BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002120
         (964 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
           Translocation Intermediate
          Length = 802

 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 6/110 (5%)

Query: 656 GWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIL 715
           G+   ++TED  T  ++H  GW+S+Y    R    G  P   +  + Q  RWA G +++L
Sbjct: 334 GFAGETITEDAETALEIHSRGWKSLYI--DRAMIAGLQPETFASFIQQRGRWATGMMQML 391

Query: 716 LSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTG 765
           L ++     G G      +R  Y+NS+ +    +  + +   P I L  G
Sbjct: 392 LLKNPLFRRGLGIA----QRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFG 437



 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 21/129 (16%)

Query: 408 LVYVSREKRPGFDHHKKAGAMNA-LIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM 466
           +VY +RE+    + H KAG M+A L R+   +     ++  D DH  +     R    F+
Sbjct: 214 VVYSTRER----NEHAKAGNMSAALERLKGEL-----VVVFDADHVPSRDFLARTVGYFV 264

Query: 467 MDPTSGKKICYVQFPQRF---DGIDRH----DRYSNRNVVFFDINMKGLDGIQGPIYVGT 519
            DP     +  VQ P  F   D I R+    DR    N +F+    +GLD   G  + G+
Sbjct: 265 EDP----DLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGS 320

Query: 520 GCVFRRQAL 528
             V RR+AL
Sbjct: 321 AAVLRRRAL 329


>pdb|3F8U|B Chain B, TapasinERP57 HETERODIMER
 pdb|3F8U|D Chain D, TapasinERP57 HETERODIMER
          Length = 401

 Score = 30.8 bits (68), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 249 DPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKK 308
           +P +EP LIT  TV+  +    P  +V   +  D    L+F  +  TSE A    P    
Sbjct: 144 EPQQEPVLITMATVVLTVLTHTPAPRV--RLGQDALLDLSFAYMPPTSEAASSLAPGPPP 201

Query: 309 FKIE 312
           F +E
Sbjct: 202 FGLE 205


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.141    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,938,736
Number of Sequences: 62578
Number of extensions: 1156520
Number of successful extensions: 2300
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2296
Number of HSP's gapped (non-prelim): 6
length of query: 964
length of database: 14,973,337
effective HSP length: 108
effective length of query: 856
effective length of database: 8,214,913
effective search space: 7031965528
effective search space used: 7031965528
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)