Query 002119
Match_columns 964
No_of_seqs 298 out of 564
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 13:08:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 1.5E-29 5.2E-34 239.5 14.3 113 63-175 7-121 (130)
2 4i1k_A B3 domain-containing tr 99.8 2.4E-20 8.1E-25 180.4 10.1 99 65-173 44-144 (146)
3 1yel_A AT1G16640; CESG, protei 99.7 2.4E-16 8.3E-21 143.2 10.0 95 67-172 8-102 (104)
4 4b8c_D Glucose-repressible alc 96.8 0.00051 1.8E-08 79.9 3.1 8 438-445 48-55 (727)
5 4b8c_D Glucose-repressible alc 95.9 0.0024 8.3E-08 74.3 1.9 16 431-446 38-53 (727)
6 1na6_A Ecorii, restriction end 94.6 0.034 1.2E-06 62.1 6.0 92 67-159 18-123 (404)
7 3iot_A Maltose-binding protein 88.5 0.11 3.6E-06 56.2 0.7 8 137-144 127-134 (449)
8 3cgm_A SLYD, peptidyl-prolyl C 75.6 6.2 0.00021 38.6 7.3 100 148-263 3-110 (158)
9 2k8i_A SLYD, peptidyl-prolyl C 69.0 13 0.00045 36.8 7.9 102 148-263 3-114 (171)
10 2kfw_A FKBP-type peptidyl-prol 66.7 6.4 0.00022 39.9 5.3 102 148-263 3-114 (196)
11 2kr7_A FKBP-type peptidyl-prol 53.9 33 0.0011 33.0 7.6 104 146-263 5-119 (151)
12 2jng_A Cullin-7, CUL-7; P53 bi 46.6 13 0.00045 35.0 3.3 70 221-303 9-78 (105)
13 4dt4_A FKBP-type 16 kDa peptid 45.1 36 0.0012 33.8 6.4 105 147-263 24-138 (169)
14 3p8d_A Medulloblastoma antigen 44.3 20 0.00068 31.3 3.9 55 230-302 3-57 (67)
15 3o27_A Putative uncharacterize 41.4 21 0.00073 31.4 3.6 34 140-173 31-65 (68)
16 3pr9_A FKBP-type peptidyl-prol 40.8 82 0.0028 30.7 8.1 61 193-263 57-123 (157)
17 1lpl_A Hypothetical 25.4 kDa p 32.9 16 0.00053 33.6 1.5 56 225-290 3-58 (95)
18 3qii_A PHD finger protein 20; 32.5 37 0.0013 31.0 3.8 54 231-302 19-72 (85)
19 3m7a_A Uncharacterized protein 31.8 32 0.0011 33.5 3.6 46 108-156 84-140 (140)
20 1mhn_A SurviVal motor neuron p 31.5 37 0.0013 27.9 3.4 29 232-263 2-30 (59)
21 3oug_A Aspartate 1-decarboxyla 31.3 1.7E+02 0.0059 28.0 8.2 75 70-157 14-91 (114)
22 1pqh_A Aspartate 1-decarboxyla 30.7 2E+02 0.0067 28.6 8.8 73 71-157 29-105 (143)
23 2e63_A KIAA1787 protein; struc 29.4 33 0.0011 34.1 3.3 23 146-168 116-138 (170)
24 1whg_A Tubulin specific chaper 29.0 25 0.00084 33.3 2.2 56 225-290 24-79 (113)
25 2k75_A Uncharacterized protein 28.7 85 0.0029 28.5 5.6 46 107-172 39-88 (106)
26 4a4f_A SurviVal of motor neuro 28.6 44 0.0015 28.0 3.4 56 231-301 6-61 (64)
27 3s6w_A Tudor domain-containing 28.6 42 0.0014 27.0 3.2 28 233-263 1-28 (54)
28 1o7i_A SSB, SSO2364, single st 27.3 1.6E+02 0.0054 27.0 7.2 73 66-171 14-90 (119)
29 3e0e_A Replication protein A; 27.3 1.4E+02 0.0049 26.5 6.8 62 66-159 13-74 (97)
30 3pie_A 5'->3' exoribonuclease 26.7 49 0.0017 41.7 4.8 63 232-302 1064-1128(1155)
31 2cbp_A Cucumber basic protein; 26.2 29 0.00099 31.4 2.1 18 143-160 19-36 (96)
32 1whl_A Cylindromatosis tumor s 24.8 1.3E+02 0.0045 27.3 6.1 54 232-290 6-61 (95)
33 3h8z_A FragIle X mental retard 24.4 75 0.0026 30.6 4.6 58 204-262 28-90 (128)
34 1g5v_A SurviVal motor neuron p 23.9 56 0.0019 29.5 3.5 55 232-301 9-63 (88)
35 2c45_A Aspartate 1-decarboxyla 23.6 2E+02 0.0069 28.3 7.4 75 69-158 10-89 (139)
36 1ix5_A FKBP; ppiase, isomerase 22.8 99 0.0034 29.7 5.2 61 193-263 58-124 (151)
37 2yue_A Protein neuralized; str 22.2 59 0.002 32.3 3.6 20 149-168 107-126 (168)
38 3rdv_A CAP-Gly domain-containi 21.9 26 0.00087 30.7 0.8 40 233-285 2-41 (72)
39 2equ_A PHD finger protein 20-l 21.6 68 0.0023 28.2 3.4 39 232-284 8-46 (74)
40 3dm3_A Replication factor A; p 20.6 2.7E+02 0.0091 25.4 7.3 36 107-159 42-77 (105)
41 3pjy_A Hypothetical signal pep 20.4 1E+02 0.0036 29.6 4.8 46 108-156 70-126 (136)
42 2glw_A PHS018, 92AA long hypot 20.3 97 0.0033 28.0 4.3 69 79-160 11-86 (92)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=1.5e-29 Score=239.48 Aligned_cols=113 Identities=31% Similarity=0.511 Sum_probs=104.3
Q ss_pred CCCCceeEEEeccccCCCCCCceeechhhhhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCcceecccchhh
Q 002119 63 NRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVF 142 (964)
Q Consensus 63 ~~~~~~sF~KtLTaSDVs~~GrLsVPkr~AE~~FPpLD~s~~~PsqeLvakDlhGkeW~FRhiyRgqprRhlLTTGWS~F 142 (964)
.++..++|+|+||+|||+++++|+||+++|++|||.++.....++++|.++|.+|++|+|||+||+++++|+|++||+.|
T Consensus 7 ~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~F 86 (130)
T 1wid_A 7 GRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRF 86 (130)
T ss_dssp -CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHH
T ss_pred CCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHH
Confidence 46677899999999999999999999999999999999866667899999999999999999999989999999999999
Q ss_pred hccCCCCCCCeEEEEEcC--CCcEEEEEEeccCCC
Q 002119 143 VSTKRLFAGDSVLFIRDE--KSQLLLGIRRANRQQ 175 (964)
Q Consensus 143 Vr~KkLvaGDsVVF~R~e--~GeL~VGIRRA~r~~ 175 (964)
|++|+|++||+|+|+|++ ++.|+|+|||+.+..
T Consensus 87 V~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 87 VKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 999999999999999986 467999999998754
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.82 E-value=2.4e-20 Score=180.44 Aligned_cols=99 Identities=23% Similarity=0.309 Sum_probs=88.3
Q ss_pred CCceeEEEeccccCCCCCCceeechhhhhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCcceecccchhhhc
Q 002119 65 QPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVS 144 (964)
Q Consensus 65 ~~~~sF~KtLTaSDVs~~GrLsVPkr~AE~~FPpLD~s~~~PsqeLvakDlhGkeW~FRhiyRgqprRhlLTTGWS~FVr 144 (964)
+..++|+|+||+||+.++++|+||+++|++|||..+ .+++++|. |+.|+|+|+|++. +++|++||+.||+
T Consensus 44 s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~ 113 (146)
T 4i1k_A 44 PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTL 113 (146)
T ss_dssp CSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHH
T ss_pred CCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHH
Confidence 345799999999999987899999999999999754 36888898 6999999999973 7999999999999
Q ss_pred cCCCCCCCeEEEEEcCCC--cEEEEEEeccC
Q 002119 145 TKRLFAGDSVLFIRDEKS--QLLLGIRRANR 173 (964)
Q Consensus 145 ~KkLvaGDsVVF~R~e~G--eL~VGIRRA~r 173 (964)
+++|++||+|||...++. .|.|.|.|+..
T Consensus 114 dn~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 114 ENNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp HTTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred HcCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 999999999999998765 69999999875
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.66 E-value=2.4e-16 Score=143.17 Aligned_cols=95 Identities=25% Similarity=0.407 Sum_probs=83.6
Q ss_pred ceeEEEeccccCCCCCCceeechhhhhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCcceecccchhhhccC
Q 002119 67 TEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTK 146 (964)
Q Consensus 67 ~~sF~KtLTaSDVs~~GrLsVPkr~AE~~FPpLD~s~~~PsqeLvakDlhGkeW~FRhiyRgqprRhlLTTGWS~FVr~K 146 (964)
.+.|.|+|+++|. ..+|.||+++++++.+.+. .+++++|..|++|+++|.+++ .+.+|++||..||+++
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCc--cceEECCHHHHHhcCccCC-------CEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHc
Confidence 4689999999994 4599999999998665433 369999999999999999874 5789999999999999
Q ss_pred CCCCCCeEEEEEcCCCcEEEEEEecc
Q 002119 147 RLFAGDSVLFIRDEKSQLLLGIRRAN 172 (964)
Q Consensus 147 kLvaGDsVVF~R~e~GeL~VGIRRA~ 172 (964)
+|++||.|+|..+++..+.|.|.|..
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~s 102 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGHN 102 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECSS
T ss_pred CCCCCCEEEEEEcCCCeEEEEEECCC
Confidence 99999999999999999999999853
No 4
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.76 E-value=0.00051 Score=79.91 Aligned_cols=8 Identities=25% Similarity=0.148 Sum_probs=3.2
Q ss_pred HHHHHHHh
Q 002119 438 QQQLQHLL 445 (964)
Q Consensus 438 qqq~~~~~ 445 (964)
++|+|...
T Consensus 48 ~~~~~~~~ 55 (727)
T 4b8c_D 48 KLQLHLAA 55 (727)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444333
No 5
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=95.85 E-value=0.0024 Score=74.35 Aligned_cols=16 Identities=13% Similarity=-0.022 Sum_probs=8.7
Q ss_pred CCCCccHHHHHHHHhc
Q 002119 431 SPIAWTQQQQLQHLLQ 446 (964)
Q Consensus 431 ~~~~~~qqqq~~~~~~ 446 (964)
-+..++..+..+++..
T Consensus 38 ~~~~~~~~~~~~~~~~ 53 (727)
T 4b8c_D 38 DPSLLNNPIWKLQLHL 53 (727)
T ss_dssp SCCCTTSHHHHHHHHH
T ss_pred CchhccCchHHHHHHH
Confidence 3444555666655554
No 6
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=94.64 E-value=0.034 Score=62.11 Aligned_cols=92 Identities=22% Similarity=0.275 Sum_probs=66.4
Q ss_pred ceeEEEeccccCCCCC----CceeechhhhhhcCCCCC-CCCCCCceEEEE--EeCCCCeEEEEEEEeC------CCCcc
Q 002119 67 TEFFCKTLTASDTSTH----GGFSVPRRAAEKIFPPLD-YSMQPPAQEIVA--RDLHDTTWTFRHIYRG------QPKRH 133 (964)
Q Consensus 67 ~~sF~KtLTaSDVs~~----GrLsVPkr~AE~~FPpLD-~s~~~PsqeLva--kDlhGkeW~FRhiyRg------qprRh 133 (964)
...|+|.|++-|++.+ .+|.+|+..++.+||.|+ .....+...+.+ -|...-++.++.+|.+ ++..|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 4689999999999886 479999988999999888 333345544443 4555556699999986 34456
Q ss_pred eecccch-hhhccCCCCCCCeEEEEEc
Q 002119 134 LLTTGWS-VFVSTKRLFAGDSVLFIRD 159 (964)
Q Consensus 134 lLTTGWS-~FVr~KkLvaGDsVVF~R~ 159 (964)
.||. |. .+.--....+||.+||-+.
T Consensus 98 RLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEee-cCCCCcccccCCCCCEEEEEEe
Confidence 6762 22 3455577889999998765
No 7
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=88.51 E-value=0.11 Score=56.18 Aligned_cols=8 Identities=13% Similarity=0.493 Sum_probs=3.9
Q ss_pred ccchhhhc
Q 002119 137 TGWSVFVS 144 (964)
Q Consensus 137 TGWS~FVr 144 (964)
+-|.+|+.
T Consensus 127 ~Twdel~~ 134 (449)
T 3iot_A 127 KTWEEIPA 134 (449)
T ss_dssp SBGGGHHH
T ss_pred CCHHHHHH
Confidence 34555543
No 8
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=75.56 E-value=6.2 Score=38.58 Aligned_cols=100 Identities=13% Similarity=0.112 Sum_probs=59.6
Q ss_pred CCCCCeEEEE-Ec-CCCcEEEEEEeccCCCCCCCCcccCCCccccchHHHHHHHHhcCCcEEEEEcCCCC------CCcc
Q 002119 148 LFAGDSVLFI-RD-EKSQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRAS------PSEF 219 (964)
Q Consensus 148 LvaGDsVVF~-R~-e~GeL~VGIRRA~r~~~~~~ssvissdsm~~gvLAaAahaaatgs~FtV~Y~PRas------~sEF 219 (964)
.+.||.|.+. +. .+|+.+-.-+ .. -++....+- --+.+|......|..++|.--|... -.-+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~--~~-------f~~G~g~vi-pG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE--LS-------YLHGHRNLI-PGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE--EE-------EETTSSSSC-HHHHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE--EE-------EEECCCCcC-hHHHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 5678888763 21 4666544332 00 011112221 1244555555677888887765432 2346
Q ss_pred ccchHhHhHHHhcccccCceeeeeeecccCccceeeeEEEEecc
Q 002119 220 VIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISD 263 (964)
Q Consensus 220 VVp~~kY~~Am~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd 263 (964)
.|+++.+.+. ..|.+||+|.+ ++++. +.+.|+|+.|.+
T Consensus 73 ~v~~~~f~~~--~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED--AEVVPGAQFYA--QDMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT--SCCCTTCEEEE--EETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC--CCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 7888888642 58999999985 44432 567899999975
No 9
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=68.95 E-value=13 Score=36.80 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=60.0
Q ss_pred CCCCCeEEEE-E--cCCCcEEEEEEeccCCCCCCCCcc-cCCCccccchHHHHHHHHhcCCcEEEEEcCCCCC------C
Q 002119 148 LFAGDSVLFI-R--DEKSQLLLGIRRANRQQPALSSSV-ISSDSMHIGILAAAAHAAANNSPFTIFYNPRASP------S 217 (964)
Q Consensus 148 LvaGDsVVF~-R--~e~GeL~VGIRRA~r~~~~~~ssv-issdsm~~gvLAaAahaaatgs~FtV~Y~PRas~------s 217 (964)
.+.||.|++. . .++|+.+-.-+.. -|-.+ +....+- --+.+|......|..++|..-|-... .
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vi-pG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLI-SGLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS------SCEEEETTSCSSC-SHHHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC------cCEEEEECCCCcc-hHHHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 5678888773 2 3467654433211 11111 1122222 22455555566788888877665432 3
Q ss_pred ccccchHhHhHHHhcccccCceeeeeeecccCccceeeeEEEEecc
Q 002119 218 EFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISD 263 (964)
Q Consensus 218 EFVVp~~kY~~Am~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd 263 (964)
-+.||++.+.. ...+.+||+|.+ ++++. . +.|+|+.|.+
T Consensus 76 v~~v~~~~f~~--~~~~~~G~~~~~--~~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMG--VDELQVGMRFLA--ETDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTT--SSCCCTTCEEEE--EETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCc--ccCccCCcEEEE--ECCCC--c-EEEEEEEEcC
Confidence 35788888854 247999999985 45442 3 6899999975
No 10
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=66.68 E-value=6.4 Score=39.93 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=58.8
Q ss_pred CCCCCeEEEE-E--cCCCcEEEEEEeccCCCCCCCCccc-CCCccccchHHHHHHHHhcCCcEEEEEcCCC------CCC
Q 002119 148 LFAGDSVLFI-R--DEKSQLLLGIRRANRQQPALSSSVI-SSDSMHIGILAAAAHAAANNSPFTIFYNPRA------SPS 217 (964)
Q Consensus 148 LvaGDsVVF~-R--~e~GeL~VGIRRA~r~~~~~~ssvi-ssdsm~~gvLAaAahaaatgs~FtV~Y~PRa------s~s 217 (964)
++.||.|++. + .++|+.+-.-+.. -|..++ ....+ +--+.+|......|..++|+.-|-. .-.
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~v-ipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSL-ISGLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCTT------SCCEEESSSSSS-CHHHHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCCC------CCEEEEECCCCc-chHHHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 5688988773 2 3467654433211 111121 12222 1224445545566777888766543 233
Q ss_pred ccccchHhHhHHHhcccccCceeeeeeecccCccceeeeEEEEecc
Q 002119 218 EFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISD 263 (964)
Q Consensus 218 EFVVp~~kY~~Am~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd 263 (964)
=+.||++.|.. ...+.+||+|.+ ++++- .+.|+|+.|.+
T Consensus 76 V~~vp~~~f~~--~~~~~~G~~~~~--~~~~G---~~~~~V~~v~~ 114 (196)
T 2kfw_A 76 VQRVPKDVFMG--VDELQVGMRFLA--ETDQG---PVPVEITAVED 114 (196)
T ss_dssp CEEECGGGCCC--SSCCCTTCEEEE--EETTE---EEEEEBCCCCS
T ss_pred EEEEEHHHCCC--ccCcccCCEEEE--ECCCC---cEEEEEEEEcC
Confidence 47788888853 247999999964 55442 57899999975
No 11
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=53.95 E-value=33 Score=33.00 Aligned_cols=104 Identities=16% Similarity=0.121 Sum_probs=60.3
Q ss_pred CCCCCCCeEEEE-E--cC-CCcEEEEEEeccCCCCCCCCccc-CCCccccchHHHHHHHHhcCCcEEEEEcCCC------
Q 002119 146 KRLFAGDSVLFI-R--DE-KSQLLLGIRRANRQQPALSSSVI-SSDSMHIGILAAAAHAAANNSPFTIFYNPRA------ 214 (964)
Q Consensus 146 KkLvaGDsVVF~-R--~e-~GeL~VGIRRA~r~~~~~~ssvi-ssdsm~~gvLAaAahaaatgs~FtV~Y~PRa------ 214 (964)
+..+.||.|.+. . .+ +|+.+-.-+.. -|-.++ ....+ +--+.+|......|..++|.--|..
T Consensus 5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~------~p~~f~~G~g~v-ipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~ 77 (151)
T 2kr7_A 5 DLESIKQAALIEYEVREQGSSIVLDSNISK------EPLEFIIGTNQI-IAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE 77 (151)
T ss_dssp CCTTSCCEEEEEEEEEESSCSCEEEESTTT------CCEEEETTCCCS-CHHHHHHHTTCCBTCEEEEEECGGGTTCSSC
T ss_pred cCCCCCCEEEEEEEEEECCCCCEEEeCCCC------cCEEEEECCCCc-cHHHHHHHcCCCCCCEEEEEEecHHHcCCCC
Confidence 456789998874 2 23 66654433210 111111 11222 1124445555567777887765543
Q ss_pred CCCccccchHhHhHHHhcccccCceeeeeeecccCccceeeeEEEEecc
Q 002119 215 SPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISD 263 (964)
Q Consensus 215 s~sEFVVp~~kY~~Am~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd 263 (964)
.-.-+.||++.+. ...+.+||+|.+ ++++. ..+.|+|+.|.+
T Consensus 78 ~~~v~~v~~~~f~---~~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 78 SSYLQEVPRDQFE---GIELEKGMSVFG--QTEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp SCEEEEEEGGGGT---TSCCCTTCEEEE--EETTT--EEEEEEEEEECS
T ss_pred cceEEEEcHHHcC---CCCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 2344678888881 257999999985 44432 467899999975
No 12
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=46.57 E-value=13 Score=35.04 Aligned_cols=70 Identities=23% Similarity=0.236 Sum_probs=47.3
Q ss_pred cchHhHhHHHhcccccCceeeeeeecccCccceeeeEEEEeccCCCCCCCCCCccceecccccCCCCCCCCccccCcccc
Q 002119 221 IPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEP 300 (964)
Q Consensus 221 Vp~~kY~~Am~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd~DP~rWp~S~WR~LqV~WDE~~~~qr~eRVSPWEIEp 300 (964)
-.++.|-.-+..+..+|||+||.=+-||-+. -=.|+|. ++. + +-+ ..+|.|.... +.-.|+-=.||.
T Consensus 9 ~s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s~-~-----Gl~--~vQv~W~~~G---~TyWV~~~~~El 75 (105)
T 2jng_A 9 ASGNTYALYVRDTLQPGMRVRMLDDYEEISA-GDEGEFR-QSN-N-----GVP--PVQVFWESTG---RTYWVHWHMLEI 75 (105)
T ss_dssp SSSHHHHHHHHHHCCTTCEEEECSCBTTBCT-TCEEEEE-EEC-T-----TSS--EEEEEETTTT---EEEEEEGGGEEE
T ss_pred ccchhHHHHHHhcCCCccEEeeehhhhhhcc-CCceeEE-ecC-C-----CCc--cceeeehhcC---ceEEEEeehhhh
Confidence 3567888888999999999999854444332 2367777 432 2 122 8899998775 234566667777
Q ss_pred CCC
Q 002119 301 VVT 303 (964)
Q Consensus 301 v~~ 303 (964)
+..
T Consensus 76 lg~ 78 (105)
T 2jng_A 76 LGF 78 (105)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 13
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=45.11 E-value=36 Score=33.80 Aligned_cols=105 Identities=11% Similarity=0.081 Sum_probs=62.7
Q ss_pred CCCCCCeEEEE-E--cCCCcEEEEEEeccCCCCCCCCccc-CCCccccchHHHHHHHHhcCCcEEEEEcCCCCCCc----
Q 002119 147 RLFAGDSVLFI-R--DEKSQLLLGIRRANRQQPALSSSVI-SSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSE---- 218 (964)
Q Consensus 147 kLvaGDsVVF~-R--~e~GeL~VGIRRA~r~~~~~~ssvi-ssdsm~~gvLAaAahaaatgs~FtV~Y~PRas~sE---- 218 (964)
..+.||.|.+. + .++|+.+-.-+...+ |-.++ ....+ +--+.+|......|..++|+.-|.....|
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~-----P~~f~lG~g~v-ipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~ 97 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGK-----PALFRLGDASL-SEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPD 97 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHHTS-----CEEEETTSSSS-CHHHHHHHTTCCTTCEEEEEECGGGTTCCCCGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCCCC-----CEEEEECCCCc-cHHHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 57889999884 3 357775443221111 11111 11111 22345566666778889888766544333
Q ss_pred --cccchHhHhHHHhcccccCceeeeeeecccCccceeeeEEEEecc
Q 002119 219 --FVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISD 263 (964)
Q Consensus 219 --FVVp~~kY~~Am~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd 263 (964)
+.||++.+.. ...+.+||+|.+ ++++. ..+.|+|+.|.+
T Consensus 98 lv~~vp~~~f~~--~~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 98 LIQYFSRREFMD--AGEPEIGAIMLF--TAMDG--SEMPGVIREING 138 (169)
T ss_dssp GEEEEEGGGGTT--TCCCCTTCEEEE--ECTTS--CEEEEEEEEEET
T ss_pred HEEEeCHHHCCC--cCCCCCCcEEEE--ECCCC--CEEEEEEEEEcC
Confidence 5788888864 246889999876 44432 467899999985
No 14
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=44.32 E-value=20 Score=31.28 Aligned_cols=55 Identities=11% Similarity=0.196 Sum_probs=39.8
Q ss_pred HhcccccCceeeeeeecccCccceeeeEEEEeccCCCCCCCCCCccceecccccCCCCCCCCccccCccccCC
Q 002119 230 MYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVV 302 (964)
Q Consensus 230 m~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd~DP~rWp~S~WR~LqV~WDE~~~~qr~eRVSPWEIEpv~ 302 (964)
|...|.+|+++--++ + | .++|-|+|++|... ....|.+++.. .+.|..=+|.|+.
T Consensus 3 ~~~~~~vGd~vmArW-~-D--~~yYpA~I~si~~~----------~~Y~V~F~dG~----~etvk~~~ikp~~ 57 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-S-D--CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFS 57 (67)
T ss_dssp --CCCCTTCEEEEEC-T-T--SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred cCcccccCCEEEEEc-C-C--CCEeeEEEEEECCC----------CeEEEEEeCCc----eEEEeHHHcccCC
Confidence 456899999999999 2 2 47999999999752 45889999843 3566666666554
No 15
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=41.36 E-value=21 Score=31.36 Aligned_cols=34 Identities=9% Similarity=0.261 Sum_probs=29.7
Q ss_pred hhhhccCCCCCCCeEEEEEcC-CCcEEEEEEeccC
Q 002119 140 SVFVSTKRLFAGDSVLFIRDE-KSQLLLGIRRANR 173 (964)
Q Consensus 140 S~FVr~KkLvaGDsVVF~R~e-~GeL~VGIRRA~r 173 (964)
.+++++-+++.||.+...-++ +|++.++.+|-++
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk 65 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKE 65 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGG
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhh
Confidence 489999999999999998864 8889999999654
No 16
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=40.79 E-value=82 Score=30.75 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCcEEEEEcCCCCCC------ccccchHhHhHHHhcccccCceeeeeeecccCccceeeeEEEEecc
Q 002119 193 LAAAAHAAANNSPFTIFYNPRASPS------EFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISD 263 (964)
Q Consensus 193 LAaAahaaatgs~FtV~Y~PRas~s------EFVVp~~kY~~Am~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd 263 (964)
+.+|......|..++|+--|-.... =+.||++.+.+. .....+||+|.+ +++ .|+|+.|.+
T Consensus 57 ~eeaL~gm~~Ge~~~v~Ipp~~aYG~~~~~~V~~v~~~~f~~~-~~~~~~G~~~~~--~~~-------~~~V~~v~~ 123 (157)
T 3pr9_A 57 LDEAILEMDVGEEREVVLPPEKAFGKRDPSKIKLIPLSEFTKR-GIKPIKGLTITI--DGI-------PGKIVSINS 123 (157)
T ss_dssp HHHHHHHCCTTCEEEEEECGGGTTCCCCGGGEEEEEHHHHHHT-TCCCCTTCEEEE--TTE-------EEEEEEEET
T ss_pred HHHHHcCCCCCCEEEEEECcHHhcCCCChHhEEEcCHHHCCcc-cCCcCCCcEEEe--cCC-------CeEEEEEcC
Confidence 5667777788999998865543322 267888888653 345778999975 332 589999975
No 17
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=32.90 E-value=16 Score=33.59 Aligned_cols=56 Identities=18% Similarity=0.334 Sum_probs=36.4
Q ss_pred hHhHHHhcccccCceeeeeeecccCccceeeeEEEEeccCCCCCCCCCCccceecccccCCCCCCC
Q 002119 225 KYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERP 290 (964)
Q Consensus 225 kY~~Am~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd~DP~rWp~S~WR~LqV~WDE~~~~qr~ 290 (964)
+.+++....+.+|+|++...... ....|||.=|...+. + .-.| +=|.|||+. +.+.
T Consensus 3 ~~~~~~~~~~~vG~rv~V~~~g~----~~~~GtVryvG~~~~--~-~G~w--vGVElDep~-GKnD 58 (95)
T 1lpl_A 3 KLNEEAAKNIMVGNRCEVTVGAQ----MARRGEVAYVGATKF--K-EGVW--VGVKYDEPV-GKND 58 (95)
T ss_dssp HHHHHHHHTCCTTCEEEECCTTS----CCEEEEEEEEECCSS--S-SSCE--EEEEESSSC-SSBS
T ss_pred hhhhhhhhcCCCCCEEEEccCCC----CceEEEEEEecccCC--C-CCEE--EEEEccCCC-CccC
Confidence 45666667899999998753221 135677777765442 2 3467 779999996 4433
No 18
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=32.48 E-value=37 Score=30.96 Aligned_cols=54 Identities=9% Similarity=0.174 Sum_probs=39.6
Q ss_pred hcccccCceeeeeeecccCccceeeeEEEEeccCCCCCCCCCCccceecccccCCCCCCCCccccCccccCC
Q 002119 231 YTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVV 302 (964)
Q Consensus 231 ~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd~DP~rWp~S~WR~LqV~WDE~~~~qr~eRVSPWEIEpv~ 302 (964)
...|.+|+++--.+ + | .+||-++|++|... ..+.|.+++.. .+.|..=+|.|+.
T Consensus 19 ~~~f~vGd~VlArW-~-D--~~yYPAkI~sV~~~----------~~YtV~F~DG~----~etvk~~~IKp~~ 72 (85)
T 3qii_A 19 SSEFQINEQVLACW-S-D--CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFS 72 (85)
T ss_dssp --CCCTTCEEEEEC-T-T--SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred CcccccCCEEEEEe-C-C--CCEeeEEEEEECCC----------CeEEEEEeCCC----eEEecHHHcccCC
Confidence 46899999999999 3 2 47999999999752 35899999943 3556666666654
No 19
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=31.81 E-value=32 Score=33.47 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=31.8
Q ss_pred eEEEEEeCCCCeEEEEEEEe---------CCCCccee--cccchhhhccCCCCCCCeEEE
Q 002119 108 QEIVARDLHDTTWTFRHIYR---------GQPKRHLL--TTGWSVFVSTKRLFAGDSVLF 156 (964)
Q Consensus 108 qeLvakDlhGkeW~FRhiyR---------gqprRhlL--TTGWS~FVr~KkLvaGDsVVF 156 (964)
.++++.|.+|++=......+ +.+-+|+| ..||. ..+++++||.|.|
T Consensus 84 LDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~~---~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 84 LDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGLA---ARLGIKPGDKVEW 140 (140)
T ss_dssp EEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTHH---HHHTCCTTCEEEC
T ss_pred eEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcChH---HHcCCCCCCEEeC
Confidence 45788888887666654211 12346777 57776 7889999999975
No 20
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=31.52 E-value=37 Score=27.87 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=23.6
Q ss_pred cccccCceeeeeeecccCccceeeeEEEEecc
Q 002119 232 TQVSLGMRFRMMFETEESGVRRYMGTITSISD 263 (964)
Q Consensus 232 ~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd 263 (964)
..|.+|+.+...|..+ ..||.++|+++..
T Consensus 2 ~~~~~G~~c~A~~s~D---g~wYrA~I~~i~~ 30 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSED---GCIYPATIASIDF 30 (59)
T ss_dssp CCCCTTCEEEEECTTT---SCEEEEEEEEEET
T ss_pred CcCCcCCEEEEEECCC---CCEEEEEEEEEcC
Confidence 4699999999999432 2799999999964
No 21
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=31.28 E-value=1.7e+02 Score=28.02 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=51.6
Q ss_pred EEEeccccCCCCCCceeechhhhhhcCCCCCCCCCCCceEEEEEeCC-CCeEEEEEEEeCCCCc--ceecccchhhhccC
Q 002119 70 FCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLH-DTTWTFRHIYRGQPKR--HLLTTGWSVFVSTK 146 (964)
Q Consensus 70 F~KtLTaSDVs~~GrLsVPkr~AE~~FPpLD~s~~~PsqeLvakDlh-GkeW~FRhiyRgqprR--hlLTTGWS~FVr~K 146 (964)
-.-+.|..|..-.|.+.|-.+.++. -+.- |...+.+.|.+ |.+|.- |.+.|.+.. -.|. | .-++
T Consensus 14 HratVT~a~L~Y~GSitID~~Ll~a----A~i~---~~E~V~I~NvnNG~Rf~T-YvI~GerGSg~I~lN-G----AAAr 80 (114)
T 3oug_A 14 SYATVTGKDLFYVGSITIDSEIMKQ----ANII---ENEKVQVVNLNNGERLET-YVIKGEPNSKTIALN-G----PAAR 80 (114)
T ss_dssp EEEECCEEESSCC-CEEEEHHHHHH----TTCC---TTBEEEEEETTTCCEEEE-EEEEECTTSCCEEEE-G----GGGG
T ss_pred cceEEecccccccceEEECHHHHHH----cCCC---cCCEEEEEECCCCceEEE-EEEEccCCCCEEEeC-C----HHHh
Confidence 3457888999989999999988777 2221 24468888864 888876 667765432 2333 3 3667
Q ss_pred CCCCCCeEEEE
Q 002119 147 RLFAGDSVLFI 157 (964)
Q Consensus 147 kLvaGDsVVF~ 157 (964)
...+||.|+++
T Consensus 81 ~~~~GD~vII~ 91 (114)
T 3oug_A 81 RCEIGDQLFII 91 (114)
T ss_dssp GCCTTCEEEEE
T ss_pred ccCCCCEEEEE
Confidence 78899999986
No 22
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=30.68 E-value=2e+02 Score=28.57 Aligned_cols=73 Identities=12% Similarity=0.203 Sum_probs=52.0
Q ss_pred EEeccccCCCCCCceeechhhhhh--cCCCCCCCCCCCceEEEEEeCC-CCeEEEEEEEeCCCCccee-cccchhhhccC
Q 002119 71 CKTLTASDTSTHGGFSVPRRAAEK--IFPPLDYSMQPPAQEIVARDLH-DTTWTFRHIYRGQPKRHLL-TTGWSVFVSTK 146 (964)
Q Consensus 71 ~KtLTaSDVs~~GrLsVPkr~AE~--~FPpLD~s~~~PsqeLvakDlh-GkeW~FRhiyRgqprRhlL-TTGWS~FVr~K 146 (964)
.-+.|..|..-.|.+.|-.+.++. ++| ...+.+.|.+ |..|.- |.+.|.+..-.+ -.| .-++
T Consensus 29 RatVT~AdL~Y~GSITID~dLldaAgIl~---------~EkV~IvNvnNG~RfeT-YvI~GerGSG~I~lNG----AAAr 94 (143)
T 1pqh_A 29 RVKVTHADLHYEGTCAIDQDFLDAAGILE---------NEAIDIWNVTNGKRFST-YAIAAERGSRIISVNG----AAAH 94 (143)
T ss_dssp EEECCBCCSSSCCCEEEEHHHHHHHTCCT---------TCEEEEEETTTCCEEEE-EEEEECTTCCCEECCG----GGGG
T ss_pred ceEEeccccccceeEEECHHHHHHcCCCC---------CCEEEEEECCCCceEEE-EEEEccCCCceEEech----HHHc
Confidence 346889999999999999988776 444 3368888864 888876 677765432222 233 3677
Q ss_pred CCCCCCeEEEE
Q 002119 147 RLFAGDSVLFI 157 (964)
Q Consensus 147 kLvaGDsVVF~ 157 (964)
...+||.|+++
T Consensus 95 l~~~GD~VII~ 105 (143)
T 1pqh_A 95 CASVGDIVIIA 105 (143)
T ss_dssp TCCTTCEEEEE
T ss_pred cCCCCCEEEEE
Confidence 78899999986
No 23
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.41 E-value=33 Score=34.11 Aligned_cols=23 Identities=30% Similarity=0.258 Sum_probs=20.9
Q ss_pred CCCCCCCeEEEEEcCCCcEEEEE
Q 002119 146 KRLFAGDSVLFIRDEKSQLLLGI 168 (964)
Q Consensus 146 KkLvaGDsVVF~R~e~GeL~VGI 168 (964)
..|.+||.|-|+++.+|+|.++|
T Consensus 116 ~~l~~Gd~ig~~~~~~G~l~~~i 138 (170)
T 2e63_A 116 DQLGEGDRVGVERTVAGELRLWV 138 (170)
T ss_dssp GGCCSSCCEEEEECTTSCEEEEE
T ss_pred cccCCCCEEEEEEcCCcEEEEEE
Confidence 45789999999999999999987
No 24
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=28.98 E-value=25 Score=33.30 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=34.7
Q ss_pred hHhHHHhcccccCceeeeeeecccCccceeeeEEEEeccCCCCCCCCCCccceecccccCCCCCCC
Q 002119 225 KYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERP 290 (964)
Q Consensus 225 kY~~Am~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd~DP~rWp~S~WR~LqV~WDE~~~~qr~ 290 (964)
.++++....+.+|+|++....+. ....|||.=|...+. + .-.| +=|.||++. +.+.
T Consensus 24 ~~~~~~~~~~~VG~RV~V~~~g~----~~~~GtVryvG~v~~--~-~G~w--vGVElDep~-GKnD 79 (113)
T 1whg_A 24 SEEKAQASAISVGSRCEVRAPDH----SLRRGTVMYVGLTDF--K-PGYW--VGVRYDEPL-GKND 79 (113)
T ss_dssp HHHHHHHTTSCSSCEEEECCSSS----SCEEEEEEEEEECSS--S-SSEE--EEEEESSSC-CSBB
T ss_pred hHhhhhhhcCCCCCEEEEecCCC----cceEEEEEEecccCC--C-CCEE--EEEEecCCC-CccC
Confidence 34555567899999998764321 124566666654432 2 3467 779999996 4433
No 25
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=28.74 E-value=85 Score=28.55 Aligned_cols=46 Identities=17% Similarity=0.059 Sum_probs=33.5
Q ss_pred ceEEEEEeCCCCeEEEEEEEeCCCCcceecccchhhhccCCCCCCCeEEEEEc----CCCcEEEEEEecc
Q 002119 107 AQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRD----EKSQLLLGIRRAN 172 (964)
Q Consensus 107 sqeLvakDlhGkeW~FRhiyRgqprRhlLTTGWS~FVr~KkLvaGDsVVF~R~----e~GeL~VGIRRA~ 172 (964)
..++.+.|..| +.++++|+.. |.+||+|.+... =+|.+.+.|-|..
T Consensus 39 v~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~ 88 (106)
T 2k75_A 39 VYQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSS 88 (106)
T ss_dssp EEEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEEEEEEEETTEEEEEECTTS
T ss_pred EEEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEeeEEeEECCEEEEEECCcE
Confidence 34789999999 5788888632 889999998743 2677777665543
No 26
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=28.59 E-value=44 Score=28.00 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=36.0
Q ss_pred hcccccCceeeeeeecccCccceeeeEEEEeccCCCCCCCCCCccceecccccCCCCCCCCccccCccccC
Q 002119 231 YTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPV 301 (964)
Q Consensus 231 ~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd~DP~rWp~S~WR~LqV~WDE~~~~qr~eRVSPWEIEpv 301 (964)
...|.+|+.+.-.|..+ ..||.++|.+|.... ....|.+.+-. +.+.|+.=+|.|+
T Consensus 6 ~~~~~vGd~c~A~~s~D---g~wYrA~I~~v~~~~---------~~~~V~fvdYG---n~e~V~~~~Lrpl 61 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSED---GQCYEAEIEEIDEEN---------GTAAITFAGYG---NAEVTPLLNLKPV 61 (64)
T ss_dssp SSCCCTTCEEEEECTTT---SSEEEEEEEEEETTT---------TEEEEEETTTT---EEEEEEGGGEECC
T ss_pred CCCCCCCCEEEEEECCC---CCEEEEEEEEEcCCC---------CEEEEEEEecC---CEEEEeHHHcEeC
Confidence 35799999999999432 279999999997421 13466666543 2344544444443
No 27
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=28.57 E-value=42 Score=26.97 Aligned_cols=28 Identities=7% Similarity=0.130 Sum_probs=21.8
Q ss_pred ccccCceeeeeeecccCccceeeeEEEEecc
Q 002119 233 QVSLGMRFRMMFETEESGVRRYMGTITSISD 263 (964)
Q Consensus 233 ~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd 263 (964)
.|.+|+.+--.|..+ ..||.++|.++..
T Consensus 1 ~wk~G~~c~A~~s~D---g~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWED---NKFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTT---TEEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCC---CCEEEEEEEEEeC
Confidence 489999999999432 2799999999963
No 28
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=27.32 E-value=1.6e+02 Score=26.95 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=45.5
Q ss_pred CceeEEEeccccCCCCCCceeechhhhhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCcceecccchhhhcc
Q 002119 66 PTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVST 145 (964)
Q Consensus 66 ~~~sF~KtLTaSDVs~~GrLsVPkr~AE~~FPpLD~s~~~PsqeLvakDlhGkeW~FRhiyRgqprRhlLTTGWS~FVr~ 145 (964)
.+..+.++++.+++.+ +-+ -++. .+..++.+.|..|. .+..+|+ ..+
T Consensus 14 ~v~~~~~V~~~~~~~~-----~~~---------k~G~--~~~~~~~l~D~TG~---I~~tlW~------------~~~-- 60 (119)
T 1o7i_A 14 SVNVTVRVLEASEARQ-----IQT---------KNGV--RTISEAIVGDETGR---VKLTLWG------------KHA-- 60 (119)
T ss_dssp SEEEEEEEEEECCCEE-----ECC---------TTCC--EEEEEEEEEETTEE---EEEEEEG------------GGT--
T ss_pred cEEEEEEEEECCCCee-----EEe---------cCCC--EEEEEEEEEeCCCE---EEEEEEC------------Chh--
Confidence 4567888888877542 000 0111 13567999999994 6667775 222
Q ss_pred CCCCCCCeEEEEEc----CCCcEEEEEEec
Q 002119 146 KRLFAGDSVLFIRD----EKSQLLLGIRRA 171 (964)
Q Consensus 146 KkLvaGDsVVF~R~----e~GeL~VGIRRA 171 (964)
..+.+||+|.+... -+|.+.+.|.|.
T Consensus 61 ~~~~~G~vv~i~~g~v~~~~g~~qL~i~~~ 90 (119)
T 1o7i_A 61 GSIKEGQVVKIENAWTTAFKGQVQLNAGSK 90 (119)
T ss_dssp TCCCTTCEEEEEEEEEEEETTEEEEEECTT
T ss_pred hcCCCCCEEEEEeEEEEEeCCEEEEEECCC
Confidence 24889999988743 267676666653
No 29
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=27.31 E-value=1.4e+02 Score=26.53 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=38.4
Q ss_pred CceeEEEeccccCCCCCCceeechhhhhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCcceecccchhhhcc
Q 002119 66 PTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVST 145 (964)
Q Consensus 66 ~~~sF~KtLTaSDVs~~GrLsVPkr~AE~~FPpLD~s~~~PsqeLvakDlhGkeW~FRhiyRgqprRhlLTTGWS~FVr~ 145 (964)
.+....|+++..++.. |-.-|++ .....++.+.|..| ..+.+.| ...+..
T Consensus 13 ~v~i~~~V~~~~~~r~--------------~~~~~G~-~~~v~~~~l~DeTG---~I~~tlW------------~~~~~~ 62 (97)
T 3e0e_A 13 SGTINAEVVTAYPKKE--------------FSRKDGT-KGQLKSLFLKDDTG---SIRGTLW------------NELADF 62 (97)
T ss_dssp EEEEEEEEEEECCCEE--------------EC----C-CEEEEEEEEEETTE---EEEEEEE------------GGGGGC
T ss_pred cEEEEEEEEECCCceE--------------EEcCCCC-eeEEEEEEEECCCC---cEEEEEE------------CCcccc
Confidence 4567778888877654 2111221 01244788899988 5565655 445444
Q ss_pred CCCCCCCeEEEEEc
Q 002119 146 KRLFAGDSVLFIRD 159 (964)
Q Consensus 146 KkLvaGDsVVF~R~ 159 (964)
.|.+||+|.| +.
T Consensus 63 -~i~~Gdvv~i-~g 74 (97)
T 3e0e_A 63 -EVKKGDIAEV-SG 74 (97)
T ss_dssp -CCCTTCEEEE-EE
T ss_pred -ccCCCCEEEE-EE
Confidence 8999999999 53
No 30
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=26.72 E-value=49 Score=41.74 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=39.9
Q ss_pred cccccCceeeeeeecccCccceeeeEEEEeccCCCCCCCCCCccceecccccCCCCCC--CCccccCccccCC
Q 002119 232 TQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGER--PSRVSLWETEPVV 302 (964)
Q Consensus 232 ~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd~DP~rWp~S~WR~LqV~WDE~~~~qr--~eRVSPWEIEpv~ 302 (964)
..+.+|+||.|.=+.-..+ --..|||+||.... .=.+|.|=||++=.+.. -.|-|+----.|.
T Consensus 1064 Q~F~LGDRVv~VqdsG~VP-l~~kGTVVGi~~~~-------~~~~ldVvFD~~F~~G~tlggrcs~~RG~~v~ 1128 (1155)
T 3pie_A 1064 QRFHLGDRVMYIQDSGKVP-LHSKGTVVGYTSIG-------KNVSIQVLFDNEIIAGNNFGGRLQTRRGLGLD 1128 (1155)
T ss_pred CcccCCCeEEEecCCCCCc-cccceEEEEEecCC-------CceEEEEEeccCccCCCccccccccccccccc
Confidence 5699999999875532222 12479999998532 24678999999854322 2355554444443
No 31
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=26.19 E-value=29 Score=31.39 Aligned_cols=18 Identities=39% Similarity=0.477 Sum_probs=15.3
Q ss_pred hccCCCCCCCeEEEEEcC
Q 002119 143 VSTKRLFAGDSVLFIRDE 160 (964)
Q Consensus 143 Vr~KkLvaGDsVVF~R~e 160 (964)
+..|+..+||+|+|.-..
T Consensus 19 a~~~~f~vGD~L~F~y~~ 36 (96)
T 2cbp_A 19 PKGKRFRAGDILLFNYNP 36 (96)
T ss_dssp TTTCCBCTTCEEEEECCT
T ss_pred ccCceEcCCCEEEEEecC
Confidence 578999999999997654
No 32
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=24.83 E-value=1.3e+02 Score=27.33 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=33.0
Q ss_pred cccccCceeeeeeecccCccceeeeEEEEeccCCCCCCCCCCccceecccccCC--CCCCC
Q 002119 232 TQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDEST--AGERP 290 (964)
Q Consensus 232 ~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd~DP~rWp~S~WR~LqV~WDE~~--~~qr~ 290 (964)
..+.+|+|++...... + ....|||.=|...++.....-.| +=|+|||+. .+.+.
T Consensus 6 ~~~~VG~rV~V~~~~~--~-~~~~GtVryvG~v~~~~~~~G~w--vGVElDep~~~~GKnD 61 (95)
T 1whl_A 6 SGIDVGCPVKVQLRSG--E-EKFPGVVRFRGPLLAERTVSGIF--FGVELLEEGRGQGFTD 61 (95)
T ss_dssp CCCCSSCEEEEECSSS--S-CEEEEEEEEECCCCSSSSCCCCC--EEEEECSSSCSCCSST
T ss_pred ccCcCCCEEEEecCCC--c-cceeEEEEEeCccCcccCCCceE--EEEEeCCCcccCCCCC
Confidence 4578999998764321 0 12467777777654322234456 679999995 44443
No 33
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=24.44 E-value=75 Score=30.63 Aligned_cols=58 Identities=16% Similarity=0.269 Sum_probs=37.9
Q ss_pred CcEEEEEcCCCCCCccccchHhHhH----HHhcccccCceeeeeeeccc-CccceeeeEEEEec
Q 002119 204 SPFTIFYNPRASPSEFVIPLAKYNK----AMYTQVSLGMRFRMMFETEE-SGVRRYMGTITSIS 262 (964)
Q Consensus 204 s~FtV~Y~PRas~sEFVVp~~kY~~----Am~~~Ws~GMRFRM~FEtEd-ss~rwy~GTItgIs 262 (964)
..++|.|..-. -.|-.||.+.+.- +....+++|+.+...-..+| .+-.||.|+|+.+.
T Consensus 28 d~~~V~f~n~w-~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~k 90 (128)
T 3h8z_A 28 DSVTIFFENNW-QSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMK 90 (128)
T ss_dssp SEEEEEETTCT-TCCEEEEGGGEECCCCC----CCCTTCEEEEEECC---CCCEEEEEEEEEEE
T ss_pred CcEEEEEcccc-CcceEechhhEEcCCCcccccCCCCCCEEEEEecCCCCCcCccEEEEEEEee
Confidence 34778886431 1366777666653 23367899999999887655 34569999999995
No 34
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=23.92 E-value=56 Score=29.49 Aligned_cols=55 Identities=16% Similarity=0.103 Sum_probs=35.4
Q ss_pred cccccCceeeeeeecccCccceeeeEEEEeccCCCCCCCCCCccceecccccCCCCCCCCccccCccccC
Q 002119 232 TQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPV 301 (964)
Q Consensus 232 ~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd~DP~rWp~S~WR~LqV~WDE~~~~qr~eRVSPWEIEpv 301 (964)
..|.+|+.+.-.|.. | ..||.++|.+|... + ..+.|...+-+ +.+.|..=+|-|+
T Consensus 9 ~~~kvGd~C~A~ys~-D--g~wYrA~I~~i~~~------~---~~~~V~fiDYG---N~E~V~~~~Lrp~ 63 (88)
T 1g5v_A 9 QQWKVGDKCSAIWSE-D--GCIYPATIASIDFK------R---ETCVVVYTGYG---NREEQNLSDLLSP 63 (88)
T ss_dssp CCCCSSCEEEEECTT-T--CCEEEEEEEEEETT------T---TEEEEEETTTC---CEEEEEGGGCBCC
T ss_pred CCCCCCCEEEEEECC-C--CCEEEEEEEEecCC------C---CEEEEEEecCC---CEEEEcHHHcccC
Confidence 589999999999942 2 27999999999641 1 23456654443 2345554444443
No 35
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=23.57 E-value=2e+02 Score=28.34 Aligned_cols=75 Identities=13% Similarity=0.235 Sum_probs=53.6
Q ss_pred eEEEeccccCCCCCCceeechhhhhh--cCCCCCCCCCCCceEEEEEeC-CCCeEEEEEEEeCCCCc--ceecccchhhh
Q 002119 69 FFCKTLTASDTSTHGGFSVPRRAAEK--IFPPLDYSMQPPAQEIVARDL-HDTTWTFRHIYRGQPKR--HLLTTGWSVFV 143 (964)
Q Consensus 69 sF~KtLTaSDVs~~GrLsVPkr~AE~--~FPpLD~s~~~PsqeLvakDl-hGkeW~FRhiyRgqprR--hlLTTGWS~FV 143 (964)
+-.-+.|..|..-.|.+.|-.+.++. ++| ...+.+.|. +|..|.- |.+.|.+.. -.|.+.
T Consensus 10 IHRatVT~AdL~Y~GSITID~dLldaAgIl~---------~EkV~IvNvnNG~RfeT-YvI~GerGSG~I~lNGA----- 74 (139)
T 2c45_A 10 IHRATVTCADLHYVGSVTIDADLMDAADLLE---------GEQVTIVDIDNGARLVT-YAITGERGSGVIGINGA----- 74 (139)
T ss_dssp EEEEECCCEESSSCCEEEEEHHHHHHTTCCS---------SCCEEEEETTTCCEEEE-CEEEECTTTTCEEEESS-----
T ss_pred ccceEEeccccccceeeEECHHHHHHcCCCC---------CCEEEEEECCCCceEEE-EEEEccCCCCEEEEchH-----
Confidence 44567899999999999999988777 333 335778886 4888875 666765422 333333
Q ss_pred ccCCCCCCCeEEEEE
Q 002119 144 STKRLFAGDSVLFIR 158 (964)
Q Consensus 144 r~KkLvaGDsVVF~R 158 (964)
-++....||.|+++=
T Consensus 75 AArl~~~GD~vII~a 89 (139)
T 2c45_A 75 AAHLVHPGDLVILIA 89 (139)
T ss_dssp TTTTSCTTCEEEEEE
T ss_pred HHccCCCCCEEEEEE
Confidence 677788999999863
No 36
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=22.80 E-value=99 Score=29.69 Aligned_cols=61 Identities=20% Similarity=0.130 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCcEEEEEcC------CCCCCccccchHhHhHHHhcccccCceeeeeeecccCccceeeeEEEEecc
Q 002119 193 LAAAAHAAANNSPFTIFYNP------RASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISD 263 (964)
Q Consensus 193 LAaAahaaatgs~FtV~Y~P------Ras~sEFVVp~~kY~~Am~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd 263 (964)
+.+|......|..++|.--| +..-.-|.|++..+.. ....+.+||+|.+ ++ ..|+|+.|.+
T Consensus 58 ~eeaL~gm~~Ge~~~v~ipp~~aYG~~~~~~v~~v~~~~f~~-~~~~~~~G~~~~~--~~-------~~~~V~~v~~ 124 (151)
T 1ix5_A 58 FEEAVLDMEVGDEKTVKIPAEKAYGNRNEMLIQKIPRDAFKE-ADFEPEEGMVILA--EG-------IPATITEVTD 124 (151)
T ss_dssp HHHHHHTCCTTCCCEEEECTTTSSCSCCSTTBCCEETHHHHT-STTCCCTTEEEES--SS-------CEEEEEEEET
T ss_pred HHHHHcCCCCCCEEEEEECcHHHCCCCCccEEEEEEHHHcCc-cCCcccccCEEEE--CC-------eEEEEEEEcC
Confidence 45566556677777777554 3334568899998853 1246899999764 32 6899999975
No 37
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=22.19 E-value=59 Score=32.29 Aligned_cols=20 Identities=10% Similarity=0.300 Sum_probs=18.7
Q ss_pred CCCCeEEEEEcCCCcEEEEE
Q 002119 149 FAGDSVLFIRDEKSQLLLGI 168 (964)
Q Consensus 149 vaGDsVVF~R~e~GeL~VGI 168 (964)
..||.+.|+++++|++.++|
T Consensus 107 ~~g~~l~f~v~~~G~l~~~i 126 (168)
T 2yue_A 107 EKDNILYYYVNGAGDVIYGI 126 (168)
T ss_dssp CSSCEEEEEECTTSEEEEEE
T ss_pred cCCCEEEEEEcCCCEEEEEE
Confidence 67999999999999999988
No 38
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=21.89 E-value=26 Score=30.67 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=24.1
Q ss_pred ccccCceeeeeeecccCccceeeeEEEEeccCCCCCCCCCCccceecccccCC
Q 002119 233 QVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDEST 285 (964)
Q Consensus 233 ~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd~DP~rWp~S~WR~LqV~WDE~~ 285 (964)
.|.+|+|+... .+ ..|||.=|...+. .+ -.| +=|.|||+.
T Consensus 2 ~~~vG~rv~v~--g~------~~G~VryvG~~~~--~~-g~w--~GVeld~p~ 41 (72)
T 3rdv_A 2 DFRVGERVWVN--GN------KPGFIQFLGETQF--AP-GQW--AGIVLDEPI 41 (72)
T ss_dssp CCCTTCEEEET--TT------EEEEEEEEECCSS--SS-SCE--EEEEESSSC
T ss_pred CcccCCEEEEC--CC------CEEEEEEeeeCCC--CC-ceE--EEEEECCCC
Confidence 47899998753 21 1456655554432 22 355 569999985
No 39
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.56 E-value=68 Score=28.16 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=30.6
Q ss_pred cccccCceeeeeeecccCccceeeeEEEEeccCCCCCCCCCCccceecccccC
Q 002119 232 TQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDES 284 (964)
Q Consensus 232 ~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd~DP~rWp~S~WR~LqV~WDE~ 284 (964)
..|.+|+++.-.|. | ..||.+||++|.+ + ....|..++-
T Consensus 8 ~~~kvGd~clA~ws--D--g~~Y~A~I~~v~~-------~---~~~~V~f~Dy 46 (74)
T 2equ_A 8 FDFKAGEEVLARWT--D--CRYYPAKIEAINK-------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCTTCEEEEECS--S--SSEEEEEEEEEST-------T---SSEEEEETTS
T ss_pred CCCCCCCEEEEECC--C--CCEEEEEEEEECC-------C---CEEEEEEecC
Confidence 57999999999997 2 3799999999963 1 2467888765
No 40
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=20.55 E-value=2.7e+02 Score=25.35 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=26.3
Q ss_pred ceEEEEEeCCCCeEEEEEEEeCCCCcceecccchhhhccCCCCCCCeEEEEEc
Q 002119 107 AQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRD 159 (964)
Q Consensus 107 sqeLvakDlhGkeW~FRhiyRgqprRhlLTTGWS~FVr~KkLvaGDsVVF~R~ 159 (964)
..++.+.|..| .+|.+.|+ ..+.. .|.+||+|.| +.
T Consensus 42 v~~~~l~D~TG---~IrvtlW~------------~~a~~-~l~~Gdvv~i-~g 77 (105)
T 3dm3_A 42 LKSFIVRDETG---SIRVTLWD------------NLTDI-DVGRGDYVRV-RG 77 (105)
T ss_dssp EEEEEEEETTE---EEEEEEEG------------GGGGS-CCCTTCEEEE-EE
T ss_pred EEEEEEECCCC---cEEEEEEC------------ccccc-ccCCCCEEEE-EE
Confidence 34788999988 47777775 22222 7999999999 64
No 41
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=20.43 E-value=1e+02 Score=29.62 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=31.3
Q ss_pred eEEEEEeCCCCeEEEEEEE---------eCCCCccee--cccchhhhccCCCCCCCeEEE
Q 002119 108 QEIVARDLHDTTWTFRHIY---------RGQPKRHLL--TTGWSVFVSTKRLFAGDSVLF 156 (964)
Q Consensus 108 qeLvakDlhGkeW~FRhiy---------RgqprRhlL--TTGWS~FVr~KkLvaGDsVVF 156 (964)
.++++.|.+|++=...+.- .+.+-+|+| ..||. ..+++++||.|.+
T Consensus 70 LDiiFld~~g~Vv~i~~~~~P~~~~~~~~~~~a~~VLEl~aG~~---~~~gi~~Gd~v~~ 126 (136)
T 3pjy_A 70 LDMLFIASDGTIRTIHENAVPHSEAIIDSREPVAYVLELNAGTV---KRLGVSPGDRLEG 126 (136)
T ss_dssp EEEEEECTTSBEEEEEEEECTTCCCCEECCSCEEEEEEEETTHH---HHHTCCTTCEEEE
T ss_pred eEEEEECCCCEEEEEEccCCCCcCCCCCCCCceeEEEEeCcChH---HhcCCCCCCEEEE
Confidence 3577777777766553222 223456777 67876 7889999999985
No 42
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=20.34 E-value=97 Score=28.04 Aligned_cols=69 Identities=6% Similarity=0.029 Sum_probs=36.5
Q ss_pred CCCCCceeechhhhhhcCCCCCCCCCCCceEEEE---EeCCCCeEEEEEEEeCCCCcceecccch----hhhccCCCCCC
Q 002119 79 TSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVA---RDLHDTTWTFRHIYRGQPKRHLLTTGWS----VFVSTKRLFAG 151 (964)
Q Consensus 79 Vs~~GrLsVPkr~AE~~FPpLD~s~~~PsqeLva---kDlhGkeW~FRhiyRgqprRhlLTTGWS----~FVr~KkLvaG 151 (964)
|+..|+++||+...+. |+... +..+.+ +...|. .-+-.+. ..+-.+|-. .+-+.-+|++|
T Consensus 11 v~~~gqvtiP~~iR~~----LgI~~---GD~V~v~~i~~~~g~--~~~~~~~----~~v~~kGqitIPkeiR~~lgi~~G 77 (92)
T 2glw_A 11 VHRIGRIIIPAGTRKF----YGIEQ---GDFVEIKIVKYEGEE--PKEGTFT----ARVGEQGSVIIPKALRDVIGIKPG 77 (92)
T ss_dssp CBGGGEEECCHHHHHH----HTCCT---TCEEEEEEEEEETTE--EEEEEEE----EECCGGGEEECCHHHHHHHTCCTT
T ss_pred EeCCCEEEecHHHHHH----cCCCC---CCEEEEEEEEecCCc--cceeEEE----EEECcCceEECcHHHHHHcCCCCC
Confidence 3446899999998887 44432 222333 223343 1111111 111123321 34455589999
Q ss_pred CeEEEEEcC
Q 002119 152 DSVLFIRDE 160 (964)
Q Consensus 152 DsVVF~R~e 160 (964)
|.|.|+.++
T Consensus 78 d~l~~~~~~ 86 (92)
T 2glw_A 78 EVIEVLLLG 86 (92)
T ss_dssp CEEEEEEEE
T ss_pred CEEEEEEeC
Confidence 999998863
Done!