Query 002118
Match_columns 964
No_of_seqs 133 out of 147
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 16:54:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002118.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002118hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4673 Transcription factor T 100.0 4E-131 1E-135 1109.7 77.2 900 1-958 1-960 (961)
2 PF12325 TMF_TATA_bd: TATA ele 100.0 1.3E-29 2.9E-34 243.1 14.1 103 852-954 18-120 (120)
3 PF12329 TMF_DNA_bd: TATA elem 99.6 9.1E-15 2E-19 130.2 9.1 69 434-502 1-69 (74)
4 KOG0161 Myosin class II heavy 99.2 0.00015 3.3E-09 95.4 71.5 41 903-943 1464-1504(1930)
5 PRK02224 chromosome segregatio 99.1 0.00019 4.1E-09 89.2 77.4 74 853-926 649-725 (880)
6 TIGR00606 rad50 rad50. This fa 99.0 0.00047 1E-08 89.7 71.4 69 854-922 988-1067(1311)
7 KOG4673 Transcription factor T 98.8 0.0012 2.5E-08 78.8 64.8 282 473-767 446-770 (961)
8 PRK02224 chromosome segregatio 98.8 0.0023 5E-08 79.8 73.5 109 373-485 183-291 (880)
9 PRK03918 chromosome segregatio 98.6 0.0055 1.2E-07 76.2 71.7 46 872-917 674-719 (880)
10 TIGR00606 rad50 rad50. This fa 98.6 0.0091 2E-07 78.0 71.3 140 568-709 476-627 (1311)
11 PF00038 Filament: Intermediat 98.6 0.0023 5E-08 70.4 41.3 117 623-749 165-282 (312)
12 TIGR02168 SMC_prok_B chromosom 98.5 0.014 3E-07 73.8 78.5 12 931-942 916-927 (1179)
13 KOG0161 Myosin class II heavy 98.5 0.024 5.2E-07 75.6 72.8 93 859-951 1388-1484(1930)
14 PF12128 DUF3584: Protein of u 98.4 0.022 4.9E-07 73.9 72.9 64 641-704 596-659 (1201)
15 TIGR02168 SMC_prok_B chromosom 98.4 0.021 4.6E-07 72.2 79.1 40 857-896 866-905 (1179)
16 KOG4674 Uncharacterized conser 98.2 0.064 1.4E-06 71.0 67.7 297 340-655 743-1053(1822)
17 KOG0994 Extracellular matrix g 98.0 0.11 2.3E-06 65.7 47.0 67 362-429 1266-1332(1758)
18 PF09730 BicD: Microtubule-ass 97.9 0.14 3E-06 63.3 40.9 269 670-951 80-394 (717)
19 KOG0977 Nuclear envelope prote 97.9 0.12 2.5E-06 62.0 38.1 79 348-434 41-119 (546)
20 PF00261 Tropomyosin: Tropomyo 97.7 0.1 2.2E-06 56.3 32.1 84 551-649 80-163 (237)
21 KOG0976 Rho/Rac1-interacting s 97.7 0.27 5.8E-06 60.4 44.5 106 592-708 295-400 (1265)
22 PF00261 Tropomyosin: Tropomyo 97.7 0.037 7.9E-07 59.6 27.5 72 581-656 162-233 (237)
23 COG1196 Smc Chromosome segrega 97.6 0.5 1.1E-05 61.6 78.5 42 439-480 296-337 (1163)
24 KOG4674 Uncharacterized conser 97.6 0.63 1.4E-05 62.2 72.3 74 567-640 777-850 (1822)
25 PF12128 DUF3584: Protein of u 97.6 0.63 1.4E-05 61.0 73.2 32 396-427 302-333 (1201)
26 KOG0612 Rho-associated, coiled 97.5 0.73 1.6E-05 59.2 49.5 63 367-430 462-524 (1317)
27 KOG0971 Microtubule-associated 97.5 0.61 1.3E-05 58.2 38.4 48 568-615 302-352 (1243)
28 TIGR02169 SMC_prok_A chromosom 97.5 0.72 1.6E-05 59.0 75.8 16 906-921 879-894 (1164)
29 PF01576 Myosin_tail_1: Myosin 97.4 3.6E-05 7.9E-10 95.9 0.0 101 857-957 693-808 (859)
30 PF09755 DUF2046: Uncharacteri 97.4 0.37 8.1E-06 54.2 33.8 132 345-487 23-156 (310)
31 KOG0996 Structural maintenance 97.4 0.89 1.9E-05 58.3 67.1 83 858-950 929-1011(1293)
32 PF07888 CALCOCO1: Calcium bin 97.4 0.59 1.3E-05 56.2 47.1 13 729-741 445-457 (546)
33 PF10174 Cast: RIM-binding pro 97.3 0.85 1.8E-05 57.2 61.7 37 914-950 546-582 (775)
34 PRK03918 chromosome segregatio 97.3 0.86 1.9E-05 57.2 76.3 24 592-615 409-432 (880)
35 COG1196 Smc Chromosome segrega 97.3 1.2 2.7E-05 58.2 78.5 48 344-391 167-214 (1163)
36 PF10174 Cast: RIM-binding pro 97.3 1 2.2E-05 56.5 65.5 36 904-939 673-708 (775)
37 PF00038 Filament: Intermediat 97.2 0.57 1.2E-05 51.8 33.2 87 647-747 164-255 (312)
38 KOG0612 Rho-associated, coiled 97.2 1.5 3.3E-05 56.5 42.1 27 901-927 1023-1049(1317)
39 PF09726 Macoilin: Transmembra 97.1 1.3 2.8E-05 55.1 37.9 81 407-489 488-575 (697)
40 PF09726 Macoilin: Transmembra 97.1 0.82 1.8E-05 56.8 32.4 16 463-478 422-437 (697)
41 KOG0250 DNA repair protein RAD 97.0 1.8 4E-05 55.3 35.2 41 432-472 310-350 (1074)
42 PRK04778 septation ring format 97.0 1.5 3.3E-05 53.2 45.3 18 599-616 352-369 (569)
43 KOG0994 Extracellular matrix g 96.9 2.6 5.7E-05 54.1 55.1 26 627-652 1511-1536(1758)
44 PF01576 Myosin_tail_1: Myosin 96.7 0.00037 8E-09 87.1 0.0 110 346-457 325-438 (859)
45 KOG0996 Structural maintenance 96.7 3.3 7.2E-05 53.5 63.3 89 402-490 262-351 (1293)
46 PF12718 Tropomyosin_1: Tropom 96.5 0.5 1.1E-05 47.7 20.6 89 595-695 35-123 (143)
47 KOG0971 Microtubule-associated 96.5 4.1 9E-05 51.3 40.5 21 340-361 223-243 (1243)
48 PF07888 CALCOCO1: Calcium bin 96.4 3.4 7.4E-05 50.0 51.5 38 449-486 210-247 (546)
49 PF05557 MAD: Mitotic checkpoi 96.4 0.0098 2.1E-07 73.3 9.3 23 931-953 614-636 (722)
50 KOG1029 Endocytic adaptor prot 96.3 4.8 0.0001 50.1 37.3 80 853-932 531-615 (1118)
51 KOG4643 Uncharacterized coiled 96.3 5.7 0.00012 50.7 51.9 28 364-391 192-219 (1195)
52 PRK11637 AmiB activator; Provi 96.1 3.9 8.5E-05 47.7 31.1 25 466-490 96-120 (428)
53 PF05701 WEMBL: Weak chloropla 96.1 5 0.00011 48.4 52.1 23 339-361 31-53 (522)
54 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.0 1.1 2.5E-05 44.3 19.6 60 554-613 64-123 (132)
55 PRK04863 mukB cell division pr 95.9 11 0.00024 50.9 51.1 98 588-700 513-613 (1486)
56 PF05701 WEMBL: Weak chloropla 95.9 6.1 0.00013 47.7 56.7 22 906-927 404-425 (522)
57 KOG0976 Rho/Rac1-interacting s 95.8 7.8 0.00017 48.5 50.4 32 716-747 484-515 (1265)
58 PF05483 SCP-1: Synaptonemal c 95.7 7.7 0.00017 47.9 57.8 118 623-747 530-654 (786)
59 PRK11637 AmiB activator; Provi 95.7 5.9 0.00013 46.3 29.8 20 724-743 235-254 (428)
60 COG4942 Membrane-bound metallo 95.6 6.8 0.00015 46.2 32.9 37 449-485 42-78 (420)
61 KOG0977 Nuclear envelope prote 95.4 9.1 0.0002 46.5 39.5 84 624-707 246-337 (546)
62 KOG0999 Microtubule-associated 95.4 9.1 0.0002 46.3 42.4 97 671-774 154-253 (772)
63 PF05622 HOOK: HOOK protein; 95.3 0.0097 2.1E-07 73.2 2.8 28 351-378 111-138 (713)
64 PF06705 SF-assemblin: SF-asse 95.2 5.7 0.00012 43.2 31.4 101 571-674 71-175 (247)
65 PRK04778 septation ring format 95.1 11 0.00024 45.9 44.6 114 369-482 28-156 (569)
66 PRK01156 chromosome segregatio 94.9 16 0.00034 46.6 73.6 25 591-615 419-443 (895)
67 PRK09039 hypothetical protein; 94.8 2.8 6E-05 48.0 20.3 27 554-580 44-70 (343)
68 PRK11281 hypothetical protein; 94.7 21 0.00045 47.1 40.6 92 592-684 84-181 (1113)
69 PF14662 CCDC155: Coiled-coil 94.7 4.5 9.8E-05 43.0 19.8 137 342-485 43-191 (193)
70 KOG1003 Actin filament-coating 94.6 7.5 0.00016 41.6 25.0 69 578-650 127-195 (205)
71 PF15070 GOLGA2L5: Putative go 94.1 20 0.00044 44.4 51.3 94 854-950 411-504 (617)
72 KOG4643 Uncharacterized coiled 94.0 26 0.00056 45.2 58.6 54 591-648 297-350 (1195)
73 PF15070 GOLGA2L5: Putative go 93.9 22 0.00048 44.1 42.1 43 575-617 266-308 (617)
74 PF07111 HCR: Alpha helical co 93.9 23 0.0005 44.2 62.0 99 854-955 475-581 (739)
75 PHA02562 46 endonuclease subun 93.6 20 0.00044 42.7 29.4 15 510-524 172-186 (562)
76 PF06160 EzrA: Septation ring 93.5 24 0.00051 43.1 47.0 55 561-616 311-365 (560)
77 PF12718 Tropomyosin_1: Tropom 93.4 6.3 0.00014 40.0 17.3 92 656-747 4-98 (143)
78 PF06160 EzrA: Septation ring 93.4 25 0.00053 43.0 44.9 262 369-650 24-308 (560)
79 KOG0963 Transcription factor/C 93.2 27 0.00059 42.9 51.4 49 670-726 307-355 (629)
80 KOG2129 Uncharacterized conser 93.1 22 0.00049 41.8 22.8 23 403-427 98-120 (552)
81 PF05622 HOOK: HOOK protein; 93.0 0.025 5.5E-07 69.7 -0.3 25 368-392 198-222 (713)
82 PF05557 MAD: Mitotic checkpoi 93.0 0.028 6E-07 69.4 0.0 137 567-707 65-205 (722)
83 KOG0963 Transcription factor/C 93.0 29 0.00063 42.7 31.8 69 343-418 16-84 (629)
84 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.7 11 0.00025 37.3 19.9 46 594-650 2-47 (132)
85 KOG1029 Endocytic adaptor prot 92.6 37 0.00079 42.9 39.1 31 648-678 489-519 (1118)
86 TIGR01005 eps_transp_fam exopo 92.4 37 0.0008 42.6 26.9 16 568-583 199-214 (754)
87 KOG1853 LIS1-interacting prote 92.4 21 0.00046 39.6 27.7 77 567-654 24-100 (333)
88 KOG2129 Uncharacterized conser 92.3 13 0.00029 43.6 19.7 165 343-511 137-323 (552)
89 PF10473 CENP-F_leu_zip: Leuci 91.9 2 4.4E-05 43.6 11.4 85 864-958 52-136 (140)
90 KOG0250 DNA repair protein RAD 91.7 54 0.0012 42.9 52.4 65 672-743 400-464 (1074)
91 COG1579 Zn-ribbon protein, pos 91.5 26 0.00056 38.7 22.9 69 551-619 105-173 (239)
92 PF04849 HAP1_N: HAP1 N-termin 91.4 31 0.00067 39.4 24.0 141 344-485 64-253 (306)
93 PF05667 DUF812: Protein of un 91.3 46 0.00099 41.3 32.0 48 340-387 326-373 (594)
94 KOG0995 Centromere-associated 91.1 45 0.00098 40.8 47.7 103 367-478 232-334 (581)
95 KOG0995 Centromere-associated 90.9 47 0.001 40.7 39.0 24 417-440 199-222 (581)
96 PRK01156 chromosome segregatio 90.8 58 0.0013 41.6 72.4 72 854-926 678-749 (895)
97 COG1842 PspA Phage shock prote 90.6 29 0.00063 37.9 21.8 80 580-665 105-186 (225)
98 PF09728 Taxilin: Myosin-like 90.5 36 0.00079 38.7 40.8 29 670-698 241-269 (309)
99 PF12325 TMF_TATA_bd: TATA ele 90.1 7.6 0.00016 38.5 13.3 91 339-452 13-103 (120)
100 PF08317 Spc7: Spc7 kinetochor 90.0 39 0.00085 38.4 25.5 102 640-741 144-249 (325)
101 PF04849 HAP1_N: HAP1 N-termin 89.9 41 0.0009 38.4 26.4 129 337-488 50-182 (306)
102 PF10498 IFT57: Intra-flagella 89.8 9.4 0.0002 44.2 15.9 127 571-704 192-318 (359)
103 PF10473 CENP-F_leu_zip: Leuci 89.8 25 0.00055 35.9 18.3 69 628-707 25-93 (140)
104 PHA02562 46 endonuclease subun 89.6 53 0.0011 39.3 32.9 22 463-484 178-199 (562)
105 COG2433 Uncharacterized conser 89.0 3.7 8.1E-05 49.9 12.2 82 866-947 431-512 (652)
106 TIGR03007 pepcterm_ChnLen poly 88.2 63 0.0014 38.3 25.4 67 872-938 318-384 (498)
107 PF08317 Spc7: Spc7 kinetochor 88.0 54 0.0012 37.3 22.0 29 588-616 142-170 (325)
108 COG4942 Membrane-bound metallo 87.6 69 0.0015 38.2 33.0 35 453-487 74-108 (420)
109 PF05010 TACC: Transforming ac 87.2 48 0.001 35.9 25.7 98 371-473 31-132 (207)
110 TIGR03185 DNA_S_dndD DNA sulfu 87.1 88 0.0019 38.8 33.2 48 570-617 244-291 (650)
111 KOG4593 Mitotic checkpoint pro 87.0 94 0.002 39.0 50.7 76 341-419 100-177 (716)
112 TIGR03007 pepcterm_ChnLen poly 86.9 74 0.0016 37.8 24.3 10 652-661 254-263 (498)
113 PRK09039 hypothetical protein; 86.7 67 0.0015 37.1 24.4 24 681-704 138-161 (343)
114 KOG0980 Actin-binding protein 86.3 1.1E+02 0.0025 39.3 34.0 105 590-702 412-516 (980)
115 PF10168 Nup88: Nuclear pore c 85.6 77 0.0017 40.2 21.3 57 437-493 609-666 (717)
116 PF09789 DUF2353: Uncharacteri 85.5 52 0.0011 37.9 18.0 85 555-657 71-156 (319)
117 PF08614 ATG16: Autophagy prot 85.4 1.4 2.9E-05 46.4 5.3 84 857-957 102-185 (194)
118 KOG0980 Actin-binding protein 85.2 1.3E+02 0.0028 38.9 29.8 112 551-673 346-466 (980)
119 PF15397 DUF4618: Domain of un 85.0 71 0.0015 35.8 27.9 42 620-668 38-79 (258)
120 PF15619 Lebercilin: Ciliary p 85.0 59 0.0013 34.8 22.9 61 641-701 50-110 (194)
121 PF10168 Nup88: Nuclear pore c 84.9 77 0.0017 40.2 20.8 32 667-698 633-664 (717)
122 PF05010 TACC: Transforming ac 84.3 66 0.0014 34.9 29.6 59 589-661 112-170 (207)
123 PRK10884 SH3 domain-containing 83.9 21 0.00046 38.4 13.5 39 622-660 88-126 (206)
124 COG0419 SbcC ATPase involved i 83.8 1.5E+02 0.0032 38.4 74.5 22 400-421 232-253 (908)
125 PF05667 DUF812: Protein of un 83.4 1.3E+02 0.0028 37.5 29.5 26 722-747 505-530 (594)
126 PLN03229 acetyl-coenzyme A car 83.2 95 0.0021 39.4 20.1 26 398-423 513-544 (762)
127 KOG0249 LAR-interacting protei 82.7 1.2E+02 0.0026 38.4 20.1 32 630-662 202-233 (916)
128 PF08614 ATG16: Autophagy prot 82.5 14 0.0003 38.9 11.3 71 675-745 111-181 (194)
129 PRK10929 putative mechanosensi 81.9 2E+02 0.0043 38.5 42.5 90 592-682 69-160 (1109)
130 KOG0243 Kinesin-like protein [ 81.0 2E+02 0.0043 38.0 50.6 141 339-491 408-557 (1041)
131 PF05911 DUF869: Plant protein 80.4 1.8E+02 0.004 37.3 27.1 115 631-747 71-208 (769)
132 PF04111 APG6: Autophagy prote 80.0 26 0.00056 39.9 13.1 83 866-951 45-127 (314)
133 COG1579 Zn-ribbon protein, pos 79.3 1.1E+02 0.0024 34.0 23.8 25 591-615 55-79 (239)
134 PF07106 TBPIP: Tat binding pr 78.0 28 0.00061 35.7 11.6 84 859-947 74-162 (169)
135 KOG0018 Structural maintenance 77.5 2.5E+02 0.0054 37.2 34.5 69 872-950 677-745 (1141)
136 KOG4360 Uncharacterized coiled 77.0 13 0.00029 44.6 9.8 74 864-937 212-303 (596)
137 PF09738 DUF2051: Double stran 76.7 52 0.0011 37.5 14.1 94 343-448 78-171 (302)
138 PF06005 DUF904: Protein of un 76.1 53 0.0012 30.0 11.4 68 341-417 3-70 (72)
139 PRK10884 SH3 domain-containing 76.0 44 0.00096 36.0 12.7 35 627-661 100-134 (206)
140 COG3074 Uncharacterized protei 75.2 42 0.00092 30.7 10.2 53 552-615 7-59 (79)
141 PF07111 HCR: Alpha helical co 75.1 2.4E+02 0.0052 35.8 58.2 92 382-478 138-230 (739)
142 PF09731 Mitofilin: Mitochondr 74.7 2.1E+02 0.0046 34.9 29.3 30 395-424 246-275 (582)
143 COG1340 Uncharacterized archae 74.7 1.6E+02 0.0035 33.6 31.4 68 646-714 132-199 (294)
144 PF04156 IncA: IncA protein; 74.0 68 0.0015 33.2 13.3 93 857-952 88-180 (191)
145 KOG3990 Uncharacterized conser 73.7 24 0.00052 39.2 10.0 76 335-428 218-295 (305)
146 PF10226 DUF2216: Uncharacteri 73.6 52 0.0011 35.3 12.1 66 363-428 48-136 (195)
147 PRK11281 hypothetical protein; 72.1 3.5E+02 0.0076 36.3 47.0 73 603-675 254-329 (1113)
148 COG3883 Uncharacterized protei 71.3 1.8E+02 0.004 32.8 26.4 145 344-488 33-191 (265)
149 PF12329 TMF_DNA_bd: TATA elem 71.1 35 0.00077 31.1 9.1 65 854-918 2-70 (74)
150 PF04899 MbeD_MobD: MbeD/MobD 70.8 46 0.001 30.4 9.6 61 623-690 6-66 (70)
151 PF06008 Laminin_I: Laminin Do 70.3 1.7E+02 0.0038 32.1 31.3 71 407-487 45-115 (264)
152 PRK15422 septal ring assembly 70.2 46 0.001 31.1 9.5 64 549-612 4-77 (79)
153 PF11180 DUF2968: Protein of u 69.3 1.4E+02 0.003 32.2 14.2 21 627-647 84-104 (192)
154 PF02403 Seryl_tRNA_N: Seryl-t 69.1 26 0.00057 33.2 8.3 67 856-922 28-101 (108)
155 PRK10246 exonuclease subunit S 68.6 3.9E+02 0.0084 35.4 69.7 26 906-931 826-851 (1047)
156 PF13514 AAA_27: AAA domain 68.5 4E+02 0.0086 35.5 67.2 145 333-486 337-493 (1111)
157 PF06810 Phage_GP20: Phage min 68.4 43 0.00094 34.5 10.2 70 865-944 14-83 (155)
158 COG2433 Uncharacterized conser 68.3 59 0.0013 40.2 12.6 12 439-450 489-500 (652)
159 PF15254 CCDC14: Coiled-coil d 68.2 3.5E+02 0.0077 34.8 20.2 19 854-872 835-853 (861)
160 PF10267 Tmemb_cc2: Predicted 68.1 85 0.0018 37.2 13.6 101 569-686 218-318 (395)
161 TIGR00634 recN DNA repair prot 68.0 2.9E+02 0.0064 33.8 26.8 80 339-419 151-231 (563)
162 PF08826 DMPK_coil: DMPK coile 67.8 47 0.001 29.6 8.8 22 595-616 25-46 (61)
163 KOG0804 Cytoplasmic Zn-finger 67.6 2.1E+02 0.0045 34.6 16.4 41 668-708 377-417 (493)
164 PF04111 APG6: Autophagy prote 67.5 80 0.0017 36.0 13.0 54 374-429 68-121 (314)
165 PF13870 DUF4201: Domain of un 67.4 1.6E+02 0.0034 30.5 19.6 123 342-474 6-134 (177)
166 PF04156 IncA: IncA protein; 67.2 1.6E+02 0.0035 30.5 15.4 54 371-426 96-149 (191)
167 PF12761 End3: Actin cytoskele 66.7 58 0.0012 35.1 10.9 47 586-632 94-140 (195)
168 PF15619 Lebercilin: Ciliary p 66.3 1.9E+02 0.0041 31.0 24.7 75 405-489 17-91 (194)
169 PRK10929 putative mechanosensi 66.3 4.5E+02 0.0098 35.3 39.7 26 342-367 58-83 (1109)
170 KOG4807 F-actin binding protei 65.9 2.9E+02 0.0062 32.9 28.4 148 339-529 291-438 (593)
171 PRK09841 cryptic autophosphory 65.8 2.8E+02 0.006 35.1 18.4 14 625-638 309-322 (726)
172 PF00769 ERM: Ezrin/radixin/mo 65.7 83 0.0018 34.7 12.3 100 855-957 31-130 (246)
173 PF09730 BicD: Microtubule-ass 65.4 3.9E+02 0.0084 34.2 60.4 79 878-959 583-686 (717)
174 TIGR03185 DNA_S_dndD DNA sulfu 64.7 3.6E+02 0.0078 33.6 39.4 51 437-487 208-258 (650)
175 PF09787 Golgin_A5: Golgin sub 64.5 3.3E+02 0.0072 33.1 26.7 25 626-650 213-237 (511)
176 PRK11519 tyrosine kinase; Prov 64.0 3E+02 0.0066 34.8 18.3 15 568-582 272-286 (719)
177 KOG0933 Structural maintenance 63.3 4.8E+02 0.01 34.6 55.2 46 596-652 735-780 (1174)
178 KOG0978 E3 ubiquitin ligase in 63.1 4.2E+02 0.0091 33.8 52.2 33 624-656 521-553 (698)
179 TIGR01005 eps_transp_fam exopo 62.7 4.1E+02 0.0089 33.6 29.2 42 596-637 289-333 (754)
180 PF13514 AAA_27: AAA domain 62.7 5E+02 0.011 34.6 71.3 51 589-645 467-517 (1111)
181 KOG4360 Uncharacterized coiled 62.5 3.7E+02 0.0081 33.1 21.2 135 352-486 72-253 (596)
182 KOG0163 Myosin class VI heavy 62.4 4.5E+02 0.0097 33.9 24.8 30 568-597 972-1001(1259)
183 PF11932 DUF3450: Protein of u 62.0 1.2E+02 0.0026 33.1 12.7 90 864-953 56-158 (251)
184 PF15450 DUF4631: Domain of un 61.6 3.9E+02 0.0084 32.9 46.0 43 625-667 374-416 (531)
185 PF12240 Angiomotin_C: Angiomo 61.5 2E+02 0.0043 31.4 13.7 51 410-460 23-86 (205)
186 PRK04863 mukB cell division pr 60.8 6.3E+02 0.014 35.1 77.3 100 854-953 989-1111(1486)
187 smart00787 Spc7 Spc7 kinetocho 59.5 3.2E+02 0.007 31.4 25.0 97 644-740 143-243 (312)
188 PF12709 Kinetocho_Slk19: Cent 59.2 1E+02 0.0022 29.4 9.8 50 395-450 33-86 (87)
189 PF12777 MT: Microtubule-bindi 59.0 3.3E+02 0.0072 31.3 19.8 98 855-955 219-317 (344)
190 TIGR03017 EpsF chain length de 58.7 3.5E+02 0.0076 31.6 25.8 16 649-664 258-273 (444)
191 PF15003 HAUS2: HAUS augmin-li 58.7 54 0.0012 37.0 9.3 90 365-472 49-140 (277)
192 PF07106 TBPIP: Tat binding pr 58.1 74 0.0016 32.7 9.7 68 340-421 70-137 (169)
193 PF10498 IFT57: Intra-flagella 57.8 3.7E+02 0.0081 31.5 17.9 78 628-705 221-298 (359)
194 PF00435 Spectrin: Spectrin re 57.7 96 0.0021 27.3 9.3 33 902-934 73-105 (105)
195 smart00787 Spc7 Spc7 kinetocho 57.7 3.5E+02 0.0075 31.1 23.1 49 438-486 144-192 (312)
196 PF10186 Atg14: UV radiation r 57.2 2.9E+02 0.0062 30.1 19.0 27 365-391 22-48 (302)
197 PF10212 TTKRSYEDQ: Predicted 56.7 4.6E+02 0.01 32.3 19.7 84 674-764 421-504 (518)
198 PF11559 ADIP: Afadin- and alp 56.6 2.2E+02 0.0048 28.6 17.1 51 650-700 78-128 (151)
199 PF09304 Cortex-I_coil: Cortex 56.2 88 0.0019 30.8 9.1 59 855-916 14-72 (107)
200 PF06005 DUF904: Protein of un 55.5 1.6E+02 0.0035 26.9 10.2 63 859-924 6-68 (72)
201 PF14915 CCDC144C: CCDC144C pr 54.6 3.9E+02 0.0085 30.8 31.5 152 568-741 68-226 (305)
202 PF04350 PilO: Pilus assembly 54.5 22 0.00047 34.8 5.0 59 883-942 4-62 (144)
203 COG1340 Uncharacterized archae 53.7 4E+02 0.0086 30.6 37.0 114 618-743 129-242 (294)
204 PF06785 UPF0242: Uncharacteri 53.7 1.3E+02 0.0028 35.0 11.2 87 854-950 131-221 (401)
205 PF14992 TMCO5: TMCO5 family 53.5 91 0.002 35.4 10.1 40 441-480 126-165 (280)
206 PF14197 Cep57_CLD_2: Centroso 53.2 1.1E+02 0.0024 27.8 8.7 47 854-900 9-55 (69)
207 PF06156 DUF972: Protein of un 53.1 49 0.0011 32.3 7.0 43 349-391 8-50 (107)
208 PF00769 ERM: Ezrin/radixin/mo 52.9 3.6E+02 0.0078 29.9 17.8 18 854-871 186-203 (246)
209 PRK10698 phage shock protein P 52.8 3.4E+02 0.0074 29.6 20.8 22 638-659 163-184 (222)
210 PF11932 DUF3450: Protein of u 51.8 3.6E+02 0.0077 29.5 14.9 50 852-901 23-72 (251)
211 TIGR03545 conserved hypothetic 51.6 1.9E+02 0.0042 35.7 13.3 86 626-711 163-250 (555)
212 PF15358 TSKS: Testis-specific 50.7 5.2E+02 0.011 31.1 17.2 49 910-959 348-396 (558)
213 PF04871 Uso1_p115_C: Uso1 / p 50.1 2.2E+02 0.0047 28.9 11.3 72 867-941 37-109 (136)
214 COG1842 PspA Phage shock prote 49.8 3.9E+02 0.0085 29.4 21.5 58 560-617 21-81 (225)
215 PF04012 PspA_IM30: PspA/IM30 49.7 3.5E+02 0.0076 28.8 23.8 27 590-616 114-140 (221)
216 TIGR02977 phageshock_pspA phag 48.2 3.8E+02 0.0083 28.8 23.4 20 593-612 118-137 (219)
217 PF15188 CCDC-167: Coiled-coil 47.9 66 0.0014 30.4 6.7 66 624-697 2-67 (85)
218 KOG1853 LIS1-interacting prote 47.8 4.6E+02 0.01 29.7 17.7 41 626-666 26-66 (333)
219 PRK13169 DNA replication intia 47.6 57 0.0012 32.1 6.5 41 351-391 10-50 (110)
220 PF09731 Mitofilin: Mitochondr 47.6 6.1E+02 0.013 31.0 23.9 38 854-893 529-566 (582)
221 KOG1962 B-cell receptor-associ 47.0 2.2E+02 0.0048 31.3 11.4 14 448-461 130-143 (216)
222 PF10146 zf-C4H2: Zinc finger- 46.6 4.4E+02 0.0096 29.1 15.2 93 626-729 10-102 (230)
223 PF04977 DivIC: Septum formati 46.5 42 0.00092 29.5 5.1 28 364-391 25-52 (80)
224 KOG1962 B-cell receptor-associ 46.4 2.5E+02 0.0053 30.9 11.6 21 685-705 149-169 (216)
225 PF04642 DUF601: Protein of un 46.2 58 0.0013 36.3 6.9 54 652-705 186-242 (311)
226 PF04912 Dynamitin: Dynamitin 45.9 5.5E+02 0.012 30.0 15.8 132 375-525 244-388 (388)
227 TIGR01010 BexC_CtrB_KpsE polys 45.9 2.5E+02 0.0055 32.1 12.5 86 868-953 174-265 (362)
228 KOG0946 ER-Golgi vesicle-tethe 45.6 8.2E+02 0.018 31.9 30.3 52 683-741 900-951 (970)
229 PF12711 Kinesin-relat_1: Kine 45.5 91 0.002 29.6 7.2 80 324-415 4-85 (86)
230 PRK12704 phosphodiesterase; Pr 45.3 6.7E+02 0.015 30.8 23.2 152 525-691 30-184 (520)
231 KOG1003 Actin filament-coating 45.2 4.5E+02 0.0097 28.7 24.5 30 675-704 104-133 (205)
232 KOG0964 Structural maintenance 44.5 9.2E+02 0.02 32.2 40.2 93 859-951 694-806 (1200)
233 PF01442 Apolipoprotein: Apoli 44.3 3.4E+02 0.0073 27.1 23.9 16 646-661 149-164 (202)
234 PRK09841 cryptic autophosphory 43.9 7.9E+02 0.017 31.2 17.9 55 367-421 271-325 (726)
235 COG4985 ABC-type phosphate tra 43.7 2.8E+02 0.006 31.0 11.4 82 645-745 161-244 (289)
236 PF05911 DUF869: Plant protein 43.1 8.7E+02 0.019 31.5 32.7 130 343-493 18-147 (769)
237 PF02403 Seryl_tRNA_N: Seryl-t 43.0 1.6E+02 0.0034 27.9 8.7 26 407-432 29-54 (108)
238 PF10212 TTKRSYEDQ: Predicted 42.6 5.5E+02 0.012 31.7 14.8 102 399-500 412-514 (518)
239 KOG1103 Predicted coiled-coil 42.5 6.4E+02 0.014 29.8 28.0 56 567-626 249-314 (561)
240 PRK11519 tyrosine kinase; Prov 42.3 8.3E+02 0.018 31.0 18.4 52 369-420 273-324 (719)
241 PRK00106 hypothetical protein; 42.3 7.7E+02 0.017 30.6 25.3 168 516-691 25-199 (535)
242 KOG0239 Kinesin (KAR3 subfamil 42.0 2.2E+02 0.0047 36.1 11.9 73 868-943 224-296 (670)
243 TIGR02449 conserved hypothetic 41.9 2.2E+02 0.0048 25.8 8.7 45 575-619 15-59 (65)
244 PF10186 Atg14: UV radiation r 41.7 4.9E+02 0.011 28.3 20.1 19 853-871 255-273 (302)
245 PF14197 Cep57_CLD_2: Centroso 41.7 1.4E+02 0.0029 27.2 7.5 38 350-387 27-64 (69)
246 PLN02678 seryl-tRNA synthetase 41.1 1.3E+02 0.0028 36.3 9.4 53 406-458 32-84 (448)
247 TIGR01000 bacteriocin_acc bact 40.9 6.9E+02 0.015 29.7 24.9 11 628-638 180-190 (457)
248 TIGR01000 bacteriocin_acc bact 40.8 6.9E+02 0.015 29.7 22.7 26 721-746 290-315 (457)
249 PF10267 Tmemb_cc2: Predicted 40.5 7.1E+02 0.015 29.8 26.4 62 859-920 214-276 (395)
250 PF09787 Golgin_A5: Golgin sub 40.4 7.6E+02 0.017 30.1 33.3 83 568-650 212-297 (511)
251 TIGR03319 YmdA_YtgF conserved 40.1 7.9E+02 0.017 30.2 23.4 154 525-691 20-178 (514)
252 PRK06975 bifunctional uroporph 39.8 3.3E+02 0.0071 34.3 13.0 57 594-661 377-436 (656)
253 TIGR02894 DNA_bind_RsfA transc 39.8 1.5E+02 0.0032 31.2 8.4 49 875-926 101-149 (161)
254 PRK05431 seryl-tRNA synthetase 39.6 1.4E+02 0.003 35.5 9.4 71 406-490 27-97 (425)
255 PF07058 Myosin_HC-like: Myosi 39.3 4.5E+02 0.0097 30.5 12.6 49 341-392 34-88 (351)
256 PF09789 DUF2353: Uncharacteri 39.3 6.8E+02 0.015 29.2 24.4 41 671-711 131-171 (319)
257 COG4026 Uncharacterized protei 38.9 3E+02 0.0064 30.6 10.7 35 671-705 133-167 (290)
258 PRK00409 recombination and DNA 38.6 9.9E+02 0.022 30.9 17.6 21 5-25 60-80 (782)
259 PF01486 K-box: K-box region; 38.0 2.6E+02 0.0057 26.4 9.3 44 367-417 16-59 (100)
260 PF04012 PspA_IM30: PspA/IM30 37.8 5.3E+02 0.011 27.4 26.6 83 562-644 22-108 (221)
261 COG1382 GimC Prefoldin, chaper 37.1 4.5E+02 0.0098 26.5 12.2 28 624-651 10-37 (119)
262 PF07889 DUF1664: Protein of u 37.1 2E+02 0.0044 29.0 8.7 24 875-898 58-81 (126)
263 KOG0978 E3 ubiquitin ligase in 36.5 1E+03 0.023 30.5 53.7 24 408-431 228-251 (698)
264 PRK13428 F0F1 ATP synthase sub 36.5 8.3E+02 0.018 29.4 15.4 12 616-627 159-170 (445)
265 PLN02678 seryl-tRNA synthetase 36.4 1E+02 0.0022 37.0 7.7 38 857-894 33-70 (448)
266 PF10234 Cluap1: Clusterin-ass 36.2 3.3E+02 0.0072 30.8 11.1 18 512-529 225-242 (267)
267 COG0419 SbcC ATPase involved i 36.0 1.1E+03 0.024 30.7 74.0 30 628-662 482-511 (908)
268 KOG0979 Structural maintenance 35.7 1.2E+03 0.027 31.1 33.0 73 369-449 656-728 (1072)
269 TIGR03752 conj_TIGR03752 integ 35.6 3.4E+02 0.0074 33.1 11.6 51 371-430 74-125 (472)
270 PF09744 Jnk-SapK_ap_N: JNK_SA 34.9 5.5E+02 0.012 26.9 13.7 119 358-482 38-158 (158)
271 PRK13182 racA polar chromosome 34.3 1.7E+02 0.0038 30.9 8.1 66 854-919 82-149 (175)
272 KOG0982 Centrosomal protein Nu 34.2 9.3E+02 0.02 29.3 31.9 52 587-652 402-453 (502)
273 PF06810 Phage_GP20: Phage min 34.2 4E+02 0.0087 27.6 10.6 44 444-487 1-48 (155)
274 PF06428 Sec2p: GDP/GTP exchan 34.0 1E+02 0.0022 29.9 5.9 75 869-946 6-81 (100)
275 PRK00888 ftsB cell division pr 33.8 95 0.0021 30.1 5.7 27 365-391 36-62 (105)
276 PRK06231 F0F1 ATP synthase sub 33.4 6.4E+02 0.014 27.1 15.4 8 593-600 164-171 (205)
277 PF13094 CENP-Q: CENP-Q, a CEN 33.3 3.7E+02 0.0081 27.4 10.2 76 328-426 6-81 (160)
278 KOG0239 Kinesin (KAR3 subfamil 33.2 1.1E+03 0.025 30.0 17.7 77 401-478 235-312 (670)
279 TIGR02209 ftsL_broad cell divi 33.1 1.2E+02 0.0025 27.5 5.9 30 362-391 30-59 (85)
280 PRK05431 seryl-tRNA synthetase 33.1 1.3E+02 0.0028 35.8 7.7 34 859-892 30-63 (425)
281 PRK10920 putative uroporphyrin 32.4 6.3E+02 0.014 30.1 13.1 57 593-660 90-150 (390)
282 PF06657 Cep57_MT_bd: Centroso 32.0 2.8E+02 0.006 25.8 8.1 48 854-901 14-73 (79)
283 PF05266 DUF724: Protein of un 32.0 5.2E+02 0.011 27.7 11.3 77 865-944 97-173 (190)
284 PF10234 Cluap1: Clusterin-ass 31.8 8.1E+02 0.018 27.8 14.4 17 645-661 162-178 (267)
285 KOG4593 Mitotic checkpoint pro 31.5 1.2E+03 0.027 29.9 63.1 29 920-948 549-577 (716)
286 PF09728 Taxilin: Myosin-like 31.4 8.5E+02 0.018 28.0 41.0 60 688-747 203-269 (309)
287 KOG0804 Cytoplasmic Zn-finger 31.4 1E+03 0.023 29.0 18.2 11 634-644 328-338 (493)
288 PF15290 Syntaphilin: Golgi-lo 31.1 8.7E+02 0.019 28.0 13.2 67 597-708 70-138 (305)
289 PF15272 BBP1_C: Spindle pole 30.9 2.5E+02 0.0054 30.5 8.6 63 347-417 87-149 (196)
290 KOG4552 Vitamin-D-receptor int 30.9 7.7E+02 0.017 27.3 14.5 85 399-487 7-95 (272)
291 PF07058 Myosin_HC-like: Myosi 30.7 9.2E+02 0.02 28.1 15.3 33 623-662 10-42 (351)
292 PF13851 GAS: Growth-arrest sp 30.2 7.2E+02 0.016 26.7 22.2 100 653-752 28-137 (201)
293 KOG1655 Protein involved in va 29.7 7.1E+02 0.015 27.3 11.6 93 855-953 31-149 (218)
294 PRK13169 DNA replication intia 29.6 2.2E+02 0.0048 28.2 7.4 47 344-390 10-56 (110)
295 TIGR01069 mutS2 MutS2 family p 29.6 1.3E+03 0.029 29.7 17.1 18 7-24 59-76 (771)
296 PF07765 KIP1: KIP1-like prote 29.4 2E+02 0.0044 26.7 6.6 49 904-952 13-72 (74)
297 PF13863 DUF4200: Domain of un 29.1 5.3E+02 0.012 24.9 15.8 32 627-658 7-38 (126)
298 COG3883 Uncharacterized protei 28.9 9.1E+02 0.02 27.5 26.5 31 584-614 200-230 (265)
299 TIGR00414 serS seryl-tRNA synt 28.7 2.7E+02 0.0059 33.0 9.4 72 406-490 29-100 (418)
300 PF04102 SlyX: SlyX; InterPro 28.6 2.8E+02 0.006 24.9 7.3 18 650-667 2-19 (69)
301 PF04582 Reo_sigmaC: Reovirus 28.5 1.1E+02 0.0023 35.5 5.8 110 594-746 27-136 (326)
302 PF06785 UPF0242: Uncharacteri 28.3 1E+03 0.023 28.0 18.5 107 370-485 99-213 (401)
303 TIGR02894 DNA_bind_RsfA transc 28.1 7.5E+02 0.016 26.2 11.4 43 902-951 104-146 (161)
304 PF02044 Bombesin: Bombesin-li 28.1 23 0.0005 23.0 0.3 12 59-70 3-14 (14)
305 PF02181 FH2: Formin Homology 28.0 3.9E+02 0.0084 30.6 10.3 87 854-946 278-369 (370)
306 TIGR00414 serS seryl-tRNA synt 28.0 3.5E+02 0.0076 32.1 10.2 68 857-924 30-105 (418)
307 PF14739 DUF4472: Domain of un 27.9 6.1E+02 0.013 25.2 11.1 90 628-717 16-107 (108)
308 PRK14127 cell division protein 27.9 2.9E+02 0.0063 27.3 7.9 48 369-417 43-102 (109)
309 KOG3119 Basic region leucine z 27.6 2.1E+02 0.0045 32.1 7.8 16 136-151 42-57 (269)
310 PF05837 CENP-H: Centromere pr 27.5 4E+02 0.0087 25.8 8.8 45 857-901 3-47 (106)
311 TIGR02231 conserved hypothetic 27.4 5.5E+02 0.012 31.1 11.9 20 642-661 128-147 (525)
312 PF03915 AIP3: Actin interacti 27.0 1.2E+03 0.026 28.2 17.5 119 341-474 150-275 (424)
313 TIGR00634 recN DNA repair prot 26.8 1.3E+03 0.027 28.5 27.1 17 730-746 347-363 (563)
314 PF00170 bZIP_1: bZIP transcri 26.7 2.6E+02 0.0057 24.2 6.8 39 862-900 24-62 (64)
315 PLN03229 acetyl-coenzyme A car 26.7 1.5E+03 0.033 29.4 27.5 40 373-412 432-478 (762)
316 PF05546 She9_MDM33: She9 / Md 26.6 8.9E+02 0.019 26.6 13.8 65 341-405 31-98 (207)
317 PF05377 FlaC_arch: Flagella a 26.6 2.5E+02 0.0055 24.7 6.4 9 938-946 36-44 (55)
318 PF12001 DUF3496: Domain of un 26.5 5.1E+02 0.011 25.8 9.3 31 678-708 5-36 (111)
319 PRK11546 zraP zinc resistance 26.5 3.6E+02 0.0078 27.9 8.6 73 846-921 40-115 (143)
320 KOG0811 SNARE protein PEP12/VA 26.3 6E+02 0.013 28.8 11.0 30 921-950 171-200 (269)
321 PRK06568 F0F1 ATP synthase sub 25.8 7.8E+02 0.017 25.7 15.4 9 592-600 119-127 (154)
322 PF10883 DUF2681: Protein of u 25.7 1.1E+02 0.0024 29.1 4.4 28 364-391 24-51 (87)
323 PF15294 Leu_zip: Leucine zipp 25.7 1.1E+03 0.023 27.2 15.1 135 318-452 108-274 (278)
324 KOG0972 Huntingtin interacting 25.6 1.1E+03 0.024 27.4 16.0 40 665-704 265-304 (384)
325 PRK13182 racA polar chromosome 25.5 5.6E+02 0.012 27.2 10.1 55 563-617 92-147 (175)
326 PLN02320 seryl-tRNA synthetase 25.3 2.9E+02 0.0064 33.8 9.0 24 468-491 139-162 (502)
327 PRK14143 heat shock protein Gr 25.3 9.5E+02 0.021 26.8 12.2 78 335-419 60-137 (238)
328 PF12795 MscS_porin: Mechanose 25.2 9E+02 0.02 26.2 28.5 93 592-684 42-138 (240)
329 PF07795 DUF1635: Protein of u 24.9 1.4E+02 0.003 32.8 5.6 39 856-894 25-63 (214)
330 KOG4451 Uncharacterized conser 24.9 6.7E+02 0.015 28.1 10.6 86 863-948 39-124 (286)
331 PF11629 Mst1_SARAH: C termina 24.6 1.3E+02 0.0028 26.0 4.1 16 905-920 22-37 (49)
332 KOG0249 LAR-interacting protei 24.5 1.6E+03 0.036 29.1 26.3 17 407-423 70-86 (916)
333 PF03962 Mnd1: Mnd1 family; I 24.4 8.8E+02 0.019 25.8 12.5 99 856-954 61-162 (188)
334 PF05600 DUF773: Protein of un 24.4 3.2E+02 0.0069 33.5 9.1 63 854-919 436-499 (507)
335 KOG1899 LAR transmembrane tyro 24.3 1.1E+02 0.0024 38.1 5.2 59 864-925 104-162 (861)
336 KOG2264 Exostosin EXT1L [Signa 24.3 5.6E+02 0.012 32.1 10.7 27 717-743 123-149 (907)
337 KOG2072 Translation initiation 24.3 1.7E+03 0.038 29.3 43.1 77 585-666 667-743 (988)
338 PF08172 CASP_C: CASP C termin 24.2 7E+02 0.015 27.9 11.0 22 369-390 12-33 (248)
339 PF06818 Fez1: Fez1; InterPro 24.2 9.7E+02 0.021 26.3 17.1 123 650-772 15-170 (202)
340 PRK04325 hypothetical protein; 24.1 5.6E+02 0.012 23.5 8.7 51 554-615 7-57 (74)
341 PF09738 DUF2051: Double stran 24.1 1.1E+03 0.025 27.1 13.9 46 853-898 80-125 (302)
342 PF12761 End3: Actin cytoskele 24.0 9E+02 0.02 26.4 11.3 46 339-384 93-142 (195)
343 TIGR03752 conj_TIGR03752 integ 23.9 5.8E+02 0.013 31.2 10.9 80 857-957 59-139 (472)
344 PF05335 DUF745: Protein of un 23.8 9.4E+02 0.02 25.9 15.0 111 580-701 49-172 (188)
345 COG4913 Uncharacterized protei 23.8 8.9E+02 0.019 31.4 12.5 77 853-929 298-382 (1104)
346 PF07200 Mod_r: Modifier of ru 23.7 4.8E+02 0.01 26.1 8.9 26 904-929 78-105 (150)
347 PRK08476 F0F1 ATP synthase sub 23.6 7.7E+02 0.017 24.9 16.2 16 521-536 57-72 (141)
348 PF08826 DMPK_coil: DMPK coile 23.4 4.8E+02 0.01 23.4 7.7 24 405-428 37-60 (61)
349 smart00150 SPEC Spectrin repea 23.3 4E+02 0.0087 23.3 7.5 69 865-933 32-101 (101)
350 PF07889 DUF1664: Protein of u 23.0 8.1E+02 0.017 24.9 12.1 60 625-691 48-107 (126)
351 PF10211 Ax_dynein_light: Axon 22.9 8.4E+02 0.018 26.0 10.9 71 459-529 113-187 (189)
352 PRK00295 hypothetical protein; 22.9 5.7E+02 0.012 23.1 8.7 50 556-616 5-54 (68)
353 TIGR02449 conserved hypothetic 22.8 5.1E+02 0.011 23.5 7.8 16 403-418 38-53 (65)
354 COG3074 Uncharacterized protei 22.3 6.4E+02 0.014 23.5 9.5 67 854-923 8-74 (79)
355 PF15369 KIAA1328: Uncharacter 22.3 5.4E+02 0.012 30.0 9.7 60 571-641 9-68 (328)
356 KOG4403 Cell surface glycoprot 22.2 1.5E+03 0.032 27.7 15.3 58 596-666 310-368 (575)
357 CHL00118 atpG ATP synthase CF0 22.2 8.4E+02 0.018 24.8 15.8 16 521-536 72-87 (156)
358 PF08647 BRE1: BRE1 E3 ubiquit 21.9 5.2E+02 0.011 24.6 8.2 58 854-911 28-85 (96)
359 PF01920 Prefoldin_2: Prefoldi 21.5 6.4E+02 0.014 23.2 9.9 41 439-486 56-96 (106)
360 PF10224 DUF2205: Predicted co 21.4 4.5E+02 0.0097 24.8 7.4 51 341-391 15-65 (80)
361 PF14931 IFT20: Intraflagellar 21.4 8.4E+02 0.018 24.5 12.9 38 434-471 83-120 (120)
362 PF14073 Cep57_CLD: Centrosome 21.4 1E+03 0.023 25.6 19.9 84 343-431 5-88 (178)
363 PRK02119 hypothetical protein; 21.2 3.7E+02 0.0081 24.6 6.8 11 409-419 39-49 (73)
364 PF10018 Med4: Vitamin-D-recep 21.2 6.1E+02 0.013 26.7 9.5 57 437-497 4-60 (188)
365 PF09403 FadA: Adhesion protei 21.1 8.8E+02 0.019 24.6 13.0 65 340-407 25-93 (126)
366 COG3167 PilO Tfp pilus assembl 21.1 2.9E+02 0.0063 30.0 6.9 43 889-931 60-102 (211)
367 KOG0979 Structural maintenance 21.1 2.1E+03 0.046 29.1 31.8 49 438-486 629-677 (1072)
368 PRK15422 septal ring assembly 21.0 7.2E+02 0.016 23.5 10.2 70 853-925 7-76 (79)
369 PRK15178 Vi polysaccharide exp 20.9 1.1E+03 0.023 28.7 12.2 92 862-957 240-337 (434)
370 PRK00295 hypothetical protein; 20.8 5.7E+02 0.012 23.0 7.8 17 650-666 3-19 (68)
371 KOG4302 Microtubule-associated 20.7 1.2E+03 0.025 29.9 12.9 92 860-954 64-184 (660)
372 PF04375 HemX: HemX; InterPro 20.7 1.4E+03 0.03 26.8 13.5 22 639-660 123-144 (372)
373 KOG4196 bZIP transcription fac 20.7 3.1E+02 0.0068 28.1 6.7 42 879-923 75-116 (135)
374 PF12808 Mto2_bdg: Micro-tubul 20.7 2.6E+02 0.0057 24.3 5.3 42 350-391 5-50 (52)
375 PRK10722 hypothetical protein; 20.5 3E+02 0.0066 30.8 7.1 57 568-653 156-212 (247)
376 PF09311 Rab5-bind: Rabaptin-l 20.5 55 0.0012 34.4 1.6 36 866-901 10-45 (181)
377 PF09403 FadA: Adhesion protei 20.4 9.1E+02 0.02 24.5 13.3 83 853-935 23-115 (126)
378 PF05529 Bap31: B-cell recepto 20.4 8.3E+02 0.018 25.5 10.3 22 466-487 161-182 (192)
379 PRK03947 prefoldin subunit alp 20.3 8.5E+02 0.018 24.1 12.6 43 443-485 92-134 (140)
380 PF07794 DUF1633: Protein of u 20.3 9.5E+02 0.021 29.7 11.4 94 857-956 604-707 (790)
381 COG3206 GumC Uncharacterized p 20.3 1.5E+03 0.032 26.9 25.6 67 595-661 202-273 (458)
382 TIGR01069 mutS2 MutS2 family p 20.1 2E+03 0.042 28.3 16.9 11 440-450 224-234 (771)
383 smart00498 FH2 Formin Homology 20.1 1E+03 0.023 28.2 12.1 58 897-954 319-378 (432)
384 PF06156 DUF972: Protein of un 20.0 3.3E+02 0.0071 26.8 6.6 48 857-904 8-55 (107)
No 1
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=100.00 E-value=4.4e-131 Score=1109.68 Aligned_cols=900 Identities=52% Similarity=0.674 Sum_probs=698.1
Q ss_pred Cccccc-cccCCCCCchhhhhhhhHHHHHhHHhhhhcccCcccccccCCCCCCCCCCCCcch-----------hhhhccc
Q 002118 1 MAWFSG-KVSLGNFPDLAGAVNKFSESVKNIEKNFDTALGFDEKAEKSAKPETSSSNEGLWP-----------VMSFMGH 68 (964)
Q Consensus 1 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 68 (964)
|+||+| |++||+|||+.|+||||+++||||.+|||+++||+++++.+..+. ++.+|| ||+||||
T Consensus 1 MsWF~~Ak~sl~~~lDiq~~~~~~~~~~k~~p~~~~~~~Gg~d~s~~~~~~n----a~~~~Pp~a~tka~~~Pv~~~~~~ 76 (961)
T KOG4673|consen 1 MSWFSGAKVSLGGFLDIQGAVNKFQESVKNIPKNFDNALGGDDKSDSAAEDN----ASSMWPPAADTKALFDPVMSFMGN 76 (961)
T ss_pred CchhhhhhhhhcccccccccchhhhhcccCCcccCCcccCCCCccccccccc----CCCCCCCCCCcccccccHHHhccc
Confidence 999999 999999999999999999999999999999999999999988876 667787 9999999
Q ss_pred CCCCCCCC-cCCCCCCCCCCCCCcccccccccccccccccccchhhhccCC---CCCCcCC-CCCcccccccchhccCCC
Q 002118 69 KSEGSSPT-ESSGKPQTPQQQSKPEEKVGVETERSVHSATGEVYADKQKAS---PKTEKDD-EHPDTAENLDFVVSEHGK 143 (964)
Q Consensus 69 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~ 143 (964)
.+.+.|++ +.+--...|-+-+-|++..+ ++|-...+ ..++.-++ +..+-|+ ..|.+.+ .|+.++..
T Consensus 77 t~f~~P~~~~~~vvt~pPs~~~~peee~~-----S~~~g~~q-s~~~ds~~~~s~~~~a~~~~sP~~~e---~~~~vP~v 147 (961)
T KOG4673|consen 77 TSFEKPDTLEDSVVTEPPSQIEQPEEEAG-----SVKLGTEQ-SVSVDSNKETSVRREADQADSPEVTE---TVVLVPKV 147 (961)
T ss_pred ccccCcccccccccccCCCcccCchhhcc-----cchhccch-hhhhhhhhhhcccccccCCCCCCCcc---ccCcCccc
Confidence 99999733 22222233333333332211 22222221 11111111 1112222 1222222 25555555
Q ss_pred CCCCCCcccCCCCchhhhccCCCCccchhhhhhhccCCCCcccccccccCCCC-----------ccccccccccccccCc
Q 002118 144 VDSESNIVPNDPSESAIQNIDSSEPVDNQQQKVTSDLGTSEETESGEAKSGPF-----------EADQIEISSSLRDESD 212 (964)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 212 (964)
.+..|+++.-..++-..+..+++ ++.++-...-..++.+..-+.|. +-+.-|+++..+.+-.
T Consensus 148 ~~~~Se~~lE~is~ts~qt~~~~-------~~~~~l~P~~~ps~p~S~~s~~~~~tSd~ee~d~Ed~~~e~~~~~r~~t~ 220 (961)
T KOG4673|consen 148 DEPQSEILLEEISETSLQTPESS-------GYKTSLQPNEKPSMPASQDSQPEQPTSDAEESDPEDSEAEEVTVERKDTV 220 (961)
T ss_pred chhhhHHHHHHHHhhhccCcccc-------ccccccCCCCCCCCCccccccCCCCcchhhhcCcccchhhhhhhhhcccc
Confidence 55555554222222222211111 01111000000001111111111 1122344444444444
Q ss_pred ccccccccccccccccchhHHhhhhhhhhccCCCcccccchhhhhccC---CCCCCCccchhhhhhhhhhcccccCCCCc
Q 002118 213 NVANACQSKDEGKKEESNYEEKSQAEEMIETGSPVQAEVSSTIQAEVG---TESSDSQSVSAEETERVRELLSSSASSPK 289 (964)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (964)
...+.....++.++.++....++.+.....+.|+..||..+|+.+..| +.+.++|+..++ ..+.+.+++|.+||
T Consensus 221 hs~~s~~~mk~~~~~~~~~a~~~~n~~~d~~~Ss~~FE~i~~~~~~~gkSr~~s~v~~~d~~~---~s~~s~~eiiin~n 297 (961)
T KOG4673|consen 221 HSPVSDGQMKITYMDETTNAQEILNENLDGRTSSKNFEVIPDINHVNGKSRIESPVAHPDLIF---ESDGSPYEIIINKN 297 (961)
T ss_pred cCccchhhHHHHHHHhhhhhhhhhccccccccccchhhhchhhhhccCCCCCCCCCCChhhhc---cCCCCcceeecCCC
Confidence 444555667789999999999999999999999999999999999884 455555555444 44567788888887
Q ss_pred ccccc------cccCCCCCCCCccchhhhhhhccccCcccccccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 290 AVSET------VCAPVSPEHGEKDKAVEVEQQANDSGIVSEEQRLSSEANVSVSADSVCELEKLKREMKMMETALQGAAR 363 (964)
Q Consensus 290 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~e~ekl~~~~~~~~~~l~~~~r 363 (964)
+.|++ ++++|++.-+......+-. . +++-++..|.+++.+.+.||+|++++|+||+.+|+ +|
T Consensus 298 g~SsT~e~ser~s~~v~~el~~~~~~~e~~---------e-s~Rs~s~~n~~~~d~~q~eLdK~~~~i~~Ln~~le--aR 365 (961)
T KOG4673|consen 298 GRSSTDEISERISDFVSRELDSRLDTSELN---------E-SQRSSSATNVSDSDDVQLELDKTKKEIKMLNNALE--AR 365 (961)
T ss_pred CCccccccccccchHHHHHhccchhhHHhh---------h-ccCCCCCccccCchhHHHHHHHHHHHHHHHHHHHH--HH
Confidence 76655 5566666655554443321 1 45557888888886669999999999999999999 56
Q ss_pred HHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHHH----
Q 002118 364 QAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQN--KKSDAA---- 437 (964)
Q Consensus 364 ~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KErD~Lrke~a--k~s~~~---- 437 (964)
++|.+++++++++-.++++....+.++++++++.+++|+++|+|||++||+|||++|||||+||++.+ +...+.
T Consensus 366 eaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~ 445 (961)
T KOG4673|consen 366 EAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLK 445 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Confidence 66677778888887888888888899999999999999999999999999999999999999999988 444333
Q ss_pred HHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHhHHHHHHhHHHHHHHHHHHH
Q 002118 438 ALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKG---LVTKLQVEENKVESIKRDKTATEKLLQETI 514 (964)
Q Consensus 438 a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~---Lk~Kle~e~~k~es~kr~~~a~EK~lqe~i 514 (964)
+.|+||||+|++||+|||||||+||++++||||||+|+++.+.-... +-.+++.+.+++..+.+.++++||.+++.|
T Consensus 446 DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I 525 (961)
T KOG4673|consen 446 DELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETI 525 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999998854433 446889999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 515 EKHQVELGEQKDYYTN--ALAAAKEAEELAEARANNEARAEL--ESRLR--EAGERETMLVQALEELRQTLSRTEQQAVF 588 (964)
Q Consensus 515 ek~q~eL~aqk~~~~~--~L~aAke~e~lAE~ra~~Ea~~~L--e~~lk--EaeEre~~L~qqIedLRe~LeRaeq~a~~ 588 (964)
.+++.++..++.+|.+ .+.++.+...+|+.+++.+++-.| +.+++ ++.++..+|.++|.|||.+|++.+|.+++
T Consensus 526 ~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aar 605 (961)
T KOG4673|consen 526 EKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAAR 605 (961)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986 566666666778888888887755 45566 78888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 589 REDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERE 668 (964)
Q Consensus 589 rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eRE 668 (964)
||++||+||.+|++||+++|.|+++++++||.+|||||||||+||.++..++.+|+..|++|+.||.+.+..++.++.+|
T Consensus 606 rEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~e 685 (961)
T KOG4673|consen 606 REDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEE 685 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 669 RSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQE 748 (964)
Q Consensus 669 r~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er~r~~~~r~e~~aakeE~~~le~r~~qLEeeL~elr~k~~~e 748 (964)
+.....+..++-.+-....+++++|+++.+|++.|+.+++|+.+++++|.+++++++.+++++.+++.+++.++.+++++
T Consensus 686 qgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~ 765 (961)
T KOG4673|consen 686 QGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQE 765 (961)
T ss_pred hhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777667777888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhh-hhhhccccCCCcccccccccccCCccccCCCCCCCCCchhhhhhccccCC
Q 002118 749 LQEALMHRELLQQEIEREKTARVDLERRA-SAESAAVSEKTPIARHTSAFENGSLSRKLSSASSLGSMEESHFLQASLDS 827 (964)
Q Consensus 749 lqea~~~~e~lqq~lE~Ek~~r~elE~~~-~~~s~~~s~q~~~~~~~s~~~~~s~tr~lSs~sSigs~~~s~~lQ~s~d~ 827 (964)
++....+-++.+..++.++..+.++++.. +..+.| ..|..+|+++.+ ..+.+.+|.
T Consensus 766 lq~~ll~ve~~~k~~e~~~~~~~~lers~a~i~Ssp---------------------~~s~~~SgSnee-~ag~~~~f~- 822 (961)
T KOG4673|consen 766 LQEVLLHVELIQKDLEREKASRLDLERSTARINSSP---------------------VSSQLPSGSNEE-IAGQNSAFE- 822 (961)
T ss_pred hhHHHHHHHHHHHHhhhCHHHHhhcccccCccCCCC---------------------chhhCCCCchHh-Hhcccchhh-
Confidence 99888777777777777776666666522 122211 112222222222 112222222
Q ss_pred CCccccCCCCC--CCCCCcccccCCCh----h-HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 828 SDSLSDRKNTV--EPTMSPYYVKSMTP----S-AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAE 900 (964)
Q Consensus 828 sd~~s~~~~~g--~~~~S~~~~~s~tp----S-~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~ 900 (964)
.|..+...++| +++|+||++...+| + ++++.|||||||++||||+|++|+++|+.|++|||+||++||.|+.+
T Consensus 823 ~dd~s~~~s~gqq~~~~~~~hl~~~~~nttt~eh~eall~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek 902 (961)
T KOG4673|consen 823 NDDFSEKRSMGQQEATMSPYHLKSITPNTTTSEHYEALLRQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLREK 902 (961)
T ss_pred ccchhhhhcCCCCCcccchhHHhhhcCCCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333445 44677775544433 3 89999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Q 002118 901 AAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEMYREQVNLLVNKVI 958 (964)
Q Consensus 901 ~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEELraDL~DVKeMYR~QID~LLkQi~ 958 (964)
+++||+|+.+|.||++||+|+|||||||+|+.||||+||.|||+|||+|||+||.++.
T Consensus 903 ~~~~p~~~~~ledL~qRy~a~LqmyGEk~Ee~EELrlDl~dlK~mYk~QIdeLl~~~~ 960 (961)
T KOG4673|consen 903 ADRVPGIKAELEDLRQRYAAALQMYGEKDEELEELRLDLVDLKEMYKEQIDELLNKIQ 960 (961)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999999874
No 2
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=99.96 E-value=1.3e-29 Score=243.05 Aligned_cols=103 Identities=50% Similarity=0.712 Sum_probs=101.1
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhH
Q 002118 852 PSAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEE 931 (964)
Q Consensus 852 pS~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEe 931 (964)
.++|+++||++|||++++|+++++|+++|+.|++|||+||.++++++...++++.|+.++++|++||+|+|+|||||+|+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ 97 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEE 97 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 002118 932 LEELRADIMDLKEMYREQVNLLV 954 (964)
Q Consensus 932 VEELraDL~DVKeMYR~QID~LL 954 (964)
|||||+||+|||+|||.||++||
T Consensus 98 veEL~~Dv~DlK~myr~Qi~~lv 120 (120)
T PF12325_consen 98 VEELRADVQDLKEMYREQIDQLV 120 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999985
No 3
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=99.57 E-value=9.1e-15 Score=130.25 Aligned_cols=69 Identities=46% Similarity=0.592 Sum_probs=61.9
Q ss_pred hHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHh
Q 002118 434 SDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRD 502 (964)
Q Consensus 434 s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~Lk~Kle~e~~k~es~kr~ 502 (964)
+++.++|+|||++|++||+||++||+++++|+++|||||++++++++.+..|+.+++.....++.+..+
T Consensus 1 ~sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 1 SSLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999888777776665543
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.17 E-value=0.00015 Score=95.38 Aligned_cols=41 Identities=29% Similarity=0.367 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHH
Q 002118 903 ILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLK 943 (964)
Q Consensus 903 ~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEELraDL~DVK 943 (964)
....+...+.-|..+|..+++-+.+-..++..|...|.|++
T Consensus 1464 e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~ 1504 (1930)
T KOG0161|consen 1464 ELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLE 1504 (1930)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666777778888888877777777777777777763
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=99.08 E-value=0.00019 Score=89.21 Aligned_cols=74 Identities=16% Similarity=0.176 Sum_probs=57.5
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH---HHHHhc
Q 002118 853 SAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSA---ALELMG 926 (964)
Q Consensus 853 S~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~T---lLEMlG 926 (964)
..+..-+.++...+..+...+..+...++.+..+|-.+....+.+.....++..++..+..|..+|+. +..+|+
T Consensus 649 e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~~~~ 725 (880)
T PRK02224 649 EEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALEALYDEAEELESMYG 725 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777888888888888888888888888888888888777777788888888888877665 444444
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.03 E-value=0.00047 Score=89.69 Aligned_cols=69 Identities=9% Similarity=0.065 Sum_probs=38.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhh---------hhhHHHHHHHHHHHHHHHH
Q 002118 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKM--TAQCEKLRAEAAI---------LPGIQAELDALRRRHSAAL 922 (964)
Q Consensus 854 ~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~L--t~e~Eelr~~~~~---------v~~Le~el~eLqqRY~TlL 922 (964)
.+++.+..+..++..+..+|..++..+..+...|-.+ ..++.++...+.. .+.+..++.+|..+|+.+-
T Consensus 988 ~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~ 1067 (1311)
T TIGR00606 988 ECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIK 1067 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666667777777776666666666 4444444433321 2444455555555554444
No 7
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.80 E-value=0.0012 Score=78.77 Aligned_cols=282 Identities=25% Similarity=0.232 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHh---HHHHHHHhHHHHHHhHHHHHHH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHH-HH--
Q 002118 473 AQIRELEEEKKGLVT---KLQVEENKVESIKRDKTATEKL-------LQETIEKHQVELGEQKDYYTNALAAAKE-AE-- 539 (964)
Q Consensus 473 akikE~Eee~~~Lk~---Kle~e~~k~es~kr~~~a~EK~-------lqe~iek~q~eL~aqk~~~~~~L~aAke-~e-- 539 (964)
-.++|-.+.|..|.. |+.+..-+..++-+...|..|. ..+.|.+++.++..++..+..+-..-|- ++
T Consensus 446 DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I 525 (961)
T KOG4673|consen 446 DELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETI 525 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345566666666653 5555444334433333343332 3345666666666655444321110000 00
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 002118 540 --ELAEARANNEARAELESRLREAGERETMLVQALEELRQTLS---RTE-QQAVFREDMLRRDIEDLQRRYQASE---RR 610 (964)
Q Consensus 540 --~lAE~ra~~Ea~~~Le~~lkEaeEre~~L~qqIedLRe~Le---Rae-q~a~~rEeeLR~Eis~Le~RLEeaE---sR 610 (964)
.-|+.....+-...+.....+++.+-..++...+.++-.|. |++ ..++.++..|-..+.+|...|+-.| +|
T Consensus 526 ~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aar 605 (961)
T KOG4673|consen 526 EKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAAR 605 (961)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01222222222222223333444444456666777776553 333 2455566777777777777666422 12
Q ss_pred HH-HHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHH--
Q 002118 611 CE-ELVTQVPESTRPLLRQIEAIQETTARRAEAWAAV-------ERSLNLRLQEAEAKAA---ASEER-ERSVNERLS-- 676 (964)
Q Consensus 611 aE-ELSssv~eATrPLLRQIEtLQaQ~asqsenWe~i-------E~sL~~RLaeaE~~l~---~A~eR-Er~~~ekl~-- 676 (964)
-| .+.- -|+.||.-|-.+-.--+.+ =+-|...|.+++..+. .+-+| |+.++++|.
T Consensus 606 rEd~~R~-----------Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dS 674 (961)
T KOG4673|consen 606 REDMFRG-----------EIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDS 674 (961)
T ss_pred HHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhH
Confidence 22 2222 3444554444332222222 2346777777776444 44456 789999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 677 QTLSRINVLEAQISCLRAEQTQLT-------KSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQEL 749 (964)
Q Consensus 677 e~~~ri~~LE~els~lR~e~~~Lq-------~qLE~Er~r~~~~r~e~~aakeE~~~le~r~~qLEeeL~elr~k~~~el 749 (964)
.+..|+..++++-. ++++-.+. .++---|+.....+..+...+..+..++..+..+++++.+++.++.+-.
T Consensus 675 Qtllr~~v~~eqge--kqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le 752 (961)
T KOG4673|consen 675 QTLLRINVLEEQGE--KQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLE 752 (961)
T ss_pred HHHHHHHHHHHhhh--HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888887432 12211111 1111111111223333445556667777788889999999988887755
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002118 750 QEALMHRELLQQEIEREK 767 (964)
Q Consensus 750 qea~~~~e~lqq~lE~Ek 767 (964)
.+....+..+.+++++..
T Consensus 753 ~e~r~~k~~~~q~lq~~l 770 (961)
T KOG4673|consen 753 VEIRELKRKHKQELQEVL 770 (961)
T ss_pred HHHHHHHHHHHHHhhHHH
Confidence 555555555556665553
No 8
>PRK02224 chromosome segregation protein; Provisional
Probab=98.76 E-value=0.0023 Score=79.76 Aligned_cols=109 Identities=21% Similarity=0.322 Sum_probs=45.8
Q ss_pred HHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHH
Q 002118 373 AKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMA 452 (964)
Q Consensus 373 A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KErD~Lrke~ak~s~~~a~LkEKDEqIaqLme 452 (964)
..+..+.+.|+.+|..... .++.......-.+|+.++..+..+..+...++++..........+..+-..|..|..
T Consensus 183 ~~~~~~~~~~~~~l~~~~~----~~l~~~l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~~l~~l~~ 258 (880)
T PRK02224 183 SDQRGSLDQLKAQIEEKEE----KDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEA 258 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554211 223333334444555555555544444444444443332222333333344444444
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 453 EGEELSKKQAAQEAQIRKLRAQIRELEEEKKGL 485 (964)
Q Consensus 453 EGEKLSKkELq~sniIKKLRakikE~Eee~~~L 485 (964)
+=+.|-.+--..+..+..++.++.+++..+..+
T Consensus 259 ~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~l 291 (880)
T PRK02224 259 EIEDLRETIAETEREREELAEEVRDLRERLEEL 291 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444433333
No 9
>PRK03918 chromosome segregation protein; Provisional
Probab=98.62 E-value=0.0055 Score=76.21 Aligned_cols=46 Identities=22% Similarity=0.284 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 002118 872 RLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRR 917 (964)
Q Consensus 872 ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqR 917 (964)
++..+....+.+...|-.+..+.+.++....++.....++..++..
T Consensus 674 ~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~l~~~ 719 (880)
T PRK03918 674 ELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKA 719 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444433444444444444433
No 10
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.60 E-value=0.0091 Score=78.04 Aligned_cols=140 Identities=16% Similarity=0.233 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHH
Q 002118 568 LVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQV--PESTRPLLRQIEAIQETTARRAEAWAA 645 (964)
Q Consensus 568 L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv--~eATrPLLRQIEtLQaQ~asqsenWe~ 645 (964)
|...+.++...|......+ ....+..+|......+..++...+.|...+ ......+.-++.-++..+......+..
T Consensus 476 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 553 (1311)
T TIGR00606 476 LDQELRKAERELSKAEKNS--LTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRK 553 (1311)
T ss_pred HHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433322 233444444444444444444444444332 123444555677777777777777777
Q ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 646 VERSLNLRLQEA----------EAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQR 709 (964)
Q Consensus 646 iE~sL~~RLaea----------E~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er~r 709 (964)
+-.....++..+ +..+......=..++++...+...+..++..+..++.++..+..+|+.+..+
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~ 627 (1311)
T TIGR00606 554 IKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDK 627 (1311)
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766665555443 3333333333334455555555556666666666666666666666655433
No 11
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.56 E-value=0.0023 Score=70.42 Aligned_cols=117 Identities=26% Similarity=0.359 Sum_probs=90.6
Q ss_pred chHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 623 RPLLRQIEAIQETTA-RRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTK 701 (964)
Q Consensus 623 rPLLRQIEtLQaQ~a-sqsenWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~ 701 (964)
..|=.-|..++.+|. ....+|+.+|..+..++.++..........-..++..+..+...+..|..++..++.....|..
T Consensus 165 ~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~ 244 (312)
T PF00038_consen 165 SDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLER 244 (312)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhh
Confidence 346666788889987 5679999999999999999999888877777788888999999999999999999988888877
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 702 SLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQEL 749 (964)
Q Consensus 702 qLE~Er~r~~~~r~e~~aakeE~~~le~r~~qLEeeL~elr~k~~~el 749 (964)
.|..-..+.. .+...++..+..++.+|..++..+...+
T Consensus 245 ~l~~le~~~~----------~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 245 QLRELEQRLD----------EEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH----------HHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 7764332222 3445556667788888888887776544
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.47 E-value=0.014 Score=73.76 Aligned_cols=12 Identities=58% Similarity=0.861 Sum_probs=4.6
Q ss_pred HHHHHHHhHHHH
Q 002118 931 ELEELRADIMDL 942 (964)
Q Consensus 931 eVEELraDL~DV 942 (964)
++..|+..+.++
T Consensus 916 ~l~~l~~~~~~~ 927 (1179)
T TIGR02168 916 ELEELREKLAQL 927 (1179)
T ss_pred HHHHHHHHHHHH
Confidence 333344333333
No 13
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.46 E-value=0.024 Score=75.63 Aligned_cols=93 Identities=22% Similarity=0.317 Sum_probs=57.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHhccchhHHHH
Q 002118 859 LRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGI----QAELDALRRRHSAALELMGERDEELEE 934 (964)
Q Consensus 859 LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~L----e~el~eLqqRY~TlLEMlGEKsEeVEE 934 (964)
|...+-.+-.+......|+.+|..|..|+..++-.++..+..+..+... .+.+.+..++++-+...++.-.-+...
T Consensus 1388 lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~ 1467 (1930)
T KOG0161|consen 1388 LQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQ 1467 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455556677788888888888888888777776665444333 333455666666666666655555555
Q ss_pred HHHhHHHHHHHHHHHHH
Q 002118 935 LRADIMDLKEMYREQVN 951 (964)
Q Consensus 935 LraDL~DVKeMYR~QID 951 (964)
+..++.-++.-|++.++
T Consensus 1468 ~~tel~kl~~~lee~~e 1484 (1930)
T KOG0161|consen 1468 LSTELQKLKNALEELLE 1484 (1930)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 56666666665555554
No 14
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.43 E-value=0.022 Score=73.95 Aligned_cols=64 Identities=30% Similarity=0.424 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 641 EAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLE 704 (964)
Q Consensus 641 enWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE 704 (964)
..|..-|..|..++..++..+..+..+...+.+.+.....++..+..++..++.+..+...+++
T Consensus 596 pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1201)
T PF12128_consen 596 PDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQ 659 (1201)
T ss_pred chhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3466667777777777777777777766666666666666666666666666555555544444
No 15
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.39 E-value=0.021 Score=72.19 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=16.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEK 896 (964)
Q Consensus 857 A~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Ee 896 (964)
..+..+..++..++.++..+...+..+..++..+..+...
T Consensus 866 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 905 (1179)
T TIGR02168 866 ELIEELESELEALLNERASLEEALALLRSELEELSEELRE 905 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444443333
No 16
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.24 E-value=0.064 Score=70.98 Aligned_cols=297 Identities=21% Similarity=0.252 Sum_probs=157.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 340 SVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYAL 419 (964)
Q Consensus 340 ~~~e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L 419 (964)
...|++.|+.+=.+|-..-...-+.+.+++.+.-.|+..+.+|+.....+... ....+.-|-+||..|++-|+.|
T Consensus 743 le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s-----~~~~k~~~e~~i~eL~~el~~l 817 (1822)
T KOG4674|consen 743 LEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEES-----EMATKDKCESRIKELERELQKL 817 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888777777766665556777788888888888888888777655442 2345777788888888888777
Q ss_pred HHHHHHHHHHHh-hhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh--H
Q 002118 420 TKERDTLRREQN-KKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENK--V 496 (964)
Q Consensus 420 ~KErD~Lrke~a-k~s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~Lk~Kle~e~~k--~ 496 (964)
.+....-...+. -..+...-|..=--+|..++.+-.+|...---.++.|-+|-.++.++++.++....+.....+. .
T Consensus 818 k~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~ 897 (1822)
T KOG4674|consen 818 KKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSN 897 (1822)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchh
Confidence 666431111111 0112223444445566677777777777666777778888888888888777766533322211 1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHh-------hhHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 002118 497 ESIKRDKTATEKLLQETIEKHQVELG-------EQKDYYT---NALAAAKEAEELAEARANNEARA-ELESRLREAGERE 565 (964)
Q Consensus 497 es~kr~~~a~EK~lqe~iek~q~eL~-------aqk~~~~---~~L~aAke~e~lAE~ra~~Ea~~-~Le~~lkEaeEre 565 (964)
.+.......+.+ ..+.+..++..|. ..+..|. ..|..-+ ..+.+.+-+.++.- .+...+..++.+.
T Consensus 898 ~d~~~~~~~Lr~-~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~k--s~lde~~~~~ea~ie~~~~k~tslE~~l 974 (1822)
T KOG4674|consen 898 EDATILEDTLRK-ELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVK--SELDETRLELEAKIESLHKKITSLEEEL 974 (1822)
T ss_pred hhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 111000001110 1122222222222 1111111 1111111 11223332222211 1222333333343
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHH
Q 002118 566 TMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAA 645 (964)
Q Consensus 566 ~~L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~ 645 (964)
..|..++..|+..+..+-.--..+=..|.++++.|+.-+...+....++-. +|.++|.++......|..
T Consensus 975 s~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~-----------~~~~~k~dl~~~~~~~~~ 1043 (1822)
T KOG4674|consen 975 SELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANE-----------QIEDLQNDLKTETEQLRK 1043 (1822)
T ss_pred HHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence 455666666666665544444444455556666666655555555444433 677777777777777777
Q ss_pred HHHHHHHHHH
Q 002118 646 VERSLNLRLQ 655 (964)
Q Consensus 646 iE~sL~~RLa 655 (964)
.....-..+.
T Consensus 1044 a~~~Ye~el~ 1053 (1822)
T KOG4674|consen 1044 AQSKYESELV 1053 (1822)
T ss_pred HHHHHHHHHH
Confidence 7666655444
No 17
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.03 E-value=0.11 Score=65.73 Aligned_cols=67 Identities=19% Similarity=0.331 Sum_probs=48.9
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 362 ARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRRE 429 (964)
Q Consensus 362 ~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KErD~Lrke 429 (964)
.+.|.++.++.-.|....-+|+.+++.++...-...+++++.-| ++...+++.+-..+++.+++..+
T Consensus 1266 ~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~~~~r~a~-~~s~ea~~r~~~s~~~l~s~~~~ 1332 (1758)
T KOG0994|consen 1266 GKDLESLQREFNGLLTTYKELREQLEKIKESDILGAFNSTRHAY-EQSAEAERRVDASSRELASLVDQ 1332 (1758)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHH-HHHHHHHHhhhhhhhcccchhhh
Confidence 46677777788888888888888888888877667777666655 55666678787777777655443
No 18
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.92 E-value=0.14 Score=63.29 Aligned_cols=269 Identities=20% Similarity=0.265 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 002118 670 SVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKEL---RRKHK 746 (964)
Q Consensus 670 ~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er~r~~~~r~e~~aakeE~~~le~r~~qLEeeL~el---r~k~~ 746 (964)
.+++.+++.+.|=.++=..++.+..++-.|++++-.-| .+.-+|...|.++..++..+..|..+++++ |.=.+
T Consensus 80 ~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk----~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae 155 (717)
T PF09730_consen 80 RLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLK----QSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAE 155 (717)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667776767777777777777788888777654 455678888888888777776666666554 22223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhccccCCCcccccccccccCCcc---ccCCCCCCCCCchhhhhhcc
Q 002118 747 QELQEALMHRELLQQEIEREKTARVDLERRASAESAAVSEKTPIARHTSAFENGSLS---RKLSSASSLGSMEESHFLQA 823 (964)
Q Consensus 747 ~elqea~~~~e~lqq~lE~Ek~~r~elE~~~~~~s~~~s~q~~~~~~~s~~~~~s~t---r~lSs~sSigs~~~s~~lQ~ 823 (964)
+++.+|. +.|+.+.+...+.+.++....... +.. ....+...+.+.+.. +....|..-++...+++...
T Consensus 156 ~qleEAL---esl~~EReqk~~LrkEL~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 227 (717)
T PF09730_consen 156 KQLEEAL---ESLKSEREQKNALRKELDQHLNIE--SIS---YLSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGG 227 (717)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHhcCcc--ccc---cccchhhcccccccccccccccCCCCchhhhcchhhcc
Confidence 4666665 245555555444444443311110 000 000000000000000 00000100000000000000
Q ss_pred c-cC--CCC-ccccC-----CCCCCCCCCcccccCCCh---hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 824 S-LD--SSD-SLSDR-----KNTVEPTMSPYYVKSMTP---SAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMT 891 (964)
Q Consensus 824 s-~d--~sd-~~s~~-----~~~g~~~~S~~~~~s~tp---S~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt 891 (964)
+ .. ..+ ..+.+ .+|++.-.+.+ |.-+.. -.|..+|-|.|.|.++|..-|.-.+.+-+....+|...+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~p~~~lv~DL-fSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~ 306 (717)
T PF09730_consen 228 PGLAKGNGDNRMSTPRKSESFSPAPSLVSDL-FSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQ 306 (717)
T ss_pred chhcccccccccCCCCCCCCCCCCCcccchh-hhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 000 00100 01111001111 111111 268899999999999999999988888888888888777
Q ss_pred HHHHHHHHHHhhhhhHHHH----------------------------HHHHHHHHHHHHHHhccchhHHHHHHHhHHHHH
Q 002118 892 AQCEKLRAEAAILPGIQAE----------------------------LDALRRRHSAALELMGERDEELEELRADIMDLK 943 (964)
Q Consensus 892 ~e~Eelr~~~~~v~~Le~e----------------------------l~eLqqRY~TlLEMlGEKsEeVEELraDL~DVK 943 (964)
.++..|.+.+.-+..+... +.=|+.||..+..=++.--.++..|+..+...+
T Consensus 307 eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~ 386 (717)
T PF09730_consen 307 EKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELE 386 (717)
T ss_pred HHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666555543110 233568888777666666666666666665556
Q ss_pred HHHHHHHH
Q 002118 944 EMYREQVN 951 (964)
Q Consensus 944 eMYR~QID 951 (964)
.-|+...+
T Consensus 387 ~~~~~ek~ 394 (717)
T PF09730_consen 387 ERYKQEKD 394 (717)
T ss_pred HHHHHHHH
Confidence 66655443
No 19
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.89 E-value=0.12 Score=61.96 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 348 KREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLR 427 (964)
Q Consensus 348 ~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KErD~Lr 427 (964)
+++|..|+--|- .-=+.|-.|..+|--|..+|..|+..-. .+...++.=|---|..+=+-|-...++|..+.
T Consensus 41 K~El~~LNDRLA-------~YIekVR~LEaqN~~L~~di~~lr~~~~-~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e 112 (546)
T KOG0977|consen 41 KKELQELNDRLA-------VYIEKVRFLEAQNRKLEHDINLLRGVVG-RETSGIKAKYEAELATARKLLDETARERAKLE 112 (546)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCcchhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 467777776654 3456777889999999999999988652 55567788888888888777777777777776
Q ss_pred HHHhhhh
Q 002118 428 REQNKKS 434 (964)
Q Consensus 428 ke~ak~s 434 (964)
.++.+..
T Consensus 113 ~ei~kl~ 119 (546)
T KOG0977|consen 113 IEITKLR 119 (546)
T ss_pred HHHHHhH
Confidence 6665543
No 20
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.74 E-value=0.1 Score=56.27 Aligned_cols=84 Identities=24% Similarity=0.343 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHH
Q 002118 551 RAELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIE 630 (964)
Q Consensus 551 ~~~Le~~lkEaeEre~~L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIE 630 (964)
+..++.+...-.++...|..++...+..+..+..+ =++.-.-+..++..|+.++.|++.+-+ .|.
T Consensus 80 ~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k----~~E~~rkl~~~E~~Le~aEeR~e~~E~-----------ki~ 144 (237)
T PF00261_consen 80 RKVLENREQSDEERIEELEQQLKEAKRRAEEAERK----YEEVERKLKVLEQELERAEERAEAAES-----------KIK 144 (237)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH----HHHCHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhch-----------hHH
Confidence 34455555555556556666666666555444322 223334445566666666666666655 556
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002118 631 AIQETTARRAEAWAAVERS 649 (964)
Q Consensus 631 tLQaQ~asqsenWe~iE~s 649 (964)
.|+..+..-..++..+|.+
T Consensus 145 eLE~el~~~~~~lk~lE~~ 163 (237)
T PF00261_consen 145 ELEEELKSVGNNLKSLEAS 163 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 6666666555555444433
No 21
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.71 E-value=0.27 Score=60.41 Aligned_cols=106 Identities=16% Similarity=0.215 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 592 MLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSV 671 (964)
Q Consensus 592 eLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eREr~~ 671 (964)
+++.++..|.+---.+-.+.+++..=+-.+-.+|-|||-.+|-.+-.+.-+-+| |..++.++|++++.+...-|.+
T Consensus 295 ~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~eg----fddk~~eLEKkrd~al~dvr~i 370 (1265)
T KOG0976|consen 295 ELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEG----FDDKLNELEKKRDMALMDVRSI 370 (1265)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHhHHHH
Confidence 344444444443333444455555545556677889999999999888887776 5677899999999888876666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 672 NERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQ 708 (964)
Q Consensus 672 ~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er~ 708 (964)
+++... .+.++..+...+..++.+++..+.
T Consensus 371 ~e~k~n-------ve~elqsL~~l~aerqeQidelKn 400 (1265)
T KOG0976|consen 371 QEKKEN-------VEEELQSLLELQAERQEQIDELKN 400 (1265)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665433 344455555444555555444333
No 22
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.69 E-value=0.037 Score=59.64 Aligned_cols=72 Identities=26% Similarity=0.428 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 581 RTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQE 656 (964)
Q Consensus 581 Raeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLae 656 (964)
-....+..+++.+...|..|..+|..++.|++.+-..+. +|=++|..|...+.........+...|-.=|.+
T Consensus 162 ~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~----~Le~~id~le~eL~~~k~~~~~~~~eld~~l~e 233 (237)
T PF00261_consen 162 ASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVK----KLEKEIDRLEDELEKEKEKYKKVQEELDQTLNE 233 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667788999999999999999999999999998654 678888888888888888877777777555544
No 23
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.64 E-value=0.5 Score=61.63 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=21.2
Q ss_pred HHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002118 439 LLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEE 480 (964)
Q Consensus 439 ~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Ee 480 (964)
.+.+.+..|..+...=..+-.........++++..++.....
T Consensus 296 ~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1163)
T COG1196 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKE 337 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555444444444444444444333
No 24
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.62 E-value=0.63 Score=62.19 Aligned_cols=74 Identities=22% Similarity=0.286 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 002118 567 MLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRA 640 (964)
Q Consensus 567 ~L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqs 640 (964)
.|+.-+..|+....-.+.--......+...|..|..-|+.+....++-++-+-+.|..+=+|++..|.+...-.
T Consensus 777 ~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~ 850 (1822)
T KOG4674|consen 777 SLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELE 850 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 44444455544444444444444455556666666666666666666666555666666677777777665543
No 25
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.57 E-value=0.63 Score=60.99 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 396 AELETLREEYHQRVATLERKVYALTKERDTLR 427 (964)
Q Consensus 396 ~~~~~L~eEy~qRI~ALErKlQ~L~KErD~Lr 427 (964)
..+..++++|..+++++...+.....+.+.+.
T Consensus 302 ~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~ 333 (1201)
T PF12128_consen 302 DEIKELRDELNKELSALNADLARIKSELDEIE 333 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888877777777553
No 26
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.47 E-value=0.73 Score=59.19 Aligned_cols=63 Identities=21% Similarity=0.197 Sum_probs=35.6
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 367 AKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQ 430 (964)
Q Consensus 367 ~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KErD~Lrke~ 430 (964)
.+....++|.+....|+.+...|++.. .+=...-..+|.++++..+.+.+-|.++.-+++.+.
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~~~q-~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eel 524 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQREQ-KALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEEL 524 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777666511 011111234455677777777666666555554443
No 27
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.46 E-value=0.61 Score=58.19 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 568 LVQALEELRQTLSR---TEQQAVFREDMLRRDIEDLQRRYQASERRCEELV 615 (964)
Q Consensus 568 L~qqIedLRe~LeR---aeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELS 615 (964)
++..+.|+...++- ..+.|..|-+.|..|+..+..|++++++-.|=|.
T Consensus 302 ~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILK 352 (1243)
T KOG0971|consen 302 YKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILK 352 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555443 3455666667788888888888888777665444
No 28
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.46 E-value=0.72 Score=58.96 Aligned_cols=16 Identities=13% Similarity=0.410 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 002118 906 GIQAELDALRRRHSAA 921 (964)
Q Consensus 906 ~Le~el~eLqqRY~Tl 921 (964)
.++.++.+++.++..+
T Consensus 879 ~l~~~l~~l~~~~~~l 894 (1164)
T TIGR02169 879 DLESRLGDLKKERDEL 894 (1164)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 29
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.40 E-value=3.6e-05 Score=95.87 Aligned_cols=101 Identities=19% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hhhhhHHHHHHHHHHHHHHHHHH
Q 002118 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEA------------AILPGIQAELDALRRRHSAALEL 924 (964)
Q Consensus 857 A~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~------------~~v~~Le~el~eLqqRY~TlLEM 924 (964)
+.+-++-.|+..-|.-...++..|..|-..|-.|..+++++.... .+|..|+.+|..=+.||..+.-.
T Consensus 693 ~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~ 772 (859)
T PF01576_consen 693 AQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESEQRRRAEAQKQ 772 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444456666666666666677766666666666666665533 35667777777777888888888
Q ss_pred hccchhHHHHHHHhHHHHHH---HHHHHHHHHHhhc
Q 002118 925 MGERDEELEELRADIMDLKE---MYREQVNLLVNKV 957 (964)
Q Consensus 925 lGEKsEeVEELraDL~DVKe---MYR~QID~LLkQi 957 (964)
+---.-.|-||...+.+=+. -|+.+|+.+-..|
T Consensus 773 ~rk~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~ 808 (859)
T PF01576_consen 773 LRKLERRVKELQFQVEEERKNAERLQDLVDKLQLKL 808 (859)
T ss_dssp ------------------------------------
T ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 88888888999988888774 5667777665554
No 30
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.40 E-value=0.37 Score=54.18 Aligned_cols=132 Identities=24% Similarity=0.363 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 345 EKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERD 424 (964)
Q Consensus 345 ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KErD 424 (964)
+-|..+|..|.+..---...+...--..+.|.+.|..|+..-..+..+. +. -+||+- -.|=+||+.|.++.+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~a-Eq-----EEE~is--N~LlKkl~~l~keKe 94 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKA-EQ-----EEEFIS--NTLLKKLQQLKKEKE 94 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHH--HHHHHHHHHHHHHHH
Confidence 6666777777664332233444444556667777777776665555543 12 356653 356677777777777
Q ss_pred HHHHHHhhhhH-HHHHHhhHHHHHHHHHHHhHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002118 425 TLRREQNKKSD-AAALLKEKDEIINQVMAEGEELSKK-QAAQEAQIRKLRAQIRELEEEKKGLVT 487 (964)
Q Consensus 425 ~Lrke~ak~s~-~~a~LkEKDEqIaqLmeEGEKLSKk-ELq~sniIKKLRakikE~Eee~~~Lk~ 487 (964)
.|-..+.+... +...|-- +|.+|+.|--.|-.+ +..++..|-||+.+|..++.+...+..
T Consensus 95 ~L~~~~e~EEE~ltn~L~r---kl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~ 156 (310)
T PF09755_consen 95 TLALKYEQEEEFLTNDLSR---KLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQE 156 (310)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 76554443211 1111111 233333333333322 233556677777777777766544443
No 31
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.39 E-value=0.89 Score=58.28 Aligned_cols=83 Identities=19% Similarity=0.337 Sum_probs=54.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 002118 858 ILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRA 937 (964)
Q Consensus 858 ~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEELra 937 (964)
.++--++-++.++..+.++++.+..+..|+-.|+...- +++.-..+++.+|..+.+.+-|--+....|+.
T Consensus 929 ~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~----------~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~ 998 (1293)
T KOG0996|consen 929 AIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELK----------GLEEKAAELEKEYKEAEESLKEIKKELRDLKS 998 (1293)
T ss_pred HHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445566777777777777777777777765433 33444455777777777777777777777777
Q ss_pred hHHHHHHHHHHHH
Q 002118 938 DIMDLKEMYREQV 950 (964)
Q Consensus 938 DL~DVKeMYR~QI 950 (964)
++.+++.+|-.+-
T Consensus 999 ~~e~i~k~~~~lk 1011 (1293)
T KOG0996|consen 999 ELENIKKSENELK 1011 (1293)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777765543
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.39 E-value=0.59 Score=56.22 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHH
Q 002118 729 GRANQLEEEIKEL 741 (964)
Q Consensus 729 ~r~~qLEeeL~el 741 (964)
.-+.+|+..|..+
T Consensus 445 ~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 445 EYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHh
Confidence 3355666666655
No 33
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.35 E-value=0.85 Score=57.20 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHH
Q 002118 914 LRRRHSAALELMGERDEELEELRADIMDLKEMYREQV 950 (964)
Q Consensus 914 LqqRY~TlLEMlGEKsEeVEELraDL~DVKeMYR~QI 950 (964)
+..|+..+=.-.....+++..-+.+|.=+-.|.+...
T Consensus 546 ~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E 582 (775)
T PF10174_consen 546 LRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAE 582 (775)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555555555554443
No 34
>PRK03918 chromosome segregation protein; Provisional
Probab=97.34 E-value=0.86 Score=57.18 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 592 MLRRDIEDLQRRYQASERRCEELV 615 (964)
Q Consensus 592 eLR~Eis~Le~RLEeaEsRaEELS 615 (964)
.++.++..+..++..++...+.+.
T Consensus 409 ~l~~~~~~~~~~i~eL~~~l~~L~ 432 (880)
T PRK03918 409 KITARIGELKKEIKELKKAIEELK 432 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 35
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.31 E-value=1.2 Score=58.18 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhc
Q 002118 344 LEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKR 391 (964)
Q Consensus 344 ~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~ 391 (964)
+-+..++....+..|+....-+..+.+-+.+|..+.+.|+.+.+.+.+
T Consensus 167 v~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~ 214 (1163)
T COG1196 167 VSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAER 214 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555455555555555555555555555544333
No 36
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.27 E-value=1 Score=56.51 Aligned_cols=36 Identities=33% Similarity=0.504 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhH
Q 002118 904 LPGIQAELDALRRRHSAALELMGERDEELEELRADI 939 (964)
Q Consensus 904 v~~Le~el~eLqqRY~TlLEMlGEKsEeVEELraDL 939 (964)
+..++.++..|.-+...+-+||+++.-.+.-|+++.
T Consensus 673 l~k~~~Eld~l~~qL~ssq~~L~e~d~~L~~le~Er 708 (775)
T PF10174_consen 673 LEKLRQELDQLKAQLESSQQSLMERDQELNALEAER 708 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455666777777788888889999988887777664
No 37
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.18 E-value=0.57 Score=51.81 Aligned_cols=87 Identities=15% Similarity=0.290 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002118 647 ERSLNLRLQEAEAKAAASEER-----ERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAK 721 (964)
Q Consensus 647 E~sL~~RLaeaE~~l~~A~eR-----Er~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er~r~~~~r~e~~aak 721 (964)
...|..-|.++..+-+....+ +.-...++..+...+......+..++.++..+...+..-.
T Consensus 164 ~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~-------------- 229 (312)
T PF00038_consen 164 SSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQ-------------- 229 (312)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred cccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhh--------------
Confidence 334555566655554433332 2333445555555555555555555555555555444322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 722 EEADTQEGRANQLEEEIKELRRKHKQ 747 (964)
Q Consensus 722 eE~~~le~r~~qLEeeL~elr~k~~~ 747 (964)
.++..++.++..|+..|.+++..+..
T Consensus 230 ~el~~l~~~~~~Le~~l~~le~~~~~ 255 (312)
T PF00038_consen 230 AELESLRAKNASLERQLRELEQRLDE 255 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccchhhhhhhHHHHHHHHHH
Confidence 34444455555555555555555544
No 38
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.17 E-value=1.5 Score=56.51 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=21.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhcc
Q 002118 901 AAILPGIQAELDALRRRHSAALELMGE 927 (964)
Q Consensus 901 ~~~v~~Le~el~eLqqRY~TlLEMlGE 927 (964)
+..+.+++.-+..+.-||+..++|+-.
T Consensus 1023 v~~L~qlr~~l~k~~l~~q~~~d~~~~ 1049 (1317)
T KOG0612|consen 1023 VMELSQLRTKLNKLRLKNQKELDLQAQ 1049 (1317)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 566777777788888888888888877
No 39
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.14 E-value=1.3 Score=55.14 Aligned_cols=81 Identities=20% Similarity=0.373 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-----h-HHHHHHh-hHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002118 407 QRVATLERKVYALTKERDTLRREQNKK-----S-DAAALLK-EKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELE 479 (964)
Q Consensus 407 qRI~ALErKlQ~L~KErD~Lrke~ak~-----s-~~~a~Lk-EKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~E 479 (964)
+=|.+||+||....+-|..+-+++... . ...+.-+ -.---+.. +-|+-+=....++++-||+||..++..|
T Consensus 488 q~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~--e~~e~~r~r~~~lE~E~~~lr~elk~ke 565 (697)
T PF09726_consen 488 QSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQ--ECAESCRQRRRQLESELKKLRRELKQKE 565 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999988877777665554311 0 0000000 00000001 4455555556677788888888888888
Q ss_pred HHHHHHHhHH
Q 002118 480 EEKKGLVTKL 489 (964)
Q Consensus 480 ee~~~Lk~Kl 489 (964)
+++..|...+
T Consensus 566 e~~~~~e~~~ 575 (697)
T PF09726_consen 566 EQIRELESEL 575 (697)
T ss_pred HHHHHHHHHH
Confidence 7777775443
No 40
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.09 E-value=0.82 Score=56.80 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 002118 463 AQEAQIRKLRAQIREL 478 (964)
Q Consensus 463 q~sniIKKLRakikE~ 478 (964)
.++.-|||||+.+.-.
T Consensus 422 rLE~dvkkLraeLq~~ 437 (697)
T PF09726_consen 422 RLEADVKKLRAELQSS 437 (697)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5777788888776543
No 41
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.05 E-value=1.8 Score=55.34 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=23.4
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 002118 432 KKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLR 472 (964)
Q Consensus 432 k~s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLR 472 (964)
+...+...|.++..+|..++.|+..-...-......++.+|
T Consensus 310 k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~ 350 (1074)
T KOG0250|consen 310 KIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLR 350 (1074)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 44455557777777777777777765554433333333333
No 42
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.98 E-value=1.5 Score=53.15 Aligned_cols=18 Identities=17% Similarity=0.516 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 002118 599 DLQRRYQASERRCEELVT 616 (964)
Q Consensus 599 ~Le~RLEeaEsRaEELSs 616 (964)
.++.++..++.+...+..
T Consensus 352 ~lekeL~~Le~~~~~~~~ 369 (569)
T PRK04778 352 QLEKQLESLEKQYDEITE 369 (569)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 43
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.86 E-value=2.6 Score=54.13 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 627 RQIEAIQETTARRAEAWAAVERSLNL 652 (964)
Q Consensus 627 RQIEtLQaQ~asqsenWe~iE~sL~~ 652 (964)
.||++|-.+...+-++-..++.-|..
T Consensus 1511 eqi~~L~~~I~e~v~sL~nVd~IL~~ 1536 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSR 1536 (1758)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHh
Confidence 58999999998888888888887753
No 44
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.74 E-value=0.00037 Score=87.14 Aligned_cols=110 Identities=25% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 346 KLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDT 425 (964)
Q Consensus 346 kl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KErD~ 425 (964)
||.++|..++..++.+.....++.+-+.+|+..++.|..+++..+... ..++-=.--|-.-|+.+..++..+.-++|.
T Consensus 325 kL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~--~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~ 402 (859)
T PF01576_consen 325 KLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAA--AELEKKQRKFDKQLAEWKAKVEELQAERDA 402 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888777777777777788888888877777665543 223233344555555555665555556665
Q ss_pred HHHHHhhh-hH---HHHHHhhHHHHHHHHHHHhHHh
Q 002118 426 LRREQNKK-SD---AAALLKEKDEIINQVMAEGEEL 457 (964)
Q Consensus 426 Lrke~ak~-s~---~~a~LkEKDEqIaqLmeEGEKL 457 (964)
+.++.... +. +...+.+..+.+..|..+-..|
T Consensus 403 ~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L 438 (859)
T PF01576_consen 403 AQREARELETELFKLKNELEELQEQLEELERENKQL 438 (859)
T ss_dssp ------------------------------------
T ss_pred HHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 54433211 11 2234445555555555444444
No 45
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.73 E-value=3.3 Score=53.46 Aligned_cols=89 Identities=24% Similarity=0.321 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002118 402 REEYHQRVATLERKVYALTKERDTLRREQN-KKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEE 480 (964)
Q Consensus 402 ~eEy~qRI~ALErKlQ~L~KErD~Lrke~a-k~s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Ee 480 (964)
+..|..-|..+.+.|-.|...+..-..-.. ......++=..|++-|.-|+.|-+-+=++-.....+|=-.|++|....+
T Consensus 262 T~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~ 341 (1293)
T KOG0996|consen 262 TNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQE 341 (1293)
T ss_pred ccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544431100000 0011223445677888888888888766655555566567777777777
Q ss_pred HHHHHHhHHH
Q 002118 481 EKKGLVTKLQ 490 (964)
Q Consensus 481 e~~~Lk~Kle 490 (964)
++..+...+.
T Consensus 342 ~~~~~~e~lk 351 (1293)
T KOG0996|consen 342 ELEKIEEGLK 351 (1293)
T ss_pred HHHHHHhHHH
Confidence 6666655433
No 46
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.54 E-value=0.5 Score=47.73 Aligned_cols=89 Identities=22% Similarity=0.343 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 595 RDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNER 674 (964)
Q Consensus 595 ~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ek 674 (964)
.+|..|+.|+..++...+.+.. ++..++..+......-...| +|+.||.-+|..++.+..+=+...++
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~-----------~l~~~k~~lee~~~~~~~~E-~l~rriq~LEeele~ae~~L~e~~ek 102 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEE-----------QLKEAKEKLEESEKRKSNAE-QLNRRIQLLEEELEEAEKKLKETTEK 102 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhHHHHHHhHH-HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666555 33334444444433334444 89999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002118 675 LSQTLSRINVLEAQISCLRAE 695 (964)
Q Consensus 675 l~e~~~ri~~LE~els~lR~e 695 (964)
++.+..++..++-++..+..+
T Consensus 103 l~e~d~~ae~~eRkv~~le~~ 123 (143)
T PF12718_consen 103 LREADVKAEHFERKVKALEQE 123 (143)
T ss_pred HHHHHHHhHHHHHHHHHHHhh
Confidence 888888888777776554433
No 47
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.47 E-value=4.1 Score=51.34 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=16.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 002118 340 SVCELEKLKREMKMMETALQGA 361 (964)
Q Consensus 340 ~~~e~ekl~~~~~~~~~~l~~~ 361 (964)
|-.+++ |+..++.|+.-|+..
T Consensus 223 skte~e-Lr~QvrdLtEkLetl 243 (1243)
T KOG0971|consen 223 SKTEEE-LRAQVRDLTEKLETL 243 (1243)
T ss_pred ccchHH-HHHHHHHHHHHHHHH
Confidence 444555 999999999999974
No 48
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.44 E-value=3.4 Score=50.02 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=20.2
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 449 QVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLV 486 (964)
Q Consensus 449 qLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~Lk 486 (964)
.|+.+-..+-....+++..|+-|..+..+.++.+..++
T Consensus 210 ~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk 247 (546)
T PF07888_consen 210 SLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLK 247 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555556666666655555555544
No 49
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.41 E-value=0.0098 Score=73.29 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=13.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 002118 931 ELEELRADIMDLKEMYREQVNLL 953 (964)
Q Consensus 931 eVEELraDL~DVKeMYR~QID~L 953 (964)
+|+.+..-..=+|++|...+.+.
T Consensus 614 ~~~~~ekr~~RLkevf~~ks~eF 636 (722)
T PF05557_consen 614 ELASAEKRNQRLKEVFKAKSQEF 636 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455777877777544
No 50
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=4.8 Score=50.09 Aligned_cols=80 Identities=25% Similarity=0.304 Sum_probs=57.9
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHHHHhcc
Q 002118 853 SAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAIL-----PGIQAELDALRRRHSAALELMGE 927 (964)
Q Consensus 853 S~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v-----~~Le~el~eLqqRY~TlLEMlGE 927 (964)
+.|.+..+.++-=+.++++.+-.|+..-..--.||--+-++..+|++.+... ...+.++.-|.+----.|+|.|+
T Consensus 531 s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~lel~~~ 610 (1118)
T KOG1029|consen 531 SELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKALELIGE 610 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677888888888888999999898888888888888888888888765332 12233344444444568999999
Q ss_pred chhHH
Q 002118 928 RDEEL 932 (964)
Q Consensus 928 KsEeV 932 (964)
|..+-
T Consensus 611 ke~e~ 615 (1118)
T KOG1029|consen 611 KEAES 615 (1118)
T ss_pred hhhcc
Confidence 87653
No 51
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.25 E-value=5.7 Score=50.70 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=16.5
Q ss_pred HHHHhHHHHHHHHhHHHHHHHHHHHHhc
Q 002118 364 QAQAKADEIAKMMNENEHLKAVIEDLKR 391 (964)
Q Consensus 364 ~~~~k~~~~A~L~e~N~~L~~~~e~l~~ 391 (964)
++.-|+..+-.|.++.|+|++++..|+-
T Consensus 192 ElEEK~enll~lr~eLddleae~~klrq 219 (1195)
T KOG4643|consen 192 ELEEKFENLLRLRNELDDLEAEISKLRQ 219 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555555666666666666665554
No 52
>PRK11637 AmiB activator; Provisional
Probab=96.13 E-value=3.9 Score=47.73 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 002118 466 AQIRKLRAQIRELEEEKKGLVTKLQ 490 (964)
Q Consensus 466 niIKKLRakikE~Eee~~~Lk~Kle 490 (964)
..|+++..+|..++.++..++.++.
T Consensus 96 ~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 96 NTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 53
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.08 E-value=5 Score=48.41 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=17.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Q 002118 339 DSVCELEKLKREMKMMETALQGA 361 (964)
Q Consensus 339 ~~~~e~ekl~~~~~~~~~~l~~~ 361 (964)
....+|.++.+++..+...|..+
T Consensus 31 ~~e~eL~~~qeel~~~k~~l~~~ 53 (522)
T PF05701_consen 31 EKETELEKAQEELAKLKEQLEAA 53 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888877777766
No 54
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.00 E-value=1.1 Score=44.29 Aligned_cols=60 Identities=17% Similarity=0.256 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 554 LESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEE 613 (964)
Q Consensus 554 Le~~lkEaeEre~~L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEE 613 (964)
++..+..+......|+..++..+..|...+..|..++..|..++..++.||.++...|-=
T Consensus 64 lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~l 123 (132)
T PF07926_consen 64 LREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKL 123 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444567778888888888888888888999999999999888887766643
No 55
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.90 E-value=11 Score=50.90 Aligned_cols=98 Identities=23% Similarity=0.315 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 588 FREDMLRRDIEDLQRRYQA---SERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAAS 664 (964)
Q Consensus 588 ~rEeeLR~Eis~Le~RLEe---aEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A 664 (964)
.+...++..+.+|+++++. ++....+.....+ .+-+=--.++.|+... -.++.++....+.+
T Consensus 513 ~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 577 (1486)
T PRK04863 513 EQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLG-KNLDDEDELEQLQEEL--------------EARLESLSESVSEA 577 (1486)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Confidence 3456677788888886654 4444455543211 0000012334443332 33566666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 665 EERERSVNERLSQTLSRINVLEAQISCLRAEQTQLT 700 (964)
Q Consensus 665 ~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq 700 (964)
.++-..++.++.++..++..++.....+.+-...|.
T Consensus 578 ~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~ 613 (1486)
T PRK04863 578 RERRMALRQQLEQLQARIQRLAARAPAWLAAQDALA 613 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHH
Confidence 777677888888888888888877766655444433
No 56
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.87 E-value=6.1 Score=47.70 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhcc
Q 002118 906 GIQAELDALRRRHSAALELMGE 927 (964)
Q Consensus 906 ~Le~el~eLqqRY~TlLEMlGE 927 (964)
..+..+..++.||.+++.+++.
T Consensus 404 ~~ka~i~t~E~rL~aa~ke~ea 425 (522)
T PF05701_consen 404 QTKAAIKTAEERLEAALKEAEA 425 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666666543
No 57
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.82 E-value=7.8 Score=48.49 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 716 EYLAAKEEADTQEGRANQLEEEIKELRRKHKQ 747 (964)
Q Consensus 716 e~~aakeE~~~le~r~~qLEeeL~elr~k~~~ 747 (964)
+|.-.|.++..+..++.-++++|.+.+-+|+.
T Consensus 484 e~emlKaen~rqakkiefmkEeiQethldyR~ 515 (1265)
T KOG0976|consen 484 EYEMLKAENERQAKKIEFMKEEIQETHLDYRS 515 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555444433
No 58
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=95.73 E-value=7.7 Score=47.88 Aligned_cols=118 Identities=29% Similarity=0.452 Sum_probs=69.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 623 RPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKS 702 (964)
Q Consensus 623 rPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~q 702 (964)
-.+++||+.|..+-..-+...+.+=..|..+-.+++..++.....-|.+--.......+++.++..+..+| .+
T Consensus 530 e~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~Lr-------Kq 602 (786)
T PF05483_consen 530 EKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLR-------KQ 602 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHH-------HH
Confidence 46799999999998888888888888888888888888776665544443333333444555555554444 33
Q ss_pred HHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 703 LEKERQRAAENRQEYLAAKE-------EADTQEGRANQLEEEIKELRRKHKQ 747 (964)
Q Consensus 703 LE~Er~r~~~~r~e~~aake-------E~~~le~r~~qLEeeL~elr~k~~~ 747 (964)
++........++++-.+.+. .+..++.++..|+.++..++..|..
T Consensus 603 vEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE 654 (786)
T PF05483_consen 603 VENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEE 654 (786)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33322222223333333332 2334555666666666666665544
No 59
>PRK11637 AmiB activator; Provisional
Probab=95.71 E-value=5.9 Score=46.32 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002118 724 ADTQEGRANQLEEEIKELRR 743 (964)
Q Consensus 724 ~~~le~r~~qLEeeL~elr~ 743 (964)
+..++.....+...|..+..
T Consensus 235 l~~l~~~~~~L~~~I~~l~~ 254 (428)
T PRK11637 235 LSELRANESRLRDSIARAER 254 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555554433
No 60
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.58 E-value=6.8 Score=46.17 Aligned_cols=37 Identities=38% Similarity=0.398 Sum_probs=14.0
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 449 QVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGL 485 (964)
Q Consensus 449 qLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~L 485 (964)
+...+=+++++..-.....-.||..+|++++.++..+
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~ 78 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASL 78 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 61
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.41 E-value=9.1 Score=46.52 Aligned_cols=84 Identities=20% Similarity=0.273 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 624 PLLRQIEAIQETTARRA-EAWAAVERSLNLRLQEAEAKAA-------ASEERERSVNERLSQTLSRINVLEAQISCLRAE 695 (964)
Q Consensus 624 PLLRQIEtLQaQ~asqs-enWe~iE~sL~~RLaeaE~~l~-------~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e 695 (964)
.|--.|.-+.++|.... .|=..||..+..+|.++.+... .+.+.=+.++..+..+..++..||..+..+-..
T Consensus 246 eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~ 325 (546)
T KOG0977|consen 246 ELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKR 325 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHH
Confidence 34446777777776543 4566788889999999885221 112222456666667777777777777777777
Q ss_pred HHHHHHHHHHHH
Q 002118 696 QTQLTKSLEKER 707 (964)
Q Consensus 696 ~~~Lq~qLE~Er 707 (964)
+.+|.-+|..++
T Consensus 326 I~dL~~ql~e~~ 337 (546)
T KOG0977|consen 326 IEDLEYQLDEDQ 337 (546)
T ss_pred HHHHHhhhhhhh
Confidence 777777776543
No 62
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.37 E-value=9.1 Score=46.26 Aligned_cols=97 Identities=28% Similarity=0.367 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 002118 671 VNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKEL---RRKHKQ 747 (964)
Q Consensus 671 ~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er~r~~~~r~e~~aakeE~~~le~r~~qLEeeL~el---r~k~~~ 747 (964)
++..+.+.+-|-.+|=.+.+.+-.++..|+.++-.-| .+.-+|.-+|.++..++..+.-+..+++++ +.=-.+
T Consensus 154 lr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR----~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAek 229 (772)
T KOG0999|consen 154 LRDELKEYKFREARLLSEYSELEEENISLQKQVSNLR----QSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEK 229 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHh----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555555555555554433 345567777777777666655444444332 222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 002118 748 ELQEALMHRELLQQEIEREKTARVDLE 774 (964)
Q Consensus 748 elqea~~~~e~lqq~lE~Ek~~r~elE 774 (964)
++.++. +-++++.+...+.+.++.
T Consensus 230 QlEEAL---eTlq~EReqk~alkkEL~ 253 (772)
T KOG0999|consen 230 QLEEAL---ETLQQEREQKNALKKELS 253 (772)
T ss_pred HHHHHH---HHHHhHHHHHHHHHHHHH
Confidence 444443 224444444433334443
No 63
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.32 E-value=0.0097 Score=73.25 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhH
Q 002118 351 MKMMETALQGAARQAQAKADEIAKMMNE 378 (964)
Q Consensus 351 ~~~~~~~l~~~~r~~~~k~~~~A~L~e~ 378 (964)
|.-|=.-+.|+|.+-..|..-|..++.-
T Consensus 111 l~kLL~LlLgcAV~c~~ke~yI~~I~~L 138 (713)
T PF05622_consen 111 LKKLLQLLLGCAVQCENKEEYIQRIMEL 138 (713)
T ss_dssp HHHHHHHHHHHTTSSSTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcCccHHHHHHHHHCC
Confidence 3334445667776666666666666543
No 64
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=95.24 E-value=5.7 Score=43.18 Aligned_cols=101 Identities=21% Similarity=0.364 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----ccchHHHHHHHHHHHHHHHHHHHHHH
Q 002118 571 ALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPE----STRPLLRQIEAIQETTARRAEAWAAV 646 (964)
Q Consensus 571 qIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~e----ATrPLLRQIEtLQaQ~asqsenWe~i 646 (964)
.+..++..+ +.....+.+.+..-+..|..||..++....+-....+. -...|.++|..|+..+..-..+|..-
T Consensus 71 ~i~~~~~~v---~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~er 147 (247)
T PF06705_consen 71 QINNMQERV---ENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREER 147 (247)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333 23344455556666666666666666666665554332 24568889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 647 ERSLNLRLQEAEAKAAASEERERSVNER 674 (964)
Q Consensus 647 E~sL~~RLaeaE~~l~~A~eREr~~~ek 674 (964)
|..|..||.+....+.....+|+..|+.
T Consensus 148 E~~i~krl~e~~~~l~~~i~~Ek~~Re~ 175 (247)
T PF06705_consen 148 EENILKRLEEEENRLQEKIEKEKNTRES 175 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888773
No 65
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.15 E-value=11 Score=45.93 Aligned_cols=114 Identities=18% Similarity=0.394 Sum_probs=78.4
Q ss_pred HHHHHHHHhHHHHHH-----HHHHHHhcc----cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH--HHHHhhh
Q 002118 369 ADEIAKMMNENEHLK-----AVIEDLKRK----TNDAELETLREEYHQ----RVATLERKVYALTKERDTL--RREQNKK 433 (964)
Q Consensus 369 ~~~~A~L~e~N~~L~-----~~~e~l~~~----~~~~~~~~L~eEy~q----RI~ALErKlQ~L~KErD~L--rke~ak~ 433 (964)
-++|..|.+.-..|. .++..++.- .+..-++.++..|.. ++..+|..|..+-.-.+.. ++.....
T Consensus 28 ~~~i~~Le~~k~~l~~~pv~~el~kvk~l~l~Ges~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~ 107 (569)
T PRK04778 28 YKRIDELEERKQELENLPVNDELEKVKKLNLTGQSEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEI 107 (569)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 456666666655543 345544432 345567777777765 6777777777665555543 2222234
Q ss_pred hHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 434 SDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEK 482 (964)
Q Consensus 434 s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~ 482 (964)
..+...|.+-++.|..+..+=..|=..+-+|+..|..|+.+-.++.+.+
T Consensus 108 ~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~l 156 (569)
T PRK04778 108 NEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSL 156 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667799999999999999999999999999999999998877766544
No 66
>PRK01156 chromosome segregation protein; Provisional
Probab=94.94 E-value=16 Score=46.62 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 591 DMLRRDIEDLQRRYQASERRCEELV 615 (964)
Q Consensus 591 eeLR~Eis~Le~RLEeaEsRaEELS 615 (964)
+.|..++..|.++...++....++.
T Consensus 419 ~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 419 QDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555444
No 67
>PRK09039 hypothetical protein; Validated
Probab=94.82 E-value=2.8 Score=48.02 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 554 LESRLREAGERETMLVQALEELRQTLS 580 (964)
Q Consensus 554 Le~~lkEaeEre~~L~qqIedLRe~Le 580 (964)
|.+.+...+.....|..+|.+|-+.|.
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~ 70 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLS 70 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433445555555444443
No 68
>PRK11281 hypothetical protein; Provisional
Probab=94.72 E-value=21 Score=47.06 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-C-----CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 592 MLRRDIEDLQRRYQASERRCEELVTQV-P-----ESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASE 665 (964)
Q Consensus 592 eLR~Eis~Le~RLEeaEsRaEELSssv-~-----eATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~ 665 (964)
.|+..+.+.-++++.+..+.+.+.... + -...++ +|+|+..++....-..|+.-=..++++|..++++-+.|+
T Consensus 84 ~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl-~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ 162 (1113)
T PRK11281 84 QLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSL-RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQ 162 (1113)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 444555555555555555555555421 1 123334 899999999999999999999999999999998877777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002118 666 ERERSVNERLSQTLSRINV 684 (964)
Q Consensus 666 eREr~~~ekl~e~~~ri~~ 684 (964)
.+=.+.+.++.++..+++.
T Consensus 163 ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 163 AALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 7655566666555544433
No 69
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.71 E-value=4.5 Score=43.04 Aligned_cols=137 Identities=26% Similarity=0.344 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHhHHHHHHHHHHHHhcc--cchHHHHHHHHHHH---HHHHHHH
Q 002118 342 CELEKLKREMKMMETALQGA---ARQAQAKADEIAKMMNENEHLKAVIEDLKRK--TNDAELETLREEYH---QRVATLE 413 (964)
Q Consensus 342 ~e~ekl~~~~~~~~~~l~~~---~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~--~~~~~~~~L~eEy~---qRI~ALE 413 (964)
.|+..|++.++++...++.| .-.+..+---...|.+.|..|.++.-.+.+. +=.+.|..|.++-. --++-+.
T Consensus 43 ~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk 122 (193)
T PF14662_consen 43 EEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLK 122 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHH
Confidence 47888888888888888877 3333333334445555666655555444442 11234444444432 3456667
Q ss_pred HHHHHHHHHHHHHHHHHh----hhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 414 RKVYALTKERDTLRREQN----KKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGL 485 (964)
Q Consensus 414 rKlQ~L~KErD~Lrke~a----k~s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~L 485 (964)
++...|+.+.++|++++- -.+...+.+-|+..+|.. |-+..-.++.++--||.+|..+|+.+..+
T Consensus 123 ~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~e-------L~~~ieEy~~~teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 123 KRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEE-------LKKTIEEYRSITEELRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777778778887777652 122334455555555554 56677788889999999999998877543
No 70
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.65 E-value=7.5 Score=41.58 Aligned_cols=69 Identities=19% Similarity=0.350 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 578 TLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSL 650 (964)
Q Consensus 578 ~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL 650 (964)
.|...++.+..+++.+..+|..|-.||.++++|++-+.-+|. +|=++|+-|+.-+.....-+..+=..|
T Consensus 127 ~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVa----kLeke~DdlE~kl~~~k~ky~~~~~eL 195 (205)
T KOG1003|consen 127 SLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVA----KLEKERDDLEEKLEEAKEKYEEAKKEL 195 (205)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH----HHcccHHHHHHhhHHHHHHHHHHHHHH
Confidence 455677788888999999999999999999999999986553 555667777666665555444443333
No 71
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.13 E-value=20 Score=44.42 Aligned_cols=94 Identities=14% Similarity=0.346 Sum_probs=62.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHH
Q 002118 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELE 933 (964)
Q Consensus 854 ~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVE 933 (964)
.|+.+...+++-...+..+.+.|.-....|---++.|..+.+.+...+.-+..-+ .-+..|+.--=+.++--+..-+
T Consensus 411 aLq~amekLq~~f~~~~~e~adl~e~~e~le~~~~ql~~et~ti~eyi~ly~~qr---~~~k~r~~e~~~~i~~l~~~~e 487 (617)
T PF15070_consen 411 ALQEAMEKLQSRFMDLMEEKADLKERVEKLEHRFIQLSGETDTIGEYITLYQSQR---AVLKQRHQEKEEYISRLAQDRE 487 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCccchhhhhccccccc---cccchhHHHHHHHHHHHHHHHH
Confidence 6777788888888888888888888888888888888888888887765554444 3444555432222222234456
Q ss_pred HHHHhHHHHHHHHHHHH
Q 002118 934 ELRADIMDLKEMYREQV 950 (964)
Q Consensus 934 ELraDL~DVKeMYR~QI 950 (964)
+++.-|..|..|.-.++
T Consensus 488 ~mk~kl~elq~lv~~l~ 504 (617)
T PF15070_consen 488 EMKVKLLELQELVLRLV 504 (617)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67777777776665555
No 72
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.99 E-value=26 Score=45.22 Aligned_cols=54 Identities=11% Similarity=0.108 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 591 DMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVER 648 (964)
Q Consensus 591 eeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~iE~ 648 (964)
..|-.+|=.|.+++..|+.-..-... -|..|+--+-+||.+.+.=-.+|.-+..
T Consensus 297 ~tleseiiqlkqkl~dm~~erdtdr~----kteeL~eEnstLq~q~eqL~~~~ellq~ 350 (1195)
T KOG4643|consen 297 ATLESEIIQLKQKLDDMRSERDTDRH----KTEELHEENSTLQVQKEQLDGQMELLQI 350 (1195)
T ss_pred CChHHHHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHHHHHHHHhhhhhhHhhh
Confidence 34566666777777766554433332 2556777777788777777777776655
No 73
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.89 E-value=22 Score=44.06 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002118 575 LRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQ 617 (964)
Q Consensus 575 LRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSss 617 (964)
|-..|++.+.+....-+....|+...+.+|+++...|++|-+.
T Consensus 266 l~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~q 308 (617)
T PF15070_consen 266 LMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQ 308 (617)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4455666666676777778899999999999999999998854
No 74
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=93.86 E-value=23 Score=44.15 Aligned_cols=99 Identities=21% Similarity=0.259 Sum_probs=72.6
Q ss_pred HHHHHHHhhhhHHHHHHHH-------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 002118 854 AFESILRQKEGELASYMSR-------L-ASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELM 925 (964)
Q Consensus 854 ~LqA~LRqrEGEla~LQ~E-------L-arLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMl 925 (964)
.|+.-|+++-.|...+=.+ | .++...|+....|+..|+..+..|+..+. .-...+..+.....++-.=|
T Consensus 475 dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq---~~qe~la~l~~QL~~Ar~~l 551 (739)
T PF07111_consen 475 DLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQ---EKQESLAELEEQLEAARKSL 551 (739)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhH
Confidence 4555555554443333222 2 44567888999999999998888887754 44666778888999999999
Q ss_pred ccchhHHHHHHHhHHHHHHHHHHHHHHHHh
Q 002118 926 GERDEELEELRADIMDLKEMYREQVNLLVN 955 (964)
Q Consensus 926 GEKsEeVEELraDL~DVKeMYR~QID~LLk 955 (964)
.|..+...+||-++.-..+.|-.=.++-|.
T Consensus 552 qes~eea~~lR~EL~~QQ~~y~~alqekvs 581 (739)
T PF07111_consen 552 QESTEEAAELRRELTQQQEVYERALQEKVS 581 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999754444443
No 75
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.61 E-value=20 Score=42.75 Aligned_cols=15 Identities=7% Similarity=0.136 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhhh
Q 002118 510 LQETIEKHQVELGEQ 524 (964)
Q Consensus 510 lqe~iek~q~eL~aq 524 (964)
..+.+..++.++..+
T Consensus 172 ~k~~~~e~~~~i~~l 186 (562)
T PHA02562 172 NKDKIRELNQQIQTL 186 (562)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444555555443
No 76
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.49 E-value=24 Score=43.12 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002118 561 AGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVT 616 (964)
Q Consensus 561 aeEre~~L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSs 616 (964)
..+....+..+...|...++|-.+....-+.++ ..+..++.++..++.+.+.+..
T Consensus 311 l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~-~~~~~l~~~l~~l~~~~~~~~~ 365 (560)
T PF06160_consen 311 LYEYLEHAKEQNKELKEELERVSQSYTLNHNEL-EIVRELEKQLKELEKRYEDLEE 365 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444455555555555555444333222 2334455555555555555554
No 77
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.40 E-value=6.3 Score=39.98 Aligned_cols=92 Identities=23% Similarity=0.352 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHH
Q 002118 656 EAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAA---KEEADTQEGRAN 732 (964)
Q Consensus 656 eaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er~r~~~~r~e~~aa---keE~~~le~r~~ 732 (964)
.+....+.+..|-..+..++..+..+...+|.++.++...+..|..+|+....++......+... ...+..+..++.
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq 83 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQ 83 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHH
Confidence 33444444444544455555555555555555555555555555555554443333322222111 123346777788
Q ss_pred HHHHHHHHHHHHHHH
Q 002118 733 QLEEEIKELRRKHKQ 747 (964)
Q Consensus 733 qLEeeL~elr~k~~~ 747 (964)
.||.+|......+..
T Consensus 84 ~LEeele~ae~~L~e 98 (143)
T PF12718_consen 84 LLEEELEEAEKKLKE 98 (143)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888777666643
No 78
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.39 E-value=25 Score=42.99 Aligned_cols=262 Identities=17% Similarity=0.294 Sum_probs=127.0
Q ss_pred HHHHHHHHhHHHHHH-----HHHHHHhcc----cchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH--HHHHhhh
Q 002118 369 ADEIAKMMNENEHLK-----AVIEDLKRK----TNDAELETLREEYH----QRVATLERKVYALTKERDTL--RREQNKK 433 (964)
Q Consensus 369 ~~~~A~L~e~N~~L~-----~~~e~l~~~----~~~~~~~~L~eEy~----qRI~ALErKlQ~L~KErD~L--rke~ak~ 433 (964)
.++|.+|...-..|. .++..++.- .+...++.++..|. ..+..++..|..+-.-.+.. ++-....
T Consensus 24 ~k~i~~Le~~k~~l~~~pv~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i 103 (560)
T PF06160_consen 24 YKEIDELEERKNELMNLPVADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAI 103 (560)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 345666665555543 345544442 22344555555553 45666666666554444432 2222233
Q ss_pred hHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 002118 434 SDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQET 513 (964)
Q Consensus 434 s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~Lk~Kle~e~~k~es~kr~~~a~EK~lqe~ 513 (964)
..+...|..-++.|..+..+=..|=..+-+|+..|..|+.+-.++.+.+-..+.. ........++.
T Consensus 104 ~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~----------~G~a~~~Le~~---- 169 (560)
T PF06160_consen 104 KEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFS----------YGPAIEELEKQ---- 169 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------hchhHHHHHHH----
Confidence 4556788888888888888888888888888888888887766665544333211 11101111111
Q ss_pred HHHHHHHHhhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 002118 514 IEKHQVELGEQKDYYTNA-----LAAAKEAEELAEARANNEARAELESRLREAGER-ETMLVQALEELRQTLSRTEQQAV 587 (964)
Q Consensus 514 iek~q~eL~aqk~~~~~~-----L~aAke~e~lAE~ra~~Ea~~~Le~~lkEaeEr-e~~L~qqIedLRe~LeRaeq~a~ 587 (964)
+..+..... .|... -.+|++ .+...+.........=.++..+-.. ...+-.++.+|+..++......-
T Consensus 170 L~~ie~~F~----~f~~lt~~GD~~~A~e--il~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy 243 (560)
T PF06160_consen 170 LENIEEEFS----EFEELTENGDYLEARE--ILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGY 243 (560)
T ss_pred HHHHHHHHH----HHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCC
Confidence 111111110 01100 011111 1111111111111111111211111 12455677888877776554433
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 588 FR-EDMLRRDIEDLQRRYQASERRCEELVTQ-VPESTRPLLRQIEAIQETTARRAEAWAAVERSL 650 (964)
Q Consensus 588 ~r-EeeLR~Eis~Le~RLEeaEsRaEELSss-v~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL 650 (964)
.- ...+-.++..+..++..+......+.-. +......+-.+|+.|-..+..--.+-..++..+
T Consensus 244 ~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~ 308 (560)
T PF06160_consen 244 YLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNL 308 (560)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 22 2255566666666666655555544422 334444555577777666665555555555443
No 79
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.19 E-value=27 Score=42.94 Aligned_cols=49 Identities=24% Similarity=0.354 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002118 670 SVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADT 726 (964)
Q Consensus 670 ~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er~r~~~~r~e~~aakeE~~~ 726 (964)
...+........|+.+|.++...+.++..|..+|+. +..|...|.++..
T Consensus 307 S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~--------~sDYeeIK~ELsi 355 (629)
T KOG0963|consen 307 SLVEEREKHKAQISALEKELKAKISELEELKEKLNS--------RSDYEEIKKELSI 355 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hccHHHHHHHHHH
Confidence 334444455567788888888888777777777764 2345555554443
No 80
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=93.12 E-value=22 Score=41.83 Aligned_cols=23 Identities=48% Similarity=0.637 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 403 EEYHQRVATLERKVYALTKERDTLR 427 (964)
Q Consensus 403 eEy~qRI~ALErKlQ~L~KErD~Lr 427 (964)
+||++- .|=+|+|++-||..+|.
T Consensus 98 eEfisn--tLlkkiqal~keketla 120 (552)
T KOG2129|consen 98 EEFISN--TLLKKIQALFKEKETLA 120 (552)
T ss_pred HHHHHH--HHHHHHHHhhccccccc
Confidence 466542 57788999999988763
No 81
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.02 E-value=0.025 Score=69.67 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHhcc
Q 002118 368 KADEIAKMMNENEHLKAVIEDLKRK 392 (964)
Q Consensus 368 k~~~~A~L~e~N~~L~~~~e~l~~~ 392 (964)
+..+++.|+++++.|..++..+...
T Consensus 198 l~~~i~~L~~e~~~L~~e~~~l~~~ 222 (713)
T PF05622_consen 198 LEKQISDLQEEKESLQSENEELQER 222 (713)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHhHHHhhhhhhhhhcc
Confidence 3455666666666666666655543
No 82
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.02 E-value=0.028 Score=69.43 Aligned_cols=137 Identities=22% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 002118 567 MLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAV 646 (964)
Q Consensus 567 ~L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~i 646 (964)
.++.+|..|+..+.............+-.++..++.+|+....++++|-..+ +-|.++...++..+....+.|..+
T Consensus 65 ~~k~~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~~~~~~~~~~~~ele~~~----~~l~~~~~~le~el~~~~e~~~~~ 140 (722)
T PF05557_consen 65 ELKAQLNQLEYELEQLKQEHERAQLELEKELRELQRQLEREFKRNQELEARL----KQLEEREEELEEELEEAEEELEQL 140 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777776666666677777888888888888777777776543 345666777777777777788887
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 647 ERSLNLRLQEAEAKA----AASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKER 707 (964)
Q Consensus 647 E~sL~~RLaeaE~~l----~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er 707 (964)
...|-.+...++... ..+......++.++..+..++..++.++..+..++..++.+|+..+
T Consensus 141 k~~le~~~~~L~~E~~~~~~e~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~ 205 (722)
T PF05557_consen 141 KRKLEEEKRRLQREKEQLLEEAREEISSLKNELSELERQAENAESQIQSLESELEELKEQLEELQ 205 (722)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777765555553322 2222233345555555555555566666666655555555555444
No 83
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.99 E-value=29 Score=42.72 Aligned_cols=69 Identities=20% Similarity=0.326 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 343 ELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYA 418 (964)
Q Consensus 343 e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~ 418 (964)
-+++|.+++..-...|.. ||-.+ ....-.|-+.+...+......+. ..+..|.--|-.-||.|=+.-+.
T Consensus 16 dle~LQreLd~~~~~l~~--~Q~~S-~~srk~L~e~trefkk~~pe~k~----k~~~~llK~yQ~EiD~LtkRsk~ 84 (629)
T KOG0963|consen 16 DLERLQRELDAEATEIAQ--RQDES-EISRKRLAEETREFKKNTPEDKL----KMVNPLLKSYQSEIDNLTKRSKF 84 (629)
T ss_pred cHHHHHHHHHHHHHHHHh--hhhhH-HHHHHHHHHhHHHHhccCcHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 367787877777776664 34323 22222344444444433333332 44556666677777766555443
No 84
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.72 E-value=11 Score=37.33 Aligned_cols=46 Identities=15% Similarity=0.256 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 594 RRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSL 650 (964)
Q Consensus 594 R~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL 650 (964)
+.++..|+..+..+..+...+.. +|..++.-+......|...+..+
T Consensus 2 ~~e~~~l~~e~~~~~~~~~~~~~-----------~~~~~~~dl~~q~~~a~~Aq~~Y 47 (132)
T PF07926_consen 2 ESELSSLQSELQRLKEQEEDAEE-----------QLQSLREDLESQAKIAQEAQQKY 47 (132)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666665555555555 67777777777777777776665
No 85
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.61 E-value=37 Score=42.90 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 648 RSLNLRLQEAEAKAAASEERERSVNERLSQT 678 (964)
Q Consensus 648 ~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~ 678 (964)
..|.+||.+++..+--..-.-..++.++...
T Consensus 489 ~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~ 519 (1118)
T KOG1029|consen 489 DQLQARIKELQEKLQKLAPEKQELNHQLKQK 519 (1118)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 3477777777776655444434455544433
No 86
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.44 E-value=37 Score=42.56 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 002118 568 LVQALEELRQTLSRTE 583 (964)
Q Consensus 568 L~qqIedLRe~LeRae 583 (964)
|..++.+++..|..++
T Consensus 199 L~~ql~~l~~~l~~aE 214 (754)
T TIGR01005 199 LAPEIADLSKQSRDAE 214 (754)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455666666665443
No 87
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.39 E-value=21 Score=39.64 Aligned_cols=77 Identities=21% Similarity=0.234 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 002118 567 MLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAV 646 (964)
Q Consensus 567 ~L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~i 646 (964)
.+++-....|+.|..=.+-.+.-|.+|-.++..++.|..++++|++.|.. -.+++..-+..+..-+-..
T Consensus 24 ~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~-----------E~e~~Kek~e~q~~q~y~q 92 (333)
T KOG1853|consen 24 EYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTT-----------EQERNKEKQEDQRVQFYQQ 92 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 35555666677776666666677888999999999999999999998886 2344444444444444444
Q ss_pred HHHHHHHH
Q 002118 647 ERSLNLRL 654 (964)
Q Consensus 647 E~sL~~RL 654 (964)
+..|-.-|
T Consensus 93 ~s~Leddl 100 (333)
T KOG1853|consen 93 ESQLEDDL 100 (333)
T ss_pred HHHHHHHH
Confidence 44443333
No 88
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=92.27 E-value=13 Score=43.56 Aligned_cols=165 Identities=28% Similarity=0.338 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHH-----HHhHH--HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Q 002118 343 ELEKLKREMKMMETALQGA-ARQAQAKADEIAK-----MMNEN--EHLKAVIEDLKRKTNDAELETLREEYHQRVATLER 414 (964)
Q Consensus 343 e~ekl~~~~~~~~~~l~~~-~r~~~~k~~~~A~-----L~e~N--~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALEr 414 (964)
.+.+|+.+-=.|++-|+-- +=+.+-+-+.|-+ +.++| .||+.+.-.|.+.. +.+-+.|-.-...||+.||.
T Consensus 137 kl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentl-EQEqEalvN~LwKrmdkLe~ 215 (552)
T KOG2129|consen 137 KLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTL-EQEQEALVNSLWKRMDKLEQ 215 (552)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4566654443444444432 1222333333333 34555 77777666666554 35556777777899999999
Q ss_pred HHHHHHHHHHH------HHHHHhhhh----HHHHHHhhHHHHHHHHHHHhHH----hhHHHHHHHHHHHHHHHHHHHHHH
Q 002118 415 KVYALTKERDT------LRREQNKKS----DAAALLKEKDEIINQVMAEGEE----LSKKQAAQEAQIRKLRAQIRELEE 480 (964)
Q Consensus 415 KlQ~L~KErD~------Lrke~ak~s----~~~a~LkEKDEqIaqLmeEGEK----LSKkELq~sniIKKLRakikE~Ee 480 (964)
--.||.+-.|+ +=+.+++.- |..+. + --.|.-|..|-+. |+.-|+.+.-.+-.+|+..++..+
T Consensus 216 ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~--~-~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~re 292 (552)
T KOG2129|consen 216 EKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAA--E-KLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHRE 292 (552)
T ss_pred HHHHHHHHhcCcccCCCchhhhhcCccccCchHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 88888888774 222333221 11111 1 1356667777666 566677777777788999999999
Q ss_pred HHHHHHhHHHHHHHhHHHHHHhHHHHHHHHH
Q 002118 481 EKKGLVTKLQVEENKVESIKRDKTATEKLLQ 511 (964)
Q Consensus 481 e~~~Lk~Kle~e~~k~es~kr~~~a~EK~lq 511 (964)
+..+|+.|+..+....++++|...+.++.++
T Consensus 293 en~rlQrkL~~e~erRealcr~lsEsessle 323 (552)
T KOG2129|consen 293 ENERLQRKLINELERREALCRMLSESESSLE 323 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999999999999888888888877776653
No 89
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.86 E-value=2 Score=43.57 Aligned_cols=85 Identities=24% Similarity=0.325 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHH
Q 002118 864 GELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLK 943 (964)
Q Consensus 864 GEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEELraDL~DVK 943 (964)
.++..|+.+|.-+...+..|..||+.++.+.+.+... +......+.+|..+...++.++.++. .+-..++
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~---lq~~q~kv~eLE~~~~~~~~~l~~~E-------~ek~q~~ 121 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTLRSEKENLDKE---LQKKQEKVSELESLNSSLENLLQEKE-------QEKVQLK 121 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHH
Confidence 5778888999999999999999999999888888644 67777888888888888877766544 4477788
Q ss_pred HHHHHHHHHHHhhcc
Q 002118 944 EMYREQVNLLVNKVI 958 (964)
Q Consensus 944 eMYR~QID~LLkQi~ 958 (964)
+-++..|.+|.+|+.
T Consensus 122 e~~~~~ve~L~~ql~ 136 (140)
T PF10473_consen 122 EESKSAVEMLQKQLK 136 (140)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888877764
No 90
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=91.74 E-value=54 Score=42.89 Aligned_cols=65 Identities=23% Similarity=0.378 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 672 NERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRR 743 (964)
Q Consensus 672 ~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er~r~~~~r~e~~aakeE~~~le~r~~qLEeeL~elr~ 743 (964)
..++..+..++..++.++..|+.+...+...+.....++ ...+.....+..++..-...|+.++.
T Consensus 400 e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~-------~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 400 ENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEK-------EHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666677777777777777777666655433221 12234444555555555555555533
No 91
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.48 E-value=26 Score=38.72 Aligned_cols=69 Identities=25% Similarity=0.320 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 002118 551 RAELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVP 619 (964)
Q Consensus 551 ~~~Le~~lkEaeEre~~L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~ 619 (964)
...++..+..+.++...|..++.+|+..+.+.+.....-+..+..++..+.+..+.....-++|.+-++
T Consensus 105 ~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 105 INSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344666666777777778888888888888888888888888888888888888888877777777554
No 92
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=91.39 E-value=31 Score=39.41 Aligned_cols=141 Identities=23% Similarity=0.327 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccc--hHHHHHHHHHH----------------
Q 002118 344 LEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTN--DAELETLREEY---------------- 405 (964)
Q Consensus 344 ~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~--~~~~~~L~eEy---------------- 405 (964)
++-+-+=+.+.+.-|+.|||-=|++..++..|++.|..|..++......-. .-+| ++++++
T Consensus 64 idavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL-~~kdeLL~~ys~~~ee~~~~~~ 142 (306)
T PF04849_consen 64 IDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHEL-SMKDELLQIYSNDDEESEPESS 142 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcHhhhcccccC
Confidence 333444466678888888888888888888888888776655533222100 0000 011111
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH---------------HHHhhHHHHHHHHHHHh
Q 002118 406 ----------------HQRVATLERKVYALTKERDTLRREQNKKSDAA---------------ALLKEKDEIINQVMAEG 454 (964)
Q Consensus 406 ----------------~qRI~ALErKlQ~L~KErD~Lrke~ak~s~~~---------------a~LkEKDEqIaqLmeEG 454 (964)
.--+++|++|++.|-.|...||.+..+....+ ..|.+-..+|+.|-+|=
T Consensus 143 ~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseEL 222 (306)
T PF04849_consen 143 ESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEEL 222 (306)
T ss_pred CCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHH
Confidence 12378999999999999999999877543222 24444455555555543
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 455 EELSKKQAAQEAQIRKLRAQIRELEEEKKGL 485 (964)
Q Consensus 455 EKLSKkELq~sniIKKLRakikE~Eee~~~L 485 (964)
.+-.-.-..+.--|-.|.++|-+++..++.+
T Consensus 223 a~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~ 253 (306)
T PF04849_consen 223 ARKTEENRRQQEEITSLLSQIVDLQQRCKQL 253 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444555555555555444444
No 93
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.31 E-value=46 Score=41.25 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH
Q 002118 340 SVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIE 387 (964)
Q Consensus 340 ~~~e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e 387 (964)
...||+.|..+|..+...+......+..+...+..+.++..+.+..+.
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~ 373 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENE 373 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666665544444444444444444444444333
No 94
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.10 E-value=45 Score=40.83 Aligned_cols=103 Identities=22% Similarity=0.248 Sum_probs=56.7
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHH
Q 002118 367 AKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEI 446 (964)
Q Consensus 367 ~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KErD~Lrke~ak~s~~~a~LkEKDEq 446 (964)
..+.+++.|...|+.|-..|.+..... .-+++|++.|. +|-.=..|++..-..-. .++..+..+|...-.-
T Consensus 232 ~i~~~ie~l~~~n~~l~e~i~e~ek~~--~~~eslre~~~-~L~~D~nK~~~y~~~~~------~k~~~~~~~l~~l~~E 302 (581)
T KOG0995|consen 232 SIANEIEDLKKTNRELEEMINEREKDP--GKEESLREKKA-RLQDDVNKFQAYVSQMK------SKKQHMEKKLEMLKSE 302 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCc--chHHHHHHHHH-HHHhHHHHHHHHHHHHH------hhhHHHHHHHHHHHHH
Confidence 456789999999999999888655433 33445554332 23333344442222211 1233445566666666
Q ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Q 002118 447 INQVMAEGEELSKKQAAQEAQIRKLRAQIREL 478 (964)
Q Consensus 447 IaqLmeEGEKLSKkELq~sniIKKLRakikE~ 478 (964)
|..--+|-|+|.+..-.+.++|.+-+--.++.
T Consensus 303 ie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dv 334 (581)
T KOG0995|consen 303 IEEKEEEIEKLQKENDELKKQIELQGISGEDV 334 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 66666666666666555555555544333333
No 95
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.95 E-value=47 Score=40.72 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHH
Q 002118 417 YALTKERDTLRREQNKKSDAAALL 440 (964)
Q Consensus 417 Q~L~KErD~Lrke~ak~s~~~a~L 440 (964)
-|+|+---...++....++..+-+
T Consensus 199 dy~~~~Y~~fl~g~d~~~~~~~El 222 (581)
T KOG0995|consen 199 DYTIRSYTSFLKGEDNSSELEDEL 222 (581)
T ss_pred HHHHHHHHHHhccCcccchHHHHH
Confidence 355554443333333333433333
No 96
>PRK01156 chromosome segregation protein; Provisional
Probab=90.82 E-value=58 Score=41.62 Aligned_cols=72 Identities=17% Similarity=0.269 Sum_probs=48.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhc
Q 002118 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMG 926 (964)
Q Consensus 854 ~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlG 926 (964)
.+...+..+.+++..+...++.++.....+...|-.+..+.+.++.....+..++.-+..| .+|..+|.-.|
T Consensus 678 ~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~~~~~~~~l-~~~r~~l~k~~ 749 (895)
T PRK01156 678 DIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKKAIGDL-KRLREAFDKSG 749 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhcc
Confidence 4556666777777777777777777777777777777777777776666666666655554 45555555433
No 97
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=90.65 E-value=29 Score=37.88 Aligned_cols=80 Identities=19% Similarity=0.281 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 580 SRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQ--VPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEA 657 (964)
Q Consensus 580 eRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSss--v~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaea 657 (964)
+..-..+....+.|+..+..|+.|+..++++.+.+... +..++.++-+.|-..-+ ..+..+++.+|. |+.+.
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~--~sa~~~fer~e~----kiee~ 178 (225)
T COG1842 105 EAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS--SSAMAAFERMEE----KIEER 178 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--hhhHHHHHHHHH----HHHHH
Confidence 33334444445567777777777777777777766644 44566666666655544 455555555554 33444
Q ss_pred HHHHHHHH
Q 002118 658 EAKAAASE 665 (964)
Q Consensus 658 E~~l~~A~ 665 (964)
+..+..+.
T Consensus 179 ea~a~~~~ 186 (225)
T COG1842 179 EARAEAAA 186 (225)
T ss_pred HHHHHHhH
Confidence 44444333
No 98
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=90.49 E-value=36 Score=38.70 Aligned_cols=29 Identities=10% Similarity=0.237 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 670 SVNERLSQTLSRINVLEAQISCLRAEQTQ 698 (964)
Q Consensus 670 ~~~ekl~e~~~ri~~LE~els~lR~e~~~ 698 (964)
.++..+..+..+++.||.+...++.....
T Consensus 241 tfk~Emekm~Kk~kklEKE~~~~k~k~e~ 269 (309)
T PF09728_consen 241 TFKKEMEKMSKKIKKLEKENQTWKSKWEK 269 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777777776654444
No 99
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.13 E-value=7.6 Score=38.55 Aligned_cols=91 Identities=25% Similarity=0.380 Sum_probs=55.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 339 DSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYA 418 (964)
Q Consensus 339 ~~~~e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~ 418 (964)
-++.-+++|...|+.++..+... -.+++.|..+-+.|..+|-.|-... .+ ......++..|+..++.
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l-------~~el~~l~~~r~~l~~Eiv~l~~~~--e~----~~~~~~~~~~L~~el~~ 79 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASL-------QEELARLEAERDELREEIVKLMEEN--EE----LRALKKEVEELEQELEE 79 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHH
Confidence 35678999999999999988865 3455556666666666555544332 11 12233555556655554
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHH
Q 002118 419 LTKERDTLRREQNKKSDAAALLKEKDEIINQVMA 452 (964)
Q Consensus 419 L~KErD~Lrke~ak~s~~~a~LkEKDEqIaqLme 452 (964)
+...-+ .+-..|=||.|.+..|..
T Consensus 80 l~~ry~----------t~LellGEK~E~veEL~~ 103 (120)
T PF12325_consen 80 LQQRYQ----------TLLELLGEKSEEVEELRA 103 (120)
T ss_pred HHHHHH----------HHHHHhcchHHHHHHHHH
Confidence 433332 344577888888887643
No 100
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.04 E-value=39 Score=38.41 Aligned_cols=102 Identities=25% Similarity=0.310 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHH
Q 002118 640 AEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLT----KSLEKERQRAAENRQ 715 (964)
Q Consensus 640 senWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq----~qLE~Er~r~~~~r~ 715 (964)
....+++-..|...+..++............+..-+-.+..+...|+.++..+++....+. ..|+.-|+++.....
T Consensus 144 ~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~ 223 (325)
T PF08317_consen 144 MQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKE 223 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHH
Confidence 3445788888888888888888888877777777777777777777777777765444322 234444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 716 EYLAAKEEADTQEGRANQLEEEIKEL 741 (964)
Q Consensus 716 e~~aakeE~~~le~r~~qLEeeL~el 741 (964)
++.+.+.++..++.++..+...++.+
T Consensus 224 ~i~~~k~~l~el~~el~~l~~~i~~~ 249 (325)
T PF08317_consen 224 EIEAKKKELAELQEELEELEEKIEEL 249 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444554444444444443
No 101
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=89.86 E-value=41 Score=38.40 Aligned_cols=129 Identities=21% Similarity=0.301 Sum_probs=75.3
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Q 002118 337 SADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKV 416 (964)
Q Consensus 337 s~~~~~e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKl 416 (964)
+.|-...|-|.-.-|..+..-|+-..|-|.--++=.-.|.+.|..|. +|..++|..|
T Consensus 50 c~~rv~qmtkty~Didavt~lLeEkerDLelaA~iGqsLl~~N~~L~-----------------------~~~~~le~~L 106 (306)
T PF04849_consen 50 CSDRVSQMTKTYNDIDAVTRLLEEKERDLELAARIGQSLLEQNQDLS-----------------------ERNEALEEQL 106 (306)
T ss_pred cccchhhhhcchhhHHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHH-----------------------HHHHHHHHHH
Confidence 33445556666667777766666555555443333344444444442 6777788888
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHhHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002118 417 YALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEE----LSKKQAAQEAQIRKLRAQIRELEEEKKGLVTK 488 (964)
Q Consensus 417 Q~L~KErD~Lrke~ak~s~~~a~LkEKDEqIaqLmeEGEK----LSKkELq~sniIKKLRakikE~Eee~~~Lk~K 488 (964)
........+|+-++..+.++-....-=++...---..... -|.-..++.-.+.-|+.|++.++++-..|+..
T Consensus 107 ~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~E 182 (306)
T PF04849_consen 107 GAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSE 182 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877766555433333222221111111111 12233556666888999999999988888753
No 102
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.83 E-value=9.4 Score=44.24 Aligned_cols=127 Identities=16% Similarity=0.267 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 571 ALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSL 650 (964)
Q Consensus 571 qIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL 650 (964)
...+|+..++|...+... ..|.+..++...++.|..-...+....+++.. |+..|+..+...-+-=..-|+.|
T Consensus 192 d~~eWklEvERV~PqLKv---~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~----~L~kl~~~i~~~lekI~sREk~i 264 (359)
T PF10498_consen 192 DPAEWKLEVERVLPQLKV---TIRADAKDWRSHLEQMKQHKKSIESALPETKS----QLDKLQQDISKTLEKIESREKYI 264 (359)
T ss_pred CHHHHHHHHHHHhhhhee---eccCCcchHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888887666633 24556677888888777777777766665544 66779999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 651 NLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLE 704 (964)
Q Consensus 651 ~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE 704 (964)
|.++..+-.+...+.++=..++++...+...+..+..+|+.+-.++.+.+.+++
T Consensus 265 N~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 265 NNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888887777777777777777777766666655555555544
No 103
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.80 E-value=25 Score=35.86 Aligned_cols=69 Identities=26% Similarity=0.394 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 628 QIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKER 707 (964)
Q Consensus 628 QIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er 707 (964)
.|++|...+.....+-+.++. +++...+.+ ..+..++..+....+.|+.+|..++.+...|...|+..+
T Consensus 25 ~v~~LEreLe~~q~~~e~~~~-------daEn~k~ei----e~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q 93 (140)
T PF10473_consen 25 HVESLERELEMSQENKECLIL-------DAENSKAEI----ETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQ 93 (140)
T ss_pred HHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777766665555444432 223222211 234555666666666777777777776666666666544
No 104
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.64 E-value=53 Score=39.31 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002118 463 AQEAQIRKLRAQIRELEEEKKG 484 (964)
Q Consensus 463 q~sniIKKLRakikE~Eee~~~ 484 (964)
.....|++|+.++..++.++..
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~~ 199 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIKT 199 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 105
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.04 E-value=3.7 Score=49.94 Aligned_cols=82 Identities=20% Similarity=0.285 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHH
Q 002118 866 LASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEM 945 (964)
Q Consensus 866 la~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEELraDL~DVKeM 945 (964)
+..|+.+++.|.+.=.++..+|-+|-.+++.++..+..-.....++..++.|-..+=-=|-|+...+++|+..|..++.|
T Consensus 431 ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 431 VERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445555555555555555544444455667777777777777889999999999999999999
Q ss_pred HH
Q 002118 946 YR 947 (964)
Q Consensus 946 YR 947 (964)
|+
T Consensus 511 ~~ 512 (652)
T COG2433 511 RK 512 (652)
T ss_pred Hh
Confidence 99
No 106
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=88.20 E-value=63 Score=38.34 Aligned_cols=67 Identities=24% Similarity=0.260 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHh
Q 002118 872 RLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRAD 938 (964)
Q Consensus 872 ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEELraD 938 (964)
.+..++.....+...+..|..+.+.++.....++..+.++..|+..|+.+=.+|-.=....++.+.+
T Consensus 318 ~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~ 384 (498)
T TIGR03007 318 ELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVS 384 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444445555555566666667777777777777766666665555555555543
No 107
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.99 E-value=54 Score=37.32 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002118 588 FREDMLRRDIEDLQRRYQASERRCEELVT 616 (964)
Q Consensus 588 ~rEeeLR~Eis~Le~RLEeaEsRaEELSs 616 (964)
||-.-+.+=+..|+..+..+..-..-|..
T Consensus 142 WR~~ll~gl~~~L~~~~~~L~~D~~~L~~ 170 (325)
T PF08317_consen 142 WRMQLLEGLKEGLEENLELLQEDYAKLDK 170 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666676666666555554444
No 108
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.65 E-value=69 Score=38.15 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=19.4
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002118 453 EGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVT 487 (964)
Q Consensus 453 EGEKLSKkELq~sniIKKLRakikE~Eee~~~Lk~ 487 (964)
+=..+..+-.+..+.+++++++|.+.+..+..|..
T Consensus 74 ~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 74 EIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 33334444455556666666666666665555543
No 109
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=87.20 E-value=48 Score=35.90 Aligned_cols=98 Identities=21% Similarity=0.325 Sum_probs=52.8
Q ss_pred HHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHhhHHHH
Q 002118 371 EIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKK----SDAAALLKEKDEI 446 (964)
Q Consensus 371 ~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KErD~Lrke~ak~----s~~~a~LkEKDEq 446 (964)
.+.+|...|.++..-|+.+.. -|..+-++.-..-......++.+.+|+|++...++.. +++.....---+.
T Consensus 31 k~~e~~~~~~~m~~i~~e~Ek-----~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~v 105 (207)
T PF05010_consen 31 KYEELHKENQEMRKIMEEYEK-----TIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEV 105 (207)
T ss_pred HHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344444444444444443332 3344455555555555666778888888877766533 3333333333345
Q ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHH
Q 002118 447 INQVMAEGEELSKKQAAQEAQIRKLRA 473 (964)
Q Consensus 447 IaqLmeEGEKLSKkELq~sniIKKLRa 473 (964)
|..+...-+.|=+.--.+...|++...
T Consensus 106 i~~~k~NEE~Lkk~~~ey~~~l~~~eq 132 (207)
T PF05010_consen 106 IEGYKKNEETLKKCIEEYEERLKKEEQ 132 (207)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666555555555554443
No 110
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=87.09 E-value=88 Score=38.82 Aligned_cols=48 Identities=17% Similarity=0.327 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002118 570 QALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQ 617 (964)
Q Consensus 570 qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSss 617 (964)
..+.+++..+...--.....-+.|+.++..++.++...+.+.-++.++
T Consensus 244 ~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~ 291 (650)
T TIGR03185 244 RSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAAD 291 (650)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444444443322222333456666666666666666666555544
No 111
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.99 E-value=94 Score=39.04 Aligned_cols=76 Identities=28% Similarity=0.372 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH-HHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 341 VCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEH-LKAVIEDLKRK-TNDAELETLREEYHQRVATLERKVYA 418 (964)
Q Consensus 341 ~~e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~-L~~~~e~l~~~-~~~~~~~~L~eEy~qRI~ALErKlQ~ 418 (964)
.....|+..++..+..++.++..-+|. ++-+..+.+.+ ++...+.+..+ .+-+++..|+.-|-.+++.++.++..
T Consensus 100 ~dr~~~~~~~l~~~q~a~~~~e~~lq~---q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~ 176 (716)
T KOG4593|consen 100 VDRKHKLLTRLRQLQEALKGQEEKLQE---QLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVML 176 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777666665444433 44444433333 33344444333 23466777888888888888877753
Q ss_pred H
Q 002118 419 L 419 (964)
Q Consensus 419 L 419 (964)
.
T Consensus 177 ~ 177 (716)
T KOG4593|consen 177 Q 177 (716)
T ss_pred H
Confidence 3
No 112
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=86.93 E-value=74 Score=37.76 Aligned_cols=10 Identities=20% Similarity=0.238 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 002118 652 LRLQEAEAKA 661 (964)
Q Consensus 652 ~RLaeaE~~l 661 (964)
.+|.+++.++
T Consensus 254 ~~l~~l~~~l 263 (498)
T TIGR03007 254 GRIEALEKQL 263 (498)
T ss_pred HHHHHHHHHH
Confidence 3334433333
No 113
>PRK09039 hypothetical protein; Validated
Probab=86.73 E-value=67 Score=37.06 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 681 RINVLEAQISCLRAEQTQLTKSLE 704 (964)
Q Consensus 681 ri~~LE~els~lR~e~~~Lq~qLE 704 (964)
++..|..|++.+|..+..|+..|.
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~ 161 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALD 161 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 114
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=86.29 E-value=1.1e+02 Score=39.30 Aligned_cols=105 Identities=14% Similarity=0.212 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 590 EDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERER 669 (964)
Q Consensus 590 EeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eREr 669 (964)
-+++.+.+...+.|++.+-....++.+ -..-|||++-..|.|+.++..+-..+++-.. ++.-.+..+.+...
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~----~h~~lL~K~~di~kQle~~~~s~~~~~~~~~----~L~d~le~~~~~~~ 483 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQ----EHADLLRKYDDIQKQLESAEQSIDDVEEENT----NLNDQLEELQRAAG 483 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 344444444555555544444444443 3456788888888888888777765554332 22222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 670 SVNERLSQTLSRINVLEAQISCLRAEQTQLTKS 702 (964)
Q Consensus 670 ~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~q 702 (964)
.+.-|.......+..++.++..+..+...|+..
T Consensus 484 ~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 484 RAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333333334444444554444444444444
No 115
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.64 E-value=77 Score=40.17 Aligned_cols=57 Identities=16% Similarity=0.292 Sum_probs=34.7
Q ss_pred HHHHhhHHHHHHHHHHHhHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002118 437 AALLKEKDEIINQVMAEGEE-LSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEE 493 (964)
Q Consensus 437 ~a~LkEKDEqIaqLmeEGEK-LSKkELq~sniIKKLRakikE~Eee~~~Lk~Kle~e~ 493 (964)
.+.|..+=+.+-+++..... ||.-|.+...-++.++.+++.+...++.++.|++...
T Consensus 609 Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~ 666 (717)
T PF10168_consen 609 QEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQ 666 (717)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443434333334444 8888877777777777777777766666666655433
No 116
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=85.48 E-value=52 Score=37.86 Aligned_cols=85 Identities=28% Similarity=0.393 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccchHHHHHHHHH
Q 002118 555 ESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQ-VPESTRPLLRQIEAIQ 633 (964)
Q Consensus 555 e~~lkEaeEre~~L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSss-v~eATrPLLRQIEtLQ 633 (964)
-.-+.+..++...|..++.+||.+|. +++++|.-|..++...+.....+... .+..-..|++|+|.++
T Consensus 71 a~lL~~sre~Nk~L~~Ev~~Lrqkl~-----------E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~ 139 (319)
T PF09789_consen 71 AQLLSESREQNKKLKEEVEELRQKLN-----------EAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLR 139 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 34445556666678888889988883 57788888877777666555544433 3355667999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 634 ETTARRAEAWAAVERSLNLRLQEA 657 (964)
Q Consensus 634 aQ~asqsenWe~iE~sL~~RLaea 657 (964)
.++.. +|+.|.+-+.+.
T Consensus 140 ~q~~q-------Le~d~qs~lDEk 156 (319)
T PF09789_consen 140 EQIEQ-------LERDLQSLLDEK 156 (319)
T ss_pred HHHHH-------HHHHHHHHHHHH
Confidence 88764 455554444443
No 117
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=85.42 E-value=1.4 Score=46.37 Aligned_cols=84 Identities=25% Similarity=0.278 Sum_probs=36.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 002118 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELR 936 (964)
Q Consensus 857 A~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEELr 936 (964)
..|..++.++......|+.|+..+..|..+|..|..++.++. +.+..|..++..|+-.| .-|.
T Consensus 102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~---k~~e~l~DE~~~L~l~~--------------~~~e 164 (194)
T PF08614_consen 102 DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKN---KANEILQDELQALQLQL--------------NMLE 164 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--------------HHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--------------HHHH
Confidence 344444444555555555555555555554444443333222 22344444444444333 2233
Q ss_pred HhHHHHHHHHHHHHHHHHhhc
Q 002118 937 ADIMDLKEMYREQVNLLVNKV 957 (964)
Q Consensus 937 aDL~DVKeMYR~QID~LLkQi 957 (964)
.-+..++.=++.+|+++|...
T Consensus 165 ~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 165 EKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777787777654
No 118
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=85.17 E-value=1.3e+02 Score=38.88 Aligned_cols=112 Identities=20% Similarity=0.247 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCccch
Q 002118 551 RAELESRLREAGERETMLVQALEELRQTLS---RTEQQAVFREDMLRRDIEDLQR---RYQASERRCEELVTQVPESTRP 624 (964)
Q Consensus 551 ~~~Le~~lkEaeEre~~L~qqIedLRe~Le---Raeq~a~~rEeeLR~Eis~Le~---RLEeaEsRaEELSssv~eATrP 624 (964)
...+++...++......++.++.+|.-.+. |..+.++.-.+.||.|...|.. .++.+....+++
T Consensus 346 ~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~---------- 415 (980)
T KOG0980|consen 346 KAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEA---------- 415 (980)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------
Confidence 344455555566666677778888777775 4555566666677777666532 222222112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 625 LLRQIEAIQETTARRAEAWAAV---ERSLNLRLQEAEAKAAASEERERSVNE 673 (964)
Q Consensus 625 LLRQIEtLQaQ~asqsenWe~i---E~sL~~RLaeaE~~l~~A~eREr~~~e 673 (964)
.+++-+.+.+|..=.+....+ =.-|..+.++..+++..+...--++.+
T Consensus 416 -e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~ 466 (980)
T KOG0980|consen 416 -ENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEE 466 (980)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 223333444443333332222 235677777777777666554333333
No 119
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=85.01 E-value=71 Score=35.79 Aligned_cols=42 Identities=31% Similarity=0.324 Sum_probs=33.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 620 ESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERE 668 (964)
Q Consensus 620 eATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eRE 668 (964)
...|.||.|++.+.+..+. +|++-..++..++..+.+..+++
T Consensus 38 ~~Vr~lLqqy~~~~~~i~~-------le~~~~~~l~~ak~eLqe~eek~ 79 (258)
T PF15397_consen 38 LKVRKLLQQYDIYRTAIDI-------LEYSNHKQLQQAKAELQEWEEKE 79 (258)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHccChHHHHHHHHHHHHHHHHH
Confidence 4468899999988776654 88888999999999888777763
No 120
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=84.98 E-value=59 Score=34.80 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 641 EAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTK 701 (964)
Q Consensus 641 enWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~ 701 (964)
.-+++-+..|-.-|.--....+....+=|...++.+.+..+++..+.++..++..+..|..
T Consensus 50 ~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~ 110 (194)
T PF15619_consen 50 QKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKK 110 (194)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555554444444444444555555555555555555555444443
No 121
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.92 E-value=77 Score=40.19 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 667 RERSVNERLSQTLSRINVLEAQISCLRAEQTQ 698 (964)
Q Consensus 667 REr~~~ekl~e~~~ri~~LE~els~lR~e~~~ 698 (964)
.|+.|.+.+..+..++..+...+..++.....
T Consensus 633 AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 633 AEREFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666665555555555554444433
No 122
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=84.29 E-value=66 Score=34.86 Aligned_cols=59 Identities=24% Similarity=0.349 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 589 REDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKA 661 (964)
Q Consensus 589 rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l 661 (964)
-|+-|+.-+.++..|+...+.|.+-|-.-+ -+.+..+...|..+.+...+.+..++..+
T Consensus 112 NEE~Lkk~~~ey~~~l~~~eqry~aLK~hA--------------eekL~~ANeei~~v~~~~~~e~~aLqa~l 170 (207)
T PF05010_consen 112 NEETLKKCIEEYEERLKKEEQRYQALKAHA--------------EEKLEKANEEIAQVRSKHQAELLALQASL 170 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 578888888888888888888887776521 24555677777777777766666655554
No 123
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.91 E-value=21 Score=38.40 Aligned_cols=39 Identities=15% Similarity=0.271 Sum_probs=20.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 622 TRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAK 660 (964)
Q Consensus 622 TrPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~ 660 (964)
+.++--++..||.++......-..+..++.++.++++..
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~ 126 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQK 126 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 556666666666666655544444444444444444443
No 124
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=83.77 E-value=1.5e+02 Score=38.44 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002118 400 TLREEYHQRVATLERKVYALTK 421 (964)
Q Consensus 400 ~L~eEy~qRI~ALErKlQ~L~K 421 (964)
...+.+.+++..|+.-...+.+
T Consensus 232 ~e~e~l~~~~~el~~~~~~~~~ 253 (908)
T COG0419 232 QEIEALEERLAELEEEKERLEE 253 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555554444
No 125
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=83.41 E-value=1.3e+02 Score=37.49 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 722 EEADTQEGRANQLEEEIKELRRKHKQ 747 (964)
Q Consensus 722 eE~~~le~r~~qLEeeL~elr~k~~~ 747 (964)
+++..--..++.++.+++.+..++.+
T Consensus 505 ~eI~KIl~DTr~lQkeiN~l~gkL~R 530 (594)
T PF05667_consen 505 EEIEKILSDTRELQKEINSLTGKLDR 530 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444455566666665555544
No 126
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=83.21 E-value=95 Score=39.42 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHH
Q 002118 398 LETLREEYHQRVAT------LERKVYALTKER 423 (964)
Q Consensus 398 ~~~L~eEy~qRI~A------LErKlQ~L~KEr 423 (964)
++.|++||-+||++ |-.|+..|..+-
T Consensus 513 ~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~ 544 (762)
T PLN03229 513 IEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFS 544 (762)
T ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHHH
Confidence 88899999999997 778887775444
No 127
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=82.66 E-value=1.2e+02 Score=38.43 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 630 EAIQETTARRAEAWAAVERSLNLRLQEAEAKAA 662 (964)
Q Consensus 630 EtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~ 662 (964)
|-||-.+.....+-+.+|+ |.+-+..+.++++
T Consensus 202 ErlqlhlkermaAle~kn~-L~~e~~s~kk~l~ 233 (916)
T KOG0249|consen 202 ERLQLHLKERMAALEDKNR-LEQELESVKKQLE 233 (916)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 7777766666666666554 3333444444443
No 128
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.48 E-value=14 Score=38.89 Aligned_cols=71 Identities=25% Similarity=0.329 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 675 LSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKH 745 (964)
Q Consensus 675 l~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er~r~~~~r~e~~aakeE~~~le~r~~qLEeeL~elr~k~ 745 (964)
+.....++..++.++..++.++.++...|..-..-.....++|.+..-++..++.++..++.+-.+|=.+|
T Consensus 111 ~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 111 LSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456666666666666666666666544444455566666666677777777777776666655444
No 129
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=81.85 E-value=2e+02 Score=38.51 Aligned_cols=90 Identities=7% Similarity=0.050 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 592 MLRRDIEDLQRRYQASERRCEELVTQVPE--STRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERER 669 (964)
Q Consensus 592 eLR~Eis~Le~RLEeaEsRaEELSssv~e--ATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eREr 669 (964)
.++..+.+.-..++.+..+.+.+...... ++.| +.|+|..-.+...+-..|+......++|+.++...+...-+...
T Consensus 69 ~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s-~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~ 147 (1109)
T PRK10929 69 QYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMS-TDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQT 147 (1109)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhhcccccccccCC-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHH
Confidence 34444444444444444444433322221 2222 48888888888888999999999999999776665533333334
Q ss_pred HHHHHHHHHHHHH
Q 002118 670 SVNERLSQTLSRI 682 (964)
Q Consensus 670 ~~~ekl~e~~~ri 682 (964)
+++.++.++..++
T Consensus 148 ~~~~~l~~i~~~L 160 (1109)
T PRK10929 148 EARRQLNEIERRL 160 (1109)
T ss_pred HHHHHHHHHHHHH
Confidence 4444455444333
No 130
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=80.96 E-value=2e+02 Score=37.99 Aligned_cols=141 Identities=28% Similarity=0.376 Sum_probs=99.2
Q ss_pred ccHHHHHHHHHHHHH---HHHHHHHHHHH------HHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q 002118 339 DSVCELEKLKREMKM---METALQGAARQ------AQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRV 409 (964)
Q Consensus 339 ~~~~e~ekl~~~~~~---~~~~l~~~~r~------~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI 409 (964)
|-..|++||++++.- .+.+|..-.|. .+.++.+|-+|..+.+++..++..+...- .....++.....+.
T Consensus 408 d~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~--~~~~~~~~~l~~~~ 485 (1041)
T KOG0243|consen 408 DLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELY--MNQLEIKELLKEEK 485 (1041)
T ss_pred HHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHH
Confidence 456789999988753 34444432232 55667777777777777777777776654 22334567777999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002118 410 ATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKL 489 (964)
Q Consensus 410 ~ALErKlQ~L~KErD~Lrke~ak~s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~Lk~Kl 489 (964)
..++++|+.-+++...++.+..+ +...|++++++|.++-.=-.+|... -.+||..+.+....+..|-.|+
T Consensus 486 ~~~k~~L~~~~~el~~~~ee~~~---~~~~l~~~e~ii~~~~~se~~l~~~-------a~~l~~~~~~s~~d~s~l~~kl 555 (1041)
T KOG0243|consen 486 EKLKSKLQNKNKELESLKEELQQ---AKATLKEEEEIISQQEKSEEKLVDR-------ATKLRRSLEESQDDLSSLFEKL 555 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999877776543 4557999999999876544444443 5678888888777777776655
Q ss_pred HH
Q 002118 490 QV 491 (964)
Q Consensus 490 e~ 491 (964)
..
T Consensus 556 d~ 557 (1041)
T KOG0243|consen 556 DR 557 (1041)
T ss_pred hh
Confidence 53
No 131
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=80.39 E-value=1.8e+02 Score=37.27 Aligned_cols=115 Identities=24% Similarity=0.392 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH----------HHHHHHHHHHHHHHHHHHHH
Q 002118 631 AIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEE-----------RER----------SVNERLSQTLSRINVLEAQI 689 (964)
Q Consensus 631 tLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~e-----------REr----------~~~ekl~e~~~ri~~LE~el 689 (964)
.++......+.-|+.+-.-|-.+|.++.++++.+.- |+. .+.-.+..+..|+..+|-++
T Consensus 71 ~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken 150 (769)
T PF05911_consen 71 KIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKEN 150 (769)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666666665533322 111 11224456677888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 002118 690 SCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEG--RANQLEEEIKELRRKHKQ 747 (964)
Q Consensus 690 s~lR~e~~~Lq~qLE~Er~r~~~~r~e~~aakeE~~~le~--r~~qLEeeL~elr~k~~~ 747 (964)
..|+.++.-++..|+-.-....-++....++ --.+++. ++..||.++.-||.=.++
T Consensus 151 ~~Lkye~~~~~keleir~~E~~~~~~~ae~a--~kqhle~vkkiakLEaEC~rLr~l~rk 208 (769)
T PF05911_consen 151 SSLKYELHVLSKELEIRNEEREYSRRAAEAA--SKQHLESVKKIAKLEAECQRLRALVRK 208 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999988888875322222222222222 1122332 467788888777765543
No 132
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.96 E-value=26 Score=39.87 Aligned_cols=83 Identities=24% Similarity=0.323 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHH
Q 002118 866 LASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEM 945 (964)
Q Consensus 866 la~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEELraDL~DVKeM 945 (964)
+..+..++..++.+...+..||-.|..+.+++..+ +..|+.+..+|+..-......|-...=+.-++..+...|+..
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~e---l~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q 121 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQE---LEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQ 121 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444555554444444444433 233333333333333333333333333333444555556555
Q ss_pred HHHHHH
Q 002118 946 YREQVN 951 (964)
Q Consensus 946 YR~QID 951 (964)
|.-.-+
T Consensus 122 ~~~~~~ 127 (314)
T PF04111_consen 122 YEYASN 127 (314)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 133
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=79.26 E-value=1.1e+02 Score=33.99 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 591 DMLRRDIEDLQRRYQASERRCEELV 615 (964)
Q Consensus 591 eeLR~Eis~Le~RLEeaEsRaEELS 615 (964)
+.|+++++.++..+++++.|..-+.
T Consensus 55 e~le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 55 EDLENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777776665544433
No 134
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=77.99 E-value=28 Score=35.70 Aligned_cols=84 Identities=23% Similarity=0.411 Sum_probs=56.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccc---hhHHH
Q 002118 859 LRQKEGELASYMSRLASMESIRDSLAEELVKMTAQ--CEKLRAEAAILPGIQAELDALRRRHSAALELMGER---DEELE 933 (964)
Q Consensus 859 LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e--~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEK---sEeVE 933 (964)
+..++.++..|+.++..|...-..|..||-.|... ++++... +..|+.++..|..|...+=. |-+ .++++
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~---i~~l~~e~~~l~~kL~~l~~--~~~~vs~ee~~ 148 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREE---IEELEEEIEELEEKLEKLRS--GSKPVSPEEKE 148 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHh--CCCCCCHHHHH
Confidence 56667778888888888888888888888888874 3555544 77778888888888776655 222 34444
Q ss_pred HHHHhHHHHHHHHH
Q 002118 934 ELRADIMDLKEMYR 947 (964)
Q Consensus 934 ELraDL~DVKeMYR 947 (964)
.+......+..+|+
T Consensus 149 ~~~~~~~~~~k~w~ 162 (169)
T PF07106_consen 149 KLEKEYKKWRKEWK 162 (169)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 135
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=77.52 E-value=2.5e+02 Score=37.17 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHH
Q 002118 872 RLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEMYREQV 950 (964)
Q Consensus 872 ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEELraDL~DVKeMYR~QI 950 (964)
+++.++..+..|...|.-++.+++.++- .++.++.++ ++|+..+.++|.+.= +++-+|.+...-.+.+.
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k~---~l~~~~~El----~~~~~~i~~~~p~i~---~i~r~l~~~e~~~~~L~ 745 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLKR---SLEQNELEL----QRTESEIDEFGPEIS---EIKRKLQNREGEMKELE 745 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHhhCchHH---HHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555541 233333222 467777778887765 55556666554444433
No 136
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=77.04 E-value=13 Score=44.62 Aligned_cols=74 Identities=24% Similarity=0.271 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hhhhhHHHHHHHHHHHHHHHHHHh
Q 002118 864 GELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEA------------------AILPGIQAELDALRRRHSAALELM 925 (964)
Q Consensus 864 GEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~------------------~~v~~Le~el~eLqqRY~TlLEMl 925 (964)
..+..++.+|+....+=...-+|+.+|++++-.+..+. ..-..|..++.+|+.||.-.++|+
T Consensus 212 ~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~ 291 (596)
T KOG4360|consen 212 TQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQML 291 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555444443 334567788999999999999999
Q ss_pred ccchhHHHHHHH
Q 002118 926 GERDEELEELRA 937 (964)
Q Consensus 926 GEKsEeVEELra 937 (964)
-|-.|++..||-
T Consensus 292 ~EaeeELk~lrs 303 (596)
T KOG4360|consen 292 HEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHhhcc
Confidence 999999999885
No 137
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=76.67 E-value=52 Score=37.54 Aligned_cols=94 Identities=29% Similarity=0.479 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 343 ELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKE 422 (964)
Q Consensus 343 e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KE 422 (964)
-+..|+-.+.+++.-+..|-..-.-+--+++.|+=+.|-|++.++++. ..+..+..+|-+.+.++|+- .+.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~e-----E~~~~~~re~~eK~~elEr~----K~~ 148 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELE-----ETLAQLQREYREKIRELERQ----KRA 148 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH----HHH
Confidence 455668888888888887732222233488888888888988888754 34556777776666665542 222
Q ss_pred HHHHHHHHhhhhHHHHHHhhHHHHHH
Q 002118 423 RDTLRREQNKKSDAAALLKEKDEIIN 448 (964)
Q Consensus 423 rD~Lrke~ak~s~~~a~LkEKDEqIa 448 (964)
.|.|+.+. ..+...|+++|+.|.
T Consensus 149 ~d~L~~e~---~~Lre~L~~rdeli~ 171 (302)
T PF09738_consen 149 HDSLREEL---DELREQLKQRDELIE 171 (302)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHH
Confidence 33333332 345567788888884
No 138
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=76.13 E-value=53 Score=30.00 Aligned_cols=68 Identities=22% Similarity=0.301 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 002118 341 VCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVY 417 (964)
Q Consensus 341 ~~e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ 417 (964)
+..+++|-..|..+-..+.. +..++.+|.+.|..|..++..|+... ..+..-+..+..||.+|=.|+.
T Consensus 3 ~E~l~~LE~ki~~aveti~~-------Lq~e~eeLke~n~~L~~e~~~L~~en--~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 3 LELLEQLEEKIQQAVETIAL-------LQMENEELKEKNNELKEENEELKEEN--EQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhh
Confidence 34566666666655555553 33455555555555544444444432 2222345666788888766654
No 139
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.00 E-value=44 Score=36.04 Aligned_cols=35 Identities=6% Similarity=0.311 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 627 RQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKA 661 (964)
Q Consensus 627 RQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l 661 (964)
+|+..|+.+++.....|...-..|..+++.+....
T Consensus 100 ~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 134 (206)
T PRK10884 100 NQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVI 134 (206)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777888888888888888755553
No 140
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.21 E-value=42 Score=30.73 Aligned_cols=53 Identities=28% Similarity=0.444 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 552 AELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELV 615 (964)
Q Consensus 552 ~~Le~~lkEaeEre~~L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELS 615 (964)
..|+.+++.+-+-+..|+.+|++|+++-. .|-.|.++++...++++.+++.+.
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn-----------~l~~e~q~~q~~reaL~~eneqlk 59 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNN-----------SLSQEVQNAQHQREALERENEQLK 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666667777777766542 244555555555555555555443
No 141
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=75.05 E-value=2.4e+02 Score=35.76 Aligned_cols=92 Identities=23% Similarity=0.316 Sum_probs=59.8
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHhhHHHHHHHHHHHhHHhhHH
Q 002118 382 LKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQN-KKSDAAALLKEKDEIINQVMAEGEELSKK 460 (964)
Q Consensus 382 L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KErD~Lrke~a-k~s~~~a~LkEKDEqIaqLmeEGEKLSKk 460 (964)
.+.+++.+.+.+ ...+..|+..|-.-++.|-+|..-|.+....+-.... -.+.++..-+|.|..-.+|-.-|+.|..
T Consensus 138 ~q~ELee~q~~H-qeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~- 215 (739)
T PF07111_consen 138 SQRELEEAQRLH-QEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEA- 215 (739)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-
Confidence 355666666655 5889999999999999999999988886654422111 1234455666777666665444444433
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002118 461 QAAQEAQIRKLRAQIREL 478 (964)
Q Consensus 461 ELq~sniIKKLRakikE~ 478 (964)
+.+.+-.||..|.+.
T Consensus 216 ---q~tlv~~LR~YvGeq 230 (739)
T PF07111_consen 216 ---QVTLVEQLRKYVGEQ 230 (739)
T ss_pred ---HHHHHHHHHHHHhhh
Confidence 223478888887664
No 142
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=74.70 E-value=2.1e+02 Score=34.92 Aligned_cols=30 Identities=20% Similarity=0.493 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 395 DAELETLREEYHQRVATLERKVYALTKERD 424 (964)
Q Consensus 395 ~~~~~~L~eEy~qRI~ALErKlQ~L~KErD 424 (964)
..+...+-..+..+|.+|.++|..+....+
T Consensus 246 ~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~ 275 (582)
T PF09731_consen 246 ESDLNSLIAHAKERIDALQKELAELKEEEE 275 (582)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788888899999888876655443
No 143
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=74.67 E-value=1.6e+02 Score=33.63 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002118 646 VERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENR 714 (964)
Q Consensus 646 iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er~r~~~~r 714 (964)
.|..|..+|..+++.+..+..-. ..+.++.++...+..+-.+...+..++..|..+...+.+.+.++.
T Consensus 132 ~E~~lvq~I~~L~k~le~~~k~~-e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~ 199 (294)
T COG1340 132 EERELVQKIKELRKELEDAKKAL-EENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLF 199 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888777776554332 234445555555555555566666666666555555544444433
No 144
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=73.99 E-value=68 Score=33.21 Aligned_cols=93 Identities=23% Similarity=0.337 Sum_probs=45.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 002118 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELR 936 (964)
Q Consensus 857 A~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEELr 936 (964)
.++.++..|+..++..+..+...=..+....-.+. +.++....++..+...+.++...+.-+...+.+--+.+++++
T Consensus 88 ~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 164 (191)
T PF04156_consen 88 QQLQQLQEELDQLQERIQELESELEKLKEDLQELR---ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELR 164 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333333333333333 222333344555555555555555555545555556666666
Q ss_pred HhHHHHHHHHHHHHHH
Q 002118 937 ADIMDLKEMYREQVNL 952 (964)
Q Consensus 937 aDL~DVKeMYR~QID~ 952 (964)
-.+.++..-|..+.+.
T Consensus 165 ~~~~~~~~~~~~l~~~ 180 (191)
T PF04156_consen 165 SQLERLQENLQQLEEK 180 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666655543
No 145
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.69 E-value=24 Score=39.17 Aligned_cols=76 Identities=22% Similarity=0.324 Sum_probs=53.5
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh--HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Q 002118 335 SVSADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMN--ENEHLKAVIEDLKRKTNDAELETLREEYHQRVATL 412 (964)
Q Consensus 335 ~~s~~~~~e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e--~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~AL 412 (964)
.++-|.|+-+.+|+.||..|..-|----..+..|-++|..|-- +|+ ..+..-.-+|++.|
T Consensus 218 ~~~~dh~V~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad~e~~------------------~~~ek~Hke~v~qL 279 (305)
T KOG3990|consen 218 RDPGDHMVKIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKADKEYQ------------------KELEKKHKERVQQL 279 (305)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcchhHH------------------HHHHHHHHHHHHHH
Confidence 3455899999999999999998876544444555555555421 121 12233345889999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002118 413 ERKVYALTKERDTLRR 428 (964)
Q Consensus 413 ErKlQ~L~KErD~Lrk 428 (964)
.+|...+.|+.++|++
T Consensus 280 ~~k~~~~lk~~a~l~~ 295 (305)
T KOG3990|consen 280 QKKKEESLKAIAQLRN 295 (305)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999884
No 146
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=73.64 E-value=52 Score=35.32 Aligned_cols=66 Identities=23% Similarity=0.325 Sum_probs=46.3
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHHHHHhccc-----------------------chHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 363 RQAQAKADEIAKMMNENEHLKAVIEDLKRKT-----------------------NDAELETLREEYHQRVATLERKVYAL 419 (964)
Q Consensus 363 r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~-----------------------~~~~~~~L~eEy~qRI~ALErKlQ~L 419 (964)
|++|-..-+|-.|.+.|.-|+.++.+|+.-. +..-+..--..|.++|..||.|.+.|
T Consensus 48 rrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L 127 (195)
T PF10226_consen 48 RRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEEL 127 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888888888888888777776531 01112223346888888888888888
Q ss_pred HHHHHHHHH
Q 002118 420 TKERDTLRR 428 (964)
Q Consensus 420 ~KErD~Lrk 428 (964)
++|...||-
T Consensus 128 ~rEN~eLKE 136 (195)
T PF10226_consen 128 IRENLELKE 136 (195)
T ss_pred HHhHHHHHH
Confidence 888886653
No 147
>PRK11281 hypothetical protein; Provisional
Probab=72.13 E-value=3.5e+02 Score=36.32 Aligned_cols=73 Identities=19% Similarity=0.184 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhc---CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 603 RYQASERRCEELVTQ---VPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERL 675 (964)
Q Consensus 603 RLEeaEsRaEELSss---v~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl 675 (964)
|++++|.+.+++... ....+-||+.+.-..=.+|+..=..=..-=..|.++.......++.+.+-++.+++++
T Consensus 254 r~~~se~~~~~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi 329 (1113)
T PRK11281 254 RLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQI 329 (1113)
T ss_pred HHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444221 1123457776654443333333222222223344445555555555555555555544
No 148
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.29 E-value=1.8e+02 Score=32.76 Aligned_cols=145 Identities=17% Similarity=0.290 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 344 LEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKT--NDAELETLREEYHQRVATLERKVYALTK 421 (964)
Q Consensus 344 ~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~--~~~~~~~L~eEy~qRI~ALErKlQ~L~K 421 (964)
+.+--..++.++....+++-+++++-.+|-.++...+.++.+|..++..- -..+|..+++--.+|=.-|..++..+-.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666778888888888888888888888888777777777777665532 2233444443333332222222211100
Q ss_pred H------HHHHHH------HHhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002118 422 E------RDTLRR------EQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTK 488 (964)
Q Consensus 422 E------rD~Lrk------e~ak~s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~Lk~K 488 (964)
- .|.+=. =+.+.+.+..++.==-.+|.++.+.-..|+.++-.....+.+|-+-..+++..+..|..+
T Consensus 113 nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~q 191 (265)
T COG3883 113 NGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQ 191 (265)
T ss_pred cCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000 000111122233333346777888888899988888888888888888888877777653
No 149
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=71.14 E-value=35 Score=31.07 Aligned_cols=65 Identities=22% Similarity=0.334 Sum_probs=48.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHH
Q 002118 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAA----ILPGIQAELDALRRRH 918 (964)
Q Consensus 854 ~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~----~v~~Le~el~eLqqRY 918 (964)
.|...|+-+|-.|++|+.|-..|..+--.++.-|-+|...+.++...+. ++..+...+..|+.|+
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667889999999999999999999999999998888887777765542 2344444455555554
No 150
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=70.82 E-value=46 Score=30.36 Aligned_cols=61 Identities=15% Similarity=0.360 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 623 RPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQIS 690 (964)
Q Consensus 623 rPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els 690 (964)
.-||-=+|.||..|..+-..|+.-=..|.. ....+.+++..++.+...+..++..|.+++.
T Consensus 6 ~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~-------~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~ 66 (70)
T PF04899_consen 6 KQLLSALEELQQSYEKQQQEWQSSYADLQH-------MFEQTSQENAALSEQVNNLSQQVQRLSEQLE 66 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777999999999999999987555544 4444555555555555555555555544443
No 151
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=70.34 E-value=1.7e+02 Score=32.10 Aligned_cols=71 Identities=24% Similarity=0.330 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 407 QRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLV 486 (964)
Q Consensus 407 qRI~ALErKlQ~L~KErD~Lrke~ak~s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~Lk 486 (964)
.+|+.++..+..|..+.+.|..+...... .+..|-...+..-..=......|+.++..|.++-..+..+.
T Consensus 45 ~~~~~~e~~l~~L~~d~~~L~~k~~~~~~----------~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~ 114 (264)
T PF06008_consen 45 QQLDPLEKELESLEQDVENLQEKATKVSR----------KAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLN 114 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56777777777777777766555443222 22233344455555555566677888888887777776665
Q ss_pred h
Q 002118 487 T 487 (964)
Q Consensus 487 ~ 487 (964)
.
T Consensus 115 ~ 115 (264)
T PF06008_consen 115 E 115 (264)
T ss_pred c
Confidence 4
No 152
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=70.24 E-value=46 Score=31.08 Aligned_cols=64 Identities=27% Similarity=0.308 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 549 EARAELESRLREAGERETMLVQALEELRQTLSRTEQQ----------AVFREDMLRRDIEDLQRRYQASERRCE 612 (964)
Q Consensus 549 Ea~~~Le~~lkEaeEre~~L~qqIedLRe~LeRaeq~----------a~~rEeeLR~Eis~Le~RLEeaEsRaE 612 (964)
+....|+.++..+-+.+..|+.+|++|+++=....+. ....=..|+.|...++.|+..+=.+.+
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455667777777777777777888887764433332 222345677788888888877655544
No 153
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=69.26 E-value=1.4e+02 Score=32.25 Aligned_cols=21 Identities=33% Similarity=0.325 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002118 627 RQIEAIQETTARRAEAWAAVE 647 (964)
Q Consensus 627 RQIEtLQaQ~asqsenWe~iE 647 (964)
..-|.+=..|..++..|..+|
T Consensus 84 ~~AE~~Y~~F~~Qt~~LA~~e 104 (192)
T PF11180_consen 84 ARAEAIYRDFAQQTARLADVE 104 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777776666
No 154
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=69.14 E-value=26 Score=33.20 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=48.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----hhhhhHHHHHHHHHHHHHHHH
Q 002118 856 ESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQ---CEKLRAEA----AILPGIQAELDALRRRHSAAL 922 (964)
Q Consensus 856 qA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e---~Eelr~~~----~~v~~Le~el~eLqqRY~TlL 922 (964)
-..|..++.+...++.++..|.+.|..++.+|-.++.. .+.+.+++ ..+..++.++.+++.+++.+|
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778889999999999999999999999999984 44554443 235555666666666666554
No 155
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=68.62 E-value=3.9e+02 Score=35.45 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhccchhH
Q 002118 906 GIQAELDALRRRHSAALELMGERDEE 931 (964)
Q Consensus 906 ~Le~el~eLqqRY~TlLEMlGEKsEe 931 (964)
.++..+..+++.++++...+|.-...
T Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~ 851 (1047)
T PRK10246 826 QIQQELAQLAQQLRENTTRQGEIRQQ 851 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 156
>PF13514 AAA_27: AAA domain
Probab=68.51 E-value=4e+02 Score=35.49 Aligned_cols=145 Identities=22% Similarity=0.270 Sum_probs=74.2
Q ss_pred cccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHH-HHHHHHHHHHHHHH
Q 002118 333 NVSVSADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAE-LETLREEYHQRVAT 411 (964)
Q Consensus 333 ~~~~s~~~~~e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~-~~~L~eEy~qRI~A 411 (964)
...++......+..|..+...+...+..+.+++. +.....+.+..++..+........ ...|.. .++...
T Consensus 337 ~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~-------~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~--~~~~~d 407 (1111)
T PF13514_consen 337 ALDPSLAARERIRELLQEREQLEQALAQARRELE-------EAERELEQLQAELAALPAPPDPEALRAALEA--AQRLGD 407 (1111)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhCcccCCChHHHHHHHH--HHhccc
Confidence 4445555566777777777777777776644444 444445555555544444321111 111211 222233
Q ss_pred HHHHHHHHHHHHHHHHHHH-------hhh-hHHHHHH---hhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002118 412 LERKVYALTKERDTLRREQ-------NKK-SDAAALL---KEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEE 480 (964)
Q Consensus 412 LErKlQ~L~KErD~Lrke~-------ak~-s~~~a~L---kEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Ee 480 (964)
+...++.+..+...+++.. ... .++.++. -==.+.|..++.+-..+..........+..++..+...+.
T Consensus 408 ~~~~~~~~~~~~~~~~~~l~~~l~~L~~w~~~~~~l~~~~~P~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (1111)
T PF13514_consen 408 LEARLQEAEQALEAAERRLAAALAALGPWSGDLDALAALPLPSRETVEAFRAEFEELERQLRRARDRLEELEEELARLEA 487 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334433333333332222 111 1111111 1134677777777777777777777777777777776666
Q ss_pred HHHHHH
Q 002118 481 EKKGLV 486 (964)
Q Consensus 481 e~~~Lk 486 (964)
++..|.
T Consensus 488 ~~~~l~ 493 (1111)
T PF13514_consen 488 RLRRLA 493 (1111)
T ss_pred HHHHHH
Confidence 666664
No 157
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=68.42 E-value=43 Score=34.50 Aligned_cols=70 Identities=19% Similarity=0.340 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHH
Q 002118 865 ELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKE 944 (964)
Q Consensus 865 Ela~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEELraDL~DVKe 944 (964)
.+...+.++..+..+|+.+..+|...-.+++.|+....-+..|..++.+|+..|.+. .++.+.+|.+++-
T Consensus 14 ~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~----------~~~~e~~l~~~~~ 83 (155)
T PF06810_consen 14 DIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTA----------KEEYEAKLAQMKK 83 (155)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 345577888888999999999999999999999999899999999999999999763 4566666666654
No 158
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=68.25 E-value=59 Score=40.20 Aligned_cols=12 Identities=25% Similarity=0.446 Sum_probs=5.4
Q ss_pred HHhhHHHHHHHH
Q 002118 439 LLKEKDEIINQV 450 (964)
Q Consensus 439 ~LkEKDEqIaqL 450 (964)
.|.||...|.+|
T Consensus 489 ~L~e~~~~ve~L 500 (652)
T COG2433 489 ELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 159
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=68.15 E-value=3.5e+02 Score=34.78 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=10.5
Q ss_pred HHHHHHHhhhhHHHHHHHH
Q 002118 854 AFESILRQKEGELASYMSR 872 (964)
Q Consensus 854 ~LqA~LRqrEGEla~LQ~E 872 (964)
.|+.-|--+|.-|+-||.-
T Consensus 835 ~f~~glaalda~iarlq~s 853 (861)
T PF15254_consen 835 DFRNGLAALDANIARLQRS 853 (861)
T ss_pred HHHhhHHHhhhhHHHHHHH
Confidence 4555555566555555543
No 160
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=68.09 E-value=85 Score=37.18 Aligned_cols=101 Identities=20% Similarity=0.222 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 569 VQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVER 648 (964)
Q Consensus 569 ~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~iE~ 648 (964)
..++.+++....+.+.........+..|+.-+.+.|++-+-|.+-|-..+-+.|-=-..-|.+|+..++. -|+++++
T Consensus 218 ~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~---~EEK~~Y 294 (395)
T PF10267_consen 218 LEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELAS---MEEKMAY 294 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHH
Confidence 3344455555555555555555556667777777777777666655555555544445556666666654 4555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 649 SLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLE 686 (964)
Q Consensus 649 sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE 686 (964)
....|.. ++.+-+.....|+..+|
T Consensus 295 qs~eRaR--------------di~E~~Es~qtRisklE 318 (395)
T PF10267_consen 295 QSYERAR--------------DIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHh--------------HHHHHHHHHHHHHHHHH
Confidence 5554444 45555556666677776
No 161
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=67.96 E-value=2.9e+02 Score=33.79 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=57.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHHHH
Q 002118 339 DSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKT-NDAELETLREEYHQRVATLERKVY 417 (964)
Q Consensus 339 ~~~~e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~-~~~~~~~L~eEy~qRI~ALErKlQ 417 (964)
|+..-+..++.+++..-..+....++++.+..+...+..+.+-|+.+++++..-. ...+.+.|..+| .||...|+-..
T Consensus 151 D~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~-~~L~n~e~i~~ 229 (563)
T TIGR00634 151 DTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQ-QRLSNLEKLRE 229 (563)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHH-HHHhCHHHHHH
Confidence 3444455677888888888888888888888888899999999999999888842 345555666655 45555554444
Q ss_pred HH
Q 002118 418 AL 419 (964)
Q Consensus 418 ~L 419 (964)
.+
T Consensus 230 ~~ 231 (563)
T TIGR00634 230 LS 231 (563)
T ss_pred HH
Confidence 33
No 162
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=67.84 E-value=47 Score=29.56 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 002118 595 RDIEDLQRRYQASERRCEELVT 616 (964)
Q Consensus 595 ~Eis~Le~RLEeaEsRaEELSs 616 (964)
..+-.+++||++++.|+.+|..
T Consensus 25 ~~n~~~e~kLqeaE~rn~eL~~ 46 (61)
T PF08826_consen 25 SANLAFESKLQEAEKRNRELEQ 46 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666655
No 163
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=67.63 E-value=2.1e+02 Score=34.55 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 668 ERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQ 708 (964)
Q Consensus 668 Er~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er~ 708 (964)
...+..++..+..+++....++...+.....|...+..-+.
T Consensus 377 kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~ 417 (493)
T KOG0804|consen 377 KKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRG 417 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33444556666666666666666666555555544444333
No 164
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=67.54 E-value=80 Score=36.04 Aligned_cols=54 Identities=28% Similarity=0.509 Sum_probs=25.6
Q ss_pred HHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 374 KMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRRE 429 (964)
Q Consensus 374 ~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KErD~Lrke 429 (964)
.|+.++++|..++..+.... ..+...-.+|-.....++..+.....+++.+..+
T Consensus 68 ~LE~e~~~l~~el~~le~e~--~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q 121 (314)
T PF04111_consen 68 ELEKEREELDQELEELEEEL--EELDEEEEEYWREYNELQLELIEFQEERDSLKNQ 121 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443332 2233333455555555555555555555555444
No 165
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=67.42 E-value=1.6e+02 Score=30.50 Aligned_cols=123 Identities=23% Similarity=0.273 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HhHHHHHHHHHHHHhcc--cchHHHHHHHHHHH---HHHHHHHHH
Q 002118 342 CELEKLKREMKMMETALQGAARQAQAKADEIAKM-MNENEHLKAVIEDLKRK--TNDAELETLREEYH---QRVATLERK 415 (964)
Q Consensus 342 ~e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L-~e~N~~L~~~~e~l~~~--~~~~~~~~L~eEy~---qRI~ALErK 415 (964)
.++++++-...-+...+.-...++..+..=.--| ...++||+.++..+..+ ....++..|+.-|. +-|.-.-.|
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keK 85 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEK 85 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667776666666666655444444432211122 24455555555554443 12345555554443 444444455
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Q 002118 416 VYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQ 474 (964)
Q Consensus 416 lQ~L~KErD~Lrke~ak~s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRak 474 (964)
+..+..+.. .+...|..+++.+..+.++-..+-..--+..+.+++||.+
T Consensus 86 l~~~~~~~~----------~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~ 134 (177)
T PF13870_consen 86 LHFLSEELE----------RLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQ 134 (177)
T ss_pred HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555544444 3344566777777777777666666666666666777765
No 166
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=67.18 E-value=1.6e+02 Score=30.47 Aligned_cols=54 Identities=26% Similarity=0.420 Sum_probs=27.3
Q ss_pred HHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 371 EIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTL 426 (964)
Q Consensus 371 ~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KErD~L 426 (964)
++..+.+.+..+...+..++..- .........+.+|+.+++..+..+.++...+
T Consensus 96 el~~l~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 96 ELDQLQERIQELESELEKLKEDL--QELRELLKSVEERLDSLDESIKELEKEIREL 149 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433322 1222445666677777777776666665533
No 167
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=66.70 E-value=58 Score=35.11 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHH
Q 002118 586 AVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAI 632 (964)
Q Consensus 586 a~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtL 632 (964)
..|-|.+|+.|+++|+.+|..++..++.-........+.+=+|.|.|
T Consensus 94 ~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqL 140 (195)
T PF12761_consen 94 TDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQL 140 (195)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHH
Confidence 34667778888888888888766666554222333445555666665
No 168
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=66.34 E-value=1.9e+02 Score=31.02 Aligned_cols=75 Identities=28% Similarity=0.453 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 405 YHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKG 484 (964)
Q Consensus 405 y~qRI~ALErKlQ~L~KErD~Lrke~ak~s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~ 484 (964)
..-.|..++.+++.+..|.-.||.-..+-..+ |..+-.-...|+.--..|.+-|+-||.+++........
T Consensus 17 L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kA----------L~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~ 86 (194)
T PF15619_consen 17 LQNELAELQRKLQELRKENKTLKQLQKRQEKA----------LQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERE 86 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777776644332111 11111112235655667778888888877776666655
Q ss_pred HHhHH
Q 002118 485 LVTKL 489 (964)
Q Consensus 485 Lk~Kl 489 (964)
+..++
T Consensus 87 ~~~kl 91 (194)
T PF15619_consen 87 LERKL 91 (194)
T ss_pred HHHHH
Confidence 55443
No 169
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=66.29 E-value=4.5e+02 Score=35.33 Aligned_cols=26 Identities=8% Similarity=0.032 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 342 CELEKLKREMKMMETALQGAARQAQA 367 (964)
Q Consensus 342 ~e~ekl~~~~~~~~~~l~~~~r~~~~ 367 (964)
.++++...+...+.+.++.+-.++..
T Consensus 58 ~~~~~~~~~~~~~~~~i~~ap~~~~~ 83 (1109)
T PRK10929 58 EERKGSLERAKQYQQVIDNFPKLSAE 83 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45666666666666666666444333
No 170
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=65.92 E-value=2.9e+02 Score=32.93 Aligned_cols=148 Identities=17% Similarity=0.232 Sum_probs=74.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 339 DSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYA 418 (964)
Q Consensus 339 ~~~~e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~ 418 (964)
|++ +-|+++|..|.+.+++- -.+-..+...+..+..+. -.+...++..|-+-++++|.--|.
T Consensus 291 D~~---~~L~k~vQ~L~AQle~~--------------R~q~e~~q~~~~s~~d~~-~~~~~~~qatCERgfAaMEetHQk 352 (593)
T KOG4807|consen 291 DGH---EALEKEVQALRAQLEAW--------------RLQGEAPQSALRSQEDGH-IPPGYISQATCERGFAAMEETHQK 352 (593)
T ss_pred cch---HHHHHHHHHHHHHHHHH--------------HHhccCchhhHhhhhhcc-CCccHHHHHHHHhhHHHHHHHHHH
Confidence 555 45677899999888853 112233444444444443 244556666666777777766654
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHH
Q 002118 419 LTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVES 498 (964)
Q Consensus 419 L~KErD~Lrke~ak~s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~Lk~Kle~e~~k~es 498 (964)
.+.+. .++.. -.+.++-.|||-.++. |.-. +. ..|..+. +.-+..++.++.+..+
T Consensus 353 kiEdL---QRqHq--RELekLreEKdrLLAE---ETAA---Ti----SAIEAMK----------nAhrEEmeRELeKsqS 407 (593)
T KOG4807|consen 353 KIEDL---QRQHQ--RELEKLREEKDRLLAE---ETAA---TI----SAIEAMK----------NAHREEMERELEKSQS 407 (593)
T ss_pred HHHHH---HHHHH--HHHHHHHHHHHhhhhh---hhhh---hh----HHHHHHH----------HHHHHHHHHHHHhhhc
Confidence 43322 22221 1233444455543332 2111 11 1111111 0111123333334334
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 002118 499 IKRDKTATEKLLQETIEKHQVELGEQKDYYT 529 (964)
Q Consensus 499 ~kr~~~a~EK~lqe~iek~q~eL~aqk~~~~ 529 (964)
+...-.++.+...+.+...+.+|.-+...|.
T Consensus 408 vnsdveaLRrQyleelqsvqRELeVLSEQYS 438 (593)
T KOG4807|consen 408 VNSDVEALRRQYLEELQSVQRELEVLSEQYS 438 (593)
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666777778888888888877776
No 171
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=65.78 E-value=2.8e+02 Score=35.13 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 002118 625 LLRQIEAIQETTAR 638 (964)
Q Consensus 625 LLRQIEtLQaQ~as 638 (964)
++.||..|++|+..
T Consensus 309 ~l~~~~~l~~ql~~ 322 (726)
T PRK09841 309 VLEQIVNVDNQLNE 322 (726)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455444444433
No 172
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=65.71 E-value=83 Score=34.70 Aligned_cols=100 Identities=20% Similarity=0.216 Sum_probs=70.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 002118 855 FESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEE 934 (964)
Q Consensus 855 LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEE 934 (964)
....+..++.++..++.+-..|+..|..+..++-+|..+....... -..|..++.+++..-..+-+=.-.|..+++.
T Consensus 31 ~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eE---k~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~ 107 (246)
T PF00769_consen 31 SEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEE---KEQLEQELREAEAEIARLEEESERKEEEAEE 107 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888888899999999988888888766665433 4557888888888777777777889999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhc
Q 002118 935 LRADIMDLKEMYREQVNLLVNKV 957 (964)
Q Consensus 935 LraDL~DVKeMYR~QID~LLkQi 957 (964)
|+.++..++.....--..|+.-+
T Consensus 108 lq~el~~ar~~~~~ak~~L~~~~ 130 (246)
T PF00769_consen 108 LQEELEEAREDEEEAKEELLEVM 130 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888777776664443
No 173
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=65.39 E-value=3.9e+02 Score=34.25 Aligned_cols=79 Identities=20% Similarity=0.368 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHH------
Q 002118 878 SIRDSLAEELVKMTAQCEKLRAEAAILPGI--------QAELDALRRRHSAALELMGERDEELEELRADIMDLK------ 943 (964)
Q Consensus 878 ~qRdeL~eELV~Lt~e~Eelr~~~~~v~~L--------e~el~eLqqRY~TlLEMlGEKsEeVEELraDL~DVK------ 943 (964)
.-...+-+||++|-.=+-..++.++-+..+ +.-|.-|..+|+.==-|. +|-..-||..|.-+|
T Consensus 583 ~d~e~l~eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvALanLKsKYE~EK~~v---~etm~kLRnELK~LKEDAATF 659 (717)
T PF09730_consen 583 KDKEELQEQILKLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMV---SETMMKLRNELKALKEDAATF 659 (717)
T ss_pred ccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH---HHHHHHHHHHHHHHHHHHHHH
Confidence 344556678888877666666554333222 344667888887533333 345555665555555
Q ss_pred ----HH-------HHHHHHHHHhhccC
Q 002118 944 ----EM-------YREQVNLLVNKVIL 959 (964)
Q Consensus 944 ----eM-------YR~QID~LLkQi~~ 959 (964)
.| |-+|+|+|=+|+.+
T Consensus 660 sSlRamFa~RCdEYvtQldemqrqL~a 686 (717)
T PF09730_consen 660 SSLRAMFAARCDEYVTQLDEMQRQLAA 686 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 67788888777754
No 174
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=64.67 E-value=3.6e+02 Score=33.63 Aligned_cols=51 Identities=10% Similarity=0.152 Sum_probs=27.1
Q ss_pred HHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002118 437 AALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVT 487 (964)
Q Consensus 437 ~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~Lk~ 487 (964)
.+.+.+-+..|..+..+-+.+..+...+.+.++.+++++.+++..+....+
T Consensus 208 ~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG 258 (650)
T TIGR03185 208 LSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG 258 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344555555555555555555555555555555555555555554444433
No 175
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=64.51 E-value=3.3e+02 Score=33.12 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 626 LRQIEAIQETTARRAEAWAAVERSL 650 (964)
Q Consensus 626 LRQIEtLQaQ~asqsenWe~iE~sL 650 (964)
++++..++.++.....+.+..+..|
T Consensus 213 l~~~~e~~~~l~l~~~~~~~~~~el 237 (511)
T PF09787_consen 213 LRESGELQEQLELLKAEGESEEAEL 237 (511)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4455555555555555555555555
No 176
>PRK11519 tyrosine kinase; Provisional
Probab=63.98 E-value=3e+02 Score=34.77 Aligned_cols=15 Identities=40% Similarity=0.519 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 002118 568 LVQALEELRQTLSRT 582 (964)
Q Consensus 568 L~qqIedLRe~LeRa 582 (964)
|..++..++.+|+.+
T Consensus 272 L~~ql~~l~~~L~~a 286 (719)
T PRK11519 272 LAQQLPEVRSRLDVA 286 (719)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 177
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.27 E-value=4.8e+02 Score=34.62 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 596 DIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNL 652 (964)
Q Consensus 596 Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~ 652 (964)
+..-+...++.+....+++-+ ||...+..+......-..||+.+..
T Consensus 735 e~~~~~~~~~~~~e~v~e~~~-----------~Ike~~~~~k~~~~~i~~lE~~~~d 780 (1174)
T KOG0933|consen 735 EFHKLLDDLKELLEEVEESEQ-----------QIKEKERALKKCEDKISTLEKKMKD 780 (1174)
T ss_pred hHhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333444444555555555555 6666666666666667777776653
No 178
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=63.09 E-value=4.2e+02 Score=33.83 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 624 PLLRQIEAIQETTARRAEAWAAVERSLNLRLQE 656 (964)
Q Consensus 624 PLLRQIEtLQaQ~asqsenWe~iE~sL~~RLae 656 (964)
.+.--|-.|+.+...-+.+-.+++..|..+-.-
T Consensus 521 ~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~ 553 (698)
T KOG0978|consen 521 KLELKIGKLEEQERGLTSNESKLIKELTTLTQS 553 (698)
T ss_pred HHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHH
Confidence 334445556666666566655555555444433
No 179
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=62.67 E-value=4.1e+02 Score=33.57 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcc---chHHHHHHHHHHHHH
Q 002118 596 DIEDLQRRYQASERRCEELVTQVPEST---RPLLRQIEAIQETTA 637 (964)
Q Consensus 596 Eis~Le~RLEeaEsRaEELSssv~eAT---rPLLRQIEtLQaQ~a 637 (964)
-|.+|..++..++.+.-+++...++.. +-|-+||+.|+.++.
T Consensus 289 ~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~ 333 (754)
T TIGR01005 289 LIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIR 333 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666533322 223446666665543
No 180
>PF13514 AAA_27: AAA domain
Probab=62.66 E-value=5e+02 Score=34.59 Aligned_cols=51 Identities=25% Similarity=0.337 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHH
Q 002118 589 REDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAA 645 (964)
Q Consensus 589 rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~ 645 (964)
....++..+..+...+..++.+...+..+.+-.| -+.|...-..+-..|..
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~t------~~~l~~aR~~Rd~~W~~ 517 (1111)
T PF13514_consen 467 QLRRARDRLEELEEELARLEARLRRLAAAGDVPT------EEELAAARARRDAAWQL 517 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHHHhcc
Confidence 3444556666777777777777777777632222 46677777788888877
No 181
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=62.48 E-value=3.7e+02 Score=33.06 Aligned_cols=135 Identities=19% Similarity=0.236 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH------------------Hhcccc---hH---HHHHH----HH
Q 002118 352 KMMETALQGAARQAQAKADEIAKMMNENEHLKAVIED------------------LKRKTN---DA---ELETL----RE 403 (964)
Q Consensus 352 ~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~------------------l~~~~~---~~---~~~~L----~e 403 (964)
-..+-.|+.|||-=|++-+.+..|++.|.-|-.+++. |+-.+. ++ .+.+. -+
T Consensus 72 e~k~~dlElaAkiGqsllk~nk~Lq~~nesLeEqv~~~~d~vvql~hels~k~ellr~ys~~~ees~~~~v~~~P~~~~~ 151 (596)
T KOG4360|consen 72 EEKRRDLELAAKIGQSLLKANKALQEDNESLEEQVDAPWDRVVQLGHELSRKDELLRGYSAAIEESEAASVCSTPLVSNE 151 (596)
T ss_pred hcccchhHHHHHHHHHHHhhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhhhhheeeeccccccccccccCCCccCc
Confidence 3444566667776677777777777777766554421 111110 00 00000 00
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHhh-----------h----hHHHHHHhhHHHHHHHHHHHhHHhhHHHHHH
Q 002118 404 EYH----QRVATLERKVYALTKERDTLRREQNK-----------K----SDAAALLKEKDEIINQVMAEGEELSKKQAAQ 464 (964)
Q Consensus 404 Ey~----qRI~ALErKlQ~L~KErD~Lrke~ak-----------~----s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~ 464 (964)
+|. .-+.+|..||.-+.+|..+||.+... . ++.-+.|++=+.+|.-+.+|=+++++.--++
T Consensus 152 s~S~~~~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q 231 (596)
T KOG4360|consen 152 SRSAFQRELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQ 231 (596)
T ss_pred chhhHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 23678888888888888777765431 1 2334567777778888888878888777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002118 465 EAQIRKLRAQIRELEEEKKGLV 486 (964)
Q Consensus 465 sniIKKLRakikE~Eee~~~Lk 486 (964)
.--+-||=.+|.++.+.++.+.
T Consensus 232 ~Ee~skLlsql~d~qkk~k~~~ 253 (596)
T KOG4360|consen 232 QEENSKLLSQLVDLQKKIKYLR 253 (596)
T ss_pred HHHHHHHHHHHHhhHHHHHHHH
Confidence 6777777777777777666654
No 182
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=62.35 E-value=4.5e+02 Score=33.95 Aligned_cols=30 Identities=33% Similarity=0.203 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 568 LVQALEELRQTLSRTEQQAVFREDMLRRDI 597 (964)
Q Consensus 568 L~qqIedLRe~LeRaeq~a~~rEeeLR~Ei 597 (964)
..+.-.+.|..++-.++-++..|++.+...
T Consensus 972 ~~qee~e~~l~~e~q~qla~e~eee~k~q~ 1001 (1259)
T KOG0163|consen 972 KAQEEEERRLALELQEQLAKEAEEEAKRQN 1001 (1259)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555566666655555555666555444
No 183
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=61.96 E-value=1.2e+02 Score=33.12 Aligned_cols=90 Identities=22% Similarity=0.325 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---------HhccchhHHHH
Q 002118 864 GELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALE---------LMGERDEELEE 934 (964)
Q Consensus 864 GEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLE---------MlGEKsEeVEE 934 (964)
.++..+..++..|+...+.+...|..+..+.+.+......+...+.++.-+=.++-..|+ +.-|+.+.++.
T Consensus 56 ~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~ 135 (251)
T PF11932_consen 56 AEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERLAR 135 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444433333222222 34456777777
Q ss_pred HHHhHH----HHHHHHHHHHHHH
Q 002118 935 LRADIM----DLKEMYREQVNLL 953 (964)
Q Consensus 935 LraDL~----DVKeMYR~QID~L 953 (964)
|+.-+. .+-+-||..++-+
T Consensus 136 L~~~l~~~dv~~~ek~r~vlea~ 158 (251)
T PF11932_consen 136 LRAMLDDADVSLAEKFRRVLEAY 158 (251)
T ss_pred HHHhhhccCCCHHHHHHHHHHHH
Confidence 776663 2455577766655
No 184
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=61.64 E-value=3.9e+02 Score=32.95 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 625 LLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEER 667 (964)
Q Consensus 625 LLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eR 667 (964)
|==|+.+|-.-+.....-|.+.++....+|+..+.........
T Consensus 374 ld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~ 416 (531)
T PF15450_consen 374 LDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKE 416 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3347777777777778888888888888888877776655443
No 185
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=61.53 E-value=2e+02 Score=31.38 Aligned_cols=51 Identities=33% Similarity=0.472 Sum_probs=29.6
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhh------------hhHHHHHHhhHHHHHHHHHHHhHHhhHH
Q 002118 410 ATLERKV-YALTKERDTLRREQNK------------KSDAAALLKEKDEIINQVMAEGEELSKK 460 (964)
Q Consensus 410 ~ALErKl-Q~L~KErD~Lrke~ak------------~s~~~a~LkEKDEqIaqLmeEGEKLSKk 460 (964)
..+|+|| -.|-+|.+.||.+... ...+...|+||+++|=.|-.+=-|+=.+
T Consensus 23 E~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEqk 86 (205)
T PF12240_consen 23 EQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQK 86 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555 3455666666655431 1224457888888887776666555444
No 186
>PRK04863 mukB cell division protein MukB; Provisional
Probab=60.85 E-value=6.3e+02 Score=35.13 Aligned_cols=100 Identities=18% Similarity=0.198 Sum_probs=66.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hhhhhHHHH
Q 002118 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEA-----------------------AILPGIQAE 910 (964)
Q Consensus 854 ~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~-----------------------~~v~~Le~e 910 (964)
.+...|++.+.+...++.++...+.+...+...+..+...++.+.... .+-..|...
T Consensus 989 ~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~~ 1068 (1486)
T PRK04863 989 KLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHAR 1068 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHHHHH
Confidence 566666666666666666666666666666666555554444333222 112555666
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHH
Q 002118 911 LDALRRRHSAALELMGERDEELEELRADIMDLKEMYREQVNLL 953 (964)
Q Consensus 911 l~eLqqRY~TlLEMlGEKsEeVEELraDL~DVKeMYR~QID~L 953 (964)
|..-..|-+.+.-=+|=.-.+++.|..+|.+++.-|+.+-..+
T Consensus 1069 l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I 1111 (1486)
T PRK04863 1069 LSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQV 1111 (1486)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777888888889999999999999999999997665433
No 187
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=59.50 E-value=3.2e+02 Score=31.37 Aligned_cols=97 Identities=15% Similarity=0.238 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHH
Q 002118 644 AAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTK----SLEKERQRAAENRQEYLA 719 (964)
Q Consensus 644 e~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~----qLE~Er~r~~~~r~e~~a 719 (964)
+|+...|..-+..++.........+..+..=+-.+..+...|..++..+++-...+.. .|..-|.++.....++..
T Consensus 143 egLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~ 222 (312)
T smart00787 143 EGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMI 222 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777766666666666665566666666677666666554444321 333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002118 720 AKEEADTQEGRANQLEEEIKE 740 (964)
Q Consensus 720 akeE~~~le~r~~qLEeeL~e 740 (964)
.+..+..++.++..+...|+.
T Consensus 223 ~~~~l~e~~~~l~~l~~~I~~ 243 (312)
T smart00787 223 KVKKLEELEEELQELESKIED 243 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 188
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=59.23 E-value=1e+02 Score=29.41 Aligned_cols=50 Identities=22% Similarity=0.487 Sum_probs=38.7
Q ss_pred hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHH
Q 002118 395 DAELETLR----EEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQV 450 (964)
Q Consensus 395 ~~~~~~L~----eEy~qRI~ALErKlQ~L~KErD~Lrke~ak~s~~~a~LkEKDEqIaqL 450 (964)
+.-|..|+ .-|-.||+.|+..+..+.+|.+.|+++... ...||.+.|+.|
T Consensus 33 E~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~------e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 33 ETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDT------EREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhh
Confidence 45577788 667788999999999999999988887643 344788777654
No 189
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=59.04 E-value=3.3e+02 Score=31.33 Aligned_cols=98 Identities=21% Similarity=0.272 Sum_probs=77.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 002118 855 FESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEE 934 (964)
Q Consensus 855 LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEE 934 (964)
+...|...+.++...+.+|...+..=..+.+.|..|..+.+... .+...|+.++...+.|.+.+-.|++-=+.+..-
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~---~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~R 295 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQ---KEKQELEEEIEETERKLERAEKLISGLSGEKER 295 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhccHHHHHhhhcchhhh
Confidence 45667777788888888888888888888888888888777654 347788888899999999888888777777777
Q ss_pred HHHhHHHHHHHHHHHH-HHHHh
Q 002118 935 LRADIMDLKEMYREQV-NLLVN 955 (964)
Q Consensus 935 LraDL~DVKeMYR~QI-D~LLk 955 (964)
=...+.+++.-....+ |.||.
T Consensus 296 W~~~~~~l~~~~~~l~GD~lla 317 (344)
T PF12777_consen 296 WSEQIEELEEQLKNLVGDSLLA 317 (344)
T ss_dssp CHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHH
Confidence 7778888888777777 55543
No 190
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=58.73 E-value=3.5e+02 Score=31.56 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 002118 649 SLNLRLQEAEAKAAAS 664 (964)
Q Consensus 649 sL~~RLaeaE~~l~~A 664 (964)
.|..+|.+++.++...
T Consensus 258 ~l~~~l~~le~~l~~l 273 (444)
T TIGR03017 258 NLKTDIARAESKLAEL 273 (444)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555444
No 191
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=58.66 E-value=54 Score=37.01 Aligned_cols=90 Identities=26% Similarity=0.271 Sum_probs=59.1
Q ss_pred HHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHH
Q 002118 365 AQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKD 444 (964)
Q Consensus 365 ~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KErD~Lrke~ak~s~~~a~LkEKD 444 (964)
+.+...+|..++.+.+|+.-+|+-++-.-..+|+ -.++.|++|++.|..=. +.+.++|++|+
T Consensus 49 l~s~L~QIt~iQaeI~q~nlEielLkleKeTADl--------tH~~~L~~K~~~Lq~m~----------shLe~VLk~K~ 110 (277)
T PF15003_consen 49 LFSRLRQITNIQAEIDQLNLEIELLKLEKETADL--------THPDYLAEKCEALQSMN----------SHLEAVLKEKD 110 (277)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHhh--------hCHHHHHHHHHHHHHHH----------HHHHHHHHhHH
Confidence 3344556777777888888888877775545664 45777888888774322 36788999999
Q ss_pred HHHHHHHH--HhHHhhHHHHHHHHHHHHHH
Q 002118 445 EIINQVMA--EGEELSKKQAAQEAQIRKLR 472 (964)
Q Consensus 445 EqIaqLme--EGEKLSKkELq~sniIKKLR 472 (964)
.+|+-|+. =|+.|--.=--|+..+.=|+
T Consensus 111 ~Lr~RLqkP~~qe~LPVEA~yHr~vVeLL~ 140 (277)
T PF15003_consen 111 RLRQRLQKPYCQENLPVEAQYHRYVVELLE 140 (277)
T ss_pred HHHHHHHhhhhhcCccchhhhhHHHHHHHH
Confidence 99999885 24444443334444444343
No 192
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=58.06 E-value=74 Score=32.68 Aligned_cols=68 Identities=28% Similarity=0.375 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 340 SVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYAL 419 (964)
Q Consensus 340 ~~~e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L 419 (964)
+..|+..+..+|..|...+. .|...+..|..++..|...-...++...-..+.+.|..++.||..|
T Consensus 70 s~eel~~ld~ei~~L~~el~--------------~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELA--------------ELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred CchhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666555444 6777777788888887776656666666666666677777777655
Q ss_pred HH
Q 002118 420 TK 421 (964)
Q Consensus 420 ~K 421 (964)
..
T Consensus 136 ~~ 137 (169)
T PF07106_consen 136 RS 137 (169)
T ss_pred Hh
Confidence 43
No 193
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=57.81 E-value=3.7e+02 Score=31.54 Aligned_cols=78 Identities=14% Similarity=0.242 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 628 QIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEK 705 (964)
Q Consensus 628 QIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~ 705 (964)
-|+.++.....=...+...-..|..=-.++.+.++-...||.-+|.++..+....+.+-.+++.++.+..++...+..
T Consensus 221 hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~ 298 (359)
T PF10498_consen 221 HLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSE 298 (359)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 455565555555566666666666666667777777778888888877777666666666666666665555555543
No 194
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=57.73 E-value=96 Score=27.34 Aligned_cols=33 Identities=39% Similarity=0.479 Sum_probs=28.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 002118 902 AILPGIQAELDALRRRHSAALELMGERDEELEE 934 (964)
Q Consensus 902 ~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEE 934 (964)
...+.++..+..|+.||+.+..++.++-..++|
T Consensus 73 ~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 73 EDSDEIQEKLEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 346889999999999999999999988877765
No 195
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=57.69 E-value=3.5e+02 Score=31.14 Aligned_cols=49 Identities=27% Similarity=0.230 Sum_probs=35.1
Q ss_pred HHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 438 ALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLV 486 (964)
Q Consensus 438 a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~Lk 486 (964)
.+...=++.+..|..+-+.|.+..-....++-+||.+...+..++..|+
T Consensus 144 gLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~ 192 (312)
T smart00787 144 GLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLK 192 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556677777778888888777777777778877777766666654
No 196
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=57.21 E-value=2.9e+02 Score=30.07 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=16.5
Q ss_pred HHHhHHHHHHHHhHHHHHHHHHHHHhc
Q 002118 365 AQAKADEIAKMMNENEHLKAVIEDLKR 391 (964)
Q Consensus 365 ~~~k~~~~A~L~e~N~~L~~~~e~l~~ 391 (964)
+..+...++.+...++.|+..++.+-.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777777777777665433
No 197
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=56.66 E-value=4.6e+02 Score=32.30 Aligned_cols=84 Identities=20% Similarity=0.306 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 674 RLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQELQEAL 753 (964)
Q Consensus 674 kl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er~r~~~~r~e~~aakeE~~~le~r~~qLEeeL~elr~k~~~elqea~ 753 (964)
++.++..++...++..-....+...|...|...-. +......++....+++..|+++|...|.-|+.++.-..
T Consensus 421 RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~-------ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MS 493 (518)
T PF10212_consen 421 RIEELTSQLQHADSKAVHFYAECRALQKRLESAEK-------EKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMS 493 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44444444555555555555555666555543211 11222355666677888999999999999988888776
Q ss_pred HHHHHHHHHHH
Q 002118 754 MHRELLQQEIE 764 (964)
Q Consensus 754 ~~~e~lqq~lE 764 (964)
.+.-.+..+|.
T Consensus 494 EHLasmNeqL~ 504 (518)
T PF10212_consen 494 EHLASMNEQLA 504 (518)
T ss_pred HHHHHHHHHHH
Confidence 66555544443
No 198
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=56.62 E-value=2.2e+02 Score=28.61 Aligned_cols=51 Identities=24% Similarity=0.369 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 650 LNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLT 700 (964)
Q Consensus 650 L~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq 700 (964)
|..+++.++.++..+..+++.+..++..+...++...+++..++.-..+..
T Consensus 78 L~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~ 128 (151)
T PF11559_consen 78 LKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRK 128 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777776666655555555555554444333333
No 199
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=56.17 E-value=88 Score=30.83 Aligned_cols=59 Identities=22% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 002118 855 FESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRR 916 (964)
Q Consensus 855 LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqq 916 (964)
++..|.-+++++..++.-...|-++||.|+.=+-.|..+++..- +++.+|+..|.++..
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~---qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRN---QRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
No 200
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=55.54 E-value=1.6e+02 Score=26.93 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=36.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 002118 859 LRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALEL 924 (964)
Q Consensus 859 LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEM 924 (964)
+.++|.-+.++-+.|.-|+..-+.|.++-..|..+++.|+.+ ...|+.+....+.|-.++|.-
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~e---n~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEE---NEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555555555555555544 444556777777787777754
No 201
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=54.61 E-value=3.9e+02 Score=30.81 Aligned_cols=152 Identities=18% Similarity=0.331 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 568 LVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVE 647 (964)
Q Consensus 568 L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~iE 647 (964)
|..+-.-|..+|+...+. -++|-.||.-...||-+|-.-+++--.+- -.|.-+|-....-|-.+=
T Consensus 68 L~aENt~L~SkLe~EKq~----kerLEtEiES~rsRLaaAi~d~dqsq~sk-----------rdlelafqr~rdEw~~lq 132 (305)
T PF14915_consen 68 LKAENTMLNSKLEKEKQN----KERLETEIESYRSRLAAAIQDHDQSQTSK-----------RDLELAFQRARDEWVRLQ 132 (305)
T ss_pred HHHHHHHHhHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHhhH-----------HHHHHHHHHHhhHHHHHH
Confidence 333444455555444333 33455666777777776655555433321 235556666777787777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHH
Q 002118 648 RSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAE-------QTQLTKSLEKERQRAAENRQEYLAA 720 (964)
Q Consensus 648 ~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e-------~~~Lq~qLE~Er~r~~~~r~e~~aa 720 (964)
-.++.-+.++.-. --.+..+|..+.++++.|+.++...+-. +..++..|..-..+..+...-|...
T Consensus 133 dkmn~d~S~lkd~-------ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne 205 (305)
T PF14915_consen 133 DKMNSDVSNLKDN-------NEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNE 205 (305)
T ss_pred HHhcchHHhHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 7766666654432 2345566777777788888877665533 2233444443333344444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002118 721 KEEADTQEGRANQLEEEIKEL 741 (964)
Q Consensus 721 keE~~~le~r~~qLEeeL~el 741 (964)
.......-++-..+++.|.++
T Consensus 206 ~~kv~k~~~Kqes~eERL~Ql 226 (305)
T PF14915_consen 206 QDKVNKYIGKQESLEERLSQL 226 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 202
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=54.48 E-value=22 Score=34.76 Aligned_cols=59 Identities=19% Similarity=0.362 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHH
Q 002118 883 LAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDL 942 (964)
Q Consensus 883 L~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEELraDL~DV 942 (964)
+..++..|..++..++..++.++.++.++..++.+++.++..+.... ++..|=.+|.++
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~lP~~~-~~~~ll~~l~~~ 62 (144)
T PF04350_consen 4 LQAQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELLKKLPAEE-EIPSLLEDLNRL 62 (144)
T ss_dssp --------HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHHHCTTGGG-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHH
Confidence 45677778888888888899999999999999999999999999874 567776666655
No 203
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=53.74 E-value=4e+02 Score=30.65 Aligned_cols=114 Identities=19% Similarity=0.322 Sum_probs=60.5
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 618 VPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQT 697 (964)
Q Consensus 618 v~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~ 697 (964)
.|.--+.|+..|.-|...|..+.. +. ..+..+.++-++++.... ++++...++..|-.+.+....+..
T Consensus 129 ~~e~E~~lvq~I~~L~k~le~~~k----~~-e~~~~~~el~aei~~lk~-------~~~e~~eki~~la~eaqe~he~m~ 196 (294)
T COG1340 129 TPEEERELVQKIKELRKELEDAKK----AL-EENEKLKELKAEIDELKK-------KAREIHEKIQELANEAQEYHEEMI 196 (294)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888777765432 22 123445555555554333 344444445555555555555555
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 698 QLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRR 743 (964)
Q Consensus 698 ~Lq~qLE~Er~r~~~~r~e~~aakeE~~~le~r~~qLEeeL~elr~ 743 (964)
.+-...+..|.++-..+.++......++.+...+..+..+|.++..
T Consensus 197 k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 197 KLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5555556566555555555544444444444444444444444433
No 204
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=53.67 E-value=1.3e+02 Score=35.02 Aligned_cols=87 Identities=16% Similarity=0.215 Sum_probs=66.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----HHhccch
Q 002118 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAAL----ELMGERD 929 (964)
Q Consensus 854 ~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlL----EMlGEKs 929 (964)
+|...|++++-|.+.++-.|..+.++..+..+|-..|.+++.+..+- ...|..=|++++ .|+--+-
T Consensus 131 ~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~lay----------qq~L~~eyQatf~eq~~ml~kRQ 200 (401)
T PF06785_consen 131 HLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAY----------QQELNDEYQATFVEQHSMLDKRQ 200 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHH----------HHHHHHHhhcccccchhhhHHHH
Confidence 78999999999999999999999999999999999888876655432 234555566665 4777777
Q ss_pred hHHHHHHHhHHHHHHHHHHHH
Q 002118 930 EELEELRADIMDLKEMYREQV 950 (964)
Q Consensus 930 EeVEELraDL~DVKeMYR~QI 950 (964)
.-+-+|+..|+|+-.-.|.+.
T Consensus 201 ~yI~~LEsKVqDLm~EirnLL 221 (401)
T PF06785_consen 201 AYIGKLESKVQDLMYEIRNLL 221 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777778888888755555554
No 205
>PF14992 TMCO5: TMCO5 family
Probab=53.53 E-value=91 Score=35.35 Aligned_cols=40 Identities=23% Similarity=0.412 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002118 441 KEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEE 480 (964)
Q Consensus 441 kEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Ee 480 (964)
.....+|+-++..+.--.--.-.+-+-|+||+.+++-.|+
T Consensus 126 ~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ 165 (280)
T PF14992_consen 126 ASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEE 165 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444433344555666666665544333
No 206
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=53.24 E-value=1.1e+02 Score=27.77 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=31.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAE 900 (964)
Q Consensus 854 ~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~ 900 (964)
.|+..|.+....+...+..+..|...||.+..-|-....++.+|+.+
T Consensus 9 ~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E 55 (69)
T PF14197_consen 9 TLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEE 55 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666667777777777777777666666666666666654
No 207
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=53.13 E-value=49 Score=32.33 Aligned_cols=43 Identities=16% Similarity=0.320 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhc
Q 002118 349 REMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKR 391 (964)
Q Consensus 349 ~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~ 391 (964)
..|..|+..+..--.++..+.+++..|.++|..|+-++..|+.
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666655556666666666666666666666665554
No 208
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=52.87 E-value=3.6e+02 Score=29.85 Aligned_cols=18 Identities=17% Similarity=0.301 Sum_probs=10.1
Q ss_pred HHHHHHHhhhhHHHHHHH
Q 002118 854 AFESILRQKEGELASYMS 871 (964)
Q Consensus 854 ~LqA~LRqrEGEla~LQ~ 871 (964)
+|+-+|+-+-.||..+++
T Consensus 186 ~lq~QL~~L~~EL~~~kd 203 (246)
T PF00769_consen 186 RLQEQLKELKSELEQLKD 203 (246)
T ss_dssp HHHHHHHHHHHHHHTTB-
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 566666666666555554
No 209
>PRK10698 phage shock protein PspA; Provisional
Probab=52.79 E-value=3.4e+02 Score=29.57 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002118 638 RRAEAWAAVERSLNLRLQEAEA 659 (964)
Q Consensus 638 sqsenWe~iE~sL~~RLaeaE~ 659 (964)
.+...++.+|......-+.++.
T Consensus 163 ~a~~~f~rmE~ki~~~Ea~aea 184 (222)
T PRK10698 163 EAMARFESFERRIDQMEAEAES 184 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHHhH
Confidence 3344555555555555555443
No 210
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=51.83 E-value=3.6e+02 Score=29.53 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=39.0
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 852 PSAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEA 901 (964)
Q Consensus 852 pS~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~ 901 (964)
+..+....++.-.--+..|.++..+..++..|..++-.|..+.+.++...
T Consensus 23 ~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~ 72 (251)
T PF11932_consen 23 LDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYN 72 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666677888888888999999888888888888887653
No 211
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=51.62 E-value=1.9e+02 Score=35.72 Aligned_cols=86 Identities=12% Similarity=0.229 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 626 LRQIEAIQETTARRAEAWAAVERSL--NLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSL 703 (964)
Q Consensus 626 LRQIEtLQaQ~asqsenWe~iE~sL--~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qL 703 (964)
.+.++.++..|....+-|.+.-..| -..+.+++.+..+.....-.--..+..+...+..+-.++...+.....+..+|
T Consensus 163 ~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l 242 (555)
T TIGR03545 163 VETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDL 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999988888 77888888887777664100001223333444455555555555555555555
Q ss_pred HHHHHHHH
Q 002118 704 EKERQRAA 711 (964)
Q Consensus 704 E~Er~r~~ 711 (964)
+..+..+.
T Consensus 243 ~~~~~~~~ 250 (555)
T TIGR03545 243 QNDKKQLK 250 (555)
T ss_pred HHhHHHHH
Confidence 55444333
No 212
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=50.70 E-value=5.2e+02 Score=31.10 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHhhccC
Q 002118 910 ELDALRRRHSAALELMGERDEELEELRADIMDLKEMYREQVNLLVNKVIL 959 (964)
Q Consensus 910 el~eLqqRY~TlLEMlGEKsEeVEELraDL~DVKeMYR~QID~LLkQi~~ 959 (964)
-|.+|..|.+-+.-|.---.=-|--||.||.-|+-| |-.++++-+|+..
T Consensus 348 ~lqeLR~~~delct~versavs~asLrseLeglgpv-KPilEel~Rq~~~ 396 (558)
T PF15358_consen 348 GLQELRGRADELCTMVERSAVSVASLRSELEGLGPV-KPILEELGRQLQN 396 (558)
T ss_pred HHHHHHHhHHHHHHHHHHhHhHHHHHHHHhhcccCc-chHHHHHHHHHHh
Confidence 367777788777777777777788899999887765 4556677666643
No 213
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=50.08 E-value=2.2e+02 Score=28.92 Aligned_cols=72 Identities=14% Similarity=0.279 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHhccchhHHHHHHHhHHH
Q 002118 867 ASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAEL-DALRRRHSAALELMGERDEELEELRADIMD 941 (964)
Q Consensus 867 a~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el-~eLqqRY~TlLEMlGEKsEeVEELraDL~D 941 (964)
..++.++..|...+......+-.+......++.... .|..+. ..++.=++-+|.|||.=.+.+..+|.-|.+
T Consensus 37 ~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~---kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~ 109 (136)
T PF04871_consen 37 KRLEAEEKELKEAEQAAEAELEELASEVKELEAEKE---KLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKE 109 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333444444444444444444444433333332221 222222 456666677788888777777766665544
No 214
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=49.84 E-value=3.9e+02 Score=29.41 Aligned_cols=58 Identities=28% Similarity=0.416 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002118 560 EAGERETMLVQALEELRQTLSRTEQQAVF---REDMLRRDIEDLQRRYQASERRCEELVTQ 617 (964)
Q Consensus 560 EaeEre~~L~qqIedLRe~LeRaeq~a~~---rEeeLR~Eis~Le~RLEeaEsRaEELSss 617 (964)
..++-+..|.+-|.|.+..|..+.+..+. +.-.|..++..++.+.+..+.+++.+-+.
T Consensus 21 k~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~ 81 (225)
T COG1842 21 KAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQA 81 (225)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 33443446777777777777665554443 34445556666666666666666666554
No 215
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=49.67 E-value=3.5e+02 Score=28.79 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002118 590 EDMLRRDIEDLQRRYQASERRCEELVT 616 (964)
Q Consensus 590 EeeLR~Eis~Le~RLEeaEsRaEELSs 616 (964)
...|+..+..|+.|+..++.+.+.+..
T Consensus 114 ~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 114 VEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555444
No 216
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=48.17 E-value=3.8e+02 Score=28.84 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002118 593 LRRDIEDLQRRYQASERRCE 612 (964)
Q Consensus 593 LR~Eis~Le~RLEeaEsRaE 612 (964)
|+..+..|+.+++.++++-.
T Consensus 118 l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 118 LQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444443333
No 217
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=47.88 E-value=66 Score=30.45 Aligned_cols=66 Identities=24% Similarity=0.352 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 624 PLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQT 697 (964)
Q Consensus 624 PLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~ 697 (964)
++..||+.|...++.-...-+.+|+.|..+-=.-+.+. .+.+.+..+..++...|.+|..+|.++.
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~--------~lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARR--------SLEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHH--------HHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 45689999999999999999999998866543333322 2335556677778888888888776544
No 218
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=47.80 E-value=4.6e+02 Score=29.68 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 626 LRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEE 666 (964)
Q Consensus 626 LRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~e 666 (964)
+--...++..+..=++.-..||+.|-..|..++.+...+.-
T Consensus 26 kq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t 66 (333)
T KOG1853|consen 26 KQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLET 66 (333)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666666666666666665544443
No 219
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=47.65 E-value=57 Score=32.15 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhc
Q 002118 351 MKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKR 391 (964)
Q Consensus 351 ~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~ 391 (964)
|..|+..+..-..++..+..+++.|.++|..|+-++..|+.
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444445555555555555555555555444
No 220
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=47.58 E-value=6.1e+02 Score=31.02 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=24.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQ 893 (964)
Q Consensus 854 ~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e 893 (964)
|....|+ .|.+...=.+|..|...=..+..+-+.-.+.
T Consensus 529 rae~~l~--~gdL~~A~~~~~~L~g~~~~~a~dW~~~ar~ 566 (582)
T PF09731_consen 529 RAEYYLE--RGDLDKAARELNQLKGWARKLAADWLKEARR 566 (582)
T ss_pred HHHHHHH--CCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 4555554 5777777778887877766666666555543
No 221
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=46.97 E-value=2.2e+02 Score=31.25 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=6.0
Q ss_pred HHHHHHhHHhhHHH
Q 002118 448 NQVMAEGEELSKKQ 461 (964)
Q Consensus 448 aqLmeEGEKLSKkE 461 (964)
...|++++.|.++.
T Consensus 130 ~~~~~~~~~lk~~~ 143 (216)
T KOG1962|consen 130 EKAMKENEALKKQL 143 (216)
T ss_pred HHHHHHHHHHHHhh
Confidence 33444444444433
No 222
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=46.62 E-value=4.4e+02 Score=29.11 Aligned_cols=93 Identities=19% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 626 LRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEK 705 (964)
Q Consensus 626 LRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~ 705 (964)
..+++-+-..+....++|+..+.-| .++.+..+....--..-.+.|+.+..-++.||.-+..++.+..+.......
T Consensus 10 ~~~lek~k~~i~~e~~~~e~ee~~L----~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r 85 (230)
T PF10146_consen 10 TLELEKLKNEILQEVESLENEEKCL----EEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQR 85 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 002118 706 ERQRAAENRQEYLAAKEEADTQEG 729 (964)
Q Consensus 706 Er~r~~~~r~e~~aakeE~~~le~ 729 (964)
.. .+|...+.+++.+..
T Consensus 86 ~~-------eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 86 LY-------EEYKPLKDEINELRK 102 (230)
T ss_pred HH-------HHHHHHHHHHHHHHH
No 223
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=46.47 E-value=42 Score=29.55 Aligned_cols=28 Identities=39% Similarity=0.494 Sum_probs=19.3
Q ss_pred HHHHhHHHHHHHHhHHHHHHHHHHHHhc
Q 002118 364 QAQAKADEIAKMMNENEHLKAVIEDLKR 391 (964)
Q Consensus 364 ~~~~k~~~~A~L~e~N~~L~~~~e~l~~ 391 (964)
++..+..+++.|..+|+.|+.++..|+.
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445556677788888888888877743
No 224
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=46.36 E-value=2.5e+02 Score=30.93 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002118 685 LEAQISCLRAEQTQLTKSLEK 705 (964)
Q Consensus 685 LE~els~lR~e~~~Lq~qLE~ 705 (964)
+++++.+...+...|..+|+.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~ 169 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEK 169 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHH
Confidence 555555555555555554443
No 225
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=46.16 E-value=58 Score=36.34 Aligned_cols=54 Identities=24% Similarity=0.315 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 652 LRLQEAEAKAAASEERE---RSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEK 705 (964)
Q Consensus 652 ~RLaeaE~~l~~A~eRE---r~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~ 705 (964)
.+|.+++.++.+..+.| ..+..++..+..|++.+|.++..|-....+|.+.|+.
T Consensus 186 ~~l~dkekEl~sfK~sEeeNar~V~kAnsVldRmk~aEaqvneLEvsN~DLsaKLe~ 242 (311)
T PF04642_consen 186 DQLSDKEKELESFKRSEEENARAVEKANSVLDRMKEAEAQVNELEVSNIDLSAKLEP 242 (311)
T ss_pred cccccHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhheecccHHHHHhhcC
Confidence 46888888888877654 3566788888999999999999998888888888875
No 226
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=45.95 E-value=5.5e+02 Score=30.02 Aligned_cols=132 Identities=14% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHh
Q 002118 375 MMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEG 454 (964)
Q Consensus 375 L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KErD~Lrke~ak~s~~~a~LkEKDEqIaqLmeEG 454 (964)
|....+.|..++.-|.. ..|+.++++++.|..+.+ .++..........+.+.+|..|.+==
T Consensus 244 l~~~l~~L~~~lslL~~---------------~~Ld~i~~rl~~L~~~~~----~l~~~~~~~~~~~~~e~KI~eLy~~l 304 (388)
T PF04912_consen 244 LLPALNELERQLSLLDP---------------AKLDSIERRLKSLLSELE----ELAEKRKEAKEDAEQESKIDELYEIL 304 (388)
T ss_pred HHHHHHHHHHHHHhcCH---------------HHHHHHHHHHHHHHHHHH----HHHhccccccccccchhHHHHHHHHH
Q ss_pred HHhhHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002118 455 EELSKKQAAQEAQIRKLRA-------------QIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQETIEKHQVEL 521 (964)
Q Consensus 455 EKLSKkELq~sniIKKLRa-------------kikE~Eee~~~Lk~Kle~e~~k~es~kr~~~a~EK~lqe~iek~q~eL 521 (964)
.+|..---..=.+|..||. -+..++..+..+..-+..-..-+..+......-.+..+..+..+...+
T Consensus 305 ~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri 384 (388)
T PF04912_consen 305 PRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERI 384 (388)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhH
Q 002118 522 GEQK 525 (964)
Q Consensus 522 ~aqk 525 (964)
+.++
T Consensus 385 ~~L~ 388 (388)
T PF04912_consen 385 AKLQ 388 (388)
T ss_pred hccC
No 227
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=45.85 E-value=2.5e+02 Score=32.07 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHH
Q 002118 868 SYMSRLASMESIRDSLAEELVKMTAQC------EKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMD 941 (964)
Q Consensus 868 ~LQ~ELarLe~qRdeL~eELV~Lt~e~------Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEELraDL~D 941 (964)
-++.++..+...=..+...|....+++ .........+..|+.++.+++.+|..+..-||+..=.|-.|+..+..
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~ 253 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKS 253 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Confidence 344444444444444444444444433 12333445688889999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHH
Q 002118 942 LKEMYREQVNLL 953 (964)
Q Consensus 942 VKeMYR~QID~L 953 (964)
++......+..+
T Consensus 254 l~~~i~~e~~~i 265 (362)
T TIGR01010 254 LRKQIDEQRNQL 265 (362)
T ss_pred HHHHHHHHHHHh
Confidence 866655554444
No 228
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.62 E-value=8.2e+02 Score=31.95 Aligned_cols=52 Identities=21% Similarity=0.290 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 683 NVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKEL 741 (964)
Q Consensus 683 ~~LE~els~lR~e~~~Lq~qLE~Er~r~~~~r~e~~aakeE~~~le~r~~qLEeeL~el 741 (964)
..++-++.+.++++..+.--+.+..++. .+.+..+..+......-+.+...-
T Consensus 900 ~nl~lki~s~kqeqee~~v~~~~~~~~i-------~alk~~l~dL~q~~eeie~e~~s~ 951 (970)
T KOG0946|consen 900 ENLSLKIVSNKQEQEELLVLLADQKEKI-------QALKEALEDLNQPVEEIEDEKVSI 951 (970)
T ss_pred ccchhcccchhhhHHHHHHHHhhHHHHH-------HHHHHHHHHhCCChhhHHhhhhcc
Confidence 4555566677777777776666554332 344556666666665555555443
No 229
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=45.53 E-value=91 Score=29.62 Aligned_cols=80 Identities=23% Similarity=0.331 Sum_probs=49.9
Q ss_pred ccccccccccccCCcccHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHH
Q 002118 324 EEQRLSSEANVSVSADSVC--ELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETL 401 (964)
Q Consensus 324 ~~~~~~~~~~~~~s~~~~~--e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L 401 (964)
|...|-....++.+.++-. +..-|+.||+-|...++. --++++-..+|-.|+.++-.|+.-....+
T Consensus 4 kI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~--------nPevtr~A~EN~rL~ee~rrl~~f~~~ge---- 71 (86)
T PF12711_consen 4 KIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEH--------NPEVTRFAMENIRLREELRRLQSFYVEGE---- 71 (86)
T ss_pred HHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHh--------CHHHHHHHHHHHHHHHHHHHHHHHHHhhH----
Confidence 3444444444555555543 446788888888877774 45777888888888888888777443333
Q ss_pred HHHHHHHHHHHHHH
Q 002118 402 REEYHQRVATLERK 415 (964)
Q Consensus 402 ~eEy~qRI~ALErK 415 (964)
++--.+-|+.|+..
T Consensus 72 rE~l~~eis~L~~~ 85 (86)
T PF12711_consen 72 REMLLQEISELRDQ 85 (86)
T ss_pred HHHHHHHHHHHHhh
Confidence 33334556665543
No 230
>PRK12704 phosphodiesterase; Provisional
Probab=45.32 E-value=6.7e+02 Score=30.84 Aligned_cols=152 Identities=20% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 525 KDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRY 604 (964)
Q Consensus 525 k~~~~~~L~aAke~e~lAE~ra~~Ea~~~Le~~lkEaeEre~~L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RL 604 (964)
+..+..+-..|+....-|...++............++..+...+...+.+.+..|.+.+.+...|++.|......|..+-
T Consensus 30 ~~~l~~Ae~eAe~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke 109 (520)
T PRK12704 30 EAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKRE 109 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HHHHHH
Q 002118 605 QASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERE--RSVNERL-SQTLSR 681 (964)
Q Consensus 605 EeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eRE--r~~~ekl-~e~~~r 681 (964)
+.+..+.+++.. ++..+.......+.+......+|...-.--.+.++.. ..+.+++ .++...
T Consensus 110 ~eL~~re~~Le~---------------re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~~~~~~~~ 174 (520)
T PRK12704 110 EELEKKEKELEQ---------------KQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVL 174 (520)
T ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 002118 682 INVLEAQISC 691 (964)
Q Consensus 682 i~~LE~els~ 691 (964)
++..+.+...
T Consensus 175 ~~~~~~~~~~ 184 (520)
T PRK12704 175 IKEIEEEAKE 184 (520)
T ss_pred HHHHHHHHHH
No 231
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=45.22 E-value=4.5e+02 Score=28.74 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 675 LSQTLSRINVLEAQISCLRAEQTQLTKSLE 704 (964)
Q Consensus 675 l~e~~~ri~~LE~els~lR~e~~~Lq~qLE 704 (964)
+....++|..|+.++..+...+..|...-+
T Consensus 104 aE~~Es~~~eLeEe~~~~~~nlk~l~~~ee 133 (205)
T KOG1003|consen 104 AEAAESQSEELEEDLRILDSNLKSLSAKEE 133 (205)
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 444455666666666665555555544433
No 232
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=44.50 E-value=9.2e+02 Score=32.20 Aligned_cols=93 Identities=18% Similarity=0.261 Sum_probs=51.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHHHHH------
Q 002118 859 LRQKEGELASYMSRLASMESIRD-------SLAEELVKMTAQCEKLRA----EAAILPGIQAELDALRRRHSAA------ 921 (964)
Q Consensus 859 LRqrEGEla~LQ~ELarLe~qRd-------eL~eELV~Lt~e~Eelr~----~~~~v~~Le~el~eLqqRY~Tl------ 921 (964)
|+..+.++.++..++.+++..|. .+..|+..+..+--.+.. +...+..++..+..+..--++.
T Consensus 694 i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~s 773 (1200)
T KOG0964|consen 694 IEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGS 773 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhH
Confidence 44555667777666666666554 455555555443322222 2233444444444444433332
Q ss_pred ---HHHhccchhHHHHHHHhHHHHHHHHHHHHH
Q 002118 922 ---LELMGERDEELEELRADIMDLKEMYREQVN 951 (964)
Q Consensus 922 ---LEMlGEKsEeVEELraDL~DVKeMYR~QID 951 (964)
.||--|-.|.+.-|..+|.+++.-++..+.
T Consensus 774 el~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~ 806 (1200)
T KOG0964|consen 774 ELFSQLTPEELERLSKLNKEINKLSVKLRALRE 806 (1200)
T ss_pred HHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344455667777888888888887776653
No 233
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=44.30 E-value=3.4e+02 Score=27.06 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 002118 646 VERSLNLRLQEAEAKA 661 (964)
Q Consensus 646 iE~sL~~RLaeaE~~l 661 (964)
+...|..++.++...+
T Consensus 149 ~~~~i~~~~~~l~~~l 164 (202)
T PF01442_consen 149 LEAKISERLEELRESL 164 (202)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 234
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=43.90 E-value=7.9e+02 Score=31.24 Aligned_cols=55 Identities=7% Similarity=0.194 Sum_probs=28.4
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 367 AKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTK 421 (964)
Q Consensus 367 ~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~K 421 (964)
=+..++..+..+.++....++.++.+.+--++..-...+.+++..++.++..+..
T Consensus 271 fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~ 325 (726)
T PRK09841 271 FLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTF 325 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555566665543333333334455666666666655443
No 235
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=43.74 E-value=2.8e+02 Score=31.04 Aligned_cols=82 Identities=29% Similarity=0.438 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHH
Q 002118 645 AVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLT--KSLEKERQRAAENRQEYLAAKE 722 (964)
Q Consensus 645 ~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq--~qLE~Er~r~~~~r~e~~aake 722 (964)
.+++-|..||-.++.-++.+-.- ...++..+..+++.+|-+..+|+ -+|.++- .+.|. .
T Consensus 161 ~l~~eLqkr~~~v~~l~~q~~k~----------~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~------q~~~~---a 221 (289)
T COG4985 161 PLERELQKRLLEVETLRDQVDKM----------VEQQVRVINSQLERLRLEKRRLQLNGQLDDEF------QQHYV---A 221 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhcccccHHH------HHHHH---H
Confidence 35666777777666554432221 12356777888888875555544 3344322 23333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002118 723 EADTQEGRANQLEEEIKELRRKH 745 (964)
Q Consensus 723 E~~~le~r~~qLEeeL~elr~k~ 745 (964)
+...++.|..+++++|+.|+.++
T Consensus 222 e~seLq~r~~~l~~~L~~L~~e~ 244 (289)
T COG4985 222 EKSELQKRLAQLQTELDALRAEL 244 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 44456777778888877665544
No 236
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=43.14 E-value=8.7e+02 Score=31.52 Aligned_cols=130 Identities=28% Similarity=0.359 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 343 ELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKE 422 (964)
Q Consensus 343 e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KE 422 (964)
=-||...++-.|-..|+.+..+--...+.++.|-. .|+.=+. .+...++|--|||-.+=.| -++|
T Consensus 18 gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~---aLkec~~---------qlr~~ree~eq~i~~~~~~---~s~e 82 (769)
T PF05911_consen 18 GWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDG---ALKECMR---------QLRQVREEQEQKIHEAVAK---KSKE 82 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhH---HHHHHHH---------HHHHhhHHHHHHHHHHHHH---HhHH
Confidence 35677777777777777763332233333333321 1222121 1233455555555433221 1233
Q ss_pred HHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002118 423 RDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEE 493 (964)
Q Consensus 423 rD~Lrke~ak~s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~Lk~Kle~e~ 493 (964)
.+.+ ...+...|.|-..++..+-.|--.|++.-+..++.|-.|+......+.++..|..+++..+
T Consensus 83 ~e~~------~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~e 147 (769)
T PF05911_consen 83 WEKI------KSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTE 147 (769)
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3322 2345667777777888888888888888888888888888777777777777776666433
No 237
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=43.02 E-value=1.6e+02 Score=27.95 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002118 407 QRVATLERKVYALTKERDTLRREQNK 432 (964)
Q Consensus 407 qRI~ALErKlQ~L~KErD~Lrke~ak 432 (964)
.+|-.+..+...+..+.+.|+.+.+.
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~ 54 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNE 54 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444444445555555655555443
No 238
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=42.56 E-value=5.5e+02 Score=31.69 Aligned_cols=102 Identities=15% Similarity=0.258 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 002118 399 ETLREEYHQRVATLERKVYALTKERDTLRREQNK-KSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRE 477 (964)
Q Consensus 399 ~~L~eEy~qRI~ALErKlQ~L~KErD~Lrke~ak-~s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE 477 (964)
.-|+.-|..||+.|=.++|.+--....+..+-.. ..-+...-++|+-....|.+-+++++.-|=...++.+---.||.-
T Consensus 412 ~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~ 491 (518)
T PF10212_consen 412 QLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSM 491 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3468889999999877776542222212111110 001122234666666777777777777777777777777777777
Q ss_pred HHHHHHHHHhHHHHHHHhHHHHH
Q 002118 478 LEEEKKGLVTKLQVEENKVESIK 500 (964)
Q Consensus 478 ~Eee~~~Lk~Kle~e~~k~es~k 500 (964)
+-+-+-.|++++......++.+|
T Consensus 492 MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 492 MSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777776665565555
No 239
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=42.46 E-value=6.4e+02 Score=29.77 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------h----cCCCccchHH
Q 002118 567 MLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELV------T----QVPESTRPLL 626 (964)
Q Consensus 567 ~L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELS------s----sv~eATrPLL 626 (964)
.+..+.+.||.+++|.+-+. ..|+.|..-|..-..++|+-++-++ - +-+.+|-|||
T Consensus 249 EfdiEre~LRAel~ree~r~----K~lKeEmeSLkeiVkdlEA~hQh~~pNeqLk~pvtvskgtateplm 314 (561)
T KOG1103|consen 249 EFDIEREFLRAELEREEKRQ----KMLKEEMESLKEIVKDLEADHQHLRPNEQLKGPVTVSKGTATEPLM 314 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhhhcCccccccCceeeccccccchhH
Confidence 35556777888887775444 3456666666666666665554444 3 2357899997
No 240
>PRK11519 tyrosine kinase; Provisional
Probab=42.30 E-value=8.3e+02 Score=31.02 Aligned_cols=52 Identities=8% Similarity=0.227 Sum_probs=24.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 369 ADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALT 420 (964)
Q Consensus 369 ~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~ 420 (964)
..++..+....+.....+..++.+..--++..-...+.+.+..++.++..+.
T Consensus 273 ~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~ 324 (719)
T PRK11519 273 AQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELT 324 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455555544333333333444555555555555443
No 241
>PRK00106 hypothetical protein; Provisional
Probab=42.26 E-value=7.7e+02 Score=30.63 Aligned_cols=168 Identities=15% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHH
Q 002118 516 KHQVELGEQKDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQALEELRQTLSRT---EQ-QAVFRED 591 (964)
Q Consensus 516 k~q~eL~aqk~~~~~~L~aAke~e~lAE~ra~~Ea~~~Le~~lkEaeEre~~L~qqIedLRe~LeRa---eq-~a~~rEe 591 (964)
++.+--.+-.-++-.+...|+..-.-|+.+|+.-...+.........+....+..++...|..+++. +. +...+|.
T Consensus 25 ~~~~~~~~~~~~~~~A~~~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~eEr~rL~qrE~ 104 (535)
T PRK00106 25 KMKSAKEAAELTLLNAEQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIES 104 (535)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 002118 592 MLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERE--R 669 (964)
Q Consensus 592 eLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eRE--r 669 (964)
.|...-..|.+|.+.++.+-.+|.. ..+.|+..+..+.......+.+......+|...-.--.+.++.. .
T Consensus 105 rL~qREE~LekRee~LekrE~eLe~--------kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~l~~ 176 (535)
T PRK00106 105 RLTERATSLDRKDENLSSKEKTLES--------KEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILA 176 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHH
Q 002118 670 SVNERL-SQTLSRINVLEAQISC 691 (964)
Q Consensus 670 ~~~ekl-~e~~~ri~~LE~els~ 691 (964)
.+.+++ .++...++..+.+...
T Consensus 177 ~~~~~~~~~~~~~i~~~e~~a~~ 199 (535)
T PRK00106 177 ETENKLTHEIATRIREAEREVKD 199 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 242
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=42.00 E-value=2.2e+02 Score=36.07 Aligned_cols=73 Identities=19% Similarity=0.382 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHH
Q 002118 868 SYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLK 943 (964)
Q Consensus 868 ~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEELraDL~DVK 943 (964)
.++..+..+...++....+|-.|..++..++.. ...++.++..+...|+-.|..+|.....++++...+.+.+
T Consensus 224 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~ 296 (670)
T KOG0239|consen 224 DLRRNIKPLEGLESTIKKKIQALQQELEELKAE---LKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK 296 (670)
T ss_pred hHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555555555554433 4445555555666666666666665555555555555444
No 243
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=41.90 E-value=2.2e+02 Score=25.82 Aligned_cols=45 Identities=13% Similarity=0.261 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 002118 575 LRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVP 619 (964)
Q Consensus 575 LRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~ 619 (964)
+-..|.+.+...+.....+..|-..|..|.+.|++|.|-+-+..+
T Consensus 15 ~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 15 YLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455555666666778889999999999999999998877644
No 244
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=41.73 E-value=4.9e+02 Score=28.27 Aligned_cols=19 Identities=16% Similarity=0.086 Sum_probs=10.1
Q ss_pred hHHHHHHHhhhhHHHHHHH
Q 002118 853 SAFESILRQKEGELASYMS 871 (964)
Q Consensus 853 S~LqA~LRqrEGEla~LQ~ 871 (964)
.+|.-.|-.+--=|++|.+
T Consensus 255 ~~f~~~v~lLn~nI~~L~~ 273 (302)
T PF10186_consen 255 QRFEYAVFLLNKNIAQLCF 273 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555544
No 245
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=41.66 E-value=1.4e+02 Score=27.17 Aligned_cols=38 Identities=32% Similarity=0.347 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH
Q 002118 350 EMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIE 387 (964)
Q Consensus 350 ~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e 387 (964)
.++.|.....++.++|..+-.++.+|..+|+-|+.+++
T Consensus 27 ~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 27 ENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433
No 246
>PLN02678 seryl-tRNA synthetase
Probab=41.14 E-value=1.3e+02 Score=36.27 Aligned_cols=53 Identities=32% Similarity=0.339 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHhHHhh
Q 002118 406 HQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELS 458 (964)
Q Consensus 406 ~qRI~ALErKlQ~L~KErD~Lrke~ak~s~~~a~LkEKDEqIaqLmeEGEKLS 458 (964)
+.+|-++..+...+..+.+.||.+.+..+..-..++-..+.+..|++++..|.
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk 84 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELK 84 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 45666666666666777777766655443322222222233444555444443
No 247
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=40.94 E-value=6.9e+02 Score=29.72 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 002118 628 QIEAIQETTAR 638 (964)
Q Consensus 628 QIEtLQaQ~as 638 (964)
||..++.++..
T Consensus 180 ~i~~~~~~~~~ 190 (457)
T TIGR01000 180 QISKTDQKLQD 190 (457)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 248
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=40.83 E-value=6.9e+02 Score=29.70 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 721 KEEADTQEGRANQLEEEIKELRRKHK 746 (964)
Q Consensus 721 keE~~~le~r~~qLEeeL~elr~k~~ 746 (964)
..++...+.++..++..+..++..+.
T Consensus 290 ~~~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 290 KQEITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555556666677777776666553
No 249
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=40.48 E-value=7.1e+02 Score=29.76 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=36.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 002118 859 LRQKEGELASYMSRLASMESIRDSLAEELV-KMTAQCEKLRAEAAILPGIQAELDALRRRHSA 920 (964)
Q Consensus 859 LRqrEGEla~LQ~ELarLe~qRdeL~eELV-~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~T 920 (964)
+...-.|+..++....+|+..=+.|...+- .+.--++.|.++--++..|+.++.|+-+.|+.
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~ 276 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQN 276 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333334445555555555544444444322 22334556777777888899999988888876
No 250
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=40.40 E-value=7.6e+02 Score=30.08 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-Cc-cchHHHHHHHHHHHHHHHHHHHH
Q 002118 568 LVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQ-VP-ES-TRPLLRQIEAIQETTARRAEAWA 644 (964)
Q Consensus 568 L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSss-v~-eA-TrPLLRQIEtLQaQ~asqsenWe 644 (964)
..++..++...++.........+.+|..=-.-...-|+.-+.+.+.|..+ +. .. ..+.-=-++.|+.......+-++
T Consensus 212 ~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~ 291 (511)
T PF09787_consen 212 YLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQ 291 (511)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHH
Confidence 33455555555554444443333333322222334566677778888773 22 11 11110124456666666667777
Q ss_pred HHHHHH
Q 002118 645 AVERSL 650 (964)
Q Consensus 645 ~iE~sL 650 (964)
.++..+
T Consensus 292 ~l~~Qi 297 (511)
T PF09787_consen 292 LLERQI 297 (511)
T ss_pred HHHHHH
Confidence 777776
No 251
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=40.06 E-value=7.9e+02 Score=30.18 Aligned_cols=154 Identities=25% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 525 KDYYTNALAAAKEAEELAEARANNEARAELESRLREAGERETMLVQALEEL----RQTLSRTEQQAVFREDMLRRDIEDL 600 (964)
Q Consensus 525 k~~~~~~L~aAke~e~lAE~ra~~Ea~~~Le~~lkEaeEre~~L~qqIedL----Re~LeRaeq~a~~rEeeLR~Eis~L 600 (964)
+......+..|+..+......+..++.........++++.....+.+++.. +..|.+.+++...|++.|......|
T Consensus 20 k~~a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~L 99 (514)
T TIGR03319 20 KRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESL 99 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 601 QRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTAR-RAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTL 679 (964)
Q Consensus 601 e~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~as-qsenWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~ 679 (964)
..|-+.++.+-+++.. ..+.++.+...+.. ..+.|..+|+--.-=..++...+-...+.+. -.++.
T Consensus 100 ekre~~Le~ke~~L~~--------re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~l~~~~~~~~-----~~~~~ 166 (514)
T TIGR03319 100 DKKEENLEKKEKELSN--------KEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEA-----RHEAA 166 (514)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-----HHHHH
Q ss_pred HHHHHHHHHHHH
Q 002118 680 SRINVLEAQISC 691 (964)
Q Consensus 680 ~ri~~LE~els~ 691 (964)
..++..+.+...
T Consensus 167 ~~~~~~~~~~~~ 178 (514)
T TIGR03319 167 KLIKEIEEEAKE 178 (514)
T ss_pred HHHHHHHHHHHH
No 252
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=39.79 E-value=3.3e+02 Score=34.32 Aligned_cols=57 Identities=11% Similarity=0.265 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 594 RRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTA---RRAEAWAAVERSLNLRLQEAEAKA 661 (964)
Q Consensus 594 R~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~a---sqsenWe~iE~sL~~RLaeaE~~l 661 (964)
..-+..+..|+..+|.+..++.. |+..||..|. ..+..|--.|.-..-|++.-+..+
T Consensus 377 ~~~~~~~~~~l~~le~~l~~~~~-----------~~~~L~~~~~~l~~~r~dW~laEae~Ll~lA~q~L~l 436 (656)
T PRK06975 377 QASVHQLDSQFAQLDGKLADAQS-----------AQQALEQQYQDLSRNRDDWMIAEVEQMLSSASQQLQL 436 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777555 6777777764 345889888888877777654443
No 253
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=39.77 E-value=1.5e+02 Score=31.20 Aligned_cols=49 Identities=14% Similarity=0.322 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhc
Q 002118 875 SMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMG 926 (964)
Q Consensus 875 rLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlG 926 (964)
.+......|..|+-.|..+++.|+.+ +..|..++..++.-|.+++..|-
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e---~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKE---LEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666777777777655 66777778888888888887763
No 254
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=39.62 E-value=1.4e+02 Score=35.51 Aligned_cols=71 Identities=27% Similarity=0.380 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 406 HQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGL 485 (964)
Q Consensus 406 ~qRI~ALErKlQ~L~KErD~Lrke~ak~s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~L 485 (964)
+.+|-+|..+...+..+.+.||++.+..+..-+.++-+.+....|+++ +|+|+.+++++++++..+
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~--------------~~~l~~~~~~~~~~~~~~ 92 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAE--------------VKELKEEIKALEAELDEL 92 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 456666666666677777777776654433221111111112223333 455666666666666665
Q ss_pred HhHHH
Q 002118 486 VTKLQ 490 (964)
Q Consensus 486 k~Kle 490 (964)
..++.
T Consensus 93 ~~~~~ 97 (425)
T PRK05431 93 EAELE 97 (425)
T ss_pred HHHHH
Confidence 55444
No 255
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=39.33 E-value=4.5e+02 Score=30.52 Aligned_cols=49 Identities=24% Similarity=0.385 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHhHHHHHHHHhHHHHHHHHHHHHhcc
Q 002118 341 VCELEKLKREMKMMETALQGA------ARQAQAKADEIAKMMNENEHLKAVIEDLKRK 392 (964)
Q Consensus 341 ~~e~ekl~~~~~~~~~~l~~~------~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~ 392 (964)
.+|+|||-..|.+|+.++.+- .|-.|+ ++.+|.++--.|-.++.+.+--
T Consensus 34 V~EVEKLsqTi~ELEEaiLagGaaaNavrdYqr---q~~elneEkrtLeRELARaKV~ 88 (351)
T PF07058_consen 34 VLEVEKLSQTIRELEEAILAGGAAANAVRDYQR---QVQELNEEKRTLERELARAKVS 88 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhh
Confidence 579999999999999888742 255454 7788888888888888776653
No 256
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=39.27 E-value=6.8e+02 Score=29.15 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 671 VNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAA 711 (964)
Q Consensus 671 ~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er~r~~ 711 (964)
+-..+..+..++..|+..+.++.-+...+...-..++.+..
T Consensus 131 lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~ 171 (319)
T PF09789_consen 131 LVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAH 171 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666667777776666666655555555554443
No 257
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=38.88 E-value=3e+02 Score=30.63 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 671 VNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEK 705 (964)
Q Consensus 671 ~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~ 705 (964)
+++...+.+.++..+-.+...++.++..|+..++.
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee 167 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEE 167 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555555555544443
No 258
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=38.64 E-value=9.9e+02 Score=30.89 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=17.4
Q ss_pred cccccCCCCCchhhhhhhhHH
Q 002118 5 SGKVSLGNFPDLAGAVNKFSE 25 (964)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~ 25 (964)
.|...||+|||+...+.+++.
T Consensus 60 ~~~~~l~~~~Di~~~l~r~~~ 80 (782)
T PRK00409 60 KGLPPFEGVKDIDDALKRAEK 80 (782)
T ss_pred cCCCCCCCCccHHHHHHHHhC
Confidence 466789999999999888863
No 259
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.98 E-value=2.6e+02 Score=26.38 Aligned_cols=44 Identities=32% Similarity=0.454 Sum_probs=22.9
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 002118 367 AKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVY 417 (964)
Q Consensus 367 ~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ 417 (964)
....+++.|...|+.|...+-.+.. .+++.|. ..-|..||..|.
T Consensus 16 ~~~~e~~~L~~~~~~L~~~~R~~~G----edL~~Ls---~~eL~~LE~~Le 59 (100)
T PF01486_consen 16 ELQQEIAKLRKENESLQKELRHLMG----EDLESLS---LKELQQLEQQLE 59 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc----ccccccc---hHHHHHHHHhhh
Confidence 3344556666666666654444333 3343333 355666666664
No 260
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=37.80 E-value=5.3e+02 Score=27.45 Aligned_cols=83 Identities=18% Similarity=0.306 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHH
Q 002118 562 GERETMLVQALEELRQTLSRTEQQAV---FREDMLRRDIEDLQRRYQASERRCEELVTQVP-ESTRPLLRQIEAIQETTA 637 (964)
Q Consensus 562 eEre~~L~qqIedLRe~LeRaeq~a~---~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~-eATrPLLRQIEtLQaQ~a 637 (964)
++-+..|.+.|.++...|..+....+ .....|..++..+...+...+.+++.+-...- +.-+..|..+..++.+..
T Consensus 22 EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~ 101 (221)
T PF04012_consen 22 EDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAE 101 (221)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 33334667777777777776554443 35667778888888888888888888766543 333444554444444444
Q ss_pred HHHHHHH
Q 002118 638 RRAEAWA 644 (964)
Q Consensus 638 sqsenWe 644 (964)
.-...|.
T Consensus 102 ~l~~~~~ 108 (221)
T PF04012_consen 102 RLEQQLD 108 (221)
T ss_pred HHHHHHH
Confidence 4333333
No 261
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=37.10 E-value=4.5e+02 Score=26.49 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 624 PLLRQIEAIQETTARRAEAWAAVERSLN 651 (964)
Q Consensus 624 PLLRQIEtLQaQ~asqsenWe~iE~sL~ 651 (964)
-++.|+..||.++..-.-.-+.+|..|.
T Consensus 10 ~~l~q~QqLq~ql~~~~~qk~~le~qL~ 37 (119)
T COG1382 10 AQLAQLQQLQQQLQKVILQKQQLEAQLK 37 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888777777777776664
No 262
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=37.07 E-value=2e+02 Score=29.04 Aligned_cols=24 Identities=13% Similarity=0.361 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 875 SMESIRDSLAEELVKMTAQCEKLR 898 (964)
Q Consensus 875 rLe~qRdeL~eELV~Lt~e~Eelr 898 (964)
.|..+|+.|..-|-+|...+|+..
T Consensus 58 ~l~~tKkhLsqRId~vd~klDe~~ 81 (126)
T PF07889_consen 58 SLSSTKKHLSQRIDRVDDKLDEQK 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344555555555555554444443
No 263
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=36.55 E-value=1e+03 Score=30.52 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 002118 408 RVATLERKVYALTKERDTLRREQN 431 (964)
Q Consensus 408 RI~ALErKlQ~L~KErD~Lrke~a 431 (964)
.+.+++.++....++.+.++....
T Consensus 228 ~~~~lee~~~~~~~e~~~l~~~~e 251 (698)
T KOG0978|consen 228 KVIKLEEKLAQCVKEYEMLRKEFE 251 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHH
Confidence 378899999999999998877543
No 264
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=36.48 E-value=8.3e+02 Score=29.36 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=7.4
Q ss_pred hcCCCccchHHH
Q 002118 616 TQVPESTRPLLR 627 (964)
Q Consensus 616 ssv~eATrPLLR 627 (964)
.+.++...|+.-
T Consensus 159 ~~~~~~~~~~~~ 170 (445)
T PRK13428 159 PSTADVDYPLLA 170 (445)
T ss_pred CCchhhcCchhh
Confidence 356666777763
No 265
>PLN02678 seryl-tRNA synthetase
Probab=36.43 E-value=1e+02 Score=37.00 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=28.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQC 894 (964)
Q Consensus 857 A~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~ 894 (964)
..|-.++.+...++.++..|.+.|+.++.+|-.++...
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~ 70 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAK 70 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 34566777888888888888888888888887655433
No 266
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=36.17 E-value=3.3e+02 Score=30.82 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhhhHHHHH
Q 002118 512 ETIEKHQVELGEQKDYYT 529 (964)
Q Consensus 512 e~iek~q~eL~aqk~~~~ 529 (964)
+..+++..+|..+-..|-
T Consensus 225 dEyEklE~EL~~lY~~Y~ 242 (267)
T PF10234_consen 225 DEYEKLEEELQKLYEIYV 242 (267)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666555443
No 267
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=36.00 E-value=1.1e+03 Score=30.70 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 628 QIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAA 662 (964)
Q Consensus 628 QIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~ 662 (964)
|+..|+.++. . ...+..|...+.++...+.
T Consensus 482 el~~l~~~i~-~----~~~~~~l~~e~~~l~~~l~ 511 (908)
T COG0419 482 ELEELEEELS-R----EKEEAELREEIEELEKELR 511 (908)
T ss_pred HHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHH
Confidence 5666666666 1 3333344444444444443
No 268
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=35.75 E-value=1.2e+03 Score=31.12 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=42.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHH
Q 002118 369 ADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIIN 448 (964)
Q Consensus 369 ~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KErD~Lrke~ak~s~~~a~LkEKDEqIa 448 (964)
.-.+++....+......+-.+++.. ....+..-.|.+|...+|..+..+-+... +.. ...+++|..-++++.
T Consensus 656 ee~~~k~~k~le~~~~~~~~~~~er--~~~~~~~~~~~~r~~~ie~~~~~l~~qke----e~~--~~~~~~I~~~~~~~~ 727 (1072)
T KOG0979|consen 656 EEKKQKERKELEEEQKKLKLLKRER--TKLNSELKSYQQRKERIENLVVDLDRQEE----EYA--ASEAKKILDTEDMRI 727 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHHhHHHHHH
Confidence 3455566666666666666666654 44555667888898888887665544444 222 233445555555554
Q ss_pred H
Q 002118 449 Q 449 (964)
Q Consensus 449 q 449 (964)
+
T Consensus 728 ~ 728 (1072)
T KOG0979|consen 728 Q 728 (1072)
T ss_pred H
Confidence 4
No 269
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.62 E-value=3.4e+02 Score=33.06 Aligned_cols=51 Identities=33% Similarity=0.543 Sum_probs=28.4
Q ss_pred HHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 002118 371 EIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVA-TLERKVYALTKERDTLRREQ 430 (964)
Q Consensus 371 ~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~-ALErKlQ~L~KErD~Lrke~ 430 (964)
+++.|..+|..|+.++++|+.....-+ +||. +++..-+.+.+++++|+.+.
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id---------~~i~~av~~~~~~~~~~~~ql~~~~ 125 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSID---------QQIQQAVQSETQELTKEIEQLKSER 125 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHH---------HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344677778888888888776542222 2332 33334455556666555443
No 270
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=34.88 E-value=5.5e+02 Score=26.86 Aligned_cols=119 Identities=24% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 002118 358 LQGAARQAQAKADEIAKMMNENEHLKAVIEDLKR--KTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSD 435 (964)
Q Consensus 358 l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~--~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KErD~Lrke~ak~s~ 435 (964)
|+..+-.-+.-.-++..|...|.+|..+...-+. +..+..+..+-+.|-+..-.|..++..|-.+.-.|.......++
T Consensus 38 Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~ 117 (158)
T PF09744_consen 38 LESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSD 117 (158)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q ss_pred HHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 436 AAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEK 482 (964)
Q Consensus 436 ~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~ 482 (964)
....|.|.+.. |+.+-..|+. ++...|+++...+.-..-++
T Consensus 118 q~~rlee~e~~---l~~e~~~l~e---r~~e~l~~~~e~ver~k~~~ 158 (158)
T PF09744_consen 118 QSSRLEEREAE---LKKEYNRLHE---RERELLRKLKEHVERQKDEI 158 (158)
T ss_pred hccccchhHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHhcC
No 271
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=34.26 E-value=1.7e+02 Score=30.90 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=44.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 002118 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMT--AQCEKLRAEAAILPGIQAELDALRRRHS 919 (964)
Q Consensus 854 ~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt--~e~Eelr~~~~~v~~Le~el~eLqqRY~ 919 (964)
.....+..++..+..+..+|+.|+...+.+++.||..- .-.-++.+-.+++..|+..+..+...|.
T Consensus 82 t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~~~ 149 (175)
T PRK13182 82 ISSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPIYI 149 (175)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33445566777788888899999999999999998653 3333444444556666666666665553
No 272
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=34.22 E-value=9.3e+02 Score=29.28 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 587 VFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNL 652 (964)
Q Consensus 587 ~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~ 652 (964)
.+|+.+|-.|+..|.+.-.-++..++++-. ||=||++|+.. ||-..=..+.+
T Consensus 402 SaRe~eleqevkrLrq~nr~l~eqneelng-----------tilTls~q~lk---n~ha~~~~~~S 453 (502)
T KOG0982|consen 402 SAREIELEQEVKRLRQPNRILSEQNEELNG-----------TILTLSTQFLK---NWHATFSLFFS 453 (502)
T ss_pred hHHHHHHHHHHHHhccccchhhhhhhhhhh-----------hhhhHHHHHHH---HHHHHHHHHHH
Confidence 378999999999999998889999999987 88999999876 77444443333
No 273
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=34.19 E-value=4e+02 Score=27.58 Aligned_cols=44 Identities=27% Similarity=0.499 Sum_probs=26.7
Q ss_pred HHHHHHHHHHh-HHh--hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 002118 444 DEIINQVMAEG-EEL--SKKQAA-QEAQIRKLRAQIRELEEEKKGLVT 487 (964)
Q Consensus 444 DEqIaqLmeEG-EKL--SKkELq-~sniIKKLRakikE~Eee~~~Lk~ 487 (964)
|++|..+|.+- .-+ .|.... ....++.|+.++.+..++++.|+.
T Consensus 1 ~eqi~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 1 DEQIDKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred ChHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46787777663 334 332221 234567777777777777777765
No 274
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=34.03 E-value=1e+02 Score=29.91 Aligned_cols=75 Identities=23% Similarity=0.330 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHHH
Q 002118 869 YMSRLASMESIRDSLAEELVKMTAQC-EKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEMY 946 (964)
Q Consensus 869 LQ~ELarLe~qRdeL~eELV~Lt~e~-Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEELraDL~DVKeMY 946 (964)
-+.....+++.++.+..||=.||..+ ++.-. -|..-+.+-..++.|-..+=.-|+|+...++-|+.-|..||...
T Consensus 6 e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~---MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~ 81 (100)
T PF06428_consen 6 ERERREEAEQEKEQIESELEELTASLFEEANK---MVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVM 81 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888888999999998866 44443 35666777788888989999999999999999999999998654
No 275
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=33.81 E-value=95 Score=30.10 Aligned_cols=27 Identities=37% Similarity=0.436 Sum_probs=18.6
Q ss_pred HHHhHHHHHHHHhHHHHHHHHHHHHhc
Q 002118 365 AQAKADEIAKMMNENEHLKAVIEDLKR 391 (964)
Q Consensus 365 ~~~k~~~~A~L~e~N~~L~~~~e~l~~ 391 (964)
+.....++++|..+|+.|+.++..|+.
T Consensus 36 ~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 36 VAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 334455666777888888888877775
No 276
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=33.44 E-value=6.4e+02 Score=27.13 Aligned_cols=8 Identities=25% Similarity=0.580 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 002118 593 LRRDIEDL 600 (964)
Q Consensus 593 LR~Eis~L 600 (964)
|+.++.+|
T Consensus 164 Lk~ei~~l 171 (205)
T PRK06231 164 LQKESVEL 171 (205)
T ss_pred HHHHHHHH
Confidence 44444443
No 277
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=33.30 E-value=3.7e+02 Score=27.39 Aligned_cols=76 Identities=21% Similarity=0.215 Sum_probs=43.3
Q ss_pred ccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 002118 328 LSSEANVSVSADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQ 407 (964)
Q Consensus 328 ~~~~~~~~~s~~~~~e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~q 407 (964)
|..+.+...+.++..-.++|.+..+.++..|.....++..+..++.++...++.- ..
T Consensus 6 l~~~~~Pp~~~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d-----------------------~~ 62 (160)
T PF13094_consen 6 LARLPFPPQKREDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERD-----------------------YE 62 (160)
T ss_pred CCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HH
Confidence 3333333333466777889988888888888765444444333333333332222 24
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002118 408 RVATLERKVYALTKERDTL 426 (964)
Q Consensus 408 RI~ALErKlQ~L~KErD~L 426 (964)
.|..|+++.+.+.+++...
T Consensus 63 ~L~~Le~~~~~~~~e~~~~ 81 (160)
T PF13094_consen 63 YLQELEKNAKALEREREEE 81 (160)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666777666666644
No 278
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=33.19 E-value=1.1e+03 Score=29.98 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Q 002118 401 LREEYHQRVATLERKVYALTKERDTLRREQNKK-SDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREL 478 (964)
Q Consensus 401 L~eEy~qRI~ALErKlQ~L~KErD~Lrke~ak~-s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~ 478 (964)
+...-.++|..|..+++.+.+.-..++...... ......+++=..+|..|-.....|=.+. ......|||+.+|-|+
T Consensus 235 ~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eL 312 (670)
T KOG0239|consen 235 LESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILEL 312 (670)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 333333445555555555555544443333221 2223333333444555555555544444 4444444555444433
No 279
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=33.09 E-value=1.2e+02 Score=27.45 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=21.6
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHHHHhc
Q 002118 362 ARQAQAKADEIAKMMNENEHLKAVIEDLKR 391 (964)
Q Consensus 362 ~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~ 391 (964)
.++++....++..++.+|++|+.++..|..
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345555666777888888888888877664
No 280
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=33.06 E-value=1.3e+02 Score=35.79 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=26.5
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 859 LRQKEGELASYMSRLASMESIRDSLAEELVKMTA 892 (964)
Q Consensus 859 LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~ 892 (964)
|-.++.+...++.++..|.+.|..++.+|-.++.
T Consensus 30 i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~ 63 (425)
T PRK05431 30 LLELDEERRELQTELEELQAERNALSKEIGQAKR 63 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556777888888888888888888888876554
No 281
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=32.40 E-value=6.3e+02 Score=30.07 Aligned_cols=57 Identities=16% Similarity=0.312 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 002118 593 LRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTAR----RAEAWAAVERSLNLRLQEAEAK 660 (964)
Q Consensus 593 LR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~as----qsenWe~iE~sL~~RLaeaE~~ 660 (964)
|...+..+..++..++.+..++.. ||..||.++.. +...|--.|.-..-|++.-...
T Consensus 90 l~~~~~~~~~~l~~~e~~~~~l~~-----------q~~~Lq~~~~~ls~~~~~dWlLaEaeyLlrlA~qkL~ 150 (390)
T PRK10920 90 LEGILKQQAKALDQANRQQAALAK-----------QLDELQQKVATISGSDAKTWLLAQADFLVKLAGRKLW 150 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHH
Confidence 555566666677777777666555 88889888875 4489999998888888875443
No 282
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=32.02 E-value=2.8e+02 Score=25.77 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=39.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 854 AFESILRQKEGELASYMSRLASM------------ESIRDSLAEELVKMTAQCEKLRAEA 901 (964)
Q Consensus 854 ~LqA~LRqrEGEla~LQ~ELarL------------e~qRdeL~eELV~Lt~e~Eelr~~~ 901 (964)
.|...|+.++-|+.+++-+...| .+.|..|..+|-.|....|.....+
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI 73 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQI 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999988 3578888888888887766655443
No 283
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=31.98 E-value=5.2e+02 Score=27.70 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHH
Q 002118 865 ELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKE 944 (964)
Q Consensus 865 Ela~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEELraDL~DVKe 944 (964)
++-.++.....+...++.+..++..-..+...+. ..+..|+..+-+|+..-..+=.+...+.-++..|+.++..++.
T Consensus 97 kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e---~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~ 173 (190)
T PF05266_consen 97 KLLSLKDDQEKLLEERKKLEKKIEEKEAELKELE---SEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKE 173 (190)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556555555666655555555533333333 3466777777777776666666666677777777776666643
No 284
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=31.83 E-value=8.1e+02 Score=27.85 Aligned_cols=17 Identities=12% Similarity=0.356 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002118 645 AVERSLNLRLQEAEAKA 661 (964)
Q Consensus 645 ~iE~sL~~RLaeaE~~l 661 (964)
.||+.|..-+..+..++
T Consensus 162 ~iE~~l~~ai~~~~~~~ 178 (267)
T PF10234_consen 162 EIEKALKEAIKAVQQQL 178 (267)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666655555544443
No 285
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.54 E-value=1.2e+03 Score=29.85 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=19.6
Q ss_pred HHHHHhccchhHHHHHHHhHHHHHHHHHH
Q 002118 920 AALELMGERDEELEELRADIMDLKEMYRE 948 (964)
Q Consensus 920 TlLEMlGEKsEeVEELraDL~DVKeMYR~ 948 (964)
-++.-+-.+-...++|++.+.++|+..+.
T Consensus 549 pt~~~~~~~k~~~e~LqaE~~~lk~~l~~ 577 (716)
T KOG4593|consen 549 PTSKARQIKKNRLEELQAELERLKERLTA 577 (716)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677778888888888775443
No 286
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=31.40 E-value=8.5e+02 Score=27.95 Aligned_cols=60 Identities=17% Similarity=0.312 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 688 QISCLRAEQTQLTKSLEKERQRAA-------ENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQ 747 (964)
Q Consensus 688 els~lR~e~~~Lq~qLE~Er~r~~-------~~r~e~~aakeE~~~le~r~~qLEeeL~elr~k~~~ 747 (964)
++..+...-..|+.+|..+-.+-. ++-.-+...+.+......++..||.+...++.+|..
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~ 269 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEK 269 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555554443332 344456667788888888999999999999998865
No 287
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=31.39 E-value=1e+03 Score=29.01 Aligned_cols=11 Identities=0% Similarity=0.084 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 002118 634 ETTARRAEAWA 644 (964)
Q Consensus 634 aQ~asqsenWe 644 (964)
+|+.++..-|+
T Consensus 328 sqleSqr~y~e 338 (493)
T KOG0804|consen 328 SQLESQRKYYE 338 (493)
T ss_pred hhhhHHHHHHH
Confidence 33334444443
No 288
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=31.05 E-value=8.7e+02 Score=27.97 Aligned_cols=67 Identities=30% Similarity=0.446 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 597 IEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLS 676 (964)
Q Consensus 597 is~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~ 676 (964)
|.+|.-||.+.+.|.++=-+ -|+-|.+|++.=++-|=.
T Consensus 70 iRHLkakLkes~~~l~dRet-----------EI~eLksQL~RMrEDWIE------------------------------- 107 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRET-----------EIDELKSQLARMREDWIE------------------------------- 107 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHH-----------HHHHHHHHHHHHHHHHHH-------------------------------
Confidence 34455555555555555322 477777787777777721
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 002118 677 QTLSRINVLEAQIS--CLRAEQTQLTKSLEKERQ 708 (964)
Q Consensus 677 e~~~ri~~LE~els--~lR~e~~~Lq~qLE~Er~ 708 (964)
..|.+.|+||+ .+|.|+.+|+.-++.-|.
T Consensus 108 ---EECHRVEAQLALKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 108 ---EECHRVEAQLALKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 13556666654 466677777766666553
No 289
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=30.93 E-value=2.5e+02 Score=30.50 Aligned_cols=63 Identities=29% Similarity=0.398 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 002118 347 LKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVY 417 (964)
Q Consensus 347 l~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ 417 (964)
+.-+|..++..|.. +.-.|-+.|+.+.+....+.....++..+-. .+ +--|-.||..||++|-
T Consensus 87 l~~~i~~le~~lvd---~~~~kd~~i~~~~~~l~~~~~r~~el~~~r~-~e----~~~YesRI~dLE~~L~ 149 (196)
T PF15272_consen 87 LQSRISNLEKQLVD---QMIEKDREIRTLQDELLSLELRNKELQNERE-RE----RIAYESRIADLERQLN 149 (196)
T ss_pred HHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH-HH----HHHHHHHHHHHHHHHH
Confidence 34455555555532 1224556677777777777666666665432 22 4478889999998885
No 290
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=30.90 E-value=7.7e+02 Score=27.29 Aligned_cols=85 Identities=22% Similarity=0.288 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Q 002118 399 ETLREEYHQRVATLERKVYALTKERDTLRREQNKK----SDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQ 474 (964)
Q Consensus 399 ~~L~eEy~qRI~ALErKlQ~L~KErD~Lrke~ak~----s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRak 474 (964)
.++++-...-++.||--+..|+.-...-+++.--+ ..+-++|--||+-|..||+ |.-.+.+-+..|.-|+++
T Consensus 7 ~StrerLL~~~dDlE~i~kelie~l~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~llk----la~eq~k~e~~m~~Lea~ 82 (272)
T KOG4552|consen 7 RSTRERLLESADDLEHIVKELIETLINRDKQKMLKNGETVNILKLLDSKDDEFKTLLK----LAPEQQKREQLMRTLEAH 82 (272)
T ss_pred ccHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHhcchHHHHHHHHHhccHHHHHHHH----HhHhHHHHHHHHHHHHHH
Confidence 35567777778888877666654443222232211 2345688899999999984 677777777788888888
Q ss_pred HHHHHHHHHHHHh
Q 002118 475 IRELEEEKKGLVT 487 (964)
Q Consensus 475 ikE~Eee~~~Lk~ 487 (964)
+.-..+.+..|++
T Consensus 83 VEkrD~~IQqLqk 95 (272)
T KOG4552|consen 83 VEKRDEVIQQLQK 95 (272)
T ss_pred HHHhHHHHHHHHH
Confidence 7766666666654
No 291
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=30.66 E-value=9.2e+02 Score=28.13 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 623 RPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAA 662 (964)
Q Consensus 623 rPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~ 662 (964)
.-|+||||.-|..+-. +|+.-.+++.+.|+---
T Consensus 10 ~EL~kQiEIcqEENki-------LdK~hRQKV~EVEKLsq 42 (351)
T PF07058_consen 10 QELMKQIEICQEENKI-------LDKMHRQKVLEVEKLSQ 42 (351)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 3588999999988766 67777777777776433
No 292
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=30.15 E-value=7.2e+02 Score=26.73 Aligned_cols=100 Identities=23% Similarity=0.271 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhHHHHHHHHH
Q 002118 653 RLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKE----------RQRAAENRQEYLAAKE 722 (964)
Q Consensus 653 RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~E----------r~r~~~~r~e~~aake 722 (964)
-|..+..+.+....++......+.++......|-.-|..++.+...|+.+|..+ +.++.....++...+-
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~ 107 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKW 107 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444555555555555555655555555555555432 2222222233333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 723 EADTQEGRANQLEEEIKELRRKHKQELQEA 752 (964)
Q Consensus 723 E~~~le~r~~qLEeeL~elr~k~~~elqea 752 (964)
+...++.+..+++.+..+|..++...+.+.
T Consensus 108 e~evL~qr~~kle~ErdeL~~kf~~~i~ev 137 (201)
T PF13851_consen 108 EHEVLEQRFEKLEQERDELYRKFESAIQEV 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666667666666665544433
No 293
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.71 E-value=7.1e+02 Score=27.30 Aligned_cols=93 Identities=19% Similarity=0.368 Sum_probs=60.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhHH
Q 002118 855 FESILRQKEGELASYMSRLAS-----------------------MESIRDSLAEELVKMTA---QCEKLRAEAAILPGIQ 908 (964)
Q Consensus 855 LqA~LRqrEGEla~LQ~ELar-----------------------Le~qRdeL~eELV~Lt~---e~Eelr~~~~~v~~Le 908 (964)
+.--|.+++.|++.++.+|++ .+.+|+.|...--.|.. -++.|+..-.-|..|+
T Consensus 31 ve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK 110 (218)
T KOG1655|consen 31 VEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMK 110 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666653 46677777766555443 2345665556667777
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHH
Q 002118 909 AELDALRRRHSAALELMGERDEELEELRADIMDLKEMYREQVNLL 953 (964)
Q Consensus 909 ~el~eLqqRY~TlLEMlGEKsEeVEELraDL~DVKeMYR~QID~L 953 (964)
.-+++|..-|-+. +...+|-|+.++.|+=++--+.-+-|
T Consensus 111 ~~~k~mK~~ykkv------nId~IedlQDem~Dlmd~a~EiQE~L 149 (218)
T KOG1655|consen 111 DTNKEMKKQYKKV------NIDKIEDLQDEMEDLMDQADEIQEVL 149 (218)
T ss_pred HHHHHHHHHHccC------CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766553 78899999999999876655544333
No 294
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=29.58 E-value=2.2e+02 Score=28.17 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHh
Q 002118 344 LEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLK 390 (964)
Q Consensus 344 ~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~ 390 (964)
+..|-..|..|-..+.+-..+++.+..+++.|.-+|+.|+..+..+.
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455566666666666667777889999999999999999999873
No 295
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=29.56 E-value=1.3e+03 Score=29.71 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=14.5
Q ss_pred cccCCCCCchhhhhhhhH
Q 002118 7 KVSLGNFPDLAGAVNKFS 24 (964)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~ 24 (964)
...||+|+|+...+.++.
T Consensus 59 ~~~l~~~~di~~~l~r~~ 76 (771)
T TIGR01069 59 NVRFFGFEDIRELLKRAE 76 (771)
T ss_pred cCCcCCCccHHHHHHHHh
Confidence 357899999998888776
No 296
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=29.40 E-value=2e+02 Score=26.73 Aligned_cols=49 Identities=22% Similarity=0.288 Sum_probs=40.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccc----hhHHH-------HHHHhHHHHHHHHHHHHHH
Q 002118 904 LPGIQAELDALRRRHSAALELMGER----DEELE-------ELRADIMDLKEMYREQVNL 952 (964)
Q Consensus 904 v~~Le~el~eLqqRY~TlLEMlGEK----sEeVE-------ELraDL~DVKeMYR~QID~ 952 (964)
-+-|..-+.|++.|-.++|-|++|- .+..| +|=.=|+|+-.+||.+.++
T Consensus 13 skWL~~~l~dmd~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAer 72 (74)
T PF07765_consen 13 SKWLQENLSDMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAER 72 (74)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHh
Confidence 4557888999999999999999873 34555 8888899999999998765
No 297
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=29.06 E-value=5.3e+02 Score=24.86 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 627 RQIEAIQETTARRAEAWAAVERSLNLRLQEAE 658 (964)
Q Consensus 627 RQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE 658 (964)
|.|..+|..+..........+..+..|-..+.
T Consensus 7 re~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~ 38 (126)
T PF13863_consen 7 REMFLVQLALDTKREEIERREEQLKQREEELE 38 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544444333
No 298
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.86 E-value=9.1e+02 Score=27.48 Aligned_cols=31 Identities=13% Similarity=0.080 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 584 QQAVFREDMLRRDIEDLQRRYQASERRCEEL 614 (964)
Q Consensus 584 q~a~~rEeeLR~Eis~Le~RLEeaEsRaEEL 614 (964)
-.+..++..+.+|...|+.....++.-+.++
T Consensus 200 ~~~aa~~a~~~~e~a~l~~qka~a~a~a~~~ 230 (265)
T COG3883 200 AALAAKEASALGEKAALEEQKALAEAAAAEA 230 (265)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666667766664444444444333
No 299
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=28.71 E-value=2.7e+02 Score=33.04 Aligned_cols=72 Identities=18% Similarity=0.321 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 406 HQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGL 485 (964)
Q Consensus 406 ~qRI~ALErKlQ~L~KErD~Lrke~ak~s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~L 485 (964)
+.+|-.+..+...+..+.+.|+.+.+..+. .| ..++..|+.. .+ .....+|.|+.+|++++.++..+
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk---~i-------~~~~~~~~~~-~~--~l~~~~~~l~~~~~~~~~~~~~~ 95 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSK---QI-------GKAKGQKKDK-IE--EIKKELKELKEELTELSAALKAL 95 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-------HHHhccCcch-HH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666677777777666544332 11 1122222110 00 12223555666666666666666
Q ss_pred HhHHH
Q 002118 486 VTKLQ 490 (964)
Q Consensus 486 k~Kle 490 (964)
..++.
T Consensus 96 ~~~~~ 100 (418)
T TIGR00414 96 EAELQ 100 (418)
T ss_pred HHHHH
Confidence 55444
No 300
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=28.61 E-value=2.8e+02 Score=24.89 Aligned_cols=18 Identities=39% Similarity=0.462 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002118 650 LNLRLQEAEAKAAASEER 667 (964)
Q Consensus 650 L~~RLaeaE~~l~~A~eR 667 (964)
|..||.++|.+++-....
T Consensus 2 le~Ri~~LE~~la~qe~~ 19 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDT 19 (69)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556777777766544443
No 301
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=28.49 E-value=1.1e+02 Score=35.53 Aligned_cols=110 Identities=15% Similarity=0.254 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 594 RRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNE 673 (964)
Q Consensus 594 R~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eREr~~~e 673 (964)
++++..+..||-++|.....|..+++. +..+|.+++..+......=..+.-
T Consensus 27 ~GDLs~I~eRLsaLEssv~sL~~SVs~-----------------------------lss~iSdLss~L~~l~~sl~~~~s 77 (326)
T PF04582_consen 27 PGDLSPIRERLSALESSVASLSDSVSS-----------------------------LSSTISDLSSDLQDLASSLADMTS 77 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888887653 223333333333333332233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 674 RLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHK 746 (964)
Q Consensus 674 kl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er~r~~~~r~e~~aakeE~~~le~r~~qLEeeL~elr~k~~ 746 (964)
.+..+...+..+...+..+-.....|...+-... ..+..++..+..+..++-+++....
T Consensus 78 ~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~--------------ssIS~Lqs~v~~lsTdvsNLksdVS 136 (326)
T PF04582_consen 78 ELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHS--------------SSISDLQSSVSALSTDVSNLKSDVS 136 (326)
T ss_dssp ------------------------------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhh--------------hhHHHHHHhhhhhhhhhhhhhhhhh
Confidence 4444444555555555555555555554444322 4455566667777888888877764
No 302
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=28.30 E-value=1e+03 Score=28.03 Aligned_cols=107 Identities=22% Similarity=0.262 Sum_probs=52.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHhc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---HHh
Q 002118 370 DEIAKMMNENEHLKAVIEDLKR-----KTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAA---LLK 441 (964)
Q Consensus 370 ~~~A~L~e~N~~L~~~~e~l~~-----~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KErD~Lrke~ak~s~~~a---~Lk 441 (964)
.+-..|.-+|++|+.++..++. +..-.-++.+---..++=.-+|-+|+.+.+|+- + +...... .|+
T Consensus 99 ~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~----E--keeesq~LnrELa 172 (401)
T PF06785_consen 99 QESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECG----E--KEEESQTLNRELA 172 (401)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh----H--hHHHHHHHHHHHH
Confidence 3456788888998888876654 222222333333333444455666665555553 1 1111222 233
Q ss_pred hHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 442 EKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGL 485 (964)
Q Consensus 442 EKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~L 485 (964)
|-=..++.|-+|=+. +--.+.+.|+|=.+.|..+|..+..|
T Consensus 173 E~layqq~L~~eyQa---tf~eq~~ml~kRQ~yI~~LEsKVqDL 213 (401)
T PF06785_consen 173 EALAYQQELNDEYQA---TFVEQHSMLDKRQAYIGKLESKVQDL 213 (401)
T ss_pred HHHHHHHHHHHHhhc---ccccchhhhHHHHHHHHHHHHHHHHH
Confidence 333334444444322 22334455666555665555544444
No 303
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=28.09 E-value=7.5e+02 Score=26.24 Aligned_cols=43 Identities=21% Similarity=0.388 Sum_probs=29.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHH
Q 002118 902 AILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDLKEMYREQVN 951 (964)
Q Consensus 902 ~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEELraDL~DVKeMYR~QID 951 (964)
.+...|+.++..|++++..+- .+++.|..++.-+++=|+++|.
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le-------~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELE-------KELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777766553 3577778888888888888874
No 304
>PF02044 Bombesin: Bombesin-like peptide; InterPro: IPR000874 Bombesin-like peptides comprise a large family of peptides which were initially isolated from amphibian skin, where they stimulate smooth muscle contraction. They were later found to be widely distributed in mammalian neural and endocrine cells. The amphibian peptides which belong to this family are currently classified into three subfamilies [, ]; the Bombesin group, which includes bombesin and alytesin; the Ranatensin group, which includes ranatensins, litorin, and Rohdei litorin; and the Phyllolitorin group, which includes Leu(8)- and Phe(8)-phyllolitorins. In mammals and birds two categories of bombesin-like peptides are known [, ], gastrin-releasing peptide (GRP), which stimulates the release of gastrin as well as other gastrointestinal hormones, and neuromedin B (NMB), a neuropeptide whose function is not yet clear. Bombesin-like peptides, like many other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. The final peptides are eight to fourteen residues long.; GO: 0007218 neuropeptide signaling pathway; PDB: 1C9A_A 1C98_A.
Probab=28.06 E-value=23 Score=23.00 Aligned_cols=12 Identities=58% Similarity=1.013 Sum_probs=6.5
Q ss_pred cchhhhhcccCC
Q 002118 59 LWPVMSFMGHKS 70 (964)
Q Consensus 59 ~~~~~~~~~~~~ 70 (964)
.|.|=.|||.||
T Consensus 3 ~WAvGh~Mgkks 14 (14)
T PF02044_consen 3 QWAVGHFMGKKS 14 (14)
T ss_dssp TCHHHCT-----
T ss_pred ccceeeeeccCC
Confidence 699999999886
No 305
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=28.02 E-value=3.9e+02 Score=30.56 Aligned_cols=87 Identities=20% Similarity=0.278 Sum_probs=49.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccch-
Q 002118 854 AFESILRQKEGELASYMSRLASMES---IRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERD- 929 (964)
Q Consensus 854 ~LqA~LRqrEGEla~LQ~ELarLe~---qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKs- 929 (964)
.+.+.|+.+...+..++.++..... ..+....-+ ..- +.....++..|...+.+++..|..++++|||..
T Consensus 278 ~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~---~~f---~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~ 351 (370)
T PF02181_consen 278 ELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKM---KEF---LEEAETKLDELQELYEELEEAFKQLLQYFGEDPK 351 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHH---HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHH---HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4555555555555555555544433 112222212 112 233334578899999999999999999999955
Q ss_pred -hHHHHHHHhHHHHHHHH
Q 002118 930 -EELEELRADIMDLKEMY 946 (964)
Q Consensus 930 -EeVEELraDL~DVKeMY 946 (964)
-..++.=.-|.+.-.+|
T Consensus 352 ~~~~~~ff~~l~~F~~~f 369 (370)
T PF02181_consen 352 KMSPEEFFKILSQFIDMF 369 (370)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 45555555555555554
No 306
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=27.98 E-value=3.5e+02 Score=32.14 Aligned_cols=68 Identities=22% Similarity=0.281 Sum_probs=43.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----hhhhhHHHHHHHHHHHHHHHHHH
Q 002118 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQC----EKLRAEA----AILPGIQAELDALRRRHSAALEL 924 (964)
Q Consensus 857 A~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~----Eelr~~~----~~v~~Le~el~eLqqRY~TlLEM 924 (964)
..|-.++.+...++.++..|.+.|+.++.+|-.++... +.+.+++ +++..|+.++.+++..+..+|.-
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLS 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777888888999999999999999997765432 2332222 33455555555555555555443
No 307
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=27.90 E-value=6.1e+02 Score=25.19 Aligned_cols=90 Identities=20% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 628 QIEA--IQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEK 705 (964)
Q Consensus 628 QIEt--LQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~ 705 (964)
||++ |+.||.+-..--..-=-.|-.|+-+++...+-+..-.......+..+...-..+..++..++.....+...++.
T Consensus 16 QIe~~rL~Eq~EaE~FELk~~vL~lE~rvleLel~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~~a~~k~~~~ 95 (108)
T PF14739_consen 16 QIETNRLREQHEAEKFELKNEVLRLENRVLELELHGDKAAPQIADLRHRLAEAQEDRQELQEEYVSLKKNYQALPKAFEA 95 (108)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q ss_pred HHHHHHHhHHHH
Q 002118 706 ERQRAAENRQEY 717 (964)
Q Consensus 706 Er~r~~~~r~e~ 717 (964)
+..+...+-.++
T Consensus 96 e~~k~qeL~~eL 107 (108)
T PF14739_consen 96 EVAKNQELGLEL 107 (108)
T ss_pred HHHHHHHHhhcc
No 308
>PRK14127 cell division protein GpsB; Provisional
Probab=27.88 E-value=2.9e+02 Score=27.35 Aligned_cols=48 Identities=25% Similarity=0.481 Sum_probs=25.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhcccchHH----------HHHHHHH--HHHHHHHHHHHHH
Q 002118 369 ADEIAKMMNENEHLKAVIEDLKRKTNDAE----------LETLREE--YHQRVATLERKVY 417 (964)
Q Consensus 369 ~~~~A~L~e~N~~L~~~~e~l~~~~~~~~----------~~~L~eE--y~qRI~ALErKlQ 417 (964)
.++++.|.++|..|+..+..+........ ..+ ..- -..||+.||+.+.
T Consensus 43 ~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~-~tn~DiLKRls~LEk~VF 102 (109)
T PRK14127 43 QKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSS-ATNYDILKRLSNLEKHVF 102 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCC-cchHHHHHHHHHHHHHHh
Confidence 44555666666666666655554311000 000 011 2589999999885
No 309
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=27.59 E-value=2.1e+02 Score=32.14 Aligned_cols=16 Identities=6% Similarity=-0.093 Sum_probs=6.9
Q ss_pred chhccCCCCCCCCCcc
Q 002118 136 FVVSEHGKVDSESNIV 151 (964)
Q Consensus 136 ~~~~~~~~~~~~~~~~ 151 (964)
..+.|.+.......+.
T Consensus 42 ~~~~~~~~~~~~~~l~ 57 (269)
T KOG3119|consen 42 EALQDLDVGLSNVDLP 57 (269)
T ss_pred hhcccccccccccCCc
Confidence 3444444444444444
No 310
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=27.54 E-value=4e+02 Score=25.81 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=31.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEA 901 (964)
Q Consensus 857 A~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~ 901 (964)
..+-..-.+...++.+|..++..|-.+...-+.|+.++.++..+.
T Consensus 3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~ 47 (106)
T PF05837_consen 3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQ 47 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455567777788888888888877777777777766666543
No 311
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=27.43 E-value=5.5e+02 Score=31.12 Aligned_cols=20 Identities=5% Similarity=0.051 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002118 642 AWAAVERSLNLRLQEAEAKA 661 (964)
Q Consensus 642 nWe~iE~sL~~RLaeaE~~l 661 (964)
.|..+-..+..++.++..++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~ 147 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTED 147 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544443
No 312
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=26.97 E-value=1.2e+03 Score=28.22 Aligned_cols=119 Identities=16% Similarity=0.221 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhc-------ccchHHHHHHHHHHHHHHHHHH
Q 002118 341 VCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKR-------KTNDAELETLREEYHQRVATLE 413 (964)
Q Consensus 341 ~~e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~-------~~~~~~~~~L~eEy~qRI~ALE 413 (964)
..|++.|+++|.-|-+.+..-.. .+......++.++..++. .++-.-++.-+..|..+-+.|-
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~----------~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll 219 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQS----------EVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLL 219 (424)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHH
Confidence 77899999998887766654222 222222333333333322 1334456666777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Q 002118 414 RKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQ 474 (964)
Q Consensus 414 rKlQ~L~KErD~Lrke~ak~s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRak 474 (964)
.|+-.|..=.+.||+.+. ....+=.--++..++.+-..+.+.--.+...|+.++-.
T Consensus 220 ~kVdDLQD~VE~LRkDV~-----~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~ 275 (424)
T PF03915_consen 220 TKVDDLQDLVEDLRKDVV-----QRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPI 275 (424)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 777777766777777653 22222333456667777666666666666666665543
No 313
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=26.85 E-value=1.3e+03 Score=28.47 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002118 730 RANQLEEEIKELRRKHK 746 (964)
Q Consensus 730 r~~qLEeeL~elr~k~~ 746 (964)
.+..++.++..++.++.
T Consensus 347 ~le~L~~el~~l~~~l~ 363 (563)
T TIGR00634 347 SLEALEEEVDKLEEELD 363 (563)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555543
No 314
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=26.72 E-value=2.6e+02 Score=24.25 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 862 KEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAE 900 (964)
Q Consensus 862 rEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~ 900 (964)
+...+..|...+..|+..-+.|..++..|..++..|...
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334566667777777777777777777777766666544
No 315
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=26.66 E-value=1.5e+03 Score=29.37 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=28.8
Q ss_pred HHHHhHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHHH
Q 002118 373 AKMMNENEHLKAVIEDLKRKT-------NDAELETLREEYHQRVATL 412 (964)
Q Consensus 373 A~L~e~N~~L~~~~e~l~~~~-------~~~~~~~L~eEy~qRI~AL 412 (964)
..|+.+.+.|+.+|-..+..+ -..-|+-|++||-++++++
T Consensus 432 ~~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A 478 (762)
T PLN03229 432 RELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEA 478 (762)
T ss_pred ccHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 457777888888877664221 1256889999999999874
No 316
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=26.64 E-value=8.9e+02 Score=26.65 Aligned_cols=65 Identities=32% Similarity=0.411 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHhHHHHHHHHHHHHhccc--chHHHHHHHHHH
Q 002118 341 VCELEKLKREMKMMETALQGAA-RQAQAKADEIAKMMNENEHLKAVIEDLKRKT--NDAELETLREEY 405 (964)
Q Consensus 341 ~~e~ekl~~~~~~~~~~l~~~~-r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~--~~~~~~~L~eEy 405 (964)
-..|++|++.|..++..|..+. +--+.|..-.........-=+..++-|.+|+ +..|++..++=|
T Consensus 31 Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Ly 98 (207)
T PF05546_consen 31 YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELY 98 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHH
Confidence 4689999999999999999873 2223333333333444444444556677775 456765555444
No 317
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=26.58 E-value=2.5e+02 Score=24.75 Aligned_cols=9 Identities=33% Similarity=0.789 Sum_probs=3.3
Q ss_pred hHHHHHHHH
Q 002118 938 DIMDLKEMY 946 (964)
Q Consensus 938 DL~DVKeMY 946 (964)
.|.||=.+|
T Consensus 36 nvk~ll~lY 44 (55)
T PF05377_consen 36 NVKDLLSLY 44 (55)
T ss_pred HHHHHHHHH
Confidence 333333333
No 318
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=26.51 E-value=5.1e+02 Score=25.83 Aligned_cols=31 Identities=32% Similarity=0.381 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 002118 678 TLSRINVLEAQISCLRAEQTQL-TKSLEKERQ 708 (964)
Q Consensus 678 ~~~ri~~LE~els~lR~e~~~L-q~qLE~Er~ 708 (964)
+..+|+.||.+++..+..+.+. ...||.+++
T Consensus 5 mElrIkdLeselsk~Ktsq~d~~~~eLEkYkq 36 (111)
T PF12001_consen 5 MELRIKDLESELSKMKTSQEDSNKTELEKYKQ 36 (111)
T ss_pred HHHHHHHHHHHHHHhHhHhhhhhHHHHHHHHH
Confidence 4557899999999988777766 677887763
No 319
>PRK11546 zraP zinc resistance protein; Provisional
Probab=26.47 E-value=3.6e+02 Score=27.94 Aligned_cols=73 Identities=21% Similarity=0.242 Sum_probs=40.9
Q ss_pred cccCCChh---HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 002118 846 YVKSMTPS---AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAA 921 (964)
Q Consensus 846 ~~~s~tpS---~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~Tl 921 (964)
++..+||+ .++.....-..+...|+.+|- +.|.+|+..+..=.-.-+.+++..+++..|+.+|.++..-|+.-
T Consensus 40 ~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~---aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~ 115 (143)
T PRK11546 40 NAAPLTTEQQAAWQKIHNDFYAQTSALRQQLV---SKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIA 115 (143)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567886 456666666666666665543 45565555554444344445555555666666655555544443
No 320
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.27 E-value=6e+02 Score=28.83 Aligned_cols=30 Identities=37% Similarity=0.778 Sum_probs=27.4
Q ss_pred HHHHhccchhHHHHHHHhHHHHHHHHHHHH
Q 002118 921 ALELMGERDEELEELRADIMDLKEMYREQV 950 (964)
Q Consensus 921 lLEMlGEKsEeVEELraDL~DVKeMYR~QI 950 (964)
-+.|.-|+.+.+++|..||.||-+||+.+=
T Consensus 171 ~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~ 200 (269)
T KOG0811|consen 171 QLDLIEEREQAIEQLEADIIDVNEIFKDLG 200 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999875
No 321
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=25.76 E-value=7.8e+02 Score=25.67 Aligned_cols=9 Identities=22% Similarity=0.217 Sum_probs=5.3
Q ss_pred HHHHHHHHH
Q 002118 592 MLRRDIEDL 600 (964)
Q Consensus 592 eLR~Eis~L 600 (964)
+||.++.+|
T Consensus 119 elr~eva~L 127 (154)
T PRK06568 119 ELQDEFCDE 127 (154)
T ss_pred HHHHHHHHH
Confidence 466666655
No 322
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=25.74 E-value=1.1e+02 Score=29.12 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=18.9
Q ss_pred HHHHhHHHHHHHHhHHHHHHHHHHHHhc
Q 002118 364 QAQAKADEIAKMMNENEHLKAVIEDLKR 391 (964)
Q Consensus 364 ~~~~k~~~~A~L~e~N~~L~~~~e~l~~ 391 (964)
++....+++++|..+|++|+.+..-...
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~ 51 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAET 51 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456788888888888876654333
No 323
>PF15294 Leu_zip: Leucine zipper
Probab=25.69 E-value=1.1e+03 Score=27.17 Aligned_cols=135 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred ccCcccccccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhc----cc
Q 002118 318 DSGIVSEEQRLSSEANVSVSADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKR----KT 393 (964)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~s~~~~~e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~----~~ 393 (964)
....+.....|.+...+..++=-+-|+.+|+.+-..|-..|..-+.+.-.-.++..+|..+...|+......+. ..
T Consensus 108 ~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~ 187 (278)
T PF15294_consen 108 KPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSF 187 (278)
T ss_pred CccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------------------hHHHHHHhhHHH
Q 002118 394 NDAELETLREEYHQRVATLERKVYALTKERDTLRREQNKK----------------------------SDAAALLKEKDE 445 (964)
Q Consensus 394 ~~~~~~~L~eEy~qRI~ALErKlQ~L~KErD~Lrke~ak~----------------------------s~~~a~LkEKDE 445 (964)
+..++..|-.-...==+.+++.+.........|.-.+... ..+...|.-|.+
T Consensus 188 ~~q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~ 267 (278)
T PF15294_consen 188 KAQDLSDLENKMAALKSELEKALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNE 267 (278)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccH
Q ss_pred HHHHHHH
Q 002118 446 IINQVMA 452 (964)
Q Consensus 446 qIaqLme 452 (964)
+|+.|+.
T Consensus 268 QiKeLRk 274 (278)
T PF15294_consen 268 QIKELRK 274 (278)
T ss_pred HHHHHHH
No 324
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=25.56 E-value=1.1e+03 Score=27.39 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 665 EERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLE 704 (964)
Q Consensus 665 ~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE 704 (964)
.-||..++..+..+-.+.+++..+++.+|..+.+++-.++
T Consensus 265 ~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~ 304 (384)
T KOG0972|consen 265 ASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVS 304 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 3445555555555555555555556655555555554444
No 325
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=25.53 E-value=5.6e+02 Score=27.16 Aligned_cols=55 Identities=22% Similarity=0.355 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002118 563 ERETMLVQALEELRQTLSRTEQQ-AVFREDMLRRDIEDLQRRYQASERRCEELVTQ 617 (964)
Q Consensus 563 Ere~~L~qqIedLRe~LeRaeq~-a~~rEeeLR~Eis~Le~RLEeaEsRaEELSss 617 (964)
.+...+..+|.+|...+..-... ..-+=...|.||.+|..+|+.+|.|...+...
T Consensus 92 ~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~ 147 (175)
T PRK13182 92 AQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPI 147 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334555666666666543221 22344557789999999999999998887764
No 326
>PLN02320 seryl-tRNA synthetase
Probab=25.33 E-value=2.9e+02 Score=33.83 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 002118 468 IRKLRAQIRELEEEKKGLVTKLQV 491 (964)
Q Consensus 468 IKKLRakikE~Eee~~~Lk~Kle~ 491 (964)
+|.|+.++++++.++..+..++..
T Consensus 139 ~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 139 GKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666665555554443
No 327
>PRK14143 heat shock protein GrpE; Provisional
Probab=25.27 E-value=9.5e+02 Score=26.79 Aligned_cols=78 Identities=14% Similarity=0.182 Sum_probs=41.6
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Q 002118 335 SVSADSVCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLER 414 (964)
Q Consensus 335 ~~s~~~~~e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALEr 414 (964)
.++++...++..|..++..++..+. .+.+...++...++|++....+=+.......+..+-..+.-=||.|++
T Consensus 60 ~~~~~~~~~~~~l~~el~~l~~e~~-------elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLer 132 (238)
T PRK14143 60 ETAADNAARLAQLEQELESLKQELE-------ELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFER 132 (238)
T ss_pred CccccchhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3445666677777666655544443 223344455556666655554333333334455556666666666666
Q ss_pred HHHHH
Q 002118 415 KVYAL 419 (964)
Q Consensus 415 KlQ~L 419 (964)
-+..+
T Consensus 133 Al~~~ 137 (238)
T PRK14143 133 ARQQL 137 (238)
T ss_pred HHhcc
Confidence 66543
No 328
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=25.19 E-value=9e+02 Score=26.24 Aligned_cols=93 Identities=12% Similarity=0.170 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc----CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 592 MLRRDIEDLQRRYQASERRCEELVTQ----VPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEER 667 (964)
Q Consensus 592 eLR~Eis~Le~RLEeaEsRaEELSss----v~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eR 667 (964)
.|+.-|...=..+..+....+.+... .+....-=+.+++..-.+....-..|+.-=..++.+|.........+...
T Consensus 42 ~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~ 121 (240)
T PF12795_consen 42 EYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQ 121 (240)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 34444444444444444444444332 11222222667777777777777778877777788888877777777666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002118 668 ERSVNERLSQTLSRINV 684 (964)
Q Consensus 668 Er~~~ekl~e~~~ri~~ 684 (964)
=.+++.++.++..++..
T Consensus 122 l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 122 LSEARQRLQEIRNQLQN 138 (240)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 66666666666555554
No 329
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=24.95 E-value=1.4e+02 Score=32.78 Aligned_cols=39 Identities=26% Similarity=0.288 Sum_probs=35.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 856 ESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQC 894 (964)
Q Consensus 856 qA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~ 894 (964)
+..||+++-++.+|.+=|....++||++++.+-+|+...
T Consensus 25 ~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~~~ 63 (214)
T PF07795_consen 25 NEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLLEK 63 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456999999999999999999999999999999999543
No 330
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=24.94 E-value=6.7e+02 Score=28.06 Aligned_cols=86 Identities=15% Similarity=0.227 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHH
Q 002118 863 EGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDL 942 (964)
Q Consensus 863 EGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEELraDL~DV 942 (964)
--|+..+-|+-..|+--|-+|--=|..-|.-+++++.--+.+-.++..++....=.+-++.|-|-|-|+-=+|+--+..|
T Consensus 39 ~~ei~a~~~ee~~leey~~em~~lL~ekm~Hveelr~iHadiN~men~ikq~k~~~~~~~~~~~r~~eey~~lk~h~d~l 118 (286)
T KOG4451|consen 39 RFEICAFTWEEENLEEYELEMGVLLLEKMGHVEELREIHADINEMENDIKQVKALEQHITSCNGRKGEEYMELKSHADEL 118 (286)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 35888888998889888887776666666667777766555555555554444444557889999988888888888888
Q ss_pred HHHHHH
Q 002118 943 KEMYRE 948 (964)
Q Consensus 943 KeMYR~ 948 (964)
..||-.
T Consensus 119 R~~~lg 124 (286)
T KOG4451|consen 119 RQINLG 124 (286)
T ss_pred HHHhcC
Confidence 877743
No 331
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=24.56 E-value=1.3e+02 Score=25.97 Aligned_cols=16 Identities=38% Similarity=0.733 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHH
Q 002118 905 PGIQAELDALRRRHSA 920 (964)
Q Consensus 905 ~~Le~el~eLqqRY~T 920 (964)
+.++.++++|.+||++
T Consensus 22 ~~ME~Eieelr~RY~~ 37 (49)
T PF11629_consen 22 PEMEQEIEELRQRYQA 37 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6788999999999987
No 332
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=24.55 E-value=1.6e+03 Score=29.06 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002118 407 QRVATLERKVYALTKER 423 (964)
Q Consensus 407 qRI~ALErKlQ~L~KEr 423 (964)
.||.++|..|-.+.+|.
T Consensus 70 ~ritt~e~rflnaqre~ 86 (916)
T KOG0249|consen 70 ERITTLEKRFLNAQRES 86 (916)
T ss_pred cccchHHHHHHhccCCC
Confidence 68888888887665554
No 333
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.44 E-value=8.8e+02 Score=25.84 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHH
Q 002118 856 ESILRQKEGELASYMSRLASMESIRDSLAEELVKMTA---QCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEEL 932 (964)
Q Consensus 856 qA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~---e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeV 932 (964)
+...+.+...+..|+.++..+......+..+|-.+.. ..++=.....++..|+.++..|+.-|...-..=.++.+..
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~ 140 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKL 140 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 002118 933 EELRADIMDLKEMYREQVNLLV 954 (964)
Q Consensus 933 EELraDL~DVKeMYR~QID~LL 954 (964)
.+--....+-=+.|=.-|..|.
T Consensus 141 ~~~~~~~~~~anrwTDNI~~l~ 162 (188)
T PF03962_consen 141 KEEIKIAKEAANRWTDNIFSLK 162 (188)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH
No 334
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=24.44 E-value=3.2e+02 Score=33.50 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=43.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHH
Q 002118 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELD-ALRRRHS 919 (964)
Q Consensus 854 ~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~-eLqqRY~ 919 (964)
+|-+.|+|+-.-..-+...+..++..|.++.+++..+.-+++.+... ...|++.++ +|-.||.
T Consensus 436 rl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~---Tr~Lq~~iE~~ISk~y~ 499 (507)
T PF05600_consen 436 RLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVER---TRELQKQIEADISKRYK 499 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHcC
Confidence 35566777777777777777777888888888888887776666544 555555555 4666663
No 335
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=24.34 E-value=1.1e+02 Score=38.08 Aligned_cols=59 Identities=24% Similarity=0.365 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 002118 864 GELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELM 925 (964)
Q Consensus 864 GEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMl 925 (964)
++--.+|++|+||+.-|+.|.=.+.-||.+++.-.++ |.+|+-.+++-+...+++=|||
T Consensus 104 ~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEK---IrDLE~cie~kr~kLnatEEmL 162 (861)
T KOG1899|consen 104 PEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEK---IRDLETCIEEKRNKLNATEEML 162 (861)
T ss_pred CcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhh---HHHHHHHHHHHHhhhchHHHHH
No 336
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=24.29 E-value=5.6e+02 Score=32.08 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 717 YLAAKEEADTQEGRANQLEEEIKELRR 743 (964)
Q Consensus 717 ~~aakeE~~~le~r~~qLEeeL~elr~ 743 (964)
+..++.++..+++.+++.+..++++++
T Consensus 123 i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 123 IPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 334445666666667777776666644
No 337
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=24.28 E-value=1.7e+03 Score=29.27 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 585 QAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAAS 664 (964)
Q Consensus 585 ~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A 664 (964)
=.++.-+++-.|..+|++||+-.+-+.+=+--..-----||++- .++.+.....+.|+..|+. |+..+.++.+.+
T Consensus 667 i~~~q~eel~Ke~kElq~rL~~q~KkiDh~ERA~R~EeiPL~e~--~~~~~~~~d~e~~e~~Ek~---Ri~~~~ae~e~~ 741 (988)
T KOG2072|consen 667 IKARQIEELEKERKELQSRLQYQEKKIDHLERAKRLEEIPLIEK--AYDERQEEDRELYEAREKQ---RIEAAIAERESA 741 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHH--HHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHH
Confidence 33444567778889999999987666555444333334577763 4667777888999998875 577666665544
Q ss_pred HH
Q 002118 665 EE 666 (964)
Q Consensus 665 ~e 666 (964)
..
T Consensus 742 vk 743 (988)
T KOG2072|consen 742 VK 743 (988)
T ss_pred HH
Confidence 43
No 338
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=24.24 E-value=7e+02 Score=27.86 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=11.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHh
Q 002118 369 ADEIAKMMNENEHLKAVIEDLK 390 (964)
Q Consensus 369 ~~~~A~L~e~N~~L~~~~e~l~ 390 (964)
..+++++.+.|..|..+|..+.
T Consensus 12 ~~~~~~~~~L~~kLE~DL~~~~ 33 (248)
T PF08172_consen 12 EAKLEEQKELNAKLENDLAKVQ 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555556655555555
No 339
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=24.22 E-value=9.7e+02 Score=26.25 Aligned_cols=123 Identities=20% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002118 650 LNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEG 729 (964)
Q Consensus 650 L~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er~r~~~~r~e~~aakeE~~~le~ 729 (964)
|-+.|.+++..+..-.--=-.++-.++++...+...+.++..++.....-...|+.+.+.+.....+....+..+..++.
T Consensus 15 LKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~ 94 (202)
T PF06818_consen 15 LKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEA 94 (202)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHH
Q ss_pred HHHHHHHHHHHH---------------------H------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002118 730 RANQLEEEIKEL---------------------R------------RKHKQELQEALMHRELLQQEIEREKTARVD 772 (964)
Q Consensus 730 r~~qLEeeL~el---------------------r------------~k~~~elqea~~~~e~lqq~lE~Ek~~r~e 772 (964)
.+..|...+..+ . ..+..+|...+.........++.|+..|.+
T Consensus 95 El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~e 170 (202)
T PF06818_consen 95 ELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQE 170 (202)
T ss_pred HHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
No 340
>PRK04325 hypothetical protein; Provisional
Probab=24.14 E-value=5.6e+02 Score=23.47 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 554 LESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELV 615 (964)
Q Consensus 554 Le~~lkEaeEre~~L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELS 615 (964)
++.++.+++.+..-....|++|...+-+. ..+|..|+.+|+.+..|..++.
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Q-----------q~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQ-----------QQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555544555677777777543 2334444444444444444444
No 341
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=24.09 E-value=1.1e+03 Score=27.06 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=22.7
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 853 SAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLR 898 (964)
Q Consensus 853 S~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr 898 (964)
.-|.-.|.-.|-----.+-..+.|-..+..|--+|=.|.-.++++.
T Consensus 80 r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~e 125 (302)
T PF09738_consen 80 RDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELE 125 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555544444455555555555555555444444444444
No 342
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=24.05 E-value=9e+02 Score=26.36 Aligned_cols=46 Identities=26% Similarity=0.273 Sum_probs=32.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHhHHHHHHH
Q 002118 339 DSVCELEKLKREMKMMETALQGAARQAQA----KADEIAKMMNENEHLKA 384 (964)
Q Consensus 339 ~~~~e~ekl~~~~~~~~~~l~~~~r~~~~----k~~~~A~L~e~N~~L~~ 384 (964)
|.--|.-.|++++..|+.-|..+.+.... -....+-+..+.++|..
T Consensus 93 ~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~ 142 (195)
T PF12761_consen 93 GTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLD 142 (195)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHH
Confidence 55568889999999999999988666554 11233444666677654
No 343
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.89 E-value=5.8e+02 Score=31.18 Aligned_cols=80 Identities=24% Similarity=0.346 Sum_probs=40.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh-ccchhHHHHH
Q 002118 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELM-GERDEELEEL 935 (964)
Q Consensus 857 A~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMl-GEKsEeVEEL 935 (964)
-+||-+-|++.+++.++. .|..+|+.|+.+ ...|+++..++++|-+.+|+=. .+-..+.+.|
T Consensus 59 DTlrTlva~~k~~r~~~~--------------~l~~~N~~l~~e---N~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql 121 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLA--------------KLISENEALKAE---NERLQKREQSIDQQIQQAVQSETQELTKEIEQL 121 (472)
T ss_pred chHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH---HHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHH
Confidence 445555555554444444 444555555544 3344555566777777776542 1222234444
Q ss_pred HHhHHHHHHHHHHHHHHHHhhc
Q 002118 936 RADIMDLKEMYREQVNLLVNKV 957 (964)
Q Consensus 936 raDL~DVKeMYR~QID~LLkQi 957 (964)
+.+++.+ +.+|+.|..|+
T Consensus 122 ~~~~~~~----~~~l~~l~~~l 139 (472)
T TIGR03752 122 KSERQQL----QGLIDQLQRRL 139 (472)
T ss_pred HHHHHHH----HHHHHHHHHHH
Confidence 4454444 44455555444
No 344
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=23.81 E-value=9.4e+02 Score=25.93 Aligned_cols=111 Identities=20% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCccchH----------HHHHHHHHHHHHHHHHHHHHH
Q 002118 580 SRTEQQAVFREDMLRR---DIEDLQRRYQASERRCEELVTQVPESTRPL----------LRQIEAIQETTARRAEAWAAV 646 (964)
Q Consensus 580 eRaeq~a~~rEeeLR~---Eis~Le~RLEeaEsRaEELSssv~eATrPL----------LRQIEtLQaQ~asqsenWe~i 646 (964)
+++-+.++.-|--|-| =+..|++.+.+++.-.++...++..+..-+ ..|+++|+..+.....|-..+
T Consensus 49 ~kA~qaA~aAeAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a 128 (188)
T PF05335_consen 49 DKAAQAAKAAEAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANA 128 (188)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 647 ERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTK 701 (964)
Q Consensus 647 E~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~ 701 (964)
+.....=-.++..+ +.-+..++.|+..|..+|...|..+...+.
T Consensus 129 ~~~a~~AQ~el~eK-----------~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 129 EQVAEGAQQELAEK-----------TQLLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 345
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.78 E-value=8.9e+02 Score=31.41 Aligned_cols=77 Identities=18% Similarity=0.082 Sum_probs=62.9
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 002118 853 SAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTA--------QCEKLRAEAAILPGIQAELDALRRRHSAALEL 924 (964)
Q Consensus 853 S~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~--------e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEM 924 (964)
+-+.-.|++.--|-++++.++..++-+||.++++..-+-. +.+.|.++......-+.+..--..||+|+|-=
T Consensus 298 E~~~~~v~~~t~E~tQ~~~~ve~~~~e~~~A~~~~T~~~~~vk~~~G~~~~~LsA~~E~~~~~r~~~~~~~~~~~aLv~~ 377 (1104)
T COG4913 298 EEQETLVRQFTVEQTQAKSKVESAKIETDRAREMETLAHDNVKQIVGAQHGILSAKREGAVDKRRTISTARAGLDALVKG 377 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 3456778999999999999999999999998877655432 56677777777777788888889999999999
Q ss_pred hccch
Q 002118 925 MGERD 929 (964)
Q Consensus 925 lGEKs 929 (964)
+|+-.
T Consensus 378 l~~aA 382 (1104)
T COG4913 378 LGGAA 382 (1104)
T ss_pred ccCCC
Confidence 99764
No 346
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=23.73 E-value=4.8e+02 Score=26.11 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHHH--HHHHHhccch
Q 002118 904 LPGIQAELDALRRRHS--AALELMGERD 929 (964)
Q Consensus 904 v~~Le~el~eLqqRY~--TlLEMlGEKs 929 (964)
+..+..++..+..+|+ +++..|..-.
T Consensus 78 ~~~k~~~~~~l~~~~s~~~l~~~L~~~~ 105 (150)
T PF07200_consen 78 YQEKEQQQDELSSNYSPDALLARLQAAA 105 (150)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 4444444555544442 3444444433
No 347
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=23.65 E-value=7.7e+02 Score=24.86 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=7.0
Q ss_pred HhhhHHHHHHHHHHHH
Q 002118 521 LGEQKDYYTNALAAAK 536 (964)
Q Consensus 521 L~aqk~~~~~~L~aAk 536 (964)
+...+..|...+..|+
T Consensus 57 a~~~~~e~e~~l~~Ar 72 (141)
T PRK08476 57 VSEIEHEIETILKNAR 72 (141)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 348
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=23.40 E-value=4.8e+02 Score=23.39 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 405 YHQRVATLERKVYALTKERDTLRR 428 (964)
Q Consensus 405 y~qRI~ALErKlQ~L~KErD~Lrk 428 (964)
+-.|..+|+.++..|.++.+.+|.
T Consensus 37 aE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 37 AEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 335666666666666666666553
No 349
>smart00150 SPEC Spectrin repeats.
Probab=23.32 E-value=4e+02 Score=23.29 Aligned_cols=69 Identities=22% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHhccchhHHH
Q 002118 865 ELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAE-AAILPGIQAELDALRRRHSAALELMGERDEELE 933 (964)
Q Consensus 865 Ela~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~-~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVE 933 (964)
.+..+..+...|...=......|-.+....+.|... -...+.+...+.+|+.||+.+..++-++...++
T Consensus 32 ~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~ 101 (101)
T smart00150 32 SVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEELNERWEELKELAEERRQKLE 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 350
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=23.01 E-value=8.1e+02 Score=24.89 Aligned_cols=60 Identities=12% Similarity=0.354 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 625 LLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISC 691 (964)
Q Consensus 625 LLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~ 691 (964)
+=.|++.+-+.++. .=+-|.+||..+-.++++..+--..++++...+...+..+..++..
T Consensus 48 v~kql~~vs~~l~~-------tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~ 107 (126)
T PF07889_consen 48 VSKQLEQVSESLSS-------TKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDS 107 (126)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33455555555544 4467888999888888876666555555544444444444444433
No 351
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.93 E-value=8.4e+02 Score=25.97 Aligned_cols=71 Identities=30% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHhHHHH----HHHHHHHHHHHHHHHhhhHHHHH
Q 002118 459 KKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTAT----EKLLQETIEKHQVELGEQKDYYT 529 (964)
Q Consensus 459 KkELq~sniIKKLRakikE~Eee~~~Lk~Kle~e~~k~es~kr~~~a~----EK~lqe~iek~q~eL~aqk~~~~ 529 (964)
++.++.......|..+|.+++.++..|..++.....+.+.+.+..... +|..++.+..++.....++..+.
T Consensus 113 rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 113 RKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 352
>PRK00295 hypothetical protein; Provisional
Probab=22.89 E-value=5.7e+02 Score=23.07 Aligned_cols=50 Identities=30% Similarity=0.389 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002118 556 SRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVT 616 (964)
Q Consensus 556 ~~lkEaeEre~~L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSs 616 (964)
.++.+++.+..-+...|++|...+-+. ..+|..|+..|+.+..|..++.+
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Q-----------q~~I~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQ-----------QRVIERLQLQMAALIKRQEEMVG 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555444445677777777443 23334444444444444444443
No 353
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=22.75 E-value=5.1e+02 Score=23.54 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 002118 403 EEYHQRVATLERKVYA 418 (964)
Q Consensus 403 eEy~qRI~ALErKlQ~ 418 (964)
.-..++++.+=.|+..
T Consensus 38 ~~L~ekne~Ar~rvEa 53 (65)
T TIGR02449 38 AQLLEKNEQARQKVEA 53 (65)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 354
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.31 E-value=6.4e+02 Score=23.46 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=52.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 002118 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALE 923 (964)
Q Consensus 854 ~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLE 923 (964)
.|.+-+++--.=|+-||-++..|.-.-..|..|+..+....+.|+.+ ...|+.+...-+.|..++|-
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~e---neqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERE---NEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 56666777666778888888888888888888888888877877755 56777888888888888774
No 355
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=22.28 E-value=5.4e+02 Score=30.03 Aligned_cols=60 Identities=18% Similarity=0.348 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 002118 571 ALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAE 641 (964)
Q Consensus 571 qIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqse 641 (964)
.|.+|=..|-|..+.-..-+.+|+.|...++.|+..++.+++=+. +--+.||-||....+
T Consensus 9 ri~~li~~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~-----------~~~~~~~~qyrecqe 68 (328)
T PF15369_consen 9 RIANLIKELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELII-----------KEREDLQQQYRECQE 68 (328)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----------HHHHHHHHHHHHHHH
Confidence 456666667777777777799999999999999999999887544 467888888887654
No 356
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=22.25 E-value=1.5e+03 Score=27.71 Aligned_cols=58 Identities=19% Similarity=0.281 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 596 DIEDLQRRYQASERRCEELVT-QVPESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEE 666 (964)
Q Consensus 596 Eis~Le~RLEeaEsRaEELSs-sv~eATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~e 666 (964)
|+..|.-.|+.||-+.+-=|+ ++|.+-+|+|+----+.-|| ++.+-.++++++..|.+
T Consensus 310 elE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~-------------~~kkrqnaekql~~Ake 368 (575)
T KOG4403|consen 310 ELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQY-------------YNKKRQNAEKQLKEAKE 368 (575)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH-------------HHHHhhhHHHHHHHHHH
Confidence 555555555666666655543 37777777765433333332 34455666666654433
No 357
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=22.22 E-value=8.4e+02 Score=24.82 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=7.2
Q ss_pred HhhhHHHHHHHHHHHH
Q 002118 521 LGEQKDYYTNALAAAK 536 (964)
Q Consensus 521 L~aqk~~~~~~L~aAk 536 (964)
.......|...|..|+
T Consensus 72 a~~~~~e~e~~L~~A~ 87 (156)
T CHL00118 72 ANELTKQYEQELSKAR 87 (156)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444555554443
No 358
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=21.86 E-value=5.2e+02 Score=24.58 Aligned_cols=58 Identities=21% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 002118 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAEL 911 (964)
Q Consensus 854 ~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el 911 (964)
.|..-+-+++.|++....+.-.+.+..|.+..|+..|...+..-..-+..+.+++..+
T Consensus 28 ~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~ 85 (96)
T PF08647_consen 28 ILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEKEF 85 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
No 359
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=21.55 E-value=6.4e+02 Score=23.22 Aligned_cols=41 Identities=34% Similarity=0.491 Sum_probs=20.9
Q ss_pred HHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 439 LLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLV 486 (964)
Q Consensus 439 ~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~Lk 486 (964)
+...+++.+..|-+.-+.|.+. |++|+.+++.+++.+..++
T Consensus 56 v~~~~~~~~~~L~~~~~~~~~~-------i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 56 VKQDKEEAIEELEERIEKLEKE-------IKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4456667776666555555544 4444444444444443333
No 360
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=21.41 E-value=4.5e+02 Score=24.76 Aligned_cols=51 Identities=25% Similarity=0.320 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhc
Q 002118 341 VCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKR 391 (964)
Q Consensus 341 ~~e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~ 391 (964)
..+=+.|.++|..|...|++---....--.+..+|..+|+-|+.=|..|-.
T Consensus 15 ~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 15 KEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568888888888888865333333344555566666666555555543
No 361
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=21.39 E-value=8.4e+02 Score=24.48 Aligned_cols=38 Identities=32% Similarity=0.377 Sum_probs=32.1
Q ss_pred hHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 002118 434 SDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKL 471 (964)
Q Consensus 434 s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKL 471 (964)
..+..+|+||--...-|..|=+-|-|-+..+..+|-+|
T Consensus 83 q~lq~~I~Ek~~eLERl~~E~~sL~kve~eQ~~~i~~~ 120 (120)
T PF14931_consen 83 QQLQALIAEKKMELERLRSEYESLQKVEQEQNELIQKL 120 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34567999999999999999999999999988888654
No 362
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=21.35 E-value=1e+03 Score=25.56 Aligned_cols=84 Identities=13% Similarity=0.213 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 343 ELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKE 422 (964)
Q Consensus 343 e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KE 422 (964)
=|--|..-|.-||...-.|+..+..++.+.+.-...- ..+...- .....++..=..+|+-.|+++|.+-..|-|+
T Consensus 5 ALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl---~~~~~~~--~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQ 79 (178)
T PF14073_consen 5 ALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVL---QSEQNER--ERAHQELSKQNQDLSSQLSAAETRCSLLEKQ 79 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHH---HHHhhhh--hcccchhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888888888888777777777776533222 2111111 1112233333678889999999999888888
Q ss_pred HHHHHHHHh
Q 002118 423 RDTLRREQN 431 (964)
Q Consensus 423 rD~Lrke~a 431 (964)
.+-+|+=+.
T Consensus 80 LeyMRkmv~ 88 (178)
T PF14073_consen 80 LEYMRKMVE 88 (178)
T ss_pred HHHHHHHHH
Confidence 888776443
No 363
>PRK02119 hypothetical protein; Provisional
Probab=21.24 E-value=3.7e+02 Score=24.57 Aligned_cols=11 Identities=0% Similarity=0.229 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 002118 409 VATLERKVYAL 419 (964)
Q Consensus 409 I~ALErKlQ~L 419 (964)
|+.|++.+..|
T Consensus 39 id~L~~ql~~L 49 (73)
T PRK02119 39 IDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 364
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.23 E-value=6.1e+02 Score=26.74 Aligned_cols=57 Identities=26% Similarity=0.477 Sum_probs=37.7
Q ss_pred HHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHH
Q 002118 437 AALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVE 497 (964)
Q Consensus 437 ~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~Lk~Kle~e~~k~e 497 (964)
...|-++|..+..++++ -.........|..||+.+..++..++.+-.+|......+.
T Consensus 4 ~~~L~~~d~~L~~~L~~----l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~ 60 (188)
T PF10018_consen 4 AEDLIEADDELSSALEE----LQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELR 60 (188)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777776654 3456666777888888888888777777665554444433
No 365
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=21.14 E-value=8.8e+02 Score=24.61 Aligned_cols=65 Identities=23% Similarity=0.398 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 002118 340 SVCELEKLKREMKMMETALQGA----ARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQ 407 (964)
Q Consensus 340 ~~~e~ekl~~~~~~~~~~l~~~----~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~q 407 (964)
-+.++.-|-.++..|++-=..+ .++.......++++.+..+++...+..+... +++.-.+++|-+
T Consensus 25 v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~---~~~r~yk~eYk~ 93 (126)
T PF09403_consen 25 VESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQD---SKVRWYKDEYKE 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---GGGSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh---cchhHHHHHHHH
Confidence 3446666666666665544433 2344444555566655555555555554442 334445555544
No 366
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.10 E-value=2.9e+02 Score=30.03 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhH
Q 002118 889 KMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEE 931 (964)
Q Consensus 889 ~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEe 931 (964)
.|..........+..++.|++++.+++.||+.+|-=|--+.|-
T Consensus 60 ~LKs~~q~K~~~aanL~~lr~Ql~emee~~~~llrQLPs~tEm 102 (211)
T COG3167 60 ELKSTYQQKAIQAANLEALRAQLAEMEERFDILLRQLPSDTEM 102 (211)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhCCcccch
Confidence 3444444566667788999999999999999999887777653
No 367
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=21.06 E-value=2.1e+03 Score=29.08 Aligned_cols=49 Identities=24% Similarity=0.173 Sum_probs=30.0
Q ss_pred HHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 438 ALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLV 486 (964)
Q Consensus 438 a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~Lk 486 (964)
.+..=+++.|..|..|=.-++-+.-..++.+.|.|..+.+.......++
T Consensus 629 ~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~ 677 (1072)
T KOG0979|consen 629 ELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLK 677 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566667777777777777766666767666665555444444443
No 368
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.99 E-value=7.2e+02 Score=23.55 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=55.4
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 002118 853 SAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELM 925 (964)
Q Consensus 853 S~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMl 925 (964)
+.|.+-|.+---.|+-||-+|..|...-..|..|+-.+....++|..+ ...|+.+...-+.|..++|--+
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~e---n~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERE---NNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhh
Confidence 466677777777888889999988888888888888877777777655 6778888888899998887544
No 369
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=20.95 E-value=1.1e+03 Score=28.74 Aligned_cols=92 Identities=15% Similarity=0.165 Sum_probs=74.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q 002118 862 KEGELASYMSRLASMESIRDSLAEELVKMTAQC------EKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEEL 935 (964)
Q Consensus 862 rEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~------Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEEL 935 (964)
+.--+...+.++.+.+.....++..|..+-++. ........-+..|+.++.+++.+..+++.-+.+.+=+|--|
T Consensus 240 r~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l 319 (434)
T PRK15178 240 QKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRL 319 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHH
Confidence 444677788888888888888888888887754 34455567799999999999999999999899999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHhhc
Q 002118 936 RADIMDLKEMYREQVNLLVNKV 957 (964)
Q Consensus 936 raDL~DVKeMYR~QID~LLkQi 957 (964)
+..|.-| +.||+..-.++
T Consensus 320 ~~rI~aL----e~QIa~er~kl 337 (434)
T PRK15178 320 SAKIKVL----EKQIGEQRNRL 337 (434)
T ss_pred HHHHHHH----HHHHHHHHHHh
Confidence 9999887 66776554444
No 370
>PRK00295 hypothetical protein; Provisional
Probab=20.79 E-value=5.7e+02 Score=23.03 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002118 650 LNLRLQEAEAKAAASEE 666 (964)
Q Consensus 650 L~~RLaeaE~~l~~A~e 666 (964)
+..||.++|.+++-...
T Consensus 3 ~e~Ri~~LE~kla~qE~ 19 (68)
T PRK00295 3 LEERVTELESRQAFQDD 19 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55677777776654433
No 371
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.72 E-value=1.2e+03 Score=29.95 Aligned_cols=92 Identities=24% Similarity=0.276 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 002118 860 RQKEGELASYMSRLASMESIRDS--------------LAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELM 925 (964)
Q Consensus 860 RqrEGEla~LQ~ELarLe~qRde--------------L~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMl 925 (964)
.++.-+++..+.+|+.|++...+ |.+++.++...++.++.. ...=.+++.+|..--+-+++-+
T Consensus 64 ~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~q---k~eR~~ef~el~~qie~l~~~l 140 (660)
T KOG4302|consen 64 ARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQ---KDERRAEFKELYHQIEKLCEEL 140 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Q ss_pred ccc---------------hhHHHHHHHhHHHHHHHHHHHHHHHH
Q 002118 926 GER---------------DEELEELRADIMDLKEMYREQVNLLV 954 (964)
Q Consensus 926 GEK---------------sEeVEELraDL~DVKeMYR~QID~LL 954 (964)
|+. -+.+++|+..|..+.+-|..=+...+
T Consensus 141 ~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~ 184 (660)
T KOG4302|consen 141 GGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVL 184 (660)
T ss_pred cCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
No 372
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=20.70 E-value=1.4e+03 Score=26.75 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002118 639 RAEAWAAVERSLNLRLQEAEAK 660 (964)
Q Consensus 639 qsenWe~iE~sL~~RLaeaE~~ 660 (964)
....|.-.|.-.+-||++-...
T Consensus 123 ~~~dW~LaEaeyLlrlA~qrL~ 144 (372)
T PF04375_consen 123 SRDDWLLAEAEYLLRLANQRLQ 144 (372)
T ss_pred ChHhHHHHHHHHHHHHHHHHHH
Confidence 7788988888888888764443
No 373
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=20.67 E-value=3.1e+02 Score=28.05 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 002118 879 IRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALE 923 (964)
Q Consensus 879 qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLE 923 (964)
+|.+|..+=+.|-++++.|+.+ +..+..++..+..+|+++..
T Consensus 75 Qk~eLE~~k~~L~qqv~~L~~e---~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 75 QKHELEKEKAELQQQVEKLKEE---NSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 5677777777777788877766 55667778888888887654
No 374
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=20.65 E-value=2.6e+02 Score=24.32 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=28.0
Q ss_pred HHHHHHHHHHH----HHHHHHHhHHHHHHHHhHHHHHHHHHHHHhc
Q 002118 350 EMKMMETALQG----AARQAQAKADEIAKMMNENEHLKAVIEDLKR 391 (964)
Q Consensus 350 ~~~~~~~~l~~----~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~ 391 (964)
+|.+|+..+-+ +-.--..-...|++|..+|..|+++++.++.
T Consensus 5 Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 5 RLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555554443 3212234567899999999999999987654
No 375
>PRK10722 hypothetical protein; Provisional
Probab=20.50 E-value=3e+02 Score=30.81 Aligned_cols=57 Identities=33% Similarity=0.416 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 568 LVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAVE 647 (964)
Q Consensus 568 L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~iE 647 (964)
|+.++.+-|..+.|..+....+=+.||..+.+|+.+|.....+.|-|+. ||
T Consensus 156 l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTd-----------------------------IE 206 (247)
T PRK10722 156 LQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTD-----------------------------IE 206 (247)
T ss_pred HHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HH
Q ss_pred HHHHHH
Q 002118 648 RSLNLR 653 (964)
Q Consensus 648 ~sL~~R 653 (964)
++|..|
T Consensus 207 RqLSsR 212 (247)
T PRK10722 207 RQLSSR 212 (247)
T ss_pred HHhccC
No 376
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=20.48 E-value=55 Score=34.36 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 866 LASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEA 901 (964)
Q Consensus 866 la~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~ 901 (964)
+..++..|..|+..|..++.+|.+|..+|+.|+.+.
T Consensus 10 ~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el 45 (181)
T PF09311_consen 10 MRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGEL 45 (181)
T ss_dssp HHHHHHHHHHHHHCCHHHHT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888888888888887664
No 377
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=20.44 E-value=9.1e+02 Score=24.51 Aligned_cols=83 Identities=18% Similarity=0.202 Sum_probs=52.4
Q ss_pred hHHHHHHHhhhhHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHHHHH
Q 002118 853 SAFESILRQKEGELASYMS-RLASME---SIRDSLAEELVKMTAQCEKLRAEAAILPGI------QAELDALRRRHSAAL 922 (964)
Q Consensus 853 S~LqA~LRqrEGEla~LQ~-ELarLe---~qRdeL~eELV~Lt~e~Eelr~~~~~v~~L------e~el~eLqqRY~TlL 922 (964)
..+-+.+..+|.|...|.. |-+|.. +.-+.+..+|..+..-.....+...+++.. +.++..|=.+|++++
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~ 102 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLL 102 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 3456667777777766633 444443 555667777777777555555555554444 678889999999887
Q ss_pred HHhccchhHHHHH
Q 002118 923 ELMGERDEELEEL 935 (964)
Q Consensus 923 EMlGEKsEeVEEL 935 (964)
-=|-......++-
T Consensus 103 ~~L~k~I~~~e~i 115 (126)
T PF09403_consen 103 NKLDKEIAEQEQI 115 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6555554444443
No 378
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.43 E-value=8.3e+02 Score=25.54 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 002118 466 AQIRKLRAQIRELEEEKKGLVT 487 (964)
Q Consensus 466 niIKKLRakikE~Eee~~~Lk~ 487 (964)
.-|++|+.+++..+.++..|+.
T Consensus 161 ~ei~~lk~el~~~~~~~~~Lkk 182 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIEALKK 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455444444444444443
No 379
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.31 E-value=8.5e+02 Score=24.14 Aligned_cols=43 Identities=33% Similarity=0.392 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 443 KDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGL 485 (964)
Q Consensus 443 KDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~L 485 (964)
.++-|.-|-.--+.|.+..-.....|.+++.++......+..+
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444555555544444444443
No 380
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=20.28 E-value=9.5e+02 Score=29.71 Aligned_cols=94 Identities=13% Similarity=0.252 Sum_probs=64.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccc----h---
Q 002118 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGER----D--- 929 (964)
Q Consensus 857 A~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEK----s--- 929 (964)
--+.-+.--+.....+|-+|++.|++|...|+.||.-....+.+ +.+-+. +|-.-|--+|-=+-|| -
T Consensus 604 ~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKA---VhdaK~---ElA~~Y~klLagiKEKwv~KKe~t 677 (790)
T PF07794_consen 604 MEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKA---VHDAKV---ELAAAYSKLLAGIKEKWVAKKEYT 677 (790)
T ss_pred hhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHH---HHHHHHHHHHHHHHHHHhhhhhHH
Confidence 33444455566777899999999999999999999877666543 333333 3444566665544443 1
Q ss_pred ---hHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 002118 930 ---EELEELRADIMDLKEMYREQVNLLVNK 956 (964)
Q Consensus 930 ---EeVEELraDL~DVKeMYR~QID~LLkQ 956 (964)
=...|++..+.=++.|.+.-||.++..
T Consensus 678 ~le~qAaEvesNlaLidqi~kaaIdltvEk 707 (790)
T PF07794_consen 678 VLEGQAAEVESNLALIDQITKAAIDLTVEK 707 (790)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 135688888888899999998877654
No 381
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=20.28 E-value=1.5e+03 Score=26.93 Aligned_cols=67 Identities=22% Similarity=0.265 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CCC--ccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 595 RDIEDLQRRYQASERRCEELVTQ--VPE--STRPL-LRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKA 661 (964)
Q Consensus 595 ~Eis~Le~RLEeaEsRaEELSss--v~e--ATrPL-LRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l 661 (964)
..+.+|..+++.+|...+.-... ..+ -...+ .++.-.+.+++...+..=...++.|.........-.
T Consensus 202 ~~l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~~~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~ 273 (458)
T COG3206 202 ERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARLAQAEARLASLLQLLPLGR 273 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 33344444444444444443332 222 22233 356666777777666666666666665555444433
No 382
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=20.14 E-value=2e+03 Score=28.29 Aligned_cols=11 Identities=9% Similarity=0.250 Sum_probs=4.3
Q ss_pred HhhHHHHHHHH
Q 002118 440 LKEKDEIINQV 450 (964)
Q Consensus 440 LkEKDEqIaqL 450 (964)
+.+-+..|..|
T Consensus 224 ~~~ln~~l~~l 234 (771)
T TIGR01069 224 IVKLNNKLAQL 234 (771)
T ss_pred HHHHHHHHHHH
Confidence 33334444433
No 383
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=20.06 E-value=1e+03 Score=28.16 Aligned_cols=58 Identities=21% Similarity=0.332 Sum_probs=42.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhH--HHHHHHhHHHHHHHHHHHHHHHH
Q 002118 897 LRAEAAILPGIQAELDALRRRHSAALELMGERDEE--LEELRADIMDLKEMYREQVNLLV 954 (964)
Q Consensus 897 lr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEe--VEELraDL~DVKeMYR~QID~LL 954 (964)
+.....++..|...+..+..+|..++..|||-.-. .++.=..+.+.-..|+.-..+-+
T Consensus 319 ~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~ 378 (432)
T smart00498 319 LKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENI 378 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556779999999999999999999999997663 35554556666666665554433
No 384
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=20.01 E-value=3.3e+02 Score=26.77 Aligned_cols=48 Identities=25% Similarity=0.314 Sum_probs=26.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002118 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAIL 904 (964)
Q Consensus 857 A~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v 904 (964)
..|.+++..+..+-.+|..|...=..|-+|=++|..+|+.|+..+...
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544555556666666666666554443
Done!