Query 002118
Match_columns 964
No_of_seqs 133 out of 147
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 13:05:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002118.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002118hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.0 0.02 6.7E-07 57.5 44.5 43 344-386 1-43 (284)
2 1c1g_A Tropomyosin; contractIl 98.0 0.02 6.8E-07 57.4 45.4 7 414-420 6-12 (284)
3 1i84_S Smooth muscle myosin he 97.7 6.5E-05 2.2E-09 94.7 10.6 23 339-361 854-876 (1184)
4 1i84_S Smooth muscle myosin he 97.6 9.9E-05 3.4E-09 93.1 10.3 20 467-486 879-898 (1184)
5 3na7_A HP0958; flagellar bioge 96.7 0.62 2.1E-05 49.2 25.9 79 554-635 109-187 (256)
6 3o0z_A RHO-associated protein 96.3 0.32 1.1E-05 49.1 19.1 140 563-706 6-155 (168)
7 3na7_A HP0958; flagellar bioge 95.9 1.8 6E-05 45.8 23.7 130 342-476 11-142 (256)
8 2v71_A Nuclear distribution pr 95.7 2.3 7.7E-05 43.8 24.4 107 567-677 21-134 (189)
9 2efr_A General control protein 95.6 2.2 7.5E-05 42.6 22.4 57 578-638 60-116 (155)
10 2efr_A General control protein 95.5 2.4 8.1E-05 42.3 25.6 36 600-646 26-61 (155)
11 3vkg_A Dynein heavy chain, cyt 94.5 15 0.00052 51.3 31.6 90 650-746 2012-2101(3245)
12 3o0z_A RHO-associated protein 94.2 5.3 0.00018 40.3 22.4 110 620-747 6-115 (168)
13 3tnu_B Keratin, type II cytosk 93.9 0.86 2.9E-05 43.6 13.3 103 639-751 2-104 (129)
14 3tnu_A Keratin, type I cytoske 93.5 0.84 2.9E-05 43.9 12.5 104 638-751 3-106 (131)
15 2dfs_A Myosin-5A; myosin-V, in 93.1 2 6.7E-05 54.3 18.4 22 595-616 928-949 (1080)
16 2dfs_A Myosin-5A; myosin-V, in 93.1 3.3 0.00011 52.3 20.3 12 338-349 753-764 (1080)
17 3vkg_A Dynein heavy chain, cyt 91.7 48 0.0016 46.6 29.9 25 926-950 2381-2405(3245)
18 3mq7_A Bone marrow stromal ant 88.3 4.6 0.00016 38.5 11.4 81 856-943 24-105 (121)
19 3mq7_A Bone marrow stromal ant 88.3 9.8 0.00033 36.4 13.6 49 568-616 51-99 (121)
20 3ol1_A Vimentin; structural ge 85.1 18 0.00062 34.2 13.9 102 854-958 17-118 (119)
21 3oja_B Anopheles plasmodium-re 84.7 5.3 0.00018 46.0 12.1 21 567-587 453-473 (597)
22 3bas_A Myosin heavy chain, str 83.5 5.7 0.00019 35.9 9.3 59 854-922 11-69 (89)
23 3ghg_A Fibrinogen alpha chain; 82.0 16 0.00056 42.6 14.3 43 573-615 49-91 (562)
24 2b9c_A Striated-muscle alpha t 81.8 42 0.0014 33.0 16.2 92 650-741 22-113 (147)
25 3mq9_A Bone marrow stromal ant 80.6 36 0.0012 38.2 16.6 39 669-707 400-438 (471)
26 3u1c_A Tropomyosin alpha-1 cha 80.5 36 0.0012 31.4 15.8 57 651-707 8-64 (101)
27 3oja_B Anopheles plasmodium-re 80.2 32 0.0011 39.4 16.4 17 592-608 453-469 (597)
28 3ol1_A Vimentin; structural ge 79.7 41 0.0014 31.8 14.1 22 727-748 88-109 (119)
29 2v66_B Nuclear distribution pr 79.5 43 0.0015 31.7 16.1 32 568-600 75-106 (111)
30 3ghg_A Fibrinogen alpha chain; 78.0 52 0.0018 38.5 16.6 68 568-639 62-129 (562)
31 3trt_A Vimentin; cytoskeleton, 77.7 28 0.00095 30.1 11.4 66 625-690 7-73 (77)
32 2v66_B Nuclear distribution pr 77.3 50 0.0017 31.3 16.8 29 557-585 4-32 (111)
33 1ic2_A Tropomyosin alpha chain 76.9 37 0.0013 29.9 12.1 56 650-705 4-59 (81)
34 2fxo_A Myosin heavy chain, car 75.9 56 0.0019 31.1 17.0 22 340-361 11-32 (129)
35 3u59_A Tropomyosin beta chain; 75.7 48 0.0017 30.3 15.6 56 652-707 9-64 (101)
36 2ocy_A RAB guanine nucleotide 75.5 21 0.00073 35.6 11.2 89 858-946 52-145 (154)
37 2v71_A Nuclear distribution pr 75.1 79 0.0027 32.5 23.6 49 553-601 53-101 (189)
38 1ic2_A Tropomyosin alpha chain 74.0 13 0.00044 32.9 8.3 72 345-418 2-73 (81)
39 2oto_A M protein; helical coil 73.5 71 0.0024 31.2 16.9 10 438-447 96-105 (155)
40 3tnu_A Keratin, type I cytoske 73.1 14 0.00049 35.3 9.1 48 904-951 61-112 (131)
41 3u59_A Tropomyosin beta chain; 72.3 59 0.002 29.7 13.6 76 344-421 4-79 (101)
42 2jee_A YIIU; FTSZ, septum, coi 72.0 25 0.00086 31.6 9.6 62 549-610 6-77 (81)
43 3q8t_A Beclin-1; autophagy, AT 70.4 65 0.0022 29.5 13.5 80 343-431 5-84 (96)
44 3tnu_B Keratin, type II cytosk 69.9 26 0.00091 33.3 10.1 48 904-951 59-110 (129)
45 3u1c_A Tropomyosin alpha-1 cha 69.4 70 0.0024 29.4 14.4 49 344-392 4-52 (101)
46 2lw1_A ABC transporter ATP-bin 67.9 12 0.00041 33.5 6.9 55 594-648 21-84 (89)
47 3ni0_A Bone marrow stromal ant 65.7 77 0.0026 29.3 11.5 45 568-612 44-91 (99)
48 3mq9_A Bone marrow stromal ant 64.4 1.5E+02 0.005 33.1 16.5 46 570-615 425-470 (471)
49 2ocy_A RAB guanine nucleotide 63.2 1.3E+02 0.0043 30.1 16.4 40 654-693 103-142 (154)
50 2e7s_A RAB guanine nucleotide 62.3 9.8 0.00034 37.2 5.5 89 858-946 40-133 (135)
51 3a7p_A Autophagy protein 16; c 61.4 1.2E+02 0.004 30.3 12.9 66 625-701 66-131 (152)
52 3a7p_A Autophagy protein 16; c 61.1 1.1E+02 0.0036 30.6 12.5 65 681-745 69-133 (152)
53 1d7m_A Cortexillin I; coiled-c 60.8 89 0.0031 28.7 10.9 69 453-522 14-87 (101)
54 3swk_A Vimentin; cytoskeleton, 58.9 42 0.0014 30.2 8.6 31 363-393 7-37 (86)
55 3s4r_A Vimentin; alpha-helix, 57.4 1.1E+02 0.0039 27.7 11.4 62 367-432 20-81 (93)
56 3a7o_A Autophagy protein 16; c 57.3 39 0.0013 29.8 7.6 51 853-903 21-71 (75)
57 1deq_A Fibrinogen (alpha chain 55.1 2E+02 0.0069 32.5 14.9 28 573-600 52-79 (390)
58 3swk_A Vimentin; cytoskeleton, 53.7 1.2E+02 0.0042 27.1 11.8 37 671-707 5-41 (86)
59 3ni0_A Bone marrow stromal ant 53.5 91 0.0031 28.9 9.8 65 858-922 19-87 (99)
60 3hnw_A Uncharacterized protein 53.4 77 0.0026 30.8 10.2 22 367-388 65-86 (138)
61 3q8t_A Beclin-1; autophagy, AT 52.9 1.4E+02 0.0047 27.3 14.0 89 409-500 6-94 (96)
62 2v4h_A NF-kappa-B essential mo 52.6 1.4E+02 0.0047 28.3 11.2 13 628-640 25-37 (110)
63 2eqb_B RAB guanine nucleotide 52.6 1.1E+02 0.0037 28.4 10.3 35 602-636 40-74 (97)
64 2fxo_A Myosin heavy chain, car 52.4 1.6E+02 0.0055 27.9 19.2 68 671-745 25-92 (129)
65 2jee_A YIIU; FTSZ, septum, coi 51.6 1.1E+02 0.0038 27.5 10.0 65 860-924 9-77 (81)
66 1gk4_A Vimentin; intermediate 49.5 50 0.0017 29.4 7.5 49 903-951 9-61 (84)
67 2eqb_B RAB guanine nucleotide 48.6 1.7E+02 0.0058 27.2 14.5 15 725-739 79-93 (97)
68 2rjz_A PILO protein; structura 47.7 17 0.00059 35.5 4.6 53 889-942 2-54 (147)
69 1l8d_A DNA double-strand break 46.0 1.2E+02 0.0041 27.5 9.8 40 859-898 5-44 (112)
70 3uun_A Dystrophin; triple heli 45.3 1E+02 0.0035 27.2 9.1 81 852-942 35-118 (119)
71 2v4h_A NF-kappa-B essential mo 45.1 1.2E+02 0.0043 28.6 9.6 34 342-375 24-57 (110)
72 1wt6_A Myotonin-protein kinase 44.5 1.1E+02 0.0039 27.5 8.8 34 593-637 36-69 (81)
73 3oja_A Leucine-rich immune mol 42.9 4E+02 0.014 29.8 15.6 36 443-478 440-475 (487)
74 1x8y_A Lamin A/C; structural p 42.7 46 0.0016 29.8 6.2 48 904-951 12-63 (86)
75 3s4r_A Vimentin; alpha-helix, 42.3 2E+02 0.0068 26.1 12.1 30 671-700 14-43 (93)
76 1f5n_A Interferon-induced guan 40.6 2.4E+02 0.0084 33.3 13.6 19 398-416 517-535 (592)
77 3cvf_A Homer-3, homer protein 37.9 2.2E+02 0.0076 25.4 10.3 61 556-616 13-73 (79)
78 1dh3_A Transcription factor CR 37.8 1.2E+02 0.0041 25.0 7.5 42 351-392 7-51 (55)
79 3cve_A Homer protein homolog 1 37.5 2.1E+02 0.0073 25.1 10.8 61 556-616 7-67 (72)
80 2wt7_B Transcription factor MA 35.8 1.4E+02 0.0047 27.4 8.2 56 862-921 33-88 (90)
81 3jsv_C NF-kappa-B essential mo 35.7 2.5E+02 0.0086 25.9 9.9 9 699-707 52-60 (94)
82 2k48_A Nucleoprotein; viral pr 35.6 1.5E+02 0.005 28.0 8.4 68 341-426 34-101 (107)
83 3s9g_A Protein hexim1; cyclin 35.5 1.7E+02 0.0057 27.4 8.6 30 402-431 60-89 (104)
84 3i00_A HIP-I, huntingtin-inter 35.4 57 0.0019 31.2 5.9 13 938-950 107-119 (120)
85 2yy0_A C-MYC-binding protein; 35.3 42 0.0014 27.8 4.3 27 591-617 22-48 (53)
86 3bas_A Myosin heavy chain, str 35.0 2.5E+02 0.0085 25.1 10.8 52 558-613 37-88 (89)
87 4dzn_A Coiled-coil peptide CC- 34.5 64 0.0022 23.8 4.6 27 864-890 2-28 (33)
88 3qne_A Seryl-tRNA synthetase, 34.4 56 0.0019 37.9 6.8 36 857-892 33-68 (485)
89 3cvf_A Homer-3, homer protein 34.0 2.5E+02 0.0087 25.1 9.4 29 679-707 12-40 (79)
90 2dq0_A Seryl-tRNA synthetase; 33.5 1E+02 0.0035 35.3 8.7 36 857-892 31-66 (455)
91 1deq_A Fibrinogen (alpha chain 33.4 5.7E+02 0.02 28.9 15.9 24 457-480 58-81 (390)
92 3nmd_A CGMP dependent protein 32.9 1.2E+02 0.0041 26.8 7.0 21 369-389 46-66 (72)
93 3cve_A Homer protein homolog 1 32.9 2.6E+02 0.0088 24.7 10.7 27 680-706 7-33 (72)
94 3nmd_A CGMP dependent protein 32.7 87 0.003 27.6 6.1 47 853-899 22-68 (72)
95 4gkw_A Spindle assembly abnorm 32.6 3.6E+02 0.012 26.3 17.3 110 648-773 21-138 (167)
96 2e7s_A RAB guanine nucleotide 31.3 3.8E+02 0.013 26.2 11.1 16 725-740 99-114 (135)
97 1wle_A Seryl-tRNA synthetase; 30.9 1.6E+02 0.0056 34.1 9.9 36 857-892 70-105 (501)
98 1deb_A APC protein, adenomatou 29.1 1.4E+02 0.0049 24.7 6.3 23 671-693 22-44 (54)
99 2pnv_A Small conductance calci 29.1 52 0.0018 26.4 3.7 27 397-423 13-39 (43)
100 1m1j_A Fibrinogen alpha subuni 28.9 7.4E+02 0.025 28.7 14.5 47 644-690 110-156 (491)
101 4emc_A Monopolin complex subun 28.1 2.2E+02 0.0075 29.3 9.0 49 854-902 10-58 (190)
102 4h22_A Leucine-rich repeat fli 27.4 2.6E+02 0.0088 26.2 8.6 72 860-934 19-90 (103)
103 4h22_A Leucine-rich repeat fli 27.4 1.3E+02 0.0046 28.1 6.7 63 371-449 24-90 (103)
104 3swy_A Cyclic nucleotide-gated 27.3 2.5E+02 0.0085 22.8 7.4 33 628-660 13-45 (46)
105 4etp_A Kinesin-like protein KA 27.0 1.2E+02 0.0042 34.1 7.8 36 865-900 4-39 (403)
106 3i00_A HIP-I, huntingtin-inter 26.4 2.5E+02 0.0085 26.8 8.6 45 564-608 16-60 (120)
107 3lss_A Seryl-tRNA synthetase; 26.3 2.7E+02 0.0091 32.3 10.5 23 468-490 113-135 (484)
108 1fxk_C Protein (prefoldin); ar 25.6 3.1E+02 0.011 25.6 9.2 40 859-898 3-42 (133)
109 3lss_A Seryl-tRNA synthetase; 24.7 1.8E+02 0.0062 33.7 8.8 36 857-892 37-72 (484)
110 1gd2_E Transcription factor PA 24.5 98 0.0033 27.0 5.0 19 864-882 29-47 (70)
111 3rkg_A Magnesium transporter M 24.0 4.4E+02 0.015 28.1 11.0 69 349-424 123-191 (261)
112 4f61_I Stathmin-like domain R4 24.0 6.7E+02 0.023 26.6 22.4 29 632-660 200-228 (240)
113 2ic6_A Nucleocapsid protein; h 23.9 2.5E+02 0.0086 25.1 7.5 68 341-426 4-71 (78)
114 1t6f_A Geminin; coiled-coil, c 23.6 50 0.0017 25.5 2.6 22 436-457 12-33 (37)
115 2xdj_A Uncharacterized protein 22.9 3.7E+02 0.013 24.0 8.6 52 869-923 4-55 (83)
116 1ci6_A Transcription factor AT 22.8 1.9E+02 0.0063 24.4 6.3 38 864-901 23-60 (63)
117 2dq0_A Seryl-tRNA synthetase; 22.8 1.8E+02 0.0062 33.2 8.3 71 406-490 30-100 (455)
118 3m91_A Proteasome-associated A 22.6 2E+02 0.0068 23.7 6.2 41 857-897 9-49 (51)
119 3he5_B Synzip2; heterodimeric 22.5 2.1E+02 0.0072 23.0 6.0 36 447-482 12-47 (52)
120 1t2k_D Cyclic-AMP-dependent tr 22.0 2.4E+02 0.0081 23.4 6.8 36 864-899 22-57 (61)
121 3qne_A Seryl-tRNA synthetase, 21.8 2.2E+02 0.0075 33.1 8.7 71 406-490 32-102 (485)
122 3swf_A CGMP-gated cation chann 21.4 3.2E+02 0.011 24.2 7.6 36 628-663 15-50 (74)
123 1l8d_A DNA double-strand break 21.1 4.5E+02 0.016 23.6 12.4 25 367-391 21-45 (112)
124 1go4_E MAD1 (mitotic arrest de 20.6 3.4E+02 0.012 25.2 8.1 65 672-736 11-96 (100)
125 3viq_B Mating-type switching p 20.6 1.4E+02 0.0049 27.0 5.4 28 866-893 3-30 (85)
126 2wt7_B Transcription factor MA 20.4 2.9E+02 0.0098 25.3 7.4 48 856-903 40-87 (90)
127 1jnm_A Proto-oncogene C-JUN; B 20.4 1.1E+02 0.0039 25.5 4.5 36 864-899 22-57 (62)
128 3mov_A Lamin-B1; LMNB1, B-type 20.2 1.8E+02 0.0063 26.5 6.2 19 905-923 22-40 (95)
129 3swf_A CGMP-gated cation chann 20.2 4.3E+02 0.015 23.4 8.1 27 678-704 5-31 (74)
130 1wle_A Seryl-tRNA synthetase; 20.1 5.2E+02 0.018 30.0 11.4 23 468-490 125-147 (501)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.97 E-value=0.02 Score=57.47 Aligned_cols=43 Identities=14% Similarity=0.322 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Q 002118 344 LEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVI 386 (964)
Q Consensus 344 ~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~ 386 (964)
|+.|++.|..|...+.....++..+..+++.|......+...+
T Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 43 (284)
T 1c1g_A 1 MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDEL 43 (284)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778887777777554444444444444444444443333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.96 E-value=0.02 Score=57.41 Aligned_cols=7 Identities=29% Similarity=0.439 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 002118 414 RKVYALT 420 (964)
Q Consensus 414 rKlQ~L~ 420 (964)
+|+..+.
T Consensus 6 ~~~~~l~ 12 (284)
T 1c1g_A 6 KKMQMLK 12 (284)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.73 E-value=6.5e-05 Score=94.68 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=13.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Q 002118 339 DSVCELEKLKREMKMMETALQGA 361 (964)
Q Consensus 339 ~~~~e~ekl~~~~~~~~~~l~~~ 361 (964)
....|+..|.+++..+...|...
T Consensus 854 ~~~~El~~L~~eL~el~~~L~~l 876 (1184)
T 1i84_S 854 RQEEEMQAKDEELQRTKERQQKA 876 (1184)
T ss_dssp THHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666655543
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.64 E-value=9.9e-05 Score=93.06 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002118 467 QIRKLRAQIRELEEEKKGLV 486 (964)
Q Consensus 467 iIKKLRakikE~Eee~~~Lk 486 (964)
.++.|+.++..++.++..+.
T Consensus 879 ~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 879 ELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.71 E-value=0.62 Score=49.24 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHH
Q 002118 554 LESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQ 633 (964)
Q Consensus 554 Le~~lkEaeEre~~L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQ 633 (964)
++..+.++.++.+.+...+..+...+............++...+..+...+..+..+-+++..+++ .+||..|+.+.
T Consensus 109 lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~---~~lL~~Yerir 185 (256)
T 3na7_A 109 ANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTE---PKIYSFYERIR 185 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHH
Confidence 444555555555556666666777776666666666778888888888888888889999999887 58999999887
Q ss_pred HH
Q 002118 634 ET 635 (964)
Q Consensus 634 aQ 635 (964)
..
T Consensus 186 ~~ 187 (256)
T 3na7_A 186 RW 187 (256)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 6
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.28 E-value=0.32 Score=49.13 Aligned_cols=140 Identities=17% Similarity=0.172 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 002118 563 ERETMLVQALEELRQTLSRTEQQAVF---REDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARR 639 (964)
Q Consensus 563 Ere~~L~qqIedLRe~LeRaeq~a~~---rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asq 639 (964)
++...|..|+.++..+|...-+.+.+ .--++..-++.++..+.++..++--|-. .--.|=+++-.||+++..=
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~----~k~~Leke~~~LQa~L~qE 81 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILEN----SKSQTDKDYYQLQAILEAE 81 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 34456777888888888755443332 2334444444444444444444433332 2223556888999999998
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 002118 640 AEAWAAVER---SLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLR----AEQTQLTKSLEKE 706 (964)
Q Consensus 640 senWe~iE~---sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR----~e~~~Lq~qLE~E 706 (964)
..+|....- -|..|+..++..++....++..+-...+.+..++..+|-+-+++. .++..|+..++.+
T Consensus 82 r~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE 155 (168)
T 3o0z_A 82 RRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQE 155 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 888876654 677888888888888888888777777777888888887777665 5566666666544
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.86 E-value=1.8 Score=45.77 Aligned_cols=130 Identities=15% Similarity=0.204 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH--
Q 002118 342 CELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYAL-- 419 (964)
Q Consensus 342 ~e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L-- 419 (964)
.+|..+-.+|..+...+...-..+..+..+++.|......++..+..+...- ..++.--+.+..||...+.++..+
T Consensus 11 ~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~--~~~e~~i~~~~~ri~~~~~~l~~v~~ 88 (256)
T 3na7_A 11 IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQV--SKNEQTLQDTNAKIASIQKKMSEIKS 88 (256)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3555555566666655555555556666677777777777777776666643 233344455667777777776432
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 002118 420 TKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIR 476 (964)
Q Consensus 420 ~KErD~Lrke~ak~s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakik 476 (964)
.||.++|.+++. .+...+..-.+.|..+|+.=+.+....-.....+..++..+.
T Consensus 89 ~kE~~aL~kEie---~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~ 142 (256)
T 3na7_A 89 ERELRSLNIEED---IAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL 142 (256)
T ss_dssp SSHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244444444432 223344455555666666555554444344444444444333
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.71 E-value=2.3 Score=43.77 Aligned_cols=107 Identities=16% Similarity=0.194 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------cchHHHHHHHHHHHHHHH
Q 002118 567 MLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPES-------TRPLLRQIEAIQETTARR 639 (964)
Q Consensus 567 ~L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eA-------TrPLLRQIEtLQaQ~asq 639 (964)
.+.+.+.+|+..|.-=.+..+-.|.+|-.++..++.++..+..++..|..-+-.. ..-...+|..||..+..-
T Consensus 21 ~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l 100 (189)
T 2v71_A 21 KYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQT 100 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666655566666677777777777777777666666666521111 111122344444444332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 640 AEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQ 677 (964)
Q Consensus 640 senWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e 677 (964)
. ..-.+|..+|.++|-.-|...+.+|....-+.+
T Consensus 101 ~----~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD 134 (189)
T 2v71_A 101 R----AIKEQLHKYVRELEQANDDLERAKRATIMSLED 134 (189)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH
Confidence 2 334445555555555555555554444433333
No 9
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.56 E-value=2.2 Score=42.61 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHH
Q 002118 578 TLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTAR 638 (964)
Q Consensus 578 ~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~as 638 (964)
.|+..+..+..||+.+...|..|..+|.++++|++.+.-+|. +|=+.|..|...+..
T Consensus 60 sLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~----kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 60 SLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT----KLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 367778888899999999999999999999999999987553 333444444443333
No 10
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.45 E-value=2.4 Score=42.35 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 002118 600 LQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARRAEAWAAV 646 (964)
Q Consensus 600 Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asqsenWe~i 646 (964)
++.-|+-++.|++.+-+ +|-.|...+.....|+..+
T Consensus 26 ~E~dLEraEERae~aE~-----------k~~eLEeeL~~v~~nlKsL 61 (155)
T 2efr_A 26 LKKLLERAEERAELSEG-----------KSAELEEELKTVTNNLKSL 61 (155)
T ss_dssp HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhccc
Confidence 55555555555555554 4455555555555554443
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.48 E-value=15 Score=51.34 Aligned_cols=90 Identities=11% Similarity=0.166 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002118 650 LNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEG 729 (964)
Q Consensus 650 L~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er~r~~~~r~e~~aakeE~~~le~ 729 (964)
+..+|+.++.+++.+..+=..++.++.++..++..|..+++.+..+...|+.+++....|+. +|..=+..|.+
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~-------rA~~Li~gL~~ 2084 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD-------RSIALLDNLNS 2084 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhh
Confidence 33444555555555555544555556666666777777777777777777766665543322 22222333444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002118 730 RANQLEEEIKELRRKHK 746 (964)
Q Consensus 730 r~~qLEeeL~elr~k~~ 746 (964)
...++.+.+..++..+.
T Consensus 2085 Ek~RW~~~~~~l~~~~~ 2101 (3245)
T 3vkg_A 2085 ERGRWEQQSENFNTQMS 2101 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH
Confidence 44455555555554443
No 12
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.20 E-value=5.3 Score=40.35 Aligned_cols=110 Identities=22% Similarity=0.231 Sum_probs=74.0
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 620 ESTRPLLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQL 699 (964)
Q Consensus 620 eATrPLLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~L 699 (964)
+-..-|=||++-++.-|..-+++-..+=++- +++.+.+..+... ++++..++..|+..-..+..++..|
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~----tEl~k~~~~~E~~-------~rELq~~~~~L~~~k~~Leke~~~L 74 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSH----TEMSKSISQLESL-------NRELQERNRILENSKSQTDKDYYQL 74 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677899999999988777765544433 4444444333333 4555566778888888888888999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 700 TKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKHKQ 747 (964)
Q Consensus 700 q~qLE~Er~r~~~~r~e~~aakeE~~~le~r~~qLEeeL~elr~k~~~ 747 (964)
+.+|+.+|.. ...+.+....+++|+..|+.++..++..+.+
T Consensus 75 Qa~L~qEr~~-------r~q~se~~~elq~ri~~L~~El~~~k~~~~k 115 (168)
T 3o0z_A 75 QAILEAERRD-------RGHDSEMIGDLQARITSLQEEVKHLKHNLEK 115 (168)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988732 2233456677888888888888888777654
No 13
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.88 E-value=0.86 Score=43.65 Aligned_cols=103 Identities=17% Similarity=0.262 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002118 639 RAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYL 718 (964)
Q Consensus 639 qsenWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er~r~~~~r~e~~ 718 (964)
+..||..+|.-+..|+.++..........=+..+..+.+++..+..|+.++..++.....|...|..-..+
T Consensus 2 a~knr~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~--------- 72 (129)
T 3tnu_B 2 ANRSRTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR--------- 72 (129)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---------
Confidence 45789999999999999998876555444455667788888888999999988888777777776543322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 719 AAKEEADTQEGRANQLEEEIKELRRKHKQELQE 751 (964)
Q Consensus 719 aakeE~~~le~r~~qLEeeL~elr~k~~~elqe 751 (964)
...++...+..+..++.+|..+|.+...++.+
T Consensus 73 -~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~E 104 (129)
T 3tnu_B 73 -GELALKDARNKLAELEEALQKAKQDMARLLRE 104 (129)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 12345556677888999999888887665443
No 14
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.46 E-value=0.84 Score=43.88 Aligned_cols=104 Identities=19% Similarity=0.207 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002118 638 RRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEY 717 (964)
Q Consensus 638 sqsenWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er~r~~~~r~e~ 717 (964)
.+..||..+|.-+..++.++..........=+..+..+.+++..+..|+.++..++.....|...|..-..+
T Consensus 3 ia~knr~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~-------- 74 (131)
T 3tnu_A 3 TAEKNRKDAEEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGR-------- 74 (131)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--------
Confidence 456789999999999999998876655554455667778888888889988888887777777666533221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 718 LAAKEEADTQEGRANQLEEEIKELRRKHKQELQE 751 (964)
Q Consensus 718 ~aakeE~~~le~r~~qLEeeL~elr~k~~~elqe 751 (964)
...++...+..+..++.+|..+|.+...++.+
T Consensus 75 --~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~E 106 (131)
T 3tnu_A 75 --YCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQE 106 (131)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344556677888899998888887665443
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.14 E-value=2 Score=54.29 Aligned_cols=22 Identities=23% Similarity=0.438 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 002118 595 RDIEDLQRRYQASERRCEELVT 616 (964)
Q Consensus 595 ~Eis~Le~RLEeaEsRaEELSs 616 (964)
..+.+|+.|+++.+.++.+|..
T Consensus 928 ~kl~eLq~rL~~~e~~n~~L~~ 949 (1080)
T 2dfs_A 928 NKIMQLQRKIDEQNKEYKSLLE 949 (1080)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.10 E-value=3.3 Score=52.28 Aligned_cols=12 Identities=42% Similarity=0.545 Sum_probs=7.7
Q ss_pred cccHHHHHHHHH
Q 002118 338 ADSVCELEKLKR 349 (964)
Q Consensus 338 ~~~~~e~ekl~~ 349 (964)
.+....||+++.
T Consensus 753 ~g~l~~LE~~R~ 764 (1080)
T 2dfs_A 753 AGQVAYLEKIRA 764 (1080)
T ss_dssp TTHHHHHHHHHH
T ss_pred cchhhHHHHHHH
Confidence 355667887754
No 17
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.69 E-value=48 Score=46.62 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=18.9
Q ss_pred ccchhHHHHHHHhHHHHHHHHHHHH
Q 002118 926 GERDEELEELRADIMDLKEMYREQV 950 (964)
Q Consensus 926 GEKsEeVEELraDL~DVKeMYR~QI 950 (964)
-+|.++.++...+|....+-||-.-
T Consensus 2381 ~~kl~~a~~te~~I~~~R~~YrpvA 2405 (3245)
T 3vkg_A 2381 ALKVEETETVMQEISEVSALYNPMA 2405 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4667778888888888888887644
No 18
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=88.28 E-value=4.6 Score=38.55 Aligned_cols=81 Identities=15% Similarity=0.245 Sum_probs=61.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 002118 856 ESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEA-AILPGIQAELDALRRRHSAALELMGERDEELEE 934 (964)
Q Consensus 856 qA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~-~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEE 934 (964)
+-.-+.++.++...|+=|.+-+.+-..-+.=||.|+..++..++.. +++.+|+.++..|++ .|-+.+++||.
T Consensus 24 rN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq-------~Lq~a~ae~er 96 (121)
T 3mq7_A 24 RNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNH-------KLQDASAEVER 96 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 3445778889999999999999999999999999999888766553 335555555555555 66677889999
Q ss_pred HHHhHHHHH
Q 002118 935 LRADIMDLK 943 (964)
Q Consensus 935 LraDL~DVK 943 (964)
||.+..+++
T Consensus 97 lr~~~~~~~ 105 (121)
T 3mq7_A 97 LRRENQVLS 105 (121)
T ss_dssp HHHHHHHHH
T ss_pred HHhhchhhh
Confidence 999888765
No 19
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=88.26 E-value=9.8 Score=36.35 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002118 568 LVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVT 616 (964)
Q Consensus 568 L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSs 616 (964)
-.+.+..|+..|.....+...+-.+|++||..|.++|+++....|.|..
T Consensus 51 CNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 51 ANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467888888888877777778889999999999999998888888875
No 20
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=85.09 E-value=18 Score=34.21 Aligned_cols=102 Identities=20% Similarity=0.293 Sum_probs=61.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHH
Q 002118 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELE 933 (964)
Q Consensus 854 ~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVE 933 (964)
.|.+.|+.+-..+-.+..+-++|..+.+.+...+-.+....++ +......++.++..|..=.+.+--.--+-.-.++
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~---E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~ie 93 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE---EMLQREEAENTLQSFRQDVDNASLARLDLERKVE 93 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence 5566666666666666666666666666666666655554443 2223334444444333333322222222234689
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhcc
Q 002118 934 ELRADIMDLKEMYREQVNLLVNKVI 958 (964)
Q Consensus 934 ELraDL~DVKeMYR~QID~LLkQi~ 958 (964)
-|+.+|.=+|..|.+-|..|-.||.
T Consensus 94 sL~eEl~FLKk~heeEl~eLq~qi~ 118 (119)
T 3ol1_A 94 SLQEEIAFLKKLHEEEIQELQAQIQ 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999887774
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.70 E-value=5.3 Score=45.98 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002118 567 MLVQALEELRQTLSRTEQQAV 587 (964)
Q Consensus 567 ~L~qqIedLRe~LeRaeq~a~ 587 (964)
.++.++.+++..+...+++..
T Consensus 453 ~l~~e~~~~~~~i~~l~~~~~ 473 (597)
T 3oja_B 453 QLEAEVNELRAEVQQLTNEQI 473 (597)
T ss_dssp -CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455666655555444333
No 22
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=83.51 E-value=5.7 Score=35.90 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=48.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 002118 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAAL 922 (964)
Q Consensus 854 ~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlL 922 (964)
+....++.++-++..++..+.+.+..|..|....|.|+.+-..|... +.+...|+.-+.
T Consensus 11 ~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q----------l~eaEe~~~~L~ 69 (89)
T 3bas_A 11 RQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS----------MKQLEDKVEELL 69 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhHHHHHHHHH
Confidence 55677888999999999999999999999999999999988888755 455555554443
No 23
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=81.98 E-value=16 Score=42.55 Aligned_cols=43 Identities=12% Similarity=0.201 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 573 EELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELV 615 (964)
Q Consensus 573 edLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELS 615 (964)
..|+..|.+.+..-..+-.+||+.+.++++.-..+..-...+.
T Consensus 49 CrLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~ 91 (562)
T 3ghg_A 49 CRMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIM 91 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence 3467777777777777777777777776555554444443333
No 24
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=81.78 E-value=42 Score=33.03 Aligned_cols=92 Identities=23% Similarity=0.317 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002118 650 LNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEG 729 (964)
Q Consensus 650 L~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er~r~~~~r~e~~aakeE~~~le~ 729 (964)
.+.+|.++++.+++..+.=..+..+......++..|+.+|..++.-........+..-.++.-...++..+...+...+.
T Consensus 22 a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~ 101 (147)
T 2b9c_A 22 ALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEG 101 (147)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778777777766655666666666777888888887766544444443332222233333334444444444455
Q ss_pred HHHHHHHHHHHH
Q 002118 730 RANQLEEEIKEL 741 (964)
Q Consensus 730 r~~qLEeeL~el 741 (964)
++..|+.+|..+
T Consensus 102 k~~eLEeeL~~~ 113 (147)
T 2b9c_A 102 KCAELEEELKTV 113 (147)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 25
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=80.64 E-value=36 Score=38.17 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 669 RSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKER 707 (964)
Q Consensus 669 r~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er 707 (964)
+.+.+++.++...+..++.|.+........|+..|+++.
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (471)
T 3mq9_A 400 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEK 438 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 445555556655666677777666666777788887654
No 26
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=80.46 E-value=36 Score=31.36 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 651 NLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKER 707 (964)
Q Consensus 651 ~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er 707 (964)
-.++..+....+.|..|--.+..++..+..+...+|.++.++...+..+...|+...
T Consensus 8 KkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~e 64 (101)
T 3u1c_A 8 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVL 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777776667777777777777777777777777777666666544
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.23 E-value=32 Score=39.43 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002118 592 MLRRDIEDLQRRYQASE 608 (964)
Q Consensus 592 eLR~Eis~Le~RLEeaE 608 (964)
.+..++..+...++.++
T Consensus 453 ~l~~e~~~~~~~i~~l~ 469 (597)
T 3oja_B 453 QLEAEVNELRAEVQQLT 469 (597)
T ss_dssp -CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 28
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=79.69 E-value=41 Score=31.81 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002118 727 QEGRANQLEEEIKELRRKHKQE 748 (964)
Q Consensus 727 le~r~~qLEeeL~elr~k~~~e 748 (964)
++.++..|.++|.=++.-|+.+
T Consensus 88 LE~~iesL~eEl~FLKk~heeE 109 (119)
T 3ol1_A 88 LERKVESLQEEIAFLKKLHEEE 109 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444444433
No 29
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=79.51 E-value=43 Score=31.74 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 568 LVQALEELRQTLSRTEQQAVFREDMLRRDIEDL 600 (964)
Q Consensus 568 L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~L 600 (964)
....+.|+..+|..+-++.++.|.+|. |-..|
T Consensus 75 t~~SLeD~E~k~n~aiErnalLE~El~-EKe~L 106 (111)
T 2v66_B 75 TIVSLEDFEQRLNQAIERNAFLESELD-EKESL 106 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 334788999999999999999998886 43333
No 30
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=78.01 E-value=52 Score=38.53 Aligned_cols=68 Identities=10% Similarity=0.194 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 002118 568 LVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTARR 639 (964)
Q Consensus 568 L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~asq 639 (964)
+...|++||..|+.-.+...--+.+.+.-...|..++... .+....+.+.+..|=|+|+.|+.....+
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~----~dNdNtynE~S~ELRRrIqyLKekVdnQ 129 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSA----NNRDNTYNRVSEDLRSRIEVLKRKVIEK 129 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHH----HHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhh----hccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555553333333444443333344444321 1333334455566777777777665554
No 31
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=77.67 E-value=28 Score=30.08 Aligned_cols=66 Identities=8% Similarity=0.147 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 625 LLRQIEAIQETTA-RRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQIS 690 (964)
Q Consensus 625 LLRQIEtLQaQ~a-sqsenWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els 690 (964)
|-.=|..+++||. .+..|+..+|.-+..++.++..........=+..+..+.+++..+..|+.++.
T Consensus 7 L~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 7 CTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445677778885 56778999999999999988776554443333333344444444444444443
No 32
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=77.25 E-value=50 Score=31.28 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 557 RLREAGERETMLVQALEELRQTLSRTEQQ 585 (964)
Q Consensus 557 ~lkEaeEre~~L~qqIedLRe~LeRaeq~ 585 (964)
+.+++..+..+|..+++.|+.++......
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e 32 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQ 32 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566777777777777665433
No 33
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=76.92 E-value=37 Score=29.93 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 650 LNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEK 705 (964)
Q Consensus 650 L~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~ 705 (964)
+..|+..++...+.+..+-..+..++..+..+...++.++..+...+..|..+|+.
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~ 59 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDK 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666666666666666666666555555555543
No 34
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=75.87 E-value=56 Score=31.12 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=15.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 002118 340 SVCELEKLKREMKMMETALQGA 361 (964)
Q Consensus 340 ~~~e~ekl~~~~~~~~~~l~~~ 361 (964)
...||.++..+|..|...|+..
T Consensus 11 ~e~E~~~~~eel~~lke~l~k~ 32 (129)
T 2fxo_A 11 REKEMASMKEEFTRLKEALEKS 32 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777777777777654
No 35
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=75.69 E-value=48 Score=30.30 Aligned_cols=56 Identities=16% Similarity=0.158 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 652 LRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKER 707 (964)
Q Consensus 652 ~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er 707 (964)
.++..+....+.|..|--.+..++..+..+...++.++..+...+..+..+|+...
T Consensus 9 kKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~ 64 (101)
T 3u59_A 9 KKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777776666677777777777777777777777777666666544
No 36
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.53 E-value=21 Score=35.57 Aligned_cols=89 Identities=21% Similarity=0.299 Sum_probs=71.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhHHHHHHHHHHHHHHHHHHhccchhHH
Q 002118 858 ILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEA-----AILPGIQAELDALRRRHSAALELMGERDEEL 932 (964)
Q Consensus 858 ~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~-----~~v~~Le~el~eLqqRY~TlLEMlGEKsEeV 932 (964)
.+...+.|+..|+.++..-...|..+..+..++..++|+|-+.. .-|..-+.+-..++.|...+=.-++++.-.+
T Consensus 52 ~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l 131 (154)
T 2ocy_A 52 ELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLL 131 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557778888888888777777777777777777777775443 4566777888889999999999999999999
Q ss_pred HHHHHhHHHHHHHH
Q 002118 933 EELRADIMDLKEMY 946 (964)
Q Consensus 933 EELraDL~DVKeMY 946 (964)
+-|+.-|.++|.++
T Consensus 132 ~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 132 DTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998753
No 37
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=75.11 E-value=79 Score=32.48 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 553 ELESRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQ 601 (964)
Q Consensus 553 ~Le~~lkEaeEre~~L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le 601 (964)
+++++.+.+..+...|..+++.||.++......+...-..|..++..|.
T Consensus 53 ~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~ 101 (189)
T 2v71_A 53 QAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTR 101 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666677788888888887765555554444444444443
No 38
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=73.98 E-value=13 Score=32.91 Aligned_cols=72 Identities=15% Similarity=0.271 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 345 EKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYA 418 (964)
Q Consensus 345 ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~ 418 (964)
+.+++.|..|..-.+.|.-.+.....++-.....+.++-.+|..|+++- .-++.-.+.+.+|+..+..||..
T Consensus 2 ~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKi--q~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 2 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKL--KGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888887744444444444444455555555555555543 23333344445555555555543
No 39
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=73.51 E-value=71 Score=31.18 Aligned_cols=10 Identities=40% Similarity=0.498 Sum_probs=4.5
Q ss_pred HHHhhHHHHH
Q 002118 438 ALLKEKDEII 447 (964)
Q Consensus 438 a~LkEKDEqI 447 (964)
..|+++.+.+
T Consensus 96 ~~L~e~~e~~ 105 (155)
T 2oto_A 96 KELEEKKEAL 105 (155)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444544444
No 40
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.07 E-value=14 Score=35.32 Aligned_cols=48 Identities=19% Similarity=0.401 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh----ccchhHHHHHHHhHHHHHHHHHHHHH
Q 002118 904 LPGIQAELDALRRRHSAALELM----GERDEELEELRADIMDLKEMYREQVN 951 (964)
Q Consensus 904 v~~Le~el~eLqqRY~TlLEMl----GEKsEeVEELraDL~DVKeMYR~QID 951 (964)
...|+..+.+++.||...|.-| +....++..+|.|++..-.=|..+.|
T Consensus 61 ~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 61 KASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888754 44555666777777777666766664
No 41
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=72.34 E-value=59 Score=29.74 Aligned_cols=76 Identities=20% Similarity=0.299 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 344 LEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTK 421 (964)
Q Consensus 344 ~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~K 421 (964)
|+.+++.|.+|....+.|...+.....++-.+...+.++-.+|..|+++- .-++.-.+.|..++..+..+|....+
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKi--q~lE~eld~~~e~l~~a~~kLe~~ek 79 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKL--KGTEDEVEKYSESVKEAQEKLEQAEK 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999988865555555566666667777777777766654 22333344455555555555544433
No 42
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=71.97 E-value=25 Score=31.65 Aligned_cols=62 Identities=26% Similarity=0.329 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-------HHHHHHHHHHHHHHHHHHHHHH
Q 002118 549 EARAELESRLREAGERETMLVQALEELRQTLSRTEQQA---VF-------REDMLRRDIEDLQRRYQASERR 610 (964)
Q Consensus 549 Ea~~~Le~~lkEaeEre~~L~qqIedLRe~LeRaeq~a---~~-------rEeeLR~Eis~Le~RLEeaEsR 610 (964)
+....|+.++..+-+.+..|+.+|++|+++-....+.. +. .=..|+.|+...+.|++.+=.+
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667777777777677777777777655432222 11 2345666777777777655443
No 43
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=70.41 E-value=65 Score=29.48 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 343 ELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKE 422 (964)
Q Consensus 343 e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KE 422 (964)
+++.|..++..|...=....+.|..+.++.+.|..+...|..+...|. .--..|...-.++.+.+.....+
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~---------~eE~~~w~eyn~~~~ql~e~~dE 75 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLD---------QEEAQYQREYSEFKRQQLELDDE 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666555554443344444545555555555555544444333 33456777777777777777777
Q ss_pred HHHHHHHHh
Q 002118 423 RDTLRREQN 431 (964)
Q Consensus 423 rD~Lrke~a 431 (964)
++++..+..
T Consensus 76 ~~Sl~~q~~ 84 (96)
T 3q8t_A 76 LKSVENQMR 84 (96)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666554
No 44
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.93 E-value=26 Score=33.30 Aligned_cols=48 Identities=23% Similarity=0.368 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHhHHHHHHHHHHHHH
Q 002118 904 LPGIQAELDALRRRHSAALELMGER----DEELEELRADIMDLKEMYREQVN 951 (964)
Q Consensus 904 v~~Le~el~eLqqRY~TlLEMlGEK----sEeVEELraDL~DVKeMYR~QID 951 (964)
...|+..+.+++.||...|.-|..+ ..++..+|.|++..-.=|..+.|
T Consensus 59 ~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 110 (129)
T 3tnu_B 59 CANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMN 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888899998888766544 44555677777777667776664
No 45
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=69.37 E-value=70 Score=29.40 Aligned_cols=49 Identities=16% Similarity=0.336 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcc
Q 002118 344 LEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRK 392 (964)
Q Consensus 344 ~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~ 392 (964)
|+.+++.|.+|....+.|...+.....++-.+...+.++-.+|..|+++
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk 52 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQ 52 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 7888889999888888875444444444445555555555555555444
No 46
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=67.91 E-value=12 Score=33.54 Aligned_cols=55 Identities=27% Similarity=0.454 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC---------ccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 594 RRDIEDLQRRYQASERRCEELVTQVPE---------STRPLLRQIEAIQETTARRAEAWAAVER 648 (964)
Q Consensus 594 R~Eis~Le~RLEeaEsRaEELSssv~e---------ATrPLLRQIEtLQaQ~asqsenWe~iE~ 648 (964)
+.|+..|..+++.+|.+..++-..+.+ -..+|+.++..++..+...-+-|..+|.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777776655322 2578999999999999999999987764
No 47
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=65.66 E-value=77 Score=29.35 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 568 LVQALEELRQTLSRTEQQA---VFREDMLRRDIEDLQRRYQASERRCE 612 (964)
Q Consensus 568 L~qqIedLRe~LeRaeq~a---~~rEeeLR~Eis~Le~RLEeaEsRaE 612 (964)
-.+.+..|+..|.....+. ..+-.+|.+||..|.++|+++....|
T Consensus 44 CNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~~~~~ 91 (99)
T 3ni0_A 44 CNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRIQKE 91 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888888765443 46788999999999999999885543
No 48
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=64.42 E-value=1.5e+02 Score=33.15 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 570 QALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELV 615 (964)
Q Consensus 570 qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELS 615 (964)
..|--|...|+....++..|-.+|.+||..|..+|+.+++..+++.
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 425 HTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777776666777888999999999999999988887764
No 49
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.17 E-value=1.3e+02 Score=30.10 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 654 LQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLR 693 (964)
Q Consensus 654 LaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR 693 (964)
++++...+..+.+|-..+..++.+....+..+..++..++
T Consensus 103 Va~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 103 VADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666677777777777777777776655
No 50
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.33 E-value=9.8 Score=37.21 Aligned_cols=89 Identities=21% Similarity=0.292 Sum_probs=53.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhHHHHHHHHHHHHHHHHHHhccchhHH
Q 002118 858 ILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEA-----AILPGIQAELDALRRRHSAALELMGERDEEL 932 (964)
Q Consensus 858 ~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~-----~~v~~Le~el~eLqqRY~TlLEMlGEKsEeV 932 (964)
-+.-.+.|+..|+.++.+-...|..+-.+..++-.++|+|-+.. .-|..-+.+-..++.|..-+=.-+++|...+
T Consensus 40 ~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll 119 (135)
T 2e7s_A 40 ELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLL 119 (135)
T ss_dssp HTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446667777777776666666666666666666666664432 4456667777888999999999999999999
Q ss_pred HHHHHhHHHHHHHH
Q 002118 933 EELRADIMDLKEMY 946 (964)
Q Consensus 933 EELraDL~DVKeMY 946 (964)
+-|+.-|.++|.++
T Consensus 120 ~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 120 DTLTLQLKNLKKVM 133 (135)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999764
No 51
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=61.37 E-value=1.2e+02 Score=30.27 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 625 LLRQIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTK 701 (964)
Q Consensus 625 LLRQIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~ 701 (964)
+...|..|+..++. |..||.+++..+.+-...=-.++..+..++.+++.+|..+..+..+...|-.
T Consensus 66 ~~~~I~~L~~El~~-----------l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 66 LLNTLAILQKELKS-----------KEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666654 4455555555444333333345555666666666666666666655555443
No 52
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=61.06 E-value=1.1e+02 Score=30.61 Aligned_cols=65 Identities=11% Similarity=0.235 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 681 RINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKH 745 (964)
Q Consensus 681 ri~~LE~els~lR~e~~~Lq~qLE~Er~r~~~~r~e~~aakeE~~~le~r~~qLEeeL~elr~k~ 745 (964)
.+..|+.++..++.++.++...|..-..-.....+++.+..-++..++.++..++.+-..|=.+|
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666777777777766666544333444555666666666666666666655554443333
No 53
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=60.80 E-value=89 Score=28.66 Aligned_cols=69 Identities=25% Similarity=0.249 Sum_probs=0.0
Q ss_pred HhHHhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 002118 453 EGEELSKKQA-----AQEAQIRKLRAQIRELEEEKKGLVTKLQVEENKVESIKRDKTATEKLLQETIEKHQVELG 522 (964)
Q Consensus 453 EGEKLSKkEL-----q~sniIKKLRakikE~Eee~~~Lk~Kle~e~~k~es~kr~~~a~EK~lqe~iek~q~eL~ 522 (964)
||+|+|..+| ...+.+..||.+...-++-+..|..|+......++.-+-..-..|.++ ...++...-|.
T Consensus 14 e~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~RL-sKtEKDkAiLE 87 (101)
T 1d7m_A 14 ESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARL-AKTEKDRAILE 87 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH-hhhhhHHHHHH
No 54
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=58.93 E-value=42 Score=30.15 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=23.8
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHHHHHhccc
Q 002118 363 RQAQAKADEIAKMMNENEHLKAVIEDLKRKT 393 (964)
Q Consensus 363 r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~ 393 (964)
+|+.....+.+.|.-+.++++..++.++.+-
T Consensus 7 ~qi~~l~~e~~~l~~e~dn~~~~~edfk~Ky 37 (86)
T 3swk_A 7 RQVDQLTNDKARVEVERDNLAEDIMRLREKL 37 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556788889899999999888888763
No 55
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=57.38 E-value=1.1e+02 Score=27.73 Aligned_cols=62 Identities=24% Similarity=0.365 Sum_probs=47.2
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002118 367 AKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNK 432 (964)
Q Consensus 367 ~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KErD~Lrke~ak 432 (964)
+--+.|-.|+.+|..|..++..+..+. ...+..-|-.-|..|-+++-.++.++..|-.+..+
T Consensus 20 syIdKVR~LEqqN~~Le~~i~~l~~~~----~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 20 NLIDKVRFLEQQNKILLAELEQLKGQG----KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888888888877643 23567778888999999999999999877666554
No 56
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=57.27 E-value=39 Score=29.75 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=43.1
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002118 853 SAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAI 903 (964)
Q Consensus 853 S~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~ 903 (964)
-.|+..|+-+|-||..|+..++=-..-=..|++||+.|..++.-|..+...
T Consensus 21 ~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~ 71 (75)
T 3a7o_A 21 AILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSD 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 378899999999999999988877777788999999999999888866443
No 57
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=55.07 E-value=2e+02 Score=32.47 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 573 EELRQTLSRTEQQAVFREDMLRRDIEDL 600 (964)
Q Consensus 573 edLRe~LeRaeq~a~~rEeeLR~Eis~L 600 (964)
..|+..|..++.....+-+.|++.+.++
T Consensus 52 CrLqg~Ldk~er~~~~rIe~L~~~L~~~ 79 (390)
T 1deq_A 52 CRMKGLIDEVDQDFTSRINKLRDSLFNY 79 (390)
T ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3477777777544444444444444443
No 58
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=53.74 E-value=1.2e+02 Score=27.08 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 671 VNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKER 707 (964)
Q Consensus 671 ~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er 707 (964)
++.++..+...-..++.++..++....+++...+.+.
T Consensus 5 Lr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~ 41 (86)
T 3swk_A 5 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 41 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555555555555544
No 59
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=53.49 E-value=91 Score=28.89 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=47.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHHHH
Q 002118 858 ILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEA----AILPGIQAELDALRRRHSAAL 922 (964)
Q Consensus 858 ~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~----~~v~~Le~el~eLqqRY~TlL 922 (964)
.-+.++.++...|+=|.+-+++-..-+.-||.|+..++.-++.. +++.+|+.++..|++..+-++
T Consensus 19 vT~lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 19 TTHLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888888888888889999998777766553 456666666666666555443
No 60
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=53.43 E-value=77 Score=30.81 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=11.2
Q ss_pred HhHHHHHHHHhHHHHHHHHHHH
Q 002118 367 AKADEIAKMMNENEHLKAVIED 388 (964)
Q Consensus 367 ~k~~~~A~L~e~N~~L~~~~e~ 388 (964)
+.+++.-++...++.|..+++.
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~ 86 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIEN 86 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544
No 61
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=52.90 E-value=1.4e+02 Score=27.33 Aligned_cols=89 Identities=22% Similarity=0.333 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002118 409 VATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLVTK 488 (964)
Q Consensus 409 I~ALErKlQ~L~KErD~Lrke~ak~s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~Lk~K 488 (964)
+.+++..|+.|..+-..|..++.. +.+-=+.=|..|..|..|-+.|..++.++-.--..++-+.-+...+...+..+
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~---lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q 82 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELED---VEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQ 82 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666665555444322 22222234667888888888888888877766777777888888888888877
Q ss_pred HHHHHHhHHHHH
Q 002118 489 LQVEENKVESIK 500 (964)
Q Consensus 489 le~e~~k~es~k 500 (964)
+.....+++.++
T Consensus 83 ~~~~~~qLdkL~ 94 (96)
T 3q8t_A 83 MRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 777666666554
No 62
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=52.61 E-value=1.4e+02 Score=28.34 Aligned_cols=13 Identities=15% Similarity=0.366 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHH
Q 002118 628 QIEAIQETTARRA 640 (964)
Q Consensus 628 QIEtLQaQ~asqs 640 (964)
+|..|+.++..+-
T Consensus 25 ei~~L~~~L~~AE 37 (110)
T 2v4h_A 25 QLEDLRQQLQQAE 37 (110)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777776666543
No 63
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.58 E-value=1.1e+02 Score=28.43 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHH
Q 002118 602 RRYQASERRCEELVTQVPESTRPLLRQIEAIQETT 636 (964)
Q Consensus 602 ~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~ 636 (964)
.+...+|.....+.+-+-+-|+-|+-+-..|=+.-
T Consensus 40 ~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a 74 (97)
T 2eqb_B 40 ELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444556666666663333
No 64
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=52.37 E-value=1.6e+02 Score=27.95 Aligned_cols=68 Identities=25% Similarity=0.371 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 671 VNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIKELRRKH 745 (964)
Q Consensus 671 ~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~Er~r~~~~r~e~~aakeE~~~le~r~~qLEeeL~elr~k~ 745 (964)
+.+++.........++.....+..+...|..+|+.++..+.+.. +.+..+..+-..|+..|.++..++
T Consensus 25 lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~E-------E~~~~L~~~k~eLe~~l~el~~rl 92 (129)
T 2fxo_A 25 LKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAE-------ERCDQLIKNKIQLEAKVKEMNKRL 92 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555667778888888888888888888775544332 333344444444555555554444
No 65
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=51.63 E-value=1.1e+02 Score=27.50 Aligned_cols=65 Identities=9% Similarity=0.120 Sum_probs=36.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHHHHHHHH
Q 002118 860 RQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRA----EAAILPGIQAELDALRRRHSAALEL 924 (964)
Q Consensus 860 RqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~----~~~~v~~Le~el~eLqqRY~TlLEM 924 (964)
-++|.-|..+=+.|.-|+-.=++|.++-..|..++++++. ...++..|+.+...-+.|..++|--
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444455555544443 2344777888888888898888754
No 66
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=49.50 E-value=50 Score=29.36 Aligned_cols=49 Identities=8% Similarity=0.291 Sum_probs=34.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHh----ccchhHHHHHHHhHHHHHHHHHHHHH
Q 002118 903 ILPGIQAELDALRRRHSAALELM----GERDEELEELRADIMDLKEMYREQVN 951 (964)
Q Consensus 903 ~v~~Le~el~eLqqRY~TlLEMl----GEKsEeVEELraDL~DVKeMYR~QID 951 (964)
....|+..+.++++||...+.-| +....++..+|.|++..-.=|..+.|
T Consensus 9 ~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Lln 61 (84)
T 1gk4_A 9 TNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLN 61 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888888877766 44455666777777776666666654
No 67
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.57 E-value=1.7e+02 Score=27.16 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 002118 725 DTQEGRANQLEEEIK 739 (964)
Q Consensus 725 ~~le~r~~qLEeeL~ 739 (964)
...+.++.+|..+|.
T Consensus 79 ~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 79 YAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344445555555543
No 68
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=47.69 E-value=17 Score=35.46 Aligned_cols=53 Identities=21% Similarity=0.235 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHhHHHH
Q 002118 889 KMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEELRADIMDL 942 (964)
Q Consensus 889 ~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEELraDL~DV 942 (964)
.|..+......+++.++.+++++.+|++++..++..|-.+. ++..|=.||.++
T Consensus 2 ~L~~~~~~k~~~aa~L~~l~~ql~~l~~~l~~l~~~LP~~~-em~~LL~~i~~~ 54 (147)
T 2rjz_A 2 SLKQQFSTKAFQAANLEAYKAQMKEMEESFGALLRQLPSDT-EVPGLLEDITRT 54 (147)
T ss_dssp CHHHHHHHTGGGCSSHHHHHHHHHHHHHHHHHHHHTTTGGG-HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCChh-HHHHHHHHHHHH
Confidence 46667778888889999999999999999999999999554 555666666544
No 69
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=45.98 E-value=1.2e+02 Score=27.54 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=24.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 859 LRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLR 898 (964)
Q Consensus 859 LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr 898 (964)
|.-.+.++..+..+|..|...+..+..++-.+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445666666666666666666666666666665554
No 70
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=45.27 E-value=1e+02 Score=27.16 Aligned_cols=81 Identities=11% Similarity=0.148 Sum_probs=50.0
Q ss_pred hhHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccc
Q 002118 852 PSAFESILR---QKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGER 928 (964)
Q Consensus 852 pS~LqA~LR---qrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEK 928 (964)
|..+..+|+ .+..++...+..+..+...=..| +.-. .........++..+.+|+.||+.+..+..++
T Consensus 35 ~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L----~~~~------~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R 104 (119)
T 3uun_A 35 VEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKL----IGTG------KLSEDEETEVQEQMNLLNSRWECLRVASMEK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHT------CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHcC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555544 45567777777766665544322 1100 0001124568899999999999999999998
Q ss_pred hhHHHHHHHhHHHH
Q 002118 929 DEELEELRADIMDL 942 (964)
Q Consensus 929 sEeVEELraDL~DV 942 (964)
-..+++--.++++.
T Consensus 105 ~~~Le~aL~~~Q~~ 118 (119)
T 3uun_A 105 QSNLHRVLMDLQNQ 118 (119)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhh
Confidence 88887765555543
No 71
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=45.07 E-value=1.2e+02 Score=28.63 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002118 342 CELEKLKREMKMMETALQGAARQAQAKADEIAKM 375 (964)
Q Consensus 342 ~e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L 375 (964)
.+++-|..++...+.+|....++...+..+++.+
T Consensus 24 ~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~ 57 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQH 57 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777666666666664444333333333333
No 72
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=44.51 E-value=1.1e+02 Score=27.47 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHH
Q 002118 593 LRRDIEDLQRRYQASERRCEELVTQVPESTRPLLRQIEAIQETTA 637 (964)
Q Consensus 593 LR~Eis~Le~RLEeaEsRaEELSssv~eATrPLLRQIEtLQaQ~a 637 (964)
.|..+-.++++|++++.|+++|-. +|+.|+..+.
T Consensus 36 vr~~ni~~eskL~eae~rn~eL~~-----------e~~~l~~~~e 69 (81)
T 1wt6_A 36 IRTDNQNFASQLREAEARNRDLEA-----------HVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 456666777888888888888744 5666655543
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=42.88 E-value=4e+02 Score=29.78 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Q 002118 443 KDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREL 478 (964)
Q Consensus 443 KDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~ 478 (964)
.-+.|..|.+|.++|-|.-.+....|.+-+++.++.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 440 YQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 344555555555555554444444444444444443
No 74
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=42.75 E-value=46 Score=29.78 Aligned_cols=48 Identities=23% Similarity=0.379 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhc----cchhHHHHHHHhHHHHHHHHHHHHH
Q 002118 904 LPGIQAELDALRRRHSAALELMG----ERDEELEELRADIMDLKEMYREQVN 951 (964)
Q Consensus 904 v~~Le~el~eLqqRY~TlLEMlG----EKsEeVEELraDL~DVKeMYR~QID 951 (964)
...|+..+.+++.||..-++-|. ....++..+|.|++..-.=|..+.|
T Consensus 12 ~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Lln 63 (86)
T 1x8y_A 12 LAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLD 63 (86)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888776554 4456677788887777666666654
No 75
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=42.34 E-value=2e+02 Score=26.13 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 671 VNERLSQTLSRINVLEAQISCLRAEQTQLT 700 (964)
Q Consensus 671 ~~ekl~e~~~ri~~LE~els~lR~e~~~Lq 700 (964)
+|.++..--.++..||.++..+..++..++
T Consensus 14 LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 14 LNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555567777777776665555443
No 76
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=40.56 E-value=2.4e+02 Score=33.31 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002118 398 LETLREEYHQRVATLERKV 416 (964)
Q Consensus 398 ~~~L~eEy~qRI~ALErKl 416 (964)
+..=...|-++|..|..|+
T Consensus 517 ~~~~~~~~~e~~~ql~~km 535 (592)
T 1f5n_A 517 MEQKERSYQEHLKQLTEKM 535 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555544
No 77
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=37.92 E-value=2.2e+02 Score=25.45 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002118 556 SRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVT 616 (964)
Q Consensus 556 ~~lkEaeEre~~L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSs 616 (964)
.++++++.+...|..+|..|...|+...++......+|+.=+..|-.|+.++----+.|+.
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4556666666678888999999998888777777788888888888888876554444443
No 78
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=37.78 E-value=1.2e+02 Score=25.03 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHH---HHHhHHHHHHHHhHHHHHHHHHHHHhcc
Q 002118 351 MKMMETALQGAARQ---AQAKADEIAKMMNENEHLKAVIEDLKRK 392 (964)
Q Consensus 351 ~~~~~~~l~~~~r~---~~~k~~~~A~L~e~N~~L~~~~e~l~~~ 392 (964)
|+-=+.+...+.|. +..+..+++.|..+|..|+.++..|...
T Consensus 7 ~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 7 MKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444333 5666777888888888888888777653
No 79
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=37.46 E-value=2.1e+02 Score=25.14 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002118 556 SRLREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEELVT 616 (964)
Q Consensus 556 ~~lkEaeEre~~L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEELSs 616 (964)
.++++++.+...|..+|..|...|+...........+|+.=+..|-.|+.++---.+.|+.
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4566666666678889999999998888888888888888888888888876555555544
No 80
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=35.82 E-value=1.4e+02 Score=27.36 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 002118 862 KEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAA 921 (964)
Q Consensus 862 rEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~Tl 921 (964)
+-.-.++.--+..++ .++..|..++..|..+.+.|+.+ ...+..++..+.++|+++
T Consensus 33 lKNRgyAq~CR~Kr~-~q~~~LE~e~~~L~~e~~~L~~e---~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 33 LKNRGYAQSCRYKRV-QQKHHLENEKTQLIQQVEQLKQE---VSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 334444444455555 44577777777777777777755 455567777788888764
No 81
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=35.71 E-value=2.5e+02 Score=25.91 Aligned_cols=9 Identities=22% Similarity=0.438 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 002118 699 LTKSLEKER 707 (964)
Q Consensus 699 Lq~qLE~Er 707 (964)
...+...||
T Consensus 52 Y~~DF~aER 60 (94)
T 3jsv_C 52 YKADFQAER 60 (94)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334455554
No 82
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=35.59 E-value=1.5e+02 Score=27.96 Aligned_cols=68 Identities=25% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 341 VCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALT 420 (964)
Q Consensus 341 ~~e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~ 420 (964)
|..|++|.++|...|..|-- +|| +|...+.+....=++++..+ -.--..-++++|.|+-.|.
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~i-ArQ---------KLkdAe~~~E~DPDevNK~t--------l~~R~~~Vsalq~KiaeLK 95 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVT-ARQ---------KLKDAEKAVEVDPDDVNKST--------LQNRRAAVSTLETKLGELK 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHH---------HHHHHHHHHHHCCCHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHH---------HHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 002118 421 KERDTL 426 (964)
Q Consensus 421 KErD~L 426 (964)
+..+.+
T Consensus 96 rqLAd~ 101 (107)
T 2k48_A 96 RQLADL 101 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 83
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=35.46 E-value=1.7e+02 Score=27.36 Aligned_cols=30 Identities=27% Similarity=0.269 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002118 402 REEYHQRVATLERKVYALTKERDTLRREQN 431 (964)
Q Consensus 402 ~eEy~qRI~ALErKlQ~L~KErD~Lrke~a 431 (964)
...|..||-+|+.++..|..|.-.|+.+..
T Consensus 60 ~~~~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 60 SKRLDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678999999999888888888877654
No 84
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=35.43 E-value=57 Score=31.19 Aligned_cols=13 Identities=46% Similarity=0.526 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHH
Q 002118 938 DIMDLKEMYREQV 950 (964)
Q Consensus 938 DL~DVKeMYR~QI 950 (964)
-...||.+|=.+|
T Consensus 107 rf~KLKe~yteLr 119 (120)
T 3i00_A 107 RYSKLKEKYSELV 119 (120)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHh
Confidence 3455666665444
No 85
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=35.33 E-value=42 Score=27.78 Aligned_cols=27 Identities=19% Similarity=0.514 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002118 591 DMLRRDIEDLQRRYQASERRCEELVTQ 617 (964)
Q Consensus 591 eeLR~Eis~Le~RLEeaEsRaEELSss 617 (964)
+-|+.|+++|+.|+..+..+++|+.+.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777777777777777777653
No 86
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=34.99 E-value=2.5e+02 Score=25.13 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 558 LREAGERETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASERRCEE 613 (964)
Q Consensus 558 lkEaeEre~~L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaEsRaEE 613 (964)
.++++.+...|.++..+|...+..++. +-..|-....+|+.++.+++.|.++
T Consensus 37 rkele~~~~~l~~ek~~L~~ql~eaEe----~~~~L~~~K~eLE~~l~el~~rl~e 88 (89)
T 3bas_A 37 KKELEEQNVTLLEQKNDLFGSMKQLED----KVEELLSKNYHLENEVARLKKLVGE 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444555566666555433322 2344555666777777777777653
No 87
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=34.48 E-value=64 Score=23.83 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 864 GELASYMSRLASMESIRDSLAEELVKM 890 (964)
Q Consensus 864 GEla~LQ~ELarLe~qRdeL~eELV~L 890 (964)
||++.|+.+++.|...=..|.=||..|
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888777776655444444444433
No 88
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=34.41 E-value=56 Score=37.90 Aligned_cols=36 Identities=14% Similarity=0.023 Sum_probs=28.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTA 892 (964)
Q Consensus 857 A~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~ 892 (964)
..|-.++.+...++.++..|.+.|+.++.+|-.++.
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~ 68 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFK 68 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445566777888888888899999988888877765
No 89
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=34.04 E-value=2.5e+02 Score=25.07 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 679 LSRINVLEAQISCLRAEQTQLTKSLEKER 707 (964)
Q Consensus 679 ~~ri~~LE~els~lR~e~~~Lq~qLE~Er 707 (964)
..|+..+|..+..+...+..|+.+|+..+
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555433
No 90
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=33.49 E-value=1e+02 Score=35.30 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=28.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTA 892 (964)
Q Consensus 857 A~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~ 892 (964)
..|-.++.+...++.++..|.+.|+.++.+|-.++.
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~ 66 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRK 66 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456667778888888888899999988888877654
No 91
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=33.43 E-value=5.7e+02 Score=28.90 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 002118 457 LSKKQAAQEAQIRKLRAQIRELEE 480 (964)
Q Consensus 457 LSKkELq~sniIKKLRakikE~Ee 480 (964)
|.+++....+.|-+||..+.++.+
T Consensus 58 Ldk~er~~~~rIe~L~~~L~~~s~ 81 (390)
T 1deq_A 58 IDEVDQDFTSRINKLRDSLFNYQK 81 (390)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHH
Confidence 444556666677777766665543
No 92
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=32.94 E-value=1.2e+02 Score=26.77 Aligned_cols=21 Identities=10% Similarity=0.069 Sum_probs=8.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 002118 369 ADEIAKMMNENEHLKAVIEDL 389 (964)
Q Consensus 369 ~~~~A~L~e~N~~L~~~~e~l 389 (964)
.+++.+......+|+.++..+
T Consensus 46 Ek~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 46 ELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444433
No 93
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=32.86 E-value=2.6e+02 Score=24.66 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 680 SRINVLEAQISCLRAEQTQLTKSLEKE 706 (964)
Q Consensus 680 ~ri~~LE~els~lR~e~~~Lq~qLE~E 706 (964)
.|+..+|..+..+...+..|+.+|+..
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s 33 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKS 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555543
No 94
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=32.65 E-value=87 Score=27.64 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=41.6
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 853 SAFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRA 899 (964)
Q Consensus 853 S~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~ 899 (964)
-.|+.+|+.++.|+......|..|+..=++..++|-.|..+++.++.
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 47999999999999999999999999989999999999888887754
No 95
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=32.61 E-value=3.6e+02 Score=26.33 Aligned_cols=110 Identities=25% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHH
Q 002118 648 RSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLTKSLEK-----ERQRAAENRQEYLAAKE 722 (964)
Q Consensus 648 ~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~-----Er~r~~~~r~e~~aake 722 (964)
.+|+..+.+-+..++-...-=++-+.|...+..|-..-..++..+|++...++..+++ .|+....+.+.+..-|
T Consensus 21 ~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRK- 99 (167)
T 4gkw_A 21 ESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRK- 99 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHH-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHH
Q 002118 723 EADTQEGRANQLEEEIKELRRKHKQ---ELQEALMHRELLQQEIEREKTARVDL 773 (964)
Q Consensus 723 E~~~le~r~~qLEeeL~elr~k~~~---elqea~~~~e~lqq~lE~Ek~~r~el 773 (964)
|.+|.++++. .+.....-...|..+|+.++.+..+.
T Consensus 100 ---------------LrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~ 138 (167)
T 4gkw_A 100 ---------------LGELEADLKEKDSMVESLTETIGILRKELENEKLKAAEN 138 (167)
T ss_dssp ---------------THHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 96
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.34 E-value=3.8e+02 Score=26.18 Aligned_cols=16 Identities=25% Similarity=0.275 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 002118 725 DTQEGRANQLEEEIKE 740 (964)
Q Consensus 725 ~~le~r~~qLEeeL~e 740 (964)
...+.++.+|+..+.+
T Consensus 99 ~~~e~r~~~L~~ql~e 114 (135)
T 2e7s_A 99 YAIEILNKRLTEQLRE 114 (135)
T ss_dssp HHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555543
No 97
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=30.90 E-value=1.6e+02 Score=34.14 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=26.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTA 892 (964)
Q Consensus 857 A~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~ 892 (964)
..|-.++.+...++.++..|.+.|+.+..+|-.++.
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~ 105 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVV 105 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556667777788888888888888888877664
No 98
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=29.07 E-value=1.4e+02 Score=24.71 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002118 671 VNERLSQTLSRINVLEAQISCLR 693 (964)
Q Consensus 671 ~~ekl~e~~~ri~~LE~els~lR 693 (964)
+++.+.+....+..||.+-...+
T Consensus 22 LrrEL~dNS~~lskLE~ets~mK 44 (54)
T 1deb_A 22 LRQELEDNSNHLTKLETEASNMK 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHhhhhhHH
Confidence 33344444444555554444433
No 99
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=29.07 E-value=52 Score=26.37 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 397 ELETLREEYHQRVATLERKVYALTKER 423 (964)
Q Consensus 397 ~~~~L~eEy~qRI~ALErKlQ~L~KEr 423 (964)
++.+=.+++-.||++||.||..|....
T Consensus 13 el~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 13 DLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344446777899999999998776544
No 100
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=28.90 E-value=7.4e+02 Score=28.75 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 644 AAVERSLNLRLQEAEAKAAASEERERSVNERLSQTLSRINVLEAQIS 690 (964)
Q Consensus 644 e~iE~sL~~RLaeaE~~l~~A~eREr~~~ekl~e~~~ri~~LE~els 690 (964)
..+=..|..|+..+..+.+.-..+-+.++.-++....+|.+||..+.
T Consensus 110 ~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 110 GHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455556666556555555556666666666666666665554
No 101
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=28.08 E-value=2.2e+02 Score=29.28 Aligned_cols=49 Identities=14% Similarity=0.183 Sum_probs=32.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002118 854 AFESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAA 902 (964)
Q Consensus 854 ~LqA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~ 902 (964)
.++.+|+..+-.|..|+.|+..|..+=+....||-.|-.++..++..+.
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4677888888899999999999998888888888888888777776653
No 102
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=27.40 E-value=2.6e+02 Score=26.24 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=42.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 002118 860 RQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALELMGERDEELEE 934 (964)
Q Consensus 860 RqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLEMlGEKsEeVEE 934 (964)
-|++.|..++.-++--|--.=.++.+.++.+.+++.+. ...+..++..+..|+..+..+=.-+-++.+.++|
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK---~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI~E 90 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEK---NKEFEREKHAHSILQFQFAEVKEALKQREEMLEP 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC--
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777766666655555555666666666654444 3446666666666776666655555555555543
No 103
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=27.38 E-value=1.3e+02 Score=28.13 Aligned_cols=63 Identities=19% Similarity=0.327 Sum_probs=39.9
Q ss_pred HHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHhhHHHH
Q 002118 371 EIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERDTLRREQNK----KSDAAALLKEKDEI 446 (964)
Q Consensus 371 ~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KErD~Lrke~ak----~s~~~a~LkEKDEq 446 (964)
+++-|.=+.|-|++.++++. +-++.+.|.+...||+.+.+|+.... ...+...|+++|+.
T Consensus 24 EKsal~YqVdlLKD~LEe~e----------------E~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~L 87 (103)
T 4h22_A 24 EKTNFMYQVDTLKDMLLELE----------------EQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEM 87 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777776532 33445566666667777777665542 23456688899988
Q ss_pred HHH
Q 002118 447 INQ 449 (964)
Q Consensus 447 Iaq 449 (964)
|..
T Consensus 88 I~E 90 (103)
T 4h22_A 88 LEP 90 (103)
T ss_dssp C--
T ss_pred HHH
Confidence 864
No 104
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=27.31 E-value=2.5e+02 Score=22.78 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 628 QIEAIQETTARRAEAWAAVERSLNLRLQEAEAK 660 (964)
Q Consensus 628 QIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~ 660 (964)
-++.||+-++.=-..+.+.-..|-+||+.+|.+
T Consensus 13 ~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 13 SLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478899999888888899999999999988864
No 105
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=27.05 E-value=1.2e+02 Score=34.06 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 865 ELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAE 900 (964)
Q Consensus 865 Ela~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~ 900 (964)
++..++.+|..|+.+...+..+|-.+..++.++.+.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 39 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEI 39 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555544
No 106
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=26.37 E-value=2.5e+02 Score=26.79 Aligned_cols=45 Identities=11% Similarity=0.145 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 564 RETMLVQALEELRQTLSRTEQQAVFREDMLRRDIEDLQRRYQASE 608 (964)
Q Consensus 564 re~~L~qqIedLRe~LeRaeq~a~~rEeeLR~Eis~Le~RLEeaE 608 (964)
.+..|+.+|+.|+..|++-...+.+.-..|++-|..|+.-|...+
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788899999999988888888877788887777777666544
No 107
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=26.34 E-value=2.7e+02 Score=32.34 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 002118 468 IRKLRAQIRELEEEKKGLVTKLQ 490 (964)
Q Consensus 468 IKKLRakikE~Eee~~~Lk~Kle 490 (964)
.+.|+.+|++++.+...+..++.
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~ 135 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERD 135 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777766666655444
No 108
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=25.64 E-value=3.1e+02 Score=25.58 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=21.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 859 LRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLR 898 (964)
Q Consensus 859 LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr 898 (964)
++++...+..++.++..|..++..+...+-.+..-.+.++
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~ 42 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLS 42 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666666555555554444443
No 109
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=24.67 E-value=1.8e+02 Score=33.69 Aligned_cols=36 Identities=0% Similarity=-0.067 Sum_probs=28.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTA 892 (964)
Q Consensus 857 A~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~ 892 (964)
..|-.++.+...++.++..|.+.|+.++.+|-.++.
T Consensus 37 d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 37 DAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566777888888888888999988888887765
No 110
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=24.48 E-value=98 Score=27.01 Aligned_cols=19 Identities=11% Similarity=0.351 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 002118 864 GELASYMSRLASMESIRDS 882 (964)
Q Consensus 864 GEla~LQ~ELarLe~qRde 882 (964)
.-|..|..++..|+..-..
T Consensus 29 ~~i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 111
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=23.99 E-value=4.4e+02 Score=28.07 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 349 REMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALTKERD 424 (964)
Q Consensus 349 ~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~KErD 424 (964)
=||+-||.+|..+-..|.+ +...|......+.+.++ .+-+...+..|. .+..+|.+++.|++.+....+
T Consensus 123 FEfraLEa~L~~v~~~Le~---e~~~l~~~~~~~L~~L~---~~i~~~~L~~Ll-~~~k~L~~~~~kv~~vr~~le 191 (261)
T 3rkg_A 123 YEHRALESIFINVMSALET---DFKLHSQICIQILNDLE---NEVNRLKLRHLL-IKSKDLTLFYQKTLLIRDLLD 191 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HSCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---hcCCHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH
Confidence 5788999999988555555 55555555555544444 344456677776 688899999999988866665
No 112
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=23.97 E-value=6.7e+02 Score=26.62 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 632 IQETTARRAEAWAAVERSLNLRLQEAEAK 660 (964)
Q Consensus 632 LQaQ~asqsenWe~iE~sL~~RLaeaE~~ 660 (964)
|+.-+....+|-+++...+..||.+-++.
T Consensus 200 l~~KmE~~kEnRea~~~a~~ErL~ek~k~ 228 (240)
T 4f61_I 200 LAQKMESNKENREAHFAAMLERLQEKDKH 228 (240)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33334444444444445555554444333
No 113
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=23.87 E-value=2.5e+02 Score=25.13 Aligned_cols=68 Identities=22% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 341 VCELEKLKREMKMMETALQGAARQAQAKADEIAKMMNENEHLKAVIEDLKRKTNDAELETLREEYHQRVATLERKVYALT 420 (964)
Q Consensus 341 ~~e~ekl~~~~~~~~~~l~~~~r~~~~k~~~~A~L~e~N~~L~~~~e~l~~~~~~~~~~~L~eEy~qRI~ALErKlQ~L~ 420 (964)
|..|++|..+|...|..|-- +|| +|...+.+.-..=++++... -.--..-+++++.|+-.|.
T Consensus 4 M~~l~eLq~e~~~~E~QL~~-A~Q---------KLkdA~~~~e~DPDevNK~~--------~~~R~~~V~~lq~Ki~elk 65 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVT-TRQ---------KLKDAERAVELDPDDVNKST--------LQSRRAAVSALETKLGELK 65 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHH-HHH---------HHHHHHHHHHHCCCHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHH---------HHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 002118 421 KERDTL 426 (964)
Q Consensus 421 KErD~L 426 (964)
+..+.+
T Consensus 66 rqlAd~ 71 (78)
T 2ic6_A 66 RELADL 71 (78)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 114
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=23.62 E-value=50 Score=25.53 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=17.9
Q ss_pred HHHHHhhHHHHHHHHHHHhHHh
Q 002118 436 AAALLKEKDEIINQVMAEGEEL 457 (964)
Q Consensus 436 ~~a~LkEKDEqIaqLmeEGEKL 457 (964)
+-.-|..||+.|+.|.+|.+-|
T Consensus 12 Lhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 12 LHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHH
Confidence 3456778999999999998766
No 115
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=22.91 E-value=3.7e+02 Score=24.03 Aligned_cols=52 Identities=12% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 002118 869 YMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAILPGIQAELDALRRRHSAALE 923 (964)
Q Consensus 869 LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~v~~Le~el~eLqqRY~TlLE 923 (964)
+..++.+|++.-+....-+..|..+++.++.+ |..|+.+++++....+.+.+
T Consensus 4 ~e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~E---v~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 4 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSD---IDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHH
No 116
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.82 E-value=1.9e+02 Score=24.44 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 864 GELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEA 901 (964)
Q Consensus 864 GEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~ 901 (964)
-+...+..++..|+...+.|..+|-.|..++..|+.-+
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888888888888888888888877776543
No 117
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=22.78 E-value=1.8e+02 Score=33.20 Aligned_cols=71 Identities=28% Similarity=0.331 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 406 HQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGL 485 (964)
Q Consensus 406 ~qRI~ALErKlQ~L~KErD~Lrke~ak~s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~L 485 (964)
+.+|-+|..+...+..+.+.|+.+.+..+. +|..++..|+... .....+|.|+.+|++++++...+
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk----------~i~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~ 95 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAV----------EIGKRRKKGEPVD----ELLAKSREIVKRIGELENEVEEL 95 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHTSCCCTH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhcccccHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666655543322 2333444443211 11233555666666666666665
Q ss_pred HhHHH
Q 002118 486 VTKLQ 490 (964)
Q Consensus 486 k~Kle 490 (964)
..++.
T Consensus 96 ~~~~~ 100 (455)
T 2dq0_A 96 KKKID 100 (455)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 118
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.63 E-value=2e+02 Score=23.72 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=23.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 857 SILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKL 897 (964)
Q Consensus 857 A~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eel 897 (964)
..++.+..++..|..+-.+|...=..++.+|++|-.+++.+
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555566666666666666666666655544
No 119
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=22.46 E-value=2.1e+02 Score=22.96 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=22.4
Q ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 447 INQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEK 482 (964)
Q Consensus 447 IaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~ 482 (964)
|+-|.+..=.|-..+...+.||-.||..|.-++.++
T Consensus 12 iarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 12 IARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 444444444555566666777777887777666544
No 120
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.01 E-value=2.4e+02 Score=23.37 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 864 GELASYMSRLASMESIRDSLAEELVKMTAQCEKLRA 899 (964)
Q Consensus 864 GEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~ 899 (964)
..+..|+.++..|+..-..|..+|..|..++..|+.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666667777777777777777777766666654
No 121
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=21.82 E-value=2.2e+02 Score=33.06 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 406 HQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGL 485 (964)
Q Consensus 406 ~qRI~ALErKlQ~L~KErD~Lrke~ak~s~~~a~LkEKDEqIaqLmeEGEKLSKkELq~sniIKKLRakikE~Eee~~~L 485 (964)
+.+|-+|..+...+..+.+.|+.+.+..+. +|.+++..|+... .....++.|+.+|++++.++..+
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk----------~i~~~k~~~~~~~----~l~~~~~~l~~~i~~le~~~~~~ 97 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQK----------EIGKRFKAKEDAK----DLIAEKEKLSNEKKEIIEKEAEA 97 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHTTCCCH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhcCcccHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666766665543322 3444555554321 12223556666666666666666
Q ss_pred HhHHH
Q 002118 486 VTKLQ 490 (964)
Q Consensus 486 k~Kle 490 (964)
..++.
T Consensus 98 ~~~~~ 102 (485)
T 3qne_A 98 DKNLR 102 (485)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 122
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=21.39 E-value=3.2e+02 Score=24.23 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 628 QIEAIQETTARRAEAWAAVERSLNLRLQEAEAKAAA 663 (964)
Q Consensus 628 QIEtLQaQ~asqsenWe~iE~sL~~RLaeaE~~l~~ 663 (964)
-++.||+-++.=-..+.+.-..|-+||..+|..+..
T Consensus 15 sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 15 SVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 478899999998899999999999999999988754
No 123
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.14 E-value=4.5e+02 Score=23.60 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=16.2
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHhc
Q 002118 367 AKADEIAKMMNENEHLKAVIEDLKR 391 (964)
Q Consensus 367 ~k~~~~A~L~e~N~~L~~~~e~l~~ 391 (964)
.+...++.+.....+|...+..+..
T Consensus 21 ~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 21 EITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344566677777777777777665
No 124
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=20.60 E-value=3.4e+02 Score=25.23 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHhHHHHHHHHHHHHHHHHH
Q 002118 672 NERLSQTLSRINVLEAQISCLRAEQTQLTKSLEK---------------------ERQRAAENRQEYLAAKEEADTQEGR 730 (964)
Q Consensus 672 ~ekl~e~~~ri~~LE~els~lR~e~~~Lq~qLE~---------------------Er~r~~~~r~e~~aakeE~~~le~r 730 (964)
++.+..+..+|..|+.+...++.++..|..+|+. --........++...+.+|..+..+
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 002118 731 ANQLEE 736 (964)
Q Consensus 731 ~~qLEe 736 (964)
+..+++
T Consensus 91 v~~lEe 96 (100)
T 1go4_E 91 LRAMER 96 (100)
T ss_dssp HTTCC-
T ss_pred HHHHhc
No 125
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=20.56 E-value=1.4e+02 Score=27.04 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 866 LASYMSRLASMESIRDSLAEELVKMTAQ 893 (964)
Q Consensus 866 la~LQ~ELarLe~qRdeL~eELV~Lt~e 893 (964)
...++.+++.|..+++.|..+|..+..+
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777766643
No 126
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=20.44 E-value=2.9e+02 Score=25.28 Aligned_cols=48 Identities=6% Similarity=0.113 Sum_probs=38.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002118 856 ESILRQKEGELASYMSRLASMESIRDSLAEELVKMTAQCEKLRAEAAI 903 (964)
Q Consensus 856 qA~LRqrEGEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~~~~~ 903 (964)
++.=..+-.++..|..+...|..+++.|..|+..+..+.+.++.+...
T Consensus 40 q~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 40 QSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455667888888899999999999999999999999988877544
No 127
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=20.42 E-value=1.1e+02 Score=25.48 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 864 GELASYMSRLASMESIRDSLAEELVKMTAQCEKLRA 899 (964)
Q Consensus 864 GEla~LQ~ELarLe~qRdeL~eELV~Lt~e~Eelr~ 899 (964)
..+..|..++..|+...+.|..+|..|..++..|+.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777777666653
No 128
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=20.24 E-value=1.8e+02 Score=26.52 Aligned_cols=19 Identities=5% Similarity=0.043 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 002118 905 PGIQAELDALRRRHSAALE 923 (964)
Q Consensus 905 ~~Le~el~eLqqRY~TlLE 923 (964)
..|+..+.+++.||..-+.
T Consensus 22 ~~LE~~l~e~E~~~~~e~~ 40 (95)
T 3mov_A 22 RACLERIQELEDLLAKEKD 40 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 129
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=20.16 E-value=4.3e+02 Score=23.43 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002118 678 TLSRINVLEAQISCLRAEQTQLTKSLE 704 (964)
Q Consensus 678 ~~~ri~~LE~els~lR~e~~~Lq~qLE 704 (964)
+..++..||.-+..+.+...+|-...+
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ 31 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYE 31 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677666666666666555444
No 130
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=20.14 E-value=5.2e+02 Score=29.98 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 002118 468 IRKLRAQIRELEEEKKGLVTKLQ 490 (964)
Q Consensus 468 IKKLRakikE~Eee~~~Lk~Kle 490 (964)
+|.|+.+|++++.+...+..++.
T Consensus 125 ~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 125 GREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554443
Done!