q 002115 749 NLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPK--IWITSLTNLRVLSLFECR 826 (965)
Q Consensus 749 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~--~~~~~l~~L~~L~L~~~~ 826 (965)
+|+.|++++|.+++ ..+..+..+++|+.|++++|.+.. ++. ..+..+++|+.|+|++|.
T Consensus 354 ~L~~L~l~~n~l~~-----------------~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 354 SFTFLNFTQNVFTD-----------------SVFQGCSTLKRLQTLILQRNGLKN--FFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp CCCEEECCSSCCCT-----------------TTTTTCCSCSSCCEEECCSSCCCB--TTHHHHTTTTCTTCCEEECTTSC
T ss_pred CceEEECCCCcccc-----------------chhhhhcccCCCCEEECCCCCcCC--cccchhhhcCCCCCCEEECCCCc
Confidence 44444444443322 123456677788888888887765 431 345677888888888887
Q ss_pred CCCCCCC--CCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCC-cccccccccccccccccCcccccccccccC
Q 002115 827 NCEHLPP--LGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAF-PKLKQLRFDEMDVLEEWDFGTAINGEIMIM 903 (965)
Q Consensus 827 ~~~~lp~--l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~ 903 (965)
+...+|. +..+++|++|++++|.- .+.. ...+ ++|+.|+++++. ++ .+|..+..+
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l--------~~~~-------~~~l~~~L~~L~L~~N~-l~------~ip~~~~~l 472 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNML--------TGSV-------FRCLPPKVKVLDLHNNR-IM------SIPKDVTHL 472 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCC--------CGGG-------GSSCCTTCSEEECCSSC-CC------CCCTTTTSS
T ss_pred CCCccChhhhcCcccCCEEECCCCCC--------Ccch-------hhhhcCcCCEEECCCCc-Cc------ccChhhcCC
Confidence 7664554 77788888888877541 1111 1234 589999887763 43 345666689
Q ss_pred cccceEeeccCccCcCCCcC-CCCCCCCCeEeEcCCcc
Q 002115 904 PRLSSLSIRRCPKLKALPDR-LLQKTTLQALTIGECPI 940 (965)
Q Consensus 904 ~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~ 940 (965)
++|+.|+|++|. ++.+|.. +..+++|+.|++++||-
T Consensus 473 ~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 473 QALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred CCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCCc
Confidence 999999999997 6688887 88999999999999873
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=4.1e-24 Score=255.52 Aligned_cols=160 Identities=19% Similarity=0.100 Sum_probs=75.7
Q ss_pred ccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhc
Q 002115 665 IGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAEL 744 (965)
Q Consensus 665 i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l 744 (965)
+..+++|++|++++| .+..+|.+++++++|+.|++..+......+..+..+++|+.|...++.....++. ..+
T Consensus 274 ~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~------~~~ 346 (606)
T 3t6q_A 274 FHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT------GCL 346 (606)
T ss_dssp TTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS------STT
T ss_pred hccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch------hhh
Confidence 455566666666666 3445666666666666666665554432223333333333332222211111111 234
Q ss_pred cCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEec
Q 002115 745 EKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFE 824 (965)
Q Consensus 745 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~ 824 (965)
..+++|+.|++++|.+.+... ....+..+++|+.|++++|.... .++..+..+++|+.|+|++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~---------------~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDC---------------CNLQLRNLSHLQSLNLSYNEPLS--LKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEE---------------STTTTTTCTTCCEEECCSCSCEE--ECTTTTTTCTTCSEEECTT
T ss_pred hccCcCCEEECCCCccccccC---------------cchhcccCCCCCEEECCCCcCCc--CCHHHhcCCccCCeEECCC
Confidence 555666666666664432110 01234445555555555555443 2224444555555555555
Q ss_pred CCCCCCCCC--CCCCCCcceeeecCC
Q 002115 825 CRNCEHLPP--LGKLPSIEVLEIYGV 848 (965)
Q Consensus 825 ~~~~~~lp~--l~~L~~L~~L~L~~~ 848 (965)
|.+....|. ++.+++|++|++++|
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred CcCCCcccchhhhCcccCCEEECCCC
Confidence 544433322 455555555555554
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=6.2e-24 Score=248.83 Aligned_cols=356 Identities=16% Similarity=0.098 Sum_probs=217.3
Q ss_pred EEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCC
Q 002115 543 LHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLH 622 (965)
Q Consensus 543 r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~ 622 (965)
+++.+..+++..+|..++ ++|+.|.+.++. +....|..|.++++|++|+|++|.++ ...|..++++++
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~ 70 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNY---ISELWTSDILSLSKLRILIISHNRIQ------YLDISVFKFNQE 70 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSSC---CCCCCHHHHTTCTTCCEEECCSSCCC------EEEGGGGTTCTT
T ss_pred ceEecCCCCccccccccc---ccccEEECCCCc---ccccChhhccccccccEEecCCCccC------CcChHHhhcccC
Confidence 356666777766665544 899999999987 44556778999999999999966553 234778999999
Q ss_pred CcEEEeCCccCccccchhhhccCCCcEEeccCccccc-ccCccccCCCCccEeecCCCcccccccccCCCcccc--cccC
Q 002115 623 LKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLR-ELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRL--RIVK 699 (965)
Q Consensus 623 Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~-~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L--~~L~ 699 (965)
|++|+|++|. ++.+|.. .+++|++|++++|.... .+|..++++++|++|++++|.... ..++.+++| +.|+
T Consensus 71 L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~ 144 (520)
T 2z7x_B 71 LEYLDLSHNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVL 144 (520)
T ss_dssp CCEEECCSSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEE
T ss_pred CCEEecCCCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEE
Confidence 9999999999 8899986 89999999999999333 367899999999999999985433 456777888 9999
Q ss_pred ceEecC--ccCCCCCccccc-----------------------cCCcCCcceeeccCC---CCCHh--------------
Q 002115 700 EFVVGG--GYDRACSLGSLK-----------------------KLNLLRYCRIHGLGD---VSDAG-------------- 737 (965)
Q Consensus 700 l~~~~~--~~~~~~~~~~l~-----------------------~L~~L~~l~~~~~~~---~~~~~-------------- 737 (965)
+..+.. ....+..+..+. .++.|+.+.+..... .....
T Consensus 145 l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~ 224 (520)
T 2z7x_B 145 LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN 224 (520)
T ss_dssp EEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCE
T ss_pred eecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhh
Confidence 988776 332222333221 223333222222100 00000
Q ss_pred -------------HHHHhhccCCCCCCceEEEeeccCCCCcccc-----cCCCCChhh---------h-HHhhhc-----
Q 002115 738 -------------EARRAELEKKKNLSNLELHFDHLRDGDEEQA-----GRRDNEEDE---------D-ERLLEA----- 784 (965)
Q Consensus 738 -------------~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~-----~~~~~~~~~---------~-~~~~~~----- 784 (965)
...... ...++|+.|++++|.+.+..+..+ ......... . ..+...
T Consensus 225 L~l~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~ 303 (520)
T 2z7x_B 225 LTLNNIETTWNSFIRILQL-VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303 (520)
T ss_dssp EEEEEEEEEHHHHHHHHHH-HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCC
T ss_pred ccccccccCHHHHHHHHHH-hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCc
Confidence 000000 113478888888887764333322 111100000 0 000000
Q ss_pred ----------------CCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCC--CCCC-CCCCCCcceeee
Q 002115 785 ----------------LGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCE--HLPP-LGKLPSIEVLEI 845 (965)
Q Consensus 785 ----------------l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~--~lp~-l~~L~~L~~L~L 845 (965)
...+++|+.|++++|.+... .| .++..+++|+.|+|++|.+.. .+|. ++.+++|++|++
T Consensus 304 L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~-~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT-VF-ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT-TT-TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred eeEEEcCCCccccccchhhCCcccEEEeECCccChh-hh-hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 13445566666665555441 22 445556666666666665443 2222 555666666666
Q ss_pred cCCCCceEeCccccCCCCCCCCccccCCcccccccccccccccccCcccccccccccCcccceEeeccCccCcCCCcCCC
Q 002115 846 YGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPDRLL 925 (965)
Q Consensus 846 ~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~l~ 925 (965)
++|.-...++... ...+++|+.|++++|. + .+..|..+ .++|+.|+|++|. +..+|..+.
T Consensus 382 s~N~l~~~l~~~~-----------~~~l~~L~~L~Ls~N~-l-----~~~~~~~l--~~~L~~L~Ls~N~-l~~ip~~~~ 441 (520)
T 2z7x_B 382 SQNSVSYDEKKGD-----------CSWTKSLLSLNMSSNI-L-----TDTIFRCL--PPRIKVLDLHSNK-IKSIPKQVV 441 (520)
T ss_dssp CSSCCBCCGGGCS-----------CCCCTTCCEEECCSSC-C-----CGGGGGSC--CTTCCEEECCSSC-CCCCCGGGG
T ss_pred CCCcCCcccccch-----------hccCccCCEEECcCCC-C-----Ccchhhhh--cccCCEEECCCCc-ccccchhhh
Confidence 5543111011110 1245677777766653 2 22222222 1799999999996 668998888
Q ss_pred CCCCCCeEeEcCCc
Q 002115 926 QKTTLQALTIGECP 939 (965)
Q Consensus 926 ~l~~L~~L~l~~c~ 939 (965)
.+++|++|++++|+
T Consensus 442 ~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 442 KLEALQELNVASNQ 455 (520)
T ss_dssp GCTTCCEEECCSSC
T ss_pred cCCCCCEEECCCCc
Confidence 89999999999996
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=6.1e-24 Score=245.92 Aligned_cols=259 Identities=20% Similarity=0.126 Sum_probs=148.3
Q ss_pred eCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEe
Q 002115 549 LDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNL 628 (965)
Q Consensus 549 ~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L 628 (965)
..+...+|..+. ++++.|.+.++. +....+..|.++++|++|+|++|.++ ...|..++++++|++|+|
T Consensus 20 ~~~l~~ip~~~~---~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 20 RKRFVAVPEGIP---TETRLLDLGKNR---IKTLNQDEFASFPHLEELELNENIVS------AVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp SCCCSSCCSCCC---TTCSEEECCSSC---CCEECTTTTTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEEC
T ss_pred CCCcCcCCCCCC---CCCcEEECCCCc---cceECHhHccCCCCCCEEECCCCccC------EeChhhhhCCccCCEEEC
Confidence 334444444332 577888888776 44445666888888888888855443 223667888888888888
Q ss_pred CCccCccccch-hhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccCceEecCcc
Q 002115 629 AHQREIEKLPE-TLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGY 707 (965)
Q Consensus 629 ~~~~~i~~lp~-~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~ 707 (965)
++|. +..+|. .+.++++|++|+|++|......|..+..+++|++|++++|......|..++++++|+.|++..+....
T Consensus 88 ~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 88 RSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp CSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred CCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc
Confidence 8888 777775 46788888888888888444456667888888888888885555556677888888888777665443
Q ss_pred CCCCCccccccCCcCCcceeeccC--CCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcC
Q 002115 708 DRACSLGSLKKLNLLRYCRIHGLG--DVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEAL 785 (965)
Q Consensus 708 ~~~~~~~~l~~L~~L~~l~~~~~~--~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 785 (965)
..... +..++.|+.+.+.... .++ ...+..+++|+.|++++|...+. ++...
T Consensus 167 ~~~~~---l~~l~~L~~L~l~~n~i~~~~------~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~ 220 (477)
T 2id5_A 167 IPTEA---LSHLHGLIVLRLRHLNINAIR------DYSFKRLYRLKVLEISHWPYLDT-----------------MTPNC 220 (477)
T ss_dssp CCHHH---HTTCTTCCEEEEESCCCCEEC------TTCSCSCTTCCEEEEECCTTCCE-----------------ECTTT
T ss_pred cChhH---hcccCCCcEEeCCCCcCcEeC------hhhcccCcccceeeCCCCccccc-----------------cCccc
Confidence 11111 2222223222222211 011 02344455555555555432111 11111
Q ss_pred CCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCC
Q 002115 786 GPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGV 848 (965)
Q Consensus 786 ~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~ 848 (965)
....+|+.|+|++|.+.. +|...+..+++|+.|+|++|.+....+. +.++++|+.|+|++|
T Consensus 221 ~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 221 LYGLNLTSLSITHCNLTA--VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp TTTCCCSEEEEESSCCCS--CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS
T ss_pred ccCccccEEECcCCcccc--cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC
Confidence 222355555555555554 4433445555555555555544433322 555555555555554
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=4.6e-24 Score=258.66 Aligned_cols=169 Identities=17% Similarity=0.098 Sum_probs=132.2
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHh-hhh
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRT-NIE 618 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~-~i~ 618 (965)
.++++|.+..+.+..++...+..+++|++|.+.++. +....|..|.++++|++|+|++|. +..+|. .++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~-------l~~l~~~~~~ 94 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT---ISKLEPELCQKLPMLKVLNLQHNE-------LSQLSDKTFA 94 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC---CCCCCTTHHHHCTTCCEEECCSSC-------CCCCCTTTTT
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc---cCccCHHHHhcccCcCEEECCCCc-------cCccChhhhc
Confidence 689999999999887777777799999999999876 445567889999999999999554 456665 589
Q ss_pred ccCCCcEEEeCCccCccccc-hhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccC--CCcccc
Q 002115 619 NLLHLKYLNLAHQREIEKLP-ETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGI--GELIRL 695 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i--~~l~~L 695 (965)
++++|++|+|++|. +..+| ..|+++++|++|++++|......|..+.++++|++|++++|......|..+ ..+++|
T Consensus 95 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 95 FCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173 (680)
T ss_dssp TCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred cCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence 99999999999999 66666 579999999999999998444556678899999999999985433333333 356889
Q ss_pred cccCceEecCccCCCCCccccccC
Q 002115 696 RIVKEFVVGGGYDRACSLGSLKKL 719 (965)
Q Consensus 696 ~~L~l~~~~~~~~~~~~~~~l~~L 719 (965)
+.|++..+......+..+..+.+|
T Consensus 174 ~~L~L~~n~l~~~~~~~~~~l~~L 197 (680)
T 1ziw_A 174 KKLELSSNQIKEFSPGCFHAIGRL 197 (680)
T ss_dssp SEEECTTCCCCCBCTTGGGGSSEE
T ss_pred cEEECCCCcccccChhhhhhhhhh
Confidence 999988776655334344444443
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=4.1e-23 Score=237.73 Aligned_cols=335 Identities=19% Similarity=0.228 Sum_probs=186.1
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhc
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIEN 619 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~ 619 (965)
..++.+.+..+.+..++. +..+++|++|.+.++.. .. ++. +.++++|++|++++|.+ ..++. +++
T Consensus 46 ~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l---~~-~~~-~~~l~~L~~L~l~~n~l-------~~~~~-~~~ 110 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQL---TD-ITP-LKNLTKLVDILMNNNQI-------ADITP-LAN 110 (466)
T ss_dssp HTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCC---CC-CGG-GTTCTTCCEEECCSSCC-------CCCGG-GTT
T ss_pred ccccEEecCCCCCccCcc--hhhhcCCCEEECCCCcc---CC-chh-hhccccCCEEECCCCcc-------ccChh-hcC
Confidence 356677776666654432 33677777777777653 23 233 67777777777774443 33343 677
Q ss_pred cCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccC
Q 002115 620 LLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVK 699 (965)
Q Consensus 620 L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 699 (965)
+++|++|++++|. +..+|. +.++++|++|++++|. +..+| .+..+++|++|+++++ ...++ .++++++|+.|+
T Consensus 111 l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~~--~~~~~-~~~~l~~L~~L~ 183 (466)
T 1o6v_A 111 LTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGNQ--VTDLK-PLANLTTLERLD 183 (466)
T ss_dssp CTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEES--CCCCG-GGTTCTTCCEEE
T ss_pred CCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCCc--ccCch-hhccCCCCCEEE
Confidence 7777777777777 666665 7777777777777776 55554 3666666666666432 22222 255666666666
Q ss_pred ceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChh---
Q 002115 700 EFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEED--- 776 (965)
Q Consensus 700 l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~--- 776 (965)
+..+.... +..+..+++|+.+.+........ ..+..+++|+.|++++|.+.+... +......+.
T Consensus 184 l~~n~l~~-----~~~l~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l 250 (466)
T 1o6v_A 184 ISSNKVSD-----ISVLAKLTNLESLIATNNQISDI------TPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDL 250 (466)
T ss_dssp CCSSCCCC-----CGGGGGCTTCSEEECCSSCCCCC------GGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEEC
T ss_pred CcCCcCCC-----ChhhccCCCCCEEEecCCccccc------ccccccCCCCEEECCCCCcccchh--hhcCCCCCEEEC
Confidence 55544332 12233333333333332211110 013334455555555554332100 000000000
Q ss_pred ---hhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCCCCceE
Q 002115 777 ---EDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGVQSVKR 853 (965)
Q Consensus 777 ---~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~~l~~ 853 (965)
.... ...+..+++|+.|++++|.+.. .+ . +..+++|+.|+|++|.+.. ++.++.+++|+.|+|++|. +
T Consensus 251 ~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~--~~-~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~-l-- 321 (466)
T 1o6v_A 251 ANNQISN-LAPLSGLTKLTELKLGANQISN--IS-P-LAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNN-I-- 321 (466)
T ss_dssp CSSCCCC-CGGGTTCTTCSEEECCSSCCCC--CG-G-GTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSC-C--
T ss_pred CCCcccc-chhhhcCCCCCEEECCCCccCc--cc-c-ccCCCccCeEEcCCCcccC-chhhcCCCCCCEEECcCCc-C--
Confidence 0000 0114455667777777766655 44 2 5566777777777775543 3336667777777776653 1
Q ss_pred eCccccCCCCCCCCccccCCcccccccccccccccccCcccccccccccCcccceEeeccCccCcCCCcCCCCCCCCCeE
Q 002115 854 VGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPDRLLQKTTLQAL 933 (965)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L 933 (965)
.+..+ ...+++|+.|++++|. +... ..+..+++|+.|++++|+.....| +..+++|+.|
T Consensus 322 -----~~~~~------~~~l~~L~~L~l~~n~-l~~~-------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 380 (466)
T 1o6v_A 322 -----SDISP------VSSLTKLQRLFFYNNK-VSDV-------SSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380 (466)
T ss_dssp -----SCCGG------GGGCTTCCEEECCSSC-CCCC-------GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred -----CCchh------hccCccCCEeECCCCc-cCCc-------hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence 11110 2367788888877763 3332 245678899999999887544334 7778899999
Q ss_pred eEcCCc
Q 002115 934 TIGECP 939 (965)
Q Consensus 934 ~l~~c~ 939 (965)
++++|+
T Consensus 381 ~l~~n~ 386 (466)
T 1o6v_A 381 GLNDQA 386 (466)
T ss_dssp ECCCEE
T ss_pred eccCCc
Confidence 998886
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=3.3e-23 Score=244.64 Aligned_cols=354 Identities=16% Similarity=0.106 Sum_probs=226.4
Q ss_pred EEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCC
Q 002115 543 LHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLH 622 (965)
Q Consensus 543 r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~ 622 (965)
+++.+.++++..+|...+ ++++.|.+.++. +....+..|.++++|++|+|++|.++ ...|..++++++
T Consensus 34 ~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls~N~l~------~~~~~~~~~l~~ 101 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP---PRTKALSLSQNS---ISELRMPDISFLSELRVLRLSHNRIR------SLDFHVFLFNQD 101 (562)
T ss_dssp CEEECTTSCCCSCCTTSC---TTCCEEECCSSC---CCCCCGGGTTTCTTCCEEECCSCCCC------EECTTTTTTCTT
T ss_pred cEEEcCCCCCccCCCCCC---CCcCEEECCCCC---ccccChhhhccCCCccEEECCCCCCC------cCCHHHhCCCCC
Confidence 677787887776776543 799999999987 44556678999999999999966553 223677999999
Q ss_pred CcEEEeCCccCccccchhhhccCCCcEEeccCccccccc--CccccCCCCccEeecCCCcccccccccCCCcccc--ccc
Q 002115 623 LKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLREL--PQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRL--RIV 698 (965)
Q Consensus 623 Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~l--P~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L--~~L 698 (965)
|++|+|++|. +..+|.. .+++|++|++++|. +..+ |..+.++++|++|++++|.... ..+..+++| +.|
T Consensus 102 L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L 174 (562)
T 3a79_B 102 LEYLDVSHNR-LQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCI 174 (562)
T ss_dssp CCEEECTTSC-CCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEE
T ss_pred CCEEECCCCc-CCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEE
Confidence 9999999999 8899986 89999999999998 6655 4789999999999999985433 345666666 999
Q ss_pred CceEecC--ccCCCCCccccc-----------------------cCCcCCcceeeccCC---------------------
Q 002115 699 KEFVVGG--GYDRACSLGSLK-----------------------KLNLLRYCRIHGLGD--------------------- 732 (965)
Q Consensus 699 ~l~~~~~--~~~~~~~~~~l~-----------------------~L~~L~~l~~~~~~~--------------------- 732 (965)
++..+.. ....+..+..+. .+++|+.+.+.....
T Consensus 175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L 254 (562)
T 3a79_B 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV 254 (562)
T ss_dssp EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEE
T ss_pred EeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEE
Confidence 8888766 332222232221 222333333322100
Q ss_pred ------CCC-HhHHHHhhccCCCCCCceEEEeeccCCCCcccc-----cCCCCChh---------hhHHhhhc-------
Q 002115 733 ------VSD-AGEARRAELEKKKNLSNLELHFDHLRDGDEEQA-----GRRDNEED---------EDERLLEA------- 784 (965)
Q Consensus 733 ------~~~-~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~-----~~~~~~~~---------~~~~~~~~------- 784 (965)
+.. ........ ...++|+.|+++.|.+++..+..+ ........ .....+..
T Consensus 255 ~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L 333 (562)
T 3a79_B 255 TLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333 (562)
T ss_dssp EEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCC
T ss_pred EecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcc
Confidence 000 00000111 122478888888888765433321 11000000 00000000
Q ss_pred ---------------CCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCC--CC-CCCCCCCcceeeec
Q 002115 785 ---------------LGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEH--LP-PLGKLPSIEVLEIY 846 (965)
Q Consensus 785 ---------------l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~--lp-~l~~L~~L~~L~L~ 846 (965)
...+++|+.|++++|.+... .| .++..+++|+.|+|++|.+... +| .++++++|++|+++
T Consensus 334 ~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS-VF-QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT-TT-TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred eEEEccCCCcccccCccCCCCceEEECCCCccccc-hh-hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence 04556777777777766552 23 5566777777777777765542 22 26677777777777
Q ss_pred CCCCceEeCccccCCCCCCCCccccCCcccccccccccccccccCcccccccccccC-cccceEeeccCccCcCCCcCCC
Q 002115 847 GVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIM-PRLSSLSIRRCPKLKALPDRLL 925 (965)
Q Consensus 847 ~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~-~~L~~L~L~~c~~l~~lp~~l~ 925 (965)
+|.-...++... ...+++|+.|+++++. +. +..|. .+ ++|+.|+|++|. ++.+|..+.
T Consensus 412 ~N~l~~~~~~~~-----------~~~l~~L~~L~l~~n~-l~-----~~~~~---~l~~~L~~L~L~~N~-l~~ip~~~~ 470 (562)
T 3a79_B 412 LNSLNSHAYDRT-----------CAWAESILVLNLSSNM-LT-----GSVFR---CLPPKVKVLDLHNNR-IMSIPKDVT 470 (562)
T ss_dssp TSCCBSCCSSCC-----------CCCCTTCCEEECCSSC-CC-----GGGGS---SCCTTCSEEECCSSC-CCCCCTTTT
T ss_pred CCcCCCccChhh-----------hcCcccCCEEECCCCC-CC-----cchhh---hhcCcCCEEECCCCc-CcccChhhc
Confidence 654211121111 2356788888877764 32 22222 23 699999999995 778999888
Q ss_pred CCCCCCeEeEcCCc
Q 002115 926 QKTTLQALTIGECP 939 (965)
Q Consensus 926 ~l~~L~~L~l~~c~ 939 (965)
.+++|++|++++|.
T Consensus 471 ~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 471 HLQALQELNVASNQ 484 (562)
T ss_dssp SSCCCSEEECCSSC
T ss_pred CCCCCCEEECCCCC
Confidence 99999999999986
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=5.1e-23 Score=236.79 Aligned_cols=334 Identities=14% Similarity=0.149 Sum_probs=235.4
Q ss_pred CceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhH-HhhhhccCCCcEEEeCCccCccccchhhh
Q 002115 564 KRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEV-RTNIENLLHLKYLNLAHQREIEKLPETLC 642 (965)
Q Consensus 564 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~l-p~~i~~L~~Lr~L~L~~~~~i~~lp~~i~ 642 (965)
++|++|.+.++. +....|..|.++++|++|+|++|.+. ..+ |..+.++++|++|+|++|.+....|..++
T Consensus 30 ~~l~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~n~~~------~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 30 AHVNYVDLSLNS---IAELNETSFSRLQDLQFLKVEQQTPG------LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp TTCCEEECCSSC---CCEECTTTTSSCTTCCEEECCCCSTT------CEECTTTTTTCTTCCEEECTTCTTCEECTTTTT
T ss_pred CccCEEEecCCc---cCcCChhHhccCccccEEECcCCccc------ceECcccccccccCCEEeCCCCccCccChhhcc
Confidence 789999999986 44556778999999999999965542 233 46789999999999999994344578899
Q ss_pred ccCCCcEEeccCcccccccCcc--ccCCCCccEeecCCCccccccccc-CCCcccccccCceEecCccCCCCCcccc--c
Q 002115 643 ELYNLEHLDISYCRNLRELPQG--IGKLRKLMYLENDGTYSLRYLPVG-IGELIRLRIVKEFVVGGGYDRACSLGSL--K 717 (965)
Q Consensus 643 ~L~~L~~LdL~~~~~l~~lP~~--i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~l--~ 717 (965)
++++|++|++++|......|.. +..+++|++|++++|......|.. ++++++|+.|++..+......+..+..+ .
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 180 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTC
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccc
Confidence 9999999999999843345555 889999999999999655555665 8899999999998887765444444444 2
Q ss_pred cCCcCCcceeeccCCCCC--HhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEE
Q 002115 718 KLNLLRYCRIHGLGDVSD--AGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELR 795 (965)
Q Consensus 718 ~L~~L~~l~~~~~~~~~~--~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 795 (965)
+|+.|....+.. ..++. ........+..+++|+.|++++|.+.+.. ...+. .....++|+.|.
T Consensus 181 ~L~~L~l~~n~l-~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-------------~~~~~-~~~~~~~L~~L~ 245 (455)
T 3v47_A 181 HFTLLRLSSITL-QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM-------------AKRFF-DAIAGTKIQSLI 245 (455)
T ss_dssp EEEEEECTTCBC-TTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH-------------HHHHH-HHTTTCCEEEEE
T ss_pred cccccccccCcc-cccchhhccccccccccccceeeeEecCCCcccccc-------------hhhhh-ccccccceeeEe
Confidence 233222211111 11111 01111223445678999999998654321 11122 222357899999
Q ss_pred EeeecCCCCCCC--------hhhHh--hccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCCCCceEeCccccCCCCC
Q 002115 796 IYQYRGRRNVVP--------KIWIT--SLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGVQSVKRVGNEFLGVESD 864 (965)
Q Consensus 796 L~~~~~~~~~~p--------~~~~~--~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~ 864 (965)
+++|......+. ...+. .+++|+.|+|++|.+....|. ++.+++|++|+|++|. +..+....
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~------ 318 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNA------ 318 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTT------
T ss_pred eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhH------
Confidence 988854431111 01122 247899999999998877776 8999999999999876 33322211
Q ss_pred CCCccccCCcccccccccccccccccCcccccccccccCcccceEeeccCccCcCCCcCCCCCCCCCeEeEcCCc
Q 002115 865 TDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPDRLLQKTTLQALTIGECP 939 (965)
Q Consensus 865 ~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 939 (965)
+..+++|+.|+++++. +.+..|..+..+++|+.|+|++|......|..+..+++|++|++++|.
T Consensus 319 -----~~~l~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 319 -----FWGLTHLLKLNLSQNF------LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp -----TTTCTTCCEEECCSSC------CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred -----hcCcccCCEEECCCCc------cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 2368999999988764 333345667789999999999998655568889999999999999986
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=9.6e-23 Score=251.93 Aligned_cols=347 Identities=15% Similarity=0.134 Sum_probs=216.6
Q ss_pred EeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhH-HhhhhccCCCcEE
Q 002115 548 NLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEV-RTNIENLLHLKYL 626 (965)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~l-p~~i~~L~~Lr~L 626 (965)
..++...+|. ..++++.|+++++. +....|..|.++++|++|+|++|.. +..+ |..++++++|++|
T Consensus 12 s~~~L~~vP~----lp~~l~~LdLs~N~---i~~i~~~~~~~l~~L~~LdLs~n~~------~~~i~~~~f~~L~~L~~L 78 (844)
T 3j0a_A 12 RFCNLTQVPQ----VLNTTERLLLSFNY---IRTVTASSFPFLEQLQLLELGSQYT------PLTIDKEAFRNLPNLRIL 78 (844)
T ss_dssp SCCCSSCCCS----SCTTCCEEEEESCC---CCEECSSSCSSCCSCSEEEECTTCC------CCEECTTTTSSCTTCCEE
T ss_pred cCCCCCCCCC----CCCCcCEEECCCCc---CCccChhHCcccccCeEEeCCCCCC------ccccCHHHhcCCCCCCEE
Confidence 3444554554 34789999999986 4455677799999999999996532 2445 6789999999999
Q ss_pred EeCCccCccccchhhhccCCCcEEeccCcccccccCcc--ccCCCCccEeecCCCccccccc-ccCCCcccccccCceEe
Q 002115 627 NLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQG--IGKLRKLMYLENDGTYSLRYLP-VGIGELIRLRIVKEFVV 703 (965)
Q Consensus 627 ~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~--i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~ 703 (965)
+|++|.+....|..|+++++|++|+|++|.....+|.. +.++++|++|++++|......| ..++++++|++|++..+
T Consensus 79 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp ECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred ECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 99999944445889999999999999999844446665 8999999999999996544333 56999999999999988
Q ss_pred cCccCCCCCcccc--ccCCcCCcceeeccCCCCCHhHHHHhhccCCC------CCCceEEEeeccCCCCcccccCCCCC-
Q 002115 704 GGGYDRACSLGSL--KKLNLLRYCRIHGLGDVSDAGEARRAELEKKK------NLSNLELHFDHLRDGDEEQAGRRDNE- 774 (965)
Q Consensus 704 ~~~~~~~~~~~~l--~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~------~L~~L~L~~~~l~~~~~~~~~~~~~~- 774 (965)
......+..+..+ .+|+.|....+......+ ..+..+. +|+.|++++|.+....+..+......
T Consensus 159 ~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~-------~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~ 231 (844)
T 3j0a_A 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS-------VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231 (844)
T ss_dssp CCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCC-------CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred cCCeeCHHHcccccCCccceEECCCCccccccc-------cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence 7765444445544 344444322222222222 1122222 48999999887654333221110000
Q ss_pred ------------------hhhhHHhhhcCCC--CCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-
Q 002115 775 ------------------EDEDERLLEALGP--PPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP- 833 (965)
Q Consensus 775 ------------------~~~~~~~~~~l~~--~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~- 833 (965)
..........+.. +++|+.|++++|.+.. .++.++..+++|+.|+|++|.+....|.
T Consensus 232 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 309 (844)
T 3j0a_A 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS--LNSRVFETLKDLKVLNLAYNKINKIADEA 309 (844)
T ss_dssp CBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE--ECSCCSSSCCCCCEEEEESCCCCEECTTT
T ss_pred cccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc--cChhhhhcCCCCCEEECCCCcCCCCChHH
Confidence 0000000111111 3577777777777665 3335667777777777777776655554
Q ss_pred CCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccccccccccccccccCcccccccccccCcccceEeecc
Q 002115 834 LGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRR 913 (965)
Q Consensus 834 l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~ 913 (965)
++++++|++|+|++|. +..+.. ..+..+++|+.|+++++. + ....+..+..+++|+.|+|++
T Consensus 310 ~~~l~~L~~L~Ls~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N~-i-----~~~~~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 310 FYGLDNLQVLNLSYNL-LGELYS-----------SNFYGLPKVAYIDLQKNH-I-----AIIQDQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp TTTCSSCCEEEEESCC-CSCCCS-----------CSCSSCTTCCEEECCSCC-C-----CCCCSSCSCSCCCCCEEEEET
T ss_pred hcCCCCCCEEECCCCC-CCccCH-----------HHhcCCCCCCEEECCCCC-C-----CccChhhhcCCCCCCEEECCC
Confidence 7777777777777754 211111 012356677777766552 2 222223455666777777776
Q ss_pred CccCcCCCcCCCCCCCCCeEeEcCCc
Q 002115 914 CPKLKALPDRLLQKTTLQALTIGECP 939 (965)
Q Consensus 914 c~~l~~lp~~l~~l~~L~~L~l~~c~ 939 (965)
|. +..++. +++|+.|++++|+
T Consensus 372 N~-l~~i~~----~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 372 NA-LTTIHF----IPSIPDIFLSGNK 392 (844)
T ss_dssp CC-SCCCSS----CCSCSEEEEESCC
T ss_pred CC-CCcccC----CCCcchhccCCCC
Confidence 65 333332 4555555555553
No 31
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=9.8e-23 Score=246.99 Aligned_cols=368 Identities=15% Similarity=0.077 Sum_probs=207.4
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHH-hhhh
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVR-TNIE 618 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp-~~i~ 618 (965)
..+++|.+..+.+.......+..+++|++|.+.++. +....+..|.++++|++|+|++|.+ ..+| ..++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~l~~~~~~~l~~L~~L~L~~n~l-------~~~~~~~~~ 118 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE---LSQLSDKTFAFCTNLTELHLMSNSI-------QKIKNNPFV 118 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCC-------CCCCSCTTT
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc---cCccChhhhccCCCCCEEECCCCcc-------CccChhHcc
Confidence 578888888888776666667789999999998876 3343445688999999999995554 4444 5688
Q ss_pred ccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCcc-c--cCCCCccEeecCCCcccccccccCCCcccc
Q 002115 619 NLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQG-I--GKLRKLMYLENDGTYSLRYLPVGIGELIRL 695 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~-i--~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 695 (965)
++++|++|+|++|.+....|..++++++|++|++++|. +..++.. + ..+++|++|++++|......|..++.+.+|
T Consensus 119 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 197 (680)
T 1ziw_A 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197 (680)
T ss_dssp TCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEE
T ss_pred ccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhh
Confidence 89999999999998444456678889999999999987 5555543 3 356888999998885544445445554444
Q ss_pred c---------------------------ccCceEecCccCCCCCccccccCCcCCcceeeccC--CCCCHhHHHHhhccC
Q 002115 696 R---------------------------IVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLG--DVSDAGEARRAELEK 746 (965)
Q Consensus 696 ~---------------------------~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~--~~~~~~~~~~~~l~~ 746 (965)
+ .|++..+......+..+..+.. ++|+.+.+.... .++ ...+..
T Consensus 198 ~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~-~~L~~L~Ls~n~l~~~~------~~~~~~ 270 (680)
T 1ziw_A 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW-TNLTMLDLSYNNLNVVG------NDSFAW 270 (680)
T ss_dssp CEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGG-SCCCEEECTTSCCCEEC------TTTTTT
T ss_pred hhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCc-CCCCEEECCCCCcCccC------cccccC
Confidence 3 3333333322222222333322 113333222211 111 123556
Q ss_pred CCCCCceEEEeeccCCCCcccccCCCCChhh------------hHHhhh----cCCCCCCCceEEEeeecCCCCCCChhh
Q 002115 747 KKNLSNLELHFDHLRDGDEEQAGRRDNEEDE------------DERLLE----ALGPPPNLKELRIYQYRGRRNVVPKIW 810 (965)
Q Consensus 747 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~------------~~~~~~----~l~~~~~L~~L~L~~~~~~~~~~p~~~ 810 (965)
+++|+.|++++|.+.+..+..+......... ...++. .+..+++|+.|++++|.+.. .++.+
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~--~~~~~ 348 (680)
T 1ziw_A 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG--IKSNM 348 (680)
T ss_dssp CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC--CCTTT
T ss_pred cccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC--CChhH
Confidence 6777777777776544332222111110000 001111 34556777777777776665 43355
Q ss_pred HhhccCCcEEEEecCC----------------------------CCCCCCC-CCCCCCcceeeecCCCCceEeCccccCC
Q 002115 811 ITSLTNLRVLSLFECR----------------------------NCEHLPP-LGKLPSIEVLEIYGVQSVKRVGNEFLGV 861 (965)
Q Consensus 811 ~~~l~~L~~L~L~~~~----------------------------~~~~lp~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~ 861 (965)
+..+++|++|+|++|. +....|. ++.+++|+.|+|++|.....++...
T Consensus 349 ~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--- 425 (680)
T 1ziw_A 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE--- 425 (680)
T ss_dssp TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGG---
T ss_pred hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccc---
Confidence 6666666666665543 2222222 5566667777776654222222111
Q ss_pred CCCCCCccccCCcccccccccccc-------------cccccC-----cc--cccccccccCcccceEeeccCccCcCCC
Q 002115 862 ESDTDGSSVIAFPKLKQLRFDEMD-------------VLEEWD-----FG--TAINGEIMIMPRLSSLSIRRCPKLKALP 921 (965)
Q Consensus 862 ~~~~~~~~~~~f~~L~~L~l~~~~-------------~L~~~~-----~~--~~~~~~~~~~~~L~~L~L~~c~~l~~lp 921 (965)
...+++|+.|++++|. .|+... +. +..|..+..+++|+.|++++|.. ..+|
T Consensus 426 --------~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l-~~i~ 496 (680)
T 1ziw_A 426 --------WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI-ANIN 496 (680)
T ss_dssp --------GTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCC-CCCC
T ss_pred --------ccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCC-CcCC
Confidence 1134444444444332 111110 10 23455566777777777777753 3444
Q ss_pred -cCCCCCCCCCeEeEcCCc
Q 002115 922 -DRLLQKTTLQALTIGECP 939 (965)
Q Consensus 922 -~~l~~l~~L~~L~l~~c~ 939 (965)
..+..+++|++|++++|.
T Consensus 497 ~~~~~~l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 497 DDMLEGLEKLEILDLQHNN 515 (680)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred hhhhccccccCEEeCCCCC
Confidence 346667777777777765
No 32
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=2.7e-23 Score=246.63 Aligned_cols=144 Identities=19% Similarity=0.150 Sum_probs=115.6
Q ss_pred CceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhH-HhhhhccCCCcEEEeCCccCccccc-hhh
Q 002115 564 KRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEV-RTNIENLLHLKYLNLAHQREIEKLP-ETL 641 (965)
Q Consensus 564 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~l-p~~i~~L~~Lr~L~L~~~~~i~~lp-~~i 641 (965)
++++.|.+.++. +....+..|.++++|++|+|++|.+ ..+ |..++++++|++|+|++|. +..+| ..|
T Consensus 28 ~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~i-------~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 96 (570)
T 2z63_A 28 FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCEI-------QTIEDGAYQSLSHLSTLILTGNP-IQSLALGAF 96 (570)
T ss_dssp SSCCEEECCSCC---CCEECTTTTTTCSSCCEEECTTCCC-------CEECTTTTTTCTTCCEEECTTCC-CCEECTTTT
T ss_pred ccccEEEccCCc---cCccChhHhhCCCCceEEECCCCcC-------CccCcccccCchhCCEEeCcCCc-CCccCHhhh
Confidence 579999999987 4444566799999999999996554 444 4678999999999999999 66665 689
Q ss_pred hccCCCcEEeccCcccccccCc-cccCCCCccEeecCCCcccc-cccccCCCcccccccCceEecCccCCCCCccccccC
Q 002115 642 CELYNLEHLDISYCRNLRELPQ-GIGKLRKLMYLENDGTYSLR-YLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKL 719 (965)
Q Consensus 642 ~~L~~L~~LdL~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 719 (965)
+++++|++|++++|. +..+|. .++++++|++|++++|.... .+|..++++++|++|++..+......+..+..+.+|
T Consensus 97 ~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred cCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 999999999999998 777765 58999999999999995443 479999999999999998776654333344444444
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=5.6e-23 Score=231.03 Aligned_cols=305 Identities=14% Similarity=0.110 Sum_probs=231.0
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhH-Hhhhh
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEV-RTNIE 618 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~l-p~~i~ 618 (965)
.+++.+.+.++.+..++...+..+++|++|.+.++. +....+..|..+++|++|+|++|.+ ..+ |..++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l-------~~~~~~~~~ 114 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNAI-------RYLPPHVFQ 114 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCC-------CCCCTTTTT
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCc---ccccChhhccCCCCcCEEECCCCCC-------CcCCHHHhc
Confidence 678999999998888888888899999999999886 4454566799999999999996654 444 45689
Q ss_pred ccCCCcEEEeCCccCccccchh-hhccCCCcEEeccCccccccc-CccccCCCCccEeecCCCcccccccccCCCccccc
Q 002115 619 NLLHLKYLNLAHQREIEKLPET-LCELYNLEHLDISYCRNLREL-PQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLR 696 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~LdL~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 696 (965)
++++|++|+|++|. +..+|.. +.++++|++|++++|. +..+ |..+..+++|++|++++|. +..+ .++.+++|+
T Consensus 115 ~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~~~~l~~L~ 189 (390)
T 3o6n_A 115 NVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR-LTHV--DLSLIPSLF 189 (390)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSC-CSBC--CGGGCTTCS
T ss_pred CCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCc-CCcc--ccccccccc
Confidence 99999999999999 8889876 5899999999999998 5555 5568999999999999994 4444 366788888
Q ss_pred ccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChh
Q 002115 697 IVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEED 776 (965)
Q Consensus 697 ~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 776 (965)
.|++..+.... +.....|+.+.+....... ......++|+.|++++|.+++.
T Consensus 190 ~L~l~~n~l~~--------~~~~~~L~~L~l~~n~l~~-------~~~~~~~~L~~L~l~~n~l~~~------------- 241 (390)
T 3o6n_A 190 HANVSYNLLST--------LAIPIAVEELDASHNSINV-------VRGPVNVELTILKLQHNNLTDT------------- 241 (390)
T ss_dssp EEECCSSCCSE--------EECCSSCSEEECCSSCCCE-------EECCCCSSCCEEECCSSCCCCC-------------
T ss_pred eeecccccccc--------cCCCCcceEEECCCCeeee-------ccccccccccEEECCCCCCccc-------------
Confidence 88877654432 2333344444443321110 0112346899999999976432
Q ss_pred hhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCCCCceEeCc
Q 002115 777 EDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGVQSVKRVGN 856 (965)
Q Consensus 777 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~~l~~~~~ 856 (965)
..+..+++|+.|++++|.+.. .++..+..+++|+.|+|++|.+....+.++.+|+|++|+|++|. +..++.
T Consensus 242 ------~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 312 (390)
T 3o6n_A 242 ------AWLLNYPGLVEVDLSYNELEK--IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVER 312 (390)
T ss_dssp ------GGGGGCTTCSEEECCSSCCCE--EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGG
T ss_pred ------HHHcCCCCccEEECCCCcCCC--cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCc
Confidence 345678899999999999877 43378889999999999999876644447789999999999975 332222
Q ss_pred cccCCCCCCCCccccCCcccccccccccccccccCcccccccccccCcccceEeeccCccC
Q 002115 857 EFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKL 917 (965)
Q Consensus 857 ~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 917 (965)
. ...+++|+.|++++++ +.... +..+++|+.|+|++|+.-
T Consensus 313 ~------------~~~l~~L~~L~L~~N~-i~~~~--------~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 313 N------------QPQFDRLENLYLDHNS-IVTLK--------LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp G------------HHHHTTCSEEECCSSC-CCCCC--------CCTTCCCSEEECCSSCEE
T ss_pred c------------ccccCcCCEEECCCCc-cceeC--------chhhccCCEEEcCCCCcc
Confidence 1 2368999999998875 44432 447899999999999853
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=4.6e-23 Score=243.34 Aligned_cols=331 Identities=14% Similarity=0.113 Sum_probs=212.8
Q ss_pred CCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeC
Q 002115 550 DGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLA 629 (965)
Q Consensus 550 ~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~ 629 (965)
++...+|...+ ++|++|.+.++. +....|..|.++++|++|+|++|.++ ...|..++++++|++|+|+
T Consensus 15 ~~l~~ip~~~~---~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 15 RSFTSIPSGLT---AAMKSLDLSFNK---ITYIGHGDLRACANLQVLILKSSRIN------TIEGDAFYSLGSLEHLDLS 82 (549)
T ss_dssp SCCSSCCSCCC---TTCCEEECCSSC---CCEECSSTTSSCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECT
T ss_pred CccccccccCC---CCccEEECcCCc---cCccChhhhhcCCcccEEECCCCCcC------ccChhhccccccCCEEECC
Confidence 34444555433 789999999987 44555677999999999999966553 2234679999999999999
Q ss_pred CccCccccch-hhhccCCCcEEeccCccccc--ccCccccCCCCccEeecCCCccccccc-ccCCCcccccccCceEecC
Q 002115 630 HQREIEKLPE-TLCELYNLEHLDISYCRNLR--ELPQGIGKLRKLMYLENDGTYSLRYLP-VGIGELIRLRIVKEFVVGG 705 (965)
Q Consensus 630 ~~~~i~~lp~-~i~~L~~L~~LdL~~~~~l~--~lP~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~ 705 (965)
+|. +..+|. .++++++|++|++++|. +. ..|..+.++++|++|++++|.....+| ..++++++|+.|++..+..
T Consensus 83 ~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 83 DNH-LSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp TSC-CCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCc-cCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 999 666665 59999999999999998 55 457789999999999999997567776 5799999999999998887
Q ss_pred ccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCccc--c----cCCCCC-----
Q 002115 706 GYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQ--A----GRRDNE----- 774 (965)
Q Consensus 706 ~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~--~----~~~~~~----- 774 (965)
....+..+..++ +|+.+.+..... .... ...+..+++|+.|++++|.+++..... . ......
T Consensus 161 ~~~~~~~l~~l~---~L~~L~l~~n~~-~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 233 (549)
T 2z81_A 161 RNYQSQSLKSIR---DIHHLTLHLSES-AFLL---EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233 (549)
T ss_dssp CEECTTTTTTCS---EEEEEEEECSBS-TTHH---HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred cccChhhhhccc---cCceEecccCcc-cccc---hhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence 654444444444 444444433221 1111 122345678888888888776531000 0 000000
Q ss_pred ---hhhhHHhhh------------------------------cCC-----------------------------CCCCCc
Q 002115 775 ---EDEDERLLE------------------------------ALG-----------------------------PPPNLK 792 (965)
Q Consensus 775 ---~~~~~~~~~------------------------------~l~-----------------------------~~~~L~ 792 (965)
......+.. .+. ..++|+
T Consensus 234 ~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~ 313 (549)
T 2z81_A 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313 (549)
T ss_dssp EEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCC
T ss_pred ccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccce
Confidence 000000000 001 124677
Q ss_pred eEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCC----CCCCCCCcceeeecCCCCceEeCccccCCCCCCCCc
Q 002115 793 ELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLP----PLGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGS 868 (965)
Q Consensus 793 ~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp----~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 868 (965)
.|++++|.+.. +|..++..+++|+.|+|++|.+.+.+| .++.+++|++|+|++|. ++.++.. + .
T Consensus 314 ~L~l~~n~l~~--ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~--~-------~ 381 (549)
T 2z81_A 314 RITVENSKVFL--VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKT--G-------E 381 (549)
T ss_dssp EEEEESSCCCC--CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHH--H-------H
T ss_pred EEEeccCcccc--CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccc--h-------h
Confidence 77777777665 773444578889999999888776442 26788888888888864 2211100 0 0
Q ss_pred cccCCcccccccccccccccccCcccccccccccCcccceEeeccCccCcCCC
Q 002115 869 SVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALP 921 (965)
Q Consensus 869 ~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp 921 (965)
.+..+++|+.|++++|. ++ .+|..+..+++|+.|++++|. +..+|
T Consensus 382 ~~~~l~~L~~L~Ls~N~-l~------~lp~~~~~~~~L~~L~Ls~N~-l~~l~ 426 (549)
T 2z81_A 382 ILLTLKNLTSLDISRNT-FH------PMPDSCQWPEKMRFLNLSSTG-IRVVK 426 (549)
T ss_dssp HGGGCTTCCEEECTTCC-CC------CCCSCCCCCTTCCEEECTTSC-CSCCC
T ss_pred hhhcCCCCCEEECCCCC-Cc------cCChhhcccccccEEECCCCC-ccccc
Confidence 02357778888777663 33 234445556666666666665 34444
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=3.4e-22 Score=230.10 Aligned_cols=318 Identities=17% Similarity=0.208 Sum_probs=206.5
Q ss_pred hcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhh
Q 002115 562 HVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETL 641 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i 641 (965)
.++++++|.+.++... . +|. +..+++|++|+|++|.+ ..+|. ++++++|++|++++|. +..+|. +
T Consensus 44 ~l~~l~~L~l~~~~i~---~-l~~-~~~l~~L~~L~Ls~n~l-------~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~ 108 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK---S-IDG-VEYLNNLTQINFSNNQL-------TDITP-LKNLTKLVDILMNNNQ-IADITP-L 108 (466)
T ss_dssp HHHTCCEEECCSSCCC---C-CTT-GGGCTTCCEEECCSSCC-------CCCGG-GTTCTTCCEEECCSSC-CCCCGG-G
T ss_pred HhccccEEecCCCCCc---c-Ccc-hhhhcCCCEEECCCCcc-------CCchh-hhccccCCEEECCCCc-cccChh-h
Confidence 6789999999887643 2 444 88899999999995554 45555 8999999999999999 888887 9
Q ss_pred hccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCc
Q 002115 642 CELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNL 721 (965)
Q Consensus 642 ~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 721 (965)
+++++|++|++++|. +..+|. +.++++|++|++++| .+..+| .++.+++|+.|.+.. .... +..+..++.
T Consensus 109 ~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~-~~~~-----~~~~~~l~~ 178 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQLSFGN-QVTD-----LKPLANLTT 178 (466)
T ss_dssp TTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEE-EECCCG-GGTTCTTCSEEEEEE-SCCC-----CGGGTTCTT
T ss_pred cCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCC-ccCCCh-hhccCCcccEeecCC-cccC-----chhhccCCC
Confidence 999999999999998 777775 899999999999998 455555 489999999999853 2222 233556666
Q ss_pred CCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCccc-ccCCCCChh--hhHHhhhcCCCCCCCceEEEee
Q 002115 722 LRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQ-AGRRDNEED--EDERLLEALGPPPNLKELRIYQ 798 (965)
Q Consensus 722 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~~~--~~~~~~~~l~~~~~L~~L~L~~ 798 (965)
|+.+.+....... . ..+..+++|+.|++++|.+.+..+.. ......... ........+..+++|+.|++++
T Consensus 179 L~~L~l~~n~l~~-~-----~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 179 LERLDISSNKVSD-I-----SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 252 (466)
T ss_dssp CCEEECCSSCCCC-C-----GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCS
T ss_pred CCEEECcCCcCCC-C-----hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCC
Confidence 6666655432211 1 24678899999999999776543210 000000000 0000012233445555555555
Q ss_pred ecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCccccc
Q 002115 799 YRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQ 878 (965)
Q Consensus 799 ~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~ 878 (965)
|.+.. .+ . +..+++|+.|+|++|.+.. ++.++.+++|+.|++++|. + .+.. ....+++|+.
T Consensus 253 n~l~~--~~-~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~-l-------~~~~------~~~~l~~L~~ 313 (466)
T 1o6v_A 253 NQISN--LA-P-LSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQ-L-------EDIS------PISNLKNLTY 313 (466)
T ss_dssp SCCCC--CG-G-GTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSC-C-------SCCG------GGGGCTTCSE
T ss_pred Ccccc--ch-h-hhcCCCCCEEECCCCccCc-cccccCCCccCeEEcCCCc-c-------cCch------hhcCCCCCCE
Confidence 55444 33 1 4455555555555554433 2225555556666655543 1 1110 1235677777
Q ss_pred ccccccccccccCcccccccccccCcccceEeeccCccCcCCCcCCCCCCCCCeEeEcCCc
Q 002115 879 LRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPDRLLQKTTLQALTIGECP 939 (965)
Q Consensus 879 L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 939 (965)
|++++|. +.. ..| +..+++|+.|++++|+ +..++ .+..+++|+.|++++|+
T Consensus 314 L~L~~n~-l~~-----~~~--~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 314 LTLYFNN-ISD-----ISP--VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp EECCSSC-CSC-----CGG--GGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSC
T ss_pred EECcCCc-CCC-----chh--hccCccCCEeECCCCc-cCCch-hhccCCCCCEEeCCCCc
Confidence 7776663 322 212 5578899999999886 55554 67788999999999886
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=2e-22 Score=222.85 Aligned_cols=302 Identities=16% Similarity=0.203 Sum_probs=229.4
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhc
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIEN 619 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~ 619 (965)
+.++++.+.++.+..++. +..+++|++|.+.++.. .. ++. |..+++|++|++++|.+ ..+| .+.+
T Consensus 44 ~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i---~~-~~~-~~~l~~L~~L~L~~n~i-------~~~~-~~~~ 108 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQI---TD-ISP-LSNLVKLTNLYIGTNKI-------TDIS-ALQN 108 (347)
T ss_dssp TTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCC---CC-CGG-GTTCTTCCEEECCSSCC-------CCCG-GGTT
T ss_pred ccccEEEEeCCccccchh--hhhcCCccEEEccCCcc---cc-chh-hhcCCcCCEEEccCCcc-------cCch-HHcC
Confidence 578889998888775543 45899999999999863 33 343 89999999999996654 3444 5899
Q ss_pred cCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccC
Q 002115 620 LLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVK 699 (965)
Q Consensus 620 L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 699 (965)
+++|++|++++|. +..+|. +.++++|++|++++|.....+| .+..+++|++|++++|. +..++. ++.+++|+.|+
T Consensus 109 l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~ 183 (347)
T 4fmz_A 109 LTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLS 183 (347)
T ss_dssp CTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEE
T ss_pred CCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEE
Confidence 9999999999999 888887 9999999999999997566554 58999999999999984 444544 88999999999
Q ss_pred ceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhH
Q 002115 700 EFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDE 779 (965)
Q Consensus 700 l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~ 779 (965)
+..+.... +..+..++.|+.+.+........ ..+..+++|+.|++++|.++..
T Consensus 184 l~~n~l~~-----~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~l~~~---------------- 236 (347)
T 4fmz_A 184 LNYNQIED-----ISPLASLTSLHYFTAYVNQITDI------TPVANMTRLNSLKIGNNKITDL---------------- 236 (347)
T ss_dssp CTTSCCCC-----CGGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCCEEECCSSCCCCC----------------
T ss_pred ccCCcccc-----cccccCCCccceeecccCCCCCC------chhhcCCcCCEEEccCCccCCC----------------
Confidence 88776654 22355666666555554322211 1267889999999999966432
Q ss_pred HhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCCCCceEeCcccc
Q 002115 780 RLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGVQSVKRVGNEFL 859 (965)
Q Consensus 780 ~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~~l~~~~~~~~ 859 (965)
..+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.. ++.++.+++|+.|++++|.. ...+..
T Consensus 237 ---~~~~~l~~L~~L~l~~n~l~~--~~--~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~-- 305 (347)
T 4fmz_A 237 ---SPLANLSQLTWLEIGTNQISD--IN--AVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQL-GNEDME-- 305 (347)
T ss_dssp ---GGGTTCTTCCEEECCSSCCCC--CG--GGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCC-CGGGHH--
T ss_pred ---cchhcCCCCCEEECCCCccCC--Ch--hHhcCCCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCcC-CCcChh--
Confidence 126678999999999998877 54 57889999999999997665 47789999999999999762 111111
Q ss_pred CCCCCCCCccccCCcccccccccccccccccCcccccccccccCcccceEeeccCcc
Q 002115 860 GVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPK 916 (965)
Q Consensus 860 ~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~ 916 (965)
.+..+++|+.|++++|+ +... .| +..+++|+.|+|++|+.
T Consensus 306 ---------~l~~l~~L~~L~L~~n~-l~~~-----~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 306 ---------VIGGLTNLTTLFLSQNH-ITDI-----RP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp ---------HHHTCTTCSEEECCSSS-CCCC-----GG--GGGCTTCSEESSSCC--
T ss_pred ---------HhhccccCCEEEccCCc-cccc-----cC--hhhhhccceeehhhhcc
Confidence 12368999999998876 4332 22 56899999999999974
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=9.1e-23 Score=242.18 Aligned_cols=305 Identities=14% Similarity=0.100 Sum_probs=229.7
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhH-Hhhhh
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEV-RTNIE 618 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~l-p~~i~ 618 (965)
..++.+.+.++.+..++...+..+++|++|.+.++. +....|..|..+++|++|+|++|.++ .+ |..++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~ 120 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNAIR-------YLPPHVFQ 120 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCC-------CCCTTTTT
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC---CCCCChHHhcCCCCCCEEECCCCcCC-------CCCHHHHc
Confidence 567888888888888888888899999999999986 44556667999999999999966553 44 45679
Q ss_pred ccCCCcEEEeCCccCccccchh-hhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccc
Q 002115 619 NLLHLKYLNLAHQREIEKLPET-LCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRI 697 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 697 (965)
++++|++|+|++|. +..+|.. |+++++|++|++++|......|..+..+++|++|++++|. +..+| ++.+++|+.
T Consensus 121 ~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~ 196 (597)
T 3oja_B 121 NVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFH 196 (597)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSE
T ss_pred CCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhh
Confidence 99999999999999 8888875 5899999999999998444445568999999999999994 44443 567888888
Q ss_pred cCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhh
Q 002115 698 VKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDE 777 (965)
Q Consensus 698 L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~ 777 (965)
|++..+.... +.....|+.+.+....... ......++|+.|+|++|.+++.
T Consensus 197 L~l~~n~l~~--------l~~~~~L~~L~ls~n~l~~-------~~~~~~~~L~~L~L~~n~l~~~-------------- 247 (597)
T 3oja_B 197 ANVSYNLLST--------LAIPIAVEELDASHNSINV-------VRGPVNVELTILKLQHNNLTDT-------------- 247 (597)
T ss_dssp EECCSSCCSE--------EECCTTCSEEECCSSCCCE-------EECSCCSCCCEEECCSSCCCCC--------------
T ss_pred hhcccCcccc--------ccCCchhheeeccCCcccc-------cccccCCCCCEEECCCCCCCCC--------------
Confidence 8877654432 3333344444443321110 0011236899999999976542
Q ss_pred hHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCCCCceEeCcc
Q 002115 778 DERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGVQSVKRVGNE 857 (965)
Q Consensus 778 ~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~~l~~~~~~ 857 (965)
..+..+++|+.|+|++|.+.. .++..+..+++|+.|+|++|.+....+.++.+|+|+.|+|++|. +..++..
T Consensus 248 -----~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~ 319 (597)
T 3oja_B 248 -----AWLLNYPGLVEVDLSYNELEK--IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN 319 (597)
T ss_dssp -----GGGGGCTTCSEEECCSSCCCE--EESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGG
T ss_pred -----hhhccCCCCCEEECCCCccCC--CCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcc
Confidence 345678899999999999877 43378899999999999999877644447789999999999976 3222222
Q ss_pred ccCCCCCCCCccccCCcccccccccccccccccCcccccccccccCcccceEeeccCcc
Q 002115 858 FLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPK 916 (965)
Q Consensus 858 ~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~ 916 (965)
+..+++|+.|++++|. +.... +..+++|+.|+|++|+.
T Consensus 320 ------------~~~l~~L~~L~L~~N~-l~~~~--------~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 320 ------------QPQFDRLENLYLDHNS-IVTLK--------LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp ------------HHHHTTCSEEECCSSC-CCCCC--------CCTTCCCSEEECCSSCE
T ss_pred ------------cccCCCCCEEECCCCC-CCCcC--------hhhcCCCCEEEeeCCCC
Confidence 2368999999998875 44332 44789999999999985
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=2.4e-22 Score=219.17 Aligned_cols=232 Identities=24% Similarity=0.310 Sum_probs=155.7
Q ss_pred cCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCC
Q 002115 589 KLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKL 668 (965)
Q Consensus 589 ~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L 668 (965)
....++.|+|+ ++.+..+|..++++++|++|+|++|. +..+|..++++++|++|++++|. +..+|..+.++
T Consensus 79 ~~~~l~~L~L~-------~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l 149 (328)
T 4fcg_A 79 TQPGRVALELR-------SVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASL 149 (328)
T ss_dssp TSTTCCEEEEE-------SSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGC
T ss_pred cccceeEEEcc-------CCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcC
Confidence 35678888888 44455677778888888888888888 66888888888888888888887 66788888888
Q ss_pred CCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCC
Q 002115 669 RKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKK 748 (965)
Q Consensus 669 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~ 748 (965)
++|++|++++|.....+|..++... .. ..+..++
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~---------------------------------------~~-------~~~~~l~ 183 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTD---------------------------------------AS-------GEHQGLV 183 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC----------------------------------------C-------CCEEEST
T ss_pred cCCCEEECCCCCCccccChhHhhcc---------------------------------------ch-------hhhccCC
Confidence 8888888887766666665443200 00 1233455
Q ss_pred CCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCC
Q 002115 749 NLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNC 828 (965)
Q Consensus 749 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~ 828 (965)
+|+.|++++|.++. ++..+..+++|+.|+|++|.+.. +| ..+..+++|+.|+|++|.+.
T Consensus 184 ~L~~L~L~~n~l~~------------------lp~~l~~l~~L~~L~L~~N~l~~--l~-~~l~~l~~L~~L~Ls~n~~~ 242 (328)
T 4fcg_A 184 NLQSLRLEWTGIRS------------------LPASIANLQNLKSLKIRNSPLSA--LG-PAIHHLPKLEELDLRGCTAL 242 (328)
T ss_dssp TCCEEEEEEECCCC------------------CCGGGGGCTTCCEEEEESSCCCC--CC-GGGGGCTTCCEEECTTCTTC
T ss_pred CCCEEECcCCCcCc------------------chHhhcCCCCCCEEEccCCCCCc--Cc-hhhccCCCCCEEECcCCcch
Confidence 67777777775431 12334455666666666666665 55 35666666666666666666
Q ss_pred CCCCC-CCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccccccccccccccccCcccccccccccCcccc
Q 002115 829 EHLPP-LGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLS 907 (965)
Q Consensus 829 ~~lp~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~ 907 (965)
+.+|. ++++++|++|+|++|... +.+|..+..+++|+
T Consensus 243 ~~~p~~~~~l~~L~~L~L~~n~~~------------------------------------------~~~p~~~~~l~~L~ 280 (328)
T 4fcg_A 243 RNYPPIFGGRAPLKRLILKDCSNL------------------------------------------LTLPLDIHRLTQLE 280 (328)
T ss_dssp CBCCCCTTCCCCCCEEECTTCTTC------------------------------------------CBCCTTGGGCTTCC
T ss_pred hhhHHHhcCCCCCCEEECCCCCch------------------------------------------hhcchhhhcCCCCC
Confidence 55554 555666666666554321 12334455678888
Q ss_pred eEeeccCccCcCCCcCCCCCCCCCeEeEcCC
Q 002115 908 SLSIRRCPKLKALPDRLLQKTTLQALTIGEC 938 (965)
Q Consensus 908 ~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c 938 (965)
.|+|++|+.+..+|..+.++++|+.+++..+
T Consensus 281 ~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred EEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 8888888888888888888888888887754
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=2.4e-21 Score=220.88 Aligned_cols=306 Identities=17% Similarity=0.160 Sum_probs=157.5
Q ss_pred hcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhh
Q 002115 562 HVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETL 641 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i 641 (965)
.+++|++|.+.++.. .. +| .|..+++|++|+|++|.++ .+| ++.+++|++|++++|. +..+| +
T Consensus 40 ~l~~L~~L~Ls~n~l---~~-~~-~l~~l~~L~~L~Ls~n~l~-------~~~--~~~l~~L~~L~Ls~N~-l~~~~--~ 102 (457)
T 3bz5_A 40 QLATLTSLDCHNSSI---TD-MT-GIEKLTGLTKLICTSNNIT-------TLD--LSQNTNLTYLACDSNK-LTNLD--V 102 (457)
T ss_dssp HHTTCCEEECCSSCC---CC-CT-TGGGCTTCSEEECCSSCCS-------CCC--CTTCTTCSEEECCSSC-CSCCC--C
T ss_pred HcCCCCEEEccCCCc---cc-Ch-hhcccCCCCEEEccCCcCC-------eEc--cccCCCCCEEECcCCC-Cceee--c
Confidence 556666666666542 22 23 3566666666666644432 232 5566666666666666 55554 5
Q ss_pred hccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCc
Q 002115 642 CELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNL 721 (965)
Q Consensus 642 ~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 721 (965)
+++++|++|++++|. +..+| +..+++|++|++++|. +..+| ++.+++|+.|++..+.... ... +..++.
T Consensus 103 ~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~--~~~---~~~l~~ 171 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKIT--KLD---VTPQTQ 171 (457)
T ss_dssp TTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCC--CCC---CTTCTT
T ss_pred CCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccc--ccc---cccCCc
Confidence 666666666666665 55554 5666666666666663 33332 5566666666665553222 111 223333
Q ss_pred CCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecC
Q 002115 722 LRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRG 801 (965)
Q Consensus 722 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 801 (965)
|+.+.+..... .. ..+..+++|+.|++++|.+++. .+..+++|+.|++++|.+
T Consensus 172 L~~L~ls~n~l-~~------l~l~~l~~L~~L~l~~N~l~~~--------------------~l~~l~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 172 LTTLDCSFNKI-TE------LDVSQNKLLNRLNCDTNNITKL--------------------DLNQNIQLTFLDCSSNKL 224 (457)
T ss_dssp CCEEECCSSCC-CC------CCCTTCTTCCEEECCSSCCSCC--------------------CCTTCTTCSEEECCSSCC
T ss_pred CCEEECCCCcc-ce------eccccCCCCCEEECcCCcCCee--------------------ccccCCCCCEEECcCCcc
Confidence 33333322111 10 0144556677777766654321 244556677777777766
Q ss_pred CCCCCChhhHhhccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCCCCceEeC---ccccCCCCCCCCccccCCccccc
Q 002115 802 RRNVVPKIWITSLTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGVQSVKRVG---NEFLGVESDTDGSSVIAFPKLKQ 878 (965)
Q Consensus 802 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~~l~~~~---~~~~~~~~~~~~~~~~~f~~L~~ 878 (965)
.. +| +..+++|+.|+|++|.+... | ++.+++|+.|+++++. ++.+. +.+.+.. ....+++|+.
T Consensus 225 ~~--ip---~~~l~~L~~L~l~~N~l~~~-~-~~~l~~L~~L~l~~n~-L~~L~l~~n~~~~~~------~~~~l~~L~~ 290 (457)
T 3bz5_A 225 TE--ID---VTPLTQLTYFDCSVNPLTEL-D-VSTLSKLTTLHCIQTD-LLEIDLTHNTQLIYF------QAEGCRKIKE 290 (457)
T ss_dssp SC--CC---CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECTTCC-CSCCCCTTCTTCCEE------ECTTCTTCCC
T ss_pred cc--cC---ccccCCCCEEEeeCCcCCCc-C-HHHCCCCCEEeccCCC-CCEEECCCCccCCcc------cccccccCCE
Confidence 65 44 44666777777777755542 2 3445555544443321 11111 0011100 0124567777
Q ss_pred ccccccccccccCcccc--cccccccCcccceEeeccCccCcCCCcCCCCCCCCCeEeEcCCc
Q 002115 879 LRFDEMDVLEEWDFGTA--INGEIMIMPRLSSLSIRRCPKLKALPDRLLQKTTLQALTIGECP 939 (965)
Q Consensus 879 L~l~~~~~L~~~~~~~~--~~~~~~~~~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 939 (965)
|++++|+.+..+..... ..-.+..+++|+.|++++|. ++.+| +..+++|+.|++++|.
T Consensus 291 L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 291 LDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred EECCCCcccceeccCCCcceEechhhcccCCEEECCCCc-ccccc--cccCCcCcEEECCCCC
Confidence 77766654443321100 00123455677777777665 44453 5667777777776654
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.3e-22 Score=234.68 Aligned_cols=297 Identities=18% Similarity=0.162 Sum_probs=224.5
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHh-hhh
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRT-NIE 618 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~-~i~ 618 (965)
..++.|.+..+.+..++...+..+++|+.|.+.++. +....|..|.++++|++|+|++|. +..+|. .+.
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~ 101 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI---VSAVEPGAFNNLFNLRTLGLRSNR-------LKLIPLGVFT 101 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSC-------CCSCCTTSST
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCc---cCEeChhhhhCCccCCEEECCCCc-------CCccCccccc
Confidence 578999999999887776777799999999999986 445567789999999999999554 455654 478
Q ss_pred ccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCccccccc-ccCCCcccccc
Q 002115 619 NLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLP-VGIGELIRLRI 697 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~ 697 (965)
++++|++|+|++|.+....|..+.++++|++|++++|......|..+..+++|++|++++|. +..+| ..+.++++|+.
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIV 180 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCE
T ss_pred CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcE
Confidence 99999999999999444456789999999999999998444456679999999999999994 44555 45889999999
Q ss_pred cCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhh
Q 002115 698 VKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDE 777 (965)
Q Consensus 698 L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~ 777 (965)
|++..+.........+..++ +|+.+.+......... ........+|+.|++++|.++...
T Consensus 181 L~l~~n~i~~~~~~~~~~l~---~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~------------- 240 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLY---RLKVLEISHWPYLDTM----TPNCLYGLNLTSLSITHCNLTAVP------------- 240 (477)
T ss_dssp EEEESCCCCEECTTCSCSCT---TCCEEEEECCTTCCEE----CTTTTTTCCCSEEEEESSCCCSCC-------------
T ss_pred EeCCCCcCcEeChhhcccCc---ccceeeCCCCcccccc----CcccccCccccEEECcCCcccccC-------------
Confidence 99988877654444444444 4444444432221110 012233458999999999765422
Q ss_pred hHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCCCCceEeCc
Q 002115 778 DERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGVQSVKRVGN 856 (965)
Q Consensus 778 ~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~~~l~~~~~ 856 (965)
...+..+++|+.|+|++|.+.. +++..+..+++|+.|+|++|.+....|. ++++++|+.|+|++|. ++.++.
T Consensus 241 ----~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 313 (477)
T 2id5_A 241 ----YLAVRHLVYLRFLNLSYNPIST--IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEE 313 (477)
T ss_dssp ----HHHHTTCTTCCEEECCSSCCCE--ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCG
T ss_pred ----HHHhcCccccCeeECCCCcCCc--cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCH
Confidence 1245678899999999999877 5546788999999999999988776565 8999999999999864 333333
Q ss_pred cccCCCCCCCCccccCCcccccccccccc
Q 002115 857 EFLGVESDTDGSSVIAFPKLKQLRFDEMD 885 (965)
Q Consensus 857 ~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 885 (965)
.. +..+++|+.|++++++
T Consensus 314 ~~-----------~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 314 SV-----------FHSVGNLETLILDSNP 331 (477)
T ss_dssp GG-----------BSCGGGCCEEECCSSC
T ss_pred hH-----------cCCCcccCEEEccCCC
Confidence 22 2367899999998876
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=1.5e-21 Score=222.65 Aligned_cols=280 Identities=18% Similarity=0.172 Sum_probs=206.5
Q ss_pred HhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccc
Q 002115 586 LFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGI 665 (965)
Q Consensus 586 ~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i 665 (965)
.+.++++|++|++++|.+ ..+| .++.+++|++|+|++|. ++.+| ++++++|++|++++|. +..+| +
T Consensus 37 ~~~~l~~L~~L~Ls~n~l-------~~~~-~l~~l~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~ 102 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSI-------TDMT-GIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNK-LTNLD--V 102 (457)
T ss_dssp EHHHHTTCCEEECCSSCC-------CCCT-TGGGCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSC-CSCCC--C
T ss_pred ChhHcCCCCEEEccCCCc-------ccCh-hhcccCCCCEEEccCCc-CCeEc--cccCCCCCEEECcCCC-Cceee--c
Confidence 478899999999996554 4455 68999999999999999 88887 8999999999999998 77775 8
Q ss_pred cCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhcc
Q 002115 666 GKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELE 745 (965)
Q Consensus 666 ~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~ 745 (965)
+.+++|++|++++| .+..+| ++.+++|+.|++..+..... . +..++.|+.+.+.....+.. ..+.
T Consensus 103 ~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~l~~l---~---l~~l~~L~~L~l~~n~~~~~------~~~~ 167 (457)
T 3bz5_A 103 TPLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNTLTEI---D---VSHNTQLTELDCHLNKKITK------LDVT 167 (457)
T ss_dssp TTCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSCCSCC---C---CTTCTTCCEEECTTCSCCCC------CCCT
T ss_pred CCCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCcccee---c---cccCCcCCEEECCCCCcccc------cccc
Confidence 89999999999999 455565 89999999999988876652 2 34445555444443322221 1366
Q ss_pred CCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecC
Q 002115 746 KKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFEC 825 (965)
Q Consensus 746 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~ 825 (965)
.+++|+.|++++|.+++. .+..+++|+.|++++|.+.. ++ +..+++|+.|+|++|
T Consensus 168 ~l~~L~~L~ls~n~l~~l--------------------~l~~l~~L~~L~l~~N~l~~--~~---l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITEL--------------------DVSQNKLLNRLNCDTNNITK--LD---LNQNIQLTFLDCSSN 222 (457)
T ss_dssp TCTTCCEEECCSSCCCCC--------------------CCTTCTTCCEEECCSSCCSC--CC---CTTCTTCSEEECCSS
T ss_pred cCCcCCEEECCCCcccee--------------------ccccCCCCCEEECcCCcCCe--ec---cccCCCCCEEECcCC
Confidence 789999999999976431 15678899999999999887 44 678999999999999
Q ss_pred CCCCCCCCCCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccccccccccccccccCcc-----ccccccc
Q 002115 826 RNCEHLPPLGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFG-----TAINGEI 900 (965)
Q Consensus 826 ~~~~~lp~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~-----~~~~~~~ 900 (965)
.+.. +| ++.+++|++|++++|. ++ +.. ...|++|+.|.++++ +|+...+. +.+| .
T Consensus 223 ~l~~-ip-~~~l~~L~~L~l~~N~-l~-------~~~-------~~~l~~L~~L~l~~n-~L~~L~l~~n~~~~~~~--~ 282 (457)
T 3bz5_A 223 KLTE-ID-VTPLTQLTYFDCSVNP-LT-------ELD-------VSTLSKLTTLHCIQT-DLLEIDLTHNTQLIYFQ--A 282 (457)
T ss_dssp CCSC-CC-CTTCTTCSEEECCSSC-CS-------CCC-------CTTCTTCCEEECTTC-CCSCCCCTTCTTCCEEE--C
T ss_pred cccc-cC-ccccCCCCEEEeeCCc-CC-------CcC-------HHHCCCCCEEeccCC-CCCEEECCCCccCCccc--c
Confidence 8876 66 8999999999999865 22 111 135666666655443 24333322 2222 3
Q ss_pred ccCcccceEeeccCccCcCCCcC--------CCCCCCCCeEeEcCCc
Q 002115 901 MIMPRLSSLSIRRCPKLKALPDR--------LLQKTTLQALTIGECP 939 (965)
Q Consensus 901 ~~~~~L~~L~L~~c~~l~~lp~~--------l~~l~~L~~L~l~~c~ 939 (965)
..+++|+.|+|++|+.+..+|.. +..+++|++|++++|.
T Consensus 283 ~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 283 EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC
T ss_pred cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc
Confidence 47899999999999987777642 3344555666555553
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=3.6e-22 Score=216.48 Aligned_cols=247 Identities=19% Similarity=0.175 Sum_probs=118.9
Q ss_pred eEEEEEEEeCCCcc---chhhHhhhcCceeEEEecc-cccccccccchHHhhcCCccceEEcCcccccccccchhhHHhh
Q 002115 541 KVLHLMLNLDGRHL---VSISIWDHVKRLRSLLVES-YEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTN 616 (965)
Q Consensus 541 ~~r~L~l~~~~~~~---~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~ 616 (965)
+++++.+.++.+.. ++.. +..+++|++|.+.+ +. +...+|..|.++++|++|+|++|.++ ..+|..
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~------~~~p~~ 120 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINN---LVGPIPPAIAKLTQLHYLYITHTNVS------GAIPDF 120 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETT---EESCCCGGGGGCTTCSEEEEEEECCE------EECCGG
T ss_pred eEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCc---ccccCChhHhcCCCCCEEECcCCeeC------CcCCHH
Confidence 45555555555442 2222 22455555555543 32 22223444555555555555533322 234444
Q ss_pred hhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCC-CccEeecCCCcccccccccCCCcccc
Q 002115 617 IENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLR-KLMYLENDGTYSLRYLPVGIGELIRL 695 (965)
Q Consensus 617 i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~-~L~~L~l~~~~~~~~~p~~i~~l~~L 695 (965)
++++++|++|+|++|.+...+|..+.++++|++|++++|.....+|..+..++ +|++|++++|.....+|..++.++ |
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence 55555555555555552224555555555555555555542224555555554 555555555533334444444443 4
Q ss_pred cccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCCh
Q 002115 696 RIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEE 775 (965)
Q Consensus 696 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~ 775 (965)
+.|++..+.... ..+ ..+..+++|+.|++++|.+++.
T Consensus 200 ~~L~Ls~N~l~~------------------------~~~-------~~~~~l~~L~~L~L~~N~l~~~------------ 236 (313)
T 1ogq_A 200 AFVDLSRNMLEG------------------------DAS-------VLFGSDKNTQKIHLAKNSLAFD------------ 236 (313)
T ss_dssp SEEECCSSEEEE------------------------CCG-------GGCCTTSCCSEEECCSSEECCB------------
T ss_pred cEEECcCCcccC------------------------cCC-------HHHhcCCCCCEEECCCCceeee------------
Confidence 444333222111 001 2334455666666666644321
Q ss_pred hhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCCC
Q 002115 776 DEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGVQ 849 (965)
Q Consensus 776 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~ 849 (965)
+..+..+++|+.|+|++|.+... +| .++..+++|+.|+|++|.+.+.+|..+++++|+.|++.+++
T Consensus 237 ------~~~~~~l~~L~~L~Ls~N~l~~~-~p-~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 237 ------LGKVGLSKNLNGLDLRNNRIYGT-LP-QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp ------GGGCCCCTTCCEEECCSSCCEEC-CC-GGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred ------cCcccccCCCCEEECcCCcccCc-CC-hHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 11234455666666666665521 44 45566666666666666655555555556666666665543
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=3.5e-22 Score=216.59 Aligned_cols=130 Identities=23% Similarity=0.326 Sum_probs=89.1
Q ss_pred CceeEEEecccccccccccchHHhhcCCccceEEcCc-ccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhh
Q 002115 564 KRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGV-HSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLC 642 (965)
Q Consensus 564 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~-n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~ 642 (965)
.+++.|.+.++...... .+|..|.++++|++|+|++ |.+. ..+|..++++++|++|+|++|.+...+|..+.
T Consensus 50 ~~l~~L~L~~~~l~~~~-~~~~~l~~l~~L~~L~L~~~n~l~------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPY-PIPSSLANLPYLNFLYIGGINNLV------GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSSCE-ECCGGGGGCTTCSEEEEEEETTEE------SCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred ceEEEEECCCCCccCCc-ccChhHhCCCCCCeeeCCCCCccc------ccCChhHhcCCCCCEEECcCCeeCCcCCHHHh
Confidence 56788888777632110 3566688888888888873 4443 35677788888888888888883347777788
Q ss_pred ccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcc-cccccCc
Q 002115 643 ELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELI-RLRIVKE 700 (965)
Q Consensus 643 ~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~-~L~~L~l 700 (965)
++++|++|++++|.....+|..+..+++|++|++++|.....+|..++.++ +|+.|++
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L 181 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEEC
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEEC
Confidence 888888888888874446777788888888888887754445665555554 4444443
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=2e-20 Score=225.17 Aligned_cols=145 Identities=16% Similarity=0.180 Sum_probs=116.6
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHH-hhhh
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVR-TNIE 618 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp-~~i~ 618 (965)
..+++|.+..|.+..++...|.++++|++|.+.++. +..+.+.+|.++++|++|+|++|. +..+| ..|.
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~---i~~i~~~~f~~L~~L~~L~Ls~N~-------l~~l~~~~f~ 121 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNP-------IQSLALGAFS 121 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCC-------CCEECGGGGT
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc---CCCcChhHhcCCCCCCEEEccCCc-------CCCCCHHHhc
Confidence 578999999999988887777799999999999986 455556779999999999999554 45555 4588
Q ss_pred ccCCCcEEEeCCccCccccch-hhhccCCCcEEeccCccccc--ccCccccCCCCccEeecCCCcccccccccCCCcccc
Q 002115 619 NLLHLKYLNLAHQREIEKLPE-TLCELYNLEHLDISYCRNLR--ELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRL 695 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~LdL~~~~~l~--~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 695 (965)
++.+|++|+|++|. +..+|. .|++|++|++|++++|. +. .+|..+..+++|++|++++|......|..+..+.++
T Consensus 122 ~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 122 GLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp TCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred CCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence 99999999999999 777775 58999999999999998 54 457788999999999999985544445555554444
Q ss_pred c
Q 002115 696 R 696 (965)
Q Consensus 696 ~ 696 (965)
+
T Consensus 200 ~ 200 (635)
T 4g8a_A 200 P 200 (635)
T ss_dssp T
T ss_pred h
Confidence 3
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=6.4e-21 Score=209.03 Aligned_cols=198 Identities=23% Similarity=0.264 Sum_probs=100.4
Q ss_pred hhhccCCCcEEEeCCccCcccc-chhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccc-cCCCcc
Q 002115 616 NIENLLHLKYLNLAHQREIEKL-PETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPV-GIGELI 693 (965)
Q Consensus 616 ~i~~L~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~ 693 (965)
.++++++|++|+|++|. +..+ |..++++++|++|++++|. +..+|..+. ++|++|++++|. +..+|. .+++++
T Consensus 73 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~ 147 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLR 147 (332)
T ss_dssp TTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCS
T ss_pred HhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCc
Confidence 45555555555555555 3333 4445555555555555554 445554443 455555555552 223332 245555
Q ss_pred cccccCceEecCcc--CCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCC
Q 002115 694 RLRIVKEFVVGGGY--DRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRR 771 (965)
Q Consensus 694 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~ 771 (965)
+|+.|++..+.... .....+..+ +|+.|...++. +..++. . ..++|+.|++++|.+++..
T Consensus 148 ~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~-------~--~~~~L~~L~l~~n~i~~~~------- 209 (332)
T 2ft3_A 148 NMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPK-------D--LPETLNELHLDHNKIQAIE------- 209 (332)
T ss_dssp SCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCS-------S--SCSSCSCCBCCSSCCCCCC-------
T ss_pred cCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCc-------c--ccCCCCEEECCCCcCCccC-------
Confidence 55555554443321 111111111 22222111111 111111 0 1146777777777554322
Q ss_pred CCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCCC
Q 002115 772 DNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGVQ 849 (965)
Q Consensus 772 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~~ 849 (965)
+..+..+++|+.|++++|.+.. .++.++..+++|+.|+|++|.+. .+|. ++.+++|++|++++|.
T Consensus 210 ----------~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 210 ----------LEDLLRYSKLYRLGLGHNQIRM--IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp ----------TTSSTTCTTCSCCBCCSSCCCC--CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC
T ss_pred ----------HHHhcCCCCCCEEECCCCcCCc--CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC
Confidence 1345566777777777777666 44356777777777777777665 4444 6777777777777654
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=8.8e-21 Score=207.91 Aligned_cols=290 Identities=16% Similarity=0.132 Sum_probs=190.4
Q ss_pred ccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccc-hhhhccCCCcEEeccCccccccc-CccccCCC
Q 002115 592 CLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLP-ETLCELYNLEHLDISYCRNLREL-PQGIGKLR 669 (965)
Q Consensus 592 ~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~LdL~~~~~l~~l-P~~i~~L~ 669 (965)
+|++++++ ++.+..+|..+. ++|++|+|++|. +..+| ..+.++++|++|++++|. +..+ |..+.+++
T Consensus 34 ~l~~l~~~-------~~~l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 102 (332)
T 2ft3_A 34 HLRVVQCS-------DLGLKAVPKEIS--PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLR 102 (332)
T ss_dssp ETTEEECC-------SSCCSSCCSCCC--TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCT
T ss_pred cCCEEECC-------CCCccccCCCCC--CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcC
Confidence 68999998 555567776654 689999999999 77664 589999999999999998 5554 77899999
Q ss_pred CccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeecc--CCCCCHhHHHHhhccCC
Q 002115 670 KLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGL--GDVSDAGEARRAELEKK 747 (965)
Q Consensus 670 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~--~~~~~~~~~~~~~l~~~ 747 (965)
+|++|++++| .+..+|..+. ++|++|++..+.........+..+++|+.|...++... +..+ ..+..+
T Consensus 103 ~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~~~l 172 (332)
T 2ft3_A 103 KLQKLYISKN-HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP-------GAFDGL 172 (332)
T ss_dssp TCCEEECCSS-CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT-------TSSCSC
T ss_pred CCCEEECCCC-cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCc-------ccccCC
Confidence 9999999999 5668888776 78999998877766533333444444443332222110 0111 234444
Q ss_pred CCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCC
Q 002115 748 KNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRN 827 (965)
Q Consensus 748 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~ 827 (965)
+|+.|++++|.++... ..+ +++|+.|++++|.+.. .++..+..+++|+.|+|++|.+
T Consensus 173 -~L~~L~l~~n~l~~l~------------------~~~--~~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~L~~N~l 229 (332)
T 2ft3_A 173 -KLNYLRISEAKLTGIP------------------KDL--PETLNELHLDHNKIQA--IELEDLLRYSKLYRLGLGHNQI 229 (332)
T ss_dssp -CCSCCBCCSSBCSSCC------------------SSS--CSSCSCCBCCSSCCCC--CCTTSSTTCTTCSCCBCCSSCC
T ss_pred -ccCEEECcCCCCCccC------------------ccc--cCCCCEEECCCCcCCc--cCHHHhcCCCCCCEEECCCCcC
Confidence 7888888877654321 111 2578888888887766 4435677788888888888877
Q ss_pred CCCCCC-CCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccccccccccccccccCcccccccc-cccCcc
Q 002115 828 CEHLPP-LGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGE-IMIMPR 905 (965)
Q Consensus 828 ~~~lp~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~-~~~~~~ 905 (965)
....+. ++.+++|+.|+|++|. ++.++.. ...+++|+.|++++++ ++........+.. ...+++
T Consensus 230 ~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~------------l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 230 RMIENGSLSFLPTLRELHLDNNK-LSRVPAG------------LPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSC-CCBCCTT------------GGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCC
T ss_pred CcCChhHhhCCCCCCEEECCCCc-CeecChh------------hhcCccCCEEECCCCC-CCccChhHcccccccccccc
Confidence 665553 7788888888888764 3333322 2357788888877764 4433211100000 012567
Q ss_pred cceEeeccCccC--cCCCcCCCCCCCCCeEeEcCCc
Q 002115 906 LSSLSIRRCPKL--KALPDRLLQKTTLQALTIGECP 939 (965)
Q Consensus 906 L~~L~L~~c~~l--~~lp~~l~~l~~L~~L~l~~c~ 939 (965)
|+.|++.+|+.. ...|..+..+++|+.|++++|.
T Consensus 296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 888888888754 3445667778888888887774
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=3.4e-20 Score=203.15 Aligned_cols=292 Identities=18% Similarity=0.199 Sum_probs=147.7
Q ss_pred ceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHH-hhhhccCCCcEEEeCCccCcccc-chhhh
Q 002115 565 RLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVR-TNIENLLHLKYLNLAHQREIEKL-PETLC 642 (965)
Q Consensus 565 ~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp-~~i~~L~~Lr~L~L~~~~~i~~l-p~~i~ 642 (965)
+++.+.+.++... . +|..+ .+.|++|+|++|.+ ..++ ..++++++|++|+|++|. +..+ |..++
T Consensus 32 ~l~~l~~~~~~l~---~-lp~~~--~~~l~~L~L~~n~i-------~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 97 (330)
T 1xku_A 32 HLRVVQCSDLGLE---K-VPKDL--PPDTALLDLQNNKI-------TEIKDGDFKNLKNLHTLILINNK-ISKISPGAFA 97 (330)
T ss_dssp ETTEEECTTSCCC---S-CCCSC--CTTCCEEECCSSCC-------CCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTT
T ss_pred CCeEEEecCCCcc---c-cCccC--CCCCeEEECCCCcC-------CEeChhhhccCCCCCEEECCCCc-CCeeCHHHhc
Confidence 4566666655422 2 23222 25677777774443 3333 356777777777777777 4444 66777
Q ss_pred ccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcC
Q 002115 643 ELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLL 722 (965)
Q Consensus 643 ~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 722 (965)
++++|++|++++|. +..+|..+. ++|++|++++|......+..++++++|+.|++..+..... +...
T Consensus 98 ~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~--------- 164 (330)
T 1xku_A 98 PLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-GIEN--------- 164 (330)
T ss_dssp TCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG-GBCT---------
T ss_pred CCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc-CcCh---------
Confidence 77777777777776 667776654 6777777777743333333466777777776655443210 0000
Q ss_pred CcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCC
Q 002115 723 RYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGR 802 (965)
Q Consensus 723 ~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 802 (965)
..+..+++|+.|++++|.++... ..+ .++|+.|++++|.+.
T Consensus 165 -------------------~~~~~l~~L~~L~l~~n~l~~l~------------------~~~--~~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 165 -------------------GAFQGMKKLSYIRIADTNITTIP------------------QGL--PPSLTELHLDGNKIT 205 (330)
T ss_dssp -------------------TGGGGCTTCCEEECCSSCCCSCC------------------SSC--CTTCSEEECTTSCCC
T ss_pred -------------------hhccCCCCcCEEECCCCccccCC------------------ccc--cccCCEEECCCCcCC
Confidence 12333444555555544332211 011 144555555555544
Q ss_pred CCCCChhhHhhccCCcEEEEecCCCCCCCC-CCCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccccccc
Q 002115 803 RNVVPKIWITSLTNLRVLSLFECRNCEHLP-PLGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRF 881 (965)
Q Consensus 803 ~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp-~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l 881 (965)
. .++.++..+++|+.|+|++|.+....+ .++.+++|++|+|++|. +..++.. ...+++|+.|++
T Consensus 206 ~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~------------l~~l~~L~~L~l 270 (330)
T 1xku_A 206 K--VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGG------------LADHKYIQVVYL 270 (330)
T ss_dssp E--ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTT------------TTTCSSCCEEEC
T ss_pred c--cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChh------------hccCCCcCEEEC
Confidence 3 222444555555555555554443333 24555555555555543 2111111 123455555555
Q ss_pred cccccccccCcccccc-cccccCcccceEeeccCccCc--CCCcCCCCCCCCCeEeEcCC
Q 002115 882 DEMDVLEEWDFGTAIN-GEIMIMPRLSSLSIRRCPKLK--ALPDRLLQKTTLQALTIGEC 938 (965)
Q Consensus 882 ~~~~~L~~~~~~~~~~-~~~~~~~~L~~L~L~~c~~l~--~lp~~l~~l~~L~~L~l~~c 938 (965)
++++ ++........+ ......+.|+.|++.+|+... ..|..+..+++|+.+++++|
T Consensus 271 ~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 271 HNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 4442 22221100000 001134677777777777432 33456666777777777766
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=9.7e-21 Score=207.44 Aligned_cols=265 Identities=17% Similarity=0.198 Sum_probs=197.5
Q ss_pred CccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccch-hhhccCCCcEEeccCccccccc-CccccCC
Q 002115 591 TCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPE-TLCELYNLEHLDISYCRNLREL-PQGIGKL 668 (965)
Q Consensus 591 ~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~LdL~~~~~l~~l-P~~i~~L 668 (965)
.+|++++++ ++.+..+|..+. ++|++|+|++|. ++.+|. .++++++|++|++++|. +..+ |..+..+
T Consensus 31 c~l~~l~~~-------~~~l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 99 (330)
T 1xku_A 31 CHLRVVQCS-------DLGLEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPL 99 (330)
T ss_dssp EETTEEECT-------TSCCCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTC
T ss_pred CCCeEEEec-------CCCccccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCC
Confidence 378999998 445566776554 689999999999 777765 79999999999999998 5554 8889999
Q ss_pred CCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCC
Q 002115 669 RKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKK 748 (965)
Q Consensus 669 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~ 748 (965)
++|++|++++| .+..+|..+. ++|+.|++..+.... ++ ...+..++
T Consensus 100 ~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l~~n~l~~-------------------------~~------~~~~~~l~ 145 (330)
T 1xku_A 100 VKLERLYLSKN-QLKELPEKMP--KTLQELRVHENEITK-------------------------VR------KSVFNGLN 145 (330)
T ss_dssp TTCCEEECCSS-CCSBCCSSCC--TTCCEEECCSSCCCB-------------------------BC------HHHHTTCT
T ss_pred CCCCEEECCCC-cCCccChhhc--ccccEEECCCCcccc-------------------------cC------HhHhcCCc
Confidence 99999999998 4567777664 577777665443221 11 13456778
Q ss_pred CCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCC
Q 002115 749 NLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNC 828 (965)
Q Consensus 749 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~ 828 (965)
+|+.|+++.|.+... ......+..+++|+.|++++|.+.. +| ..+ .++|+.|+|++|.+.
T Consensus 146 ~L~~L~l~~n~l~~~---------------~~~~~~~~~l~~L~~L~l~~n~l~~--l~-~~~--~~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 146 QMIVVELGTNPLKSS---------------GIENGAFQGMKKLSYIRIADTNITT--IP-QGL--PPSLTELHLDGNKIT 205 (330)
T ss_dssp TCCEEECCSSCCCGG---------------GBCTTGGGGCTTCCEEECCSSCCCS--CC-SSC--CTTCSEEECTTSCCC
T ss_pred cccEEECCCCcCCcc---------------CcChhhccCCCCcCEEECCCCcccc--CC-ccc--cccCCEEECCCCcCC
Confidence 999999998865321 1123455678899999999999887 77 332 389999999999877
Q ss_pred CCCCC-CCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccccccccccccccccCcccccccccccCcccc
Q 002115 829 EHLPP-LGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLS 907 (965)
Q Consensus 829 ~~lp~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~ 907 (965)
...|. ++.+++|++|+|++|. ++.++... +..+++|+.|+++++. +. .+|..+..+++|+
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~~l~~L~~L~L~~N~-l~------~lp~~l~~l~~L~ 266 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNS-ISAVDNGS-----------LANTPHLRELHLNNNK-LV------KVPGGLADHKYIQ 266 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSC-CCEECTTT-----------GGGSTTCCEEECCSSC-CS------SCCTTTTTCSSCC
T ss_pred ccCHHHhcCCCCCCEEECCCCc-CceeChhh-----------ccCCCCCCEEECCCCc-Cc------cCChhhccCCCcC
Confidence 66554 8999999999999876 33333211 2368999999998874 43 3456677899999
Q ss_pred eEeeccCccCcCCCcC-CC------CCCCCCeEeEcCCcc
Q 002115 908 SLSIRRCPKLKALPDR-LL------QKTTLQALTIGECPI 940 (965)
Q Consensus 908 ~L~L~~c~~l~~lp~~-l~------~l~~L~~L~l~~c~~ 940 (965)
.|+|++|+ ++.+|.. +. ..++|+.|++++||-
T Consensus 267 ~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 267 VVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp EEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred EEECCCCc-CCccChhhcCCcccccccccccceEeecCcc
Confidence 99999997 5666532 22 247899999999995
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.9e-20 Score=204.03 Aligned_cols=222 Identities=24% Similarity=0.327 Sum_probs=164.5
Q ss_pred hcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhh
Q 002115 562 HVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETL 641 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i 641 (965)
...+++.|.+.++.. .. +|..+.++++|++|+|++ +.+..+|..++++++|++|+|++|. +..+|..+
T Consensus 79 ~~~~l~~L~L~~n~l---~~-lp~~l~~l~~L~~L~L~~-------n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l 146 (328)
T 4fcg_A 79 TQPGRVALELRSVPL---PQ-FPDQAFRLSHLQHMTIDA-------AGLMELPDTMQQFAGLETLTLARNP-LRALPASI 146 (328)
T ss_dssp TSTTCCEEEEESSCC---SS-CCSCGGGGTTCSEEEEES-------SCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGG
T ss_pred cccceeEEEccCCCc---hh-cChhhhhCCCCCEEECCC-------CCccchhHHHhccCCCCEEECCCCc-cccCcHHH
Confidence 347788888888763 33 565677899999999994 4455778889999999999999998 77999999
Q ss_pred hccCCCcEEeccCcccccccCccccC---------CCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCC
Q 002115 642 CELYNLEHLDISYCRNLRELPQGIGK---------LRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACS 712 (965)
Q Consensus 642 ~~L~~L~~LdL~~~~~l~~lP~~i~~---------L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~ 712 (965)
+++++|++|++++|..+..+|..+.. +++|++|++++| .+..+|..++++++|+.|++..+....
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~----- 220 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSA----- 220 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCC-----
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCc-----
Confidence 99999999999998878888887764 888888888887 444777777777777777776544322
Q ss_pred ccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCc
Q 002115 713 LGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLK 792 (965)
Q Consensus 713 ~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 792 (965)
++ ..+..+++|+.|++++|.+.+. ++..+..+++|+
T Consensus 221 --------------------l~-------~~l~~l~~L~~L~Ls~n~~~~~-----------------~p~~~~~l~~L~ 256 (328)
T 4fcg_A 221 --------------------LG-------PAIHHLPKLEELDLRGCTALRN-----------------YPPIFGGRAPLK 256 (328)
T ss_dssp --------------------CC-------GGGGGCTTCCEEECTTCTTCCB-----------------CCCCTTCCCCCC
T ss_pred --------------------Cc-------hhhccCCCCCEEECcCCcchhh-----------------hHHHhcCCCCCC
Confidence 11 1244556777777777654332 234556677888
Q ss_pred eEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecC
Q 002115 793 ELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYG 847 (965)
Q Consensus 793 ~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~ 847 (965)
.|+|++|..... +| .++..+++|+.|+|++|.+.+.+|. +++|++|+.+.+..
T Consensus 257 ~L~L~~n~~~~~-~p-~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 257 RLILKDCSNLLT-LP-LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp EEECTTCTTCCB-CC-TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred EEECCCCCchhh-cc-hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 888887766553 45 5677888888888888877777776 77888888887754
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=2.5e-20 Score=212.28 Aligned_cols=150 Identities=18% Similarity=0.091 Sum_probs=59.4
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCcc-------------ceEEcCcccccc-
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCL-------------RALTLGVHSLRL- 605 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~L-------------r~L~L~~n~l~~- 605 (965)
..++.+.+.++.+..+|..+. ++++|+.|.+.++. +...+|..++.++.| +.|++++|.++.
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~-~L~~L~~L~l~~n~---~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAE-NVKSKTEYYNAWSE---WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp ------------------------CCHHHHHHHHHH---HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred ccchhhhcccCchhhCChhHh-cccchhhhhccCCc---ccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 466777777777765665544 77777777776654 222234434433332 444444333210
Q ss_pred ------------cccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCccE
Q 002115 606 ------------CENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMY 673 (965)
Q Consensus 606 ------------~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~ 673 (965)
.++.+..+|.. +.+|++|++++|. +..+|.. .++|++|++++|. +..+| .++.+++|++
T Consensus 87 p~~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~-l~~lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 87 PELPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQ-LEKLP-ELQNSSFLKI 157 (454)
T ss_dssp CSCCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSC-CSSCC-CCTTCTTCCE
T ss_pred CCCcCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCC-CCCCc-ccCCCCCCCE
Confidence 01122223321 2345555555554 4444321 1456666666665 45565 4666666666
Q ss_pred eecCCCcccccccccCCCcccccccCceEecCc
Q 002115 674 LENDGTYSLRYLPVGIGELIRLRIVKEFVVGGG 706 (965)
Q Consensus 674 L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~ 706 (965)
|++++| .+..+|..+ .+|+.|++..+...
T Consensus 158 L~l~~N-~l~~lp~~~---~~L~~L~L~~n~l~ 186 (454)
T 1jl5_A 158 IDVDNN-SLKKLPDLP---PSLEFIAAGNNQLE 186 (454)
T ss_dssp EECCSS-CCSCCCCCC---TTCCEEECCSSCCS
T ss_pred EECCCC-cCcccCCCc---ccccEEECcCCcCC
Confidence 666666 333455433 35555555554443
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=2.5e-22 Score=231.45 Aligned_cols=370 Identities=16% Similarity=0.080 Sum_probs=234.9
Q ss_pred ceEEEEEEEeCCCccch-hhHhhhcCceeEEEecccccccc-cccchHHhhcCCccceEEcCcccccccccchhhHHhhh
Q 002115 540 KKVLHLMLNLDGRHLVS-ISIWDHVKRLRSLLVESYEYSWS-SEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNI 617 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~-~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i 617 (965)
..++++.+..+.+.... ...+..+++|++|.+.++..... ...++..+..+++|++|+|++|.++ . ..+..+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~--~----~~~~~l 76 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG--D----VGVHCV 76 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH--H----HHHHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC--h----HHHHHH
Confidence 57889999888876533 33356899999999998874321 1135677889999999999976654 2 222333
Q ss_pred h-ccC----CCcEEEeCCccCcc-----ccchhhhccCCCcEEeccCcccccccCccc-----cCCCCccEeecCCCccc
Q 002115 618 E-NLL----HLKYLNLAHQREIE-----KLPETLCELYNLEHLDISYCRNLRELPQGI-----GKLRKLMYLENDGTYSL 682 (965)
Q Consensus 618 ~-~L~----~Lr~L~L~~~~~i~-----~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i-----~~L~~L~~L~l~~~~~~ 682 (965)
. .+. +|++|+|++|. ++ .+|..+.++++|++|++++|......+..+ ...++|++|++++|...
T Consensus 77 ~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp HHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence 3 344 69999999998 55 568889999999999999998322222222 23568999999999544
Q ss_pred c----cccccCCCcccccccCceEecCccCCCCCcc-ccc-cCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEE
Q 002115 683 R----YLPVGIGELIRLRIVKEFVVGGGYDRACSLG-SLK-KLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELH 756 (965)
Q Consensus 683 ~----~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~-~l~-~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 756 (965)
. .++..+..+++|+.|++..+.........+. .+. .++.|+.+.+............+...+..+++|++|+++
T Consensus 156 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 156 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235 (461)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEecc
Confidence 3 2455667789999999887765431111111 111 234555555555433333333455567788999999999
Q ss_pred eeccCCCCcccccCCCCChhhhHHhhh-cCCCCCCCceEEEeeecCCCCC---CChhhHhhccCCcEEEEecCCCCCCCC
Q 002115 757 FDHLRDGDEEQAGRRDNEEDEDERLLE-ALGPPPNLKELRIYQYRGRRNV---VPKIWITSLTNLRVLSLFECRNCEHLP 832 (965)
Q Consensus 757 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~L~~~~~~~~~---~p~~~~~~l~~L~~L~L~~~~~~~~lp 832 (965)
+|.+.+. ....+.. ...++++|+.|++++|.+.... ++ ..+..+++|++|+|++|.+....+
T Consensus 236 ~n~l~~~-------------~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 236 SNKLGDV-------------GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC-RVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp SSBCHHH-------------HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH-HHHHHCTTCCEEECTTCCCHHHHH
T ss_pred CCcCChH-------------HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH-HHHhhCCCcceEECCCCCCchHHH
Confidence 9854221 1112222 2345789999999998765411 23 456678999999999997643211
Q ss_pred ----C--CCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccccccccccccccccCcccccccccc-cCcc
Q 002115 833 ----P--LGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIM-IMPR 905 (965)
Q Consensus 833 ----~--l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~-~~~~ 905 (965)
. ....++|++|++++|. +...+..... ..+..+++|+.|+++++. +...... .+...+. .+++
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~-------~~l~~~~~L~~L~Ls~n~-i~~~~~~-~l~~~l~~~~~~ 371 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCS-FTAACCSHFS-------SVLAQNRFLLELQISNNR-LEDAGVR-ELCQGLGQPGSV 371 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH-------HHHHHCSSCCEEECCSSB-CHHHHHH-HHHHHHTSTTCC
T ss_pred HHHHHHhccCCccceeeEcCCCC-CchHHHHHHH-------HHHhhCCCccEEEccCCc-cccccHH-HHHHHHcCCCCc
Confidence 1 2234789999999875 2111000000 012246889999888763 3322110 0001111 2678
Q ss_pred cceEeeccCccCc----CCCcCCCCCCCCCeEeEcCCcc
Q 002115 906 LSSLSIRRCPKLK----ALPDRLLQKTTLQALTIGECPI 940 (965)
Q Consensus 906 L~~L~L~~c~~l~----~lp~~l~~l~~L~~L~l~~c~~ 940 (965)
|+.|+|++|.... .+|..+..+++|++|++++|+-
T Consensus 372 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred eEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 9999999986432 5677777788999999998863
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=1.5e-19 Score=217.52 Aligned_cols=153 Identities=19% Similarity=0.119 Sum_probs=120.5
Q ss_pred ccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHH-hhhhccCCCcEEEeCCc
Q 002115 553 HLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVR-TNIENLLHLKYLNLAHQ 631 (965)
Q Consensus 553 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp-~~i~~L~~Lr~L~L~~~ 631 (965)
..+|..+. +.++.|+++++. +..+.+..|.++++|++|+|++|. +..+| ..|.+|++|++|+|++|
T Consensus 44 ~~vP~~lp---~~~~~LdLs~N~---i~~l~~~~f~~l~~L~~L~Ls~N~-------i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 44 YKIPDNLP---FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCE-------IQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp SSCCSSSC---TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTCC-------CCEECTTTTTTCTTCCEEECTTC
T ss_pred CccCCCCC---cCCCEEEeeCCC---CCCCCHHHHhCCCCCCEEECCCCc-------CCCcChhHhcCCCCCCEEEccCC
Confidence 33554433 479999999987 555566779999999999999554 45554 46899999999999999
Q ss_pred cCccccch-hhhccCCCcEEeccCcccccccCcc-ccCCCCccEeecCCCcccc-cccccCCCcccccccCceEecCccC
Q 002115 632 REIEKLPE-TLCELYNLEHLDISYCRNLRELPQG-IGKLRKLMYLENDGTYSLR-YLPVGIGELIRLRIVKEFVVGGGYD 708 (965)
Q Consensus 632 ~~i~~lp~-~i~~L~~L~~LdL~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~~~~~ 708 (965)
+ ++.+|. .|.+|++|++|++++|. +..+|.. |+++++|++|++++|.... ..|..++.+++|+.|++..+.....
T Consensus 111 ~-l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 111 P-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp C-CCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred c-CCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 9 888885 68999999999999998 7777764 8999999999999995432 4678889999999999988876654
Q ss_pred CCCCccccccCC
Q 002115 709 RACSLGSLKKLN 720 (965)
Q Consensus 709 ~~~~~~~l~~L~ 720 (965)
....+..+.+++
T Consensus 189 ~~~~l~~L~~l~ 200 (635)
T 4g8a_A 189 YCTDLRVLHQMP 200 (635)
T ss_dssp CGGGGHHHHTCT
T ss_pred ccccccchhhhh
Confidence 344444444443
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=1.5e-19 Score=199.84 Aligned_cols=274 Identities=18% Similarity=0.219 Sum_probs=180.3
Q ss_pred hcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHh-hhhccCCCcEEEeCCccCcccc-ch
Q 002115 562 HVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRT-NIENLLHLKYLNLAHQREIEKL-PE 639 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~-~i~~L~~Lr~L~L~~~~~i~~l-p~ 639 (965)
.|+........++. +.. +|..+ .++|++|+|++|.+ ..+|. .+.++++|++|+|++|. ++.+ |.
T Consensus 29 ~C~~~~~c~~~~~~---l~~-iP~~~--~~~L~~L~l~~n~i-------~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 94 (353)
T 2z80_A 29 SCDRNGICKGSSGS---LNS-IPSGL--TEAVKSLDLSNNRI-------TYISNSDLQRCVNLQALVLTSNG-INTIEED 94 (353)
T ss_dssp EECTTSEEECCSTT---CSS-CCTTC--CTTCCEEECTTSCC-------CEECTTTTTTCTTCCEEECTTSC-CCEECTT
T ss_pred CCCCCeEeeCCCCC---ccc-ccccc--cccCcEEECCCCcC-------cccCHHHhccCCCCCEEECCCCc-cCccCHh
Confidence 44444455555544 333 34333 25889999985544 44544 68889999999999998 6655 45
Q ss_pred hhhccCCCcEEeccCcccccccCcc-ccCCCCccEeecCCCcccccccc--cCCCcccccccCceEecCccCCCCCcccc
Q 002115 640 TLCELYNLEHLDISYCRNLRELPQG-IGKLRKLMYLENDGTYSLRYLPV--GIGELIRLRIVKEFVVGGGYDRACSLGSL 716 (965)
Q Consensus 640 ~i~~L~~L~~LdL~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~l 716 (965)
.+.++++|++|++++|. +..+|.. +.++++|++|++++| .+..+|. .++++++|+.|++..+....
T Consensus 95 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~--------- 163 (353)
T 2z80_A 95 SFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFT--------- 163 (353)
T ss_dssp TTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCC---------
T ss_pred hcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccc---------
Confidence 78899999999999988 7777776 788999999999888 4556665 57778888888776653111
Q ss_pred ccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEE
Q 002115 717 KKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRI 796 (965)
Q Consensus 717 ~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L 796 (965)
.++ ...+..+++|+.|++++|.+.+. .+..+..+++|+.|++
T Consensus 164 ---------------~~~------~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~l~~l~~L~~L~l 205 (353)
T 2z80_A 164 ---------------KIQ------RKDFAGLTFLEELEIDASDLQSY-----------------EPKSLKSIQNVSHLIL 205 (353)
T ss_dssp ---------------EEC------TTTTTTCCEEEEEEEEETTCCEE-----------------CTTTTTTCSEEEEEEE
T ss_pred ---------------ccC------HHHccCCCCCCEEECCCCCcCcc-----------------CHHHHhccccCCeecC
Confidence 000 02345567788888888865432 1345667788888888
Q ss_pred eeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC----CCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccC
Q 002115 797 YQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP----LGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIA 872 (965)
Q Consensus 797 ~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~----l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~ 872 (965)
++|.... +|..++..+++|+.|+|++|.+....+. ....+.++.+++
T Consensus 206 ~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L--------------------------- 256 (353)
T 2z80_A 206 HMKQHIL--LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF--------------------------- 256 (353)
T ss_dssp ECSCSTT--HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE---------------------------
T ss_pred CCCcccc--chhhhhhhcccccEEECCCCccccccccccccccccchhhcccc---------------------------
Confidence 8888765 6645556788888888888876543221 112233333333
Q ss_pred CcccccccccccccccccCcccccccccccCcccceEeeccCccCcCCCcCC-CCCCCCCeEeEcCCc
Q 002115 873 FPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPDRL-LQKTTLQALTIGECP 939 (965)
Q Consensus 873 f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~l-~~l~~L~~L~l~~c~ 939 (965)
.++. +....+. .+|..+..+++|+.|+|++|. ++.+|..+ ..+++|++|++++||
T Consensus 257 ---------~~~~-l~~~~l~-~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 257 ---------RNVK-ITDESLF-QVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ---------ESCB-CCHHHHH-HHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---------cccc-ccCcchh-hhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCC
Confidence 3221 2111111 234455678899999999996 56788774 788999999999886
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=6.6e-19 Score=200.56 Aligned_cols=301 Identities=17% Similarity=0.105 Sum_probs=149.1
Q ss_pred hcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCC-------------CcEEEe
Q 002115 562 HVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLH-------------LKYLNL 628 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~-------------Lr~L~L 628 (965)
..++|+.|.+.++. + ..+|..++++++|++|++++|.+. ..+|..++++.+ |++|++
T Consensus 9 ~~~~L~~L~l~~n~---l-~~iP~~i~~L~~L~~L~l~~n~~~------~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l 78 (454)
T 1jl5_A 9 SNTFLQEPLRHSSN---L-TEMPVEAENVKSKTEYYNAWSEWE------RNAPPGNGEQREMAVSRLRDCLDRQAHELEL 78 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHH------HTSCTTSCCCHHHHHHHHHHHHHHTCSEEEC
T ss_pred ccccchhhhcccCc---h-hhCChhHhcccchhhhhccCCccc------ccCCcccccchhcchhhhhhhhccCCCEEEe
Confidence 46789999998876 3 347888999999999999966553 457777777665 488999
Q ss_pred CCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccC
Q 002115 629 AHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYD 708 (965)
Q Consensus 629 ~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~ 708 (965)
++|. ++.+|.. .++|++|++++|. +..+|.. +++|++|++++| .+..+|.. .++|++|++..+....
T Consensus 79 ~~~~-l~~lp~~---~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n~l~~- 145 (454)
T 1jl5_A 79 NNLG-LSSLPEL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNNQLEK- 145 (454)
T ss_dssp TTSC-CSCCCSC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSS-CCSCCCSC---CTTCCEEECCSSCCSS-
T ss_pred cCCc-cccCCCC---cCCCCEEEccCCc-CCccccc---cCCCcEEECCCC-ccCcccCC---CCCCCEEECcCCCCCC-
Confidence 9888 7777762 4678888888887 6667753 366777777776 33333321 1466666666665543
Q ss_pred CCCCccccccCCcCCcceeec--cCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCC
Q 002115 709 RACSLGSLKKLNLLRYCRIHG--LGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALG 786 (965)
Q Consensus 709 ~~~~~~~l~~L~~L~~l~~~~--~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 786 (965)
.+ . +..+++|+.+.+.. +..++. ...+|+.|++++|.+++. ..+.
T Consensus 146 lp-~---~~~l~~L~~L~l~~N~l~~lp~----------~~~~L~~L~L~~n~l~~l-------------------~~~~ 192 (454)
T 1jl5_A 146 LP-E---LQNSSFLKIIDVDNNSLKKLPD----------LPPSLEFIAAGNNQLEEL-------------------PELQ 192 (454)
T ss_dssp CC-C---CTTCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCSSC-------------------CCCT
T ss_pred Cc-c---cCCCCCCCEEECCCCcCcccCC----------CcccccEEECcCCcCCcC-------------------cccc
Confidence 11 2 33333333333322 111221 123666666666644321 1234
Q ss_pred CCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCCCCceEeC-----------
Q 002115 787 PPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGVQSVKRVG----------- 855 (965)
Q Consensus 787 ~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~~l~~~~----------- 855 (965)
.+++|+.|++++|.+.. +| .. .++|+.|++++|.+. .+|.++.+++|++|++++|. ++.++
T Consensus 193 ~l~~L~~L~l~~N~l~~--l~-~~---~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l 264 (454)
T 1jl5_A 193 NLPFLTAIYADNNSLKK--LP-DL---PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNV 264 (454)
T ss_dssp TCTTCCEEECCSSCCSS--CC-CC---CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSC-CSSCCSCCTTCCEEEC
T ss_pred CCCCCCEEECCCCcCCc--CC-CC---cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCc-CCcccccccccCEEEC
Confidence 45555555555555544 43 11 235555555555443 44445555555555555432 11111
Q ss_pred --ccccCCCCCCCCccccCCccccccccccccccccc----------CcccccccccccC-cccceEeeccCccCcCCCc
Q 002115 856 --NEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEW----------DFGTAINGEIMIM-PRLSSLSIRRCPKLKALPD 922 (965)
Q Consensus 856 --~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~----------~~~~~~~~~~~~~-~~L~~L~L~~c~~l~~lp~ 922 (965)
+.+.+. ...+++|+.|+++++. ++.+ .+....-..+..+ ++|+.|++++|. +..+|.
T Consensus 265 ~~N~l~~l--------~~~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~-l~~lp~ 334 (454)
T 1jl5_A 265 RDNYLTDL--------PELPQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPA 334 (454)
T ss_dssp CSSCCSCC--------CCCCTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSCCCC
T ss_pred CCCccccc--------CcccCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCc-cccccc
Confidence 111110 0134566666666542 2221 1110000011123 478888888876 556775
Q ss_pred CCCCCCCCCeEeEcCCc
Q 002115 923 RLLQKTTLQALTIGECP 939 (965)
Q Consensus 923 ~l~~l~~L~~L~l~~c~ 939 (965)
. +++|++|++++|.
T Consensus 335 ~---~~~L~~L~L~~N~ 348 (454)
T 1jl5_A 335 L---PPRLERLIASFNH 348 (454)
T ss_dssp C---CTTCCEEECCSSC
T ss_pred c---CCcCCEEECCCCc
Confidence 4 5788888888874
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=6e-19 Score=195.12 Aligned_cols=266 Identities=14% Similarity=0.077 Sum_probs=187.5
Q ss_pred EEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEE
Q 002115 547 LNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYL 626 (965)
Q Consensus 547 l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L 626 (965)
...++...+|...+ ++|+.|.+.++. +....+..|.++++|++|+|++|.++ ...|..++++++|++|
T Consensus 38 ~~~~~l~~iP~~~~---~~L~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 38 GSSGSLNSIPSGLT---EAVKSLDLSNNR---ITYISNSDLQRCVNLQALVLTSNGIN------TIEEDSFSSLGSLEHL 105 (353)
T ss_dssp CCSTTCSSCCTTCC---TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEE
T ss_pred CCCCCccccccccc---ccCcEEECCCCc---CcccCHHHhccCCCCCEEECCCCccC------ccCHhhcCCCCCCCEE
Confidence 34455555555443 589999998876 44444556889999999999965543 2234668899999999
Q ss_pred EeCCccCccccchh-hhccCCCcEEeccCcccccccCc--cccCCCCccEeecCCCcccccc-cccCCCcccccccCceE
Q 002115 627 NLAHQREIEKLPET-LCELYNLEHLDISYCRNLRELPQ--GIGKLRKLMYLENDGTYSLRYL-PVGIGELIRLRIVKEFV 702 (965)
Q Consensus 627 ~L~~~~~i~~lp~~-i~~L~~L~~LdL~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~ 702 (965)
+|++|. ++.+|.. ++++++|++|++++|. +..+|. .+..+++|++|++++|..+..+ |..++++++|+.|++..
T Consensus 106 ~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 106 DLSYNY-LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp ECCSSC-CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred ECCCCc-CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 999998 7788765 8899999999999998 778876 6788999999999988545555 45788999999999988
Q ss_pred ecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhh
Q 002115 703 VGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLL 782 (965)
Q Consensus 703 ~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~ 782 (965)
+......+..+..++ +|+.+.+..... .... ...+..+++|+.|++++|.+++.... .+
T Consensus 184 n~l~~~~~~~l~~l~---~L~~L~l~~n~l-~~~~---~~~~~~~~~L~~L~L~~n~l~~~~~~--------------~l 242 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQ---NVSHLILHMKQH-ILLL---EIFVDVTSSVECLELRDTDLDTFHFS--------------EL 242 (353)
T ss_dssp TTCCEECTTTTTTCS---EEEEEEEECSCS-TTHH---HHHHHHTTTEEEEEEESCBCTTCCCC----------------
T ss_pred CCcCccCHHHHhccc---cCCeecCCCCcc-ccch---hhhhhhcccccEEECCCCcccccccc--------------cc
Confidence 876653344444444 444444443221 1111 12344578999999999987654321 11
Q ss_pred hcCCCCCCCceEEEeeecCCCC---CCChhhHhhccCCcEEEEecCCCCCCCCC--CCCCCCcceeeecCCC
Q 002115 783 EALGPPPNLKELRIYQYRGRRN---VVPKIWITSLTNLRVLSLFECRNCEHLPP--LGKLPSIEVLEIYGVQ 849 (965)
Q Consensus 783 ~~l~~~~~L~~L~L~~~~~~~~---~~p~~~~~~l~~L~~L~L~~~~~~~~lp~--l~~L~~L~~L~L~~~~ 849 (965)
......+.++.+++.++..... .+| .++..+++|+.|+|++|.+. .+|. ++++++|++|+|++|+
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~-~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVM-KLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHH-HHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccchhhccccccccccCcchhhhH-HHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 1223456788888888765431 134 57788999999999999877 4555 6899999999999864
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=6.3e-19 Score=190.79 Aligned_cols=244 Identities=22% Similarity=0.201 Sum_probs=159.8
Q ss_pred EEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCc
Q 002115 545 LMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLK 624 (965)
Q Consensus 545 L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr 624 (965)
+....+++..+|...+ ++++.|.+.++. +..+.+..|.++++|++|+|++|.++. +...|..+..+++|+
T Consensus 12 l~c~~~~l~~ip~~~~---~~l~~L~L~~n~---l~~i~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~~~~~~L~ 81 (306)
T 2z66_A 12 IRCNSKGLTSVPTGIP---SSATRLELESNK---LQSLPHGVFDKLTQLTKLSLSSNGLSF----KGCCSQSDFGTTSLK 81 (306)
T ss_dssp EECCSSCCSSCCSCCC---TTCCEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCCE----EEEEEHHHHSCSCCC
T ss_pred EEcCCCCcccCCCCCC---CCCCEEECCCCc---cCccCHhHhhccccCCEEECCCCccCc----ccCcccccccccccC
Confidence 3333444444444332 577788887765 334334456788888888888655431 112245566778888
Q ss_pred EEEeCCccCccccchhhhccCCCcEEeccCcccccccCc--cccCCCCccEeecCCCcccccccccCCCcccccccCceE
Q 002115 625 YLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQ--GIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFV 702 (965)
Q Consensus 625 ~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 702 (965)
+|+|++|. +..+|..+.++++|++|++++|. +..+|. .+..+++|++|++++|......|..++.+++|+.|++..
T Consensus 82 ~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 82 YLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp EEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred EEECCCCc-cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence 88888887 77777778888888888888877 666553 577788888888888755555555667777777776654
Q ss_pred ecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhh
Q 002115 703 VGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLL 782 (965)
Q Consensus 703 ~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~ 782 (965)
+..... ..+ ..+..+++|+.|++++|.+++.. +
T Consensus 160 n~l~~~-----------------------~~~-------~~~~~l~~L~~L~Ls~n~l~~~~-----------------~ 192 (306)
T 2z66_A 160 NSFQEN-----------------------FLP-------DIFTELRNLTFLDLSQCQLEQLS-----------------P 192 (306)
T ss_dssp CEEGGG-----------------------EEC-------SCCTTCTTCCEEECTTSCCCEEC-----------------T
T ss_pred Cccccc-----------------------cch-------hHHhhCcCCCEEECCCCCcCCcC-----------------H
Confidence 432210 001 23445567788888777553321 2
Q ss_pred hcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCC-CcceeeecCCC
Q 002115 783 EALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLP-SIEVLEIYGVQ 849 (965)
Q Consensus 783 ~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~-~L~~L~L~~~~ 849 (965)
..+..+++|+.|++++|.+.. .+...+..+++|+.|+|++|.+....|. ++.+| +|++|+|++|+
T Consensus 193 ~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 193 TAFNSLSSLQVLNMSHNNFFS--LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCSB--CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred HHhcCCCCCCEEECCCCccCc--cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 345667788888888888776 5535677788888888888877766554 77775 88888888754
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=6.3e-18 Score=198.23 Aligned_cols=256 Identities=20% Similarity=0.184 Sum_probs=154.4
Q ss_pred CceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhc
Q 002115 564 KRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCE 643 (965)
Q Consensus 564 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~ 643 (965)
.++++|.+.++... . +|..+. ++|++|+|++|. +..+|. .+++|++|+|++|. ++.+|. .
T Consensus 40 ~~l~~L~ls~n~L~---~-lp~~l~--~~L~~L~L~~N~-------l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~ 99 (622)
T 3g06_A 40 NGNAVLNVGESGLT---T-LPDCLP--AHITTLVIPDNN-------LTSLPA---LPPELRTLEVSGNQ-LTSLPV---L 99 (622)
T ss_dssp HCCCEEECCSSCCS---C-CCSCCC--TTCSEEEECSCC-------CSCCCC---CCTTCCEEEECSCC-CSCCCC---C
T ss_pred CCCcEEEecCCCcC---c-cChhhC--CCCcEEEecCCC-------CCCCCC---cCCCCCEEEcCCCc-CCcCCC---C
Confidence 45778888777633 2 343332 678888888444 344554 56788888888887 777776 6
Q ss_pred cCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcCC
Q 002115 644 LYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLR 723 (965)
Q Consensus 644 L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 723 (965)
+++|++|++++|. +..+|. .+++|++|++++| .+..+|..+ ++|+.|++..|....
T Consensus 100 l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N-~l~~lp~~l---~~L~~L~Ls~N~l~~---------------- 155 (622)
T 3g06_A 100 PPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGN-QLTSLPVLP---PGLQELSVSDNQLAS---------------- 155 (622)
T ss_dssp CTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCSSCCSC----------------
T ss_pred CCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCC-CCCcCCCCC---CCCCEEECcCCcCCC----------------
Confidence 7888888888887 777776 5677888888877 455566543 666777665544332
Q ss_pred cceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCC
Q 002115 724 YCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRR 803 (965)
Q Consensus 724 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 803 (965)
++ ....+|+.|+++.|.++.. + ..+++|+.|++++|.+..
T Consensus 156 ---------l~----------~~~~~L~~L~L~~N~l~~l------------------~---~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 156 ---------LP----------ALPSELCKLWAYNNQLTSL------------------P---MLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp ---------CC----------CCCTTCCEEECCSSCCSCC------------------C---CCCTTCCEEECCSSCCSC
T ss_pred ---------cC----------CccCCCCEEECCCCCCCCC------------------c---ccCCCCcEEECCCCCCCC
Confidence 00 0123566666666544321 1 234566677776666655
Q ss_pred CCCChhhHhhccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccccccccc
Q 002115 804 NVVPKIWITSLTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDE 883 (965)
Q Consensus 804 ~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~ 883 (965)
+| . .+++|+.|++++|.+. .+|. .+++|++|+|++|. ++.++ ..+++|+.|++++
T Consensus 196 --l~-~---~~~~L~~L~L~~N~l~-~l~~--~~~~L~~L~Ls~N~-L~~lp---------------~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 196 --LP-T---LPSELYKLWAYNNRLT-SLPA--LPSGLKELIVSGNR-LTSLP---------------VLPSELKELMVSG 250 (622)
T ss_dssp --CC-C---CCTTCCEEECCSSCCS-SCCC--CCTTCCEEECCSSC-CSCCC---------------CCCTTCCEEECCS
T ss_pred --CC-C---ccchhhEEECcCCccc-ccCC--CCCCCCEEEccCCc-cCcCC---------------CCCCcCcEEECCC
Confidence 54 2 2456667777666544 3333 24667777776643 21111 1456677776666
Q ss_pred cccccccCcccccccccccCcccceEeeccCccCcCCCcCCCCCCCCCeEeEcCCc
Q 002115 884 MDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPDRLLQKTTLQALTIGECP 939 (965)
Q Consensus 884 ~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 939 (965)
|. ++.+ |. .+++|+.|+|++|. +..+|..+..+++|+.|++++|+
T Consensus 251 N~-L~~l------p~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 251 NR-LTSL------PM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp SC-CSCC------CC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCC
T ss_pred CC-CCcC------Cc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCC
Confidence 52 3322 22 45667777777774 45667666677777777777775
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=1.1e-18 Score=188.92 Aligned_cols=80 Identities=16% Similarity=0.225 Sum_probs=54.0
Q ss_pred CccceEEcCcccccccccchhhHHhh-hhccCCCcEEEeCCccCcccc---chhhhccCCCcEEeccCcccccccCcccc
Q 002115 591 TCLRALTLGVHSLRLCENCIKEVRTN-IENLLHLKYLNLAHQREIEKL---PETLCELYNLEHLDISYCRNLRELPQGIG 666 (965)
Q Consensus 591 ~~Lr~L~L~~n~l~~~~~~i~~lp~~-i~~L~~Lr~L~L~~~~~i~~l---p~~i~~L~~L~~LdL~~~~~l~~lP~~i~ 666 (965)
++|++|+|++|. +..+|.. +.++++|++|+|++|. +..+ |..+..+++|++|++++|. +..+|..+.
T Consensus 28 ~~l~~L~L~~n~-------l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~ 98 (306)
T 2z66_A 28 SSATRLELESNK-------LQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFL 98 (306)
T ss_dssp TTCCEEECCSSC-------CCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEE
T ss_pred CCCCEEECCCCc-------cCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCc-cccChhhcC
Confidence 567777777433 3445543 5677777777777776 5443 5566677777777777776 666776777
Q ss_pred CCCCccEeecCCC
Q 002115 667 KLRKLMYLENDGT 679 (965)
Q Consensus 667 ~L~~L~~L~l~~~ 679 (965)
.+++|++|++++|
T Consensus 99 ~l~~L~~L~l~~n 111 (306)
T 2z66_A 99 GLEQLEHLDFQHS 111 (306)
T ss_dssp TCTTCCEEECTTS
T ss_pred CCCCCCEEECCCC
Confidence 7777777777776
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=5.7e-19 Score=210.35 Aligned_cols=354 Identities=16% Similarity=0.088 Sum_probs=205.9
Q ss_pred EEEEEEEeCCC-cc-chhhHhhhcCceeEEEeccccccccc-ccchHHhhcCCccceEEcCcccccccccchhhHHhhhh
Q 002115 542 VLHLMLNLDGR-HL-VSISIWDHVKRLRSLLVESYEYSWSS-EVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIE 618 (965)
Q Consensus 542 ~r~L~l~~~~~-~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~-~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~ 618 (965)
+++|.+..+.. .. ........+++|+.|.+.++...... ..++..+..++.|+.|+|++|.++ +.....++..+.
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~--~~~~~~l~~~~~ 217 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA--KISPKDLETIAR 217 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCS--SCCHHHHHHHHH
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCC--ccCHHHHHHHHh
Confidence 66666665441 10 11122236778888888776532111 114445667788888888866553 233345666677
Q ss_pred ccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccc---cccCccccCCCCccEeecCCCcccccccccCCCcccc
Q 002115 619 NLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNL---RELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRL 695 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l---~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 695 (965)
++++|++|+|++|. +..+|..+.++++|+.|+++++... ...+..+..+++|+.|++.++ ....+|..+..+++|
T Consensus 218 ~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 218 NCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQI 295 (592)
T ss_dssp HCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGC
T ss_pred hCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCC
Confidence 78888888888887 7778888888888888888754322 233455677778888887765 445667777778888
Q ss_pred cccCceEecCccCCCCCc-cccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEe-----------eccCCC
Q 002115 696 RIVKEFVVGGGYDRACSL-GSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHF-----------DHLRDG 763 (965)
Q Consensus 696 ~~L~l~~~~~~~~~~~~~-~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~-----------~~l~~~ 763 (965)
+.|++..+.... ..+ .-+..+++|+.+.+.. .+ ...........+++|++|+++. +.+
T Consensus 296 ~~L~Ls~~~l~~---~~~~~~~~~~~~L~~L~L~~--~~--~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~--- 365 (592)
T 3ogk_B 296 RKLDLLYALLET---EDHCTLIQKCPNLEVLETRN--VI--GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV--- 365 (592)
T ss_dssp CEEEETTCCCCH---HHHHHHHTTCTTCCEEEEEG--GG--HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC---
T ss_pred cEEecCCCcCCH---HHHHHHHHhCcCCCEEeccC--cc--CHHHHHHHHHhCCCCCEEEeecCccccccccccCcc---
Confidence 888877665322 111 1234555555555541 11 1122333345677888888883 211
Q ss_pred CcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHh-hccCCcEEEEecCC---CCCCCC------C
Q 002115 764 DEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWIT-SLTNLRVLSLFECR---NCEHLP------P 833 (965)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~-~l~~L~~L~L~~~~---~~~~lp------~ 833 (965)
....+......+++|++|.+..+.+... .+ ..+. .+++|+.|+|+++. .....| .
T Consensus 366 -------------~~~~~~~l~~~~~~L~~L~l~~~~l~~~-~~-~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~ 430 (592)
T 3ogk_B 366 -------------SQRGLIALAQGCQELEYMAVYVSDITNE-SL-ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430 (592)
T ss_dssp -------------CHHHHHHHHHHCTTCSEEEEEESCCCHH-HH-HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred -------------CHHHHHHHHhhCccCeEEEeecCCccHH-HH-HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence 1111222223467888888866655441 11 2333 48888888887432 222221 1
Q ss_pred -CCCCCCcceeeecCCCC-ceEeCccccCCCCCCCCccccCCcccccccccccccccccCcccccccccccCcccceEee
Q 002115 834 -LGKLPSIEVLEIYGVQS-VKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSI 911 (965)
Q Consensus 834 -l~~L~~L~~L~L~~~~~-l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L 911 (965)
+.++++|++|+|+.|.+ +.. ..+... ...+|+|+.|++++|. +... .++..+..+++|++|+|
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~--~~~~~~--------~~~~~~L~~L~L~~n~-l~~~----~~~~~~~~~~~L~~L~l 495 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTD--LGLSYI--------GQYSPNVRWMLLGYVG-ESDE----GLMEFSRGCPNLQKLEM 495 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCH--HHHHHH--------HHSCTTCCEEEECSCC-SSHH----HHHHHHTCCTTCCEEEE
T ss_pred HHHhCCCCCEEEEecCCCCccH--HHHHHH--------HHhCccceEeeccCCC-CCHH----HHHHHHhcCcccCeeec
Confidence 44578888888876542 110 000000 1247788888877664 3221 22333456788888888
Q ss_pred ccCccCc-CCCcCCCCCCCCCeEeEcCCc
Q 002115 912 RRCPKLK-ALPDRLLQKTTLQALTIGECP 939 (965)
Q Consensus 912 ~~c~~l~-~lp~~l~~l~~L~~L~l~~c~ 939 (965)
++|+... .++..+..+++|++|++++|+
T Consensus 496 ~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 496 RGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp ESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 8887321 134444567888888888887
No 60
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=6.2e-19 Score=210.07 Aligned_cols=358 Identities=13% Similarity=0.037 Sum_probs=232.0
Q ss_pred ceEEEEEEEeCCCccchhhHhhh-cCc-eeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhh
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDH-VKR-LRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNI 617 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~-~~~-Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i 617 (965)
..+++|.+..+.+.......+.. +++ |++|.+.++... ....++....++++|++|+|++|.++ +.....++..+
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~~~--~~~~~~l~~~~ 188 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF-TTDGLLSIVTHCRKIKTLLMEESSFS--EKDGKWLHELA 188 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE-EHHHHHHHHHHCTTCSEEECTTCEEE--CCCSHHHHHHH
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc-CHHHHHHHHhhCCCCCEEECcccccc--CcchhHHHHHH
Confidence 46788888877654322222223 445 999999887521 12224555678999999999988765 44444466666
Q ss_pred hccCCCcEEEeCCccCcc-----ccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCccc---ccccccC
Q 002115 618 ENLLHLKYLNLAHQREIE-----KLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSL---RYLPVGI 689 (965)
Q Consensus 618 ~~L~~Lr~L~L~~~~~i~-----~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~---~~~p~~i 689 (965)
..+++|++|++++|. +. .++..+.++++|++|++++|. +..+|..+..+++|++|+++.+... ...+..+
T Consensus 189 ~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred hcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 789999999999998 53 566677899999999999988 7778888999999999999754222 2344567
Q ss_pred CCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCccccc
Q 002115 690 GELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAG 769 (965)
Q Consensus 690 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~ 769 (965)
..+++|+.|.+..+.... .+.. +..+++|+.+.+.... +. .......+..+++|+.|+++.+ +
T Consensus 267 ~~~~~L~~L~l~~~~~~~-l~~~---~~~~~~L~~L~Ls~~~-l~--~~~~~~~~~~~~~L~~L~L~~~-~--------- 329 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNE-MPIL---FPFAAQIRKLDLLYAL-LE--TEDHCTLIQKCPNLEVLETRNV-I--------- 329 (592)
T ss_dssp CCCTTCCEEEETTCCTTT-GGGG---GGGGGGCCEEEETTCC-CC--HHHHHHHHTTCTTCCEEEEEGG-G---------
T ss_pred hccccccccCccccchhH-HHHH---HhhcCCCcEEecCCCc-CC--HHHHHHHHHhCcCCCEEeccCc-c---------
Confidence 778888888665432211 1222 3344455555555443 22 2233344678899999999843 1
Q ss_pred CCCCChhhhHHhhhcCCCCCCCceEEEee----------e-cCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCC-
Q 002115 770 RRDNEEDEDERLLEALGPPPNLKELRIYQ----------Y-RGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGK- 836 (965)
Q Consensus 770 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~----------~-~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~- 836 (965)
....+......+++|++|+|.+ + ......++ .....+++|++|+|+.+.+....+. ++.
T Consensus 330 -------~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~-~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 401 (592)
T 3ogk_B 330 -------GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI-ALAQGCQELEYMAVYVSDITNESLESIGTY 401 (592)
T ss_dssp -------HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH-HHHHHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred -------CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH-HHHhhCccCeEEEeecCCccHHHHHHHHhh
Confidence 1222233334578899999994 3 33221122 3345699999999977766543322 444
Q ss_pred CCCcceeeecCC---CCceEeCc--cccCCCCCCCCccccCCccccccccccccc-ccccCcccccccccccCcccceEe
Q 002115 837 LPSIEVLEIYGV---QSVKRVGN--EFLGVESDTDGSSVIAFPKLKQLRFDEMDV-LEEWDFGTAINGEIMIMPRLSSLS 910 (965)
Q Consensus 837 L~~L~~L~L~~~---~~l~~~~~--~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~-L~~~~~~~~~~~~~~~~~~L~~L~ 910 (965)
+++|+.|++++| ..++..+. .+. ....++++|+.|+++.|.+ +....+ ......+++|+.|+
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~--------~~~~~~~~L~~L~L~~~~~~l~~~~~----~~~~~~~~~L~~L~ 469 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVR--------SLLIGCKKLRRFAFYLRQGGLTDLGL----SYIGQYSPNVRWML 469 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHH--------HHHHHCTTCCEEEEECCGGGCCHHHH----HHHHHSCTTCCEEE
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHH--------HHHHhCCCCCEEEEecCCCCccHHHH----HHHHHhCccceEee
Confidence 899999999853 33321110 000 0123589999999977653 222111 11122589999999
Q ss_pred eccCccCc-CCCcCCCCCCCCCeEeEcCCc
Q 002115 911 IRRCPKLK-ALPDRLLQKTTLQALTIGECP 939 (965)
Q Consensus 911 L~~c~~l~-~lp~~l~~l~~L~~L~l~~c~ 939 (965)
|++|.... .++..+..+++|++|+|++|+
T Consensus 470 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 470 LGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp ECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred ccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 99997432 345556778999999999998
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=3.4e-19 Score=193.59 Aligned_cols=222 Identities=14% Similarity=0.077 Sum_probs=122.6
Q ss_pred hhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccc
Q 002115 557 ISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEK 636 (965)
Q Consensus 557 ~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~ 636 (965)
...+..+++|+.|.+.++. +....|..|.++++|++|+|++|.++ ..+. +..+++|++|+|++|. ++.
T Consensus 27 ~~~~~~~~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~-------~~~~-~~~l~~L~~L~Ls~n~-l~~ 94 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLSSNVLY-------ETLD-LESLSTLRTLDLNNNY-VQE 94 (317)
T ss_dssp HHHHTTGGGCSEEECTTSC---CCCCCHHHHTTCTTCCEEECTTSCCE-------EEEE-ETTCTTCCEEECCSSE-EEE
T ss_pred HHHhccCCCCCEEECcCCc---cCcCCHHHhhCCCcCCEEECCCCcCC-------cchh-hhhcCCCCEEECcCCc-ccc
Confidence 3444445566666666654 33334455666666666666644432 2222 5566666666666666 555
Q ss_pred cchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCcccc
Q 002115 637 LPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSL 716 (965)
Q Consensus 637 lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l 716 (965)
+|. +++|++|++++|. +..+|.. .+++|++|++++|......|..++.+++|+.|++..+......
T Consensus 95 l~~----~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------- 160 (317)
T 3o53_A 95 LLV----GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN------- 160 (317)
T ss_dssp EEE----CTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE-------
T ss_pred ccC----CCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc-------
Confidence 542 3566666666665 4444322 2556666666666433333334555556665555443322100
Q ss_pred ccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEE
Q 002115 717 KKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRI 796 (965)
Q Consensus 717 ~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L 796 (965)
+ ......+++|+.|++++|.++.. .....+++|+.|++
T Consensus 161 -----------------~------~~~~~~l~~L~~L~L~~N~l~~~-------------------~~~~~l~~L~~L~L 198 (317)
T 3o53_A 161 -----------------F------AELAASSDTLEHLNLQYNFIYDV-------------------KGQVVFAKLKTLDL 198 (317)
T ss_dssp -----------------G------GGGGGGTTTCCEEECTTSCCCEE-------------------ECCCCCTTCCEEEC
T ss_pred -----------------H------HHHhhccCcCCEEECCCCcCccc-------------------ccccccccCCEEEC
Confidence 0 01112446677777777654321 12224667777777
Q ss_pred eeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCCC
Q 002115 797 YQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGVQ 849 (965)
Q Consensus 797 ~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~ 849 (965)
++|.+.. +| ..+..+++|+.|+|++|.+....+.++.+++|+.|++++|+
T Consensus 199 s~N~l~~--l~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 199 SSNKLAF--MG-PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CSSCCCE--EC-GGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred CCCcCCc--ch-hhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCC
Confidence 7777766 55 34667777777777777665432336677777777777654
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=3.1e-18 Score=196.13 Aligned_cols=217 Identities=19% Similarity=0.170 Sum_probs=136.9
Q ss_pred eeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccc-hhhhcc
Q 002115 566 LRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLP-ETLCEL 644 (965)
Q Consensus 566 Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp-~~i~~L 644 (965)
.+.+...+... .. +|..+ .++|++|+|++|.++ ...|..+.++++|++|+|++|. +..++ ..|.++
T Consensus 56 ~~~v~c~~~~l---~~-iP~~~--~~~l~~L~L~~n~i~------~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l 122 (452)
T 3zyi_A 56 FSKVVCTRRGL---SE-VPQGI--PSNTRYLNLMENNIQ------MIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGL 122 (452)
T ss_dssp SCEEECCSSCC---SS-CCSCC--CTTCSEEECCSSCCC------EECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTC
T ss_pred CcEEEECCCCc---Cc-cCCCC--CCCccEEECcCCcCc------eECHHHcCCCCCCCEEECCCCc-cCCcChhhccCc
Confidence 45666665543 22 34323 268999999966553 2235678999999999999999 66555 689999
Q ss_pred CCCcEEeccCcccccccCcc-ccCCCCccEeecCCCcccccccc-cCCCcccccccCceEecCccCCCCCccccccCCcC
Q 002115 645 YNLEHLDISYCRNLRELPQG-IGKLRKLMYLENDGTYSLRYLPV-GIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLL 722 (965)
Q Consensus 645 ~~L~~LdL~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 722 (965)
++|++|+|++|. +..+|.. +..+++|++|++++|. +..+|. .+.++++|+.|++..+......+.
T Consensus 123 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~----------- 189 (452)
T 3zyi_A 123 ASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISE----------- 189 (452)
T ss_dssp TTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECT-----------
T ss_pred ccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccCh-----------
Confidence 999999999998 7777765 7889999999999995 445554 688889999888765322210000
Q ss_pred CcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCC
Q 002115 723 RYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGR 802 (965)
Q Consensus 723 ~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 802 (965)
..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.
T Consensus 190 -------------------~~~~~l~~L~~L~L~~n~l~~~-------------------~~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 190 -------------------GAFEGLFNLKYLNLGMCNIKDM-------------------PNLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp -------------------TTTTTCTTCCEEECTTSCCSSC-------------------CCCTTCTTCCEEECTTSCCS
T ss_pred -------------------hhccCCCCCCEEECCCCccccc-------------------ccccccccccEEECcCCcCc
Confidence 1233444555555555543221 12344555556666555554
Q ss_pred CCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCC
Q 002115 803 RNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGV 848 (965)
Q Consensus 803 ~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~ 848 (965)
. +++.+|..+++|+.|+|++|.+....+. +.++++|+.|+|++|
T Consensus 232 ~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 232 E--IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp E--ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred c--cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 4 3324555555666666655555443333 555556666666554
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=2.6e-19 Score=194.52 Aligned_cols=252 Identities=13% Similarity=0.109 Sum_probs=126.9
Q ss_pred ccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccc
Q 002115 581 EVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRE 660 (965)
Q Consensus 581 ~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~ 660 (965)
..+...+..+++|++|+|++|.++ ...|..++++++|++|+|++|. +...+. +..+++|++|++++|. +..
T Consensus 24 ~~~~~~~~~~~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~-l~~ 94 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLSGNPLS------QISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQE 94 (317)
T ss_dssp HHHHHHHTTGGGCSEEECTTSCCC------CCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSE-EEE
T ss_pred hhHHHHhccCCCCCEEECcCCccC------cCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCc-ccc
Confidence 334444556667777777754443 2234566677777777777776 554444 6677777777777766 554
Q ss_pred cCccccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHH
Q 002115 661 LPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEAR 740 (965)
Q Consensus 661 lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~ 740 (965)
+| .+++|++|++++|. +..++.. .+++|+.|++..+......
T Consensus 95 l~----~~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~~------------------------------- 136 (317)
T 3o53_A 95 LL----VGPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLR------------------------------- 136 (317)
T ss_dssp EE----ECTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCSGG-------------------------------
T ss_pred cc----CCCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCCcc-------------------------------
Confidence 44 23667777776663 2222221 2344555544333222100
Q ss_pred HhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcC-CCCCCCceEEEeeecCCCCCCChhhHhhccCCcE
Q 002115 741 RAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEAL-GPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRV 819 (965)
Q Consensus 741 ~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~ 819 (965)
...+..+++|+.|++++|.+.+.. +..+ ..+++|+.|++++|.+.. ++ .. ..+++|+.
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~-----------------~~~~~~~l~~L~~L~L~~N~l~~--~~-~~-~~l~~L~~ 195 (317)
T 3o53_A 137 DLDEGCRSRVQYLDLKLNEIDTVN-----------------FAELAASSDTLEHLNLQYNFIYD--VK-GQ-VVFAKLKT 195 (317)
T ss_dssp GBCTGGGSSEEEEECTTSCCCEEE-----------------GGGGGGGTTTCCEEECTTSCCCE--EE-CC-CCCTTCCE
T ss_pred chhhhccCCCCEEECCCCCCCccc-----------------HHHHhhccCcCCEEECCCCcCcc--cc-cc-cccccCCE
Confidence 012233445666666665443211 1111 234556666666666554 33 11 13566666
Q ss_pred EEEecCCCCCCCCCCCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccccccccccccccccCcccccccc
Q 002115 820 LSLFECRNCEHLPPLGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGE 899 (965)
Q Consensus 820 L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~ 899 (965)
|+|++|.+....+.+..+++|+.|+|++|. ++.++..+ ..+++|+.|++++++ +.. ...+..
T Consensus 196 L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~------------~~l~~L~~L~l~~N~-~~~----~~~~~~ 257 (317)
T 3o53_A 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKAL------------RFSQNLEHFDLRGNG-FHC----GTLRDF 257 (317)
T ss_dssp EECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTC------------CCCTTCCEEECTTCC-CBH----HHHHHH
T ss_pred EECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhHh------------hcCCCCCEEEccCCC-ccC----cCHHHH
Confidence 666666554433335566666666666543 33333221 135566666655543 110 122333
Q ss_pred cccCcccceEeeccCccCc
Q 002115 900 IMIMPRLSSLSIRRCPKLK 918 (965)
Q Consensus 900 ~~~~~~L~~L~L~~c~~l~ 918 (965)
+..+++|+.|++.+|+.+.
T Consensus 258 ~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 258 FSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp HHTCHHHHHHHHHHHHHHH
T ss_pred HhccccceEEECCCchhcc
Confidence 4455666666666555444
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=2.4e-17 Score=187.96 Aligned_cols=99 Identities=21% Similarity=0.232 Sum_probs=71.2
Q ss_pred cceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccc-hhhhccCCCcEEeccCcccccccC-ccccCCCC
Q 002115 593 LRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLP-ETLCELYNLEHLDISYCRNLRELP-QGIGKLRK 670 (965)
Q Consensus 593 Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~LdL~~~~~l~~lP-~~i~~L~~ 670 (965)
.+.++.+ +..+..+|..+. .+|++|+|++|. +..++ ..|.++++|++|+|++|. +..++ ..+.++++
T Consensus 45 ~~~v~c~-------~~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~ 113 (440)
T 3zyj_A 45 FSKVICV-------RKNLREVPDGIS--TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLAN 113 (440)
T ss_dssp SCEEECC-------SCCCSSCCSCCC--TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSS
T ss_pred CCEEEeC-------CCCcCcCCCCCC--CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCcc
Confidence 4566766 455567776554 688999999998 66655 678889999999999988 55554 56788899
Q ss_pred ccEeecCCCcccccccc-cCCCcccccccCceEe
Q 002115 671 LMYLENDGTYSLRYLPV-GIGELIRLRIVKEFVV 703 (965)
Q Consensus 671 L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~ 703 (965)
|++|++++| .+..+|. .+..+++|+.|++..+
T Consensus 114 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 114 LNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp CCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSC
T ss_pred CCEEECCCC-cCCeeCHhHhhccccCceeeCCCC
Confidence 999999888 4445544 4666666666665544
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=2.6e-20 Score=214.60 Aligned_cols=366 Identities=16% Similarity=0.097 Sum_probs=232.7
Q ss_pred ceEEEEEEEeCCCccc----hhhHhhhcCceeEEEeccccccccccc-chHHhhcCC----ccceEEcCcccccccccch
Q 002115 540 KKVLHLMLNLDGRHLV----SISIWDHVKRLRSLLVESYEYSWSSEV-LPQLFDKLT----CLRALTLGVHSLRLCENCI 610 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~----~~~~~~~~~~Lr~L~l~~~~~~~~~~~-l~~~~~~l~----~Lr~L~L~~n~l~~~~~~i 610 (965)
+.++.+.+..+.+... ....+..+++|++|.+.++.. ... +...+..++ +|++|+|++|.++ ....
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l---~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~--~~~~ 102 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL---GDVGVHCVLQGLQTPSCKIQKLSLQNCCLT--GAGC 102 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC---HHHHHHHHHHTTCSTTCCCCEEECTTSCCB--GGGH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC---ChHHHHHHHHHHhhCCCceeEEEccCCCCC--HHHH
Confidence 4688899998887632 123344779999999998763 221 223344555 7999999988876 5555
Q ss_pred hhHHhhhhccCCCcEEEeCCccCccc-cchhhhc-----cCCCcEEeccCccccc----ccCccccCCCCccEeecCCCc
Q 002115 611 KEVRTNIENLLHLKYLNLAHQREIEK-LPETLCE-----LYNLEHLDISYCRNLR----ELPQGIGKLRKLMYLENDGTY 680 (965)
Q Consensus 611 ~~lp~~i~~L~~Lr~L~L~~~~~i~~-lp~~i~~-----L~~L~~LdL~~~~~l~----~lP~~i~~L~~L~~L~l~~~~ 680 (965)
..+|..+..+++|++|+|++|. ++. .+..+.. +++|++|++++|.... .++..+..+++|++|++++|.
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 6789999999999999999999 543 3333332 5689999999998332 246667788999999999995
Q ss_pred ccccccccCC-----CcccccccCceEecCccCCCC-CccccccCCcCCcceeeccCCCCCH-hHHH-HhhccCCCCCCc
Q 002115 681 SLRYLPVGIG-----ELIRLRIVKEFVVGGGYDRAC-SLGSLKKLNLLRYCRIHGLGDVSDA-GEAR-RAELEKKKNLSN 752 (965)
Q Consensus 681 ~~~~~p~~i~-----~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~~l~~~~~~~~~~~-~~~~-~~~l~~~~~L~~ 752 (965)
.....+..+. .+++|+.|++..+........ ....+..++.|+.+.+.... +... ...+ ......+++|+.
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~ 260 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRT 260 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCE
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceE
Confidence 4332222232 356899998887765541100 11234455666666555432 1111 1111 222345789999
Q ss_pred eEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHh-----hccCCcEEEEecCCC
Q 002115 753 LELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWIT-----SLTNLRVLSLFECRN 827 (965)
Q Consensus 753 L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~-----~l~~L~~L~L~~~~~ 827 (965)
|++++|.++.. ....+...+..+++|+.|++++|.+.. .....+. ..++|++|+|++|.+
T Consensus 261 L~L~~n~l~~~-------------~~~~l~~~l~~~~~L~~L~Ls~n~i~~--~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 261 LWIWECGITAK-------------GCGDLCRVLRAKESLKELSLAGNELGD--EGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp EECTTSCCCHH-------------HHHHHHHHHHHCTTCCEEECTTCCCHH--HHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred EECcCCCCCHH-------------HHHHHHHHHhhCCCcceEECCCCCCch--HHHHHHHHHhccCCccceeeEcCCCCC
Confidence 99999865321 222345556668999999999997654 1112233 236999999999987
Q ss_pred CCC----CCC-CCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccccccccccccccccCccccccccccc
Q 002115 828 CEH----LPP-LGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMI 902 (965)
Q Consensus 828 ~~~----lp~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~ 902 (965)
... ++. +..+++|++|+|++|. +...+....... .....++|+.|++++|. +..... ..+|..+..
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~------l~~~~~~L~~L~L~~n~-i~~~~~-~~l~~~l~~ 396 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQG------LGQPGSVLRVLWLADCD-VSDSSC-SSLAATLLA 396 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHH------HTSTTCCCCEEECTTSC-CCHHHH-HHHHHHHHH
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHH------HcCCCCceEEEECCCCC-CChhhH-HHHHHHHHh
Confidence 653 233 6678999999999874 321111100000 00126799999988874 322100 134556667
Q ss_pred CcccceEeeccCccCcC--------CCcCCCCCCCCCeEeEcCCc
Q 002115 903 MPRLSSLSIRRCPKLKA--------LPDRLLQKTTLQALTIGECP 939 (965)
Q Consensus 903 ~~~L~~L~L~~c~~l~~--------lp~~l~~l~~L~~L~l~~c~ 939 (965)
+++|+.|+|++|+.... +|.. ..+|+.|.+.++.
T Consensus 397 ~~~L~~L~l~~N~i~~~~~~~l~~~l~~~---~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 397 NHSLRELDLSNNCLGDAGILQLVESVRQP---GCLLEQLVLYDIY 438 (461)
T ss_dssp CCCCCEEECCSSSCCHHHHHHHHHHHTST---TCCCCEEECTTCC
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHhccC---Ccchhheeecccc
Confidence 99999999999975322 3332 3467777776654
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=5.3e-18 Score=193.46 Aligned_cols=239 Identities=18% Similarity=0.185 Sum_probs=141.1
Q ss_pred eeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhH-HhhhhccCCCcEEEeCCccCccccc-hhhhc
Q 002115 566 LRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEV-RTNIENLLHLKYLNLAHQREIEKLP-ETLCE 643 (965)
Q Consensus 566 Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~l-p~~i~~L~~Lr~L~L~~~~~i~~lp-~~i~~ 643 (965)
.+.+...+... .. +|..+ .+++++|+|++|.+ ..+ +..+.++++|++|+|++|. +..++ ..|.+
T Consensus 45 ~~~v~c~~~~l---~~-iP~~~--~~~l~~L~L~~n~i-------~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~ 110 (440)
T 3zyj_A 45 FSKVICVRKNL---RE-VPDGI--STNTRLLNLHENQI-------QIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNG 110 (440)
T ss_dssp SCEEECCSCCC---SS-CCSCC--CTTCSEEECCSCCC-------CEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTT
T ss_pred CCEEEeCCCCc---Cc-CCCCC--CCCCcEEEccCCcC-------CeeCHHHhhCCCCCCEEECCCCc-CCccChhhccC
Confidence 45666666543 23 44333 36899999996655 343 4678999999999999999 66665 68999
Q ss_pred cCCCcEEeccCcccccccCc-cccCCCCccEeecCCCccccccc-ccCCCcccccccCceEecCcc-CCCCCccccccCC
Q 002115 644 LYNLEHLDISYCRNLRELPQ-GIGKLRKLMYLENDGTYSLRYLP-VGIGELIRLRIVKEFVVGGGY-DRACSLGSLKKLN 720 (965)
Q Consensus 644 L~~L~~LdL~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~ 720 (965)
+++|++|+|++|. +..+|. .+..+++|++|++++|.. ..+| ..+.++++|+.|++..+.... .....+..+++|+
T Consensus 111 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 188 (440)
T 3zyj_A 111 LANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188 (440)
T ss_dssp CSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC
T ss_pred CccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcc-cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC
Confidence 9999999999998 777776 589999999999999954 4454 468889999999887643222 1111222222222
Q ss_pred cCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeec
Q 002115 721 LLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYR 800 (965)
Q Consensus 721 ~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 800 (965)
.|...++ .+..++ .+..+++|+.|+|++|.+++.. +..+..+++|+.|+|++|.
T Consensus 189 ~L~L~~n-~l~~~~--------~~~~l~~L~~L~Ls~N~l~~~~-----------------~~~~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 189 YLNLAMC-NLREIP--------NLTPLIKLDELDLSGNHLSAIR-----------------PGSFQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp EEECTTS-CCSSCC--------CCTTCSSCCEEECTTSCCCEEC-----------------TTTTTTCTTCCEEECTTCC
T ss_pred eecCCCC-cCcccc--------ccCCCcccCEEECCCCccCccC-----------------hhhhccCccCCEEECCCCc
Confidence 2221111 111111 2344455555555555332211 1233444555555555555
Q ss_pred CCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCC
Q 002115 801 GRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGV 848 (965)
Q Consensus 801 ~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~ 848 (965)
+.. +++..|..+++|+.|+|++|.+....+. +..+++|+.|+|++|
T Consensus 243 l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 243 IQV--IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CCE--ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred eeE--EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 444 3224444555555555555544432222 445555555555543
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=3.1e-17 Score=187.79 Aligned_cols=242 Identities=21% Similarity=0.262 Sum_probs=141.1
Q ss_pred cceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCcccc-chhhhccCCCcEEeccCccccccc-CccccCCCC
Q 002115 593 LRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKL-PETLCELYNLEHLDISYCRNLREL-PQGIGKLRK 670 (965)
Q Consensus 593 Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~LdL~~~~~l~~l-P~~i~~L~~ 670 (965)
.+.++.+ +..+..+|..+. .+|++|+|++|. +..+ |..|.++++|++|+|++|. +..+ |..+.++++
T Consensus 56 ~~~v~c~-------~~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~ 124 (452)
T 3zyi_A 56 FSKVVCT-------RRGLSEVPQGIP--SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLAS 124 (452)
T ss_dssp SCEEECC-------SSCCSSCCSCCC--TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTT
T ss_pred CcEEEEC-------CCCcCccCCCCC--CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCccc
Confidence 4566766 445566776544 688999999998 5555 5678889999999999888 5544 466888899
Q ss_pred ccEeecCCCccccccccc-CCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCC
Q 002115 671 LMYLENDGTYSLRYLPVG-IGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKN 749 (965)
Q Consensus 671 L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~ 749 (965)
|++|++++|. +..+|.. ++.+++|+.|++..+.... ++. ..+..+++
T Consensus 125 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------------------------~~~------~~~~~l~~ 172 (452)
T 3zyi_A 125 LNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIES-------------------------IPS------YAFNRVPS 172 (452)
T ss_dssp CCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCE-------------------------ECT------TTTTTCTT
T ss_pred CCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcce-------------------------eCH------hHHhcCCc
Confidence 9999998884 4444433 5666666666554433221 000 12233444
Q ss_pred CCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCC
Q 002115 750 LSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCE 829 (965)
Q Consensus 750 L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~ 829 (965)
|+.|+++ +|..... ++...+..+++|+.|+|++|.+.
T Consensus 173 L~~L~l~-----------------------------------------~~~~l~~-i~~~~~~~l~~L~~L~L~~n~l~- 209 (452)
T 3zyi_A 173 LMRLDLG-----------------------------------------ELKKLEY-ISEGAFEGLFNLKYLNLGMCNIK- 209 (452)
T ss_dssp CCEEECC-----------------------------------------CCTTCCE-ECTTTTTTCTTCCEEECTTSCCS-
T ss_pred ccEEeCC-----------------------------------------CCCCccc-cChhhccCCCCCCEEECCCCccc-
Confidence 5555544 4322221 22234555666666666666443
Q ss_pred CCCCCCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccccccccccccccccCcccccccccccCcccceE
Q 002115 830 HLPPLGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSL 909 (965)
Q Consensus 830 ~lp~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L 909 (965)
.+|.+..+++|+.|+|++|. ++.+.... +..+++|+.|+++++. +....+..+..+++|+.|
T Consensus 210 ~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 210 DMPNLTPLVGLEELEMSGNH-FPEIRPGS-----------FHGLSSLKKLWVMNSQ------VSLIERNAFDGLASLVEL 271 (452)
T ss_dssp SCCCCTTCTTCCEEECTTSC-CSEECGGG-----------GTTCTTCCEEECTTSC------CCEECTTTTTTCTTCCEE
T ss_pred ccccccccccccEEECcCCc-CcccCccc-----------ccCccCCCEEEeCCCc------CceECHHHhcCCCCCCEE
Confidence 34556666666666666644 22221111 1245666666655542 222223445567777777
Q ss_pred eeccCccCcCCC-cCCCCCCCCCeEeEcCCc
Q 002115 910 SIRRCPKLKALP-DRLLQKTTLQALTIGECP 939 (965)
Q Consensus 910 ~L~~c~~l~~lp-~~l~~l~~L~~L~l~~c~ 939 (965)
+|++|. +..+| ..+..+++|+.|++++||
T Consensus 272 ~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 272 NLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 777775 44444 345667777777777776
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=1.5e-18 Score=199.75 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=36.8
Q ss_pred ccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCc
Q 002115 592 CLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKL 671 (965)
Q Consensus 592 ~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L 671 (965)
+|++|+|++|.++ ...|..++.+++|++|+|++|. +...+. ++.+++|++|+|++|. +..+|. .++|
T Consensus 35 ~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L 101 (487)
T 3oja_A 35 NVKELDLSGNPLS------QISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSI 101 (487)
T ss_dssp GCCEEECCSSCCC------CCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTC
T ss_pred CccEEEeeCCcCC------CCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCc
Confidence 5555555533332 1123445555555555555555 433333 5555555555555554 444432 2455
Q ss_pred cEeecCCC
Q 002115 672 MYLENDGT 679 (965)
Q Consensus 672 ~~L~l~~~ 679 (965)
++|++++|
T Consensus 102 ~~L~L~~N 109 (487)
T 3oja_A 102 ETLHAANN 109 (487)
T ss_dssp CEEECCSS
T ss_pred CEEECcCC
Confidence 55555555
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=7e-18 Score=180.42 Aligned_cols=63 Identities=21% Similarity=0.154 Sum_probs=32.9
Q ss_pred CCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCCC
Q 002115 785 LGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGVQ 849 (965)
Q Consensus 785 l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~~ 849 (965)
+..+++|+.|++++|.+.. .++.++..+++|+.|+|++|.+....+. ++.+++|++|+|++|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAH--VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTTCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred hcCccccCEEECCCCcccc--cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 3344555555555555544 2224555556666666666654443222 5556666666665543
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=4.5e-17 Score=190.99 Aligned_cols=262 Identities=17% Similarity=0.126 Sum_probs=187.7
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhc
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIEN 619 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~ 619 (965)
..++.+.+.++++..+|..++ ++|+.|.+.++... . +|. .+++|++|+|++|. +..+|. .
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~---~-lp~---~l~~L~~L~Ls~N~-------l~~lp~---~ 99 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLT---S-LPA---LPPELRTLEVSGNQ-------LTSLPV---L 99 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCS---C-CCC---CCTTCCEEEECSCC-------CSCCCC---C
T ss_pred CCCcEEEecCCCcCccChhhC---CCCcEEEecCCCCC---C-CCC---cCCCCCEEEcCCCc-------CCcCCC---C
Confidence 357889999998887766544 79999999998743 3 343 57899999999555 455665 7
Q ss_pred cCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccC
Q 002115 620 LLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVK 699 (965)
Q Consensus 620 L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 699 (965)
+++|++|+|++|. +..+|. .+.+|++|++++|. +..+|.. +++|++|++++| .+..+|..+ .+|+.|+
T Consensus 100 l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~~---~~L~~L~ 167 (622)
T 3g06_A 100 PPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPALP---SELCKLW 167 (622)
T ss_dssp CTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCCCC---TTCCEEE
T ss_pred CCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCCcc---CCCCEEE
Confidence 8999999999999 888987 67899999999998 8888875 489999999999 555676543 4566665
Q ss_pred ceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhH
Q 002115 700 EFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDE 779 (965)
Q Consensus 700 l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~ 779 (965)
+..+.+.. ++ ..+++|+.|++++|.+++..
T Consensus 168 L~~N~l~~-------------------------l~----------~~~~~L~~L~Ls~N~l~~l~--------------- 197 (622)
T 3g06_A 168 AYNNQLTS-------------------------LP----------MLPSGLQELSVSDNQLASLP--------------- 197 (622)
T ss_dssp CCSSCCSC-------------------------CC----------CCCTTCCEEECCSSCCSCCC---------------
T ss_pred CCCCCCCC-------------------------Cc----------ccCCCCcEEECCCCCCCCCC---------------
Confidence 55443322 11 12357888888887654311
Q ss_pred HhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCCCCceEeCcccc
Q 002115 780 RLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGVQSVKRVGNEFL 859 (965)
Q Consensus 780 ~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~~l~~~~~~~~ 859 (965)
..+++|+.|++++|.+.. +| . .+++|+.|+|++|.+.. +| ..+++|++|+|++|. ++.++.
T Consensus 198 ------~~~~~L~~L~L~~N~l~~--l~-~---~~~~L~~L~Ls~N~L~~-lp--~~l~~L~~L~Ls~N~-L~~lp~--- 258 (622)
T 3g06_A 198 ------TLPSELYKLWAYNNRLTS--LP-A---LPSGLKELIVSGNRLTS-LP--VLPSELKELMVSGNR-LTSLPM--- 258 (622)
T ss_dssp ------CCCTTCCEEECCSSCCSS--CC-C---CCTTCCEEECCSSCCSC-CC--CCCTTCCEEECCSSC-CSCCCC---
T ss_pred ------CccchhhEEECcCCcccc--cC-C---CCCCCCEEEccCCccCc-CC--CCCCcCcEEECCCCC-CCcCCc---
Confidence 124678888888888776 66 2 35788888888886654 55 567888888888754 222211
Q ss_pred CCCCCCCCccccCCcccccccccccccccccCcccccccccccCcccceEeeccCccCcCCC
Q 002115 860 GVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALP 921 (965)
Q Consensus 860 ~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp 921 (965)
.+++|+.|++++|. ++ .+|..+..+++|+.|+|++|+.....|
T Consensus 259 ------------~~~~L~~L~Ls~N~-L~------~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 259 ------------LPSGLLSLSVYRNQ-LT------RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp ------------CCTTCCEEECCSSC-CC------SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred ------------ccccCcEEeCCCCC-CC------cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 46788888877763 33 345667788889999998887654433
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=2.3e-18 Score=186.65 Aligned_cols=64 Identities=13% Similarity=-0.040 Sum_probs=41.8
Q ss_pred CCCCCCceEEEeeecCCCC-CCChhhHhhccCCcEEEEecCCCCCCCC--CCCCCCCcceeeecCCC
Q 002115 786 GPPPNLKELRIYQYRGRRN-VVPKIWITSLTNLRVLSLFECRNCEHLP--PLGKLPSIEVLEIYGVQ 849 (965)
Q Consensus 786 ~~~~~L~~L~L~~~~~~~~-~~p~~~~~~l~~L~~L~L~~~~~~~~lp--~l~~L~~L~~L~L~~~~ 849 (965)
..+++|+.|++++|.+... ..+...+..+++|+.|+|++|.+....| .+..+++|++|+|++|.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 5566777777777776530 0221334567888888888887776553 36667778888777643
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=6.2e-18 Score=180.83 Aligned_cols=156 Identities=19% Similarity=0.160 Sum_probs=95.0
Q ss_pred cCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEec
Q 002115 745 EKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFE 824 (965)
Q Consensus 745 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~ 824 (965)
..+++|+.|++++|.++... ...+..+++|+.|++++|.+.. +|+.++..+++|+.|+|++
T Consensus 126 ~~l~~L~~L~l~~n~l~~~~-----------------~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 126 RGLAALQYLYLQDNALQALP-----------------DDTFRDLGNLTHLFLHGNRISS--VPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp TTCTTCCEEECCSSCCCCCC-----------------TTTTTTCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCS
T ss_pred hCCcCCCEEECCCCcccccC-----------------HhHhccCCCccEEECCCCcccc--cCHHHhcCccccCEEECCC
Confidence 34456666666666543321 1235567788888888887776 5545688899999999999
Q ss_pred CCCCCCCCC-CCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccccccccccccccccCcccccccccccC
Q 002115 825 CRNCEHLPP-LGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIM 903 (965)
Q Consensus 825 ~~~~~~lp~-l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~ 903 (965)
|.+....|. ++++++|+.|++++|. ++.++... +..+++|+.|++++++ +..-. .....+
T Consensus 187 n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-----------~~~l~~L~~L~l~~N~-~~c~~------~~~~~~ 247 (285)
T 1ozn_A 187 NRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEA-----------LAPLRALQYLRLNDNP-WVCDC------RARPLW 247 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHH-----------HTTCTTCCEEECCSSC-EECSG------GGHHHH
T ss_pred CcccccCHhHccCcccccEeeCCCCc-CCcCCHHH-----------cccCcccCEEeccCCC-ccCCC------CcHHHH
Confidence 988776555 8889999999998864 22222111 2357888888887765 21100 000012
Q ss_pred cccceEeeccCccCcCCCcCCCC--CCCCCeEeEcCC
Q 002115 904 PRLSSLSIRRCPKLKALPDRLLQ--KTTLQALTIGEC 938 (965)
Q Consensus 904 ~~L~~L~L~~c~~l~~lp~~l~~--l~~L~~L~l~~c 938 (965)
..|+.+.+..+......|..+.. +..++..++.+|
T Consensus 248 ~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 248 AWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred HHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 34555555555444455654432 445555556665
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=3.3e-18 Score=185.36 Aligned_cols=205 Identities=20% Similarity=0.189 Sum_probs=97.8
Q ss_pred ccCCCcEEEeCCccCccccchhh--hccCCCcEEeccCcccccccCccccCC-----CCccEeecCCCcccccccccCCC
Q 002115 619 NLLHLKYLNLAHQREIEKLPETL--CELYNLEHLDISYCRNLRELPQGIGKL-----RKLMYLENDGTYSLRYLPVGIGE 691 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~~lp~~i--~~L~~L~~LdL~~~~~l~~lP~~i~~L-----~~L~~L~l~~~~~~~~~p~~i~~ 691 (965)
++++|++|+|++|.+.+.+|..+ ..+++|++|++++|. +..+|..+..+ ++|++|++++|......|..+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 45556666666655223455543 555566666666555 44445444444 55666666555333333345555
Q ss_pred cccccccCceEecCccCCCCCcccc--ccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCccccc
Q 002115 692 LIRLRIVKEFVVGGGYDRACSLGSL--KKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAG 769 (965)
Q Consensus 692 l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~ 769 (965)
+++|+.|++..+......+ ....+ ..+++|+.+.+.... +..........+..+++|+.|++++|.+++..+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---- 245 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERG-LISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAG---- 245 (312)
T ss_dssp CSSCCEEECCSCTTCHHHH-HHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC----
T ss_pred CCCCCEEECCCCCcCcchH-HHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccc----
Confidence 5556655555443221000 00000 111222222211110 111111111223455667777776665543221
Q ss_pred CCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCC
Q 002115 770 RRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGV 848 (965)
Q Consensus 770 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~ 848 (965)
...+..+++|+.|++++|.+.. +| .++. ++|+.|+|++|.+... |.++.+++|++|+|+++
T Consensus 246 ------------~~~~~~l~~L~~L~Ls~N~l~~--ip-~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 246 ------------APSCDWPSQLNSLNLSFTGLKQ--VP-KGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGN 306 (312)
T ss_dssp ------------CSCCCCCTTCCEEECTTSCCSS--CC-SSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTC
T ss_pred ------------hhhhhhcCCCCEEECCCCccCh--hh-hhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCC
Confidence 0122334667777777766664 55 3332 6667777776655443 55666666666666664
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=3.3e-18 Score=203.84 Aligned_cols=367 Identities=15% Similarity=0.092 Sum_probs=183.9
Q ss_pred ceEEEEEEEeCCCccchh-hHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhh
Q 002115 540 KKVLHLMLNLDGRHLVSI-SIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIE 618 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~ 618 (965)
..+++|.+..+.+..... .+...+++|++|.+.++..- ....++..+.++++|++|+|++|.++ +.....++....
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~i~--~~~~~~l~~~~~ 181 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF-STDGLAAIAATCRNLKELDLRESDVD--DVSGHWLSHFPD 181 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE-EHHHHHHHHHHCTTCCEEECTTCEEE--CCCGGGGGGSCT
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC-CHHHHHHHHHhCCCCCEEeCcCCccC--CcchHHHHHHhh
Confidence 467777887766543222 22235788888888876311 11124555668888888888877665 433444554455
Q ss_pred ccCCCcEEEeCCcc-Cc--cccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcc------cccccccC
Q 002115 619 NLLHLKYLNLAHQR-EI--EKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYS------LRYLPVGI 689 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~-~i--~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~------~~~~p~~i 689 (965)
.+++|++|++++|. .+ ..++..+.++++|++|++++|..+..+|..+..+++|++|+++.+.. ...++..+
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 67788888888875 11 12333345678888888888855666777777788888887654421 11223334
Q ss_pred CCccccccc------------------------CceEecCccCCCCCcc-ccccCCcCCcceeeccCCCCCHhHHHHhhc
Q 002115 690 GELIRLRIV------------------------KEFVVGGGYDRACSLG-SLKKLNLLRYCRIHGLGDVSDAGEARRAEL 744 (965)
Q Consensus 690 ~~l~~L~~L------------------------~l~~~~~~~~~~~~~~-~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l 744 (965)
.++++|+.| ++..+.... ..+. -+..+++|+.+.+... + .........
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~---~~l~~~~~~~~~L~~L~l~~~--~--~~~~l~~l~ 334 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS---YDLVKLLCQCPKLQRLWVLDY--I--EDAGLEVLA 334 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH---HHHHHHHTTCTTCCEEEEEGG--G--HHHHHHHHH
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH---HHHHHHHhcCCCcCEEeCcCc--c--CHHHHHHHH
Confidence 444444444 333222111 0000 0122333333333321 0 011111122
Q ss_pred cCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEe-
Q 002115 745 EKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLF- 823 (965)
Q Consensus 745 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~- 823 (965)
..+++|++|++..+.-.+. ...... ....+......+++|+.|.+..+.+....+. .....+++|+.|+|+
T Consensus 335 ~~~~~L~~L~L~~~~~~g~-----~~~~~l--~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~-~l~~~~~~L~~L~L~~ 406 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVM-----EPNVAL--TEQGLVSVSMGCPKLESVLYFCRQMTNAALI-TIARNRPNMTRFRLCI 406 (594)
T ss_dssp HHCTTCCEEEEECSCTTCS-----SCSSCC--CHHHHHHHHHHCTTCCEEEEEESCCCHHHHH-HHHHHCTTCCEEEEEE
T ss_pred HhCCCCCEEEEecCccccc-----ccCCCC--CHHHHHHHHHhchhHHHHHHhcCCcCHHHHH-HHHhhCCCcceeEeec
Confidence 2344555555533210000 000000 0111111111246677775555544331111 112246777777777
Q ss_pred ----cCCCCCCCCC-------CCCCCCcceeeecCCCCceEeCccccCCCCCCCCccccCCcccccccccccccccccCc
Q 002115 824 ----ECRNCEHLPP-------LGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDF 892 (965)
Q Consensus 824 ----~~~~~~~lp~-------l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~ 892 (965)
+|......|. +..+++|+.|+|++ .+...+ +... ...+++|+.|++++|. +...
T Consensus 407 ~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~--~~~l--------~~~~~~L~~L~L~~~~-i~~~-- 471 (594)
T 2p1m_B 407 IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKV--FEYI--------GTYAKKMEMLSVAFAG-DSDL-- 471 (594)
T ss_dssp SSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHH--HHHH--------HHHCTTCCEEEEESCC-SSHH--
T ss_pred ccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHH--HHHH--------HHhchhccEeeccCCC-CcHH--
Confidence 2222222221 34566777777754 111100 0000 0136778888877664 2211
Q ss_pred ccccccccccCcccceEeeccCccCcC-CCcCCCCCCCCCeEeEcCCcch
Q 002115 893 GTAINGEIMIMPRLSSLSIRRCPKLKA-LPDRLLQKTTLQALTIGECPIL 941 (965)
Q Consensus 893 ~~~~~~~~~~~~~L~~L~L~~c~~l~~-lp~~l~~l~~L~~L~l~~c~~l 941 (965)
.++.....+++|+.|+|++|+.... ++..+..+++|++|++++|+..
T Consensus 472 --~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 472 --GMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp --HHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred --HHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 1111124689999999999986322 1224455789999999999863
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=1.1e-16 Score=183.95 Aligned_cols=215 Identities=16% Similarity=0.097 Sum_probs=167.4
Q ss_pred cCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhh
Q 002115 563 VKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLC 642 (965)
Q Consensus 563 ~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~ 642 (965)
+++|+.|.+.++. +....|..|..+++|++|+|++|.++ ..++ ++.+++|++|+|++|. ++.+|.
T Consensus 33 ~~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~N~l~-------~~~~-l~~l~~L~~L~Ls~N~-l~~l~~--- 97 (487)
T 3oja_A 33 AWNVKELDLSGNP---LSQISAADLAPFTKLELLNLSSNVLY-------ETLD-LESLSTLRTLDLNNNY-VQELLV--- 97 (487)
T ss_dssp GGGCCEEECCSSC---CCCCCGGGGTTCTTCCEEECTTSCCE-------EEEE-CTTCTTCCEEECCSSE-EEEEEE---
T ss_pred CCCccEEEeeCCc---CCCCCHHHHhCCCCCCEEEeeCCCCC-------CCcc-cccCCCCCEEEecCCc-CCCCCC---
Confidence 4489999999987 44556778999999999999976654 2332 8899999999999999 887774
Q ss_pred ccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcC
Q 002115 643 ELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLL 722 (965)
Q Consensus 643 ~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 722 (965)
.++|++|++++|. +..+|.. .+++|++|++++|......|..++.+++|+.|++..+......+
T Consensus 98 -~~~L~~L~L~~N~-l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------ 161 (487)
T 3oja_A 98 -GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF------------ 161 (487)
T ss_dssp -CTTCCEEECCSSC-CCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG------------
T ss_pred -CCCcCEEECcCCc-CCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh------------
Confidence 3899999999998 6666543 57899999999996666667788889999999887655433100
Q ss_pred CcceeeccCCCCCHhHHHHhhc-cCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecC
Q 002115 723 RYCRIHGLGDVSDAGEARRAEL-EKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRG 801 (965)
Q Consensus 723 ~~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 801 (965)
..+ ..+++|+.|+|++|.+++. .....+++|+.|+|++|.+
T Consensus 162 -------------------~~l~~~l~~L~~L~Ls~N~l~~~-------------------~~~~~l~~L~~L~Ls~N~l 203 (487)
T 3oja_A 162 -------------------AELAASSDTLEHLNLQYNFIYDV-------------------KGQVVFAKLKTLDLSSNKL 203 (487)
T ss_dssp -------------------GGGGGGTTTCCEEECTTSCCCEE-------------------ECCCCCTTCCEEECCSSCC
T ss_pred -------------------HHHhhhCCcccEEecCCCccccc-------------------cccccCCCCCEEECCCCCC
Confidence 122 2467888999988865432 2334578999999999998
Q ss_pred CCCCCChhhHhhccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCCC
Q 002115 802 RRNVVPKIWITSLTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGVQ 849 (965)
Q Consensus 802 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~ 849 (965)
.. +| ..+..+++|+.|+|++|.+....+.++.+++|+.|++++|+
T Consensus 204 ~~--~~-~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 204 AF--MG-PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CE--EC-GGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred CC--CC-HhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 87 77 45788999999999999877644448899999999999866
No 76
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.65 E-value=2.7e-15 Score=169.74 Aligned_cols=299 Identities=14% Similarity=0.048 Sum_probs=183.3
Q ss_pred CCccccchHHHHHHHHHH-hcCCCCCCCCcEEEEE--EecCCChHHHHHHHHHcccccccc-----cc-ceEEEEcCCCC
Q 002115 177 ESEIFGREEEKNELVNRL-LCESSKEQKGPCIISL--VGMGGIGKTTLAQFAYNNDGVKRN-----FE-KRIWVCVSEPF 247 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L-~~~~~~~~~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~~~-----F~-~~~wv~vs~~~ 247 (965)
+..++||+++++.+.+++ .............+.| +|++|+||||||+.+++. .... |. ..+|+.+....
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCCC
Confidence 467999999999999988 4321100023456667 999999999999999986 3221 22 35688877778
Q ss_pred CHHHHHHHHHHHhcCCCCC-CCCHHHHHHHHHHHhC--CceEEEEEeCCCcchh------hchHhHHhhhcCC---C--C
Q 002115 248 DEFRIARAIIESLTGSASN-FGEFQSLMQHIQECVE--GKKFLLVLDDLWNEVY------YKWEPFYKCLKNG---L--H 313 (965)
Q Consensus 248 ~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~------~~~~~l~~~l~~~---~--~ 313 (965)
+...++..++.+++...+. ..+...+...+.+.+. +++++|||||+|.-.. ..+..+...+... + .
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 178 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVN 178 (412)
T ss_dssp SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCC
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCc
Confidence 8999999999998754322 2345566666666664 7899999999976321 2333333333321 2 3
Q ss_pred CcEEEEeecchHHHhhc--------CC-cceEeCCCCChHHHHHHHHHHh---ccCCCccchhHHHHHHHHHHHHcC---
Q 002115 314 ESKILITTRKEIVARCM--------RS-TNVIYVNVLSEIECWSVFEQLA---FFGRSMEECEKLENMGRQIVRKCK--- 378 (965)
Q Consensus 314 gs~ilvTtR~~~v~~~~--------~~-~~~~~l~~L~~~~~~~lf~~~~---~~~~~~~~~~~l~~~~~~i~~~c~--- 378 (965)
...||+||+...+...+ .. ...+.+.+++.++.+++|...+ +... ... .+....|++.|+
T Consensus 179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~---~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWE---PRHLELISDVYGEDK 253 (412)
T ss_dssp BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCC---HHHHHHHHHHHCGGG
T ss_pred eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCC---hHHHHHHHHHHHHhc
Confidence 45588888755432111 11 2239999999999999997654 2211 111 345778999999
Q ss_pred ---CChHhHHHHHHhhc------CC--CCHHHHHHHHhhhhhhhhhhhhhhhhHHHHhhcCCcHhHHHHHhHhcccC--C
Q 002115 379 ---GLPLAAKTIASLLQ------SR--NTEKEWQNILESEIWELEEVERGLLAPLLLSYNELPSKIKQCFTYCAIFP--K 445 (965)
Q Consensus 379 ---GlPlai~~~~~~l~------~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~lk~cfl~~~~fp--~ 445 (965)
|.|..+..++.... .. -+.+.+......... ...+.-++..||++.+.++..++.+. .
T Consensus 254 ~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~ 324 (412)
T 1w5s_A 254 GGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGG 324 (412)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTT
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcC
Confidence 99976655543221 11 133333333221100 12344467889999999999888754 2
Q ss_pred CceecHHHHHHHHHhCC--ccccCCCCcHHHHHHHHHHHHHhCCCccccc
Q 002115 446 DYQIQKKELINLWMAQG--YLSKKGTKEMEDIGEEYFNILASRSFFQDFR 493 (965)
Q Consensus 446 ~~~i~~~~li~~w~aeg--~i~~~~~~~~e~~~~~~l~~L~~~sl~~~~~ 493 (965)
+..++..++...+.... ... .. .........++++|+..+++....
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 325 MEWINAGLLRQRYEDASLTMYN-VK-PRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp CSSBCHHHHHHHHHHHHHHHSC-CC-CCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCccHHHHHHHHHHHHHhhcC-CC-CCCHHHHHHHHHHHHhCCCEEeec
Confidence 33555665555442110 000 01 112345678899999999998654
No 77
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.64 E-value=2.5e-14 Score=157.86 Aligned_cols=293 Identities=14% Similarity=0.119 Sum_probs=179.4
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCC------CH
Q 002115 176 DESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPF------DE 249 (965)
Q Consensus 176 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~ 249 (965)
.+..|+||+++++.+.+++... +++.|+|++|+|||||++++++.. . .+|+++.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCH
Confidence 4567999999999999988531 489999999999999999998762 1 6777765432 56
Q ss_pred HHHHHHHHHHhcC----------------CCC--CCCCHHHHHHHHHHHhCC-ceEEEEEeCCCcchh-------hchHh
Q 002115 250 FRIARAIIESLTG----------------SAS--NFGEFQSLMQHIQECVEG-KKFLLVLDDLWNEVY-------YKWEP 303 (965)
Q Consensus 250 ~~~~~~i~~~l~~----------------~~~--~~~~~~~l~~~l~~~l~~-kr~LlVlDdv~~~~~-------~~~~~ 303 (965)
..++..+.+.+.. ... ...+..++...+.+.... ++++||+||++..+. ..+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 6677777665532 000 123456666666665543 399999999976331 11222
Q ss_pred HHhhhcCCCCCcEEEEeecchHH-Hhh---------c-CC-cceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHH
Q 002115 304 FYKCLKNGLHESKILITTRKEIV-ARC---------M-RS-TNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGR 371 (965)
Q Consensus 304 l~~~l~~~~~gs~ilvTtR~~~v-~~~---------~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~ 371 (965)
+...+.. ..+.++|+|++...+ ... . +. ...+++.+|+.+|+.+++....-.... ... .+.+.
T Consensus 155 L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~~---~~~~~ 229 (350)
T 2qen_A 155 FAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DVP---ENEIE 229 (350)
T ss_dssp HHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHH
T ss_pred HHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHH
Confidence 3322222 246789999887643 221 1 11 247899999999999999875421111 111 23578
Q ss_pred HHHHHcCCChHhHHHHHHhhcCCCCHHHHHH-HHhhhhhhhhhhhhhhhhHH-HHhhcCCcHhHHHHHhHhcccCCCcee
Q 002115 372 QIVRKCKGLPLAAKTIASLLQSRNTEKEWQN-ILESEIWELEEVERGLLAPL-LLSYNELPSKIKQCFTYCAIFPKDYQI 449 (965)
Q Consensus 372 ~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~-~l~~~~~~~~~~~~~i~~~l-~~sy~~L~~~lk~cfl~~~~fp~~~~i 449 (965)
+|++.|+|+|+++..++..+....+...+.. +.+.. ...+...+ .+.+ + ++..+..+..+|. + .+
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~l~~-~-~~~~~~~l~~la~---g-~~ 296 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVA-------KGLIMGELEELRR-R-SPRYVDILRAIAL---G-YN 296 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------HHHHHHHHHHHHH-H-CHHHHHHHHHHHT---T-CC
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHH-------HHHHHHHHHHHHh-C-ChhHHHHHHHHHh---C-CC
Confidence 8999999999999999876532222222211 11110 00011111 1222 2 7888999999987 2 24
Q ss_pred cHHHHHHHHHhCCccccCCCCcHHHHHHHHHHHHHhCCCccccccCCCCCeeEEE-eChhHHHHHH
Q 002115 450 QKKELINLWMAQGYLSKKGTKEMEDIGEEYFNILASRSFFQDFRRYGLGENYVCK-MHDIVHDFAQ 514 (965)
Q Consensus 450 ~~~~li~~w~aeg~i~~~~~~~~e~~~~~~l~~L~~~sl~~~~~~~~~~~~~~~~-~Hdlv~~~a~ 514 (965)
+...+.....+.. .+. .......+++.|++.+++.... + .|+ .|++++++.+
T Consensus 297 ~~~~l~~~~~~~~-----~~~-~~~~~~~~l~~L~~~gli~~~~----~---~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 297 RWSLIRDYLAVKG-----TKI-PEPRLYALLENLKKMNWIVEED----N---TYKIADPVVATVLR 349 (350)
T ss_dssp SHHHHHHHHHHTT-----CCC-CHHHHHHHHHHHHHTTSEEEET----T---EEEESSHHHHHHHT
T ss_pred CHHHHHHHHHHHh-----CCC-CHHHHHHHHHHHHhCCCEEecC----C---EEEEecHHHHHHHc
Confidence 4455544432211 011 1345678999999999997642 1 244 4778887653
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=2.9e-17 Score=180.45 Aligned_cols=237 Identities=14% Similarity=0.133 Sum_probs=125.1
Q ss_pred CCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccc-cCccccCCCCccEeecCCCcccccccccCCCcccccccC
Q 002115 621 LHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRE-LPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVK 699 (965)
Q Consensus 621 ~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~-lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 699 (965)
.++++|++++|. +...+..+.++++|++|++++|..... +|..+..+++|++|++++|......|..++++++|+.|+
T Consensus 70 ~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCcc-ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 455555555555 333333344455555555555542112 444445555555555555533333344444444444444
Q ss_pred ceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEee-ccCCCCcccccCCCCChhhh
Q 002115 700 EFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFD-HLRDGDEEQAGRRDNEEDED 778 (965)
Q Consensus 700 l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~~~~~ 778 (965)
+..+.. +. .......+..+++|++|++++| .+++
T Consensus 149 L~~~~~---------------------------l~--~~~l~~~~~~~~~L~~L~l~~~~~l~~---------------- 183 (336)
T 2ast_B 149 LSGCSG---------------------------FS--EFALQTLLSSCSRLDELNLSWCFDFTE---------------- 183 (336)
T ss_dssp CTTCBS---------------------------CC--HHHHHHHHHHCTTCCEEECCCCTTCCH----------------
T ss_pred CCCCCC---------------------------CC--HHHHHHHHhcCCCCCEEcCCCCCCcCh----------------
Confidence 332210 00 0011223445567777777776 4321
Q ss_pred HHhhhcCCCCC-CCceEEEeeec--CCCCCCChhhHhhccCCcEEEEecCC-CCCC-CCCCCCCCCcceeeecCCCCceE
Q 002115 779 ERLLEALGPPP-NLKELRIYQYR--GRRNVVPKIWITSLTNLRVLSLFECR-NCEH-LPPLGKLPSIEVLEIYGVQSVKR 853 (965)
Q Consensus 779 ~~~~~~l~~~~-~L~~L~L~~~~--~~~~~~p~~~~~~l~~L~~L~L~~~~-~~~~-lp~l~~L~~L~~L~L~~~~~l~~ 853 (965)
..+...+..++ +|++|+|++|. .....+| ..+..+++|+.|+|++|. +... ++.++++++|++|+|++|..+.
T Consensus 184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~- 261 (336)
T 2ast_B 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII- 261 (336)
T ss_dssp HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH-HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC-
T ss_pred HHHHHHHHhcccCCCEEEeCCCcccCCHHHHH-HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC-
Confidence 11233344566 88888888874 3212244 566788889999998887 4433 4447888889999998876321
Q ss_pred eCccccCCCCCCCCccccCCcccccccccccccccccCcccccccccccC-cccceEeeccCccCcCCCcCCC
Q 002115 854 VGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIM-PRLSSLSIRRCPKLKALPDRLL 925 (965)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~-~~L~~L~L~~c~~l~~lp~~l~ 925 (965)
+..+. .+..+|+|+.|++++| +.... +..+ .+|+.|++++|......|..+.
T Consensus 262 -~~~~~---------~l~~~~~L~~L~l~~~--i~~~~--------~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 262 -PETLL---------ELGEIPTLKTLQVFGI--VPDGT--------LQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp -GGGGG---------GGGGCTTCCEEECTTS--SCTTC--------HHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred -HHHHH---------HHhcCCCCCEEeccCc--cCHHH--------HHHHHhhCcceEEecccCccccCCccc
Confidence 11110 1235788888888876 22211 1122 3466777877775555665544
No 79
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.63 E-value=2.7e-16 Score=139.24 Aligned_cols=80 Identities=25% Similarity=0.399 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhc--ccCcHHHHHHHHHHHHhhhchhhHHHHHHHH
Q 002115 10 LLQQLTAMAAAETKEQVKLVTGVGKEVKKLNSNLRAIQAVLHDAEKR--QVKEETVRLWLDQLRDACYDIEDVLGEWNTA 87 (965)
Q Consensus 10 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~l~~~~yd~ed~ld~~~~~ 87 (965)
+++.+++||.+++.+|+.++.|+++++++|+++|.+|++||.||+.+ +..+++++.|+++||+++||+|||||+|.++
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677999999999999999999999999999999999999999987 5689999999999999999999999999998
Q ss_pred HH
Q 002115 88 RL 89 (965)
Q Consensus 88 ~~ 89 (965)
..
T Consensus 82 ~~ 83 (115)
T 3qfl_A 82 VD 83 (115)
T ss_dssp HH
T ss_pred hc
Confidence 73
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=1.5e-15 Score=162.07 Aligned_cols=175 Identities=20% Similarity=0.144 Sum_probs=97.2
Q ss_pred CCCcEEEeCCccCcccc-chhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccC
Q 002115 621 LHLKYLNLAHQREIEKL-PETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVK 699 (965)
Q Consensus 621 ~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 699 (965)
.+|++|+|++|. +..+ |..+.++++|++|++++|. +..+|.. ..+++|++|++++| .+..+|..+..+++|+.|+
T Consensus 31 ~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEE
T ss_pred CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEE
Confidence 345555555555 3332 2345555555555555554 4444332 44555555555554 3334444444444444444
Q ss_pred ceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhH
Q 002115 700 EFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDE 779 (965)
Q Consensus 700 l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~ 779 (965)
+..+.+....+ ..+..+++|+.|+|++|.++...
T Consensus 107 l~~N~l~~l~~-------------------------------~~~~~l~~L~~L~L~~N~l~~~~--------------- 140 (290)
T 1p9a_G 107 VSFNRLTSLPL-------------------------------GALRGLGELQELYLKGNELKTLP--------------- 140 (290)
T ss_dssp CCSSCCCCCCS-------------------------------STTTTCTTCCEEECTTSCCCCCC---------------
T ss_pred CCCCcCcccCH-------------------------------HHHcCCCCCCEEECCCCCCCccC---------------
Confidence 43332221000 12334456666666666544321
Q ss_pred HhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCCC
Q 002115 780 RLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGVQ 849 (965)
Q Consensus 780 ~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~ 849 (965)
...+..+++|+.|+|++|.+.. +|+..+..+++|+.|+|++|.+....+.+..+++|+.|+|.+++
T Consensus 141 --~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 141 --PGLLTPTPKLEKLSLANNNLTE--LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp --TTTTTTCTTCCEEECTTSCCSC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred --hhhcccccCCCEEECCCCcCCc--cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 1234566778888888888776 66566677888888888888776433347777888888888755
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=8.3e-16 Score=165.81 Aligned_cols=191 Identities=18% Similarity=0.222 Sum_probs=107.8
Q ss_pred hcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccC
Q 002115 588 DKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGK 667 (965)
Q Consensus 588 ~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~ 667 (965)
..+++|+.|++++|. +..+| .+..+++|++|+|++|. +..+|. +.++++|++|++++|. +..+| .+..
T Consensus 38 ~~l~~L~~L~l~~~~-------i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~ 105 (308)
T 1h6u_A 38 ADLDGITTLSAFGTG-------VTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAG 105 (308)
T ss_dssp HHHHTCCEEECTTSC-------CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTT
T ss_pred HHcCCcCEEEeeCCC-------ccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch-hhcC
Confidence 344555566665332 23333 35555666666666665 555555 5566666666666655 44443 4555
Q ss_pred CCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCC
Q 002115 668 LRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKK 747 (965)
Q Consensus 668 L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~ 747 (965)
+++|++|++++| .+..+|. +..+++|+.|++..+.... + ..+..+
T Consensus 106 l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~-------------------------~--------~~l~~l 150 (308)
T 1h6u_A 106 LQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQITN-------------------------I--------SPLAGL 150 (308)
T ss_dssp CTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSCCCC-------------------------C--------GGGGGC
T ss_pred CCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCccCc-------------------------C--------ccccCC
Confidence 666666666655 2333332 5555555555444332221 0 012344
Q ss_pred CCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCC
Q 002115 748 KNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRN 827 (965)
Q Consensus 748 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~ 827 (965)
++|+.|+++.|.+++. ..+..+++|+.|++++|.+.. ++ . +..+++|+.|+|++|.+
T Consensus 151 ~~L~~L~l~~n~l~~~-------------------~~l~~l~~L~~L~l~~n~l~~--~~-~-l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 151 TNLQYLSIGNAQVSDL-------------------TPLANLSKLTTLKADDNKISD--IS-P-LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp TTCCEEECCSSCCCCC-------------------GGGTTCTTCCEEECCSSCCCC--CG-G-GGGCTTCCEEECTTSCC
T ss_pred CCccEEEccCCcCCCC-------------------hhhcCCCCCCEEECCCCccCc--Ch-h-hcCCCCCCEEEccCCcc
Confidence 5666677766654321 114566777778877777766 55 2 66778888888888866
Q ss_pred CCCCCCCCCCCCcceeeecCCC
Q 002115 828 CEHLPPLGKLPSIEVLEIYGVQ 849 (965)
Q Consensus 828 ~~~lp~l~~L~~L~~L~L~~~~ 849 (965)
.. ++++..+++|+.|++++|+
T Consensus 208 ~~-~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 208 SD-VSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CB-CGGGTTCTTCCEEEEEEEE
T ss_pred Cc-cccccCCCCCCEEEccCCe
Confidence 54 3347778888888887754
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.62 E-value=2.9e-15 Score=158.46 Aligned_cols=176 Identities=23% Similarity=0.302 Sum_probs=98.4
Q ss_pred CCCcEEEeCCccCccccch-hhhccCCCcEEeccCcccccccCcc-ccCCCCccEeecCCCcccccccc-cCCCcccccc
Q 002115 621 LHLKYLNLAHQREIEKLPE-TLCELYNLEHLDISYCRNLRELPQG-IGKLRKLMYLENDGTYSLRYLPV-GIGELIRLRI 697 (965)
Q Consensus 621 ~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~LdL~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~ 697 (965)
.+|++|+|++|. +..+|. .+.++++|++|++++|. +..+|.. +..+++|++|++++|. +..+|. .+..+++|+.
T Consensus 37 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCE
T ss_pred CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCE
Confidence 345555555555 444443 45555555555555554 4444443 2445555555555552 222332 2344444444
Q ss_pred cCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhh
Q 002115 698 VKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDE 777 (965)
Q Consensus 698 L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~ 777 (965)
|++..+.... ++. ..+..+++|+.|+|++|.++...+
T Consensus 114 L~l~~n~l~~-------------------------~~~------~~~~~l~~L~~L~Ls~n~l~~~~~------------ 150 (270)
T 2o6q_A 114 LRLDRNQLKS-------------------------LPP------RVFDSLTKLTYLSLGYNELQSLPK------------ 150 (270)
T ss_dssp EECCSSCCCC-------------------------CCT------TTTTTCTTCCEEECCSSCCCCCCT------------
T ss_pred EECCCCccCe-------------------------eCH------HHhCcCcCCCEEECCCCcCCccCH------------
Confidence 4443322211 000 123445567777777765543211
Q ss_pred hHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCCC
Q 002115 778 DERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGVQ 849 (965)
Q Consensus 778 ~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~~ 849 (965)
..+..+++|+.|+|++|.+.. +++..+..+++|+.|+|++|.+....+. ++.+++|+.|+|++++
T Consensus 151 -----~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 151 -----GVFDKLTSLKELRLYNNQLKR--VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp -----TTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -----hHccCCcccceeEecCCcCcE--eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 234566788888888887766 5545677788888888888876654443 7788888888888754
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=3.2e-15 Score=158.28 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=39.4
Q ss_pred CCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCC
Q 002115 785 LGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGV 848 (965)
Q Consensus 785 l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~ 848 (965)
+..+++|+.|++++|.+.. +++..+..+++|+.|+|++|.+....+. ++.+++|++|+|++|
T Consensus 153 ~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 153 FDKLTNLTELDLSYNQLQS--LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred hccCccCCEEECCCCCcCc--cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 3455666666666666654 4434556677777777777766654444 566777777777664
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.61 E-value=2.5e-17 Score=184.55 Aligned_cols=246 Identities=16% Similarity=0.083 Sum_probs=118.8
Q ss_pred hcCceeEEEecccccccc-cccchHHhhcCCccceEEcCccccccc-c---cchhhHHhhhhccCCCcEEEeCCccCccc
Q 002115 562 HVKRLRSLLVESYEYSWS-SEVLPQLFDKLTCLRALTLGVHSLRLC-E---NCIKEVRTNIENLLHLKYLNLAHQREIEK 636 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~-~~~l~~~~~~l~~Lr~L~L~~n~l~~~-~---~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~ 636 (965)
.+++|++|.+.++..... ...++..|..+++|++|+|++|.+... + ..+..+...+..+++|++|+|++|. ++.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~ 108 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGP 108 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CCH
Confidence 556666666666542110 001223355666666666665432100 0 0122233344566666666666666 433
Q ss_pred -----cchhhhccCCCcEEeccCccccc----ccCccccCC---------CCccEeecCCCccc-cccc---ccCCCccc
Q 002115 637 -----LPETLCELYNLEHLDISYCRNLR----ELPQGIGKL---------RKLMYLENDGTYSL-RYLP---VGIGELIR 694 (965)
Q Consensus 637 -----lp~~i~~L~~L~~LdL~~~~~l~----~lP~~i~~L---------~~L~~L~l~~~~~~-~~~p---~~i~~l~~ 694 (965)
+|..+.++++|++|+|++|.... .++..+..+ ++|++|++++|... ..+| ..+..+++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 56666666666666666666211 122223333 56666666666322 1222 22333444
Q ss_pred ccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHh-hccCCCCCCceEEEeeccCCCCcccccCCCC
Q 002115 695 LRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRA-ELEKKKNLSNLELHFDHLRDGDEEQAGRRDN 773 (965)
Q Consensus 695 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~ 773 (965)
|++|++..+.... ........ .+..+++|+.|+|++|.++..
T Consensus 189 L~~L~L~~n~l~~---------------------------~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~---------- 231 (386)
T 2ca6_A 189 LHTVKMVQNGIRP---------------------------EGIEHLLLEGLAYCQELKVLDLQDNTFTHL---------- 231 (386)
T ss_dssp CCEEECCSSCCCH---------------------------HHHHHHHHTTGGGCTTCCEEECCSSCCHHH----------
T ss_pred cCEEECcCCCCCH---------------------------hHHHHHHHHHhhcCCCccEEECcCCCCCcH----------
Confidence 4444433322210 00001111 455566667777766643110
Q ss_pred ChhhhHHhhhcCCCCCCCceEEEeeecCCCCC---CChhhHhh--ccCCcEEEEecCCCCC----CCCC-C-CCCCCcce
Q 002115 774 EEDEDERLLEALGPPPNLKELRIYQYRGRRNV---VPKIWITS--LTNLRVLSLFECRNCE----HLPP-L-GKLPSIEV 842 (965)
Q Consensus 774 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~---~p~~~~~~--l~~L~~L~L~~~~~~~----~lp~-l-~~L~~L~~ 842 (965)
....++..+..+++|+.|+|++|.+.... ++ .++.. +++|+.|+|++|.+.. .+|. + .++|+|++
T Consensus 232 ---g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~ 307 (386)
T 2ca6_A 232 ---GSSALAIALKSWPNLRELGLNDCLLSARGAAAVV-DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307 (386)
T ss_dssp ---HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH-HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred ---HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH-HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence 11334445556666777777666654310 12 23322 6667777777766554 2443 3 44666677
Q ss_pred eeecCCC
Q 002115 843 LEIYGVQ 849 (965)
Q Consensus 843 L~L~~~~ 849 (965)
|+|++|.
T Consensus 308 L~l~~N~ 314 (386)
T 2ca6_A 308 LELNGNR 314 (386)
T ss_dssp EECTTSB
T ss_pred EEccCCc
Confidence 7666643
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=4.9e-15 Score=158.04 Aligned_cols=151 Identities=23% Similarity=0.193 Sum_probs=90.9
Q ss_pred hhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCccccccc-CccccCCCCccEeecCCCcccccccccCCCcccc
Q 002115 617 IENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLREL-PQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRL 695 (965)
Q Consensus 617 i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 695 (965)
+.++++|++++++++. ++.+|..+. ++|++|++++|. +..+ |..+..+++|++|++++|. +..+|.. +.++
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~-- 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLP-- 77 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCT--
T ss_pred ccccCCccEEECCCCC-CCcCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCC--
Confidence 4567788888888887 778886554 678888888887 4444 5567888888888888772 3333221 2233
Q ss_pred cccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCCh
Q 002115 696 RIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEE 775 (965)
Q Consensus 696 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~ 775 (965)
+|+.|++++|.++.
T Consensus 78 -----------------------------------------------------~L~~L~Ls~N~l~~------------- 91 (290)
T 1p9a_G 78 -----------------------------------------------------VLGTLDLSHNQLQS------------- 91 (290)
T ss_dssp -----------------------------------------------------TCCEEECCSSCCSS-------------
T ss_pred -----------------------------------------------------cCCEEECCCCcCCc-------------
Confidence 44445555443321
Q ss_pred hhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCC
Q 002115 776 DEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGV 848 (965)
Q Consensus 776 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~ 848 (965)
++..+..+++|+.|++++|.+.. +|+..|..+++|+.|+|++|.+....+. +..+++|+.|+|++|
T Consensus 92 -----l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 92 -----LPLLGQTLPALTVLDVSFNRLTS--LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp -----CCCCTTTCTTCCEEECCSSCCCC--CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred -----CchhhccCCCCCEEECCCCcCcc--cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 11223345556666666666555 4435566666677777766655543333 556666666666553
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=1.1e-15 Score=162.32 Aligned_cols=130 Identities=20% Similarity=0.161 Sum_probs=78.3
Q ss_pred CceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHH-hhhhccCCCcEEEeCCccCccccc-hhh
Q 002115 564 KRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVR-TNIENLLHLKYLNLAHQREIEKLP-ETL 641 (965)
Q Consensus 564 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp-~~i~~L~~Lr~L~L~~~~~i~~lp-~~i 641 (965)
++|+.|.+.++. +....+..|.++++|++|+|++|.+ ..++ ..+.++++|++|+|++|. +..+| ..+
T Consensus 28 ~~l~~L~ls~n~---l~~~~~~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 96 (276)
T 2z62_A 28 FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCEI-------QTIEDGAYQSLSHLSTLILTGNP-IQSLALGAF 96 (276)
T ss_dssp TTCCEEECTTCC---CCEECTTTTTTCTTCSEEECTTCCC-------CEECTTTTTTCTTCCEEECTTCC-CCEECTTTT
T ss_pred CCccEEECCCCc---ccccCHhHhccccCCcEEECCCCcC-------CccCHHHccCCcCCCEEECCCCc-cCccChhhh
Confidence 356677776665 3333344566777777777774443 3332 356667777777777777 44444 456
Q ss_pred hccCCCcEEeccCcccccccCc-cccCCCCccEeecCCCcccc-cccccCCCcccccccCceEecC
Q 002115 642 CELYNLEHLDISYCRNLRELPQ-GIGKLRKLMYLENDGTYSLR-YLPVGIGELIRLRIVKEFVVGG 705 (965)
Q Consensus 642 ~~L~~L~~LdL~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~~ 705 (965)
.++++|++|++++|. +..++. .+..+++|++|++++|.... .+|..++++++|+.|++..+..
T Consensus 97 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred cCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 777777777777776 444443 46677777777777663322 2456666666666666655443
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=1.9e-14 Score=152.24 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=54.4
Q ss_pred CCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCc-cccCCCCccEeecCCCccccccccc-CCCccccccc
Q 002115 621 LHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQ-GIGKLRKLMYLENDGTYSLRYLPVG-IGELIRLRIV 698 (965)
Q Consensus 621 ~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L 698 (965)
..+++++++++. ++.+|..+. .+|++|++++|. +..+|. .+.++++|++|++++| .+..+|.. +.++++|++|
T Consensus 16 ~~~~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 16 NNKNSVDCSSKK-LTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTTEEECTTSC-CSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEE
T ss_pred CCCCEEEccCCC-CCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEE
Confidence 357889999988 888887554 689999999988 666664 6888999999999888 34444443 2445555555
Q ss_pred Cce
Q 002115 699 KEF 701 (965)
Q Consensus 699 ~l~ 701 (965)
++.
T Consensus 91 ~l~ 93 (270)
T 2o6q_A 91 WVT 93 (270)
T ss_dssp ECC
T ss_pred ECC
Confidence 443
No 88
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=1.5e-16 Score=189.48 Aligned_cols=337 Identities=15% Similarity=0.100 Sum_probs=183.3
Q ss_pred HhhhcCceeEEEecccccccccccchHHhh-cCCccceEEcCcc-cccccccchhhHHhhhhccCCCcEEEeCCccCccc
Q 002115 559 IWDHVKRLRSLLVESYEYSWSSEVLPQLFD-KLTCLRALTLGVH-SLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEK 636 (965)
Q Consensus 559 ~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~-~l~~Lr~L~L~~n-~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~ 636 (965)
....+++|+.|.+.++.. ....+..+. .+++|++|+|++| .++ -..++..+.++++|++|+|++|. ++.
T Consensus 100 l~~~~~~L~~L~L~~~~~---~~~~~~~l~~~~~~L~~L~L~~~~~~~-----~~~l~~~~~~~~~L~~L~L~~~~-i~~ 170 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRMVV---TDDCLELIAKSFKNFKVLVLSSCEGFS-----TDGLAAIAATCRNLKELDLRESD-VDD 170 (594)
T ss_dssp HHHHCTTCCEEEEESCBC---CHHHHHHHHHHCTTCCEEEEESCEEEE-----HHHHHHHHHHCTTCCEEECTTCE-EEC
T ss_pred HHHhCCCCCeEEeeCcEE---cHHHHHHHHHhCCCCcEEeCCCcCCCC-----HHHHHHHHHhCCCCCEEeCcCCc-cCC
Confidence 344788999999998753 222333343 7899999999865 222 12255556689999999999998 443
Q ss_pred -----cchhhhccCCCcEEeccCcc-cc--cccCccccCCCCccEeecCCCcccccccccCCCcccccccCceEecCcc-
Q 002115 637 -----LPETLCELYNLEHLDISYCR-NL--RELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGY- 707 (965)
Q Consensus 637 -----lp~~i~~L~~L~~LdL~~~~-~l--~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~- 707 (965)
++.....+++|++|++++|. .+ ..++.-+..+++|++|++++|.....+|..+.++++|+.|.+..+...-
T Consensus 171 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 250 (594)
T 2p1m_B 171 VSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVR 250 (594)
T ss_dssp CCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCC
T ss_pred cchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccc
Confidence 33333467899999999986 11 1222223567999999999986666677778888899988754332100
Q ss_pred -----CCCCCccccc---------------------cCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccC
Q 002115 708 -----DRACSLGSLK---------------------KLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLR 761 (965)
Q Consensus 708 -----~~~~~~~~l~---------------------~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~ 761 (965)
.....+..++ .+++|+.+.+.... +. .......+..+++|+.|++++| +
T Consensus 251 ~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~--~~~l~~~~~~~~~L~~L~l~~~-~- 325 (594)
T 2p1m_B 251 PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQ--SYDLVKLLCQCPKLQRLWVLDY-I- 325 (594)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CC--HHHHHHHHTTCTTCCEEEEEGG-G-
T ss_pred hhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CC--HHHHHHHHhcCCCcCEEeCcCc-c-
Confidence 0000011111 22333333333322 11 1112223445556666666554 1
Q ss_pred CCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeee---------cCCCCCCChhhHhhccCCcEEEEecCCCCCCCC
Q 002115 762 DGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQY---------RGRRNVVPKIWITSLTNLRVLSLFECRNCEHLP 832 (965)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~---------~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp 832 (965)
....+......+++|+.|+|.++ ......+. .....+++|+.|.+..|.+.....
T Consensus 326 ---------------~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~-~l~~~~~~L~~L~~~~~~l~~~~~ 389 (594)
T 2p1m_B 326 ---------------EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV-SVSMGCPKLESVLYFCRQMTNAAL 389 (594)
T ss_dssp ---------------HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH-HHHHHCTTCCEEEEEESCCCHHHH
T ss_pred ---------------CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH-HHHHhchhHHHHHHhcCCcCHHHH
Confidence 11111111123556666666432 11110000 111246667777655554433211
Q ss_pred -CCC-CCCCcceeeec-----CCCCceEeCc--cccCCCCCCCCccccCCcccccccccccccccccCcccccccccc-c
Q 002115 833 -PLG-KLPSIEVLEIY-----GVQSVKRVGN--EFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIM-I 902 (965)
Q Consensus 833 -~l~-~L~~L~~L~L~-----~~~~l~~~~~--~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~-~ 902 (965)
.++ .+|+|+.|++. +|..++..+. .+. .....+++|+.|++++ ++.... +..+. .
T Consensus 390 ~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~--------~l~~~~~~L~~L~L~~--~l~~~~-----~~~l~~~ 454 (594)
T 2p1m_B 390 ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG--------AIVEHCKDLRRLSLSG--LLTDKV-----FEYIGTY 454 (594)
T ss_dssp HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHH--------HHHHHCTTCCEEECCS--SCCHHH-----HHHHHHH
T ss_pred HHHHhhCCCcceeEeecccCCCcccccCCchhhHHH--------HHHhhCCCccEEeecC--cccHHH-----HHHHHHh
Confidence 122 46777777776 3333321110 000 0012567777777754 222211 11222 3
Q ss_pred CcccceEeeccCccCcCCCcCC-CCCCCCCeEeEcCCcc
Q 002115 903 MPRLSSLSIRRCPKLKALPDRL-LQKTTLQALTIGECPI 940 (965)
Q Consensus 903 ~~~L~~L~L~~c~~l~~lp~~l-~~l~~L~~L~l~~c~~ 940 (965)
+++|+.|+|++|......+..+ ..+++|++|++++|+.
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 8899999999997432222222 4589999999999985
No 89
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.58 E-value=2.6e-13 Score=150.11 Aligned_cols=290 Identities=12% Similarity=0.109 Sum_probs=175.9
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCC-----CCHH
Q 002115 176 DESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEP-----FDEF 250 (965)
Q Consensus 176 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~ 250 (965)
.+..|+||+++++.+.+ +.. +++.|+|++|+|||||++++++. ... ..+|+.+... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 45679999999999999 731 49999999999999999999976 222 2578887643 3445
Q ss_pred HHHHHHHHHhcC-------------C-------C---------CCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchh---
Q 002115 251 RIARAIIESLTG-------------S-------A---------SNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVY--- 298 (965)
Q Consensus 251 ~~~~~i~~~l~~-------------~-------~---------~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~--- 298 (965)
.+...+.+.+.. . . ........+...+.+... ++++|||||++..+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 555555443310 0 0 012345556665655433 499999999966321
Q ss_pred hchHhHHhhhcCCCCCcEEEEeecchHH-Hhh---------c-CC-cceEeCCCCChHHHHHHHHHHhcc-CCCccchhH
Q 002115 299 YKWEPFYKCLKNGLHESKILITTRKEIV-ARC---------M-RS-TNVIYVNVLSEIECWSVFEQLAFF-GRSMEECEK 365 (965)
Q Consensus 299 ~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~~---------~-~~-~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~ 365 (965)
..|..+...+.....+.++|+|++.... ... . +. ...+++.+|+.+++.+++...+-. +.... .
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~ 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK---D 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC---C
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC---c
Confidence 2343333333332246789999997653 211 1 11 257889999999999999875421 11111 1
Q ss_pred HHHHHHHHHHHcCCChHhHHHHHHhhcCCCCHHHHHH-HHhhhhhhhhhhhhhhhhHHH-Hhhc--CCcHhHHHHHhHhc
Q 002115 366 LENMGRQIVRKCKGLPLAAKTIASLLQSRNTEKEWQN-ILESEIWELEEVERGLLAPLL-LSYN--ELPSKIKQCFTYCA 441 (965)
Q Consensus 366 l~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~-~l~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~lk~cfl~~~ 441 (965)
...|++.|+|+|+++..++..+....+...|.. +.+. ....+...+. +.+. .||+..+..+..+|
T Consensus 232 ----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la 300 (357)
T 2fna_A 232 ----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEY-------AKKLILKEFENFLHGREIARKRYLNIMRTLS 300 (357)
T ss_dssp ----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHH-------HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHT
T ss_pred ----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHH-------HHHHHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 178999999999999999887654333333322 1111 0011111111 2221 68889999999999
Q ss_pred ccCCCceecHHHHHHHHH-hCCccccCCCCcHHHHHHHHHHHHHhCCCccccccCCCCCeeEEE-eChhHHHHH
Q 002115 442 IFPKDYQIQKKELINLWM-AQGYLSKKGTKEMEDIGEEYFNILASRSFFQDFRRYGLGENYVCK-MHDIVHDFA 513 (965)
Q Consensus 442 ~fp~~~~i~~~~li~~w~-aeg~i~~~~~~~~e~~~~~~l~~L~~~sl~~~~~~~~~~~~~~~~-~Hdlv~~~a 513 (965)
. +. +...+....- ..|. .........+++.|++.+++.... + .|+ .|++++++.
T Consensus 301 ~---g~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~l 356 (357)
T 2fna_A 301 K---CG--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLAF 356 (357)
T ss_dssp T---CB--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHHT
T ss_pred c---CC--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHhh
Confidence 8 21 4444432210 1120 011245678999999999997642 1 255 578887753
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=3.5e-15 Score=158.58 Aligned_cols=203 Identities=16% Similarity=0.099 Sum_probs=135.2
Q ss_pred CccceEEcCcccccccccchhhHH-hhhhccCCCcEEEeCCccCccccch-hhhccCCCcEEeccCcccccccC-ccccC
Q 002115 591 TCLRALTLGVHSLRLCENCIKEVR-TNIENLLHLKYLNLAHQREIEKLPE-TLCELYNLEHLDISYCRNLRELP-QGIGK 667 (965)
Q Consensus 591 ~~Lr~L~L~~n~l~~~~~~i~~lp-~~i~~L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~LdL~~~~~l~~lP-~~i~~ 667 (965)
+.|++|+|++|.+ ..++ ..+.++++|++|+|++|. +..+|. .+.++++|++|++++|. +..+| ..+.+
T Consensus 28 ~~l~~L~ls~n~l-------~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSFNPL-------RHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG 98 (276)
T ss_dssp TTCCEEECTTCCC-------CEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTT
T ss_pred CCccEEECCCCcc-------cccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc-cCccChhhhcC
Confidence 4789999995554 4444 368889999999999998 666654 78889999999999988 55544 56888
Q ss_pred CCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCC
Q 002115 668 LRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKK 747 (965)
Q Consensus 668 L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~ 747 (965)
+++|++|++++|......+..++++++|+.|++..+..... .++ ..+..+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------------~l~-------~~~~~l 148 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----------------------KLP-------EYFSNL 148 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----------------------CCC-------GGGGGC
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee-----------------------cCc-------hhhccC
Confidence 99999999988844433333577788888887765543320 011 235556
Q ss_pred CCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCc-eEEEeeecCCCCCCChhhHhhccCCcEEEEecCC
Q 002115 748 KNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLK-ELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECR 826 (965)
Q Consensus 748 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~ 826 (965)
++|+.|++++|.+++..+. .+..+..++.|. .|++++|.+.. +++..+ ...+|+.|+|++|.
T Consensus 149 ~~L~~L~Ls~N~l~~~~~~--------------~~~~l~~L~~l~l~L~ls~n~l~~--~~~~~~-~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 149 TNLEHLDLSSNKIQSIYCT--------------DLRVLHQMPLLNLSLDLSLNPMNF--IQPGAF-KEIRLKELALDTNQ 211 (276)
T ss_dssp TTCCEEECCSSCCCEECGG--------------GGHHHHTCTTCCEEEECCSSCCCE--ECTTSS-CSCCEEEEECCSSC
T ss_pred CCCCEEECCCCCCCcCCHH--------------HhhhhhhccccceeeecCCCcccc--cCcccc-CCCcccEEECCCCc
Confidence 7788888888765432211 112222233333 78888887766 552332 34478888888887
Q ss_pred CCCCCCC-CCCCCCcceeeecCCC
Q 002115 827 NCEHLPP-LGKLPSIEVLEIYGVQ 849 (965)
Q Consensus 827 ~~~~lp~-l~~L~~L~~L~L~~~~ 849 (965)
+....+. ++.+++|+.|+|++++
T Consensus 212 l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 212 LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred eeecCHhHhcccccccEEEccCCc
Confidence 6654443 6788888888888754
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=9.8e-15 Score=151.37 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=37.0
Q ss_pred CCcEEEeCCccCccccch-hhhccCCCcEEeccCcccccccCc-cccCCCCccEeecCC
Q 002115 622 HLKYLNLAHQREIEKLPE-TLCELYNLEHLDISYCRNLRELPQ-GIGKLRKLMYLENDG 678 (965)
Q Consensus 622 ~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~LdL~~~~~l~~lP~-~i~~L~~L~~L~l~~ 678 (965)
+|++|++++|. ++.+|. .+.++++|++|++++|..++.+|. .+.++++|++|++++
T Consensus 32 ~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp TCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE
T ss_pred cccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC
Confidence 67777777777 666654 566777777777777653555554 466677777777765
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=8.6e-16 Score=168.59 Aligned_cols=206 Identities=18% Similarity=0.218 Sum_probs=104.1
Q ss_pred CceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhc
Q 002115 564 KRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCE 643 (965)
Q Consensus 564 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~ 643 (965)
++++.|.+.++.. ....+. +..+++|++|+|++|.++ -..+|..+..+++|++|+|++|.+....|..+++
T Consensus 70 ~~l~~L~l~~n~l---~~~~~~-~~~~~~L~~L~L~~~~l~-----~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 70 QGVIAFRCPRSFM---DQPLAE-HFSPFRVQHMDLSNSVIE-----VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp TTCSEEECTTCEE---CSCCCS-CCCCBCCCEEECTTCEEC-----HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred ccceEEEcCCccc---cccchh-hccCCCCCEEEccCCCcC-----HHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 5566666655442 222222 334566666666643322 0114555556666666666666533345555666
Q ss_pred cCCCcEEeccCccccc--ccCccccCCCCccEeecCCCccccc--ccccCCCcccccccCceEecCccCCCCCccccccC
Q 002115 644 LYNLEHLDISYCRNLR--ELPQGIGKLRKLMYLENDGTYSLRY--LPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKL 719 (965)
Q Consensus 644 L~~L~~LdL~~~~~l~--~lP~~i~~L~~L~~L~l~~~~~~~~--~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 719 (965)
+++|++|++++|..+. .+|..+..+++|++|++++|..+.. +|.
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------------------------------- 188 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-------------------------------- 188 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH--------------------------------
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH--------------------------------
Confidence 6666666666653233 2444455556666666655511110 122
Q ss_pred CcCCcceeeccCCCCCHhHHHHhhccCCC-CCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEee
Q 002115 720 NLLRYCRIHGLGDVSDAGEARRAELEKKK-NLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQ 798 (965)
Q Consensus 720 ~~L~~l~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 798 (965)
.+..++ +|++|++++|.+.- ....++..+..+++|+.|++++
T Consensus 189 -----------------------~~~~l~~~L~~L~l~~~~~~~--------------~~~~l~~~~~~~~~L~~L~l~~ 231 (336)
T 2ast_B 189 -----------------------AVAHVSETITQLNLSGYRKNL--------------QKSDLSTLVRRCPNLVHLDLSD 231 (336)
T ss_dssp -----------------------HHHHSCTTCCEEECCSCGGGS--------------CHHHHHHHHHHCTTCSEEECTT
T ss_pred -----------------------HHHhcccCCCEEEeCCCcccC--------------CHHHHHHHHhhCCCCCEEeCCC
Confidence 223344 56666665552100 1122233334456677777777
Q ss_pred ecCCCCCCChhhHhhccCCcEEEEecCCCCC--CCCCCCCCCCcceeeecCC
Q 002115 799 YRGRRNVVPKIWITSLTNLRVLSLFECRNCE--HLPPLGKLPSIEVLEIYGV 848 (965)
Q Consensus 799 ~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~--~lp~l~~L~~L~~L~L~~~ 848 (965)
|....+..+ ..+..+++|+.|+|++|.... .+..++++++|+.|++++|
T Consensus 232 ~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 232 SVMLKNDCF-QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCGGGG-GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCcCCHHHH-HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 663221133 355667777777777774211 1223666777777777765
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=1.7e-15 Score=169.52 Aligned_cols=264 Identities=15% Similarity=0.045 Sum_probs=181.6
Q ss_pred ceEEEEEEEeCCCccchh----hHhhhcCceeEEEecccccccccccchHH-------hhcCCccceEEcCccccccccc
Q 002115 540 KKVLHLMLNLDGRHLVSI----SIWDHVKRLRSLLVESYEYSWSSEVLPQL-------FDKLTCLRALTLGVHSLRLCEN 608 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~----~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~-------~~~l~~Lr~L~L~~n~l~~~~~ 608 (965)
..+++|.+.++.+..... ..+..+++|++|.+.++..+.+...+|.. |..+++|++|+|++|.++ ..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~--~~ 109 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG--PT 109 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC--TT
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC--HH
Confidence 467888888876654222 22447899999999987654444334443 478999999999988876 55
Q ss_pred chhhHHhhhhccCCCcEEEeCCccCcc-----ccchhhhcc---------CCCcEEeccCcccc-cccC---ccccCCCC
Q 002115 609 CIKEVRTNIENLLHLKYLNLAHQREIE-----KLPETLCEL---------YNLEHLDISYCRNL-RELP---QGIGKLRK 670 (965)
Q Consensus 609 ~i~~lp~~i~~L~~Lr~L~L~~~~~i~-----~lp~~i~~L---------~~L~~LdL~~~~~l-~~lP---~~i~~L~~ 670 (965)
....+|..+..+++|++|+|++|. ++ .++..+..+ ++|++|++++|... ..+| ..+..+++
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 556789999999999999999999 54 244445555 99999999999833 2455 46778999
Q ss_pred ccEeecCCCcccc-----cccccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhcc
Q 002115 671 LMYLENDGTYSLR-----YLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELE 745 (965)
Q Consensus 671 L~~L~l~~~~~~~-----~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~ 745 (965)
|++|++++|.... ..|..+..+++|+.|++..+.... .....+...+.
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~---------------------------~g~~~l~~~l~ 241 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH---------------------------LGSSALAIALK 241 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH---------------------------HHHHHHHHHGG
T ss_pred cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc---------------------------HHHHHHHHHHc
Confidence 9999999994331 234467777888888776554321 00122334567
Q ss_pred CCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcC--CCCCCCceEEEeeecCCCC---CCChhhH-hhccCCcE
Q 002115 746 KKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEAL--GPPPNLKELRIYQYRGRRN---VVPKIWI-TSLTNLRV 819 (965)
Q Consensus 746 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~L~~~~~~~~---~~p~~~~-~~l~~L~~ 819 (965)
.+++|+.|+|++|.++.. ....++..+ .++++|+.|+|++|.+... .+| .++ .++++|++
T Consensus 242 ~~~~L~~L~L~~n~i~~~-------------~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~-~~l~~~l~~L~~ 307 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSAR-------------GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK-TVIDEKMPDLLF 307 (386)
T ss_dssp GCTTCCEEECTTCCCCHH-------------HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH-HHHHHHCTTCCE
T ss_pred cCCCcCEEECCCCCCchh-------------hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH-HHHHhcCCCceE
Confidence 778899999998865321 122344555 4488999999999987641 144 344 56899999
Q ss_pred EEEecCCCCCCCCC----CCCCCCcceeeecC
Q 002115 820 LSLFECRNCEHLPP----LGKLPSIEVLEIYG 847 (965)
Q Consensus 820 L~L~~~~~~~~lp~----l~~L~~L~~L~L~~ 847 (965)
|+|++|.+....+. ...++.++.+.+..
T Consensus 308 L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 308 LELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp EECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred EEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 99999987765431 22345555555543
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=157.13 Aligned_cols=205 Identities=18% Similarity=0.075 Sum_probs=108.1
Q ss_pred CccceEEcCcccccccccchhhHHhhh--hccCCCcEEEeCCccCccccc----hhhhccCCCcEEeccCcccccccCcc
Q 002115 591 TCLRALTLGVHSLRLCENCIKEVRTNI--ENLLHLKYLNLAHQREIEKLP----ETLCELYNLEHLDISYCRNLRELPQG 664 (965)
Q Consensus 591 ~~Lr~L~L~~n~l~~~~~~i~~lp~~i--~~L~~Lr~L~L~~~~~i~~lp----~~i~~L~~L~~LdL~~~~~l~~lP~~ 664 (965)
++|++|+|++|.++ ...|..+ +.+++|++|+|++|.+....| ..+..+++|++|++++|......|..
T Consensus 91 ~~L~~L~l~~n~l~------~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 164 (310)
T 4glp_A 91 SRLKELTLEDLKIT------GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQ 164 (310)
T ss_dssp SCCCEEEEESCCCB------SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTS
T ss_pred CceeEEEeeCCEec------cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHH
Confidence 44556666544332 2233333 555556666666555222222 22344555666666655522222334
Q ss_pred ccCCCCccEeecCCCccccc--cc--ccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHH
Q 002115 665 IGKLRKLMYLENDGTYSLRY--LP--VGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEAR 740 (965)
Q Consensus 665 i~~L~~L~~L~l~~~~~~~~--~p--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~ 740 (965)
+..+++|++|++++|..... ++ ..++.+++|++|++..+... ......
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~----------------------------~l~~~~ 216 (310)
T 4glp_A 165 VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME----------------------------TPTGVC 216 (310)
T ss_dssp CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC----------------------------CHHHHH
T ss_pred hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC----------------------------chHHHH
Confidence 55555666666655532211 11 11234444444444332211 111111
Q ss_pred HhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEE
Q 002115 741 RAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVL 820 (965)
Q Consensus 741 ~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L 820 (965)
...+..+++|+.|+|++|.+.+..+. ....+..+++|+.|+|++|.+.. +| ..+ +++|+.|
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~l~~~~p~--------------~~~~~~~~~~L~~L~Ls~N~l~~--lp-~~~--~~~L~~L 277 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNSLRATVNP--------------SAPRCMWSSALNSLNLSFAGLEQ--VP-KGL--PAKLRVL 277 (310)
T ss_dssp HHHHHHTCCCSSEECTTSCCCCCCCS--------------CCSSCCCCTTCCCEECCSSCCCS--CC-SCC--CSCCSCE
T ss_pred HHHHhcCCCCCEEECCCCCCCccchh--------------hHHhccCcCcCCEEECCCCCCCc--hh-hhh--cCCCCEE
Confidence 12245667888888888876553221 01122234688888888888876 66 333 3788888
Q ss_pred EEecCCCCCCCCCCCCCCCcceeeecCCC
Q 002115 821 SLFECRNCEHLPPLGKLPSIEVLEIYGVQ 849 (965)
Q Consensus 821 ~L~~~~~~~~lp~l~~L~~L~~L~L~~~~ 849 (965)
+|++|.+.. +|.+..+++|+.|+|++++
T Consensus 278 ~Ls~N~l~~-~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 278 DLSSNRLNR-APQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp ECCSCCCCS-CCCTTSCCCCSCEECSSTT
T ss_pred ECCCCcCCC-CchhhhCCCccEEECcCCC
Confidence 888887654 3556778888888887754
No 95
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=5.7e-15 Score=156.34 Aligned_cols=193 Identities=23% Similarity=0.278 Sum_probs=104.2
Q ss_pred hcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCcc-cc
Q 002115 588 DKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQG-IG 666 (965)
Q Consensus 588 ~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~-i~ 666 (965)
..+++|+.|++++|.+ ..++ .+..+++|++|++++|. +..+| .+.++++|++|++++|. +..+|.. +.
T Consensus 38 ~~l~~L~~L~l~~~~i-------~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~ 106 (272)
T 3rfs_A 38 NELNSIDQIIANNSDI-------KSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFD 106 (272)
T ss_dssp HHHTTCCEEECTTSCC-------CCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTT
T ss_pred ccccceeeeeeCCCCc-------cccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCc-cCccChhHhc
Confidence 3455555555553322 2222 34555556666666555 44443 35555666666666555 4444333 45
Q ss_pred CCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccC
Q 002115 667 KLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEK 746 (965)
Q Consensus 667 ~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~ 746 (965)
.+++|++|++++|......|..++.+++|+.|++..+..... +. ..+..
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------------------~~------~~~~~ 155 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL-------------------------PK------GVFDK 155 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------------------CT------TTTTT
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCcc-------------------------CH------HHhcc
Confidence 555666666655532222222245555555555443322210 00 12334
Q ss_pred CCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCC
Q 002115 747 KKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECR 826 (965)
Q Consensus 747 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~ 826 (965)
+++|+.|++++|.+++.. ...+..+++|+.|++++|.+.. .++.++..+++|+.|+|++|.
T Consensus 156 l~~L~~L~l~~n~l~~~~-----------------~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 156 LTNLTELDLSYNQLQSLP-----------------EGVFDKLTQLKDLRLYQNQLKS--VPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CTTCCEEECCSSCCCCCC-----------------TTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSC
T ss_pred CccCCEEECCCCCcCccC-----------------HHHhcCCccCCEEECCCCcCCc--cCHHHHhCCcCCCEEEccCCC
Confidence 456667777766554322 1234566778888888777766 554566778888888888875
Q ss_pred CCCCCCCCCCCCCcceeeecC
Q 002115 827 NCEHLPPLGKLPSIEVLEIYG 847 (965)
Q Consensus 827 ~~~~lp~l~~L~~L~~L~L~~ 847 (965)
+. +.+|+|+.|.+..
T Consensus 217 ~~------~~~~~l~~l~~~~ 231 (272)
T 3rfs_A 217 WD------CTCPGIRYLSEWI 231 (272)
T ss_dssp BC------CCTTTTHHHHHHH
T ss_pred cc------ccCcHHHHHHHHH
Confidence 43 3466777777765
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=3.1e-14 Score=156.66 Aligned_cols=69 Identities=17% Similarity=0.286 Sum_probs=35.2
Q ss_pred cEEEeCCccCccccchhhhccCCCcEEeccCcccccccCcc-ccCCCCccEeecCCCccccccccc-CCCccccc
Q 002115 624 KYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQG-IGKLRKLMYLENDGTYSLRYLPVG-IGELIRLR 696 (965)
Q Consensus 624 r~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~ 696 (965)
++++.++++ ++.+|..+ ..++++|+|++|. ++.+|.+ |.++++|++|++++|.....+|.+ |.++++|+
T Consensus 12 ~~v~C~~~~-Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 12 RVFLCQESK-VTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp TEEEEESTT-CCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred CEEEecCCC-CCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence 345555555 55555544 2455666666555 5555543 455666666666555433444432 34444443
No 97
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.53 E-value=3.2e-14 Score=153.38 Aligned_cols=193 Identities=17% Similarity=0.226 Sum_probs=141.9
Q ss_pred hcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhh
Q 002115 562 HVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETL 641 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i 641 (965)
.+++|+.|.+.++... . ++ .+..+++|++|+|++|. +..++. +..+++|++|+|++|. +..+| .+
T Consensus 39 ~l~~L~~L~l~~~~i~---~-l~-~~~~l~~L~~L~L~~n~-------i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~ 103 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT---T-IE-GVQYLNNLIGLELKDNQ-------ITDLAP-LKNLTKITELELSGNP-LKNVS-AI 103 (308)
T ss_dssp HHHTCCEEECTTSCCC---C-CT-TGGGCTTCCEEECCSSC-------CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GG
T ss_pred HcCCcCEEEeeCCCcc---C-ch-hhhccCCCCEEEccCCc-------CCCChh-HccCCCCCEEEccCCc-CCCch-hh
Confidence 6788999998887632 2 34 37889999999999554 445555 8889999999999998 88877 48
Q ss_pred hccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCc
Q 002115 642 CELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNL 721 (965)
Q Consensus 642 ~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 721 (965)
.++++|++|++++|. +..+|. +..+++|++|++++| .+..+|. ++.+++|+.|++..+.... +
T Consensus 104 ~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~-----~-------- 166 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQVSD-----L-------- 166 (308)
T ss_dssp TTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSCCCC-----C--------
T ss_pred cCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCCcCCC-----C--------
Confidence 899999999999998 777764 888999999999988 4455554 7778888888776543322 0
Q ss_pred CCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecC
Q 002115 722 LRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRG 801 (965)
Q Consensus 722 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 801 (965)
..+..+++|+.|++++|.+++.. .+..+++|+.|++++|.+
T Consensus 167 --------------------~~l~~l~~L~~L~l~~n~l~~~~-------------------~l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 167 --------------------TPLANLSKLTTLKADDNKISDIS-------------------PLASLPNLIEVHLKNNQI 207 (308)
T ss_dssp --------------------GGGTTCTTCCEEECCSSCCCCCG-------------------GGGGCTTCCEEECTTSCC
T ss_pred --------------------hhhcCCCCCCEEECCCCccCcCh-------------------hhcCCCCCCEEEccCCcc
Confidence 01345567788888877654321 145667888888888887
Q ss_pred CCCCCChhhHhhccCCcEEEEecCCCCC
Q 002115 802 RRNVVPKIWITSLTNLRVLSLFECRNCE 829 (965)
Q Consensus 802 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~ 829 (965)
.. .+ .+..+++|+.|+|++|.+..
T Consensus 208 ~~--~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 208 SD--VS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CB--CG--GGTTCTTCCEEEEEEEEEEC
T ss_pred Cc--cc--cccCCCCCCEEEccCCeeec
Confidence 76 55 26778888888888886543
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.50 E-value=1.1e-14 Score=157.37 Aligned_cols=229 Identities=19% Similarity=0.100 Sum_probs=159.4
Q ss_pred ceEEEEEEEeCCCccc----hhhHhhhcCceeEEEecccccccccccchHHh--hcCCccceEEcCcccccccccchhhH
Q 002115 540 KKVLHLMLNLDGRHLV----SISIWDHVKRLRSLLVESYEYSWSSEVLPQLF--DKLTCLRALTLGVHSLRLCENCIKEV 613 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~----~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~--~~l~~Lr~L~L~~n~l~~~~~~i~~l 613 (965)
..++++.+........ ..... .+++|+.|.+.++. +....|..+ ..+++|++|+|++|.++ .. ...+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~---l~~~~~~~~~~~~~~~L~~L~Ls~n~i~--~~-~~~~ 136 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVL-AYSRLKELTLEDLK---ITGTMPPLPLEATGLALSSLRLRNVSWA--TG-RSWL 136 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHH-HHSCCCEEEEESCC---CBSCCCCCSSSCCCBCCSSCEEESCCCS--ST-TSSH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhc-ccCceeEEEeeCCE---eccchhhhhhhccCCCCCEEEeeccccc--ch-hhhh
Confidence 3567777776665421 11222 56779999999886 334455556 88999999999988775 21 1112
Q ss_pred H-hhhhccCCCcEEEeCCccCcccc-chhhhccCCCcEEeccCcccccc--cCc--cccCCCCccEeecCCCcccccccc
Q 002115 614 R-TNIENLLHLKYLNLAHQREIEKL-PETLCELYNLEHLDISYCRNLRE--LPQ--GIGKLRKLMYLENDGTYSLRYLPV 687 (965)
Q Consensus 614 p-~~i~~L~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~LdL~~~~~l~~--lP~--~i~~L~~L~~L~l~~~~~~~~~p~ 687 (965)
+ ..+..+++|++|+|++|. +..+ |..++++++|++|++++|..... +|. .+..+++|++|++++| .+..+|.
T Consensus 137 ~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~ 214 (310)
T 4glp_A 137 AELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTG 214 (310)
T ss_dssp HHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHH
T ss_pred HHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHH
Confidence 2 345689999999999999 5555 46889999999999999984331 332 3478999999999999 4444444
Q ss_pred c----CCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCC
Q 002115 688 G----IGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDG 763 (965)
Q Consensus 688 ~----i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~ 763 (965)
. ++.+++|++|++..|......+..+. .+..+++|+.|+|++|.++..
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~----------------------------~~~~~~~L~~L~Ls~N~l~~l 266 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSHNSLRATVNPSAP----------------------------RCMWSSALNSLNLSFAGLEQV 266 (310)
T ss_dssp HHHHHHHHTCCCSSEECTTSCCCCCCCSCCS----------------------------SCCCCTTCCCEECCSSCCCSC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCccchhhHH----------------------------hccCcCcCCEEECCCCCCCch
Confidence 2 46778888888877665542111111 112235888999998876532
Q ss_pred CcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCC
Q 002115 764 DEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCE 829 (965)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~ 829 (965)
+..+ +++|+.|+|++|.+.. +| . +..+++|+.|+|++|.+..
T Consensus 267 ------------------p~~~--~~~L~~L~Ls~N~l~~--~~-~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 267 ------------------PKGL--PAKLRVLDLSSNRLNR--AP-Q-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ------------------CSCC--CSCCSCEECCSCCCCS--CC-C-TTSCCCCSCEECSSTTTSC
T ss_pred ------------------hhhh--cCCCCEEECCCCcCCC--Cc-h-hhhCCCccEEECcCCCCCC
Confidence 2223 2799999999999887 66 3 5688999999999997654
No 99
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.50 E-value=2.5e-14 Score=148.24 Aligned_cols=194 Identities=14% Similarity=0.160 Sum_probs=101.0
Q ss_pred ccceEEcCcccccccccchhhHHh-hhhccCCCcEEEeCCccCccccch-hhhccCCCcEEeccC-cccccccCc-cccC
Q 002115 592 CLRALTLGVHSLRLCENCIKEVRT-NIENLLHLKYLNLAHQREIEKLPE-TLCELYNLEHLDISY-CRNLRELPQ-GIGK 667 (965)
Q Consensus 592 ~Lr~L~L~~n~l~~~~~~i~~lp~-~i~~L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~LdL~~-~~~l~~lP~-~i~~ 667 (965)
.|++|+|++|. +..+|. .+.++++|++|++++|..++.+|. .+.++++|++|++++ |. +..+|. .+..
T Consensus 32 ~l~~L~l~~n~-------l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~ 103 (239)
T 2xwt_C 32 STQTLKLIETH-------LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKE 103 (239)
T ss_dssp TCCEEEEESCC-------CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEEC
T ss_pred cccEEEEeCCc-------ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCC
Confidence 56666666333 333433 456666677777766643555553 566666777777766 44 555543 4566
Q ss_pred CCCccEeecCCCcccccccccCCCccccc---ccCceEe-cCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhh
Q 002115 668 LRKLMYLENDGTYSLRYLPVGIGELIRLR---IVKEFVV-GGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAE 743 (965)
Q Consensus 668 L~~L~~L~l~~~~~~~~~p~~i~~l~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~ 743 (965)
+++|++|++++| .+..+|. ++.+++|+ .|++..+ .... ++. ..
T Consensus 104 l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~-------------------------i~~------~~ 150 (239)
T 2xwt_C 104 LPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTS-------------------------IPV------NA 150 (239)
T ss_dssp CTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCE-------------------------ECT------TT
T ss_pred CCCCCEEeCCCC-CCccccc-cccccccccccEEECCCCcchhh-------------------------cCc------cc
Confidence 667777777666 3444554 55566655 4444333 1111 000 12
Q ss_pred ccCCCCCC-ceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeec-CCCCCCChhhHhhc-cCCcEE
Q 002115 744 LEKKKNLS-NLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYR-GRRNVVPKIWITSL-TNLRVL 820 (965)
Q Consensus 744 l~~~~~L~-~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~~~~p~~~~~~l-~~L~~L 820 (965)
+..+++|+ .|++++|.++.... ..+.. ++|+.|++++|. +.. +|+..|..+ ++|+.|
T Consensus 151 ~~~l~~L~~~L~l~~n~l~~i~~-----------------~~~~~-~~L~~L~L~~n~~l~~--i~~~~~~~l~~~L~~L 210 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNNGFTSVQG-----------------YAFNG-TKLDAVYLNKNKYLTV--IDKDAFGGVYSGPSLL 210 (239)
T ss_dssp TTTTBSSEEEEECCSCCCCEECT-----------------TTTTT-CEEEEEECTTCTTCCE--ECTTTTTTCSBCCSEE
T ss_pred ccchhcceeEEEcCCCCCcccCH-----------------hhcCC-CCCCEEEcCCCCCccc--CCHHHhhccccCCcEE
Confidence 23344555 55555553321100 11112 456666666663 444 433455566 666666
Q ss_pred EEecCCCCCCCCCCCCCCCcceeeecCC
Q 002115 821 SLFECRNCEHLPPLGKLPSIEVLEIYGV 848 (965)
Q Consensus 821 ~L~~~~~~~~lp~l~~L~~L~~L~L~~~ 848 (965)
+|++|.+.. +|.- .+++|+.|++.++
T Consensus 211 ~l~~N~l~~-l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 211 DVSQTSVTA-LPSK-GLEHLKELIARNT 236 (239)
T ss_dssp ECTTCCCCC-CCCT-TCTTCSEEECTTC
T ss_pred ECCCCcccc-CChh-HhccCceeeccCc
Confidence 666665543 3322 5566666666553
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.49 E-value=4.4e-14 Score=155.49 Aligned_cols=94 Identities=17% Similarity=0.246 Sum_probs=46.5
Q ss_pred hhhHHhhhhccCCCcEEEeCCccCccccch-hhhccCCCcEEeccCcccccccCcc-ccCCCCccEeecCCCcccccc-c
Q 002115 610 IKEVRTNIENLLHLKYLNLAHQREIEKLPE-TLCELYNLEHLDISYCRNLRELPQG-IGKLRKLMYLENDGTYSLRYL-P 686 (965)
Q Consensus 610 i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~LdL~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~-p 686 (965)
+..+|..+ ..++++|+|++|. ++.+|. .|.+|++|++|+|++|...+.+|.+ |.++++|+++...+++.+..+ |
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence 34444433 2355566666665 555554 3555666666666665533444432 455555554333222233333 3
Q ss_pred ccCCCcccccccCceEecCc
Q 002115 687 VGIGELIRLRIVKEFVVGGG 706 (965)
Q Consensus 687 ~~i~~l~~L~~L~l~~~~~~ 706 (965)
..+..+++|+.|++..+...
T Consensus 98 ~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp TSBCCCTTCCEEEEEEECCS
T ss_pred hhhhhccccccccccccccc
Confidence 34555566666655555443
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=7.7e-15 Score=162.43 Aligned_cols=36 Identities=14% Similarity=-0.018 Sum_probs=17.2
Q ss_pred CCCceEEEeeecCCCCCCCh----hhHhhccCCcEEEEecCC
Q 002115 789 PNLKELRIYQYRGRRNVVPK----IWITSLTNLRVLSLFECR 826 (965)
Q Consensus 789 ~~L~~L~L~~~~~~~~~~p~----~~~~~l~~L~~L~L~~~~ 826 (965)
++|+.|+|++|.+.. .+. .++..+++|+.|+|++|.
T Consensus 225 ~~L~~L~Ls~N~l~~--~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 225 NHVVSLNLCLNCLHG--PSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp TTCCEEECCSSCCCC--CCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCceEEECcCCCCCc--HHHHHHHHHHhcCCCccEEEeccCC
Confidence 355555555555444 221 112244555555555554
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.46 E-value=3.5e-13 Score=140.66 Aligned_cols=172 Identities=22% Similarity=0.249 Sum_probs=100.9
Q ss_pred ccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccc-hhhhccCCCcEEeccCcccccccC-ccccCCC
Q 002115 592 CLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLP-ETLCELYNLEHLDISYCRNLRELP-QGIGKLR 669 (965)
Q Consensus 592 ~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~LdL~~~~~l~~lP-~~i~~L~ 669 (965)
..+.++++ +..+..+|..+. .+|++|+|++|. +..++ ..+.++++|++|++++|. +..+| ..+..++
T Consensus 15 ~~~~l~~~-------~~~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 83 (251)
T 3m19_A 15 GKKEVDCQ-------GKSLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLT 83 (251)
T ss_dssp GGTEEECT-------TCCCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCT
T ss_pred CCeEEecC-------CCCccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCC
Confidence 34556666 334445554443 466777777776 44443 356667777777777766 44433 3356667
Q ss_pred CccEeecCCCccccccc-ccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCC
Q 002115 670 KLMYLENDGTYSLRYLP-VGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKK 748 (965)
Q Consensus 670 ~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~ 748 (965)
+|++|++++|.. ..+| ..++. ++
T Consensus 84 ~L~~L~L~~n~l-~~~~~~~~~~-------------------------------------------------------l~ 107 (251)
T 3m19_A 84 ELGTLGLANNQL-ASLPLGVFDH-------------------------------------------------------LT 107 (251)
T ss_dssp TCCEEECTTSCC-CCCCTTTTTT-------------------------------------------------------CT
T ss_pred cCCEEECCCCcc-cccChhHhcc-------------------------------------------------------cC
Confidence 777777766632 2222 12222 33
Q ss_pred CCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCC
Q 002115 749 NLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNC 828 (965)
Q Consensus 749 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~ 828 (965)
+|+.|+|++|.++...+ ..+..+++|+.|+|++|.+.. +|+..+..+++|+.|+|++|.+.
T Consensus 108 ~L~~L~L~~N~l~~~~~-----------------~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 108 QLDKLYLGGNQLKSLPS-----------------GVFDRLTKLKELRLNTNQLQS--IPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TCCEEECCSSCCCCCCT-----------------TTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCEEEcCCCcCCCcCh-----------------hHhccCCcccEEECcCCcCCc--cCHHHcCcCcCCCEEECCCCcCC
Confidence 45555555554332111 123455677777777776665 55456777888888888888766
Q ss_pred CCCCC-CCCCCCcceeeecCCC
Q 002115 829 EHLPP-LGKLPSIEVLEIYGVQ 849 (965)
Q Consensus 829 ~~lp~-l~~L~~L~~L~L~~~~ 849 (965)
...+. +..+++|++|+|++|+
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCC
T ss_pred ccCHHHHhCCCCCCEEEeeCCc
Confidence 55443 7778888888887754
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=3.3e-14 Score=157.30 Aligned_cols=257 Identities=11% Similarity=0.031 Sum_probs=149.5
Q ss_pred eCCCccchhhHhhhcCceeEEEecccccccccccch----HHhhcCC-ccceEEcCcccccccccchhhHHhhhhcc-CC
Q 002115 549 LDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLP----QLFDKLT-CLRALTLGVHSLRLCENCIKEVRTNIENL-LH 622 (965)
Q Consensus 549 ~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~----~~~~~l~-~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L-~~ 622 (965)
.+.+....+.+....++|+.|.+.++.. ....+ ..|.+++ +|++|+|++|.++ ......+...+... ++
T Consensus 7 ~n~~~~~~~~~~~~~~~L~~L~Ls~n~l---~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~--~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 7 LHPGSNPVEEFTSIPHGVTSLDLSLNNL---YSISTVELIQAFANTPASVTSLNLSGNSLG--FKNSDELVQILAAIPAN 81 (362)
T ss_dssp CCTTCCHHHHHHTSCTTCCEEECTTSCG---GGSCHHHHHHHHHTCCTTCCEEECCSSCGG--GSCHHHHHHHHHTSCTT
T ss_pred cccchHHHHHHHhCCCCceEEEccCCCC---ChHHHHHHHHHHHhCCCceeEEECcCCCCC--HHHHHHHHHHHhccCCC
Confidence 3444433444453455588888888763 23233 5677787 8888888876665 22222233333333 88
Q ss_pred CcEEEeCCccCccc-cchhh----hcc-CCCcEEeccCcccccccCc-c----ccC-CCCccEeecCCCcccc----ccc
Q 002115 623 LKYLNLAHQREIEK-LPETL----CEL-YNLEHLDISYCRNLRELPQ-G----IGK-LRKLMYLENDGTYSLR----YLP 686 (965)
Q Consensus 623 Lr~L~L~~~~~i~~-lp~~i----~~L-~~L~~LdL~~~~~l~~lP~-~----i~~-L~~L~~L~l~~~~~~~----~~p 686 (965)
|++|+|++|. ++. .+..+ ..+ ++|++|++++|. +...+. . +.. .++|++|++++|.... .++
T Consensus 82 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 82 VTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp CCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred ccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 8888888888 553 34433 344 788888888888 554443 2 333 2588888888884432 334
Q ss_pred ccCCCcc-cccccCceEecCccCCCCCcc-ccccC-CcCCcceeeccCCCCCHhHHHHhhccC-CCCCCceEEEeeccCC
Q 002115 687 VGIGELI-RLRIVKEFVVGGGYDRACSLG-SLKKL-NLLRYCRIHGLGDVSDAGEARRAELEK-KKNLSNLELHFDHLRD 762 (965)
Q Consensus 687 ~~i~~l~-~L~~L~l~~~~~~~~~~~~~~-~l~~L-~~L~~l~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~L~~~~l~~ 762 (965)
..+..+. +|+.|++..+.........+. .+... +.|+.+.+............+...+.. .++|+.|+|++|.++.
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 4445554 888888877766542222222 22233 355544444322111112233344444 4699999999997765
Q ss_pred CCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhh-------HhhccCCcEEEEecCCC
Q 002115 763 GDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIW-------ITSLTNLRVLSLFECRN 827 (965)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~-------~~~l~~L~~L~L~~~~~ 827 (965)
.. ...+...+..+++|+.|+|++|.+.. +.+.. +..+++|+.|+|++|.+
T Consensus 240 ~~-------------~~~l~~~~~~l~~L~~L~L~~n~l~~--i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 240 PS-------------LENLKLLKDSLKHLQTVYLDYDIVKN--MSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp CC-------------HHHHHHTTTTTTTCSEEEEEHHHHTT--CCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred HH-------------HHHHHHHHhcCCCccEEEeccCCccc--cCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 32 23344566788999999999998554 33222 22445555566665543
No 104
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.44 E-value=4e-11 Score=133.92 Aligned_cols=294 Identities=12% Similarity=0.019 Sum_probs=181.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccccccc--------ccceEEEEcCCCC-C
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRN--------FEKRIWVCVSEPF-D 248 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--------F~~~~wv~vs~~~-~ 248 (965)
..++||+++++++.+++..... ....+.+.|+|++|+||||||+.+++. .... ....+|++++... +
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCC
Confidence 6799999999999988864221 224568999999999999999999986 2221 2346788877766 8
Q ss_pred HHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhH-HhhhcCCCCCcEEEEeecchH
Q 002115 249 EFRIARAIIESLTGSAS--NFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPF-YKCLKNGLHESKILITTRKEI 325 (965)
Q Consensus 249 ~~~~~~~i~~~l~~~~~--~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l-~~~l~~~~~gs~ilvTtR~~~ 325 (965)
...++..++.++.+... .......+...+...+..++.+|||||++......+... ...+.....+..||+||+...
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~ 175 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTT
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCc
Confidence 88999999988854322 123346667777778877666999999976432222222 333333226778999988642
Q ss_pred H----Hhhc--CCcceEeCCCCChHHHHHHHHHHhcc-CCCccchhHHHHHHHHHHHHcC---CChH-hHHHHHHh--hc
Q 002115 326 V----ARCM--RSTNVIYVNVLSEIECWSVFEQLAFF-GRSMEECEKLENMGRQIVRKCK---GLPL-AAKTIASL--LQ 392 (965)
Q Consensus 326 v----~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~l~~~~~~i~~~c~---GlPl-ai~~~~~~--l~ 392 (965)
. ...+ .-...+.+.+++.++..++|...+.. -......+ +..+.|++.|+ |.|. |+..+-.. +.
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 1 1111 11238999999999999999987531 11111112 23566777777 8887 43333322 22
Q ss_pred ---CCCCHHHHHHHHhhhhhhhhhhhhhhhhHHHHhhcCCcHhHHHHHhHhcccCCCceecHHHHHHHHHhCCccccCCC
Q 002115 393 ---SRNTEKEWQNILESEIWELEEVERGLLAPLLLSYNELPSKIKQCFTYCAIFPKDYQIQKKELINLWMAQGYLSKKGT 469 (965)
Q Consensus 393 ---~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~lk~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~ 469 (965)
..-+.+.+..+++... ...+.-++..|+++.+..+..++....+-.+. +.....--..| + .
T Consensus 253 ~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~----~ 316 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q----K 316 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C----C
T ss_pred cCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C----C
Confidence 1236677766655421 12345577889988887777676611101111 11111111122 1 1
Q ss_pred CcHHHHHHHHHHHHHhCCCcccccc
Q 002115 470 KEMEDIGEEYFNILASRSFFQDFRR 494 (965)
Q Consensus 470 ~~~e~~~~~~l~~L~~~sl~~~~~~ 494 (965)
.........++..|..++++.....
T Consensus 317 ~~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 317 PLSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEec
Confidence 1223557788999999999987543
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.43 E-value=2.3e-13 Score=145.22 Aligned_cols=80 Identities=23% Similarity=0.348 Sum_probs=43.8
Q ss_pred hcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccC
Q 002115 588 DKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGK 667 (965)
Q Consensus 588 ~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~ 667 (965)
..+++|+.|++++|. +..++ .+..+++|++|+|++|. +..+|. +.++++|++|++++|. +..+| .+..
T Consensus 43 ~~l~~L~~L~l~~~~-------i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~ 110 (291)
T 1h6t_A 43 NELNSIDQIIANNSD-------IKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKD 110 (291)
T ss_dssp HHHHTCCEEECTTSC-------CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTT
T ss_pred hhcCcccEEEccCCC-------cccCh-hHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCCh-hhcc
Confidence 445556666666333 22332 25556666666666665 555554 5666666666666655 44443 3555
Q ss_pred CCCccEeecCCC
Q 002115 668 LRKLMYLENDGT 679 (965)
Q Consensus 668 L~~L~~L~l~~~ 679 (965)
+++|++|++++|
T Consensus 111 l~~L~~L~L~~n 122 (291)
T 1h6t_A 111 LKKLKSLSLEHN 122 (291)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEECCCC
Confidence 666666666555
No 106
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.42 E-value=2.4e-11 Score=135.95 Aligned_cols=298 Identities=14% Similarity=0.041 Sum_probs=186.1
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccc-cceEEEEcCCCCCHHHHHHH
Q 002115 177 ESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNF-EKRIWVCVSEPFDEFRIARA 255 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~ 255 (965)
++.++||+.+++++.+++........+..+.+.|+|.+|+||||||+.+++. ..... ...+|+.++...+...+...
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 3679999999999999986531111122348999999999999999999976 33321 24678888888888899999
Q ss_pred HHHHhcCCCCC-CCCHHHHHHHHHHHhC--CceEEEEEeCCCcchhhchHhHHhhhcCCC----CCcEEEEeecchHHHh
Q 002115 256 IIESLTGSASN-FGEFQSLMQHIQECVE--GKKFLLVLDDLWNEVYYKWEPFYKCLKNGL----HESKILITTRKEIVAR 328 (965)
Q Consensus 256 i~~~l~~~~~~-~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~ilvTtR~~~v~~ 328 (965)
++..++..... ......+...+...+. +++.+||||+++..+......+...+.... .+..||+||+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 99988654322 2345556666665553 678999999997754444555555543311 3667888887654333
Q ss_pred hcC-------CcceEeCCCCChHHHHHHHHHHhccCC-CccchhHHHHHHHHHHHHc---------CCChHhHHHHHHhh
Q 002115 329 CMR-------STNVIYVNVLSEIECWSVFEQLAFFGR-SMEECEKLENMGRQIVRKC---------KGLPLAAKTIASLL 391 (965)
Q Consensus 329 ~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~l~~~~~~i~~~c---------~GlPlai~~~~~~l 391 (965)
.+. ....+.+.+++.++..+++...+.... .... -.+..+.|++.+ +|.|..+..+....
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSY---SEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSS---CHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 221 123799999999999999988753200 0011 134567788888 78875554443321
Q ss_pred c------CC--CCHHHHHHHHhhhhhhhhhhhhhhhhHHHHhhcCCcHhHHHHHhHhcccC---CCceecHHHHHHHHHh
Q 002115 392 Q------SR--NTEKEWQNILESEIWELEEVERGLLAPLLLSYNELPSKIKQCFTYCAIFP---KDYQIQKKELINLWMA 460 (965)
Q Consensus 392 ~------~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~lk~cfl~~~~fp---~~~~i~~~~li~~w~a 460 (965)
. .. -+.+....+..... ...+.-.+..||.+.+.++..++.+. .+-.+....+...+-.
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 1 11 13333333222211 11123346678888888887777654 2225666666655433
Q ss_pred ----CCccccCCCCcHHHHHHHHHHHHHhCCCcccccc
Q 002115 461 ----QGYLSKKGTKEMEDIGEEYFNILASRSFFQDFRR 494 (965)
Q Consensus 461 ----eg~i~~~~~~~~e~~~~~~l~~L~~~sl~~~~~~ 494 (965)
.|.. .-.......++++|...+++.....
T Consensus 321 ~~~~~~~~-----~~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 321 VCEEYGER-----PRVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHHTTCC-----CCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHcCCC-----CCCHHHHHHHHHHHHhCCCeEEeee
Confidence 1211 1123456789999999999987654
No 107
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.42 E-value=5.3e-11 Score=133.08 Aligned_cols=293 Identities=13% Similarity=0.039 Sum_probs=181.0
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccccccc------ccceEEEEcCCCCCHH
Q 002115 177 ESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRN------FEKRIWVCVSEPFDEF 250 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~vs~~~~~~ 250 (965)
+..++||+.+++.+.+++...-. ....+.+.|+|++|+||||+|+.+++. .... -...+|+++....+..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~ 93 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPY 93 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHH
Confidence 36799999999999998854311 224568899999999999999999986 2221 1245688888888999
Q ss_pred HHHHHHHHHhcCCCCC-CCCHHHHHHHHHHHh--CCceEEEEEeCCCcchhh--chHhHHhhhc---CC--CCCcEEEEe
Q 002115 251 RIARAIIESLTGSASN-FGEFQSLMQHIQECV--EGKKFLLVLDDLWNEVYY--KWEPFYKCLK---NG--LHESKILIT 320 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~-~~~~~~l~~~l~~~l--~~kr~LlVlDdv~~~~~~--~~~~l~~~l~---~~--~~gs~ilvT 320 (965)
.++..++.+++...+. ......+...+...+ .+++.+||||+++.-... ..+.+...+. .. ..+..+|.|
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 9999999998754322 233556666666666 356899999999764322 1222332222 11 345677888
Q ss_pred ecchHH--------HhhcCCcceEeCCCCChHHHHHHHHHHhcc--CCCccchhHHHHHHHHHHHHcC---CChHh-HHH
Q 002115 321 TRKEIV--------ARCMRSTNVIYVNVLSEIECWSVFEQLAFF--GRSMEECEKLENMGRQIVRKCK---GLPLA-AKT 386 (965)
Q Consensus 321 tR~~~v--------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~l~~~~~~i~~~c~---GlPla-i~~ 386 (965)
|+.... ...+. ...+.+.+++.++..+++...+.. ... ...+ +..+.+++.++ |.|-. +..
T Consensus 174 t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~~G~~r~~~~~ 248 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPG-VLDP---DVVPLCAALAAREHGDARRALDL 248 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTT-TBCS---SHHHHHHHHHHSSSCCHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCC-CCCH---HHHHHHHHHHHHhccCHHHHHHH
Confidence 875422 11111 247889999999999999887531 111 1112 23566777777 99943 333
Q ss_pred HHHhhc-----C--CCCHHHHHHHHhhhhhhhhhhhhhhhhHHHHhhcCCcHhHHHHHhHhc-ccCCCceecHHHHHHHH
Q 002115 387 IASLLQ-----S--RNTEKEWQNILESEIWELEEVERGLLAPLLLSYNELPSKIKQCFTYCA-IFPKDYQIQKKELINLW 458 (965)
Q Consensus 387 ~~~~l~-----~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~lk~cfl~~~-~fp~~~~i~~~~li~~w 458 (965)
+..... . .-+.+.+..++.... ...+.-++..||.+.+..+...+ ++.....+....+.+..
T Consensus 249 l~~a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~ 318 (387)
T 2v1u_A 249 LRVAGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERY 318 (387)
T ss_dssp HHHHHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 322221 1 125666666554321 11344567889998887776666 44322245555444332
Q ss_pred H----hCCccccCCCCcHHHHHHHHHHHHHhCCCccccc
Q 002115 459 M----AQGYLSKKGTKEMEDIGEEYFNILASRSFFQDFR 493 (965)
Q Consensus 459 ~----aeg~i~~~~~~~~e~~~~~~l~~L~~~sl~~~~~ 493 (965)
. ..| + .......+..++++|...+++....
T Consensus 319 ~~~~~~~~-~----~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 319 KELTSTLG-L----EHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHHHTT-C----CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhcC-C----CCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 1 122 1 1123456788999999999998754
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.41 E-value=2.7e-13 Score=158.85 Aligned_cols=173 Identities=21% Similarity=0.242 Sum_probs=108.6
Q ss_pred hhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCcccc
Q 002115 587 FDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIG 666 (965)
Q Consensus 587 ~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~ 666 (965)
+..+.+|+.|++++|. +..+| .+..+++|++|+|++|. +..+|. +.++++|+.|+|++|. +..+| .+.
T Consensus 39 ~~~L~~L~~L~l~~n~-------i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~ 106 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-------IKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLK 106 (605)
T ss_dssp HHHHTTCCCCBCTTCC-------CCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TST
T ss_pred hhcCCCCCEEECcCCC-------CCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhc
Confidence 4566777777777433 34444 46777777777777777 666666 7777777777777776 66655 577
Q ss_pred CCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccC
Q 002115 667 KLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEK 746 (965)
Q Consensus 667 ~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~ 746 (965)
.+++|++|++++|. +..+ ..+..+++|+.|++..+.+.. + ..+..
T Consensus 107 ~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~-----l----------------------------~~l~~ 151 (605)
T 1m9s_A 107 DLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKITD-----I----------------------------TVLSR 151 (605)
T ss_dssp TCTTCCEEECTTSC-CCCC-GGGGGCTTCSEEECCSSCCCC-----C----------------------------GGGGS
T ss_pred cCCCCCEEEecCCC-CCCC-ccccCCCccCEEECCCCccCC-----c----------------------------hhhcc
Confidence 77777777777773 3333 346666666666655443221 0 12344
Q ss_pred CCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCC
Q 002115 747 KKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECR 826 (965)
Q Consensus 747 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~ 826 (965)
+++|+.|+|+.|.+.+. .. +..+++|+.|+|++|.+.. +| .+..+++|+.|+|++|.
T Consensus 152 l~~L~~L~Ls~N~l~~~------------------~~-l~~l~~L~~L~Ls~N~i~~--l~--~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 152 LTKLDTLSLEDNQISDI------------------VP-LAGLTKLQNLYLSKNHISD--LR--ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CTTCSEEECCSSCCCCC------------------GG-GTTCTTCCEEECCSSCCCB--CG--GGTTCTTCSEEECCSEE
T ss_pred cCCCCEEECcCCcCCCc------------------hh-hccCCCCCEEECcCCCCCC--Ch--HHccCCCCCEEEccCCc
Confidence 55677777776654331 11 4556677777777776665 44 35667777777777776
Q ss_pred CCC
Q 002115 827 NCE 829 (965)
Q Consensus 827 ~~~ 829 (965)
+..
T Consensus 209 l~~ 211 (605)
T 1m9s_A 209 CLN 211 (605)
T ss_dssp EEC
T ss_pred CcC
Confidence 543
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.41 E-value=3e-13 Score=144.35 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=37.9
Q ss_pred ccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCccccccc
Q 002115 619 NLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIV 698 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 698 (965)
.+.+|++|++++|. +..+|. +..+++|++|++++|. +..+|. +..+++|++|++++| .+..+| .++.+++|+.|
T Consensus 44 ~l~~L~~L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCC-cccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCC-cCCCCh-hhccCCCCCEE
Confidence 44555555555555 444443 5555555555555554 444443 555555555555555 222332 24455555555
Q ss_pred Cce
Q 002115 699 KEF 701 (965)
Q Consensus 699 ~l~ 701 (965)
++.
T Consensus 118 ~L~ 120 (291)
T 1h6t_A 118 SLE 120 (291)
T ss_dssp ECT
T ss_pred ECC
Confidence 443
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=3.8e-13 Score=157.56 Aligned_cols=170 Identities=19% Similarity=0.246 Sum_probs=138.8
Q ss_pred hhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCccccc
Q 002115 617 IENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLR 696 (965)
Q Consensus 617 i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 696 (965)
+..|.+|++|++++|. +..+|. +..|++|+.|+|++|. +..+|. +..+++|++|+|++| .+..+| .++.+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~l~~-l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCCCTT-GGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCC-CCCChH-HccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCC
Confidence 5688999999999999 888885 9999999999999998 777776 899999999999999 445554 688888888
Q ss_pred ccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChh
Q 002115 697 IVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEED 776 (965)
Q Consensus 697 ~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 776 (965)
.|++..+.+.. + ..+..+++|+.|+|+.|.+.+.
T Consensus 113 ~L~Ls~N~l~~-------------------------l--------~~l~~l~~L~~L~Ls~N~l~~l------------- 146 (605)
T 1m9s_A 113 SLSLEHNGISD-------------------------I--------NGLVHLPQLESLYLGNNKITDI------------- 146 (605)
T ss_dssp EEECTTSCCCC-------------------------C--------GGGGGCTTCSEEECCSSCCCCC-------------
T ss_pred EEEecCCCCCC-------------------------C--------ccccCCCccCEEECCCCccCCc-------------
Confidence 88776544322 0 1245567899999999866432
Q ss_pred hhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCCC
Q 002115 777 EDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGVQ 849 (965)
Q Consensus 777 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~ 849 (965)
..+..+++|+.|+|++|.+.. +++ +..+++|+.|+|++|.+.. +|.++.|++|+.|+|++|+
T Consensus 147 ------~~l~~l~~L~~L~Ls~N~l~~--~~~--l~~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 147 ------TVLSRLTKLDTLSLEDNQISD--IVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ------GGGGSCTTCSEEECCSSCCCC--CGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEECCSEE
T ss_pred ------hhhcccCCCCEEECcCCcCCC--chh--hccCCCCCEEECcCCCCCC-ChHHccCCCCCEEEccCCc
Confidence 346678999999999999887 663 7899999999999997665 5779999999999999865
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.38 E-value=5.7e-13 Score=154.19 Aligned_cols=92 Identities=24% Similarity=0.269 Sum_probs=54.5
Q ss_pred ccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCc
Q 002115 592 CLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKL 671 (965)
Q Consensus 592 ~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L 671 (965)
+|+.|+|++|.+ ..+|..+. ++|++|+|++|. ++.+| ..+++|++|++++|. +..+|. +.+ +|
T Consensus 60 ~L~~L~Ls~n~L-------~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNL-------SSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SL 122 (571)
T ss_dssp TCSEEECCSSCC-------SCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TC
T ss_pred CccEEEeCCCCC-------CccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CC
Confidence 666777764333 33554442 567777777776 66666 346667777777766 555665 444 67
Q ss_pred cEeecCCCcccccccccCCCcccccccCceEec
Q 002115 672 MYLENDGTYSLRYLPVGIGELIRLRIVKEFVVG 704 (965)
Q Consensus 672 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 704 (965)
++|++++| .+..+|. .+++|+.|++..|.
T Consensus 123 ~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~ 151 (571)
T 3cvr_A 123 KHLDVDNN-QLTMLPE---LPALLEYINADNNQ 151 (571)
T ss_dssp CEEECCSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred CEEECCCC-cCCCCCC---cCccccEEeCCCCc
Confidence 77777666 3334555 45566666555443
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.37 E-value=1.5e-12 Score=130.29 Aligned_cols=151 Identities=15% Similarity=0.216 Sum_probs=109.7
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhc
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIEN 619 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~ 619 (965)
..++++.+..+.+..++ . +..+++|++|.+.++.. .. ++ .+..+++|++|++++|.++ ...|..++.
T Consensus 44 ~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~l~~n~~---~~-~~-~l~~l~~L~~L~l~~n~l~------~~~~~~l~~ 110 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-G-IEYAHNIKDLTINNIHA---TN-YN-PISGLSNLERLRIMGKDVT------SDKIPNLSG 110 (197)
T ss_dssp HTCCEEEEESSCCSCCT-T-GGGCTTCSEEEEESCCC---SC-CG-GGTTCTTCCEEEEECTTCB------GGGSCCCTT
T ss_pred CCccEEeccCCCccChH-H-HhcCCCCCEEEccCCCC---Cc-ch-hhhcCCCCCEEEeECCccC------cccChhhcC
Confidence 46778888888777555 3 34788888888888743 22 23 4778888888888866554 235667788
Q ss_pred cCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccC
Q 002115 620 LLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVK 699 (965)
Q Consensus 620 L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 699 (965)
+++|++|++++|.+....|..++++++|++|++++|..+..+| .+..+++|++|++++| .+..++ .+..+++|+.|+
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLY 187 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCEEE
Confidence 8888888888888444577778888888888888887567776 6888888888888888 444555 677788888887
Q ss_pred ceEecCc
Q 002115 700 EFVVGGG 706 (965)
Q Consensus 700 l~~~~~~ 706 (965)
+..+...
T Consensus 188 l~~N~i~ 194 (197)
T 4ezg_A 188 AFSQTIG 194 (197)
T ss_dssp ECBC---
T ss_pred eeCcccC
Confidence 7766543
No 113
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.37 E-value=9e-13 Score=137.53 Aligned_cols=131 Identities=24% Similarity=0.288 Sum_probs=59.8
Q ss_pred ceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccc-hhhhc
Q 002115 565 RLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLP-ETLCE 643 (965)
Q Consensus 565 ~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp-~~i~~ 643 (965)
+++.|.+.++. +....+..|.++++|++|+|++|.++ ...|..+..+++|++|+|++|. +..+| ..+.+
T Consensus 36 ~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 105 (251)
T 3m19_A 36 DTEKLDLQSTG---LATLSDATFRGLTKLTWLNLDYNQLQ------TLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDH 105 (251)
T ss_dssp TCCEEECTTSC---CCCCCTTTTTTCTTCCEEECTTSCCC------CCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred CCCEEEccCCC---cCccCHhHhcCcccCCEEECCCCcCC------ccCHhHhccCCcCCEEECCCCc-ccccChhHhcc
Confidence 44555555443 22223334455555555555533332 1112234455555555555555 33333 23445
Q ss_pred cCCCcEEeccCcccccccCcc-ccCCCCccEeecCCCcccccccc-cCCCcccccccCceEecCcc
Q 002115 644 LYNLEHLDISYCRNLRELPQG-IGKLRKLMYLENDGTYSLRYLPV-GIGELIRLRIVKEFVVGGGY 707 (965)
Q Consensus 644 L~~L~~LdL~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~ 707 (965)
+++|++|++++|. +..+|.. +..+++|++|++++| .+..+|. .++.+++|+.|++..+....
T Consensus 106 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 106 LTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 5555555555554 4444433 344555555555555 2233333 34555555555555444443
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=5e-13 Score=140.21 Aligned_cols=167 Identities=23% Similarity=0.263 Sum_probs=113.5
Q ss_pred cCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCC
Q 002115 589 KLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKL 668 (965)
Q Consensus 589 ~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L 668 (965)
.+..+..|+++ .+.+..++ .+..+.+|++|++++|. +..+| .+..+++|++|++++|. +..+|. +..+
T Consensus 17 ~l~~l~~l~l~-------~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l 84 (263)
T 1xeu_A 17 GLANAVKQNLG-------KQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDL 84 (263)
T ss_dssp HHHHHHHHHHT-------CSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTC
T ss_pred HHHHHHHHHhc-------CCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccC
Confidence 45566777777 34444454 56788888888888888 77887 58888888888888887 777766 8888
Q ss_pred CCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCC
Q 002115 669 RKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKK 748 (965)
Q Consensus 669 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~ 748 (965)
++|++|++++|. +..+|.... +
T Consensus 85 ~~L~~L~L~~N~-l~~l~~~~~---------------------------------------------------------~ 106 (263)
T 1xeu_A 85 TKLEELSVNRNR-LKNLNGIPS---------------------------------------------------------A 106 (263)
T ss_dssp SSCCEEECCSSC-CSCCTTCCC---------------------------------------------------------S
T ss_pred CCCCEEECCCCc-cCCcCcccc---------------------------------------------------------C
Confidence 888888888872 222221110 2
Q ss_pred CCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCC
Q 002115 749 NLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNC 828 (965)
Q Consensus 749 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~ 828 (965)
+|+.|++++|.+++ +..+..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.
T Consensus 107 ~L~~L~L~~N~l~~-------------------~~~l~~l~~L~~L~Ls~N~i~~--~~--~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 107 CLSRLFLDNNELRD-------------------TDSLIHLKNLEILSIRNNKLKS--IV--MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp SCCEEECCSSCCSB-------------------SGGGTTCTTCCEEECTTSCCCB--CG--GGGGCTTCCEEECTTSCCC
T ss_pred cccEEEccCCccCC-------------------ChhhcCcccccEEECCCCcCCC--Ch--HHccCCCCCEEECCCCcCc
Confidence 45555555554322 1234556677777777777666 44 4667788888888888665
Q ss_pred CCCCCCCCCCCcceeeecCCC
Q 002115 829 EHLPPLGKLPSIEVLEIYGVQ 849 (965)
Q Consensus 829 ~~lp~l~~L~~L~~L~L~~~~ 849 (965)
.. +.++.+++|+.|++++++
T Consensus 164 ~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 164 NT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp BC-TTSTTCCCCCEEEEEEEE
T ss_pred ch-HHhccCCCCCEEeCCCCc
Confidence 54 667788888888887754
No 115
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=7.3e-11 Score=131.90 Aligned_cols=297 Identities=13% Similarity=0.105 Sum_probs=175.3
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccc---cceEEEEcCCCCCHHHHH
Q 002115 177 ESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNF---EKRIWVCVSEPFDEFRIA 253 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~ 253 (965)
+..++||+++++.+.+++..... ......+.|+|++|+||||||+.+++. ....+ ...+|+.+....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 46799999999999998864311 224568999999999999999999986 33332 246688877767788888
Q ss_pred HHHHHHhcCCCC-CCCCHHHHHHHHHHHhC--CceEEEEEeCCCcch----hhchHhHHhhhcC-CCCCcEEEEeecchH
Q 002115 254 RAIIESLTGSAS-NFGEFQSLMQHIQECVE--GKKFLLVLDDLWNEV----YYKWEPFYKCLKN-GLHESKILITTRKEI 325 (965)
Q Consensus 254 ~~i~~~l~~~~~-~~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~ilvTtR~~~ 325 (965)
..++.+++.... ...........+.+.+. +++.+||+|+++... ...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 888887754322 12235555555665553 558999999996532 2223334333322 233556788887654
Q ss_pred HHhhcCC-------cceEeCCCCChHHHHHHHHHHhccC-CCccchhHHHHHHHHHHHHcC---CChHhHHHHHHhh---
Q 002115 326 VARCMRS-------TNVIYVNVLSEIECWSVFEQLAFFG-RSMEECEKLENMGRQIVRKCK---GLPLAAKTIASLL--- 391 (965)
Q Consensus 326 v~~~~~~-------~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~l~~~~~~i~~~c~---GlPlai~~~~~~l--- 391 (965)
....+.. ...+.+.+++.++.++++...+... ...... .++.+.+++.++ |.|..+..+....
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3222111 2489999999999999998864211 111111 234556666666 9998444332221
Q ss_pred c---C--CCCHHHHHHHHhhhhhhhhhhhhhhhhHHHHhhcCCcHhHHHHHhHhcccCC-C-ceecHHHHHHHH--HhCC
Q 002115 392 Q---S--RNTEKEWQNILESEIWELEEVERGLLAPLLLSYNELPSKIKQCFTYCAIFPK-D-YQIQKKELINLW--MAQG 462 (965)
Q Consensus 392 ~---~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~lk~cfl~~~~fp~-~-~~i~~~~li~~w--~aeg 462 (965)
. . .-+.+.+..++.... ...+.-++..+|.+.+..+..++...+ + -.+....+.+.. +++.
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 1 124555555444321 123455677888888777766663221 1 123443332221 1111
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhCCCccccc
Q 002115 463 YLSKKGTKEMEDIGEEYFNILASRSFFQDFR 493 (965)
Q Consensus 463 ~i~~~~~~~~e~~~~~~l~~L~~~sl~~~~~ 493 (965)
+ . . ..........+++.|...+++....
T Consensus 322 ~-g-~-~~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 322 L-G-V-EAVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp H-T-C-CCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred c-C-C-CCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 0 0 0 1112345678899999999997643
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.33 E-value=4.3e-14 Score=164.67 Aligned_cols=193 Identities=18% Similarity=0.125 Sum_probs=107.9
Q ss_pred hcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCcc-------------CccccchhhhccCCCcEEe-cc
Q 002115 588 DKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQR-------------EIEKLPETLCELYNLEHLD-IS 653 (965)
Q Consensus 588 ~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~-------------~i~~lp~~i~~L~~L~~Ld-L~ 653 (965)
..+++|+.|+|+ ++.+..+|..|+++++|+.|++++|. ..+..|..+++|.+|+.|+ ++
T Consensus 346 ~~~~~L~~L~Ls-------~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~ 418 (567)
T 1dce_A 346 ATDEQLFRCELS-------VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 418 (567)
T ss_dssp STTTTSSSCCCC-------HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred ccCccceeccCC-------hhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh
Confidence 457788888888 55567788888888888888886663 2445566677777777777 45
Q ss_pred CcccccccCc------cccC--CCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcCCcc
Q 002115 654 YCRNLRELPQ------GIGK--LRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYC 725 (965)
Q Consensus 654 ~~~~l~~lP~------~i~~--L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l 725 (965)
.|. +..++. .+.. ...|+.|++++| .+..+|. ++.+++|+.|++..|.+..
T Consensus 419 ~n~-~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~------------------ 477 (567)
T 1dce_A 419 AAY-LDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRA------------------ 477 (567)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCC------------------
T ss_pred hcc-cchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcccccc------------------
Confidence 443 333321 0111 124666777666 3444554 6666666666554432221
Q ss_pred eeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCC
Q 002115 726 RIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNV 805 (965)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 805 (965)
+| ..+..+++|+.|+|++|.+++ ++ .+..+++|+.|+|++|.+..
T Consensus 478 -------lp-------~~~~~l~~L~~L~Ls~N~l~~------------------lp-~l~~l~~L~~L~Ls~N~l~~-- 522 (567)
T 1dce_A 478 -------LP-------PALAALRCLEVLQASDNALEN------------------VD-GVANLPRLQELLLCNNRLQQ-- 522 (567)
T ss_dssp -------CC-------GGGGGCTTCCEEECCSSCCCC------------------CG-GGTTCSSCCEEECCSSCCCS--
T ss_pred -------cc-------hhhhcCCCCCEEECCCCCCCC------------------Cc-ccCCCCCCcEEECCCCCCCC--
Confidence 11 123344555666666554432 11 34455566666666666555
Q ss_pred C--ChhhHhhccCCcEEEEecCCCCCCCCCCC----CCCCcceee
Q 002115 806 V--PKIWITSLTNLRVLSLFECRNCEHLPPLG----KLPSIEVLE 844 (965)
Q Consensus 806 ~--p~~~~~~l~~L~~L~L~~~~~~~~lp~l~----~L~~L~~L~ 844 (965)
+ | ..+..+++|+.|+|++|.+....|... .+|+|+.|+
T Consensus 523 ~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 523 SAAI-QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSTT-GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCc-HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 3 4 455566666666666665544433322 255555553
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.30 E-value=2.1e-12 Score=149.41 Aligned_cols=189 Identities=21% Similarity=0.252 Sum_probs=132.5
Q ss_pred CceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhc
Q 002115 564 KRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCE 643 (965)
Q Consensus 564 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~ 643 (965)
.+++.|.+.++... . +|..+ +++|++|+|++|. +..+| ..+++|++|+|++|. ++.+|. +++
T Consensus 59 ~~L~~L~Ls~n~L~---~-lp~~l--~~~L~~L~Ls~N~-------l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~ 120 (571)
T 3cvr_A 59 NQFSELQLNRLNLS---S-LPDNL--PPQITVLEITQNA-------LISLP---ELPASLEYLDACDNR-LSTLPE-LPA 120 (571)
T ss_dssp TTCSEEECCSSCCS---C-CCSCC--CTTCSEEECCSSC-------CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT
T ss_pred CCccEEEeCCCCCC---c-cCHhH--cCCCCEEECcCCC-------Ccccc---cccCCCCEEEccCCC-CCCcch-hhc
Confidence 38999999887643 3 44433 3789999999554 45566 457899999999998 778998 665
Q ss_pred cCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcCC
Q 002115 644 LYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLR 723 (965)
Q Consensus 644 L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 723 (965)
+|++|++++|. +..+|. .+++|++|++++| .+..+|. .+++|+.|++..|.+..
T Consensus 121 --~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~L~~---------------- 174 (571)
T 3cvr_A 121 --SLKHLDVDNNQ-LTMLPE---LPALLEYINADNN-QLTMLPE---LPTSLEVLSVRNNQLTF---------------- 174 (571)
T ss_dssp --TCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSC----------------
T ss_pred --CCCEEECCCCc-CCCCCC---cCccccEEeCCCC-ccCcCCC---cCCCcCEEECCCCCCCC----------------
Confidence 99999999998 777887 6899999999998 4555776 46777877776554332
Q ss_pred cceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcC-CCCCCCceEEEeeecCC
Q 002115 724 YCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEAL-GPPPNLKELRIYQYRGR 802 (965)
Q Consensus 724 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~~~ 802 (965)
++ . +. ++|+.|+|++|.++.... +...+ ..++.|+.|+|++|.+.
T Consensus 175 ---------lp-------~-l~--~~L~~L~Ls~N~L~~lp~---------------~~~~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 175 ---------LP-------E-LP--ESLEALDVSTNLLESLPA---------------VPVRNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp ---------CC-------C-CC--TTCCEEECCSSCCSSCCC---------------CC--------CCEEEECCSSCCC
T ss_pred ---------cc-------h-hh--CCCCEEECcCCCCCchhh---------------HHHhhhcccccceEEecCCCcce
Confidence 11 0 11 478888888886653210 00011 12234488999999888
Q ss_pred CCCCChhhHhhccCCcEEEEecCCCCCCCCC
Q 002115 803 RNVVPKIWITSLTNLRVLSLFECRNCEHLPP 833 (965)
Q Consensus 803 ~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~ 833 (965)
. +| .++..+++|+.|+|++|.+...+|.
T Consensus 221 ~--lp-~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 221 H--IP-ENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp C--CC-GGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred e--cC-HHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 7 78 5666789999999999987765544
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.28 E-value=2.4e-11 Score=122.69 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=35.7
Q ss_pred CCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC-CCCCCCcceeeecCC
Q 002115 787 PPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP-LGKLPSIEVLEIYGV 848 (965)
Q Consensus 787 ~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~-l~~L~~L~~L~L~~~ 848 (965)
.+++|+.|++++|.+.. +++..+..+++|+.|+|++|.+....+. ++.+++|++|+|++|
T Consensus 98 ~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQS--LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CccCCCEEEcCCCcCcc--cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 34455555555555444 4434456677777777777765544333 666777777777664
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.28 E-value=4.6e-12 Score=126.67 Aligned_cols=130 Identities=16% Similarity=0.148 Sum_probs=92.4
Q ss_pred hcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhh
Q 002115 562 HVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETL 641 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i 641 (965)
.+++|+.|.+.++... . +| .+..+++|++|++++|.+ ..+ ..+..+++|++|++++|.+....|..+
T Consensus 42 ~l~~L~~L~l~~n~i~---~-l~-~l~~l~~L~~L~l~~n~~-------~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l 108 (197)
T 4ezg_A 42 QMNSLTYITLANINVT---D-LT-GIEYAHNIKDLTINNIHA-------TNY-NPISGLSNLERLRIMGKDVTSDKIPNL 108 (197)
T ss_dssp HHHTCCEEEEESSCCS---C-CT-TGGGCTTCSEEEEESCCC-------SCC-GGGTTCTTCCEEEEECTTCBGGGSCCC
T ss_pred hcCCccEEeccCCCcc---C-hH-HHhcCCCCCEEEccCCCC-------Ccc-hhhhcCCCCCEEEeECCccCcccChhh
Confidence 6778888888877532 2 34 377888888888885432 323 357778888888888888333467778
Q ss_pred hccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccCceEecC
Q 002115 642 CELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGG 705 (965)
Q Consensus 642 ~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~ 705 (965)
+++++|++|++++|......|..+..+++|++|++++|..+..+| .+..+++|+.|++..+..
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC
Confidence 888888888888887444567778888888888888885466665 577777777777655443
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.27 E-value=4.8e-12 Score=127.87 Aligned_cols=126 Identities=28% Similarity=0.410 Sum_probs=55.5
Q ss_pred ceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHh-hhhccCCCcEEEeCCccCccccch-hhh
Q 002115 565 RLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRT-NIENLLHLKYLNLAHQREIEKLPE-TLC 642 (965)
Q Consensus 565 ~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~-~i~~L~~Lr~L~L~~~~~i~~lp~-~i~ 642 (965)
+|+.|.+.++.. ....+..|..+++|++|+|++|.+ ..+|. .+..+++|++|+|++|. +..+|. .+.
T Consensus 29 ~l~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~ 97 (208)
T 2o6s_A 29 QTTYLDLETNSL---KSLPNGVFDELTSLTQLYLGGNKL-------QSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFD 97 (208)
T ss_dssp TCSEEECCSSCC---CCCCTTTTTTCTTCSEEECCSSCC-------CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred CCcEEEcCCCcc---CcCChhhhcccccCcEEECCCCcc-------CccChhhcCCCCCcCEEECCCCc-CCccCHhHhc
Confidence 445555544432 222233344555555555553322 22222 23445555555555554 444433 234
Q ss_pred ccCCCcEEeccCcccccccCcc-ccCCCCccEeecCCCccccccccc-CCCcccccccCceEe
Q 002115 643 ELYNLEHLDISYCRNLRELPQG-IGKLRKLMYLENDGTYSLRYLPVG-IGELIRLRIVKEFVV 703 (965)
Q Consensus 643 ~L~~L~~LdL~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~ 703 (965)
++++|++|++++|. +..+|.. +..+++|++|++++|. +..+|.. +..+++|+.|++..+
T Consensus 98 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 98 KLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred CccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCC
Confidence 55555555555554 3333332 3445555555555542 2223322 444555555544443
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.27 E-value=5.5e-12 Score=128.35 Aligned_cols=146 Identities=15% Similarity=0.147 Sum_probs=102.5
Q ss_pred EEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcE
Q 002115 546 MLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKY 625 (965)
Q Consensus 546 ~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~ 625 (965)
...++++..+|.... ++++.|.+.++. +..+.+..|..+++|++|+|++|.++ ...|..+.++++|++
T Consensus 17 ~c~~~~l~~iP~~l~---~~l~~L~l~~n~---i~~i~~~~~~~l~~L~~L~Ls~N~i~------~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 17 DCRGKGLTEIPTNLP---ETITEIRLEQNT---IKVIPPGAFSPYKKLRRIDLSNNQIS------ELAPDAFQGLRSLNS 84 (220)
T ss_dssp ECTTSCCSSCCSSCC---TTCCEEECCSSC---CCEECTTSSTTCTTCCEEECCSSCCC------EECTTTTTTCSSCCE
T ss_pred EcCCCCcCcCCCccC---cCCCEEECCCCc---CCCcCHhHhhCCCCCCEEECCCCcCC------CcCHHHhhCCcCCCE
Confidence 333444444444332 578888888876 34444556888888888888855543 223677888888888
Q ss_pred EEeCCccCccccchh-hhccCCCcEEeccCccccccc-CccccCCCCccEeecCCCccccccc-ccCCCcccccccCceE
Q 002115 626 LNLAHQREIEKLPET-LCELYNLEHLDISYCRNLREL-PQGIGKLRKLMYLENDGTYSLRYLP-VGIGELIRLRIVKEFV 702 (965)
Q Consensus 626 L~L~~~~~i~~lp~~-i~~L~~L~~LdL~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~ 702 (965)
|+|++|. +..+|.. +.++++|++|+|++|. +..+ |..+..+++|++|++++|.. ..+| ..+..+++|+.|++..
T Consensus 85 L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 85 LVLYGNK-ITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCCc-CCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcC-CEECHHHHhCCCCCCEEEeCC
Confidence 8888888 7777764 5788888888888888 5544 55678888888888888844 4444 4477788888887776
Q ss_pred ecCc
Q 002115 703 VGGG 706 (965)
Q Consensus 703 ~~~~ 706 (965)
|...
T Consensus 162 N~~~ 165 (220)
T 2v9t_B 162 NPFI 165 (220)
T ss_dssp SCEE
T ss_pred CCcC
Confidence 6543
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.27 E-value=6e-12 Score=129.03 Aligned_cols=146 Identities=25% Similarity=0.337 Sum_probs=105.2
Q ss_pred EEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHH-hhhhccCCC
Q 002115 545 LMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVR-TNIENLLHL 623 (965)
Q Consensus 545 L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp-~~i~~L~~L 623 (965)
+....+....+|... .++|+.|.+.++. +....|..|..+++|++|+|++|.+ ..+| ..+..+++|
T Consensus 24 v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~N~l-------~~i~~~~~~~l~~L 90 (229)
T 3e6j_A 24 VDCRSKRHASVPAGI---PTNAQILYLHDNQ---ITKLEPGVFDSLINLKELYLGSNQL-------GALPVGVFDSLTQL 90 (229)
T ss_dssp EECTTSCCSSCCSCC---CTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCC-------CCCCTTTTTTCTTC
T ss_pred eEccCCCcCccCCCC---CCCCCEEEcCCCc---cCccCHHHhhCccCCcEEECCCCCC-------CCcChhhcccCCCc
Confidence 333344444445443 3778888888876 4444566788888899999985443 4554 346788889
Q ss_pred cEEEeCCccCccccch-hhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCccccccc-ccCCCcccccccCce
Q 002115 624 KYLNLAHQREIEKLPE-TLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLP-VGIGELIRLRIVKEF 701 (965)
Q Consensus 624 r~L~L~~~~~i~~lp~-~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~ 701 (965)
++|+|++|. +..+|. .+..+++|++|++++|. +..+|..+..+++|++|++++| .+..+| ..+..+++|+.|++.
T Consensus 91 ~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 91 TVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred CEEECCCCc-CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEee
Confidence 999998888 767765 46788889999998888 7788888888888999998888 444555 347778888888777
Q ss_pred EecCc
Q 002115 702 VVGGG 706 (965)
Q Consensus 702 ~~~~~ 706 (965)
.|...
T Consensus 168 ~N~~~ 172 (229)
T 3e6j_A 168 GNPWD 172 (229)
T ss_dssp TSCBC
T ss_pred CCCcc
Confidence 66543
No 123
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.25 E-value=1.2e-10 Score=121.10 Aligned_cols=198 Identities=14% Similarity=0.111 Sum_probs=120.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
..++||+..++.+..++.... ....+.|+|.+|+||||+|+.+++.......+.. + .. ..... ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~--~-~~---~~~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA--T-PC---GVCDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS--S-CC---SCSHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--C-CC---cccHH-HHHHh
Confidence 468999999999999986532 2348899999999999999999876221111100 0 00 00000 00000
Q ss_pred HHhcC-----CCCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchH-HH
Q 002115 258 ESLTG-----SASNFGEFQSLMQHIQEC----VEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEI-VA 327 (965)
Q Consensus 258 ~~l~~-----~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~ 327 (965)
..... ........+.+...+... ..+++.+||+||++..+...++.+...+.....+..+|+||+... +.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 00000 000001112222222211 235789999999977555667778777776666788898887543 11
Q ss_pred h-hcCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhh
Q 002115 328 R-CMRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLL 391 (965)
Q Consensus 328 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l 391 (965)
. .......+++.+++.++..+++...+........ .+..+.|++.|+|.|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 1222468999999999999999987754322111 2346789999999999988776543
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.24 E-value=6.3e-12 Score=151.25 Aligned_cols=157 Identities=21% Similarity=0.177 Sum_probs=86.9
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccc-cccccchHHhhcCCccceEEcCcccccccccchhhHHhhhh
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYS-WSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIE 618 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~-~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~ 618 (965)
..++++.+..+.+...+.... ....|+.+.+.+.... ......+..|..++.|++|+|+ ++.+..+|..++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l-~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls-------~n~l~~l~~~~~ 244 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALL-QHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLS-------NLQIFNISANIF 244 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECT-------TSCCSCCCGGGG
T ss_pred CccceEEeeCCCCCcchhhHh-hcCccCcccccCccccccceecChhhhccCCCCcEEECC-------CCCCCCCChhhc
Confidence 457777776666654444433 4444554444332210 0112356667888888888888 444456777777
Q ss_pred ccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCccccccc
Q 002115 619 NLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIV 698 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 698 (965)
++.+|++|+|++|. +..+|..|++|++|++|+|++|. +..+|..|+.|++|++|+|++| .+..+|.+|++|++|+.|
T Consensus 245 ~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 245 KYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFL 321 (727)
T ss_dssp GCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCE
T ss_pred CCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEE
Confidence 88888888888888 67888888888888888888887 6688888888888888888888 556788888888888888
Q ss_pred CceEecCcc
Q 002115 699 KEFVVGGGY 707 (965)
Q Consensus 699 ~l~~~~~~~ 707 (965)
++..|.+..
T Consensus 322 ~L~~N~l~~ 330 (727)
T 4b8c_D 322 GVEGNPLEK 330 (727)
T ss_dssp ECTTSCCCS
T ss_pred eCCCCccCC
Confidence 887776653
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=1.4e-11 Score=119.65 Aligned_cols=133 Identities=23% Similarity=0.233 Sum_probs=101.1
Q ss_pred hcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccc-cchh
Q 002115 562 HVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEK-LPET 640 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~-lp~~ 640 (965)
..++|+.|.+.++... ...+|..+..+++|++|+|++|.++ .+ ..++.+++|++|+|++|. +.. +|..
T Consensus 22 ~~~~L~~L~l~~n~l~--~~~i~~~~~~l~~L~~L~l~~n~l~-------~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 90 (168)
T 2ell_A 22 TPAAVRELVLDNCKSN--DGKIEGLTAEFVNLEFLSLINVGLI-------SV-SNLPKLPKLKKLELSENR-IFGGLDML 90 (168)
T ss_dssp CTTSCSEEECCSCBCB--TTBCSSCCGGGGGCCEEEEESSCCC-------CC-SSCCCCSSCCEEEEESCC-CCSCCCHH
T ss_pred CcccCCEEECCCCCCC--hhhHHHHHHhCCCCCEEeCcCCCCC-------Ch-hhhccCCCCCEEECcCCc-CchHHHHH
Confidence 3467888888887632 0235666788889999999866543 33 567888899999999998 555 7877
Q ss_pred hhccCCCcEEeccCcccccccC--ccccCCCCccEeecCCCcccccccc----cCCCcccccccCceEecCcc
Q 002115 641 LCELYNLEHLDISYCRNLRELP--QGIGKLRKLMYLENDGTYSLRYLPV----GIGELIRLRIVKEFVVGGGY 707 (965)
Q Consensus 641 i~~L~~L~~LdL~~~~~l~~lP--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~l~~~~~~~ 707 (965)
+.++++|++|++++|. +..+| ..+..+++|++|++++| .+..+|. .+..+++|+.|++..+....
T Consensus 91 ~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp HHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred HhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 7789999999999987 77766 67888899999999888 4555665 67888888888888776543
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.23 E-value=1.7e-11 Score=124.66 Aligned_cols=148 Identities=14% Similarity=0.139 Sum_probs=107.3
Q ss_pred EEEEEeCCCccchhhHhhhcCceeEEEecccccccccccc-hHHhhcCCccceEEcCcccccccccchhhHH-hhhhccC
Q 002115 544 HLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVL-PQLFDKLTCLRALTLGVHSLRLCENCIKEVR-TNIENLL 621 (965)
Q Consensus 544 ~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l-~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp-~~i~~L~ 621 (965)
.+.+.++.+..+|..+. ..++.|.+.++.. .... +..|..+++|++|+|++|.+ ..++ ..+..+.
T Consensus 15 ~l~~s~n~l~~iP~~~~---~~~~~L~L~~N~l---~~~~~~~~~~~l~~L~~L~L~~N~i-------~~i~~~~~~~l~ 81 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP---QYTAELRLNNNEF---TVLEATGIFKKLPQLRKINFSNNKI-------TDIEEGAFEGAS 81 (220)
T ss_dssp EEECCSSCCSSCCSCCC---TTCSEEECCSSCC---CEECCCCCGGGCTTCCEEECCSSCC-------CEECTTTTTTCT
T ss_pred EeEeCCCCcccCccCCC---CCCCEEEcCCCcC---CccCchhhhccCCCCCEEECCCCcC-------CEECHHHhCCCC
Confidence 45566666655554433 4567888888763 3322 23478889999999985554 3443 4688889
Q ss_pred CCcEEEeCCccCccccch-hhhccCCCcEEeccCccccccc-CccccCCCCccEeecCCCcccccccccCCCcccccccC
Q 002115 622 HLKYLNLAHQREIEKLPE-TLCELYNLEHLDISYCRNLREL-PQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVK 699 (965)
Q Consensus 622 ~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~LdL~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 699 (965)
+|++|+|++|. +..+|. .+.++++|++|+|++|. +..+ |..+..+++|++|++++|......|..+..+++|+.|+
T Consensus 82 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 82 GVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp TCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 99999999998 666554 58889999999999988 5544 66788899999999998855554577788888888888
Q ss_pred ceEecCc
Q 002115 700 EFVVGGG 706 (965)
Q Consensus 700 l~~~~~~ 706 (965)
+..|...
T Consensus 160 L~~N~l~ 166 (220)
T 2v70_A 160 LLANPFN 166 (220)
T ss_dssp CCSCCEE
T ss_pred ecCcCCc
Confidence 8776654
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.21 E-value=1.1e-11 Score=117.79 Aligned_cols=127 Identities=22% Similarity=0.250 Sum_probs=98.2
Q ss_pred hcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccc-cchh
Q 002115 562 HVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEK-LPET 640 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~-lp~~ 640 (965)
..++++.|.+.++.... ..+|..+..+++|++|++++|.++ .+ ..++.+++|++|++++|. +.. +|..
T Consensus 15 ~~~~l~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~l~-------~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~ 83 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNE--GKLEGLTDEFEELEFLSTINVGLT-------SI-ANLPKLNKLKKLELSDNR-VSGGLEVL 83 (149)
T ss_dssp CGGGCSEEECTTCBCBT--TBCCSCCTTCTTCCEEECTTSCCC-------CC-TTCCCCTTCCEEECCSSC-CCSCTHHH
T ss_pred CCccCeEEEccCCcCCh--hHHHHHHhhcCCCcEEECcCCCCC-------Cc-hhhhcCCCCCEEECCCCc-ccchHHHH
Confidence 45778888888876320 235666788999999999966553 33 567889999999999999 655 8888
Q ss_pred hhccCCCcEEeccCcccccccC--ccccCCCCccEeecCCCcccccccc----cCCCcccccccCce
Q 002115 641 LCELYNLEHLDISYCRNLRELP--QGIGKLRKLMYLENDGTYSLRYLPV----GIGELIRLRIVKEF 701 (965)
Q Consensus 641 i~~L~~L~~LdL~~~~~l~~lP--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~l~ 701 (965)
++++++|++|++++|. +..+| ..+..+++|++|++++| .+..+|. .++.+++|+.|++.
T Consensus 84 ~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 8889999999999998 66654 77889999999999998 4455554 57778888888764
No 128
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.19 E-value=3.4e-11 Score=126.15 Aligned_cols=146 Identities=21% Similarity=0.209 Sum_probs=114.0
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhc
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIEN 619 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~ 619 (965)
..++.+.+.++.+..++ .+..+++|+.|.+.++.. .. ++. +..+++|++|+|++|.+ ..+|.. ..
T Consensus 41 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i---~~-~~~-l~~l~~L~~L~L~~N~l-------~~l~~~-~~ 105 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQI---SD-LSP-LKDLTKLEELSVNRNRL-------KNLNGI-PS 105 (263)
T ss_dssp TTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCC---CC-CGG-GTTCSSCCEEECCSSCC-------SCCTTC-CC
T ss_pred CcCcEEECcCCCcccch--HHhhCCCCCEEECCCCcc---CC-Chh-hccCCCCCEEECCCCcc-------CCcCcc-cc
Confidence 46778888888777555 344889999999998863 33 333 88999999999996654 344432 23
Q ss_pred cCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccC
Q 002115 620 LLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVK 699 (965)
Q Consensus 620 L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 699 (965)
.+|++|+|++|. ++.+|. +.++++|++|++++|. +..+| .+..+++|++|++++|. +..+ ..+..+++|+.|+
T Consensus 106 -~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 106 -ACLSRLFLDNNE-LRDTDS-LIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWID 178 (263)
T ss_dssp -SSCCEEECCSSC-CSBSGG-GTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSC-CCBC-TTSTTCCCCCEEE
T ss_pred -CcccEEEccCCc-cCCChh-hcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCc-Ccch-HHhccCCCCCEEe
Confidence 889999999998 887774 8999999999999998 77776 68889999999999984 4444 6688899999999
Q ss_pred ceEecCcc
Q 002115 700 EFVVGGGY 707 (965)
Q Consensus 700 l~~~~~~~ 707 (965)
+..+....
T Consensus 179 l~~N~~~~ 186 (263)
T 1xeu_A 179 LTGQKCVN 186 (263)
T ss_dssp EEEEEEEC
T ss_pred CCCCcccC
Confidence 98887665
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.18 E-value=2.3e-11 Score=134.22 Aligned_cols=104 Identities=20% Similarity=0.181 Sum_probs=63.4
Q ss_pred CccceEEcCcccccccccchhhHHh-hhh-ccCCCcEEEeCCccCccccc-hhhhccCCCcEEeccCcccccccCc-ccc
Q 002115 591 TCLRALTLGVHSLRLCENCIKEVRT-NIE-NLLHLKYLNLAHQREIEKLP-ETLCELYNLEHLDISYCRNLRELPQ-GIG 666 (965)
Q Consensus 591 ~~Lr~L~L~~n~l~~~~~~i~~lp~-~i~-~L~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~LdL~~~~~l~~lP~-~i~ 666 (965)
..+++|+|++|.+ ..++. .+. ++.+|++|+|++|. +..+| ..|.++++|++|+|++|. +..+|. .+.
T Consensus 39 ~~l~~L~Ls~N~l-------~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 109 (361)
T 2xot_A 39 SYTALLDLSHNNL-------SRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFS 109 (361)
T ss_dssp TTCSEEECCSSCC-------CEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTT
T ss_pred CCCCEEECCCCCC-------CccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCc-CCcCCHHHhC
Confidence 3467777774443 33333 344 67777777777777 55555 357777777777777776 555544 366
Q ss_pred CCCCccEeecCCCcccccccccCCCcccccccCceEe
Q 002115 667 KLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVV 703 (965)
Q Consensus 667 ~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~ 703 (965)
.+++|++|++++|......|..+..+++|+.|++..+
T Consensus 110 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence 7777777777777443333445566666666655444
No 130
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.17 E-value=4.4e-11 Score=122.51 Aligned_cols=131 Identities=24% Similarity=0.337 Sum_probs=111.0
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHh-hhh
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRT-NIE 618 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~-~i~ 618 (965)
..++.|.+..+.+..+....+..+++|+.|.+.++. +..+.+..|..+++|++|+|++|.+ ..+|. .+.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~---l~~i~~~~~~~l~~L~~L~Ls~N~l-------~~l~~~~~~ 109 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ---LGALPVGVFDSLTQLTVLDLGTNQL-------TVLPSAVFD 109 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCC-------CCCCTTTTT
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC---CCCcChhhcccCCCcCEEECCCCcC-------CccChhHhC
Confidence 678999999999887766667799999999999987 4444556689999999999996654 44544 468
Q ss_pred ccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCc-cccCCCCccEeecCCCccc
Q 002115 619 NLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQ-GIGKLRKLMYLENDGTYSL 682 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~ 682 (965)
.+++|++|+|++|. +..+|..+.++++|++|+|++|. +..+|. .+..+++|++|++++|...
T Consensus 110 ~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 110 RLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 99999999999999 88999999999999999999998 777775 4788999999999999543
No 131
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.16 E-value=9.8e-10 Score=112.21 Aligned_cols=185 Identities=11% Similarity=0.004 Sum_probs=117.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccc-cceEEEEcCCCCCHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNF-EKRIWVCVSEPFDEFRIARAI 256 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i 256 (965)
..++|+++.++.+.+++... ....+.|+|.+|+|||++|+.+++... ...+ ...+.+..+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 46899999999999998643 222489999999999999999987521 1122 223444544444333322222
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchH-HHh-hcCCcc
Q 002115 257 IESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEI-VAR-CMRSTN 334 (965)
Q Consensus 257 ~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~-~~~~~~ 334 (965)
. .+..... ...+++.+||+||++......++.+...+.....+.++|+||+... +.. ......
T Consensus 90 ~-~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 K-EFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp H-HHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred H-HHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 1 1111000 0136789999999977554556667766666566788898887643 111 112234
Q ss_pred eEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHH
Q 002115 335 VIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIA 388 (965)
Q Consensus 335 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 388 (965)
.+.+.+++.++..+++.+.+........ .+..+.|++.++|.|..+..+.
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 8899999999999999887643221111 2346778899999998655443
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=2.3e-10 Score=124.48 Aligned_cols=290 Identities=10% Similarity=0.107 Sum_probs=153.5
Q ss_pred hcCceeEEEecccccccccccchHHhhc-CCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccch-
Q 002115 562 HVKRLRSLLVESYEYSWSSEVLPQLFDK-LTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPE- 639 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~-l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~- 639 (965)
.+.+++.|.+.+.- ...--..+.. +++|++|||++|.+.. . ..+ -+.++.++++.+..+. +|+
T Consensus 23 ~~~~l~~L~l~g~i----~~~~~~~l~~~l~~L~~LdLs~n~i~~--~---~~~--~~~~~~~~~~~~~~~~----I~~~ 87 (329)
T 3sb4_A 23 EANSITHLTLTGKL----NAEDFRHLRDEFPSLKVLDISNAEIKM--Y---SGK--AGTYPNGKFYIYMANF----VPAY 87 (329)
T ss_dssp HHHHCSEEEEEEEE----CHHHHHHHHHSCTTCCEEEEEEEEECC--E---EES--SSSSGGGCCEEECTTE----ECTT
T ss_pred hhCceeEEEEeccc----cHHHHHHHHHhhccCeEEecCcceeEE--e---cCc--cccccccccccccccc----cCHH
Confidence 45678888887642 1101122444 7889999999666531 0 111 1122224555555553 333
Q ss_pred hhhc--------cCCCcEEeccCcccccccCcc-ccCCCCccEeecCCCcccccccccCCCcccccccCceEecCccCCC
Q 002115 640 TLCE--------LYNLEHLDISYCRNLRELPQG-IGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRA 710 (965)
Q Consensus 640 ~i~~--------L~~L~~LdL~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~ 710 (965)
.|.+ +.+|+.|+|.+ . +..++.. |..+++|+.|++.+|....--+..|..+.++..+.......
T Consensus 88 aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~----- 160 (329)
T 3sb4_A 88 AFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA----- 160 (329)
T ss_dssp TTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHH-----
T ss_pred HhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhh-----
Confidence 5666 88899888887 4 6666654 77888899998888743332233355544444443221000
Q ss_pred CCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCC-ceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCC
Q 002115 711 CSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLS-NLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPP 789 (965)
Q Consensus 711 ~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 789 (965)
...+..+.. ..+..+..|+ .+.+.... . ....+...-..+.
T Consensus 161 -----~~~~~~i~~-----------------~~f~~~~~L~~~i~~~~~~---~-------------l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 161 -----YRFKNRWEH-----------------FAFIEGEPLETTIQVGAMG---K-------------LEDEIMKAGLQPR 202 (329)
T ss_dssp -----HHTSTTTTT-----------------SCEEESCCCEEEEEECTTC---C-------------HHHHHHHTTCCGG
T ss_pred -----hhccccccc-----------------cccccccccceeEEecCCC---c-------------HHHHHhhcccCcc
Confidence 000000000 1122222332 12221110 0 1112222222345
Q ss_pred CCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC--CCCCCCcceeeecCCCCceEeCccccCCCCCCCC
Q 002115 790 NLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP--LGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDG 867 (965)
Q Consensus 790 ~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~--l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 867 (965)
++..+.+.++.... ........+++|+.|+|++|.+.. +|. |.++++|+.|.|.++ ++.++...+.
T Consensus 203 ~~~~l~~~~~l~~~--~~~~l~~~~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~------- 270 (329)
T 3sb4_A 203 DINFLTIEGKLDNA--DFKLIRDYMPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN--LKTIGQRVFS------- 270 (329)
T ss_dssp GCSEEEEEECCCHH--HHHHHHHHCTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT--CCEECTTTTT-------
T ss_pred ccceEEEeeeecHH--HHHHHHHhcCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc--cceehHHHhh-------
Confidence 66667766653221 110111247788888888775443 333 778888888888663 6666554432
Q ss_pred ccccCCcccc-cccccccccccccCcccccccccccCcccceEeeccCccCcCCC-cCCCCCCCCCeEeE
Q 002115 868 SSVIAFPKLK-QLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALP-DRLLQKTTLQALTI 935 (965)
Q Consensus 868 ~~~~~f~~L~-~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l 935 (965)
++++|+ .+.+.+ +++.+. +..|..+++|+.|++.+|. +..++ ..+.++++|+.|+.
T Consensus 271 ----~~~~L~~~l~l~~--~l~~I~-----~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 271 ----NCGRLAGTLELPA--SVTAIE-----FGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ----TCTTCCEEEEECT--TCCEEC-----TTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEEC
T ss_pred ----CChhccEEEEEcc--cceEEc-----hhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhcc
Confidence 566777 777654 233321 2456678899999988775 55555 46788889988863
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.12 E-value=6.4e-11 Score=115.86 Aligned_cols=129 Identities=22% Similarity=0.204 Sum_probs=96.8
Q ss_pred hcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchh-
Q 002115 562 HVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPET- 640 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~- 640 (965)
++.+|+.|.+.++... . +|......++|++|+|++|.++ .+ ..++.+++|++|+|++|. +..+|..
T Consensus 17 ~~~~L~~L~l~~n~l~---~-i~~~~~~~~~L~~L~Ls~N~l~-------~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~ 83 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP---V-IENLGATLDQFDAIDFSDNEIR-------KL-DGFPLLRRLKTLLVNNNR-ICRIGEGL 83 (176)
T ss_dssp CTTSCEEEECTTSCCC---S-CCCGGGGTTCCSEEECCSSCCC-------EE-CCCCCCSSCCEEECCSSC-CCEECSCH
T ss_pred CcCCceEEEeeCCCCc---h-hHHhhhcCCCCCEEECCCCCCC-------cc-cccccCCCCCEEECCCCc-ccccCcch
Confidence 6678888888887643 2 3432333348999999966553 33 567888899999999998 7777754
Q ss_pred hhccCCCcEEeccCcccccccCc--cccCCCCccEeecCCCccccccccc----CCCcccccccCceEecC
Q 002115 641 LCELYNLEHLDISYCRNLRELPQ--GIGKLRKLMYLENDGTYSLRYLPVG----IGELIRLRIVKEFVVGG 705 (965)
Q Consensus 641 i~~L~~L~~LdL~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~L~l~~~~~ 705 (965)
+..+++|++|++++|. +..+|. .+..+++|++|++++| .+..+|.. ++.+++|+.|++..+..
T Consensus 84 ~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 84 DQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 4889999999999988 777876 6888899999999888 44566764 77888888888776654
No 134
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.12 E-value=6.9e-11 Score=120.18 Aligned_cols=130 Identities=22% Similarity=0.337 Sum_probs=109.9
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhh-hh
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTN-IE 618 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~-i~ 618 (965)
..++.|.+..+.+..++...+..+++|+.|.+.++. +..+.|..|.++++|++|+|++|.+ ..+|.. +.
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls~N~l-------~~l~~~~f~ 101 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ---ISELAPDAFQGLRSLNSLVLYGNKI-------TELPKSLFE 101 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC---CCEECTTTTTTCSSCCEEECCSSCC-------CCCCTTTTT
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc---CCCcCHHHhhCCcCCCEEECCCCcC-------CccCHhHcc
Confidence 578999999999887777777789999999999987 4455677899999999999995554 556654 67
Q ss_pred ccCCCcEEEeCCccCcccc-chhhhccCCCcEEeccCcccccccCcc-ccCCCCccEeecCCCcc
Q 002115 619 NLLHLKYLNLAHQREIEKL-PETLCELYNLEHLDISYCRNLRELPQG-IGKLRKLMYLENDGTYS 681 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~LdL~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~ 681 (965)
.+++|++|+|++|. +..+ |..|.++++|++|+|++|. +..+|.. +..+++|++|++++|..
T Consensus 102 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 102 GLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 89999999999999 6665 5689999999999999998 7777654 88899999999999943
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.12 E-value=1.5e-11 Score=147.84 Aligned_cols=138 Identities=20% Similarity=0.179 Sum_probs=107.7
Q ss_pred hhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCcc
Q 002115 556 SISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIE 635 (965)
Q Consensus 556 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~ 635 (965)
+...+..++.|+.|.+.++.. .. +|..+.++++|++|+|++ +.+..+|..|++|++|++|+|++|. +.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l---~~-l~~~~~~l~~L~~L~Ls~-------N~l~~lp~~~~~l~~L~~L~Ls~N~-l~ 283 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQI---FN-ISANIFKYDFLTRLYLNG-------NSLTELPAEIKNLSNLRVLDLSHNR-LT 283 (727)
T ss_dssp ------CCCCCCEEECTTSCC---SC-CCGGGGGCCSCSCCBCTT-------SCCSCCCGGGGGGTTCCEEECTTSC-CS
T ss_pred ChhhhccCCCCcEEECCCCCC---CC-CChhhcCCCCCCEEEeeC-------CcCcccChhhhCCCCCCEEeCcCCc-CC
Confidence 444555899999999999874 33 455566999999999995 4456789999999999999999999 88
Q ss_pred ccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccc-cccCceEecCc
Q 002115 636 KLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRL-RIVKEFVVGGG 706 (965)
Q Consensus 636 ~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L-~~L~l~~~~~~ 706 (965)
.+|..|++|++|++|+|++|. +..+|..|+.|++|++|+|++|.....+|..+..+... ..|++..+...
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred ccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc
Confidence 999999999999999999998 88999999999999999999997666667666544221 23445555444
No 136
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.12 E-value=5.3e-11 Score=115.52 Aligned_cols=134 Identities=22% Similarity=0.212 Sum_probs=109.7
Q ss_pred ceEEEEEEEeCCCc--cchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhh
Q 002115 540 KKVLHLMLNLDGRH--LVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNI 617 (965)
Q Consensus 540 ~~~r~L~l~~~~~~--~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i 617 (965)
..++++.+..+.+. .++.. +..+++|+.|.+.++....+ ..|..+++|++|+|++|.++ ..+|..+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~N~l~------~~~~~~~ 91 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-----SNLPKLPKLKKLELSENRIF------GGLDMLA 91 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-----SSCCCCSSCCEEEEESCCCC------SCCCHHH
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-----hhhccCCCCCEEECcCCcCc------hHHHHHH
Confidence 57889999988876 45544 44899999999999874332 44889999999999976654 2267777
Q ss_pred hccCCCcEEEeCCccCccccc--hhhhccCCCcEEeccCcccccccCc----cccCCCCccEeecCCCccccccccc
Q 002115 618 ENLLHLKYLNLAHQREIEKLP--ETLCELYNLEHLDISYCRNLRELPQ----GIGKLRKLMYLENDGTYSLRYLPVG 688 (965)
Q Consensus 618 ~~L~~Lr~L~L~~~~~i~~lp--~~i~~L~~L~~LdL~~~~~l~~lP~----~i~~L~~L~~L~l~~~~~~~~~p~~ 688 (965)
.++++|++|+|++|. ++.+| ..+.++++|++|++++|. +..+|. .+..+++|++|++++| ....+|..
T Consensus 92 ~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~ 165 (168)
T 2ell_A 92 EKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPDS 165 (168)
T ss_dssp HHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCSS
T ss_pred hhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC-Chhhcccc
Confidence 889999999999999 88877 689999999999999998 778876 6899999999999998 45556654
No 137
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.11 E-value=1.1e-10 Score=118.64 Aligned_cols=131 Identities=18% Similarity=0.228 Sum_probs=107.8
Q ss_pred ceEEEEEEEeCCCccc-hhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhH-Hhhh
Q 002115 540 KKVLHLMLNLDGRHLV-SISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEV-RTNI 617 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~l-p~~i 617 (965)
..++.|.+..+.+..+ +...+..+++|+.|.+.++. +..+.+..|.++++|++|+|++|.++ .+ |..+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~---i~~i~~~~~~~l~~L~~L~Ls~N~l~-------~~~~~~~ 101 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK---ITDIEEGAFEGASGVNEILLTSNRLE-------NVQHKMF 101 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCC-------CCCGGGG
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc---CCEECHHHhCCCCCCCEEECCCCccC-------ccCHhHh
Confidence 4567899999988765 34556699999999999987 44545667999999999999966653 44 4568
Q ss_pred hccCCCcEEEeCCccCcccc-chhhhccCCCcEEeccCccccccc-CccccCCCCccEeecCCCccc
Q 002115 618 ENLLHLKYLNLAHQREIEKL-PETLCELYNLEHLDISYCRNLREL-PQGIGKLRKLMYLENDGTYSL 682 (965)
Q Consensus 618 ~~L~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~LdL~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~ 682 (965)
..+++|++|+|++|. +..+ |..+.++++|++|+|++|. +..+ |..+..+++|++|++++|...
T Consensus 102 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 102 KGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 899999999999999 6655 6789999999999999998 6655 778999999999999999543
No 138
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.11 E-value=3.1e-11 Score=133.15 Aligned_cols=129 Identities=19% Similarity=0.209 Sum_probs=64.9
Q ss_pred ceeEEEecccccccccccchHHhh-cCCccceEEcCcccccccccchhhHH-hhhhccCCCcEEEeCCccCccccch-hh
Q 002115 565 RLRSLLVESYEYSWSSEVLPQLFD-KLTCLRALTLGVHSLRLCENCIKEVR-TNIENLLHLKYLNLAHQREIEKLPE-TL 641 (965)
Q Consensus 565 ~Lr~L~l~~~~~~~~~~~l~~~~~-~l~~Lr~L~L~~n~l~~~~~~i~~lp-~~i~~L~~Lr~L~L~~~~~i~~lp~-~i 641 (965)
.++.|.+.++. +....+..|. ++++|++|+|++|.+ ..++ ..+.++++|++|+|++|. +..+|. .|
T Consensus 40 ~l~~L~Ls~N~---l~~l~~~~~~~~l~~L~~L~L~~N~i-------~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 108 (361)
T 2xot_A 40 YTALLDLSHNN---LSRLRAEWTPTRLTNLHSLLLSHNHL-------NFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLF 108 (361)
T ss_dssp TCSEEECCSSC---CCEECTTSSSSCCTTCCEEECCSSCC-------CEECTTTTTTCTTCCEEECCSSC-CCEECTTTT
T ss_pred CCCEEECCCCC---CCccChhhhhhcccccCEEECCCCcC-------CccChhhccCCCCCCEEECCCCc-CCcCCHHHh
Confidence 35555555554 2232333344 555666666653333 2222 345555666666666665 444443 45
Q ss_pred hccCCCcEEeccCccccccc-CccccCCCCccEeecCCCcccccccccC----CCcccccccCceEecCc
Q 002115 642 CELYNLEHLDISYCRNLREL-PQGIGKLRKLMYLENDGTYSLRYLPVGI----GELIRLRIVKEFVVGGG 706 (965)
Q Consensus 642 ~~L~~L~~LdL~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~p~~i----~~l~~L~~L~l~~~~~~ 706 (965)
.++++|++|+|++|. +..+ |..+..+++|++|++++| .+..+|..+ ..+++|+.|++..|.+.
T Consensus 109 ~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 109 SDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp TTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 556666666666655 3333 444555666666666555 334444432 34555555555555443
No 139
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.04 E-value=1.3e-10 Score=110.21 Aligned_cols=125 Identities=25% Similarity=0.291 Sum_probs=102.4
Q ss_pred ceEEEEEEEeCCCc--cchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhh
Q 002115 540 KKVLHLMLNLDGRH--LVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNI 617 (965)
Q Consensus 540 ~~~r~L~l~~~~~~--~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i 617 (965)
..++++.+.++.+. .++. .+..+++|+.|.+.++....+ ..+..+++|++|+|++|.++ ..+|..+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~n~i~------~~~~~~~ 84 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-----ANLPKLNKLKKLELSDNRVS------GGLEVLA 84 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-----TTCCCCTTCCEEECCSSCCC------SCTHHHH
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-----hhhhcCCCCCEEECCCCccc------chHHHHh
Confidence 57888998888776 4454 444899999999999874332 45889999999999966654 2278888
Q ss_pred hccCCCcEEEeCCccCccccc--hhhhccCCCcEEeccCcccccccCc----cccCCCCccEeecCC
Q 002115 618 ENLLHLKYLNLAHQREIEKLP--ETLCELYNLEHLDISYCRNLRELPQ----GIGKLRKLMYLENDG 678 (965)
Q Consensus 618 ~~L~~Lr~L~L~~~~~i~~lp--~~i~~L~~L~~LdL~~~~~l~~lP~----~i~~L~~L~~L~l~~ 678 (965)
+.+++|++|++++|. ++.+| ..++.+++|++|++++|. +..+|. .+..+++|++|++++
T Consensus 85 ~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 85 EKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 889999999999999 88765 789999999999999998 777776 688999999998753
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.00 E-value=2.9e-10 Score=132.28 Aligned_cols=80 Identities=31% Similarity=0.401 Sum_probs=40.7
Q ss_pred CcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccccCCCcccccccCceE
Q 002115 623 LKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFV 702 (965)
Q Consensus 623 Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 702 (965)
|++|+|++|. ++.+|. ++++++|++|+|++|. +..+|..++.+++|++|++++| .+..+| .++++++|+.|++..
T Consensus 443 L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCC-CCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCC
Confidence 5555555555 444554 5555555555555554 4455555555555555555555 233344 455555555555555
Q ss_pred ecCcc
Q 002115 703 VGGGY 707 (965)
Q Consensus 703 ~~~~~ 707 (965)
|.+..
T Consensus 518 N~l~~ 522 (567)
T 1dce_A 518 NRLQQ 522 (567)
T ss_dssp SCCCS
T ss_pred CCCCC
Confidence 44443
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.00 E-value=3e-12 Score=128.13 Aligned_cols=109 Identities=21% Similarity=0.250 Sum_probs=59.3
Q ss_pred hHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCc
Q 002115 584 PQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQ 663 (965)
Q Consensus 584 ~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~ 663 (965)
|..|..+++|++|+|++|.+ ..+| .+.++++|++|++++|. +..+|..+..+++|++|++++|. +..+|
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l-------~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~- 109 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNI-------EKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS- 109 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEE-------SCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH-
T ss_pred hHHHhcCCCCCEEECCCCCC-------cccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC-
Confidence 33556666666666663332 3344 55566666666666665 55566555555666666666665 44554
Q ss_pred cccCCCCccEeecCCCcccccccc--cCCCcccccccCceEec
Q 002115 664 GIGKLRKLMYLENDGTYSLRYLPV--GIGELIRLRIVKEFVVG 704 (965)
Q Consensus 664 ~i~~L~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~l~~~~ 704 (965)
.+..+++|++|++++| .+..+|. .+..+++|+.|++..+.
T Consensus 110 ~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 4555666666666655 2333322 34555555555554443
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.99 E-value=5.7e-10 Score=110.69 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=44.7
Q ss_pred hhccCCCcEEEeCCccCcccc-chhhhccCCCcEEeccCcccccccCc-cccCCCCccEeecCCCcccccccccCCCccc
Q 002115 617 IENLLHLKYLNLAHQREIEKL-PETLCELYNLEHLDISYCRNLRELPQ-GIGKLRKLMYLENDGTYSLRYLPVGIGELIR 694 (965)
Q Consensus 617 i~~L~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~LdL~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~ 694 (965)
++.+++|++|+|++|. ++.+ |..|.++++|++|+|++|. +..+|. .+..+++|++|++++|......|..++.+++
T Consensus 50 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 127 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127 (192)
T ss_dssp GGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT
T ss_pred cccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCC
Confidence 4555555555555555 3333 4455555555555555555 333332 2555555555555555443344455555555
Q ss_pred ccccCceEec
Q 002115 695 LRIVKEFVVG 704 (965)
Q Consensus 695 L~~L~l~~~~ 704 (965)
|+.|++..|.
T Consensus 128 L~~L~L~~N~ 137 (192)
T 1w8a_A 128 LTSLNLASNP 137 (192)
T ss_dssp CCEEECTTCC
T ss_pred CCEEEeCCCC
Confidence 5555554443
No 143
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.98 E-value=2.5e-09 Score=116.07 Aligned_cols=275 Identities=16% Similarity=0.120 Sum_probs=145.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
..++|++..++.+..++..... .......|.|+|.+|+|||++|+.+++. ... ..+++..+......++.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~l~---- 81 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGDLA---- 81 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHHHH----
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHHHH----
Confidence 5699999999998888753211 0113357889999999999999999875 222 23355444332222221
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC------------------CCcEEEE
Q 002115 258 ESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL------------------HESKILI 319 (965)
Q Consensus 258 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ilv 319 (965)
..+...+ .++.+|++|++..........+...+.... ++..+|.
T Consensus 82 -----------------~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 82 -----------------AILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp -----------------HHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred -----------------HHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 1111111 345689999997654334444554443221 2346666
Q ss_pred eecchH-HHhhc-CC-cceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhhcC---
Q 002115 320 TTRKEI-VARCM-RS-TNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLLQS--- 393 (965)
Q Consensus 320 TtR~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~--- 393 (965)
||.... +...+ .- ...+.+.+++.++..+++...+...... .. .+....+++.++|.|-.+..+...+..
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~-~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR-IT---EEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC-CC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC-CC---HHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 665432 11111 11 2578999999999999998876432221 11 245678899999999887766554321
Q ss_pred ---C--CCHHHHHHHHhhhhhh---hhhhhhhhhhHHHHhhcCCcHhHHHHHhHhcccCCCceecHHHHH----HHHHhC
Q 002115 394 ---R--NTEKEWQNILESEIWE---LEEVERGLLAPLLLSYNELPSKIKQCFTYCAIFPKDYQIQKKELI----NLWMAQ 461 (965)
Q Consensus 394 ---~--~~~~~w~~~l~~~~~~---~~~~~~~i~~~l~~sy~~L~~~lk~cfl~~~~fp~~~~i~~~~li----~~w~ae 461 (965)
. -+.+....++...... +...+..+...+.-.|..=|.....+-..+++ ++..+. .+-+..
T Consensus 220 ~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi-------~~~tl~~~l~~~~i~~ 292 (324)
T 1hqc_A 220 VAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSE-------DPGTLEEVHEPYLIRQ 292 (324)
T ss_dssp TTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTS-------CHHHHHHHTHHHHHHT
T ss_pred HhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCC-------CHHHHHHHHhHHHHHh
Confidence 1 1344444433321100 00111112222222222111122222222222 233322 235567
Q ss_pred CccccC-CCCcHHHHHHHHHH-HHHhCCCccc
Q 002115 462 GYLSKK-GTKEMEDIGEEYFN-ILASRSFFQD 491 (965)
Q Consensus 462 g~i~~~-~~~~~e~~~~~~l~-~L~~~sl~~~ 491 (965)
|||... .+....+.|.+||+ ++.+|+|||+
T Consensus 293 ~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 293 GLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp TSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred cchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 888643 34567788999997 9999999885
No 144
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.97 E-value=6.6e-09 Score=112.72 Aligned_cols=186 Identities=15% Similarity=0.111 Sum_probs=117.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccc-cceEEEEcCCCCCHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNF-EKRIWVCVSEPFDEFRIARAI 256 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i 256 (965)
..++|++..++.+.+++... ..+.+.|+|++|+||||+|+.+++... ...+ ...+++..+....... .+++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HHHH
Confidence 46899999999999998643 222389999999999999999987621 1112 2344555444333222 2222
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHh-CCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchH-HH-hhcCCc
Q 002115 257 IESLTGSASNFGEFQSLMQHIQECV-EGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEI-VA-RCMRST 333 (965)
Q Consensus 257 ~~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~-~~~~~~ 333 (965)
++.+.... ..+ .+++.+||+||++......++.+...+.....++.+|+||+... +. ......
T Consensus 93 ~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 22221000 011 35689999999987555556667776666556778888886532 11 112234
Q ss_pred ceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHh-HHHHHH
Q 002115 334 NVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLA-AKTIAS 389 (965)
Q Consensus 334 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPla-i~~~~~ 389 (965)
..+++.+++.++..+++...+...+.... .+....|++.|+|.|.. +..+..
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVKYT----NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 58999999999999999887632221111 23467899999999954 444433
No 145
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.97 E-value=2.3e-10 Score=111.88 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=87.9
Q ss_pred hhcCCccceEEcCcccccccccchhhHHhhhhccC-CCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCccc
Q 002115 587 FDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLL-HLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGI 665 (965)
Q Consensus 587 ~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~-~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i 665 (965)
+.++..|+.|++++|.+ ..+| .+..+. +|++|+|++|. +..+ ..++++++|++|++++|. +..+|.++
T Consensus 15 ~~~~~~L~~L~l~~n~l-------~~i~-~~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~ 83 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKI-------PVIE-NLGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGL 83 (176)
T ss_dssp EECTTSCEEEECTTSCC-------CSCC-CGGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSC-CCEECSCH
T ss_pred cCCcCCceEEEeeCCCC-------chhH-HhhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCc-ccccCcch
Confidence 56788999999996554 4444 355555 99999999999 7777 469999999999999998 78888775
Q ss_pred -cCCCCccEeecCCCcccccccc--cCCCcccccccCceEecCc
Q 002115 666 -GKLRKLMYLENDGTYSLRYLPV--GIGELIRLRIVKEFVVGGG 706 (965)
Q Consensus 666 -~~L~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~l~~~~~~ 706 (965)
..+++|++|++++| .+..+|. .++.+++|+.|++..+...
T Consensus 84 ~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 84 DQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp HHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred hhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 89999999999999 5567776 7888888888888766554
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.95 E-value=8.2e-12 Score=124.94 Aligned_cols=115 Identities=20% Similarity=0.167 Sum_probs=62.2
Q ss_pred hhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccCcccc
Q 002115 587 FDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELPQGIG 666 (965)
Q Consensus 587 ~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~ 666 (965)
+.....+..++++.+.++.....+..+|..++.+++|++|+|++|. +..+| .+.++++|++|++++|. +..+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhh
Confidence 3444555555555555443333444555555566666666666665 55555 45556666666666655 455555555
Q ss_pred CCCCccEeecCCCcccccccccCCCcccccccCceEecCc
Q 002115 667 KLRKLMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGG 706 (965)
Q Consensus 667 ~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~ 706 (965)
.+++|++|++++| .+..+| .++.+++|+.|++..+...
T Consensus 91 ~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~N~i~ 128 (198)
T 1ds9_A 91 VADTLEELWISYN-QIASLS-GIEKLVNLRVLYMSNNKIT 128 (198)
T ss_dssp HHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEEEESEEECC
T ss_pred cCCcCCEEECcCC-cCCcCC-ccccCCCCCEEECCCCcCC
Confidence 5556666666555 333344 4555555666655555543
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.94 E-value=1.9e-09 Score=106.92 Aligned_cols=103 Identities=25% Similarity=0.354 Sum_probs=52.5
Q ss_pred ccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccc-hhhhccCCCcEEeccCcccccccCc-cccCCC
Q 002115 592 CLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLP-ETLCELYNLEHLDISYCRNLRELPQ-GIGKLR 669 (965)
Q Consensus 592 ~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~LdL~~~~~l~~lP~-~i~~L~ 669 (965)
.|++|+|++ +.+..+|..+.++.+|++|+|++|. +..+| ..|.++++|++|+|++|. +..+|. .+..++
T Consensus 32 ~l~~L~L~~-------n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~ 102 (193)
T 2wfh_A 32 DVTELYLDG-------NQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLK 102 (193)
T ss_dssp TCCEEECCS-------SCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCT
T ss_pred CCCEEECCC-------CcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCC
Confidence 455555552 2233444555555556666665555 44443 345555556666665555 443332 355555
Q ss_pred CccEeecCCCcccccccc-cCCCcccccccCceEec
Q 002115 670 KLMYLENDGTYSLRYLPV-GIGELIRLRIVKEFVVG 704 (965)
Q Consensus 670 ~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~ 704 (965)
+|++|++++| .+..+|. .+..+++|+.|++..|.
T Consensus 103 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 103 SLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 5666665555 2333443 24555555555554443
No 148
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.92 E-value=1.5e-09 Score=107.64 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=83.5
Q ss_pred ceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccCCCcEEeccCcccccccC-ccccCCCCcc
Q 002115 594 RALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELYNLEHLDISYCRNLRELP-QGIGKLRKLM 672 (965)
Q Consensus 594 r~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~LdL~~~~~l~~lP-~~i~~L~~L~ 672 (965)
++++++ ++.+..+|..+. .+|++|+|++|. +..+|..+.++++|++|++++|. +..+| ..|..+++|+
T Consensus 13 ~~l~~~-------~~~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~ 81 (193)
T 2wfh_A 13 TVVRCS-------NKGLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLL 81 (193)
T ss_dssp TEEECT-------TSCCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CEEEcC-------CCCCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCC
Confidence 578888 445566776553 689999999999 88999999999999999999998 66665 4589999999
Q ss_pred EeecCCCcccccccccCCCcccccccCceEecCcc
Q 002115 673 YLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGY 707 (965)
Q Consensus 673 ~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~ 707 (965)
+|++++|......|..+..+++|+.|++..+.+..
T Consensus 82 ~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV 116 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred EEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe
Confidence 99999995444444568999999999887765543
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.92 E-value=1.8e-09 Score=105.63 Aligned_cols=121 Identities=24% Similarity=0.346 Sum_probs=69.8
Q ss_pred EEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHh-hhhccCCC
Q 002115 545 LMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRT-NIENLLHL 623 (965)
Q Consensus 545 L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~-~i~~L~~L 623 (965)
+.+..+++..++... .++|+.|.+.++. +....+..|..+++|++|+|++|.+ ..+|. .++.+++|
T Consensus 12 l~~~~~~l~~~p~~~---~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L 78 (177)
T 2o6r_A 12 IRCNSKGLTSVPTGI---PSSATRLELESNK---LQSLPHGVFDKLTQLTKLSLSQNQI-------QSLPDGVFDKLTKL 78 (177)
T ss_dssp EECCSSCCSSCCTTC---CTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCC-------CCCCTTTTTTCTTC
T ss_pred EEecCCCCccCCCCC---CCCCcEEEeCCCc---ccEeCHHHhcCcccccEEECCCCcc-------eEeChhHccCCCcc
Confidence 344444444344332 2566677766655 2333444456667777777774433 33332 35666777
Q ss_pred cEEEeCCccCccccch-hhhccCCCcEEeccCcccccccCcc-ccCCCCccEeecCCCc
Q 002115 624 KYLNLAHQREIEKLPE-TLCELYNLEHLDISYCRNLRELPQG-IGKLRKLMYLENDGTY 680 (965)
Q Consensus 624 r~L~L~~~~~i~~lp~-~i~~L~~L~~LdL~~~~~l~~lP~~-i~~L~~L~~L~l~~~~ 680 (965)
++|+|++|. ++.+|. .+.++++|++|++++|. +..+|.. +..+++|++|++++|.
T Consensus 79 ~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 79 TILYLHENK-LQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCC-ccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 777777776 555554 35667777777777766 5556554 3556777777776663
No 150
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.91 E-value=1.1e-09 Score=108.51 Aligned_cols=127 Identities=14% Similarity=0.144 Sum_probs=97.1
Q ss_pred ceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchh--hhccCCCcEEeccCccccccc-CccccCCCC
Q 002115 594 RALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPET--LCELYNLEHLDISYCRNLREL-PQGIGKLRK 670 (965)
Q Consensus 594 r~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~--i~~L~~L~~LdL~~~~~l~~l-P~~i~~L~~ 670 (965)
++|+++ ++.+..+|..+.. +|++|++++|. +..+|.. +.++++|++|+|++|. +..+ |..+..+++
T Consensus 11 ~~l~~s-------~~~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCT-------GRGLKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASH 79 (192)
T ss_dssp TEEECT-------TSCCSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTT
T ss_pred CEEEcC-------CCCcCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCccc
Confidence 678888 5555677776554 89999999999 8888763 8999999999999998 5554 778999999
Q ss_pred ccEeecCCCcccccccccCCCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCC
Q 002115 671 LMYLENDGTYSLRYLPVGIGELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNL 750 (965)
Q Consensus 671 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L 750 (965)
|++|++++|......|..++.+++|+.|++..+.+....+ ..+..+++|
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------------------------~~~~~l~~L 128 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-------------------------------GSFEHLNSL 128 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT-------------------------------TSSTTCTTC
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-------------------------------HHhhcCCCC
Confidence 9999999996555455568899999999887766543111 123455677
Q ss_pred CceEEEeeccCC
Q 002115 751 SNLELHFDHLRD 762 (965)
Q Consensus 751 ~~L~L~~~~l~~ 762 (965)
+.|+|++|.+..
T Consensus 129 ~~L~L~~N~l~c 140 (192)
T 1w8a_A 129 TSLNLASNPFNC 140 (192)
T ss_dssp CEEECTTCCBCC
T ss_pred CEEEeCCCCccC
Confidence 788888887664
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=2.6e-09 Score=116.12 Aligned_cols=288 Identities=14% Similarity=0.086 Sum_probs=157.2
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhc
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIEN 619 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~ 619 (965)
..+.+|.+.++-...........+++|+.|++.++....... .+ ..++.++.+.+..|.+. +..|.+
T Consensus 25 ~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~-~~---~~~~~~~~~~~~~~~I~---------~~aF~~ 91 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSG-KA---GTYPNGKFYIYMANFVP---------AYAFSN 91 (329)
T ss_dssp HHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEE-SS---SSSGGGCCEEECTTEEC---------TTTTEE
T ss_pred CceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecC-cc---ccccccccccccccccC---------HHHhcc
Confidence 467788887642211112222127889999999987431111 11 12223556666533221 134556
Q ss_pred --------cCCCcEEEeCCccCccccch-hhhccCCCcEEeccCcccccccCc-cccCCCCccEeecCCCcccccccccC
Q 002115 620 --------LLHLKYLNLAHQREIEKLPE-TLCELYNLEHLDISYCRNLRELPQ-GIGKLRKLMYLENDGTYSLRYLPVGI 689 (965)
Q Consensus 620 --------L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~LdL~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~p~~i 689 (965)
+.+|+.|+|.+ . ++.+++ .|.++++|+.|++.+|. +..++. .|..+.++..+.........
T Consensus 92 ~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~------ 162 (329)
T 3sb4_A 92 VVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYR------ 162 (329)
T ss_dssp EETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHH------
T ss_pred cccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhh------
Confidence 99999999999 6 777775 69999999999999988 555544 46777777777654421100
Q ss_pred CCcccccccCceEecCccCCCCCccccccCCcCCcceeeccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCccccc
Q 002115 690 GELIRLRIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAG 769 (965)
Q Consensus 690 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~ 769 (965)
....+.. ..+..+..|+. .+.+.... .........-....++..+.+.++- ..
T Consensus 163 -~~~~i~~-------------~~f~~~~~L~~--~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l----~~---- 215 (329)
T 3sb4_A 163 -FKNRWEH-------------FAFIEGEPLET--TIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKL----DN---- 215 (329)
T ss_dssp -TSTTTTT-------------SCEEESCCCEE--EEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECC----CH----
T ss_pred -ccccccc-------------cccccccccce--eEEecCCC---cHHHHHhhcccCccccceEEEeeee----cH----
Confidence 0000100 01111111110 01111111 1111111111233456666666541 00
Q ss_pred CCCCChhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC--CCCCCCcc-eeeec
Q 002115 770 RRDNEEDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP--LGKLPSIE-VLEIY 846 (965)
Q Consensus 770 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~--l~~L~~L~-~L~L~ 846 (965)
.....+ ...+++|+.|+|.+|.... +|...|..+++|+.|+|.+| ...++. |.++++|+ .|.+.
T Consensus 216 -------~~~~~l--~~~~~~L~~l~L~~n~i~~--I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~ 282 (329)
T 3sb4_A 216 -------ADFKLI--RDYMPNLVSLDISKTNATT--IPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELP 282 (329)
T ss_dssp -------HHHHHH--HHHCTTCCEEECTTBCCCE--ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEEC
T ss_pred -------HHHHHH--HHhcCCCeEEECCCCCcce--ecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEc
Confidence 000011 1125788888888877766 66567778888888888876 334444 78888888 88886
Q ss_pred CCCCceEeCccccCCCCCCCCccccCCccccccccccc--ccccccCcccccccccccCcccceEe
Q 002115 847 GVQSVKRVGNEFLGVESDTDGSSVIAFPKLKQLRFDEM--DVLEEWDFGTAINGEIMIMPRLSSLS 910 (965)
Q Consensus 847 ~~~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~--~~L~~~~~~~~~~~~~~~~~~L~~L~ 910 (965)
+ .++.++...+. ++++|+.|.+.+. ..+....|. .+++|+.|+
T Consensus 283 ~--~l~~I~~~aF~-----------~c~~L~~l~l~~n~i~~I~~~aF~--------~~~~L~~ly 327 (329)
T 3sb4_A 283 A--SVTAIEFGAFM-----------GCDNLRYVLATGDKITTLGDELFG--------NGVPSKLIY 327 (329)
T ss_dssp T--TCCEECTTTTT-----------TCTTEEEEEECSSCCCEECTTTTC--------TTCCCCEEE
T ss_pred c--cceEEchhhhh-----------CCccCCEEEeCCCccCccchhhhc--------CCcchhhhc
Confidence 6 46666554332 5778888887543 233333343 467777765
No 152
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.79 E-value=5.7e-08 Score=105.46 Aligned_cols=187 Identities=12% Similarity=0.033 Sum_probs=116.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccccccc-c-cceEEEEcCCCCCHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRN-F-EKRIWVCVSEPFDEFRIARA 255 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F-~~~~wv~vs~~~~~~~~~~~ 255 (965)
.+++|++..++.+..++... ....+.|+|++|+||||+|+.+++. +... + ...+.+..+....... .+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~-~~~ 95 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGINV-IRE 95 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHHT-THH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchHH-HHH
Confidence 46899999999999988643 2334899999999999999999876 2111 1 1233444432111111 111
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchH-HHhh-cCCc
Q 002115 256 IIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEI-VARC-MRST 333 (965)
Q Consensus 256 i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~-~~~~ 333 (965)
.+..+.... ....+++.++|+||++......++.+...+.....++++|+||.... +... ....
T Consensus 96 ~~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 96 KVKEFARTK--------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp HHHHHHHSC--------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred HHHHHHhhC--------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC
Confidence 111100000 01126788999999987655566777777766666788888886542 1111 1123
Q ss_pred ceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhh
Q 002115 334 NVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLL 391 (965)
Q Consensus 334 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l 391 (965)
..+.+.+++.++..+++...+...... .. .+....|++.++|.|..+..+...+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~-~~---~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGLE-LT---EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCE-EC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCCC-CC---HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 478999999999999998876433221 11 2346778899999998765544433
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.79 E-value=6e-09 Score=101.22 Aligned_cols=80 Identities=20% Similarity=0.357 Sum_probs=60.8
Q ss_pred CccceEEcCcccccccccchhhH-HhhhhccCCCcEEEeCCccCccccchh-hhccCCCcEEeccCcccccccCcc-ccC
Q 002115 591 TCLRALTLGVHSLRLCENCIKEV-RTNIENLLHLKYLNLAHQREIEKLPET-LCELYNLEHLDISYCRNLRELPQG-IGK 667 (965)
Q Consensus 591 ~~Lr~L~L~~n~l~~~~~~i~~l-p~~i~~L~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~LdL~~~~~l~~lP~~-i~~ 667 (965)
+.|++|+|++|.+ ..+ |..++++++|++|+|++|. +..+|.. +.++++|++|+|++|. +..+|.. +..
T Consensus 33 ~~L~~L~Ls~N~l-------~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~ 103 (174)
T 2r9u_A 33 TDKQRLWLNNNQI-------TKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDN 103 (174)
T ss_dssp TTCSEEECCSSCC-------CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCcEEEeCCCCc-------cccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCc-cceeCHHHhcc
Confidence 6788888885554 333 5567788888888888887 7777764 5788888888888887 6777765 777
Q ss_pred CCCccEeecCCC
Q 002115 668 LRKLMYLENDGT 679 (965)
Q Consensus 668 L~~L~~L~l~~~ 679 (965)
+++|++|++++|
T Consensus 104 l~~L~~L~L~~N 115 (174)
T 2r9u_A 104 LKSLTHIYLYNN 115 (174)
T ss_dssp CTTCSEEECCSS
T ss_pred ccCCCEEEeCCC
Confidence 888888888887
No 154
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.76 E-value=1.2e-07 Score=100.09 Aligned_cols=171 Identities=11% Similarity=-0.030 Sum_probs=107.1
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccc------cccceEEEEcCCCCCHHHH
Q 002115 179 EIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKR------NFEKRIWVCVSEPFDEFRI 252 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------~F~~~~wv~vs~~~~~~~~ 252 (965)
.+.||++|+++|...|...-. ......+.|+|++|.|||++|+.|++...... .| ..++|+...-.+...+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHH
Confidence 378999999999988865422 23566889999999999999999998732111 12 3567777777888999
Q ss_pred HHHHHHHhcCCCCCC-CCHHHHHHHHHHH--hCCceEEEEEeCCCcchhhchHhHHhhhcC-CCCCc--EEEEeecch--
Q 002115 253 ARAIIESLTGSASNF-GEFQSLMQHIQEC--VEGKKFLLVLDDLWNEVYYKWEPFYKCLKN-GLHES--KILITTRKE-- 324 (965)
Q Consensus 253 ~~~i~~~l~~~~~~~-~~~~~l~~~l~~~--l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs--~ilvTtR~~-- 324 (965)
+..|.+++.+..... ...+.+...+... -.++++++|||++..-. .-+.+...+.. ....+ .||.++...
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 999999997653222 2233344433332 24678999999997642 22333333321 01122 233334321
Q ss_pred ---HHH----hhcCCcceEeCCCCChHHHHHHHHHHhc
Q 002115 325 ---IVA----RCMRSTNVIYVNVLSEIECWSVFEQLAF 355 (965)
Q Consensus 325 ---~v~----~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 355 (965)
.+. ..++ ...+.+.+++.++-.+++.+++-
T Consensus 176 ~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 121 1121 25789999999999999988763
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.76 E-value=8.5e-09 Score=100.17 Aligned_cols=102 Identities=24% Similarity=0.319 Sum_probs=85.0
Q ss_pred ceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCcccc-chhhhccCCCcEEeccCcccccccCcc-ccCCCCc
Q 002115 594 RALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKL-PETLCELYNLEHLDISYCRNLRELPQG-IGKLRKL 671 (965)
Q Consensus 594 r~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~LdL~~~~~l~~lP~~-i~~L~~L 671 (965)
+.++++ ++.+..+|..+. .+|++|+|++|. +..+ |..|.++++|++|+|++|. +..+|.. +..+++|
T Consensus 15 ~~l~~~-------~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 15 TLVNCQ-------NIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQL 83 (174)
T ss_dssp SEEECC-------SSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred cEEEeC-------CCCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchh
Confidence 678888 455567777664 899999999999 6666 6689999999999999998 8888876 5899999
Q ss_pred cEeecCCCccccccccc-CCCcccccccCceEecCcc
Q 002115 672 MYLENDGTYSLRYLPVG-IGELIRLRIVKEFVVGGGY 707 (965)
Q Consensus 672 ~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~ 707 (965)
++|++++| .+..+|.. +..+++|+.|++..|....
T Consensus 84 ~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 84 TQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred hEEECCCC-ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99999999 55667765 8999999999998776543
No 156
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.76 E-value=1.8e-08 Score=98.38 Aligned_cols=124 Identities=23% Similarity=0.331 Sum_probs=93.3
Q ss_pred eEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHH-hhhhccCCCcEEEeCCccCccccch-hhhcc
Q 002115 567 RSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVR-TNIENLLHLKYLNLAHQREIEKLPE-TLCEL 644 (965)
Q Consensus 567 r~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp-~~i~~L~~Lr~L~L~~~~~i~~lp~-~i~~L 644 (965)
+.+.+.++.. .. +|. .-.+.|+.|++++|.+ ..+| ..++.+++|++|++++|. +..+|. .+.++
T Consensus 10 ~~l~~~~~~l---~~-~p~--~~~~~l~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 75 (177)
T 2o6r_A 10 TEIRCNSKGL---TS-VPT--GIPSSATRLELESNKL-------QSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKL 75 (177)
T ss_dssp TEEECCSSCC---SS-CCT--TCCTTCSEEECCSSCC-------CCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTC
T ss_pred CEEEecCCCC---cc-CCC--CCCCCCcEEEeCCCcc-------cEeCHHHhcCcccccEEECCCCc-ceEeChhHccCC
Confidence 4566665542 22 332 2346899999996554 4444 346889999999999999 777775 46899
Q ss_pred CCCcEEeccCcccccccCcc-ccCCCCccEeecCCCccccccccc-CCCcccccccCceEecCc
Q 002115 645 YNLEHLDISYCRNLRELPQG-IGKLRKLMYLENDGTYSLRYLPVG-IGELIRLRIVKEFVVGGG 706 (965)
Q Consensus 645 ~~L~~LdL~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~ 706 (965)
++|++|++++|. +..+|.. +..+++|++|++++| .+..+|.. +..+++|+.|++..+...
T Consensus 76 ~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 76 TKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEEECCCCC-ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 999999999998 7777665 688999999999999 45566665 577899999988776554
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.75 E-value=9.4e-09 Score=99.49 Aligned_cols=80 Identities=21% Similarity=0.336 Sum_probs=43.2
Q ss_pred CccceEEcCcccccccccchhhH-HhhhhccCCCcEEEeCCccCccccchh-hhccCCCcEEeccCcccccccCcc-ccC
Q 002115 591 TCLRALTLGVHSLRLCENCIKEV-RTNIENLLHLKYLNLAHQREIEKLPET-LCELYNLEHLDISYCRNLRELPQG-IGK 667 (965)
Q Consensus 591 ~~Lr~L~L~~n~l~~~~~~i~~l-p~~i~~L~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~LdL~~~~~l~~lP~~-i~~ 667 (965)
+.|++|+|++|.+ ..+ |..+..+.+|++|+|++|. +..+|.. +.++++|++|+|++|. +..+|.. +..
T Consensus 30 ~~l~~L~L~~N~i-------~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~ 100 (170)
T 3g39_A 30 TTTQVLYLYDNQI-------TKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDN 100 (170)
T ss_dssp TTCSEEECCSSCC-------CCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCcEEEcCCCcC-------CccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcC
Confidence 4556666663333 222 3445556666666666665 4455442 4556666666666655 4444443 555
Q ss_pred CCCccEeecCCC
Q 002115 668 LRKLMYLENDGT 679 (965)
Q Consensus 668 L~~L~~L~l~~~ 679 (965)
+++|++|++++|
T Consensus 101 l~~L~~L~L~~N 112 (170)
T 3g39_A 101 LKSLTHIWLLNN 112 (170)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEEeCCC
Confidence 566666666555
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.74 E-value=2.7e-07 Score=102.32 Aligned_cols=140 Identities=11% Similarity=0.194 Sum_probs=83.9
Q ss_pred CCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCC----CCCCC--CCCCCCcceeeecCCCCceEeCccccCCC
Q 002115 789 PNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNC----EHLPP--LGKLPSIEVLEIYGVQSVKRVGNEFLGVE 862 (965)
Q Consensus 789 ~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~----~~lp~--l~~L~~L~~L~L~~~~~l~~~~~~~~~~~ 862 (965)
.+|+.+.|.+ .... ++...|..|++|+.+.+.++... ..++. |.++++|+.+.|.+ +++.++...+.
T Consensus 248 ~~L~~i~lp~-~i~~--I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~-- 320 (401)
T 4fdw_A 248 SGITTVKLPN-GVTN--IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLG-- 320 (401)
T ss_dssp CCCSEEEEET-TCCE--ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT--
T ss_pred CCccEEEeCC-CccE--EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhc--
Confidence 3566666632 2223 33356667778888887776443 12333 77888888888863 36666654432
Q ss_pred CCCCCccccCCcccccccccccccccccCcccccccccccCcccceEeeccCccCcCCCcCCCCC-CCCCeEeEcCCcch
Q 002115 863 SDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPDRLLQK-TTLQALTIGECPIL 941 (965)
Q Consensus 863 ~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~l~~l-~~L~~L~l~~c~~l 941 (965)
++++|+.+.|.+. ++.+. ...|..+ +|+.|.+.+|......+..+..+ .+++.|++-.+.
T Consensus 321 ---------~c~~L~~l~lp~~--l~~I~-----~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~-- 381 (401)
T 4fdw_A 321 ---------GNRKVTQLTIPAN--VTQIN-----FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES-- 381 (401)
T ss_dssp ---------TCCSCCEEEECTT--CCEEC-----TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG--
T ss_pred ---------CCCCccEEEECcc--ccEEc-----HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH--
Confidence 5678888877442 33322 2345577 99999999986433333456666 478899987753
Q ss_pred HHhhccCCCCCCccc
Q 002115 942 EERCRKETGEDWPKI 956 (965)
Q Consensus 942 ~~~~~~~~~~~~~~i 956 (965)
.+.+... ..|...
T Consensus 382 ~~~y~~a--~~W~~f 394 (401)
T 4fdw_A 382 VEKYKNA--NGWRDF 394 (401)
T ss_dssp HHHHHHS--TTGGGG
T ss_pred HHHhhhc--cchhhh
Confidence 3444332 347554
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.66 E-value=4.6e-07 Score=100.26 Aligned_cols=195 Identities=15% Similarity=0.193 Sum_probs=115.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.+++|++..++.+..++.... ....+.|+|.+|+||||+|+.+.+...-...+. ...+..-.....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHh
Confidence 459999999999999986432 234788999999999999999987522111110 00000000011111
Q ss_pred HHh-------cCC-CCCCCCHHHHHHHHHHH-hCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchH-H-
Q 002115 258 ESL-------TGS-ASNFGEFQSLMQHIQEC-VEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEI-V- 326 (965)
Q Consensus 258 ~~l-------~~~-~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v- 326 (965)
... ... .....+...+...+... ..+++.+||+||+...+...++.+...+.....+..+|++|.... +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 000 000 01112233333222211 135678999999976555566777777766556677777776432 1
Q ss_pred HhhcCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHH
Q 002115 327 ARCMRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIA 388 (965)
Q Consensus 327 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 388 (965)
.........+++.+++.++..+++...+-..+.... .+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~----~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHCCCCHHHHHHHH
Confidence 111223468999999999999999876532211111 2346779999999998876654
No 160
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.65 E-value=4.1e-08 Score=94.98 Aligned_cols=103 Identities=24% Similarity=0.294 Sum_probs=81.7
Q ss_pred cceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCcccc-chhhhccCCCcEEeccCcccccccCcc-ccCCCC
Q 002115 593 LRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKL-PETLCELYNLEHLDISYCRNLRELPQG-IGKLRK 670 (965)
Q Consensus 593 Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~LdL~~~~~l~~lP~~-i~~L~~ 670 (965)
.+.|+++ ++.+..+|..+. .+|++|+|++|. +..+ |..|.++++|++|+|++|. +..+|.. +..+++
T Consensus 11 ~~~l~~s-------~n~l~~ip~~~~--~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 11 GTTVDCS-------GKSLASVPTGIP--TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQ 79 (170)
T ss_dssp TTEEECT-------TSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCEEEeC-------CCCcCccCccCC--CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCC
Confidence 4678888 444566776653 789999999999 6666 6678999999999999998 7777766 578999
Q ss_pred ccEeecCCCcccccccc-cCCCcccccccCceEecCcc
Q 002115 671 LMYLENDGTYSLRYLPV-GIGELIRLRIVKEFVVGGGY 707 (965)
Q Consensus 671 L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~ 707 (965)
|++|++++| .+..+|. .+..+++|+.|++..|....
T Consensus 80 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 80 LTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 999999998 4556665 48889999999988876543
No 161
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.60 E-value=5.1e-07 Score=97.47 Aligned_cols=182 Identities=10% Similarity=0.013 Sum_probs=113.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccc-cceEEEEcCCCCCHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNF-EKRIWVCVSEPFDEFRIARAI 256 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i 256 (965)
.+++|++..++.+.+++... ....+.++|++|+||||+|+.+++... ...+ ...+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-------
Confidence 46899999999998887542 223389999999999999999987521 1111 12334444432111
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHH--h-CCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchH-HH-hhcC
Q 002115 257 IESLTGSASNFGEFQSLMQHIQEC--V-EGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEI-VA-RCMR 331 (965)
Q Consensus 257 ~~~l~~~~~~~~~~~~l~~~l~~~--l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~-~~~~ 331 (965)
............. + .+++-++|+|++..-.....+.+...+.....+.++|+||.... +. ....
T Consensus 83 -----------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 83 -----------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp -----------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred -----------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 1111111111111 1 25688999999976544455667666665556778888876543 11 1112
Q ss_pred CcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHH
Q 002115 332 STNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIA 388 (965)
Q Consensus 332 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 388 (965)
....+.+.+++.++..+++...+...+..-. .+....+++.++|.+..+....
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCCBC----HHHHHHHHHTTTTCHHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 3458999999999999999887643322111 2346778899999997655443
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.50 E-value=3.7e-07 Score=101.28 Aligned_cols=239 Identities=12% Similarity=0.117 Sum_probs=143.5
Q ss_pred cCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHh-hhhccCCCcEEEeCCccCccccc-hh
Q 002115 563 VKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRT-NIENLLHLKYLNLAHQREIEKLP-ET 640 (965)
Q Consensus 563 ~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~-~i~~L~~Lr~L~L~~~~~i~~lp-~~ 640 (965)
+..+.++.+-+. +..+-...|.++ +|+.+.|..+ +..++. .|.+ .+|+.+.+.. . ++.++ ..
T Consensus 112 ~~~l~~i~ip~~----i~~I~~~aF~~~-~L~~i~l~~~--------i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~a 175 (401)
T 4fdw_A 112 LKGYNEIILPNS----VKSIPKDAFRNS-QIAKVVLNEG--------LKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDI 175 (401)
T ss_dssp CSSCSEEECCTT----CCEECTTTTTTC-CCSEEECCTT--------CCEECTTTTTT-CCCCEEECCT-T-CCEECSST
T ss_pred cCCccEEEECCc----cCEehHhhcccC-CccEEEeCCC--------ccEECHHhcCC-CCceEEEeCC-C-ccEehHHH
Confidence 345555554432 333344556664 6788887632 334433 3444 4688888876 3 55555 36
Q ss_pred hhccCCCcEEeccCcccccccCccccCCCCccEeecCCCccccccc-ccCCCcccccccCceEecCccCCCCCccccccC
Q 002115 641 LCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLP-VGIGELIRLRIVKEFVVGGGYDRACSLGSLKKL 719 (965)
Q Consensus 641 i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 719 (965)
|.++.+|+.+++.+|. +..+|.......+|+.+.+..+ +..++ ..|.++++|+.+.+..+ ........+.. .+
T Consensus 176 F~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~- 249 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SG- 249 (401)
T ss_dssp TTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CC-
T ss_pred hhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CC-
Confidence 7788888888888776 7777776555678888887654 33444 34667777777765431 11111222333 22
Q ss_pred CcCCcceeec-cCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCCCceEEEee
Q 002115 720 NLLRYCRIHG-LGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPNLKELRIYQ 798 (965)
Q Consensus 720 ~~L~~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 798 (965)
|+.+.+.. +..++. ..+..+++|+.+.+..+.+...... .--...+..|++|+.+.|.+
T Consensus 250 --L~~i~lp~~i~~I~~------~aF~~c~~L~~l~l~~~~~~~~~~~------------~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 250 --ITTVKLPNGVTNIAS------RAFYYCPELAEVTTYGSTFNDDPEA------------MIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp --CSEEEEETTCCEECT------TTTTTCTTCCEEEEESSCCCCCTTC------------EECTTTTTTCTTCCEECCCT
T ss_pred --ccEEEeCCCccEECh------hHhhCCCCCCEEEeCCccccCCccc------------EECHHHhhCCccCCeEEeCC
Confidence 33333321 112221 4678889999999988744311000 01123567889999999984
Q ss_pred ecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC--CCCCCCcceeeecCCC
Q 002115 799 YRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP--LGKLPSIEVLEIYGVQ 849 (965)
Q Consensus 799 ~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~--l~~L~~L~~L~L~~~~ 849 (965)
+ ... ++...|..|++|+.|.|..+ ...++. |.++ +|+.|.+.++.
T Consensus 310 ~-i~~--I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 310 S-IRI--LGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp T-CCE--ECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred c-eEE--EhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 3 444 45477889999999999766 333433 8888 99999998864
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.48 E-value=1e-06 Score=98.15 Aligned_cols=310 Identities=13% Similarity=0.086 Sum_probs=161.0
Q ss_pred chhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHH-hhhhccCCCcEEEeCCccC
Q 002115 555 VSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVR-TNIENLLHLKYLNLAHQRE 633 (965)
Q Consensus 555 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp-~~i~~L~~Lr~L~L~~~~~ 633 (965)
+...+|.+|.+|+++.+... +..+-..+|.++.+|+.++|..+ +..++ ..+.++..|+.+.+..+
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~----i~~I~~~aF~~c~~L~~i~lp~~--------l~~I~~~aF~~c~~L~~i~~p~~-- 127 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST----VREIGEFAFENCSKLEIINIPDS--------VKMIGRCTFSGCYALKSILLPLM-- 127 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT----CCEECTTTTTTCTTCCEECCCTT--------CCEECTTTTTTCTTCCCCCCCTT--
T ss_pred hHHHHhhCCCCceEEEeCCC----ccCcchhHhhCCCCCcEEEeCCC--------ceEccchhhcccccchhhcccCc--
Confidence 45566768899999888532 34444567889999999999632 23333 34667777777766554
Q ss_pred ccccc-hhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCCcccccccc-cCCCcccccccCceEecCccCCCC
Q 002115 634 IEKLP-ETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGTYSLRYLPV-GIGELIRLRIVKEFVVGGGYDRAC 711 (965)
Q Consensus 634 i~~lp-~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~ 711 (965)
+..++ ..|.++..++.........+ -...+..+++|+.+.+..+ ...++. .+.++.+|+.+.+..+ .......
T Consensus 128 l~~i~~~aF~~~~~~~~~~~~~~~~i--~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~ 202 (394)
T 4fs7_A 128 LKSIGVEAFKGCDFKEITIPEGVTVI--GDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDY 202 (394)
T ss_dssp CCEECTTTTTTCCCSEEECCTTCCEE--CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTT
T ss_pred eeeecceeeecccccccccCcccccc--chhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCch
Confidence 33333 24555544444433332211 1234666777777777654 123332 3566667766655321 1111123
Q ss_pred CccccccCCcCCccee-eccCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCChhhhHHhhhcCCCCCC
Q 002115 712 SLGSLKKLNLLRYCRI-HGLGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNEEDEDERLLEALGPPPN 790 (965)
Q Consensus 712 ~~~~l~~L~~L~~l~~-~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 790 (965)
.+..+..|+.+..... ...+ .......+|+.+.+..+ ++.. -...+..+.+
T Consensus 203 ~F~~~~~L~~i~~~~~~~~i~----------~~~~~~~~l~~i~ip~~-~~~i-----------------~~~~f~~~~~ 254 (394)
T 4fs7_A 203 CFAECILLENMEFPNSLYYLG----------DFALSKTGVKNIIIPDS-FTEL-----------------GKSVFYGCTD 254 (394)
T ss_dssp TTTTCTTCCBCCCCTTCCEEC----------TTTTTTCCCCEEEECTT-CCEE-----------------CSSTTTTCSS
T ss_pred hhccccccceeecCCCceEee----------hhhcccCCCceEEECCC-ceec-----------------cccccccccc
Confidence 3444444443331110 0000 11223356776666432 0000 0123445667
Q ss_pred CceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCCCCCCCCcceeeecCCCCceEeCccccCCCCCCCCccc
Q 002115 791 LKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPPLGKLPSIEVLEIYGVQSVKRVGNEFLGVESDTDGSSV 870 (965)
Q Consensus 791 L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~l~~L~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 870 (965)
|+.+.+..+... ++...|..+..|+.+.+....... ..+..+.+|+.+.+.+ +++.++...+.
T Consensus 255 l~~~~~~~~~~~---i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~--~i~~I~~~aF~---------- 317 (394)
T 4fs7_A 255 LESISIQNNKLR---IGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLD--SVKFIGEEAFE---------- 317 (394)
T ss_dssp CCEEEECCTTCE---ECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECT--TCCEECTTTTT----------
T ss_pred ceeEEcCCCcce---eeccccccccccceeccCceeecc--cccccccccccccccc--ccceechhhhc----------
Confidence 777777654332 222455667777777665542111 1266677777777743 35555543321
Q ss_pred cCCcccccccccccccccccCcccccccccccCcccceEeeccCccCcCCC-cCCCCCCCCCeEeEcCC
Q 002115 871 IAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALP-DRLLQKTTLQALTIGEC 938 (965)
Q Consensus 871 ~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~c 938 (965)
.+.+|+.+.|.+ +++.+. ...|..+++|+.+.|..+ ++.++ ..+.++++|+++++..+
T Consensus 318 -~c~~L~~i~lp~--~v~~I~-----~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 318 -SCTSLVSIDLPY--LVEEIG-----KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp -TCTTCCEECCCT--TCCEEC-----TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred -CCCCCCEEEeCC--cccEEh-----HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 456677766532 122221 134456777777777654 44443 35667777887777543
No 164
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.45 E-value=8.6e-07 Score=87.64 Aligned_cols=151 Identities=17% Similarity=0.189 Sum_probs=82.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccc---cc--cccceEEEEcCCCCCHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGV---KR--NFEKRIWVCVSEPFDEFRI 252 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~--~F~~~~wv~vs~~~~~~~~ 252 (965)
..++||+++++++.+++... ..+.+.|+|.+|+|||++|+.+++...- .. .....+++.++. +
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 89 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 89 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H
Confidence 46899999999999998642 3446789999999999999999876211 00 112233443311 1
Q ss_pred HHHHHHHhcCCCCCCCCHHH-HHHHHHHHh-CCceEEEEEeCCCcch--------hhchHhHHhhhcCCCCCcEEEEeec
Q 002115 253 ARAIIESLTGSASNFGEFQS-LMQHIQECV-EGKKFLLVLDDLWNEV--------YYKWEPFYKCLKNGLHESKILITTR 322 (965)
Q Consensus 253 ~~~i~~~l~~~~~~~~~~~~-l~~~l~~~l-~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvTtR 322 (965)
. .... ....... +...+.... .+++.+||+||+.... ......+...+.. .+..+|.||.
T Consensus 90 ~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~ 159 (195)
T 1jbk_A 90 V-------AGAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATT 159 (195)
T ss_dssp H-------TTTC-SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEEC
T ss_pred h-------ccCC-ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCC
Confidence 0 0000 0001111 111111111 3668899999996532 1112233333322 2345777776
Q ss_pred chHHHh-------hcCCcceEeCCCCChHHHHHHH
Q 002115 323 KEIVAR-------CMRSTNVIYVNVLSEIECWSVF 350 (965)
Q Consensus 323 ~~~v~~-------~~~~~~~~~l~~L~~~~~~~lf 350 (965)
...... .......+.+.+++.++..+++
T Consensus 160 ~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 554321 1122336888888888876543
No 165
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.44 E-value=4.7e-08 Score=107.37 Aligned_cols=160 Identities=18% Similarity=0.139 Sum_probs=86.9
Q ss_pred eEEEEEEEeCCCccchhhHhhh-----cCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHh
Q 002115 541 KVLHLMLNLDGRHLVSISIWDH-----VKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRT 615 (965)
Q Consensus 541 ~~r~L~l~~~~~~~~~~~~~~~-----~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~ 615 (965)
.++.+.+..+.+.......+.. .++|+.|.+.++.... .........+++|+.|+|++|.++ ......+..
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~--~~~~~l~~~L~~L~~L~Ls~n~l~--~~~~~~L~~ 148 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP--AGLRTLLPVFLRARKLGLQLNSLG--PEACKDLRD 148 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH--HHHHHTHHHHHTEEEEECCSSCCC--HHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH--HHHHHHHHHHHhccHhhcCCCCCC--HHHHHHHHH
Confidence 4556666666654322222212 2567777777765311 112222334556777777766654 333333444
Q ss_pred hhh-ccCCCcEEEeCCccCccc-----cchhhhccCCCcEEeccCcccccc-----cCccccCCCCccEeecCCCcccc-
Q 002115 616 NIE-NLLHLKYLNLAHQREIEK-----LPETLCELYNLEHLDISYCRNLRE-----LPQGIGKLRKLMYLENDGTYSLR- 683 (965)
Q Consensus 616 ~i~-~L~~Lr~L~L~~~~~i~~-----lp~~i~~L~~L~~LdL~~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~~~- 683 (965)
.+. ...+|++|+|++|. ++. ++..+..+++|++|+|++|. +.. ++..+...++|++|++++|....
T Consensus 149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 332 35667777777776 433 44555667777777777776 432 34455666677777777774321
Q ss_pred ---cccccCCCcccccccCceEecCc
Q 002115 684 ---YLPVGIGELIRLRIVKEFVVGGG 706 (965)
Q Consensus 684 ---~~p~~i~~l~~L~~L~l~~~~~~ 706 (965)
.++..+...++|++|++..|.+.
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 22233344556666666555443
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.41 E-value=4.6e-06 Score=92.78 Aligned_cols=316 Identities=12% Similarity=0.087 Sum_probs=191.3
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHH-hhhh
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVR-TNIE 618 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp-~~i~ 618 (965)
.++..+.+. +++..+....|.+|.+|+++.+.++ +..+-...|.++..|+.+.+..+ +..+. ..+.
T Consensus 71 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~----l~~I~~~aF~~c~~L~~i~~p~~--------l~~i~~~aF~ 137 (394)
T 4fs7_A 71 RKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS----VKMIGRCTFSGCYALKSILLPLM--------LKSIGVEAFK 137 (394)
T ss_dssp TTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT----CCEECTTTTTTCTTCCCCCCCTT--------CCEECTTTTT
T ss_pred CCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC----ceEccchhhcccccchhhcccCc--------eeeecceeee
Confidence 467777774 3455577778889999999988543 33334556889999998887632 12222 3344
Q ss_pred ccCCCcEEEeCCccCccccc-hhhhccCCCcEEeccCcccccccCc-cccCCCCccEeecCCCccccccc-ccCCCcccc
Q 002115 619 NLLHLKYLNLAHQREIEKLP-ETLCELYNLEHLDISYCRNLRELPQ-GIGKLRKLMYLENDGTYSLRYLP-VGIGELIRL 695 (965)
Q Consensus 619 ~L~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~LdL~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L 695 (965)
+...+....... +..++ ..|.++.+|+.+.+.++ +..++. .+..+.+|+.+.+..+ +..++ ..+.++..|
T Consensus 138 ~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 138 GCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILL 210 (394)
T ss_dssp TCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTC
T ss_pred cccccccccCcc---ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhcccccc
Confidence 454444333332 22333 46889999999999864 344554 4678899999998765 23333 346777788
Q ss_pred cccCceEecCccCCCCCccccccCCcCCcceeec-cCCCCCHhHHHHhhccCCCCCCceEEEeeccCCCCcccccCCCCC
Q 002115 696 RIVKEFVVGGGYDRACSLGSLKKLNLLRYCRIHG-LGDVSDAGEARRAELEKKKNLSNLELHFDHLRDGDEEQAGRRDNE 774 (965)
Q Consensus 696 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 774 (965)
+.+.+....... +........|+. +.+.. ...+.. ..+..+..|+.+.+..+...
T Consensus 211 ~~i~~~~~~~~i--~~~~~~~~~l~~---i~ip~~~~~i~~------~~f~~~~~l~~~~~~~~~~~------------- 266 (394)
T 4fs7_A 211 ENMEFPNSLYYL--GDFALSKTGVKN---IIIPDSFTELGK------SVFYGCTDLESISIQNNKLR------------- 266 (394)
T ss_dssp CBCCCCTTCCEE--CTTTTTTCCCCE---EEECTTCCEECS------STTTTCSSCCEEEECCTTCE-------------
T ss_pred ceeecCCCceEe--ehhhcccCCCce---EEECCCceeccc------ccccccccceeEEcCCCcce-------------
Confidence 777653322111 111111222222 22211 011111 34567788888888654210
Q ss_pred hhhhHHhhhcCCCCCCCceEEEeeecCCCCCCChhhHhhccCCcEEEEecCCCCCCCCC--CCCCCCcceeeecCCCCce
Q 002115 775 EDEDERLLEALGPPPNLKELRIYQYRGRRNVVPKIWITSLTNLRVLSLFECRNCEHLPP--LGKLPSIEVLEIYGVQSVK 852 (965)
Q Consensus 775 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~lp~--l~~L~~L~~L~L~~~~~l~ 852 (965)
-....+..++.++.+.+.... .+...+..+.+|+.+.+..+ ...++. +.++.+|+.+.|.+ +++
T Consensus 267 -----i~~~~F~~~~~l~~~~~~~~~-----i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~ 332 (394)
T 4fs7_A 267 -----IGGSLFYNCSGLKKVIYGSVI-----VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVE 332 (394)
T ss_dssp -----ECSCTTTTCTTCCEEEECSSE-----ECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCC
T ss_pred -----eeccccccccccceeccCcee-----eccccccccccccccccccc--cceechhhhcCCCCCCEEEeCC--ccc
Confidence 011245567788887776543 23255678999999999765 333433 88999999999953 366
Q ss_pred EeCccccCCCCCCCCccccCCcccccccccccccccccCcccccccccccCcccceEeeccCccCcCCCcCCCCCCCCCe
Q 002115 853 RVGNEFLGVESDTDGSSVIAFPKLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLKALPDRLLQKTTLQA 932 (965)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~lp~~l~~l~~L~~ 932 (965)
.++...+. ++.+|+.+.|... ++.+. ...|..+++|+.++|..+ ++.+...+.++++|+.
T Consensus 333 ~I~~~aF~-----------~c~~L~~i~lp~~--l~~I~-----~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 333 EIGKRSFR-----------GCTSLSNINFPLS--LRKIG-----ANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKW 392 (394)
T ss_dssp EECTTTTT-----------TCTTCCEECCCTT--CCEEC-----TTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEE
T ss_pred EEhHHhcc-----------CCCCCCEEEECcc--ccEeh-----HHHhhCCCCCCEEEECCC--CEEhhheecCCCCCcE
Confidence 67654432 5778888877432 33321 235668899999999765 3445556777888776
Q ss_pred E
Q 002115 933 L 933 (965)
Q Consensus 933 L 933 (965)
+
T Consensus 393 I 393 (394)
T 4fs7_A 393 I 393 (394)
T ss_dssp E
T ss_pred E
Confidence 5
No 167
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.40 E-value=3e-07 Score=100.63 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=59.1
Q ss_pred chHHhhcCCccceEEcCc-ccccccccchhhHH-hhhhccCCCcEEEeCCccCccccc-hhhhccCCCcEEeccCccccc
Q 002115 583 LPQLFDKLTCLRALTLGV-HSLRLCENCIKEVR-TNIENLLHLKYLNLAHQREIEKLP-ETLCELYNLEHLDISYCRNLR 659 (965)
Q Consensus 583 l~~~~~~l~~Lr~L~L~~-n~l~~~~~~i~~lp-~~i~~L~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~LdL~~~~~l~ 659 (965)
+|. +..+++|+.|+|++ |.+ ..+| ..|+.|.+|++|+|++|. +..+| ..|.+|++|+.|+|++|. +.
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l-------~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~ 93 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHL-------QHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LE 93 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSC-------CEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CS
T ss_pred cCC-CCCCCCeeEEEccCCCCC-------CCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc-cc
Confidence 555 77777777888773 443 3343 457777778888887777 55444 466777778888887777 66
Q ss_pred ccCccccCCCCccEeecCCCc
Q 002115 660 ELPQGIGKLRKLMYLENDGTY 680 (965)
Q Consensus 660 ~lP~~i~~L~~L~~L~l~~~~ 680 (965)
.+|..+....+|+.|++.+|.
T Consensus 94 ~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 94 SLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCCSTTTCSCCCCEEECCSSC
T ss_pred eeCHHHcccCCceEEEeeCCC
Confidence 676655443347777777773
No 168
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.40 E-value=1e-05 Score=88.00 Aligned_cols=178 Identities=15% Similarity=0.104 Sum_probs=107.0
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHH
Q 002115 177 ESEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAI 256 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 256 (965)
-.+++|++..++.+..++..... .......|.|+|.+|+|||++|+.+.+. ....| +.+..+.....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~~------- 94 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEKS------- 94 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCSH-------
T ss_pred HHHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccch-------
Confidence 35799999999999998865311 1123456899999999999999999875 32222 23333221111
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC------------------CCcEEE
Q 002115 257 IESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL------------------HESKIL 318 (965)
Q Consensus 257 ~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~il 318 (965)
......+.. ..+..+|+||++..........+...+.... ++..+|
T Consensus 95 --------------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 95 --------------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp --------------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred --------------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 111111211 2456789999997654444455555554332 124566
Q ss_pred EeecchH-HHhh-cC-CcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHH
Q 002115 319 ITTRKEI-VARC-MR-STNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 319 vTtR~~~-v~~~-~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 387 (965)
.||.... +... .. ....+.+.+++.++...++.+.+-.... ... .+....|++.+.|.|-.+..+
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~-~~~---~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK-TCE---EKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-EEC---HHHHHHHHHTTTTCHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHHCcCHHHHHHH
Confidence 6665422 1111 11 1357999999999999999887643221 111 234677888999998555443
No 169
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.39 E-value=1.2e-06 Score=90.15 Aligned_cols=173 Identities=12% Similarity=0.075 Sum_probs=99.8
Q ss_pred Cccccc---hHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHH
Q 002115 178 SEIFGR---EEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIAR 254 (965)
Q Consensus 178 ~~~vGr---~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 254 (965)
..|+|. +..++.+..+.... ..+.+.|+|.+|+||||+|+.+++. .........|+.++...+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH-----
Confidence 356763 34555565555321 3457889999999999999999876 3333334567766442110
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhc--hHhHHhhhcCC-CCC-cEEEEeecchH-----
Q 002115 255 AIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYK--WEPFYKCLKNG-LHE-SKILITTRKEI----- 325 (965)
Q Consensus 255 ~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~ilvTtR~~~----- 325 (965)
+.+ .+ +.+ .++-+||+||++...... .+.+...+... ..+ .++|+||+...
T Consensus 95 -~~~-----------------~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -STA-----------------LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -CGG-----------------GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -HHH-----------------HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 000 00 011 346789999997643222 23343333221 112 25788776321
Q ss_pred ----HHhhcCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHH
Q 002115 326 ----VARCMRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 326 ----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 387 (965)
+...+.....+.+.+++.++..+++...+..... ... .+....|++.++|.+-.+..+
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QLP---EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CCC---HHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHccCCHHHHHHH
Confidence 1221222368999999999999999887642221 111 235667888899988666544
No 170
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=5.6e-06 Score=90.68 Aligned_cols=194 Identities=9% Similarity=0.004 Sum_probs=113.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccccccccc-ceEEEEcCCCCCHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFE-KRIWVCVSEPFDEFRIARAI 256 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 256 (965)
..++|+++.++.+..++... ....+.|+|.+|+||||+|+.+.+.......+. ..+.+..+.......+ ++.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTH
T ss_pred HHhhCCHHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHH
Confidence 46899999999999998543 222388999999999999999987621111122 2334444443333222 222
Q ss_pred HHHhcCC-CCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchH-HHhh-cCCc
Q 002115 257 IESLTGS-ASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEI-VARC-MRST 333 (965)
Q Consensus 257 ~~~l~~~-~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~-~~~~ 333 (965)
+..+... ....... .....-.+++-+|++|++..........+...+.......++|++|.... +... ....
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 2222111 0000000 00011124567999999876544455666666665555667777775432 1111 1123
Q ss_pred ceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHH
Q 002115 334 NVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 334 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 387 (965)
..+.+.+++.++....+...+...... .. ++..+.|++.++|.|-.+..+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~-i~---~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVK-CD---DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCC-CC---HHHHHHHHHHTSSCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCC-CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 478999999999999998876432211 11 235678999999998865443
No 171
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.32 E-value=6.5e-07 Score=97.93 Aligned_cols=94 Identities=17% Similarity=0.091 Sum_probs=63.1
Q ss_pred chhhHHhhhhccCCCcEEEeCC-ccCccccc-hhhhccCCCcEEeccCcccccccCc-cccCCCCccEeecCCCcccccc
Q 002115 609 CIKEVRTNIENLLHLKYLNLAH-QREIEKLP-ETLCELYNLEHLDISYCRNLRELPQ-GIGKLRKLMYLENDGTYSLRYL 685 (965)
Q Consensus 609 ~i~~lp~~i~~L~~Lr~L~L~~-~~~i~~lp-~~i~~L~~L~~LdL~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~ 685 (965)
.+..+|. +..+.+|++|+|++ |. +..+| ..|++|.+|++|+|++|. +..+|. .|.+|++|++|+|++| .+..+
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~ 95 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN-ALESL 95 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS-CCSCC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC-cccee
Confidence 4556777 77777788888875 66 66666 467778888888888777 555443 4677788888888777 44556
Q ss_pred cccCCCcccccccCceEecCc
Q 002115 686 PVGIGELIRLRIVKEFVVGGG 706 (965)
Q Consensus 686 p~~i~~l~~L~~L~l~~~~~~ 706 (965)
|..+....+|+.|++..|...
T Consensus 96 ~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 96 SWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CSTTTCSCCCCEEECCSSCCC
T ss_pred CHHHcccCCceEEEeeCCCcc
Confidence 655433333777777666554
No 172
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.26 E-value=9.7e-07 Score=95.99 Aligned_cols=64 Identities=22% Similarity=0.124 Sum_probs=32.7
Q ss_pred HHhhhhccCCCcEEEeCCccC---------ccccchhhhccCCCcEEeccCcccccccCccccCCCCccEeecCCC
Q 002115 613 VRTNIENLLHLKYLNLAHQRE---------IEKLPETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDGT 679 (965)
Q Consensus 613 lp~~i~~L~~Lr~L~L~~~~~---------i~~lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~~ 679 (965)
+..++.++++|+.|.+..... ...++..+..+++|+.|+|++|..+ .+|. + .+++|++|++..|
T Consensus 131 L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~ 203 (362)
T 2ra8_A 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISG 203 (362)
T ss_dssp HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECS
T ss_pred HHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecC
Confidence 334444555555555543210 1134455566667777777665322 3333 3 2566777766555
No 173
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=9.4e-06 Score=88.88 Aligned_cols=197 Identities=11% Similarity=0.080 Sum_probs=107.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccc---cccc-ccc-----------------
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNND---GVKR-NFE----------------- 236 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~-~F~----------------- 236 (965)
.+++|.+..++.+.+++... ..... +.|+|+.|+||||+|+.+.+.. .... .++
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~----~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQP----RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCT----TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred HHhcCCHHHHHHHHHHHhhC----CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 46899999888888877222 11233 8999999999999999887731 0000 000
Q ss_pred ---ceEEEEcCCCC-CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC
Q 002115 237 ---KRIWVCVSEPF-DEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL 312 (965)
Q Consensus 237 ---~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 312 (965)
..+.+..+... ......++++..+..... ..... .+. .+.+++-++|+|++..-+....+.+...+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 01111111100 000012223322221110 00000 000 023467799999998755555666776665545
Q ss_pred CCcEEEEeecch-HHH-hhcCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHH
Q 002115 313 HESKILITTRKE-IVA-RCMRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIA 388 (965)
Q Consensus 313 ~gs~ilvTtR~~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 388 (965)
.+..+|++|... .+. ........+++.+++.++..+.+...+...+..-.. ++....|++.++|.+-.+..+.
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHHH
Confidence 567788877653 221 112234689999999999999998876332211110 1346778899999887665444
No 174
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.22 E-value=1.3e-05 Score=84.77 Aligned_cols=185 Identities=17% Similarity=0.097 Sum_probs=100.8
Q ss_pred CCccccchHHHHHHHHHHhcCCCC-------CCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCH
Q 002115 177 ESEIFGREEEKNELVNRLLCESSK-------EQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDE 249 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 249 (965)
-.+++|.++.++.+.+.+...... +-...+.+.|+|.+|+|||+||+.+++. ....| +.+..+.-.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~-- 88 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSELV-- 88 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGGC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHHH--
Confidence 456899999999998887432000 0123456899999999999999999876 32222 233322211
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcc-----------hhhchHhHHh---hhc--CCCC
Q 002115 250 FRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNE-----------VYYKWEPFYK---CLK--NGLH 313 (965)
Q Consensus 250 ~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~---~l~--~~~~ 313 (965)
.... ......+...+......++.+|+||++..- .......+.. .+. ....
T Consensus 89 ------------~~~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 89 ------------KKFI-GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp ------------CCST-THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred ------------Hhcc-chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 0000 000111222222233456789999999542 1111122222 222 1234
Q ss_pred CcEEEEeecchHH-Hhh-c---CCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCC-ChHhHHH
Q 002115 314 ESKILITTRKEIV-ARC-M---RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKG-LPLAAKT 386 (965)
Q Consensus 314 gs~ilvTtR~~~v-~~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G-lPlai~~ 386 (965)
+..||.||..... ... . .-...+.+...+.++..++|+..+..... ..... ...+++.+.| .|-.+..
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHH
Confidence 5677778764421 111 1 11347889999999999999887643221 11112 3557777776 4434443
No 175
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.22 E-value=1.1e-06 Score=96.39 Aligned_cols=138 Identities=14% Similarity=0.092 Sum_probs=102.3
Q ss_pred ceEEEEEEEeCCCccc-hhhHhhhcCceeEEEeccccccccc-ccchHHh-hcCCccceEEcCcccccccccchhhHHhh
Q 002115 540 KKVLHLMLNLDGRHLV-SISIWDHVKRLRSLLVESYEYSWSS-EVLPQLF-DKLTCLRALTLGVHSLRLCENCIKEVRTN 616 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~-~~l~~~~-~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~ 616 (965)
..++.|.+..+.+... ...+...+++|+.|.+.++...... ..+...+ ...+.|+.|+|++|.++ ......++..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~--~~~~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT--AAGVAVLMEG 178 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCH--HHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCC--hHHHHHHHHH
Confidence 4788999988887542 2233346778999999998742110 1122223 35788999999988876 5556667888
Q ss_pred hhccCCCcEEEeCCccCccc-----cchhhhccCCCcEEeccCccccc-----ccCccccCCCCccEeecCCCcc
Q 002115 617 IENLLHLKYLNLAHQREIEK-----LPETLCELYNLEHLDISYCRNLR-----ELPQGIGKLRKLMYLENDGTYS 681 (965)
Q Consensus 617 i~~L~~Lr~L~L~~~~~i~~-----lp~~i~~L~~L~~LdL~~~~~l~-----~lP~~i~~L~~L~~L~l~~~~~ 681 (965)
+..+++|++|+|++|. ++. ++..+...++|++|+|++|. ++ .++..+...++|++|++++|..
T Consensus 179 L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 8899999999999999 653 46677888999999999998 54 3445566789999999999954
No 176
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.22 E-value=2.5e-05 Score=87.29 Aligned_cols=178 Identities=18% Similarity=0.154 Sum_probs=102.5
Q ss_pred CccccchHHH---HHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCC-CCHHHHH
Q 002115 178 SEIFGREEEK---NELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEP-FDEFRIA 253 (965)
Q Consensus 178 ~~~vGr~~~~---~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~ 253 (965)
.+++|.+..+ ..+...+... ....+.|+|.+|+||||+|+.+.+. ....| +.++.. ..... .
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~-i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKE-I 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHH-H
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHH-H
Confidence 4689998887 6677777533 3467899999999999999999986 33332 222211 12222 1
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEE-eecchH--H-Hhh
Q 002115 254 RAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILI-TTRKEI--V-ARC 329 (965)
Q Consensus 254 ~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~--v-~~~ 329 (965)
+.++.. .......+++.+|++|++..-.....+.+...+..+ ...+|. ||.+.. + ...
T Consensus 92 r~~~~~----------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 92 REAIER----------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHHH----------------HHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHH
T ss_pred HHHHHH----------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHH
Confidence 222111 011112467899999999876555556666666653 234444 444432 1 112
Q ss_pred cCCcceEeCCCCChHHHHHHHHHHhccCCCc---cchhHHHHHHHHHHHHcCCChHhHHHH
Q 002115 330 MRSTNVIYVNVLSEIECWSVFEQLAFFGRSM---EECEKLENMGRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 330 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~---~~~~~l~~~~~~i~~~c~GlPlai~~~ 387 (965)
.....++.+.+++.++...++.+.+...... ....--.+....|++.++|.+-.+..+
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 2335688899999999999998876431100 011112345667788888877655433
No 177
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.21 E-value=3.4e-05 Score=84.90 Aligned_cols=199 Identities=12% Similarity=0.061 Sum_probs=107.2
Q ss_pred CCccccchHHHHH---HHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEE----cCCCCCH
Q 002115 177 ESEIFGREEEKNE---LVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVC----VSEPFDE 249 (965)
Q Consensus 177 ~~~~vGr~~~~~~---i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~----vs~~~~~ 249 (965)
-..++|++..++. +.+.+.... ...+.+.|+|++|+|||++|+.+.+.. .... ..+.+. .+.....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l--~~~~-~~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQAL--GPDT-PFTAIAGSEIFSLEMSK 115 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHH--CSSC-CEEEEEGGGGSCSSSCH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHh--cccC-Ccccccchhhhhcccch
Confidence 3479999988766 444444321 234688999999999999999999862 2211 112222 1223344
Q ss_pred HHHHHHHHHHhcCC----------------------------CCC--CCCHHHHHHHHHHHh-----CCc----eEEEEE
Q 002115 250 FRIARAIIESLTGS----------------------------ASN--FGEFQSLMQHIQECV-----EGK----KFLLVL 290 (965)
Q Consensus 250 ~~~~~~i~~~l~~~----------------------------~~~--~~~~~~l~~~l~~~l-----~~k----r~LlVl 290 (965)
...+........+. ..+ ..-...+...+.... .++ +.+|++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 44444443331110 000 000122222222211 233 349999
Q ss_pred eCCCcchhhchHhHHhhhcCCCCCcEEEEeecc-------------hHH-HhhcCCcceEeCCCCChHHHHHHHHHHhcc
Q 002115 291 DDLWNEVYYKWEPFYKCLKNGLHESKILITTRK-------------EIV-ARCMRSTNVIYVNVLSEIECWSVFEQLAFF 356 (965)
Q Consensus 291 Ddv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-------------~~v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 356 (965)
|++..........+...+...... .++++|.. ..+ .........+.+.+++.++..+++...+-.
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHH
Confidence 999876555666666666544333 34444431 111 111122345899999999999999887643
Q ss_pred CCCccchhHHHHHHHHHHHHcC-CChHhHHHH
Q 002115 357 GRSMEECEKLENMGRQIVRKCK-GLPLAAKTI 387 (965)
Q Consensus 357 ~~~~~~~~~l~~~~~~i~~~c~-GlPlai~~~ 387 (965)
....-. .+....|++.+. |.|-.+..+
T Consensus 275 ~~~~~~----~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 275 EDVEMS----EDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp TTCCBC----HHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCCCCC----HHHHHHHHHHhcCCCHHHHHHH
Confidence 222111 234567788887 777555433
No 178
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.18 E-value=2.2e-05 Score=87.97 Aligned_cols=160 Identities=15% Similarity=0.131 Sum_probs=95.7
Q ss_pred cEEEEEEecCCChHHHHHHHHHcccccccccc--ceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFE--KRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVE 282 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 282 (965)
...+.|+|.+|+||||||+.+++. ....|. ..++++.+ .+...+...+... ... .+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CHH----HHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cHH----HHHHHhc
Confidence 557899999999999999999986 333332 23455433 3344444444322 111 2333334
Q ss_pred CceEEEEEeCCCcchh--hchHhHHhhhcC-CCCCcEEEEeecch---------HHHhhcCCcceEeCCCCChHHHHHHH
Q 002115 283 GKKFLLVLDDLWNEVY--YKWEPFYKCLKN-GLHESKILITTRKE---------IVARCMRSTNVIYVNVLSEIECWSVF 350 (965)
Q Consensus 283 ~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 350 (965)
.+.-+|++||++.... ..-+.+...+.. ...|..||+||... .+...+.....+.+.+++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3677999999965322 122334444322 13467888888752 22222333467899999999999999
Q ss_pred HHHhccCCCccchhHHHHHHHHHHHHcCCChHhHH
Q 002115 351 EQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAK 385 (965)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 385 (965)
.+.+..... ..++ ++...|++.+.|.+-.+.
T Consensus 273 ~~~~~~~~~-~i~~---e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 273 RKMLEIEHG-ELPE---EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHTC-CCCT---THHHHHHHHCCSCHHHHH
T ss_pred HHHHHHcCC-CCCH---HHHHHHHHhcCCCHHHHH
Confidence 887632111 1111 235678888888876543
No 179
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.16 E-value=3.5e-05 Score=83.19 Aligned_cols=172 Identities=13% Similarity=0.070 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccc--------------------cccceEEEEc
Q 002115 184 EEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKR--------------------NFEKRIWVCV 243 (965)
Q Consensus 184 ~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~v 243 (965)
++..+.+...+... .-...+.++|..|+||||+|+.+.+.-.-.. |+| ..++..
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 45566666666432 2345789999999999999999886511000 111 223322
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEE
Q 002115 244 SEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQEC----VEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILI 319 (965)
Q Consensus 244 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv 319 (965)
.. .......+++...+... ..+++-++|+|++...+....+.+...+.....++.+|+
T Consensus 82 ~~------------------~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp CT------------------TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred cc------------------cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 10 00111222222222111 135678999999987655566777777766656677777
Q ss_pred eecchH-H-HhhcCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHH
Q 002115 320 TTRKEI-V-ARCMRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIA 388 (965)
Q Consensus 320 TtR~~~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~ 388 (965)
+|.... + .........+++.++++++..+.+.+.. . .. .+....+++.++|.|..+..+.
T Consensus 144 ~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~--~~----~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 144 ATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---T--MS----QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---C--CC----HHHHHHHHHHTTTCHHHHHHTT
T ss_pred EeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---C--CC----HHHHHHHHHHcCCCHHHHHHHh
Confidence 776542 2 2222335689999999999999998875 1 11 1235678999999997665443
No 180
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.15 E-value=3.9e-05 Score=79.81 Aligned_cols=187 Identities=14% Similarity=0.097 Sum_probs=98.6
Q ss_pred CccccchHHHHHHHHHHh---cCCC---CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHH
Q 002115 178 SEIFGREEEKNELVNRLL---CESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFR 251 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 251 (965)
.+++|.+..++.+.+++. .... -+....+.+.|+|.+|+|||++|+.+++. .... .+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhh--
Confidence 468999988777766542 2110 01123456889999999999999999976 3222 234444332110
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcc------------hhhc---hHhHHhhhcC--CCCC
Q 002115 252 IARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNE------------VYYK---WEPFYKCLKN--GLHE 314 (965)
Q Consensus 252 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~------------~~~~---~~~l~~~l~~--~~~g 314 (965)
........+...+.......+.+|++|++..- .... ...+...+.. ...+
T Consensus 79 -------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 79 -------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp -------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred -------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 00001112222233333356789999999653 1111 1223333332 1234
Q ss_pred cEEEEeecchH-HHhhc-C---CcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChH-hHHHH
Q 002115 315 SKILITTRKEI-VARCM-R---STNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPL-AAKTI 387 (965)
Q Consensus 315 s~ilvTtR~~~-v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPl-ai~~~ 387 (965)
..||.||.... +.... . -...+.+...+.++..+++...+..... .... ......+++.+.|.+- .+..+
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~--~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSS--TFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTH--HHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-Ccch--hhHHHHHHHHCCCCCHHHHHHH
Confidence 56666665433 11111 1 1357789999999999999887643221 1111 1234678888888654 44433
No 181
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.12 E-value=2.9e-05 Score=83.77 Aligned_cols=178 Identities=15% Similarity=0.109 Sum_probs=104.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.+++|.+..++.+.+++... ....++.+.|.+|+|||++|+.+.+. ... ..+.++.+.. .. ...+.++
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~-----~~~~~~L~~G~~G~GKT~la~~la~~--l~~---~~~~i~~~~~-~~-~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG-----KIPHIILHSPSPGTGKTTVAKALCHD--VNA---DMMFVNGSDC-KI-DFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT-----CCCSEEEECSSTTSSHHHHHHHHHHH--TTE---EEEEEETTTC-CH-HHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCC---CEEEEccccc-CH-HHHHHHH
Confidence 56899999999999998643 23457888889999999999999876 321 2345554442 22 2222222
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcch-hhchHhHHhhhcCCCCCcEEEEeecchH-HHhh-cCCcc
Q 002115 258 ESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEV-YYKWEPFYKCLKNGLHESKILITTRKEI-VARC-MRSTN 334 (965)
Q Consensus 258 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~-~~~~~ 334 (965)
....... ...+++-+||+|++..-. ....+.+...+.....+.++|+||.... +... .....
T Consensus 94 ~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 94 TNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred HHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 2111000 012478899999998755 4455556665554445678888886543 1111 11135
Q ss_pred eEeCCCCChHHHHHHH-------HHHhccCCCccchhHHHHHHHHHHHHcCCChHhHH
Q 002115 335 VIYVNVLSEIECWSVF-------EQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAK 385 (965)
Q Consensus 335 ~~~l~~L~~~~~~~lf-------~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 385 (965)
.+.+.+++.++-.+++ ...+..... ...+ .+....|++.++|.+-.+.
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~-~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGI-AIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC-CBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC-CCCc--HHHHHHHHHhCCCCHHHHH
Confidence 7899999988843332 222211111 1111 1456778888988776443
No 182
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=2.7e-05 Score=89.49 Aligned_cols=198 Identities=14% Similarity=0.122 Sum_probs=110.9
Q ss_pred CccccchHHHHHHHHHHhcCCC-----------CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCC
Q 002115 178 SEIFGREEEKNELVNRLLCESS-----------KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEP 246 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~-----------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 246 (965)
.+++|++..++.+.+|+..... .+....+.+.|+|++|+||||+|+.+++.. . + ..+.++.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l--~--~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL--G--Y-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT--T--C-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc--C--C-CEEEEeCCCc
Confidence 4689999999999999865210 011234689999999999999999999862 1 2 2345555554
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchh---hchHhHHhhhcCCCCCcEEEEeecc
Q 002115 247 FDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVY---YKWEPFYKCLKNGLHESKILITTRK 323 (965)
Q Consensus 247 ~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~---~~~~~l~~~l~~~~~gs~ilvTtR~ 323 (965)
.... +....+........-..-...... .....+++.+||+|++..-.. ..+..+...+... +..||+++..
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~ 188 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNE 188 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESC
T ss_pred chHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 4433 222222222111000000000000 001236788999999965322 1234444444432 2345555543
Q ss_pred hH---HHhhcCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCC-ChHhHHHHHH
Q 002115 324 EI---VARCMRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKG-LPLAAKTIAS 389 (965)
Q Consensus 324 ~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G-lPlai~~~~~ 389 (965)
.. +.........+.+.+++.++..+++...+......... +....|++.++| ++-++..+..
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~----~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP----NVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT----THHHHHHHHTTTCHHHHHHHHTH
T ss_pred CCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 22222234578999999999999988776432221111 235678889999 4455555543
No 183
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.09 E-value=2.4e-05 Score=83.71 Aligned_cols=161 Identities=14% Similarity=0.084 Sum_probs=90.7
Q ss_pred ccccchHHHHHHHHHHhcCC---------CCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCH
Q 002115 179 EIFGREEEKNELVNRLLCES---------SKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDE 249 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~---------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 249 (965)
.++|.+..++.|.+++.... -........+.|+|.+|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47888888888876653210 001224457899999999999999988875221111111123333210
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcc---------hhhchHhHHhhhcCCCCCcEEEEe
Q 002115 250 FRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNE---------VYYKWEPFYKCLKNGLHESKILIT 320 (965)
Q Consensus 250 ~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvT 320 (965)
.+..... ......+...+... +.-+|++|++..- .......+...+.....+..||.|
T Consensus 109 ---------~l~~~~~-g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYI-GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSST-TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhcc-cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1111000 01111222222222 2349999999732 333445666666666666788888
Q ss_pred ecchHHHhh--cC------CcceEeCCCCChHHHHHHHHHHhc
Q 002115 321 TRKEIVARC--MR------STNVIYVNVLSEIECWSVFEQLAF 355 (965)
Q Consensus 321 tR~~~v~~~--~~------~~~~~~l~~L~~~~~~~lf~~~~~ 355 (965)
|........ .. ....+.+.+++.++..+++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 865432111 01 136888999999999999988764
No 184
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.06 E-value=2.8e-05 Score=86.46 Aligned_cols=111 Identities=13% Similarity=0.175 Sum_probs=55.9
Q ss_pred hhHhhhcC-ceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHH-hhhhccCCCcEEEeCCccCc
Q 002115 557 ISIWDHVK-RLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVR-TNIENLLHLKYLNLAHQREI 634 (965)
Q Consensus 557 ~~~~~~~~-~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp-~~i~~L~~Lr~L~L~~~~~i 634 (965)
...|.+++ .|+++.+-.. +..+-..+|.++.+|+.+.+..+. ...+..+. ..|..+..|+.+.+..+ +
T Consensus 56 ~~aF~~~~~~L~sI~iP~s----vt~Ig~~AF~~C~~L~~i~~~~n~----p~~l~~Ig~~aF~~c~~L~~i~~~~~--~ 125 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT----VTEIGSNAFYNCTSLKRVTIQDNK----PSCVKKIGRQAFMFCSELTDIPILDS--V 125 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT----CCEECTTTTTTCTTCCEEEEGGGC----CCCCCEECTTTTTTCTTCCBCGGGTT--C
T ss_pred HhhccCCCCcCEEEEECCC----eeEEhHHHhhCCccCceEeecCCC----CCeeeEechhhchhcccceeeccCCc--c
Confidence 34444553 3666666432 333344557777777777765321 11122332 23455566666555443 3
Q ss_pred cccch-hhhccCCCcEEeccCcccccccCc-cccCCCCccEeecCCC
Q 002115 635 EKLPE-TLCELYNLEHLDISYCRNLRELPQ-GIGKLRKLMYLENDGT 679 (965)
Q Consensus 635 ~~lp~-~i~~L~~L~~LdL~~~~~l~~lP~-~i~~L~~L~~L~l~~~ 679 (965)
..++. .+..+.+|+.+.+..+ +..++. .+..+.+|+.+.+..+
T Consensus 126 ~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 126 TEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp SEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred ceehhhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 44443 4566666776666543 233332 3455666666666543
No 185
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.01 E-value=6.3e-05 Score=78.70 Aligned_cols=171 Identities=18% Similarity=0.186 Sum_probs=91.3
Q ss_pred CccccchHHHHHHHHH-------HhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHH
Q 002115 178 SEIFGREEEKNELVNR-------LLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEF 250 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~-------L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (965)
..++|....+++++.. +... .......+.|+|.+|+|||++|+.+++. ....| +.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~---- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDK---- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGG----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHH----
Confidence 3578888777776663 2211 1235678999999999999999999986 22222 22222211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcc------h---hhch-HhHHhhhcC---CCCCcEE
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNE------V---YYKW-EPFYKCLKN---GLHESKI 317 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~------~---~~~~-~~l~~~l~~---~~~gs~i 317 (965)
+.+. ........+...+......+..+|++|++... . ...+ ..+...+.. ......|
T Consensus 101 ---------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 ---------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ---------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ---------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 1000 00000122223333344567899999998542 1 1111 223232221 2223446
Q ss_pred EEeecchHHHhh---cCC-cceEeCCCCCh-HHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCC
Q 002115 318 LITTRKEIVARC---MRS-TNVIYVNVLSE-IECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKG 379 (965)
Q Consensus 318 lvTtR~~~v~~~---~~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G 379 (965)
|.||........ ... ...+.+.++++ ++...++.+.. . .. .+....|++.+.|
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~~----~~~~~~l~~~~~g 228 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-FK----DKERTTIAQQVKG 228 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-SC----HHHHHHHHHHHTT
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-CC----HHHHHHHHHHhcC
Confidence 667766543322 111 45788999988 67776666532 1 11 2235667888877
No 186
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.00 E-value=6.8e-06 Score=80.35 Aligned_cols=116 Identities=15% Similarity=0.085 Sum_probs=72.5
Q ss_pred hhhcCceeEEEeccc-cccc-ccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccc-
Q 002115 560 WDHVKRLRSLLVESY-EYSW-SSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEK- 636 (965)
Q Consensus 560 ~~~~~~Lr~L~l~~~-~~~~-~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~- 636 (965)
....+.|++|.+.++ .... ....+...+...+.|++|+|++|.++ ......+...+...+.|++|+|++|. ++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~--~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~ 108 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN--DPVAFALAEMLKVNNTLKSLNVESNF-ISGS 108 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC--HHHHHHHHHHHHHCSSCCEEECCSSC-CCHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC--hHHHHHHHHHHHhCCCcCEEECcCCc-CCHH
Confidence 345677777777776 4311 01123444666777888888877765 44445566666667778888888777 543
Q ss_pred ----cchhhhccCCCcEEec--cCcccccc-----cCccccCCCCccEeecCCC
Q 002115 637 ----LPETLCELYNLEHLDI--SYCRNLRE-----LPQGIGKLRKLMYLENDGT 679 (965)
Q Consensus 637 ----lp~~i~~L~~L~~LdL--~~~~~l~~-----lP~~i~~L~~L~~L~l~~~ 679 (965)
+...+...+.|++|+| ++|. +.. +...+...++|++|++++|
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 4555666777888888 6666 332 3334455577777777776
No 187
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.98 E-value=3.9e-05 Score=82.62 Aligned_cols=154 Identities=16% Similarity=0.131 Sum_probs=86.2
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGK 284 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 284 (965)
...+.|+|++|+||||||+.+++. ....-...++++.+ .+...+...+... ...... ..+ .+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~~------~~~~~~~~~~~~~-----~~~~~~----~~~-~~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSAD------DFAQAMVEHLKKG-----TINEFR----NMY-KS 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHH------HHHHHHHHHHHHT-----CHHHHH----HHH-HT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEHH------HHHHHHHHHHHcC-----cHHHHH----HHh-cC
Confidence 457889999999999999999986 21111124455432 3333443333211 112221 222 23
Q ss_pred eEEEEEeCCCcchh--hchHhHHhhhcC-CCCCcEEEEeecch---------HHHhhcCCcceEeCCCCChHHHHHHHHH
Q 002115 285 KFLLVLDDLWNEVY--YKWEPFYKCLKN-GLHESKILITTRKE---------IVARCMRSTNVIYVNVLSEIECWSVFEQ 352 (965)
Q Consensus 285 r~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 352 (965)
.-+|++||+..... ...+.+...+.. ...|..||+||... .+...+.....+.+.+ +.++..+++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 56999999965322 122334333322 12355788887632 1222223335789999 99999999988
Q ss_pred HhccCCCccchhHHHHHHHHHHHHcCCChH
Q 002115 353 LAFFGRSMEECEKLENMGRQIVRKCKGLPL 382 (965)
Q Consensus 353 ~~~~~~~~~~~~~l~~~~~~i~~~c~GlPl 382 (965)
.+...... .+ ++....|++.+ |..-
T Consensus 178 ~~~~~~~~-l~---~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 178 KLKEFNLE-LR---KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHTTCC-CC---HHHHHHHHHHC-SSHH
T ss_pred HHHhcCCC-CC---HHHHHHHHHhC-CCHH
Confidence 76432221 11 23456677777 7654
No 188
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.97 E-value=1.6e-05 Score=74.25 Aligned_cols=113 Identities=18% Similarity=0.120 Sum_probs=68.9
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccc-cccccceEEEEcCCCCCHHHHHHHHH
Q 002115 179 EIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGV-KRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
+++|+...++++.+.+..... ...-|.|+|.+|+|||++|+.+++.... ...| + +.++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcc--------
Confidence 578999999999988754322 2224789999999999999999875211 1222 3 554432221
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecc
Q 002115 258 ESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRK 323 (965)
Q Consensus 258 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 323 (965)
.... ..+... +.-.|++|++..-.......+...+.......+||.||..
T Consensus 66 ----------~~~~---~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ----------PQLN---DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ----------SCHH---HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ----------hhhh---cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 0111 111111 2246899999876555555666666555556678888864
No 189
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.97 E-value=1.4e-05 Score=78.23 Aligned_cols=45 Identities=22% Similarity=0.255 Sum_probs=38.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..++||+.+++.+.+.+... ..+.+.|+|.+|+||||+|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998542 3446789999999999999999875
No 190
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.96 E-value=0.00011 Score=79.58 Aligned_cols=182 Identities=10% Similarity=0.057 Sum_probs=105.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccccccccc-ceEEEEcCCCCCHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFE-KRIWVCVSEPFDEFRIARAI 256 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 256 (965)
..++|.+..++.+..++... ....+.++|+.|+||||+|+.+.+... ...+. ....++.+.......+ +.+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~i-r~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDVV-RNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHHH-HTH
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHHH-HHH
Confidence 35789988888888888543 222388999999999999999987521 11111 1223333332222221 111
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchH-HHh-hcCCcc
Q 002115 257 IESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEI-VAR-CMRSTN 334 (965)
Q Consensus 257 ~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~-~~~~~~ 334 (965)
+..+.... ..+.+.+-++|+|++........+.+...+.......++|++|.... +.. ......
T Consensus 97 i~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 97 IKDFASTR--------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 (340)
T ss_dssp HHHHHHBC--------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHhhc--------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence 11111000 00123477899999976444455666666655555667777775432 111 112245
Q ss_pred eEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHH
Q 002115 335 VIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAK 385 (965)
Q Consensus 335 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~ 385 (965)
.+.+.+++.++..+.+...+-...- ... ++..+.|++.++|.+--+.
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~-~i~---~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIANVLVHEKL-KLS---PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTC-CBC---HHHHHHHHHHHTTCHHHHH
T ss_pred eEeccCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHH
Confidence 7889999999999888876632221 111 2346778889999887443
No 191
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.95 E-value=4.3e-06 Score=81.80 Aligned_cols=120 Identities=13% Similarity=0.069 Sum_probs=89.1
Q ss_pred cchHHhhcCCccceEEcCcc-cccccccchhhHHhhhhccCCCcEEEeCCccCccc-----cchhhhccCCCcEEeccCc
Q 002115 582 VLPQLFDKLTCLRALTLGVH-SLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEK-----LPETLCELYNLEHLDISYC 655 (965)
Q Consensus 582 ~l~~~~~~l~~Lr~L~L~~n-~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~-----lp~~i~~L~~L~~LdL~~~ 655 (965)
.+...+...+.|+.|+|++| .++ ......+...+...++|++|+|++|. ++. +...+...++|++|+|++|
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~--~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIP--VPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCC--HHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHhcCCCCCEEEecCCCCCC--HHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 35566788999999999988 776 55666777888888999999999999 553 5566777899999999999
Q ss_pred ccccc-----cCccccCCCCccEeec--CCCccccc----ccccCCCcccccccCceEecC
Q 002115 656 RNLRE-----LPQGIGKLRKLMYLEN--DGTYSLRY----LPVGIGELIRLRIVKEFVVGG 705 (965)
Q Consensus 656 ~~l~~-----lP~~i~~L~~L~~L~l--~~~~~~~~----~p~~i~~l~~L~~L~l~~~~~ 705 (965)
. +.. +...+...++|++|++ ++|..... +...+...++|+.|++..+..
T Consensus 104 ~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 104 F-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp C-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred c-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 8 543 4566778889999999 66743221 223344456777777655543
No 192
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.91 E-value=0.00056 Score=73.09 Aligned_cols=189 Identities=16% Similarity=0.085 Sum_probs=100.7
Q ss_pred CCccccchHHHHHHHHHHhcC----C--CCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHH
Q 002115 177 ESEIFGREEEKNELVNRLLCE----S--SKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEF 250 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~----~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (965)
-.+++|.++.++.+.+.+..+ . .......+-|.|+|++|+|||+||+.+++... ... .+.+..+.-.
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~---~~~i~~~~l~--- 83 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NST---FFSISSSDLV--- 83 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCE---EEEEECCSSC---
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCc---EEEEEhHHHH---
Confidence 346899998888888766311 0 00122346789999999999999999998620 111 2233333211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchh-----------hchHhHHhhhcC---CCCCcE
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVY-----------YKWEPFYKCLKN---GLHESK 316 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~---~~~gs~ 316 (965)
.... ......+...+...-..++.+|++|++..... .....+...+.. ...+..
T Consensus 84 -----------~~~~-g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 84 -----------SKWL-GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp -----------CSSC-CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred -----------hhhh-hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 0000 11112222222222236788999999965310 011223333322 223445
Q ss_pred EEEeecchH-HHhhc--CCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCC-hHhHHHHH
Q 002115 317 ILITTRKEI-VARCM--RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGL-PLAAKTIA 388 (965)
Q Consensus 317 ilvTtR~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl-Plai~~~~ 388 (965)
||.||.... +...+ .-...+.+...+.++..++++.+......... ......|++.+.|. +-.+..+.
T Consensus 152 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 555664331 11111 22356788888999999999887632221111 12356788888886 44455444
No 193
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.86 E-value=0.00029 Score=76.67 Aligned_cols=187 Identities=14% Similarity=0.096 Sum_probs=101.9
Q ss_pred CccccchHHHHHHHHHHhcC----CC--CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHH
Q 002115 178 SEIFGREEEKNELVNRLLCE----SS--KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFR 251 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~----~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 251 (965)
.+++|.+..++.+.+.+... .- ......+.|.|+|.+|+|||++|+.+++. .... .+.+..+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhc---
Confidence 46899999999998877421 00 00124557899999999999999999876 2222 23444432111
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHH-HHHhCCceEEEEEeCCCcc-----------hhhchHhHHhhhcCC----CCCc
Q 002115 252 IARAIIESLTGSASNFGEFQSLMQHI-QECVEGKKFLLVLDDLWNE-----------VYYKWEPFYKCLKNG----LHES 315 (965)
Q Consensus 252 ~~~~i~~~l~~~~~~~~~~~~l~~~l-~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~~~----~~gs 315 (965)
.. ..........+ ...-..++.+|+||++..- .......+...+... ..+.
T Consensus 156 -----------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 00 00111111222 2222356789999998431 011123344443321 2234
Q ss_pred EEEEeecch-HHHhhc--CCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCC-ChHhHHHHHH
Q 002115 316 KILITTRKE-IVARCM--RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKG-LPLAAKTIAS 389 (965)
Q Consensus 316 ~ilvTtR~~-~v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G-lPlai~~~~~ 389 (965)
.||.||... .+...+ .-...+.+...+.++..+++...+........ .+....|++.+.| .+-.+..++.
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 555566542 221111 11346788889999999988877633211111 2346678888888 5555655543
No 194
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.86 E-value=0.00036 Score=74.78 Aligned_cols=186 Identities=17% Similarity=0.153 Sum_probs=102.2
Q ss_pred CccccchHHHHHHHHHHhcC---C---CCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHH
Q 002115 178 SEIFGREEEKNELVNRLLCE---S---SKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFR 251 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~---~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 251 (965)
.+++|.+..++.+.+.+... . .......+-|.|+|.+|+|||+||+.+++. ....| +.|+.+ .
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~------~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchH------H
Confidence 56899999999998877311 0 011223467899999999999999999986 33322 223221 1
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHH-HHHhCCceEEEEEeCCCcchh-----------hchHhHHhhhc---CCCCCcE
Q 002115 252 IARAIIESLTGSASNFGEFQSLMQHI-QECVEGKKFLLVLDDLWNEVY-----------YKWEPFYKCLK---NGLHESK 316 (965)
Q Consensus 252 ~~~~i~~~l~~~~~~~~~~~~l~~~l-~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~---~~~~gs~ 316 (965)
+.... ....+.....+ ...-..++.+|++|++..-.. .....+...+. ....+..
T Consensus 87 ----l~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 87 ----LVSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp ----HHTTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred ----Hhhcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceE
Confidence 11110 01112222222 222235678999999964211 01233333332 2334556
Q ss_pred EEEeecchH-HHhhc--CCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCC-ChHhHHHHH
Q 002115 317 ILITTRKEI-VARCM--RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKG-LPLAAKTIA 388 (965)
Q Consensus 317 ilvTtR~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G-lPlai~~~~ 388 (965)
||.||.... +...+ .-...+.+...+.++-.++|+..+......... .....|++.+.| .+-.|..+.
T Consensus 157 vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~----~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTK----EDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCH----HHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCH----HHHHHHHHHcCCCCHHHHHHHH
Confidence 666776432 11111 113567788899999999999876432211122 235667888877 444444443
No 195
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.85 E-value=8.2e-06 Score=83.84 Aligned_cols=81 Identities=23% Similarity=0.231 Sum_probs=52.8
Q ss_pred hccCCCcEEEeCCccCccc---cchhhhccCCCcEEeccCcccccccCccccCCC--CccEeecCCCcccccccc-----
Q 002115 618 ENLLHLKYLNLAHQREIEK---LPETLCELYNLEHLDISYCRNLRELPQGIGKLR--KLMYLENDGTYSLRYLPV----- 687 (965)
Q Consensus 618 ~~L~~Lr~L~L~~~~~i~~---lp~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~--~L~~L~l~~~~~~~~~p~----- 687 (965)
.++++|++|+|++|. +.. +|..+.++++|++|+|++|. +..+ ..+..+. +|++|++.+|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 467778888888887 544 34566778888888888877 5554 2344444 788888887755444442
Q ss_pred --cCCCcccccccCce
Q 002115 688 --GIGELIRLRIVKEF 701 (965)
Q Consensus 688 --~i~~l~~L~~L~l~ 701 (965)
.+..+++|+.|+..
T Consensus 244 ~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 244 SAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHCTTCCEESSC
T ss_pred HHHHHHCcccCeECCc
Confidence 24567777777653
No 196
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.85 E-value=0.00025 Score=77.00 Aligned_cols=187 Identities=16% Similarity=0.101 Sum_probs=99.8
Q ss_pred CccccchHHHHHHHHHHhcC----C--CCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHH
Q 002115 178 SEIFGREEEKNELVNRLLCE----S--SKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFR 251 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~----~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 251 (965)
.+++|.+..++.+.+.+... . .......+-|.|+|++|+|||+||+.+++. ....| +.|..+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH------H
Confidence 46899999999998876321 0 001123346889999999999999999986 32222 223221 1
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhh-----------chHhHHhhhcC---CCCCcEE
Q 002115 252 IARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYY-----------KWEPFYKCLKN---GLHESKI 317 (965)
Q Consensus 252 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~~---~~~gs~i 317 (965)
+ ..... ......+...+...-..++.+|+||++...... ....+...+.. ...+..|
T Consensus 120 l----~~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 120 L----VSKWM-----GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp H----HSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred H----hhhhc-----chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 1 11110 011111222222222357889999999653211 12233333321 2234556
Q ss_pred EEeecchH-HHhhc--CCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCC-ChHhHHHHH
Q 002115 318 LITTRKEI-VARCM--RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKG-LPLAAKTIA 388 (965)
Q Consensus 318 lvTtR~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G-lPlai~~~~ 388 (965)
|.||.... +...+ .-...+.+...+.++..+++..++........ ......|++.+.| .+-.|..+.
T Consensus 191 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 65665431 11111 22456788889999999999887643221111 1235668888887 444454443
No 197
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.84 E-value=3e-06 Score=92.12 Aligned_cols=132 Identities=15% Similarity=0.165 Sum_probs=73.4
Q ss_pred hcCceeEEEeccccc-----cccc-ccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCcc
Q 002115 562 HVKRLRSLLVESYEY-----SWSS-EVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIE 635 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~-----~~~~-~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~ 635 (965)
.+++|++|.+.+... +++. ..+...+..+++|+.|.|++|. + ..++. + .+++|++|+|..|.+..
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~----~---l~l~~-~-~~~~L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN----N---LSIGK-K-PRPNLKSLEIISGGLPD 207 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB----T---CBCCS-C-BCTTCSEEEEECSBCCH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC----C---ceecc-c-cCCCCcEEEEecCCCCh
Confidence 678999998865421 1111 1255667888899999987431 1 12232 3 37889999998877222
Q ss_pred ccchhhh--ccCCCcEEeccCc--cc-----ccccCccc--cCCCCccEeecCCCcccccccccC---CCcccccccCce
Q 002115 636 KLPETLC--ELYNLEHLDISYC--RN-----LRELPQGI--GKLRKLMYLENDGTYSLRYLPVGI---GELIRLRIVKEF 701 (965)
Q Consensus 636 ~lp~~i~--~L~~L~~LdL~~~--~~-----l~~lP~~i--~~L~~L~~L~l~~~~~~~~~p~~i---~~l~~L~~L~l~ 701 (965)
.....++ ++++|++|+|+.+ .. +..+...+ ..+++|++|++.+|......+..+ ..+++|++|+++
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence 2223344 6888999888532 10 11121122 246788888887764332222111 234555555554
Q ss_pred E
Q 002115 702 V 702 (965)
Q Consensus 702 ~ 702 (965)
.
T Consensus 288 ~ 288 (362)
T 2ra8_A 288 A 288 (362)
T ss_dssp S
T ss_pred C
Confidence 3
No 198
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.84 E-value=2.1e-05 Score=78.17 Aligned_cols=118 Identities=20% Similarity=0.188 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCC
Q 002115 186 EKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSAS 265 (965)
Q Consensus 186 ~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 265 (965)
.++.+.+++..... ......+.|+|.+|+||||||+.+++. .......++|++++ .+...+......
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~--- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhcc---
Confidence 44555555543321 112268899999999999999999986 33333456676553 344444332211
Q ss_pred CCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHh--HHh-hhcCC-CCCcEEEEeecc
Q 002115 266 NFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEP--FYK-CLKNG-LHESKILITTRK 323 (965)
Q Consensus 266 ~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~ilvTtR~ 323 (965)
.........+.+ .-+|||||++......|.. +.. .+... ..+..+|+||..
T Consensus 104 --~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 --QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp --CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred --chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 112333333322 2399999997644334432 222 22221 235578888874
No 199
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.82 E-value=3.3e-06 Score=80.18 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=19.6
Q ss_pred cccceEeeccCccCcCC-CcCCCCCCCCCeEeEcCCcchH
Q 002115 904 PRLSSLSIRRCPKLKAL-PDRLLQKTTLQALTIGECPILE 942 (965)
Q Consensus 904 ~~L~~L~L~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~ 942 (965)
++|+.|+|++|+.++.- -..+..+++|++|+|++||.++
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred CCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 35666666666544320 0122345566666666666443
No 200
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.76 E-value=0.00099 Score=70.54 Aligned_cols=183 Identities=15% Similarity=0.136 Sum_probs=97.8
Q ss_pred CccccchHHHHHHHHHHhcCCC------CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESS------KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFR 251 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 251 (965)
.+++|.+..++.+.+.+..+.. .-....+.+.|+|++|+||||+|+.+++. .... .+.+..+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh---
Confidence 4689999999999887743100 00123457899999999999999999876 2222 23344332110
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHH-HHHHhCCceEEEEEeCCCcchh-----------hchHhHHhhhc---CC--CCC
Q 002115 252 IARAIIESLTGSASNFGEFQSLMQH-IQECVEGKKFLLVLDDLWNEVY-----------YKWEPFYKCLK---NG--LHE 314 (965)
Q Consensus 252 ~~~~i~~~l~~~~~~~~~~~~l~~~-l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~---~~--~~g 314 (965)
.. .......... +......++.+|++|++..... .....+...+. .. ..+
T Consensus 93 -----------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 -----------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 00 0111222222 2222235678999999954210 00112222222 11 123
Q ss_pred cEEEEeecchH-----HHhhcCCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChH-hHHHH
Q 002115 315 SKILITTRKEI-----VARCMRSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPL-AAKTI 387 (965)
Q Consensus 315 s~ilvTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPl-ai~~~ 387 (965)
..||.||.... +...+ ...+.+...+.++...++...+........ .+....|++.+.|.+- ++..+
T Consensus 160 v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 45666666432 22211 346777777888888888776532211111 2345678888888775 44444
No 201
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.76 E-value=0.00016 Score=76.41 Aligned_cols=149 Identities=13% Similarity=0.014 Sum_probs=94.1
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccc-ccccccceEEEEcCC-CCCHHHHHHHHHHH
Q 002115 182 GREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDG-VKRNFEKRIWVCVSE-PFDEFRIARAIIES 259 (965)
Q Consensus 182 Gr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~ 259 (965)
|-++.++.+...+... ......++|++|.||||+|+.+.+... .+.......++..+. ...+.. .+++.+.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 3455566676666432 256899999999999999999976310 111122335555442 233322 2334443
Q ss_pred hcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecch-HHHhhcCCcceEeC
Q 002115 260 LTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKE-IVARCMRSTNVIYV 338 (965)
Q Consensus 260 l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~l 338 (965)
+.... ..+++-++|+|++..-+....+.+...+-...+.+.+|++|.+. .+...+... .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 32211 12567799999998766667788888887766777877776443 333333334 9999
Q ss_pred CCCChHHHHHHHHHHh
Q 002115 339 NVLSEIECWSVFEQLA 354 (965)
Q Consensus 339 ~~L~~~~~~~lf~~~~ 354 (965)
.++++++..+.+.+.+
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998775
No 202
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.72 E-value=0.00035 Score=77.43 Aligned_cols=114 Identities=9% Similarity=0.112 Sum_probs=58.4
Q ss_pred ccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHH-hhhhccCCCcEEEeCCc
Q 002115 553 HLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVR-TNIENLLHLKYLNLAHQ 631 (965)
Q Consensus 553 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp-~~i~~L~~Lr~L~L~~~ 631 (965)
..+....|.+|.+|+++.+..+..+.+..+-..+|..+..|+.+.+..+ +..++ ..+..+.+|+.+.+..+
T Consensus 76 t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--------~~~I~~~aF~~c~~L~~i~lp~~ 147 (394)
T 4gt6_A 76 TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--------VTEIDSEAFHHCEELDTVTIPEG 147 (394)
T ss_dssp CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--------CSEECTTTTTTCTTCCEEECCTT
T ss_pred eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--------cceehhhhhhhhcccccccccce
Confidence 3345555656677777666554322233333445666666666655411 22222 23456666777666543
Q ss_pred cCccccc-hhhhccCCCcEEeccCcccccccCccccCCCCccEeecCC
Q 002115 632 REIEKLP-ETLCELYNLEHLDISYCRNLRELPQGIGKLRKLMYLENDG 678 (965)
Q Consensus 632 ~~i~~lp-~~i~~L~~L~~LdL~~~~~l~~lP~~i~~L~~L~~L~l~~ 678 (965)
+..++ ..+..+.+|+.+.+..+ +..+........+|+.+.+..
T Consensus 148 --~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~ 191 (394)
T 4gt6_A 148 --VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPA 191 (394)
T ss_dssp --CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECT
T ss_pred --eeeecccceecccccccccccce--eeEeccccccccceeEEEECC
Confidence 33333 24566666666666543 344433332334566665543
No 203
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.72 E-value=2.3e-05 Score=72.89 Aligned_cols=110 Identities=10% Similarity=0.058 Sum_probs=63.2
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHH
Q 002115 179 EIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIE 258 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 258 (965)
.++|++..++++.+.+..... ...-|.|+|.+|+|||++|+.+++... ..+.++++. -.......
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~--~~~~~~~~--- 69 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVE--YLIDMPME--- 69 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTT--HHHHCHHH---
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhh--CChHhhhh---
Confidence 578999999988888754321 122477999999999999999987522 222222221 11111111
Q ss_pred HhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCC-CCCcEEEEeecc
Q 002115 259 SLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNG-LHESKILITTRK 323 (965)
Q Consensus 259 ~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~ 323 (965)
+.... +.-.|++|++..........+...+... ..+.+||.||..
T Consensus 70 ------------------~~~~a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 70 ------------------LLQKA--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ------------------HHHHT--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ------------------HHHhC--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 11111 2346889999875544445555555443 345678888754
No 204
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.70 E-value=0.00022 Score=76.31 Aligned_cols=136 Identities=14% Similarity=0.226 Sum_probs=76.4
Q ss_pred ccccchHHHHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHH
Q 002115 179 EIFGREEEKNELVNRLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARA 255 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 255 (965)
.++|.+..++.+...+..... ........+.++|.+|+||||+|+.+++. ....-...+.+.++....... ...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~~-~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHA-VSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTTH-HHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeeccccccccc-HHH
Confidence 578999998888888765311 11223468999999999999999999875 222222345566554332211 111
Q ss_pred HHHHhcCCC--CCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC-----------CCcEEEEeec
Q 002115 256 IIESLTGSA--SNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL-----------HESKILITTR 322 (965)
Q Consensus 256 i~~~l~~~~--~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR 322 (965)
+ ++... ........+...+.. ...-+++||++..........+...+..+. ....||.||.
T Consensus 95 l---~g~~~~~~~~~~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp H---HCCCTTSTTTTTCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred h---cCCCCccccccccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 1 11111 011111222222221 344699999997755555666666654321 2344777776
Q ss_pred c
Q 002115 323 K 323 (965)
Q Consensus 323 ~ 323 (965)
.
T Consensus 169 ~ 169 (311)
T 4fcw_A 169 L 169 (311)
T ss_dssp T
T ss_pred c
Confidence 5
No 205
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.70 E-value=5.4e-05 Score=73.63 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=64.1
Q ss_pred chHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcC
Q 002115 183 REEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTG 262 (965)
Q Consensus 183 r~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 262 (965)
.+...+.+.+++..-.. .....+.|+|.+|+||||||+.+++.......+ .+++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 33444555444433211 134589999999999999999999863211121 233443 34444444444332
Q ss_pred CCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHh--HHhhhcCC-CCCcEEEEeecc
Q 002115 263 SASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEP--FYKCLKNG-LHESKILITTRK 323 (965)
Q Consensus 263 ~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 323 (965)
.... .....+. +.-+|||||++....+.|.. +...+... ..|..+|+||..
T Consensus 89 ~~~~-----~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKDT-----KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCCS-----HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chHH-----HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 2111 2222221 45689999997433334432 33333222 246788888864
No 206
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.67 E-value=0.00072 Score=71.63 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=90.0
Q ss_pred CccccchHHHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHH
Q 002115 178 SEIFGREEEKNELVNRLLCESS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEF 250 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (965)
.+++|.+..++.+.+++...-. -+-...+.|.|+|++|+|||+||+.+++. .... ++.++ ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hH
Confidence 4689999988888887643100 00123457899999999999999999986 3222 22222 22
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchh--------------hchHhHHhhhcC--CCCC
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVY--------------YKWEPFYKCLKN--GLHE 314 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~g 314 (965)
.+.. ...+.. ...+...+.......+.+|++|++..-.. .....+...+.. ...+
T Consensus 84 ~l~~----~~~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELLT----MWFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHH----HHHTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHh----hhcCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 2222 222211 11222333333345678999999964211 012334444432 2235
Q ss_pred cEEEEeecchH-HHhh-cC---CcceEeCCCCChHHHHHHHHHHhc
Q 002115 315 SKILITTRKEI-VARC-MR---STNVIYVNVLSEIECWSVFEQLAF 355 (965)
Q Consensus 315 s~ilvTtR~~~-v~~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~ 355 (965)
..||.||.... +... .. -...+.+...+.++-.++++...-
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~ 200 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 200 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHc
Confidence 56777775442 2221 12 234788999999998888877653
No 207
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.64 E-value=0.0015 Score=73.10 Aligned_cols=189 Identities=16% Similarity=0.106 Sum_probs=99.1
Q ss_pred CCccccchHHHHHHHHHHhcC----CC--CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHH
Q 002115 177 ESEIFGREEEKNELVNRLLCE----SS--KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEF 250 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~----~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (965)
-.+++|.+..++.+.+.+..+ .- ......+-|.|+|++|+|||+||+.+++. .. ..-++.++...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~~----~~~~~~v~~~~--- 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--AN----NSTFFSISSSD--- 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--CC----SSEEEEECCC----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--cC----CCCEEEEeHHH---
Confidence 356899999999988876321 00 01123467899999999999999999986 21 12233333211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcch-------hhch----HhHHhhhcC---CCCCcE
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEV-------YYKW----EPFYKCLKN---GLHESK 316 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-------~~~~----~~l~~~l~~---~~~gs~ 316 (965)
+. ....+. ....+..+.. ..-..++.+|+||++.... .... ..+...+.. ...+..
T Consensus 204 -l~----~~~~g~--~~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 204 -LV----SKWLGE--SEKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ---------------CCCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred -HH----hhhcch--HHHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 11 111111 1112222222 2223567899999996421 0111 122222222 134556
Q ss_pred EEEeecchH-HHhh-c-CCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCC-ChHhHHHHH
Q 002115 317 ILITTRKEI-VARC-M-RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKG-LPLAAKTIA 388 (965)
Q Consensus 317 ilvTtR~~~-v~~~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~G-lPlai~~~~ 388 (965)
||.||.... +... . .-...+.+...+.++...+|+.++......... .....|++.+.| .+-.|..+.
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~----~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTE----ADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCH----HHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHcCCCCHHHHHHHH
Confidence 666775432 1111 1 113467788888888888888876322111111 234667888888 444444443
No 208
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.61 E-value=3.5e-05 Score=79.09 Aligned_cols=85 Identities=20% Similarity=0.243 Sum_probs=66.0
Q ss_pred HhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccccchhhhccC--CCcEEeccCcccccccCc
Q 002115 586 LFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEKLPETLCELY--NLEHLDISYCRNLRELPQ 663 (965)
Q Consensus 586 ~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~lp~~i~~L~--~L~~LdL~~~~~l~~lP~ 663 (965)
...+++.|+.|+|++|.++ .+..+|..+..+++|++|+|++|. +..+.. +..+. +|++|+|++|.....+|.
T Consensus 165 ~~~~l~~L~~L~Ls~N~l~----~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 165 IEENIPELLSLNLSNNRLY----RLDDMSSIVQKAPNLKILNLSGNE-LKSERE-LDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HHHHCTTCCEEECTTSCCC----CCGGGTTHHHHSTTCCEEECTTSC-CCSGGG-GGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred HHhhCCCCCEEECCCCCCC----CCccchhHHhhCCCCCEEECCCCc-cCCchh-hhhcccCCcceEEccCCcCccccCc
Confidence 3467899999999988764 234566778899999999999999 777643 66666 999999999995455552
Q ss_pred -------cccCCCCccEeec
Q 002115 664 -------GIGKLRKLMYLEN 676 (965)
Q Consensus 664 -------~i~~L~~L~~L~l 676 (965)
.+..+++|+.|+-
T Consensus 239 ~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 239 QSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHHHHCTTCCEESS
T ss_pred chhHHHHHHHHCcccCeECC
Confidence 3577899999863
No 209
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.56 E-value=0.0011 Score=73.01 Aligned_cols=187 Identities=14% Similarity=0.082 Sum_probs=98.1
Q ss_pred CCccccchHHHHHHHHHHhcCCC------CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHH
Q 002115 177 ESEIFGREEEKNELVNRLLCESS------KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEF 250 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (965)
-.+++|.+..++.+.+++..... ......+-|.|+|.+|+|||+||+.+++. .... .+.++.+.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~~- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTSK- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhcc-
Confidence 35799999999999988732100 00123457899999999999999999875 2222 233333321110
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcc-----------hhhchHhHHhhhcC----CCCCc
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNE-----------VYYKWEPFYKCLKN----GLHES 315 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~~----~~~gs 315 (965)
.. ......+...+...-...+.+|+||++... .......+...+.. .....
T Consensus 188 ---------~~-----g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 188 ---------YV-----GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp ------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred ---------cc-----chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 00 001111122222222345679999999542 11111222222221 12234
Q ss_pred EEEEeecch-HHHhh-cCC-cceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChH-hHHHH
Q 002115 316 KILITTRKE-IVARC-MRS-TNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPL-AAKTI 387 (965)
Q Consensus 316 ~ilvTtR~~-~v~~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPl-ai~~~ 387 (965)
.||.||... .+... ... ...+.+...+.++..+++...+........ .+....|++.+.|..- ++..+
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 555566542 22111 111 246888999999999999887643222111 2245678888887543 44444
No 210
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.55 E-value=0.00032 Score=85.82 Aligned_cols=154 Identities=23% Similarity=0.306 Sum_probs=81.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccc---ccccc-c-ceEEEEcCCCCCHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDG---VKRNF-E-KRIWVCVSEPFDEFRI 252 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~-~~~wv~vs~~~~~~~~ 252 (965)
..++||+++++++++.|... ....+.++|.+|+||||+|+.+++... +.... . ..++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 45899999999999998653 223468999999999999999987621 00011 1 233443322100
Q ss_pred HHHHHHHhcCCCCCCCCHHH-HHHHHHHHhC-CceEEEEEeCCCcch--------hhchHhHHhhhcCCCCCcEEEEeec
Q 002115 253 ARAIIESLTGSASNFGEFQS-LMQHIQECVE-GKKFLLVLDDLWNEV--------YYKWEPFYKCLKNGLHESKILITTR 322 (965)
Q Consensus 253 ~~~i~~~l~~~~~~~~~~~~-l~~~l~~~l~-~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvTtR 322 (965)
+.. ...+... +...+...-. +++.+|++|++..-. .+....+...+..+ +..+|.+|.
T Consensus 240 ---------g~~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~at~ 307 (854)
T 1qvr_A 240 ---------GAK-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCCEEEEEC
T ss_pred ---------cCc-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEEecC
Confidence 000 0112222 2222222222 468999999996521 11112244444332 344565554
Q ss_pred chHHH-----hhc-CCcceEeCCCCChHHHHHHHHHH
Q 002115 323 KEIVA-----RCM-RSTNVIYVNVLSEIECWSVFEQL 353 (965)
Q Consensus 323 ~~~v~-----~~~-~~~~~~~l~~L~~~~~~~lf~~~ 353 (965)
..... ..+ .....+.+.+++.++..++++..
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 43321 111 12346889999999999998754
No 211
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.54 E-value=0.00029 Score=73.22 Aligned_cols=132 Identities=14% Similarity=0.140 Sum_probs=68.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
..++|.+..+.++.+.+..... ...-|.|+|.+|+|||++|+.+++.. ...-...+.++++.- .. ..+..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~--~~~~~~~~~v~~~~~-~~-~~~~~-- 75 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAAL-NE-NLLDS-- 75 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTS--TTTTSCEEEEEGGGS-CH-HHHHH--
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhc--CccCCCeEEEecCCC-Ch-hHHHH--
Confidence 3588999999988877754322 22357799999999999999999762 111112345555543 22 22221
Q ss_pred HHhcCCCCCC-CCH-HHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCC-----------CCCcEEEEeecc
Q 002115 258 ESLTGSASNF-GEF-QSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNG-----------LHESKILITTRK 323 (965)
Q Consensus 258 ~~l~~~~~~~-~~~-~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtR~ 323 (965)
.+.+..... ... ......+.. ...-+|+||++..........+...+..+ ..+.+||.||..
T Consensus 76 -~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 76 -ELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp -HHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred -HhcCCcccccccccccccchhhh---cCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 121111000 000 000001111 12348999999775444444555554432 134678888865
No 212
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.54 E-value=0.0011 Score=74.92 Aligned_cols=185 Identities=13% Similarity=0.121 Sum_probs=101.1
Q ss_pred CccccchHHHHHHHHHHhcCCCC-------CCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSK-------EQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEF 250 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (965)
..++|.+..++++.+++...... +....+-|.|+|.+|+|||++|+.+.+. ....| +.++.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEEch------
Confidence 35899999999998877532000 0123456889999999999999999876 33222 333321
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcch-----------hhchHhHHhhhcC--CCCCcEE
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEV-----------YYKWEPFYKCLKN--GLHESKI 317 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~--~~~gs~i 317 (965)
.+...+. ......+...+.....+++.+|+||++..-. ......+...+.. ...+..|
T Consensus 273 ----~l~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 ----EIMSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp ----HHHTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred ----Hhhhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 1111110 1111223333444445678899999993210 1122334444432 2234456
Q ss_pred EEeecchH-HHhhc----CCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCC-hHhHHHH
Q 002115 318 LITTRKEI-VARCM----RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGL-PLAAKTI 387 (965)
Q Consensus 318 lvTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl-Plai~~~ 387 (965)
|.||.... +...+ .-...+.+...+.++-.++|+.++..-. ...... ..++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~-l~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC-BCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC-Ccchhh----HHHHHHHccCCcHHHHHHH
Confidence 66665442 22221 1234688999999999999988763221 111122 24466667664 4444433
No 213
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.53 E-value=0.00055 Score=77.18 Aligned_cols=96 Identities=8% Similarity=0.013 Sum_probs=59.4
Q ss_pred EEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEee----------c----chHH-HhhcCCcceEeCCCCChHHHHHHHH
Q 002115 287 LLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITT----------R----KEIV-ARCMRSTNVIYVNVLSEIECWSVFE 351 (965)
Q Consensus 287 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt----------R----~~~v-~~~~~~~~~~~l~~L~~~~~~~lf~ 351 (965)
++++|++...+.+..+.+...+...... .+|+.| . ...+ .........+.+.+++.++..+++.
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 8999999877667778887777665444 344343 2 1111 1112234567999999999999998
Q ss_pred HHhccCCCccchhHHHHHHHHHHHHc-CCChHhHHHH
Q 002115 352 QLAFFGRSMEECEKLENMGRQIVRKC-KGLPLAAKTI 387 (965)
Q Consensus 352 ~~~~~~~~~~~~~~l~~~~~~i~~~c-~GlPlai~~~ 387 (965)
..+-.....- . ++....|++.+ +|.|..+..+
T Consensus 377 ~~~~~~~~~~-~---~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 377 IRAQTEGINI-S---EEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHTCCB-C---HHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHhCCCC-C---HHHHHHHHHHccCCCHHHHHHH
Confidence 8753211111 1 23456677777 7888755544
No 214
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.50 E-value=0.00021 Score=80.76 Aligned_cols=147 Identities=18% Similarity=0.184 Sum_probs=79.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccc-----cceEEEEcCCCCCHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNF-----EKRIWVCVSEPFDEFRI 252 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-----~~~~wv~vs~~~~~~~~ 252 (965)
..++||+.+++.+++.+... ...-+.|+|.+|+|||++|+.+++. +...+ ...-++.++-.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~------~~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC------
Confidence 35999999999999999653 2235679999999999999999876 21111 11112222111
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchHHHh----
Q 002115 253 ARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEIVAR---- 328 (965)
Q Consensus 253 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~---- 328 (965)
....+.. ...... .+...-..++.+|++|.- .+....+...+..+ ..++|.+|.......
T Consensus 246 -----~~~~g~~--e~~~~~---~~~~~~~~~~~iLfiD~~----~~a~~~L~~~L~~g--~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 -----TKYRGEF--EDRLKK---VMDEIRQAGNIILFIDAA----IDASNILKPSLARG--ELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp --------------CTTHHH---HHHHHHTCCCCEEEECC------------CCCTTSS--SCEEEEECCTTTTHHHHTT
T ss_pred -----ccccchH--HHHHHH---HHHHHHhcCCeEEEEeCc----hhHHHHHHHhhcCC--CEEEEecCCHHHHHHHhhc
Confidence 0000000 111222 222223356788999921 12222333333322 345666665433111
Q ss_pred ---hcCCcceEeCCCCChHHHHHHHHHHh
Q 002115 329 ---CMRSTNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 329 ---~~~~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
...-...+.+.+.+.++..+++...+
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11123478999999999999998765
No 215
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.49 E-value=1.8e-05 Score=75.21 Aligned_cols=39 Identities=10% Similarity=0.082 Sum_probs=19.4
Q ss_pred ccccccccccccccccCcccccccccccCcccceEeeccCccCc
Q 002115 875 KLKQLRFDEMDVLEEWDFGTAINGEIMIMPRLSSLSIRRCPKLK 918 (965)
Q Consensus 875 ~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~ 918 (965)
+|++|+|++|+++++-.+... . .+++|++|+|++|+.++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L----~-~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIAL----H-HFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHG----G-GCTTCCEEEEESCTTCC
T ss_pred CCCEEEcCCCCcCCHHHHHHH----h-cCCCCCEEECCCCCCCC
Confidence 455555555555444322111 0 35666666666666554
No 216
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.45 E-value=0.00013 Score=68.04 Aligned_cols=86 Identities=12% Similarity=-0.005 Sum_probs=50.2
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCce
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKK 285 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 285 (965)
..++|+|..|+|||||++.+++.....+ + ..+++....-... . +..+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g-~-~~~~~~~~~~~~~-----------------------------~-~~~~~ 84 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAG-K-NAAYIDAASMPLT-----------------------------D-AAFEA 84 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTT-C-CEEEEETTTSCCC-----------------------------G-GGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcC-C-cEEEEcHHHhhHH-----------------------------H-HHhCC
Confidence 4899999999999999999998632211 1 2566665442221 0 11345
Q ss_pred EEEEEeCCCcchhhchHhHHhhhcCC-CCCc-EEEEeecc
Q 002115 286 FLLVLDDLWNEVYYKWEPFYKCLKNG-LHES-KILITTRK 323 (965)
Q Consensus 286 ~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~ilvTtR~ 323 (965)
-+|||||+.......-+.+...+... ..|. .||+||+.
T Consensus 85 ~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 85 EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp SEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 68899999653322222233333221 1233 48888874
No 217
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.44 E-value=0.0015 Score=69.60 Aligned_cols=153 Identities=14% Similarity=0.157 Sum_probs=84.8
Q ss_pred CccccchHHHHHHHHHHhcC--CCC------CCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCC-
Q 002115 178 SEIFGREEEKNELVNRLLCE--SSK------EQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFD- 248 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~--~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~- 248 (965)
..++|.+..++.+...+... ... .......+.|+|.+|+|||++|+.+.+. .... .+.+..+.-.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--l~~~---~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--ANAP---FIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEcchhcccC
Confidence 45899999999998877541 000 0112346789999999999999999876 2222 33444433211
Q ss_pred ------HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhc------------hHhHHhhhcC
Q 002115 249 ------EFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYK------------WEPFYKCLKN 310 (965)
Q Consensus 249 ------~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~------------~~~l~~~l~~ 310 (965)
....+..+.....+ .+.. .+.+.+|+||++....... ...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGG-------------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTT-------------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHhhH-------------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 11222222221100 0000 1236799999997643222 3445444443
Q ss_pred C----------CCCcEEEEeec----ch-----HHHhhcCCcceEeCCCCChHHHHHHHHH
Q 002115 311 G----------LHESKILITTR----KE-----IVARCMRSTNVIYVNVLSEIECWSVFEQ 352 (965)
Q Consensus 311 ~----------~~gs~ilvTtR----~~-----~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 352 (965)
. ..+..+|.|+. .. .+...+ ...+.+.+++.++..+++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~--~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL--PIRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTC--CEEEECCCCCHHHHHHHHHS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhC--CceEEcCCcCHHHHHHHHHh
Confidence 2 12445566542 11 112211 24689999999999888875
No 218
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.43 E-value=0.00036 Score=73.94 Aligned_cols=131 Identities=13% Similarity=0.142 Sum_probs=71.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccc-ccccccceEEEEcCCCCCHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDG-VKRNFEKRIWVCVSEPFDEFRIARAI 256 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~i 256 (965)
+.++|+...+.++.+.+..... ....|.|+|.+|+|||++|+.+++... ... ..+.|+++.-. ..++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~---~~v~v~~~~~~--~~l~~~- 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACSARSDR---PLVTLNCAALN--ESLLES- 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHSSCSSS---CCCEEECSSCC--HHHHHH-
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhCcccCC---CeEEEeCCCCC--hHHHHH-
Confidence 3589999999999888765432 223577999999999999999987521 112 22345544322 222222
Q ss_pred HHHhcCCCCCC-CCH-HHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC-----------CCcEEEEeecc
Q 002115 257 IESLTGSASNF-GEF-QSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL-----------HESKILITTRK 323 (965)
Q Consensus 257 ~~~l~~~~~~~-~~~-~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 323 (965)
.+.+...+. ... ......+.. . ..-.|+||++..........+...+.... ...+||.||..
T Consensus 72 --~lfg~~~g~~tg~~~~~~g~~~~-a--~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 72 --ELFGHEKGAFTGADKRREGRFVE-A--DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp --HHTCCCSSCCC---CCCCCHHHH-H--TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred --HhcCccccccCchhhhhcCHHHh-c--CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 222221110 000 000011111 1 12368999998754444455555554431 34678888865
No 219
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.40 E-value=0.0015 Score=70.26 Aligned_cols=177 Identities=18% Similarity=0.203 Sum_probs=94.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
+.++|.+..++.+...+..... .+.....+.|+|++|+||||||+.+++. ....|. ....+-.....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~sg~~~~~~~------- 91 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTSGPVLVKQG------- 91 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEETTTCCSHH-------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEechHhcCHH-------
Confidence 4578988877777666643210 0123457899999999999999999986 322221 11111111111
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC------------------CCcEEE-
Q 002115 258 ESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL------------------HESKIL- 318 (965)
Q Consensus 258 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~il- 318 (965)
.+...+ ..+ .++-++++|++..-.....+.+...+.... ....++
T Consensus 92 --------------~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 92 --------------DMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp --------------HHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred --------------HHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 111111 112 234477889886532223333433222111 011222
Q ss_pred EeecchHHHhhcCC--cceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHH
Q 002115 319 ITTRKEIVARCMRS--TNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 319 vTtR~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 387 (965)
.|++...+...+.. .-.+.+++.+.++-.+++.+.+-..... ...+.+..|++.+.|.|-.+..+
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~----~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE----IEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC----BCHHHHHHHHHTSTTCHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHhcCCChHHHHHH
Confidence 34443322211111 2357899999999999998876322211 11345788999999999765443
No 220
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.38 E-value=0.0034 Score=64.69 Aligned_cols=158 Identities=15% Similarity=0.117 Sum_probs=83.3
Q ss_pred CCccccchHHHHHHHHHH---hcCCC---CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHH
Q 002115 177 ESEIFGREEEKNELVNRL---LCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEF 250 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L---~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (965)
-.+++|.+..++++.+.+ ..... -+....+-+.|+|.+|+||||+|+.+++. ....| +.+..+.-.+
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT--
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH--
Confidence 346899988777766543 22110 00112345889999999999999999876 22222 3333322110
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchh--------------hchHhHHhhhcC--CCCC
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVY--------------YKWEPFYKCLKN--GLHE 314 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~g 314 (965)
.. .......+...+.......+.++++|++..-.. .....+...+.. ...+
T Consensus 84 --------~~-----~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 84 --------MF-----VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp --------SC-----CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred --------Hh-----hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 00 011122333334444445678999999832110 111223332322 2234
Q ss_pred cEEEEeecchH-HHhhc-C---CcceEeCCCCChHHHHHHHHHHh
Q 002115 315 SKILITTRKEI-VARCM-R---STNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 315 s~ilvTtR~~~-v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
..||.||.... +.... . -...+.+...+.++-.++++...
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 56666775442 21211 1 13467788888888888887765
No 221
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.004 Score=67.27 Aligned_cols=178 Identities=17% Similarity=0.120 Sum_probs=96.7
Q ss_pred CccccchHHHHHHHHHHhcC----C---CCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHH
Q 002115 178 SEIFGREEEKNELVNRLLCE----S---SKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEF 250 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~----~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (965)
.++.|-++.+++|.+.+.-+ + .-+-..++-|.++|++|.|||.||+++++. ....| +.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhc--
Confidence 46789988888887765321 0 001234567889999999999999999987 33333 3444332110
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHH-HHHHhCCceEEEEEeCCCcchh----------h----chHhHHhhhcC--CCC
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQH-IQECVEGKKFLLVLDDLWNEVY----------Y----KWEPFYKCLKN--GLH 313 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~~-l~~~l~~kr~LlVlDdv~~~~~----------~----~~~~l~~~l~~--~~~ 313 (965)
.. ..+.+...+. +...-...+.+|++|+++.-.. . ....+...+.. ...
T Consensus 221 ------------k~--vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 221 ------------KY--IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp ------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred ------------cc--cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 00 0011111222 2222235689999999864210 0 12223333332 233
Q ss_pred CcEEEEeecchH-HHhhc----CCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCCh
Q 002115 314 ESKILITTRKEI-VARCM----RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLP 381 (965)
Q Consensus 314 gs~ilvTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 381 (965)
+..||.||.... +-.++ .-...+.+..-+.++-.++|+.+.-.-. ....-+ ...|++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN-LTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB-CCSSCC----HHHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC-CCccCC----HHHHHHHCCCCC
Confidence 445666775432 21111 2356888988888888889887653211 111122 345777777743
No 222
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.30 E-value=0.0022 Score=77.62 Aligned_cols=155 Identities=18% Similarity=0.184 Sum_probs=86.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccc---ccc-cccceEEE-EcCCCCCHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDG---VKR-NFEKRIWV-CVSEPFDEFRI 252 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~-~F~~~~wv-~vs~~~~~~~~ 252 (965)
..++||+.+++++++.|... ...-+.|+|.+|+||||+|+.+.+... +.. .....+|. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 46899999999999998643 233578999999999999999987521 111 11233332 11110
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHh-CCceEEEEEeCCCcc---------hhhchHhHHhhhcCCCCCcEEEEeec
Q 002115 253 ARAIIESLTGSASNFGEFQSLMQHIQECV-EGKKFLLVLDDLWNE---------VYYKWEPFYKCLKNGLHESKILITTR 322 (965)
Q Consensus 253 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR 322 (965)
+.+. ......+.....+.+.+ ..++.+|++|++..- ..+....+...+. ..+..+|.+|.
T Consensus 254 -------~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~ 323 (758)
T 1r6b_X 254 -------LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTT 323 (758)
T ss_dssp --------CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEEC
T ss_pred -------hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeC
Confidence 0111 11123333333333333 346789999999643 1111111222222 23456667666
Q ss_pred chHHHhhc-------CCcceEeCCCCChHHHHHHHHHHh
Q 002115 323 KEIVARCM-------RSTNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 323 ~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
........ .....+.+...+.++..+++....
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 54432111 112368899999999988887654
No 223
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.23 E-value=0.00081 Score=81.27 Aligned_cols=155 Identities=15% Similarity=0.228 Sum_probs=90.1
Q ss_pred CccccchHHHHHHHHHHhcCCCC---CCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSK---EQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIAR 254 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 254 (965)
..++|.+..++.+...+...... .......+.++|.+|+|||++|+.+.+. ..+.-...+.++++.-.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~~--- 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKHS--- 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccccc---
Confidence 46899999999988888653321 1223457999999999999999999876 222223345555543221100
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC-----------CCcEEEEeecc
Q 002115 255 AIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL-----------HESKILITTRK 323 (965)
Q Consensus 255 ~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 323 (965)
. ....+...++. ...-+|+||++..........+...+..+. ....||+||..
T Consensus 566 -----------~--~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 566 -----------T--SGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp -----------C--C---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred -----------c--ccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0 01111112221 233489999997765555666666665421 34688888873
Q ss_pred -----h----HHHhhc-----CC-cceEeCCCCChHHHHHHHHHH
Q 002115 324 -----E----IVARCM-----RS-TNVIYVNVLSEIECWSVFEQL 353 (965)
Q Consensus 324 -----~----~v~~~~-----~~-~~~~~l~~L~~~~~~~lf~~~ 353 (965)
. .+...+ .- ...+.+.++++++..+++...
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 1 111111 11 247888999988887777654
No 224
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.0035 Score=68.74 Aligned_cols=52 Identities=23% Similarity=0.216 Sum_probs=38.6
Q ss_pred CCccccchHHHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 177 ESEIFGREEEKNELVNRLLCESS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-.++.|-++.+++|.+.+.-+-. -+-..++-|.++|++|.|||+||+++++.
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34688999888888776532100 02235667899999999999999999987
No 225
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.15 E-value=0.0047 Score=67.86 Aligned_cols=78 Identities=10% Similarity=0.173 Sum_probs=36.0
Q ss_pred hcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHh-hhhccCCCcEEEeCCccCccccchh
Q 002115 562 HVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRT-NIENLLHLKYLNLAHQREIEKLPET 640 (965)
Q Consensus 562 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~-~i~~L~~Lr~L~L~~~~~i~~lp~~ 640 (965)
...+|+++.+-.. +..+-..+|.++.+|+.++|..+ +..+++ .+.+. .|..+.+..+ ++.++..
T Consensus 44 ~~~~i~~v~ip~~----vt~Ig~~aF~~C~~L~~I~lp~~--------v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~ 108 (379)
T 4h09_A 44 DRDRISEVRVNSG----ITSIGEANFNSCYNMTKVTVAST--------VTSIGDGAFADT-KLQSYTGMER--VKKFGDY 108 (379)
T ss_dssp GGGGCSEEEECTT----EEEECTTTTTTCTTCCEEEECTT--------CCEECTTTTTTC-CCCEEEECTT--CCEECTT
T ss_pred cccCCEEEEeCCC----ccChHHHHhhCCCCCCEEEeCCc--------ceEechhhhcCC-CCceEECCce--eeEeccc
Confidence 4455666655432 33333445666666666666421 222322 23333 4555555432 3444432
Q ss_pred hhccCCCcEEeccC
Q 002115 641 LCELYNLEHLDISY 654 (965)
Q Consensus 641 i~~L~~L~~LdL~~ 654 (965)
.-...+|+.+.+..
T Consensus 109 aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 109 VFQGTDLDDFEFPG 122 (379)
T ss_dssp TTTTCCCSEEECCT
T ss_pred eeccCCcccccCCC
Confidence 22223566666654
No 226
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.0047 Score=67.85 Aligned_cols=177 Identities=19% Similarity=0.187 Sum_probs=96.0
Q ss_pred CccccchHHHHHHHHHHhcC---CC----CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHH
Q 002115 178 SEIFGREEEKNELVNRLLCE---SS----KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEF 250 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~---~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (965)
.++.|-++.+++|.+.+.-+ .. -+-..++-|.++|++|.|||+||+++++. ....| +.|..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc--
Confidence 46789988888877765321 00 01235678899999999999999999987 33332 3344332111
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHH-HHHhCCceEEEEEeCCCcch----------h----hchHhHHhhhcC--CCC
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQHI-QECVEGKKFLLVLDDLWNEV----------Y----YKWEPFYKCLKN--GLH 313 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~~l-~~~l~~kr~LlVlDdv~~~~----------~----~~~~~l~~~l~~--~~~ 313 (965)
.. ..+.......+ ...-...+.+|++|+++.-. . .....+...+.. ...
T Consensus 254 ------------k~--~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 ------------KY--IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp ------------SS--SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred ------------cc--chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 00 01111122222 22223578999999996410 0 012233333332 234
Q ss_pred CcEEEEeecchH-HHhhc-C---CcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCC
Q 002115 314 ESKILITTRKEI-VARCM-R---STNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGL 380 (965)
Q Consensus 314 gs~ilvTtR~~~-v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl 380 (965)
+..||.||.... +-..+ . -...+.+..-+.++-.++|+.+.-.-. .....+ ...+++.+.|.
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-~~~d~d----l~~lA~~t~G~ 386 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVK-KTGEFD----FEAAVKMSDGF 386 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSC-BCSCCC----HHHHHHTCCSC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHhCCCC
Confidence 556777775443 22211 1 145677887788888888876653221 111122 24567777764
No 227
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.06 E-value=0.0037 Score=75.45 Aligned_cols=149 Identities=17% Similarity=0.149 Sum_probs=80.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccc---ccccccceEEEEcCCCCCHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDG---VKRNFEKRIWVCVSEPFDEFRIAR 254 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~F~~~~wv~vs~~~~~~~~~~ 254 (965)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.+.+... +-......-++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 468999999999999996532 23478999999999999999987520 000111111222211
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecchHHHhh-----
Q 002115 255 AIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRKEIVARC----- 329 (965)
Q Consensus 255 ~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~----- 329 (965)
.....+. -... +...+......++.+|++|.- .+.-..+...+.. ...++|.||........
T Consensus 245 --g~~~~G~--~e~~---l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 245 --GTKYRGE--FEDR---LKKVMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp ------------CTT---HHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTCS
T ss_pred --cccccch--HHHH---HHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHhc--CCEEEEeCCChHHHHHHhhccH
Confidence 0000000 0111 222333333467889999921 1122223333332 23566666654431110
Q ss_pred --cCCcceEeCCCCChHHHHHHHHHHh
Q 002115 330 --MRSTNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 330 --~~~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
..-...+.+...+.++..+++....
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0113578999999999999998654
No 228
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.03 E-value=0.0046 Score=69.07 Aligned_cols=179 Identities=15% Similarity=0.105 Sum_probs=95.5
Q ss_pred CccccchHHHHHHHHHHhcCCC------CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESS------KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFR 251 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 251 (965)
.+++|.++.++++.+.+..-.. -+....+-|.|+|++|.||||||+.+++. ....| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH--
Confidence 4689999877776665432100 00112334789999999999999999986 22222 33443321110
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchh--------------hchHhHHhhhcC--CCCCc
Q 002115 252 IARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVY--------------YKWEPFYKCLKN--GLHES 315 (965)
Q Consensus 252 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~gs 315 (965)
+ . ..........+.......+.+|++|++..-.. .....+...+.. ...+.
T Consensus 89 --------~----~-g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 --------F----V-GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp --------C----T-THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred --------H----h-cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 0 0 00112223334444456789999999954210 112333333321 12355
Q ss_pred EEEEeecchHHHh-h-cC---CcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCCh
Q 002115 316 KILITTRKEIVAR-C-MR---STNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLP 381 (965)
Q Consensus 316 ~ilvTtR~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 381 (965)
.||.||....... . .. -...+.+...+.++-.++++.++-... .....+ ...|++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-Ccchhh----HHHHHHhcCCCc
Confidence 6677776543221 1 11 133778888888888888877653221 111111 234777888876
No 229
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.0028 Score=69.37 Aligned_cols=177 Identities=18% Similarity=0.125 Sum_probs=94.9
Q ss_pred CccccchHHHHHHHHHHhc----CC---CCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHH
Q 002115 178 SEIFGREEEKNELVNRLLC----ES---SKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEF 250 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~----~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (965)
.++.|-++.+++|.+.+.- ++ .-+-..++-|.++|++|.|||+||+++++. ....| +.|..+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L~--- 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSELV--- 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGC---
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHhh---
Confidence 3578999888888775421 10 001235678889999999999999999987 33333 334333211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHH-HHHHHhCCceEEEEEeCCCcchh----------h----chHhHHhhhcCC--CC
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQ-HIQECVEGKKFLLVLDDLWNEVY----------Y----KWEPFYKCLKNG--LH 313 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~-~l~~~l~~kr~LlVlDdv~~~~~----------~----~~~~l~~~l~~~--~~ 313 (965)
... ..+.+...+ .+...-...+++|++|++..... . ....+...+... ..
T Consensus 281 -----------sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 281 -----------QKY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp -----------CCS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred -----------ccc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 000 011111222 22222236689999999864110 0 111222333222 23
Q ss_pred CcEEEEeecch-HHHhhc----CCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCC
Q 002115 314 ESKILITTRKE-IVARCM----RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGL 380 (965)
Q Consensus 314 gs~ilvTtR~~-~v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl 380 (965)
+..||.||... .+-..+ .-...+.+..-+.++-.++|+.+.-.-. ....-+ ...|++.|.|.
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIR----WELISRLCPNS 414 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCC----HHHHHHHCCSC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCC----HHHHHHHCCCC
Confidence 44556676433 221111 2256788888888888889887653221 111122 34577778774
No 230
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.90 E-value=0.003 Score=67.96 Aligned_cols=152 Identities=13% Similarity=0.108 Sum_probs=85.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
..++|+++.++.+...+... .-+.++|.+|+|||+||+.+.+. ....| ..+..+......++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~l~g~~~ 93 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLDF---HRIQFTPDLLPSDLIGTMI 93 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCCE---EEEECCTTCCHHHHHEEEE
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEecCCCCChhhcCCcee
Confidence 35889999999998888643 25889999999999999999875 32222 2334433333333221110
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhCC--ceEEEEEeCCCcchhhchHhHHhhhcCC-----------CCCcEEEEeecch
Q 002115 258 ESLTGSASNFGEFQSLMQHIQECVEG--KKFLLVLDDLWNEVYYKWEPFYKCLKNG-----------LHESKILITTRKE 324 (965)
Q Consensus 258 ~~l~~~~~~~~~~~~l~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtR~~ 324 (965)
.....+.. ....+ ...++++|++..........+...+..+ .....|+.|+...
T Consensus 94 ---~~~~~~~~----------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 94 ---YNQHKGNF----------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp ---EETTTTEE----------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred ---ecCCCCce----------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 00000000 00000 1248999999765444445555544322 2234555555522
Q ss_pred H------HHh-hcCCcc-eEeCCCCChHHHHHHHHHHhc
Q 002115 325 I------VAR-CMRSTN-VIYVNVLSEIECWSVFEQLAF 355 (965)
Q Consensus 325 ~------v~~-~~~~~~-~~~l~~L~~~~~~~lf~~~~~ 355 (965)
. +.. ...-.. .+.+.+.+.++-.+++.+.+.
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 1 111 111122 578889999999888888764
No 231
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.90 E-value=0.0021 Score=77.76 Aligned_cols=133 Identities=17% Similarity=0.273 Sum_probs=74.4
Q ss_pred CccccchHHHHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIAR 254 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 254 (965)
..++|.+..++.+...+..... +.......+.++|.+|+|||++|+.+.+. .. ...+.++++.-.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchhh---
Confidence 3588999999888887754321 11234457999999999999999999876 22 2234455443221100
Q ss_pred HHHHHhcCCCCCCCCH---HHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC-----------CCcEEEEe
Q 002115 255 AIIESLTGSASNFGEF---QSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL-----------HESKILIT 320 (965)
Q Consensus 255 ~i~~~l~~~~~~~~~~---~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvT 320 (965)
...+.+..++.... ..+...++ +...-+|+||++.....+....+...+..+. ....||.|
T Consensus 530 --~~~l~g~~~g~~g~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp --CSSSCCCCSCSHHHHHTTHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred --HhhhcCCCCCCcCccccchHHHHHH---hCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 00111111111000 11222222 2446799999998765555666666665431 23457778
Q ss_pred ecc
Q 002115 321 TRK 323 (965)
Q Consensus 321 tR~ 323 (965)
|..
T Consensus 605 sN~ 607 (758)
T 1r6b_X 605 TNA 607 (758)
T ss_dssp ECS
T ss_pred cCc
Confidence 754
No 232
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.0019 Score=70.97 Aligned_cols=177 Identities=16% Similarity=0.138 Sum_probs=93.7
Q ss_pred CccccchHHHHHHHHHHhc----CCC---CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHH
Q 002115 178 SEIFGREEEKNELVNRLLC----ESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEF 250 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~----~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (965)
.++.|-++.+++|.+.+.. ++- -+-..++-|.++|++|.|||+||+++++. ....| +.|..+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~--- 252 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLV--- 252 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGC---
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhh---
Confidence 4688999988888776432 110 02235678899999999999999999987 33332 333333211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhCCceEEEEEeCCCcc-------hh---h----chHhHHhhhcCC--CC
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQHIQE-CVEGKKFLLVLDDLWNE-------VY---Y----KWEPFYKCLKNG--LH 313 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~-------~~---~----~~~~l~~~l~~~--~~ 313 (965)
... ..+.+...+.+.. .-...+++|++|+++.- .. . ....+...+... ..
T Consensus 253 -----------~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 253 -----------QMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp -----------SSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred -----------hcc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 000 0111122222222 12245899999998431 00 0 112233333322 23
Q ss_pred CcEEEEeecchH-HHhhc-C---CcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCC
Q 002115 314 ESKILITTRKEI-VARCM-R---STNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGL 380 (965)
Q Consensus 314 gs~ilvTtR~~~-v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl 380 (965)
+..||.||.... +-..+ . -...+.+..-+.++-.++|+.+.-.-. ....-+ ...|++.+.|.
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT-TDDDIN----WQELARSTDEF 386 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSC-BCSCCC----HHHHHHHCSSC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCC-CCCcCC----HHHHHHhCCCC
Confidence 445666775433 22221 1 245778888888888888876542211 111112 34567777764
No 233
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.88 E-value=0.0039 Score=62.47 Aligned_cols=85 Identities=22% Similarity=0.233 Sum_probs=53.3
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcC------------CCCCCCCHHH
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTG------------SASNFGEFQS 272 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~------------~~~~~~~~~~ 272 (965)
-.++.|+|.+|+||||||..+.. ..-..++|++....++...+.. +.+.++. ......+...
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 35999999999999999999986 1123577888776566655543 3332221 1111222234
Q ss_pred HHHHHHHHhCCceEEEEEeCCCc
Q 002115 273 LMQHIQECVEGKKFLLVLDDLWN 295 (965)
Q Consensus 273 l~~~l~~~l~~kr~LlVlDdv~~ 295 (965)
....++..+..+.-+||+|.+..
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 45555555544577999999754
No 234
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.81 E-value=0.00061 Score=70.94 Aligned_cols=157 Identities=18% Similarity=0.142 Sum_probs=79.4
Q ss_pred CccccchHHHHHHHHHHhcCCCC------CCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSK------EQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFR 251 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 251 (965)
.+++|.+..++.+.+.+..-... +....+-+.|+|.+|+|||++|+.+++. ....| +.+..+.-.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~---- 81 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPF---FSMGGSSFI---- 81 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCC---CCCCSCTTT----
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEechHHHH----
Confidence 46899988777777655310000 0011234779999999999999999986 22222 111111100
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchh---------------hchHhHHhhhcCC---CC
Q 002115 252 IARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVY---------------YKWEPFYKCLKNG---LH 313 (965)
Q Consensus 252 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~---------------~~~~~l~~~l~~~---~~ 313 (965)
..+.+.. ......+ +......++.+|++|++..-.. .....+...+... ..
T Consensus 82 ------~~~~~~~--~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 82 ------EMFVGLG--ASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp ------TSCSSSC--SSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred ------HhhcchH--HHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 0011110 1111111 1112224567999999954211 1122233333221 12
Q ss_pred CcEEEEeecchHH-Hhh-cC---CcceEeCCCCChHHHHHHHHHHh
Q 002115 314 ESKILITTRKEIV-ARC-MR---STNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 314 gs~ilvTtR~~~v-~~~-~~---~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
...||.||..... ... .. -...+.+...+.++..++++..+
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 2456667765431 111 11 13467788888888888887765
No 235
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.81 E-value=0.004 Score=76.07 Aligned_cols=135 Identities=16% Similarity=0.262 Sum_probs=74.9
Q ss_pred ccccchHHHHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHH
Q 002115 179 EIFGREEEKNELVNRLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARA 255 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 255 (965)
.++|.+..++.+...+..... +.......+.|+|..|+|||++|+.+.+. ....-...+.++++.-.....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~~---- 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHA---- 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSGG----
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchhH----
Confidence 579999999998888764321 11223468999999999999999999875 211112334555543322100
Q ss_pred HHHHhcCCCC---CCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhhchHhHHhhhcCCC-----------CCcEEEEee
Q 002115 256 IIESLTGSAS---NFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYYKWEPFYKCLKNGL-----------HESKILITT 321 (965)
Q Consensus 256 i~~~l~~~~~---~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTt 321 (965)
...+.+..+ +......+...+.. ...-+|+||++.....+....+...+..+. .+..||+||
T Consensus 633 -~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 633 -VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp -GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred -HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 011111100 00111222222322 234689999997765556666777666442 244588888
Q ss_pred cc
Q 002115 322 RK 323 (965)
Q Consensus 322 R~ 323 (965)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 236
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.79 E-value=0.00096 Score=70.66 Aligned_cols=56 Identities=16% Similarity=0.027 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEc
Q 002115 184 EEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCV 243 (965)
Q Consensus 184 ~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 243 (965)
....+.+.+++..... .....+.|+|.+|+|||+||+.+++.... ..-..++++++
T Consensus 134 ~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~ 189 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEH
T ss_pred HHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEH
Confidence 3344555566654321 12457889999999999999999986320 22224556654
No 237
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.78 E-value=0.0099 Score=65.25 Aligned_cols=121 Identities=11% Similarity=0.090 Sum_probs=71.7
Q ss_pred ceEEEEEEEeCCCccchhhHhhhcCceeEEEecccccccccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhc
Q 002115 540 KKVLHLMLNLDGRHLVSISIWDHVKRLRSLLVESYEYSWSSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIEN 619 (965)
Q Consensus 540 ~~~r~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~ 619 (965)
.+++.+.+. +++..+....|.+|.+|+++.+-.. +..+-..+|.++ .|..+.+.. .+..++.....
T Consensus 46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~----v~~Ig~~aF~~c-~l~~i~~~~--------~l~~I~~~aF~ 111 (379)
T 4h09_A 46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST----VTSIGDGAFADT-KLQSYTGME--------RVKKFGDYVFQ 111 (379)
T ss_dssp GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT----CCEECTTTTTTC-CCCEEEECT--------TCCEECTTTTT
T ss_pred cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc----ceEechhhhcCC-CCceEECCc--------eeeEeccceec
Confidence 466777664 4455567778889999999998543 334445568777 466666642 12334443333
Q ss_pred cCCCcEEEeCCccCccccch-hhhccCCCcEEeccCcccccccC-ccccCCCCccEeecCCC
Q 002115 620 LLHLKYLNLAHQREIEKLPE-TLCELYNLEHLDISYCRNLRELP-QGIGKLRKLMYLENDGT 679 (965)
Q Consensus 620 L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~LdL~~~~~l~~lP-~~i~~L~~L~~L~l~~~ 679 (965)
..+|+.+.+..+ +..+.. .+.+ .+|+.+.+..+ +..+. ..+..+.+|..+.+..+
T Consensus 112 ~~~L~~i~lp~~--~~~i~~~~F~~-~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 112 GTDLDDFEFPGA--TTEIGNYIFYN-SSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp TCCCSEEECCTT--CCEECTTTTTT-CCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTT
T ss_pred cCCcccccCCCc--ccccccccccc-ceeeeeeccce--eeccccchhcccccccccccccc
Confidence 457999998765 444444 3333 35666655543 33332 33566777777766544
No 238
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.73 E-value=0.0072 Score=69.38 Aligned_cols=162 Identities=17% Similarity=0.195 Sum_probs=78.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
.+++|.+...+.+.+.+.-..-.......++.++|++|+||||||+.+... ....| .-|.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHH
Confidence 457898888777765543211001124558999999999999999999876 32222 2233333222111111110
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcchhh----chHhHHhhhcCCC---------------CCcEEE
Q 002115 258 ESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEVYY----KWEPFYKCLKNGL---------------HESKIL 318 (965)
Q Consensus 258 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~il 318 (965)
..++. ........+.. .....-++++|++...... ....+...+.... ....||
T Consensus 156 ~~ig~------~~~~~~~~~~~-a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVGA------MPGRIIQGMKK-AGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHT-TCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhcc------CchHHHHHHHH-hhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 00000 00111122222 2223348889999753322 1233444432211 234566
Q ss_pred EeecchH-----HHhhcCCcceEeCCCCChHHHHHHHHHHh
Q 002115 319 ITTRKEI-----VARCMRSTNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 319 vTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
.||.... +... ...+.+.+++.++-.+++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R---~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDR---MEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHH---EEEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhh---cceeeeCCCCHHHHHHHHHHHH
Confidence 6665432 2222 2478899999988888877654
No 239
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.70 E-value=0.009 Score=70.79 Aligned_cols=179 Identities=13% Similarity=0.107 Sum_probs=95.9
Q ss_pred CccccchHHHHHHHHHHh----cCCC---CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHH
Q 002115 178 SEIFGREEEKNELVNRLL----CESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEF 250 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~----~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (965)
.++.|.++.+++|.+++. .++- -+-..++-|.++|++|.|||+||+.+++. ...+| +.|+.++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHH-----
Confidence 357788877777766542 2111 02235678999999999999999999987 43333 3343221
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcch-------hh----chHhHHhhhcCC--CCCcEE
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEV-------YY----KWEPFYKCLKNG--LHESKI 317 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-------~~----~~~~l~~~l~~~--~~gs~i 317 (965)
+.. .. .......+...+.......+.+|++|+++.-. .+ ....+...+... ..+..|
T Consensus 274 -----l~s----k~-~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 274 -----IMS----KL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp -----HHS----SC-TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred -----hhc----cc-chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 111 00 01111223333333445678999999985411 00 112222222221 223345
Q ss_pred EEeecch-HHHhhcC----CcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCCh
Q 002115 318 LITTRKE-IVARCMR----STNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLP 381 (965)
Q Consensus 318 lvTtR~~-~v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 381 (965)
|.||... .+-..+. -...+++..-+.++-.++|+.+.-... .....+ ...|++++.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~-~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE-ECTTCC----HHHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHhcCCCC
Confidence 5565433 3322221 145788888888888888887652211 111122 345777887754
No 240
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.65 E-value=0.0011 Score=69.03 Aligned_cols=70 Identities=23% Similarity=0.345 Sum_probs=45.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEc--CCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCV--SEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECV 281 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l 281 (965)
..+++.|+|++|+||||||.++... .-..++|+++ .+..+. . ..+.+.....+.+.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~---~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------Y---NTDFNVFVDDIARAM 180 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------C---BCCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------h---hcCHHHHHHHHHHHH
Confidence 3457889999999999999999864 1123567776 332110 0 034555555566666
Q ss_pred CCceEEEEEeCCCc
Q 002115 282 EGKKFLLVLDDLWN 295 (965)
Q Consensus 282 ~~kr~LlVlDdv~~ 295 (965)
...+ +||+|++..
T Consensus 181 ~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 181 LQHR-VIVIDSLKN 193 (331)
T ss_dssp HHCS-EEEEECCTT
T ss_pred hhCC-EEEEecccc
Confidence 5555 999999954
No 241
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.0071 Score=65.52 Aligned_cols=177 Identities=19% Similarity=0.144 Sum_probs=93.3
Q ss_pred CccccchHHHHHHHHHHhcC---CC----CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHH
Q 002115 178 SEIFGREEEKNELVNRLLCE---SS----KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEF 250 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~---~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (965)
.++.|-++.+++|.+.+.-+ .. -+-..++-|.++|++|.|||.||+++++. ....| +.|..+.-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~--- 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELI--- 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGC---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhh---
Confidence 45788888888877765321 10 02234578999999999999999999987 33333 233332211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhCCceEEEEEeCCCcch----------h----hchHhHHhhhcC--CCC
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQHIQE-CVEGKKFLLVLDDLWNEV----------Y----YKWEPFYKCLKN--GLH 313 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~----------~----~~~~~l~~~l~~--~~~ 313 (965)
... ..+.+...+.+.. .-...+.+|++|+++.-. . .....+...+.. ...
T Consensus 254 -----------sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 254 -----------QKY--LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp -----------CSS--SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred -----------hcc--CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 000 0111222222222 223568999999985310 0 011223333322 234
Q ss_pred CcEEEEeecchH-HHhhc-C---CcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCC
Q 002115 314 ESKILITTRKEI-VARCM-R---STNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGL 380 (965)
Q Consensus 314 gs~ilvTtR~~~-v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl 380 (965)
+..||.||.... +-.++ . -...+.+..-+.++-.++|+.+.-.- .....-+ ...|++.+.|.
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~-~l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM-NLSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS-CBCSCCC----HHHHHHHCCSC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC-CCCCcCC----HHHHHHhCCCC
Confidence 455666775433 22222 1 13467787778888888887765321 1111122 24566777664
No 242
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.40 E-value=0.012 Score=61.74 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..++.+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568889999999999999999987
No 243
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.31 E-value=0.017 Score=63.24 Aligned_cols=50 Identities=26% Similarity=0.285 Sum_probs=35.1
Q ss_pred ccccchHHHHHHHHHHh----cCC--------------------CCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 179 EIFGREEEKNELVNRLL----CES--------------------SKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~----~~~--------------------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.++|.+..++.+...+. ... .........+.++|.+|+|||++|+.+.+.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 57888888888877662 000 000112346889999999999999999976
No 244
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.26 E-value=0.075 Score=57.14 Aligned_cols=157 Identities=11% Similarity=-0.074 Sum_probs=99.1
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhCC
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQE-CVEG 283 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~l~~ 283 (965)
.++..++|..|.||++.|+.+.+... ...|+....+.+....+.+++... +.. -+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~---------------------~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAIFSL---------------------CQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHHHHH---------------------HHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHHHHH---------------------hcCcCCcc
Confidence 45899999999999999988876521 123432222223333344333322 221 1346
Q ss_pred ceEEEEEeCCCc-chhhchHhHHhhhcCCCCCcEEEEeecc-------hHHHhh-cCCcceEeCCCCChHHHHHHHHHHh
Q 002115 284 KKFLLVLDDLWN-EVYYKWEPFYKCLKNGLHESKILITTRK-------EIVARC-MRSTNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 284 kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~-------~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
++-++|+|++.. .+...++.+...+....+++.+|+++.. ..+... ......++..+++.++....+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 677889999866 4455677888877766667777776632 233333 2345788999999999998887776
Q ss_pred ccCCCccchhHHHHHHHHHHHHcCCChHhHHHH
Q 002115 355 FFGRSMEECEKLENMGRQIVRKCKGLPLAAKTI 387 (965)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~ 387 (965)
-..+- ... .+.+..+++.++|.+.++...
T Consensus 156 ~~~g~-~i~---~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLNL-ELD---DAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHTTC-EEC---HHHHHHHHHSSTTCHHHHHHH
T ss_pred HHcCC-CCC---HHHHHHHHHHhchHHHHHHHH
Confidence 43221 111 234677899999988877653
No 245
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.18 E-value=0.13 Score=52.45 Aligned_cols=157 Identities=15% Similarity=0.122 Sum_probs=77.5
Q ss_pred CccccchHHHHHHHHHHhcCCCC------CCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHH
Q 002115 178 SEIFGREEEKNELVNRLLCESSK------EQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFR 251 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 251 (965)
.+++|.+..+.++.+....-... +-.-.+-+.|+|.+|+||||||+.+++.. .. ..+.+... .
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~--~~---~~i~~~~~------~ 84 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RV---PFITASGS------D 84 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT--TC---CEEEEEHH------H
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--CC---CEEEeeHH------H
Confidence 46889887666655433211000 00111228999999999999999999763 21 22333221 1
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcch----------hhc----hHhHHhhhcCCCC--Cc
Q 002115 252 IARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEV----------YYK----WEPFYKCLKNGLH--ES 315 (965)
Q Consensus 252 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~----------~~~----~~~l~~~l~~~~~--gs 315 (965)
+..... . .....+...++..-.....++++|++.... ... ...+...+..+.. ..
T Consensus 85 ----~~~~~~----~-~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~ 155 (254)
T 1ixz_A 85 ----FVEMFV----G-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 155 (254)
T ss_dssp ----HHHSCT----T-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCE
T ss_pred ----HHHHHh----h-HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCE
Confidence 111100 0 001112222222223456899999984210 011 1233333433322 22
Q ss_pred EEEEeecchHHHh-hc----CCcceEeCCCCChHHHHHHHHHHh
Q 002115 316 KILITTRKEIVAR-CM----RSTNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 316 ~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
.++.||....+.. .. .-...+.+...+.++-.++++..+
T Consensus 156 i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 156 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred EEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 3444555443321 11 124467888888888888887665
No 246
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.17 E-value=0.012 Score=59.80 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=53.5
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccc----cccceEEEEcCCCCCHHHHHHHHHHHhcCCC---------CCCCCHH
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKR----NFEKRIWVCVSEPFDEFRIARAIIESLTGSA---------SNFGEFQ 271 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------~~~~~~~ 271 (965)
-.++.|+|.+|+|||||+..+........ .-..++|+.....++...+. .+++.++... ....+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 34999999999999999999886421211 12467898877765555443 3344443211 0111222
Q ss_pred H---HHHHHHHHhC-CceEEEEEeCCCc
Q 002115 272 S---LMQHIQECVE-GKKFLLVLDDLWN 295 (965)
Q Consensus 272 ~---l~~~l~~~l~-~kr~LlVlDdv~~ 295 (965)
+ ....+.+.+. .+.-+||+|.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2 2233444443 4677999999864
No 247
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.06 E-value=0.018 Score=69.41 Aligned_cols=157 Identities=13% Similarity=0.129 Sum_probs=84.3
Q ss_pred CccccchHHHHHHHHHHhcC----C---CCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHH
Q 002115 178 SEIFGREEEKNELVNRLLCE----S---SKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEF 250 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~----~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (965)
.+++|.+..++++.+++... . .-.-.....|.|+|.+|+||||||+.+.+. ....| +.+..+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH-----
Confidence 46899999888888877431 0 001123457899999999999999999876 33332 3333211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcch-----------hhchHhHHhhhcCC--CCCcEE
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEV-----------YYKWEPFYKCLKNG--LHESKI 317 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~--~~gs~i 317 (965)
+ ..... ......+...++........++++|++.... ......+...+... ..+..+
T Consensus 274 -----l----~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 274 -----I----MSKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp -----H----SSSST-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred -----h----hhhhh-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 1 01000 0111122223333334567899999984311 01112233333222 233455
Q ss_pred EEeecch-HHHhhcC----CcceEeCCCCChHHHHHHHHHHh
Q 002115 318 LITTRKE-IVARCMR----STNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 318 lvTtR~~-~v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
|.||... .+...+. -...+.+...+.++-.+++...+
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 5566543 2222111 12456788888888888887665
No 248
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.05 E-value=0.039 Score=57.36 Aligned_cols=159 Identities=15% Similarity=0.085 Sum_probs=78.9
Q ss_pred CCCccccchHHHHHHHHHHhcCCCC------CCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCH
Q 002115 176 DESEIFGREEEKNELVNRLLCESSK------EQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDE 249 (965)
Q Consensus 176 ~~~~~vGr~~~~~~i~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 249 (965)
.-.+++|.++.++++.+....-... .-.-.+-+.|+|.+|+||||||+.++... . ...+.+...
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~--~---~~~i~~~~~----- 107 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS----- 107 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH-----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc--C---CCEEEecHH-----
Confidence 3457899887766665543211000 00011228999999999999999999763 2 123333321
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCcch----------hhch----HhHHhhhcCCCC--
Q 002115 250 FRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWNEV----------YYKW----EPFYKCLKNGLH-- 313 (965)
Q Consensus 250 ~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~----~~l~~~l~~~~~-- 313 (965)
. +..... ......+...++..-.....++|+|++.... ...+ ..+...+..+..
T Consensus 108 -~----~~~~~~-----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 108 -D----FVEMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp -H----HHHSTT-----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred -H----HHHHHh-----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 1 111100 0001112222222223456899999984210 0111 223333333322
Q ss_pred CcEEEEeecchHHH-hh----cCCcceEeCCCCChHHHHHHHHHHh
Q 002115 314 ESKILITTRKEIVA-RC----MRSTNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 314 gs~ilvTtR~~~v~-~~----~~~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
...++.||....+. .. ..-...+.+...+.++-.++++.++
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 22334455443321 11 1224578888888888888887665
No 249
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.94 E-value=0.061 Score=60.38 Aligned_cols=176 Identities=15% Similarity=0.098 Sum_probs=90.2
Q ss_pred CCccccchHHHHHHHHHHh---cCCC---CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHH
Q 002115 177 ESEIFGREEEKNELVNRLL---CESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEF 250 (965)
Q Consensus 177 ~~~~vGr~~~~~~i~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (965)
-.+++|.++.++++.+... .... -+..-.+-|.|+|.+|+||||||+.+++.. .. ..+.++.+.-.+
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~~---~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RV---PFITASGSDFVE-- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--TC---CEEEEEGGGGTS--
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEehhHHHH--
Confidence 4568999877666655432 2110 001112338999999999999999999862 22 234444332110
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC----CceEEEEEeCCCcch----------hhc----hHhHHhhhcCCC
Q 002115 251 RIARAIIESLTGSASNFGEFQSLMQHIQECVE----GKKFLLVLDDLWNEV----------YYK----WEPFYKCLKNGL 312 (965)
Q Consensus 251 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~----~kr~LlVlDdv~~~~----------~~~----~~~l~~~l~~~~ 312 (965)
.. .......+...++ ..+.++++|++..-. ... ...+...+..+.
T Consensus 103 ------------~~-----~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 103 ------------MF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp ------------SC-----TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred ------------hh-----hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 00 0111122223332 235799999995311 011 123333333322
Q ss_pred --CCcEEEEeecchHHHh-hc----CCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCCh
Q 002115 313 --HESKILITTRKEIVAR-CM----RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLP 381 (965)
Q Consensus 313 --~gs~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 381 (965)
.+..|+.||....+.. .+ .-...+.+...+.++-.++++.++-+-. ...... ...|++.+.|..
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~-l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC-CCCSST----THHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCC-CChHHH----HHHHHHhcCCCC
Confidence 2344555665554321 11 1235788888888888888877652211 111111 234666776654
No 250
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.85 E-value=0.0044 Score=59.78 Aligned_cols=37 Identities=14% Similarity=0.043 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 187 KNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 187 ~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+..+..++.. -++...+.|+|++|.||||+|..+++.
T Consensus 45 ~~~l~~~~~~-----iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKG-----TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHT-----CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-----CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 5555555532 123347999999999999999888876
No 251
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.83 E-value=0.087 Score=54.43 Aligned_cols=155 Identities=16% Similarity=0.190 Sum_probs=79.6
Q ss_pred CccccchHHHHHHHHHHhcCCC--------CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCH
Q 002115 178 SEIFGREEEKNELVNRLLCESS--------KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDE 249 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~--------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 249 (965)
.++.|-++.++.+.+.+..+-. +-..... +.|+|++|.||||||+.++.... . ..+++..+.-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~--~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESG--L---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTT--C---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcC--C---CEEEEEcHHHHhh
Confidence 4578888888777765421100 0011222 99999999999999999997622 1 2344443321110
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hCCceEEEEEeCCCcch-----------hhchHhHHhhhcCCC--CCc
Q 002115 250 FRIARAIIESLTGSASNFGEFQSLMQHIQEC-VEGKKFLLVLDDLWNEV-----------YYKWEPFYKCLKNGL--HES 315 (965)
Q Consensus 250 ~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~~--~gs 315 (965)
...+.......+.+. -...+.++++|++.... ......+...+..+. ...
T Consensus 84 ----------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 84 ----------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp ----------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred ----------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 000001111112221 13457899999985410 001122333343332 233
Q ss_pred EEEEeecchHHHh-hc----CCcceEeCCCCChHHHHHHHHHHh
Q 002115 316 KILITTRKEIVAR-CM----RSTNVIYVNVLSEIECWSVFEQLA 354 (965)
Q Consensus 316 ~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~ 354 (965)
-++.+|....+.. .. .-...+.+...+.++-.++|+...
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 4455555443321 11 224577888888888888888765
No 252
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.70 E-value=0.024 Score=57.11 Aligned_cols=114 Identities=20% Similarity=0.114 Sum_probs=61.4
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCC--------------------
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSAS-------------------- 265 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-------------------- 265 (965)
.++.|+|.+|+|||||++.+..... ..=..++|+.... ....+...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 4899999999999999999885421 1112455665543 3444443332 3321100
Q ss_pred ---CCCCHHHHHHHHHHHhC---CceEEEEEeCCCcc---hhhchHhHHhhhcC--CCCCcEEEEeecch
Q 002115 266 ---NFGEFQSLMQHIQECVE---GKKFLLVLDDLWNE---VYYKWEPFYKCLKN--GLHESKILITTRKE 324 (965)
Q Consensus 266 ---~~~~~~~l~~~l~~~l~---~kr~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~ilvTtR~~ 324 (965)
...+.+++...+...+. -++.+||+|..... +......+...+.. ...|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11144555555554442 23349999998531 22223334333332 12467888888765
No 253
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.69 E-value=0.0082 Score=59.60 Aligned_cols=112 Identities=13% Similarity=-0.040 Sum_probs=61.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHHHh
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSAS--NFGEFQSLMQHIQECV 281 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--~~~~~~~l~~~l~~~l 281 (965)
.-.++.|+|..|+||||++..+... ...+-..++.+.-.. +.+ ....|++.++.... ......++...+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~--d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKI--DTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECC--CGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEecc--Cch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 3468999999999999999887765 222222334443222 111 11233333332211 1223445555666555
Q ss_pred CCceE-EEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecc
Q 002115 282 EGKKF-LLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRK 323 (965)
Q Consensus 282 ~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 323 (965)
.+.++ +||+|.+..-..+..+.+ ..+.+ .|..||+|-+.
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLD 125 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCS
T ss_pred hCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEecc
Confidence 54445 999999965333333333 33333 26789999884
No 254
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.64 E-value=0.072 Score=50.72 Aligned_cols=19 Identities=37% Similarity=0.698 Sum_probs=18.4
Q ss_pred EEEEEecCCChHHHHHHHH
Q 002115 207 IISLVGMGGIGKTTLAQFA 225 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v 225 (965)
+|.|.|++|+||||+|+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 255
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.58 E-value=0.027 Score=60.25 Aligned_cols=85 Identities=21% Similarity=0.216 Sum_probs=55.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHHH
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSA-----SNFGEFQSLMQHIQ 278 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l~ 278 (965)
.-.++.|+|.+|+||||||.++.... ...=..++|++....++.. .++.++... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 45699999999999999999988752 2211346799887777654 344444321 11234556655555
Q ss_pred HHhC-CceEEEEEeCCCc
Q 002115 279 ECVE-GKKFLLVLDDLWN 295 (965)
Q Consensus 279 ~~l~-~kr~LlVlDdv~~ 295 (965)
..++ .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5443 4455889998743
No 256
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.55 E-value=0.046 Score=52.32 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 257
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.50 E-value=0.034 Score=59.85 Aligned_cols=83 Identities=18% Similarity=0.145 Sum_probs=54.4
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHHHH
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSA-----SNFGEFQSLMQHIQE 279 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l~~ 279 (965)
-.++.|.|.+|+||||||.++.... ...=..++|++....++... ++.++... ....+.+++...+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~~-----a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPVY-----ARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHHH-----HHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 4588999999999999998887652 22223688999987776542 34443321 112355666666666
Q ss_pred HhC-CceEEEEEeCCC
Q 002115 280 CVE-GKKFLLVLDDLW 294 (965)
Q Consensus 280 ~l~-~kr~LlVlDdv~ 294 (965)
..+ ...-+||+|.+.
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 654 344589999874
No 258
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.46 E-value=0.057 Score=57.94 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=40.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccc----cccceEEEEcCCCCCHHHHHHHHHHHhc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKR----NFEKRIWVCVSEPFDEFRIARAIIESLT 261 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 261 (965)
.-.++.|+|.+|+||||||..++....... .-..++|++....++...+.. +++.++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 456999999999999999998876522211 124678999988877776554 344443
No 259
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.37 E-value=0.034 Score=59.23 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=40.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccc---------cc-----cceEEEEcCCCCCHHHHHHHHHHHhc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKR---------NF-----EKRIWVCVSEPFDEFRIARAIIESLT 261 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~i~~~l~ 261 (965)
.-.++.|+|.+|+||||||.+++....... .. ..++|++....++...+... ++.++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g 167 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAG 167 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcC
Confidence 456999999999999999988875421111 11 36789999888877776643 44443
No 260
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.33 E-value=0.052 Score=56.23 Aligned_cols=82 Identities=13% Similarity=0.174 Sum_probs=53.8
Q ss_pred EEEEEecCCChHHHHHHHHHcccccccc--ccceEEEEcCCCCCHHHHHHHHHHHhcCCCC-----CCCCHHHH-HHHHH
Q 002115 207 IISLVGMGGIGKTTLAQFAYNNDGVKRN--FEKRIWVCVSEPFDEFRIARAIIESLTGSAS-----NFGEFQSL-MQHIQ 278 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l-~~~l~ 278 (965)
++-|.|.+|+||||||.+++.. .... =..++||+....++... ++.++.... ...+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~r-----a~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPAY-----LRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHHH-----HHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHHH-----HHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999887765 2222 13578999888887642 566654321 12344554 33333
Q ss_pred HH--h-CCceEEEEEeCCCc
Q 002115 279 EC--V-EGKKFLLVLDDLWN 295 (965)
Q Consensus 279 ~~--l-~~kr~LlVlDdv~~ 295 (965)
.. + .++.-+||+|-+..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 32 3 45678999999854
No 261
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.32 E-value=0.041 Score=59.01 Aligned_cols=85 Identities=18% Similarity=0.145 Sum_probs=53.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHH
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSAS-----NFGEFQSLMQHIQ 278 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~ 278 (965)
.-+++.|+|.+|+||||||.++.... ...=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34599999999999999999888652 2222357899988777653 2344442211 1234555555555
Q ss_pred HHhC-CceEEEEEeCCCc
Q 002115 279 ECVE-GKKFLLVLDDLWN 295 (965)
Q Consensus 279 ~~l~-~kr~LlVlDdv~~ 295 (965)
...+ .+.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 5443 3455899998743
No 262
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.29 E-value=0.058 Score=57.93 Aligned_cols=91 Identities=24% Similarity=0.243 Sum_probs=52.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccc---c-ceEEEEcCCCCCHHHHHHHHHHHhcCCC------------CCC
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNF---E-KRIWVCVSEPFDEFRIARAIIESLTGSA------------SNF 267 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------~~~ 267 (965)
.-.++.|+|..|+|||||+..++......... . .++|++....+....+ ..+.+..+... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45699999999999999999988652111111 2 3489887665544443 23444332110 001
Q ss_pred CCHHHHHHHHHHHhC------CceEEEEEeCCCc
Q 002115 268 GEFQSLMQHIQECVE------GKKFLLVLDDLWN 295 (965)
Q Consensus 268 ~~~~~l~~~l~~~l~------~kr~LlVlDdv~~ 295 (965)
....++...+...+. .+.=+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 112233444444443 4677999999854
No 263
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.25 E-value=0.024 Score=60.86 Aligned_cols=84 Identities=15% Similarity=0.126 Sum_probs=51.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHH
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSAS-----NFGEFQSLMQHIQ 278 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~ 278 (965)
.-+++.|.|.+|+||||||.++..... ..=..++|++....++... ++.++.... ...+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 345999999999999999988876522 2223688999988777542 344432211 1123445544444
Q ss_pred HHhC-CceEEEEEeCCC
Q 002115 279 ECVE-GKKFLLVLDDLW 294 (965)
Q Consensus 279 ~~l~-~kr~LlVlDdv~ 294 (965)
...+ .+.-+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 4332 344588888874
No 264
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.25 E-value=0.021 Score=56.13 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=34.5
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 182 GREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 182 Gr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.|++.++.+.+.+.... .....+|+|+|..|+||||+++.+...
T Consensus 2 ~~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CHHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35667788888887542 235679999999999999999998764
No 265
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.14 E-value=0.039 Score=58.74 Aligned_cols=56 Identities=21% Similarity=0.229 Sum_probs=39.4
Q ss_pred cEEEEEEecCCChHHHHHHHHHcccccccc----ccceEEEEcCCCCCHHHHHHHHHHHhc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRN----FEKRIWVCVSEPFDEFRIARAIIESLT 261 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~ 261 (965)
-.++.|+|.+|+||||||.+++........ -..++|++....++...+.. +++.++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g 166 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALG 166 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhC
Confidence 459999999999999999988765211111 23678999988877776654 345543
No 266
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.14 E-value=0.067 Score=51.35 Aligned_cols=117 Identities=20% Similarity=0.114 Sum_probs=61.9
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCC---CCCHHHHHHHHHHHhc--CCC--CCCC-------CHH
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSE---PFDEFRIARAIIESLT--GSA--SNFG-------EFQ 271 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~~~l~--~~~--~~~~-------~~~ 271 (965)
..|.|++-.|.||||+|--..-. .-++=-.+.++..-+ ......++..+.-.+. +.. .... ...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalR--A~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAAR--AVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHH--HHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 46777777779999999555543 111111233443322 2333334433310000 000 0011 112
Q ss_pred HHHHHHHHHhCCceE-EEEEeCCCc---chhhchHhHHhhhcCCCCCcEEEEeecch
Q 002115 272 SLMQHIQECVEGKKF-LLVLDDLWN---EVYYKWEPFYKCLKNGLHESKILITTRKE 324 (965)
Q Consensus 272 ~l~~~l~~~l~~kr~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 324 (965)
......++.+.+.+| |||||++-. -.....+.+...+........||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 233345555655555 999999832 12335567777777777778999999985
No 267
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.12 E-value=0.098 Score=54.39 Aligned_cols=81 Identities=16% Similarity=0.159 Sum_probs=45.4
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHccccccc-cccceEEEEcCCCCCHHHHHHHHHHHh------cC-CCCCCCCHHHHH
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNNDGVKR-NFEKRIWVCVSEPFDEFRIARAIIESL------TG-SASNFGEFQSLM 274 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~i~~~l------~~-~~~~~~~~~~l~ 274 (965)
....+|+|+|..|+||||||+.+.......+ .....+.|+...-+-.......+.... .. ..+...+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4678999999999999999998876522111 122344445544333334444443321 11 124455666666
Q ss_pred HHHHHHhCC
Q 002115 275 QHIQECVEG 283 (965)
Q Consensus 275 ~~l~~~l~~ 283 (965)
+.+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 666655444
No 268
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.08 E-value=0.029 Score=54.12 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=33.5
Q ss_pred hhcCCccceEEcCcc-cccccccchhhHHhhhhccCCCcEEEeCCccCcc-----ccchhhhccCCCcEEeccCcc
Q 002115 587 FDKLTCLRALTLGVH-SLRLCENCIKEVRTNIENLLHLKYLNLAHQREIE-----KLPETLCELYNLEHLDISYCR 656 (965)
Q Consensus 587 ~~~l~~Lr~L~L~~n-~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~-----~lp~~i~~L~~L~~LdL~~~~ 656 (965)
+.+-+.|+.|+|++| .+. ......+-+.+..-..|+.|+|++|. ++ .+.+.+..-+.|++|+|++|.
T Consensus 37 l~~n~~L~~L~L~~nn~ig--d~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVS--KERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HTTCSSCCEEECTTCCSSC--HHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HhcCCCccEEECCCCCCCC--HHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 344455566666543 443 33333444455555556666666655 33 233334444555566665555
No 269
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.95 E-value=0.07 Score=56.01 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|.+|+|||||+..+...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 49999999999999999998875
No 270
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.81 E-value=0.083 Score=55.54 Aligned_cols=101 Identities=14% Similarity=0.080 Sum_probs=54.7
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccc--cceEEEEcCCCCCHHHHHHHHH
Q 002115 180 IFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNF--EKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 180 ~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
++|.......+...+.... ....+.+|+|.|..|+||||+++.+..- ..... ..+..+....-+-....+....
T Consensus 69 ~~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~l--l~~~~~~~~v~~i~~D~f~~~~~~l~~~~ 144 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKAL--LSRWPDHPNVEVITTDGFLYSNAKLEKQG 144 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHHH--HTTSTTCCCEEEEEGGGGBCCHHHHHHTT
T ss_pred hhcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHHH--hcccCCCCeEEEEeecccccchhhhhhHH
Confidence 3555566666666666543 2346789999999999999999988754 21111 1234454433222122111100
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhCCc
Q 002115 258 ESLTGSASNFGEFQSLMQHIQECVEGK 284 (965)
Q Consensus 258 ~~l~~~~~~~~~~~~l~~~l~~~l~~k 284 (965)
..-....+...+.+.+.+.+.....++
T Consensus 145 ~~~~~g~P~~~D~~~l~~~L~~L~~g~ 171 (321)
T 3tqc_A 145 LMKRKGFPESYDMPSLLRVLNAIKSGQ 171 (321)
T ss_dssp CGGGTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred HHhhccCcccccHHHHHHHHHhhhccc
Confidence 000011234456677777776666555
No 271
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.77 E-value=0.21 Score=49.92 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||.+.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 272
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.74 E-value=0.11 Score=52.22 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999874
No 273
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.72 E-value=0.039 Score=53.21 Aligned_cols=117 Identities=12% Similarity=0.101 Sum_probs=79.6
Q ss_pred hhhcCceeEEEeccc-cccc-ccccchHHhhcCCccceEEcCcccccccccchhhHHhhhhccCCCcEEEeCCccCccc-
Q 002115 560 WDHVKRLRSLLVESY-EYSW-SSEVLPQLFDKLTCLRALTLGVHSLRLCENCIKEVRTNIENLLHLKYLNLAHQREIEK- 636 (965)
Q Consensus 560 ~~~~~~Lr~L~l~~~-~~~~-~~~~l~~~~~~l~~Lr~L~L~~n~l~~~~~~i~~lp~~i~~L~~Lr~L~L~~~~~i~~- 636 (965)
...-+.|+.|.+.++ .... -...+-+.+..-+.|+.|+|++|.+. ......+.+.+..-..|++|+|++|. |+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig--d~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~ 113 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS--DSEARGLIELIETSPSLRVLNVESNF-LTPE 113 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB--HHHHTTHHHHHHHCSSCCEEECCSSB-CCHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC--hHHHHHHHHHHhcCCccCeEecCCCc-CCHH
Confidence 335677899998764 3210 11124455778889999999988887 55556677778888899999999999 652
Q ss_pred ----cchhhhccCCCcEEeccCccc--cc-----ccCccccCCCCccEeecCCC
Q 002115 637 ----LPETLCELYNLEHLDISYCRN--LR-----ELPQGIGKLRKLMYLENDGT 679 (965)
Q Consensus 637 ----lp~~i~~L~~L~~LdL~~~~~--l~-----~lP~~i~~L~~L~~L~l~~~ 679 (965)
+-+.+..-..|++|+|++|.. +. .+-..+..=+.|+.|+++.+
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 334555667799999986531 22 12233444577888888765
No 274
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.71 E-value=0.074 Score=55.55 Aligned_cols=87 Identities=15% Similarity=0.088 Sum_probs=44.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSE-PFDEFRIARAIIESLTGSASNFGEFQSLMQHIQECVE 282 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 282 (965)
...+++|+|.+|+||||++..+......+.. ..+..+.... .....+.+....+..+.......+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 4569999999999999999988765221111 1344554432 1222333333333332221111233444444443 3
Q ss_pred CceEEEEEeCC
Q 002115 283 GKKFLLVLDDL 293 (965)
Q Consensus 283 ~kr~LlVlDdv 293 (965)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 34457888843
No 275
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.47 E-value=0.028 Score=55.49 Aligned_cols=39 Identities=28% Similarity=0.319 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 186 EKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 186 ~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-.++|.+.+... .....+|+|+|..|.|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455566665432 235579999999999999999998865
No 276
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.29 E-value=0.26 Score=51.96 Aligned_cols=53 Identities=11% Similarity=0.067 Sum_probs=38.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHh
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESL 260 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 260 (965)
.-.++.|.|.+|+||||+|..++...-.++ ..++|++.. .+...+...++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 335899999999999999988876532222 467787765 56777777776654
No 277
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.13 E-value=0.043 Score=57.21 Aligned_cols=42 Identities=24% Similarity=0.356 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 186 EKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 186 ~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..++++..++.... ......+|.|.|++|+||||+|+.+...
T Consensus 15 ~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 15 RLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34455555544322 2345679999999999999999999764
No 278
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.08 E-value=0.031 Score=54.25 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+++|+|+.|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999864
No 279
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.03 E-value=0.043 Score=61.74 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=36.1
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 179 EIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.++|+++.++.+...+... .-|.|+|.+|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 5789999999988887643 26889999999999999999986
No 280
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.98 E-value=0.024 Score=54.37 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+|.|+|++|+||||+|+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999875
No 281
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.83 E-value=0.043 Score=59.57 Aligned_cols=50 Identities=28% Similarity=0.319 Sum_probs=36.4
Q ss_pred ccccchHHHHHHHHHHhcC-------C--CCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 179 EIFGREEEKNELVNRLLCE-------S--SKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~-------~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.++|.+..++.+...+... . .........|.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3689999888888877310 0 001123457889999999999999999976
No 282
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.82 E-value=0.032 Score=53.59 Aligned_cols=22 Identities=36% Similarity=0.359 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYN 227 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~ 227 (965)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 283
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.76 E-value=0.1 Score=57.39 Aligned_cols=87 Identities=22% Similarity=0.295 Sum_probs=49.6
Q ss_pred EEEEEecCCChHHHHHHHHHccccccccc-cceEEEEcCCCC-CHHHHHHHHHHHhc--------CCCCCCCCHHH----
Q 002115 207 IISLVGMGGIGKTTLAQFAYNNDGVKRNF-EKRIWVCVSEPF-DEFRIARAIIESLT--------GSASNFGEFQS---- 272 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~-~~~~~~~~i~~~l~--------~~~~~~~~~~~---- 272 (965)
.++|+|..|+|||||++.+... ....+ +..+++.+++.. ...++..++.+.-. ....+......
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 6899999999999999999876 22222 455677776654 33344444433200 01111111111
Q ss_pred HHHHHHHHh---CCceEEEEEeCCCc
Q 002115 273 LMQHIQECV---EGKKFLLVLDDLWN 295 (965)
Q Consensus 273 l~~~l~~~l---~~kr~LlVlDdv~~ 295 (965)
..-.+.+++ ++++.||++||+..
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 011233333 58999999999943
No 284
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.74 E-value=0.03 Score=54.89 Aligned_cols=24 Identities=38% Similarity=0.337 Sum_probs=21.5
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..+|.|+|+.|+||||+|+.+...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999865
No 285
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.73 E-value=0.049 Score=55.67 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 185 EEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 185 ~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...++++..+..... ......+|.|+|++|+||||+|+.+...
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 13 HALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 344555555554433 3445679999999999999999999764
No 286
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.69 E-value=0.031 Score=53.18 Aligned_cols=22 Identities=27% Similarity=0.147 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+|.|.|+.|+||||+|+.+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999865
No 287
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.60 E-value=0.04 Score=53.99 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|+|+|+.|.||||+|+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999875
No 288
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.60 E-value=0.08 Score=56.30 Aligned_cols=99 Identities=13% Similarity=0.064 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccccc-ccccceEEEEcCCCCCHHHHHHHHHHHhcC---
Q 002115 187 KNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVK-RNFEKRIWVCVSEPFDEFRIARAIIESLTG--- 262 (965)
Q Consensus 187 ~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~--- 262 (965)
--++++.+..-. .-..++|+|..|+|||||++.+.+....+ ..++ ++++-+++.... ..++.+.+..
T Consensus 161 GiraID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~E---v~~~~~~~~~~vV 231 (422)
T 3ice_A 161 TARVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEE---VTEMQRLVKGEVV 231 (422)
T ss_dssp HHHHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHH---HHHHHTTCSSEEE
T ss_pred cceeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHH---HHHHHHHhCeEEE
Confidence 345566665432 33489999999999999999987752111 1222 345667654322 1223333311
Q ss_pred -CCCCCCCHHHH-----HHHHHHHh--CCceEEEEEeCCC
Q 002115 263 -SASNFGEFQSL-----MQHIQECV--EGKKFLLVLDDLW 294 (965)
Q Consensus 263 -~~~~~~~~~~l-----~~~l~~~l--~~kr~LlVlDdv~ 294 (965)
...+.....+. .-.+.+++ .++..||++||+.
T Consensus 232 ~atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslT 271 (422)
T 3ice_A 232 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 271 (422)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHH
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCch
Confidence 11111111111 11122233 5899999999984
No 289
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.59 E-value=0.3 Score=49.78 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+++|+|..|.|||||.+.++.-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999864
No 290
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.53 E-value=0.21 Score=54.43 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=36.8
Q ss_pred cEEEEEEecCCChHHHHHHHHHcccccc----ccccceEEEEcCCCCCHHHHHHHHHHHhc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVK----RNFEKRIWVCVSEPFDEFRIARAIIESLT 261 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 261 (965)
-.++.|+|.+|+|||||+..++-..... +.-..++|++....++...+. .+++.++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~g 237 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFG 237 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcC
Confidence 3599999999999999999765221111 122458899887766665543 3555554
No 291
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.53 E-value=0.18 Score=53.43 Aligned_cols=52 Identities=13% Similarity=0.069 Sum_probs=37.0
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLT 261 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 261 (965)
.++.|.|.+|+||||+|..++..... +=..++|++. ..+...+...++....
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 48999999999999999888866222 1134667665 4567777777766544
No 292
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.46 E-value=0.074 Score=56.22 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=33.2
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 181 FGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 181 vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
|+.+.-.+++++.+...-. .+....|.|+|++|+||||+++.++..
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4556667777777643221 234567899999999999999998875
No 293
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.42 E-value=0.049 Score=52.88 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|.|.|++|+||||+|+.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999764
No 294
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.31 E-value=0.52 Score=51.64 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
++.||.++|.+|+||||++..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999888754
No 295
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.30 E-value=0.042 Score=52.78 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
++++|+|+.|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999864
No 296
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.23 E-value=0.034 Score=52.97 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+|+|+|+.|+||||+++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 297
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.23 E-value=0.038 Score=53.32 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.2
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+.|.|+|+.|+||||+|+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 347889999999999999999865
No 298
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.21 E-value=0.014 Score=56.35 Aligned_cols=107 Identities=12% Similarity=-0.044 Sum_probs=50.1
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCC--CCCCCCHHHHHHHHHHHhCC
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGS--ASNFGEFQSLMQHIQECVEG 283 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~--~~~~~~~~~l~~~l~~~l~~ 283 (965)
.++.|+|..|+||||++..+......++ . .++++.... +.+.-...+...++.. .....+.. .+.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g-~-~v~~~~~~~--d~r~~~~~i~s~~g~~~~~~~~~~~~----~~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK-K-KVAVFKPKI--DSRYHSTMIVSHSGNGVEAHVIERPE----EMRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT-C-EEEEEEEC-------CCCEECC----CEECEEESSGG----GGGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEeecc--ccccCcccEEecCCCceeeEEECCHH----HHHHHhcC
Confidence 3788999999999999966554421111 1 122222111 0000000000000000 00001111 12223334
Q ss_pred ceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeecc
Q 002115 284 KKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTRK 323 (965)
Q Consensus 284 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 323 (965)
+.-+|++|.+..-+. .|......+.+. |..|++|.+.
T Consensus 76 ~~dvviIDE~Q~~~~-~~~~~l~~l~~~--~~~Vi~~Gl~ 112 (184)
T 2orw_A 76 DTRGVFIDEVQFFNP-SLFEVVKDLLDR--GIDVFCAGLD 112 (184)
T ss_dssp TEEEEEECCGGGSCT-THHHHHHHHHHT--TCEEEEEEES
T ss_pred CCCEEEEECcccCCH-HHHHHHHHHHHC--CCCEEEEeec
Confidence 567999999976432 355544444333 6789998874
No 299
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.18 E-value=0.055 Score=51.60 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|+|+|+.|+||||+++.+...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998764
No 300
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.06 E-value=0.05 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999875
No 301
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.05 E-value=0.11 Score=58.29 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+.|.|.+|.||||++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8999999999999999988875
No 302
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.01 E-value=0.046 Score=53.57 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|+|+|+.|+||||+++.+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3459999999999999999999864
No 303
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.99 E-value=0.092 Score=47.13 Aligned_cols=51 Identities=18% Similarity=0.280 Sum_probs=24.4
Q ss_pred EEEeCCccCcc--ccchhhhccCCCcEEeccCcccccccCcc-ccCCCCccEeecCCC
Q 002115 625 YLNLAHQREIE--KLPETLCELYNLEHLDISYCRNLRELPQG-IGKLRKLMYLENDGT 679 (965)
Q Consensus 625 ~L~L~~~~~i~--~lp~~i~~L~~L~~LdL~~~~~l~~lP~~-i~~L~~L~~L~l~~~ 679 (965)
+++.+++. ++ .+|..+. .+|++|+|++|. +..+|.+ +..+++|+.|+|.+|
T Consensus 12 ~v~Cs~~~-L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSC-CCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCC-CccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCC
Confidence 44444444 44 4443221 245555555555 4445443 344555555555555
No 304
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.99 E-value=0.044 Score=52.64 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.|.|+|+.|+|||||++.+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999998764
No 305
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.96 E-value=0.041 Score=53.99 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.5
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..+|.|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999865
No 306
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.95 E-value=0.27 Score=51.39 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...++.|+|.+|+||||++..++..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 5679999999999999999998865
No 307
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.92 E-value=0.049 Score=51.79 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=20.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHHc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~ 227 (965)
.-.+++|+|..|+|||||++..+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 345999999999999999997553
No 308
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.87 E-value=0.066 Score=52.74 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|+|+|..|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999864
No 309
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.83 E-value=0.047 Score=51.68 Aligned_cols=25 Identities=32% Similarity=0.262 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999864
No 310
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.81 E-value=0.064 Score=52.57 Aligned_cols=26 Identities=38% Similarity=0.492 Sum_probs=22.9
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
....+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35679999999999999999999763
No 311
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.79 E-value=0.064 Score=53.00 Aligned_cols=25 Identities=40% Similarity=0.478 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|+|+|..|+|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999864
No 312
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.79 E-value=0.3 Score=53.40 Aligned_cols=25 Identities=36% Similarity=0.279 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...++.|+|.+|+||||++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999988865
No 313
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.78 E-value=0.058 Score=52.23 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYN 227 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~ 227 (965)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 314
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.77 E-value=0.055 Score=53.41 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|+|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3458999999999999999999865
No 315
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.70 E-value=0.048 Score=52.35 Aligned_cols=24 Identities=38% Similarity=0.376 Sum_probs=21.3
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.++|.|+|++|+||||+|+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457889999999999999999865
No 316
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.66 E-value=0.063 Score=56.56 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=21.6
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+.+||+|.|-|||||||.|..+.--
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a 71 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA 71 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH
Confidence 36789999999999999999766543
No 317
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.64 E-value=0.06 Score=52.87 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 48999999999999999999864
No 318
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.58 E-value=0.064 Score=52.92 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.5
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+.+||.|.|++|+||||.|+.+...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999865
No 319
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.57 E-value=0.063 Score=52.20 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.3
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..+|.|.|++|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998764
No 320
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.54 E-value=0.051 Score=53.45 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|.|+|++|+||||+++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4468999999999999999999865
No 321
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.54 E-value=0.072 Score=52.27 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|.|.|+.|+||||+|+.+...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999864
No 322
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.54 E-value=0.057 Score=52.30 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+|.|.|++|+||||+|+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999864
No 323
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.52 E-value=0.064 Score=52.20 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=21.4
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..+|.|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 324
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.51 E-value=0.062 Score=51.77 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|.|+|+.|+||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3458999999999999999998754
No 325
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.48 E-value=0.079 Score=51.14 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|.|+|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999875
No 326
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.47 E-value=0.059 Score=54.99 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+|.|+|+.|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999865
No 327
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.44 E-value=0.063 Score=52.72 Aligned_cols=21 Identities=43% Similarity=0.485 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHHc
Q 002115 207 IISLVGMGGIGKTTLAQFAYN 227 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~ 227 (965)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 799999999999999999975
No 328
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.42 E-value=0.049 Score=52.61 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999865
No 329
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.41 E-value=0.06 Score=52.81 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999875
No 330
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.41 E-value=0.064 Score=52.75 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.4
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 348999999999999999999865
No 331
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.41 E-value=0.063 Score=50.46 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..+++.|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3569999999999999999999875
No 332
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.33 E-value=0.071 Score=54.41 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
....+|+|.|+.|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999998764
No 333
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.31 E-value=0.072 Score=54.66 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.5
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 334
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.24 E-value=0.056 Score=51.60 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+|.|+|++|+||||+|+.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999865
No 335
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.23 E-value=0.83 Score=50.29 Aligned_cols=43 Identities=28% Similarity=0.349 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCC---CCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 186 EKNELVNRLLCESSK---EQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 186 ~~~~i~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-.+++.+.|...... .....++|.++|.+|+||||++..+...
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345566655432110 1235789999999999999999888765
No 336
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.21 E-value=0.075 Score=52.25 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYN 227 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~ 227 (965)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 337
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.19 E-value=0.094 Score=50.81 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999764
No 338
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.15 E-value=1.3 Score=59.78 Aligned_cols=227 Identities=13% Similarity=0.082 Sum_probs=0.0
Q ss_pred EEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCC------------CCCCCCHHHHHH
Q 002115 208 ISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGS------------ASNFGEFQSLMQ 275 (965)
Q Consensus 208 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~------------~~~~~~~~~l~~ 275 (965)
|.++|++|.|||++|+.+... ..=-..+.++.+...+...+++.+-..+... .
T Consensus 1270 vLL~GPpGtGKT~la~~~l~~----~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~----------- 1334 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALRN----SSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD----------- 1334 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHS----CSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS-----------
T ss_pred EEEECCCCCCHHHHHHHHHhc----CCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCC-----------
Q ss_pred HHHHHhCCceEEEEEeCCCcchhh------chHhHHhhhcCCC------------CCcEEEEeecchH-------HHhhc
Q 002115 276 HIQECVEGKKFLLVLDDLWNEVYY------KWEPFYKCLKNGL------------HESKILITTRKEI-------VARCM 330 (965)
Q Consensus 276 ~l~~~l~~kr~LlVlDdv~~~~~~------~~~~l~~~l~~~~------------~gs~ilvTtR~~~-------v~~~~ 330 (965)
+|+.++.+||+.-...+ ..+.++..+..++ .+..+|-++.... -....
T Consensus 1335 -------gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rll 1407 (2695)
T 4akg_A 1335 -------IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFT 1407 (2695)
T ss_dssp -------SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHH
T ss_pred -------CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhh
Q ss_pred CCcceEeCCCCChHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHcCCChHhHHHHHHhhcCCCCHHHHHHHHhhhhhh
Q 002115 331 RSTNVIYVNVLSEIECWSVFEQLAFFGRSMEECEKLENMGRQIVRKCKGLPLAAKTIASLLQSRNTEKEWQNILESEIWE 410 (965)
Q Consensus 331 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~~~~~ 410 (965)
.....+.+...++++-..+|.....+--. ..+++..++..|+.. +.+.|..+...
T Consensus 1408 Rrf~vi~i~~P~~~~l~~I~~~il~~~l~--~~~~v~~~~~~lv~a-------------------ti~~y~~v~~~---- 1462 (2695)
T 4akg_A 1408 RHAAILYLGYPSGKSLSQIYEIYYKAIFK--LVPEFRSYTEPFARA-------------------SVHLYNECKAR---- 1462 (2695)
T ss_dssp TTEEEEECCCCTTTHHHHHHHHHHHHHTT--SSGGGGGGHHHHHHH-------------------HHHHHHHHHHH----
T ss_pred heeeEEEeCCCCHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHH-------------------HHHHHHHHHHH----
Q ss_pred hhhhhhhhhhHHHHhhcCCcHhHHHHHhHhccc-CCCceecHHHHHHHHHhCC---ccccCCCCcHHHHHHHHHHHHHhC
Q 002115 411 LEEVERGLLAPLLLSYNELPSKIKQCFTYCAIF-PKDYQIQKKELINLWMAQG---YLSKKGTKEMEDIGEEYFNILASR 486 (965)
Q Consensus 411 ~~~~~~~i~~~l~~sy~~L~~~lk~cfl~~~~f-p~~~~i~~~~li~~w~aeg---~i~~~~~~~~e~~~~~~l~~L~~~ 486 (965)
+.+.-+.-|.-=+.++-+.|.-+-.. |+...-+.+.++++|+-|. |-..--.....+...+.+.+.+..
T Consensus 1463 -------~~~~~k~HY~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~ 1535 (2695)
T 4akg_A 1463 -------YSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDK 1535 (2695)
T ss_dssp -------SCTTTCTTCCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHH
T ss_pred -------cCCccCCCcccCHHHHHHHHHHHHhcCchhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q ss_pred CC
Q 002115 487 SF 488 (965)
Q Consensus 487 sl 488 (965)
.|
T Consensus 1536 ~f 1537 (2695)
T 4akg_A 1536 YL 1537 (2695)
T ss_dssp HS
T ss_pred Hh
No 339
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.13 E-value=0.35 Score=53.32 Aligned_cols=101 Identities=23% Similarity=0.179 Sum_probs=61.1
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCC-CHHHHHHHHHHHhcCC----
Q 002115 189 ELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPF-DEFRIARAIIESLTGS---- 263 (965)
Q Consensus 189 ~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~---- 263 (965)
++++.|..- .+-..++|+|..|+|||+|++++.+.. .+.+-+.++++-+.+.. ...++.+++.+.=...
T Consensus 154 rvID~l~pi-----gkGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l 227 (498)
T 1fx0_B 154 KVVNLLAPY-----RRGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNI 227 (498)
T ss_dssp TTHHHHSCC-----CTTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTT
T ss_pred eEeeeeccc-----ccCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccc
Confidence 345666432 233478999999999999999998751 12345778888888765 4455666665431111
Q ss_pred ----------CCCCCC-----HHHHHHHHHHHhC---CceEEEEEeCCCc
Q 002115 264 ----------ASNFGE-----FQSLMQHIQECVE---GKKFLLVLDDLWN 295 (965)
Q Consensus 264 ----------~~~~~~-----~~~l~~~l~~~l~---~kr~LlVlDdv~~ 295 (965)
..+... .....-.+.++++ ++..||++||+..
T Consensus 228 ~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 228 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp CCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 011111 1122223445554 6899999999843
No 340
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.12 E-value=0.063 Score=57.93 Aligned_cols=45 Identities=24% Similarity=0.197 Sum_probs=33.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..++|.+..++.+...+.... ..-|.|+|.+|+|||++|+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 458999886666544443221 113889999999999999999875
No 341
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.10 E-value=0.12 Score=51.47 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998865
No 342
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.08 E-value=0.069 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999764
No 343
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.05 E-value=0.059 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
++++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999764
No 344
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.02 E-value=0.075 Score=54.01 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.4
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..+|+|+|+.|+|||||++.+...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 459999999999999999999843
No 345
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.99 E-value=0.088 Score=55.38 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|+|+|..|+|||||++.+..-
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 5679999999999999999998864
No 346
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=91.94 E-value=0.54 Score=51.55 Aligned_cols=65 Identities=28% Similarity=0.256 Sum_probs=43.7
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCC-CHHHHHHHHHHH
Q 002115 189 ELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPF-DEFRIARAIIES 259 (965)
Q Consensus 189 ~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~ 259 (965)
++++.|..-. +-..++|+|..|+|||+|++++.+.. .+.+-+.++++-+.+.. ...++.+++.+.
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4566665321 33479999999999999999998752 12334567788887654 345566666554
No 347
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.94 E-value=0.055 Score=52.11 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+|.|+|++|+||||+|+.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 348
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.93 E-value=0.086 Score=52.03 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.6
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999875
No 349
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.93 E-value=0.13 Score=51.99 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|.|.|++|+||||+|+.+...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999764
No 350
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.93 E-value=0.082 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+|.|.|++|+||||+|+.+...
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 351
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.92 E-value=0.086 Score=51.60 Aligned_cols=25 Identities=28% Similarity=0.224 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|.|+|++|+||||+|+.+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999764
No 352
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.91 E-value=0.078 Score=51.75 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+|+|.|++|+||||+|+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999864
No 353
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.80 E-value=0.083 Score=51.13 Aligned_cols=25 Identities=20% Similarity=0.519 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..++|+|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4468999999999999999999864
No 354
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.80 E-value=0.093 Score=50.79 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|+|+|+.|+||||+|+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 5679999999999999999998753
No 355
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.78 E-value=0.13 Score=46.10 Aligned_cols=43 Identities=19% Similarity=0.154 Sum_probs=33.0
Q ss_pred hHHhhhhccCCCcEEEeCCccCccccch-hhhccCCCcEEeccCccc
Q 002115 612 EVRTNIENLLHLKYLNLAHQREIEKLPE-TLCELYNLEHLDISYCRN 657 (965)
Q Consensus 612 ~lp~~i~~L~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~LdL~~~~~ 657 (965)
.+|..+. .+|++|+|++|. ++.+|. .|..+++|++|+|++|..
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 5664322 368999999998 888876 577889999999999873
No 356
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.77 E-value=0.11 Score=48.50 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.-.+++|+|..|.|||||++.+..-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3459999999999999999999874
No 357
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.72 E-value=0.42 Score=52.97 Aligned_cols=43 Identities=28% Similarity=0.482 Sum_probs=30.2
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCC
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFD 248 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 248 (965)
....+++|+|..|+|||||++.+... .+ .....+++.-...+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl--l~-~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ--FE-QQGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH--HH-HTTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH--hh-hcCCeEEEecCcccc
Confidence 34679999999999999999999865 22 123456655444444
No 358
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.69 E-value=0.065 Score=50.93 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+|.|.|+.|+||||+|+.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 359
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.69 E-value=0.099 Score=50.04 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|.|+|+.|+||||+++.+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999764
No 360
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.67 E-value=0.24 Score=49.51 Aligned_cols=46 Identities=24% Similarity=0.232 Sum_probs=31.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcccccc---c-cccceEEEEcCCCCCH
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVK---R-NFEKRIWVCVSEPFDE 249 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~ 249 (965)
.-.+++|+|..|+|||||++.++...... . .-...+|+.-...+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 34699999999999999999997631111 1 1234778776554443
No 361
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.66 E-value=0.46 Score=53.97 Aligned_cols=55 Identities=16% Similarity=0.042 Sum_probs=37.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLT 261 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 261 (965)
.-.++.|.|.+|+||||+|.+++.+...+ +=..++|++... +...+...++....
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLHN 295 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHHT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHHc
Confidence 34589999999999999998888662221 112567877654 56677777665543
No 362
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.63 E-value=0.34 Score=55.73 Aligned_cols=103 Identities=15% Similarity=0.107 Sum_probs=53.4
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH-HHhC--
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSASNFGEFQSLMQHIQ-ECVE-- 282 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~-~~l~-- 282 (965)
+++.|.|.+|.||||++..+..... .. ...+.+...... ....+.+.++.. ...+..+..... ....
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~--~~-g~~Vl~~ApT~~----Aa~~L~e~~~~~---a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAE--SL-GLEVGLCAPTGK----AARRLGEVTGRT---ASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH--HT-TCCEEEEESSHH----HHHHHHHHHTSC---EEEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH--hc-CCeEEEecCcHH----HHHHhHhhhccc---HHHHHHHHcCCcchhhhhh
Confidence 4899999999999999998886522 11 134444443322 222232222211 111111110000 0000
Q ss_pred ---CceEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEee
Q 002115 283 ---GKKFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITT 321 (965)
Q Consensus 283 ---~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt 321 (965)
.+-=+||+|.+...+...+..+...++ .+.++|+.-
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvG 313 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVG 313 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEE
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEe
Confidence 022389999997765555666666554 456777754
No 363
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.62 E-value=0.086 Score=49.80 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 364
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.60 E-value=0.094 Score=54.92 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+++|+|.+|+||||+++.+..-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4569999999999999999999864
No 365
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.57 E-value=0.11 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|+|+|..|+|||||++.+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4469999999999999999998764
No 366
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.53 E-value=0.15 Score=50.63 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=29.8
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 182 GREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 182 Gr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+.++..+.+...+.. ....+|.|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 334455555555422 25679999999999999999998865
No 367
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.52 E-value=0.06 Score=51.73 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=17.3
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..+|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999764
No 368
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.51 E-value=0.093 Score=51.65 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|+|||||++.+..-
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 49999999999999999999864
No 369
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.46 E-value=0.22 Score=52.43 Aligned_cols=41 Identities=27% Similarity=0.423 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 186 EKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 186 ~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+.....+.++.... .....+|+|+|..|+|||||++.+..-
T Consensus 63 ~~~~~~~~~l~~~~--~~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 63 RRQAVLEQFLGTNG--QRIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp HHHHHHHHHHTCC---CCCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34444444443211 234579999999999999999998864
No 370
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.43 E-value=0.1 Score=51.65 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.7
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..+|.|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999875
No 371
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.41 E-value=0.17 Score=55.67 Aligned_cols=51 Identities=24% Similarity=0.340 Sum_probs=36.4
Q ss_pred CccccchHHHHHHHHHHhcC--------CCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 178 SEIFGREEEKNELVNRLLCE--------SSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..++|.++.++.+...+... ........+-|.++|++|+||||+|+.+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 45789888888887666321 0001113456889999999999999999876
No 372
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.39 E-value=0.37 Score=53.87 Aligned_cols=51 Identities=16% Similarity=0.129 Sum_probs=34.8
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHH
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIE 258 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 258 (965)
-.++.|.|.+|+||||||..++...... .=..++|++... +...+...++.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~~ 253 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRMLC 253 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHHH
Confidence 3499999999999999999988762211 112577776543 45666666543
No 373
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.34 E-value=0.095 Score=50.86 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+|+|.|..|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 374
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.33 E-value=1 Score=49.23 Aligned_cols=25 Identities=48% Similarity=0.429 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|.++|.+|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999888865
No 375
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.32 E-value=0.83 Score=48.55 Aligned_cols=55 Identities=18% Similarity=0.056 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcccccc-ccccceEEEEcCCC
Q 002115 186 EKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVK-RNFEKRIWVCVSEP 246 (965)
Q Consensus 186 ~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~ 246 (965)
---++++.+..-. .-..++|+|.+|+|||+|++++.+....+ ..+. ++++-+++.
T Consensus 161 tGiraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 161 YSTRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred ccchhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 3446777775422 33478999999999999999988752211 1222 346666653
No 376
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.31 E-value=0.1 Score=51.51 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.7
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..+|+|.|..|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999875
No 377
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.28 E-value=0.5 Score=49.91 Aligned_cols=25 Identities=40% Similarity=0.488 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+++|+|..|+||||+++.+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999998865
No 378
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.24 E-value=0.13 Score=53.36 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHH
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAY 226 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~ 226 (965)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999999997
No 379
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.16 E-value=0.09 Score=52.24 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.3
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-.+++|+|+.|+|||||++.+...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 348999999999999999999864
No 380
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.15 E-value=0.1 Score=51.93 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.2
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...|.|.|++|+||||+|+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999864
No 381
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.12 E-value=0.1 Score=52.19 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=21.4
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...|.|.|++|+||||+|+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999864
No 382
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.11 E-value=0.11 Score=53.09 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.5
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..+|+|+|+.|+||||+++.+...
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 349999999999999999999854
No 383
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.05 E-value=0.08 Score=50.12 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
++++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998865
No 384
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.04 E-value=0.18 Score=48.64 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
....|.|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4557899999999999999999875
No 385
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.00 E-value=0.22 Score=53.56 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 186 EKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 186 ~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
....+.+.+... .....+|+|+|.+|+|||||+..+...
T Consensus 64 ~~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 64 QAQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 345555555432 236789999999999999999888754
No 386
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.99 E-value=0.96 Score=45.26 Aligned_cols=88 Identities=16% Similarity=0.199 Sum_probs=45.1
Q ss_pred EEEEEecCCChHHHHHHHHHccc-cccccc-cceEEEEcCCCCCHHHHHHHHHHHhcCCCC---------------CC--
Q 002115 207 IISLVGMGGIGKTTLAQFAYNND-GVKRNF-EKRIWVCVSEPFDEFRIARAIIESLTGSAS---------------NF-- 267 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~~-~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------------~~-- 267 (965)
.+.|+|..|.||||+.....-+. ...+.. ...+.+..........+.+.+...++.... ..
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 157 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHAS 157 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSSE
T ss_pred EEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCCe
Confidence 88999999999998765554321 111222 223333333222223334444443332100 00
Q ss_pred ---CCHHHHHHHHHHHhCCceEEEEEeCCCc
Q 002115 268 ---GEFQSLMQHIQECVEGKKFLLVLDDLWN 295 (965)
Q Consensus 268 ---~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 295 (965)
...+.+.+.+...+.+- -+||+|.+..
T Consensus 158 Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~ 187 (235)
T 3llm_A 158 IMFCTVGVLLRKLEAGIRGI-SHVIVDEIHE 187 (235)
T ss_dssp EEEEEHHHHHHHHHHCCTTC-CEEEECCTTS
T ss_pred EEEECHHHHHHHHHhhhcCC-cEEEEECCcc
Confidence 12356666666544433 3789999975
No 387
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.97 E-value=0.13 Score=50.83 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|.|.|+.|+||||+|+.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998765
No 388
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.88 E-value=0.12 Score=51.25 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.-.+++|+|+.|+|||||.+.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3459999999999999999999865
No 389
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.86 E-value=0.069 Score=52.84 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+|+|.|..|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999998765
No 390
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.82 E-value=1.1 Score=50.13 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=21.5
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...++|.|+|.+|+||||++..+...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999888854
No 391
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.82 E-value=0.1 Score=50.36 Aligned_cols=22 Identities=41% Similarity=0.448 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+++|+|..|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 7899999999999999998875
No 392
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.79 E-value=0.11 Score=51.87 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.3
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999865
No 393
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.79 E-value=0.26 Score=47.83 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.|+|.|..|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999865
No 394
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.69 E-value=0.17 Score=50.88 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=25.4
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEE
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWV 241 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 241 (965)
.+++|+|..|+|||||.+.+..- .......+++
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl---~~p~~G~I~~ 64 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL---DKPTEGEVYI 64 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhcC---CCCCceEEEE
Confidence 48999999999999999999864 2233455554
No 395
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.68 E-value=0.14 Score=53.55 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+++|+|..|+||||+++.++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4569999999999999999998875
No 396
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.66 E-value=0.11 Score=51.40 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 397
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.65 E-value=0.14 Score=50.71 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.7
Q ss_pred cEEEEEEecCCChHHHHHHHHHc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYN 227 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~ 227 (965)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 398
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.65 E-value=0.78 Score=51.02 Aligned_cols=54 Identities=13% Similarity=0.052 Sum_probs=37.2
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLT 261 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 261 (965)
-.++.|.|.+|+||||+|..++...... .=..++|++.. .+...+...++....
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSEA 253 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHHT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHHc
Confidence 3589999999999999998888652211 11357777665 456677777665443
No 399
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.63 E-value=0.13 Score=50.32 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+|+|.|+.|+||||+++.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 48999999999999999999875
No 400
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.61 E-value=1.1 Score=49.66 Aligned_cols=52 Identities=12% Similarity=0.074 Sum_probs=35.0
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHh
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESL 260 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 260 (965)
-.++.|.|.+|+||||+|..++.+.-.++ ..++|++.. .+...+...++...
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlE--ms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 248 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSS--SCTTHHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECC--CCHHHHHHHHHHHH
Confidence 35899999999999999988887632221 246676654 34555666655443
No 401
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.60 E-value=0.58 Score=48.69 Aligned_cols=24 Identities=46% Similarity=0.516 Sum_probs=21.6
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..++.++|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999888865
No 402
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.59 E-value=0.23 Score=54.16 Aligned_cols=86 Identities=12% Similarity=0.150 Sum_probs=51.4
Q ss_pred EEEEEecCCChHHHHHHHHHcccccccccc----ceEEEEcCCCC-CHHHHHHHHHHHh--cC-----CCCCCCCHHH--
Q 002115 207 IISLVGMGGIGKTTLAQFAYNNDGVKRNFE----KRIWVCVSEPF-DEFRIARAIIESL--TG-----SASNFGEFQS-- 272 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~-~~~~~~~~i~~~l--~~-----~~~~~~~~~~-- 272 (965)
.++|.|..|+|||+|+.++.+.... +-+ .++++-+.+.. ...++.+++.+.= .. ...+.....+
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 5789999999999999999987332 223 56677777543 4455556554431 10 0111111111
Q ss_pred ---HHHHHHHHh---CCceEEEEEeCCC
Q 002115 273 ---LMQHIQECV---EGKKFLLVLDDLW 294 (965)
Q Consensus 273 ---l~~~l~~~l---~~kr~LlVlDdv~ 294 (965)
..-.+.+++ .++..||++||+-
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 112244444 3799999999984
No 403
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.39 E-value=0.12 Score=51.12 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
No 404
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.37 E-value=0.1 Score=52.83 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+|+|+|+.|+||||+++.+...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 38999999999999999999864
No 405
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.33 E-value=0.18 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|+|||||++.+..-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 38999999999999999999863
No 406
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.27 E-value=0.14 Score=51.61 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=21.3
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||.+.+..-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 69999999999999999999874
No 407
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.16 E-value=0.2 Score=49.06 Aligned_cols=22 Identities=36% Similarity=0.313 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+++|+|..|.|||||++.+..-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999998863
No 408
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.12 E-value=0.15 Score=50.87 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||.+.+..-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999864
No 409
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.08 E-value=0.15 Score=48.42 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..+++.|+|..|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998865
No 410
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.06 E-value=0.2 Score=51.24 Aligned_cols=33 Identities=30% Similarity=0.376 Sum_probs=25.2
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEE
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWV 241 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 241 (965)
.+++|+|..|.|||||.+.+..- .......+++
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl---~~p~~G~i~~ 65 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL---EKPSEGAIIV 65 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcC---CCCCCcEEEE
Confidence 49999999999999999999864 2233455554
No 411
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.99 E-value=0.15 Score=51.80 Aligned_cols=23 Identities=35% Similarity=0.325 Sum_probs=20.5
Q ss_pred cEEEEEEecCCChHHHHHHHHHc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYN 227 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~ 227 (965)
-.+++|+|..|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 34999999999999999998874
No 412
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.95 E-value=0.13 Score=50.96 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999865
No 413
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.81 E-value=0.23 Score=50.90 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=25.4
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEE
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWV 241 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 241 (965)
.+++|+|..|.|||||++.+..- .......+++
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl---~~p~~G~I~~ 70 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY---LSPSHGECHL 70 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS---SCCSSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhcC---CCCCCcEEEE
Confidence 48999999999999999999874 2233455554
No 414
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.76 E-value=0.21 Score=51.06 Aligned_cols=26 Identities=35% Similarity=0.367 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
....++.+.|.||+||||++..+...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 35678999999999999999998754
No 415
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.71 E-value=0.19 Score=53.79 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+++|+|..|+||||+++.++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4579999999999999999998875
No 416
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.71 E-value=0.11 Score=52.23 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=15.9
Q ss_pred EEEEEEecCCChHHHHHHHHH-cc
Q 002115 206 CIISLVGMGGIGKTTLAQFAY-NN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~-~~ 228 (965)
.+++|+|+.|+|||||++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 589999999999999999998 53
No 417
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.66 E-value=0.16 Score=49.81 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.5
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+|+|.|..|+||||+|+.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999764
No 418
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.59 E-value=0.23 Score=50.71 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||.+.+..-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 49999999999999999999864
No 419
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.55 E-value=0.17 Score=53.26 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+|+|.|+.|+||||||+.+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999999865
No 420
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.55 E-value=0.21 Score=52.38 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..++|.|+|+.|+||||||..+...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4469999999999999999999875
No 421
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.54 E-value=0.17 Score=50.41 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=21.4
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..+|+|.|++|+||||+|+.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999864
No 422
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.49 E-value=0.24 Score=50.16 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||.+.+..-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999874
No 423
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.44 E-value=0.18 Score=49.82 Aligned_cols=22 Identities=41% Similarity=0.428 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999864
No 424
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.44 E-value=0.19 Score=48.62 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.4
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999875
No 425
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.42 E-value=0.29 Score=49.43 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.-.+++|+|..|.|||||.+.+..-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3459999999999999999999864
No 426
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.39 E-value=0.24 Score=50.32 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||.+.++.-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 49999999999999999999874
No 427
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.37 E-value=0.23 Score=57.78 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=36.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 178 SEIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 178 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..++|.+..++.+...+... ..+.|+|.+|+||||||+.+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899998888887777532 37899999999999999999875
No 428
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.33 E-value=0.17 Score=49.48 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+|.|.|++|+||||.|+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999865
No 429
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.30 E-value=0.54 Score=61.04 Aligned_cols=84 Identities=15% Similarity=0.106 Sum_probs=55.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHHH
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSA-----SNFGEFQSLMQHIQ 278 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l~ 278 (965)
..++|.|+|++|+|||+||.++...... +=..++|+++...++... ++.++... ......+++...++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~--~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 4569999999999999999988775322 223577888888777666 34443211 01123345555555
Q ss_pred HHhC-CceEEEEEeCCC
Q 002115 279 ECVE-GKKFLLVLDDLW 294 (965)
Q Consensus 279 ~~l~-~kr~LlVlDdv~ 294 (965)
+..+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5543 566799999984
No 430
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.27 E-value=0.22 Score=46.69 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 431
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.24 E-value=0.25 Score=50.77 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||++.++.-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999874
No 432
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.20 E-value=0.18 Score=50.19 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999764
No 433
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.15 E-value=0.22 Score=52.54 Aligned_cols=25 Identities=40% Similarity=0.375 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...++.|+|.+|+||||++..+...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999988865
No 434
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.08 E-value=0.19 Score=55.40 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.9
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35679999999999999999999865
No 435
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.02 E-value=0.2 Score=50.24 Aligned_cols=24 Identities=33% Similarity=0.253 Sum_probs=21.3
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...|.|.|+.|+||||+|+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999865
No 436
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.00 E-value=0.19 Score=50.67 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||.+.++.-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 437
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.96 E-value=0.16 Score=49.99 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999874
No 438
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.93 E-value=0.18 Score=48.33 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 439
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.89 E-value=0.2 Score=52.48 Aligned_cols=24 Identities=38% Similarity=0.379 Sum_probs=21.6
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..+|.|+|+.|+||||||+.+...
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999865
No 440
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.87 E-value=0.21 Score=50.73 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||.+.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999873
No 441
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.87 E-value=0.27 Score=50.34 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999864
No 442
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.84 E-value=0.24 Score=51.34 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.5
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.++|.|+|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 458999999999999999999865
No 443
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.83 E-value=0.2 Score=51.17 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||.+.+..-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 444
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.80 E-value=0.23 Score=49.74 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
....+|+|.|..|+||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34579999999999999999998764
No 445
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.77 E-value=0.29 Score=49.44 Aligned_cols=39 Identities=31% Similarity=0.323 Sum_probs=27.7
Q ss_pred cEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCC
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSE 245 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 245 (965)
-.++.|.|.+|+||||||.+++... ...=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 3489999999999999998776542 11223577777654
No 446
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.77 E-value=0.24 Score=45.94 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998865
No 447
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.75 E-value=0.42 Score=47.69 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
....|.|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999876
No 448
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.74 E-value=0.78 Score=54.42 Aligned_cols=100 Identities=19% Similarity=0.206 Sum_probs=57.8
Q ss_pred CCCccccchHHHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCC
Q 002115 176 DESEIFGREEEKNELVNRLLCESS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFD 248 (965)
Q Consensus 176 ~~~~~vGr~~~~~~i~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 248 (965)
.-..+.|.++.++++.+.+.-+-. .+-...+-|.++|++|.|||.+|+++++. .... ++.++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~v~~--- 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIKG--- 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCE-----EEECCH---
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCc-----eEEecc---
Confidence 344677888888887776543211 01233456789999999999999999987 3322 333321
Q ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCc
Q 002115 249 EFRIARAIIESLTGSASNFGEFQSLMQHIQECVEGKKFLLVLDDLWN 295 (965)
Q Consensus 249 ~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 295 (965)
.+++....+ .....+...+...-+..+.+|++|+++.
T Consensus 545 -----~~l~s~~vG-----ese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 545 -----PELLTMWFG-----ESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp -----HHHHTTTCS-----SCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred -----chhhccccc-----hHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 122222111 1122233333333346789999999854
No 449
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.72 E-value=0.21 Score=51.17 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||.+.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 450
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.70 E-value=0.22 Score=52.28 Aligned_cols=22 Identities=36% Similarity=0.359 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYN 227 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~ 227 (965)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 451
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.60 E-value=0.24 Score=52.08 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=27.1
Q ss_pred CCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcC
Q 002115 202 QKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVS 244 (965)
Q Consensus 202 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 244 (965)
....++|+|+|-||+||||+|..+... ....=..++-|+..
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D 78 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCD 78 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEES
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCC
Confidence 346789999999999999999877764 21111135555554
No 452
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.52 E-value=0.23 Score=49.99 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 203 KGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
....+|+|+|+.|+||||+++.+...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999864
No 453
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=88.36 E-value=0.73 Score=50.86 Aligned_cols=86 Identities=20% Similarity=0.150 Sum_probs=50.4
Q ss_pred EEEEEEecCCChHHHHH-HHHHcccccccccc-ceEEEEcCCCC-CHHHHHHHHHHHhcC-------CCCCCCCHHHH--
Q 002115 206 CIISLVGMGGIGKTTLA-QFAYNNDGVKRNFE-KRIWVCVSEPF-DEFRIARAIIESLTG-------SASNFGEFQSL-- 273 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~l-- 273 (965)
..++|+|..|+|||+|| ..+.+.. .-+ .++++-+++.. .+.++.+.+.+.=.. ...+.....+.
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 47899999999999995 5777752 244 34677777654 344555555442111 01111111111
Q ss_pred ---HHHHHHHh--CCceEEEEEeCCCc
Q 002115 274 ---MQHIQECV--EGKKFLLVLDDLWN 295 (965)
Q Consensus 274 ---~~~l~~~l--~~kr~LlVlDdv~~ 295 (965)
.-.+.+++ +++..||++||+..
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 11233344 58999999999843
No 454
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.34 E-value=0.29 Score=50.62 Aligned_cols=25 Identities=36% Similarity=0.224 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..++|.|+|+.|+||||||..+...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 4578999999999999999999865
No 455
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=88.32 E-value=1 Score=50.10 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=40.5
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCH-HHHHHHH
Q 002115 189 ELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDE-FRIARAI 256 (965)
Q Consensus 189 ~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i 256 (965)
++++.|..-. +-..++|.|..|+|||+|++++.+. .+-+.++++-+++.... .++.+++
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 4566665321 3347899999999999999998764 23356888888876644 3444443
No 456
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.32 E-value=0.22 Score=50.34 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||.+.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 38999999999999999999875
No 457
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.30 E-value=0.22 Score=50.81 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||.+.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999999874
No 458
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.23 E-value=0.24 Score=48.24 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.2
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999999875
No 459
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.15 E-value=0.66 Score=44.97 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=29.3
Q ss_pred EEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHH
Q 002115 208 ISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAII 257 (965)
Q Consensus 208 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 257 (965)
|+|=|..|+||||.++.+++. .+..-..+++..-.......+..+.++
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 677899999999999999876 333332344443333333334444443
No 460
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.12 E-value=0.23 Score=50.39 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999874
No 461
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.08 E-value=0.28 Score=51.07 Aligned_cols=25 Identities=36% Similarity=0.279 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+++|+|.+|+||||++..++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999998875
No 462
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.04 E-value=0.23 Score=51.16 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|..|.|||||.+.++.-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 38999999999999999999874
No 463
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.03 E-value=2.1 Score=49.33 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.3
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-.+++|+|..|.|||||++.+..-
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999863
No 464
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=88.02 E-value=1.3 Score=48.24 Aligned_cols=105 Identities=12% Similarity=0.015 Sum_probs=55.2
Q ss_pred CCCcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCC---CCCCCCHHHHHHHHH
Q 002115 202 QKGPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGS---ASNFGEFQSLMQHIQ 278 (965)
Q Consensus 202 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~---~~~~~~~~~l~~~l~ 278 (965)
....++..|.|.+|.||||+.++.++. ...+.++-. .....++.+.+... .............+.
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~~-------~~~lVlTpT-----~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~ 225 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVNF-------EEDLILVPG-----RQAAEMIRRRANASGIIVATKDNVRTVDSFLM 225 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCCT-------TTCEEEESC-----HHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHH
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhcc-------CCeEEEeCC-----HHHHHHHHHHhhhcCccccccceEEEeHHhhc
Confidence 457789999999999999999998752 112232221 23345555555421 111122222222332
Q ss_pred HHhCCc---eEEEEEeCCCcchhhchHhHHhhhcCCCCCcEEEEeec
Q 002115 279 ECVEGK---KFLLVLDDLWNEVYYKWEPFYKCLKNGLHESKILITTR 322 (965)
Q Consensus 279 ~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR 322 (965)
+....+ -=+||+|++.-.+...+..+....+. .++|+.--
T Consensus 226 ~~~~~~~~~~d~liiDE~sm~~~~~l~~l~~~~~~----~~vilvGD 268 (446)
T 3vkw_A 226 NYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLC----DIAYVYGD 268 (446)
T ss_dssp TTTSSCCCCCSEEEEETGGGSCHHHHHHHHHHTTC----SEEEEEEC
T ss_pred CCCCCCCCcCCEEEEeCcccCCHHHHHHHHHhCCC----CEEEEecC
Confidence 221111 23899999965433334444333221 56766653
No 465
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.99 E-value=0.29 Score=49.94 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.-.+++|+|..|+|||||++.+..-
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 3459999999999999999998864
No 466
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.98 E-value=0.26 Score=45.92 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999865
No 467
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.96 E-value=0.3 Score=46.86 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999874
No 468
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.95 E-value=0.26 Score=50.63 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.++|+|..|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
No 469
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=87.93 E-value=0.73 Score=50.83 Aligned_cols=98 Identities=17% Similarity=0.150 Sum_probs=55.4
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHH-HHHHcccccccccc-ceEEEEcCCCC-CHHHHHHHHHHHhcCC--
Q 002115 189 ELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLA-QFAYNNDGVKRNFE-KRIWVCVSEPF-DEFRIARAIIESLTGS-- 263 (965)
Q Consensus 189 ~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~-- 263 (965)
++++.|..-. .-..++|+|..|+|||+|| ..+.+.. +-+ .++++-+++.. ...++.+.+.+.=...
T Consensus 151 raID~l~Pig-----rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPIG-----RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCCB-----TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eecccccccc-----cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 3455554321 3347899999999999995 5777752 234 34677777654 3445555554421111
Q ss_pred -----CCCCCCHHHH-----HHHHHHHh--CCceEEEEEeCCCc
Q 002115 264 -----ASNFGEFQSL-----MQHIQECV--EGKKFLLVLDDLWN 295 (965)
Q Consensus 264 -----~~~~~~~~~l-----~~~l~~~l--~~kr~LlVlDdv~~ 295 (965)
..+.....+. .-.+.+++ .++..||++||+..
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 1111111111 11233334 58999999999843
No 470
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.89 E-value=0.36 Score=45.72 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+...|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999999999864
No 471
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.82 E-value=0.32 Score=53.63 Aligned_cols=25 Identities=40% Similarity=0.403 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+|.|+|.+|+||||++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888765
No 472
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.80 E-value=0.14 Score=53.36 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=18.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+..+|+|.|..|+||||+|+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4458999999999999999998764
No 473
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=87.75 E-value=0.43 Score=52.04 Aligned_cols=89 Identities=9% Similarity=0.146 Sum_probs=51.3
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccc--------cccc-ceEEEEcCCCC-CHHHHHHHHHHH--hcC-----CCCCCC
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVK--------RNFE-KRIWVCVSEPF-DEFRIARAIIES--LTG-----SASNFG 268 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~~~~~i~~~--l~~-----~~~~~~ 268 (965)
..++|.|..|+|||+|+.++.+..... ++=+ .++++-+.+.. ...++.+++.+. +.. ...+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 367899999999999999998874331 1111 56677777543 344555554432 100 011122
Q ss_pred CHHHH-----HHHHHHHh---CCceEEEEEeCCC
Q 002115 269 EFQSL-----MQHIQECV---EGKKFLLVLDDLW 294 (965)
Q Consensus 269 ~~~~l-----~~~l~~~l---~~kr~LlVlDdv~ 294 (965)
...+. .-.+.+++ .++..||++||+-
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 22221 12234444 3799999999984
No 474
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.74 E-value=0.27 Score=51.19 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.-.+++|+|..|.|||||++.+..-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3359999999999999999999864
No 475
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.74 E-value=0.44 Score=51.31 Aligned_cols=25 Identities=28% Similarity=0.072 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...+++|+|+.|.|||||++.+...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4459999999999999999999864
No 476
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.70 E-value=0.84 Score=59.35 Aligned_cols=85 Identities=15% Similarity=0.123 Sum_probs=57.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHH
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSAS-----NFGEFQSLMQHIQ 278 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~ 278 (965)
.-+++.|+|.+|+||||||.+++.... ..=..++|++....++... ++.++.... ...+.+++...++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 445999999999999999999887632 2223688999888777542 445543211 2345666666666
Q ss_pred HHhC-CceEEEEEeCCCc
Q 002115 279 ECVE-GKKFLLVLDDLWN 295 (965)
Q Consensus 279 ~~l~-~kr~LlVlDdv~~ 295 (965)
...+ .+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 5442 4556999999853
No 477
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.58 E-value=0.36 Score=46.59 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
....|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557899999999999999999865
No 478
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.51 E-value=0.29 Score=50.66 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.++.|+|.+|+|||||+..+...
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 49999999999999999988754
No 479
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.51 E-value=0.3 Score=46.79 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
+.|.|.|..|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999865
No 480
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.50 E-value=0.33 Score=48.95 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.5
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...|.|.|..|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999875
No 481
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.45 E-value=0.29 Score=46.19 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.1
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.-.|.|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999998865
No 482
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=87.41 E-value=1.4 Score=51.18 Aligned_cols=41 Identities=22% Similarity=0.094 Sum_probs=26.5
Q ss_pred EEEEEEecCCChHHHHHHHHHcccc-ccccccceEEEEcCCC
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDG-VKRNFEKRIWVCVSEP 246 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~ 246 (965)
+++.|.|.+|.||||++..+...-. ....-...+.+.+...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg 206 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTG 206 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCCh
Confidence 4899999999999999887765411 1001123566666543
No 483
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.39 E-value=0.32 Score=45.42 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.9
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.-.|.|+|.+|+|||||+..+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446889999999999999999865
No 484
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=87.37 E-value=1.4 Score=47.75 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=33.7
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHHcc
Q 002115 179 EIFGREEEKNELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 179 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.++|....++++.+.+..-.. .... |.|.|..|+|||++|+.+...
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~~-vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AECP-VLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCSC-EEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCCC-eEEecCCCcCHHHHHHHHHHh
Confidence 467777777777776654322 2333 489999999999999999865
No 485
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.24 E-value=0.38 Score=45.94 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
....|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999865
No 486
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.17 E-value=0.43 Score=54.43 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=21.5
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-.++.|+|..|+|||||++.++..
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 359999999999999999999865
No 487
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=87.06 E-value=0.39 Score=52.33 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHHc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYN 227 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~ 227 (965)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999987
No 488
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.05 E-value=0.29 Score=47.05 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-.|.++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999865
No 489
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.03 E-value=0.4 Score=45.29 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999875
No 490
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=86.98 E-value=0.82 Score=44.88 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=54.5
Q ss_pred EEEEEEecCCChHHHHHHHHHccccccccccceEEEEcCCCCCHHHHHHHHHHHhcCCC------C----CCCCHHHHHH
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRNFEKRIWVCVSEPFDEFRIARAIIESLTGSA------S----NFGEFQSLMQ 275 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------~----~~~~~~~l~~ 275 (965)
-.|.+.|.||+||||+|..+..... +..++ +.++.+........ ...+..+.... . ...+++..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~-~~G~~-V~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~-- 80 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL-RQGVR-VMAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDAL-- 80 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH-HTTCC-EEEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHH--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH-HCCCC-EEEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHH--
Confidence 4588899999999999877776522 22233 34445543322221 11222222110 0 11233332
Q ss_pred HHHHHhCCceEEEEEeCCCcc------hhhchHhHHhhhcCCCCCcEEEEeecch
Q 002115 276 HIQECVEGKKFLLVLDDLWNE------VYYKWEPFYKCLKNGLHESKILITTRKE 324 (965)
Q Consensus 276 ~l~~~l~~kr~LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 324 (965)
+. .+.=++|+|++-.. ....|..+...++. |-.|+.|+...
T Consensus 81 -L~----~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s---gidVitT~Nlq 127 (228)
T 2r8r_A 81 -LK----AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA---GIDVYTTVNVQ 127 (228)
T ss_dssp -HH----HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT---TCEEEEEEEGG
T ss_pred -Hh----cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC---CCCEEEEcccc
Confidence 21 23458999986432 12256666654443 45788887644
No 491
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=86.92 E-value=0.41 Score=46.04 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
....|.|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999999876
No 492
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=86.89 E-value=0.47 Score=50.57 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
.+++|+|+.|.|||||.+.+..-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 48999999999999999999874
No 493
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=86.89 E-value=0.3 Score=45.58 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 002115 207 IISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 207 vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-|.|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5789999999999999998754
No 494
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.83 E-value=0.25 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.3
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
-.+++|+|..|.|||||++.+..-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 348999999999999999999763
No 495
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.69 E-value=0.86 Score=44.73 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.6
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...|.|-|..|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999875
No 496
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=86.62 E-value=0.46 Score=52.11 Aligned_cols=88 Identities=9% Similarity=0.104 Sum_probs=51.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccc--ccceEEEEcCCCC-CHHHHHHHHHHHhcCC-------CCCCCCHHH---
Q 002115 206 CIISLVGMGGIGKTTLAQFAYNNDGVKRN--FEKRIWVCVSEPF-DEFRIARAIIESLTGS-------ASNFGEFQS--- 272 (965)
Q Consensus 206 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 272 (965)
..++|+|..|+|||+|+.++.++...... =+.++++-+++.. ...++.+++.+.=... ..+.....+
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 36788999999999999999987433111 1356677777654 3455566665431110 111111111
Q ss_pred --HHHHHHHHh---CCceEEEEEeCC
Q 002115 273 --LMQHIQECV---EGKKFLLVLDDL 293 (965)
Q Consensus 273 --l~~~l~~~l---~~kr~LlVlDdv 293 (965)
..-.+.+++ +++..||++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 112233444 379999999997
No 497
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=86.59 E-value=0.88 Score=44.88 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
....|.|.|..|+||||+++.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999876
No 498
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.56 E-value=0.31 Score=51.47 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHHcc
Q 002115 204 GPCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
...++.|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4679999999999999999999864
No 499
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.51 E-value=0.33 Score=45.28 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.9
Q ss_pred cEEEEEEecCCChHHHHHHHHHcc
Q 002115 205 PCIISLVGMGGIGKTTLAQFAYNN 228 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v~~~ 228 (965)
..-|.|+|.+|+|||||...+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999999865
No 500
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=86.43 E-value=0.73 Score=56.60 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=19.6
Q ss_pred cEEEEEEecCCChHHHHHHHH
Q 002115 205 PCIISLVGMGGIGKTTLAQFA 225 (965)
Q Consensus 205 ~~vv~I~G~gGiGKTtLa~~v 225 (965)
-.+++|+|+.|.||||+.+.+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 469999999999999999988
Done!