Query 002123
Match_columns 964
No_of_seqs 623 out of 3423
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 17:01:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002123.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002123hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4660 Protein Mei2, essentia 100.0 1.8E-60 3.9E-65 536.3 23.5 500 224-933 2-529 (549)
2 TIGR01628 PABP-1234 polyadenyl 100.0 4.2E-37 9.1E-42 364.9 22.6 276 125-441 65-368 (562)
3 TIGR01628 PABP-1234 polyadenyl 100.0 2E-34 4.3E-39 342.1 21.0 294 150-487 2-328 (562)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.8E-33 3.9E-38 314.0 21.1 246 148-439 3-351 (352)
5 TIGR01648 hnRNP-R-Q heterogene 100.0 2E-32 4.3E-37 321.8 24.5 337 149-541 59-449 (578)
6 PF04059 RRM_2: RNA recognitio 100.0 3E-33 6.4E-38 259.0 7.5 74 812-885 1-97 (97)
7 KOG0117 Heterogeneous nuclear 100.0 1.3E-30 2.7E-35 287.7 27.5 240 148-441 83-335 (506)
8 KOG0123 Polyadenylate-binding 100.0 2.8E-32 6E-37 307.6 13.4 274 119-441 53-353 (369)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 9.1E-30 2E-34 297.6 24.4 292 150-479 4-428 (481)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 6.4E-29 1.4E-33 290.5 23.4 287 124-437 62-480 (481)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7.2E-28 1.6E-32 268.9 21.9 159 276-438 2-172 (352)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3.5E-27 7.6E-32 276.3 22.1 267 149-436 176-501 (509)
13 TIGR01659 sex-lethal sex-letha 100.0 3E-27 6.5E-32 265.2 20.2 164 272-439 102-277 (346)
14 TIGR01622 SF-CC1 splicing fact 99.9 6.6E-27 1.4E-31 270.6 20.7 254 149-437 90-448 (457)
15 KOG0145 RNA-binding protein EL 99.9 1.8E-26 3.9E-31 240.3 16.3 244 148-437 41-358 (360)
16 KOG0148 Apoptosis-promoting RN 99.9 1.8E-26 4E-31 242.0 16.3 162 277-439 62-240 (321)
17 KOG0123 Polyadenylate-binding 99.9 5E-26 1.1E-30 257.0 18.6 281 150-487 3-313 (369)
18 TIGR01645 half-pint poly-U bin 99.9 2.4E-25 5.3E-30 262.7 19.5 164 275-438 105-285 (612)
19 KOG0127 Nucleolar protein fibr 99.9 1.1E-24 2.4E-29 244.9 19.9 269 149-441 6-382 (678)
20 TIGR01645 half-pint poly-U bin 99.9 2.6E-24 5.7E-29 254.0 21.5 169 147-350 106-282 (612)
21 TIGR01648 hnRNP-R-Q heterogene 99.9 3.4E-24 7.4E-29 252.6 21.9 191 276-480 57-268 (578)
22 KOG0117 Heterogeneous nuclear 99.9 7.4E-24 1.6E-28 234.5 19.1 192 275-480 81-292 (506)
23 TIGR01622 SF-CC1 splicing fact 99.9 9.5E-24 2.1E-28 244.4 19.3 163 273-436 85-265 (457)
24 KOG0144 RNA-binding protein CU 99.9 6.8E-24 1.5E-28 233.7 12.2 165 274-441 31-210 (510)
25 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.1E-22 2.4E-27 238.3 19.4 164 272-437 170-375 (509)
26 KOG0127 Nucleolar protein fibr 99.9 3.3E-22 7.1E-27 225.2 17.4 161 278-438 6-197 (678)
27 KOG0144 RNA-binding protein CU 99.9 1.3E-22 2.8E-27 223.7 12.6 275 123-439 9-506 (510)
28 KOG0131 Splicing factor 3b, su 99.9 2.3E-21 5E-26 194.4 12.0 164 274-440 6-180 (203)
29 KOG0109 RNA-binding protein LA 99.8 1.8E-21 3.8E-26 206.4 9.3 149 278-438 3-151 (346)
30 KOG0145 RNA-binding protein EL 99.8 1.5E-20 3.2E-25 196.4 12.9 162 274-439 38-211 (360)
31 TIGR01659 sex-lethal sex-letha 99.8 1.8E-19 4E-24 202.6 10.1 161 146-352 105-275 (346)
32 KOG0148 Apoptosis-promoting RN 99.8 6.5E-19 1.4E-23 185.6 12.1 177 274-480 3-197 (321)
33 KOG0124 Polypyrimidine tract-b 99.8 5.2E-19 1.1E-23 191.4 10.1 160 277-436 113-289 (544)
34 KOG0110 RNA-binding protein (R 99.8 2.4E-18 5.1E-23 200.0 12.2 162 278-439 516-695 (725)
35 KOG0147 Transcriptional coacti 99.7 2.6E-18 5.6E-23 195.4 9.7 223 202-435 214-526 (549)
36 KOG0146 RNA-binding protein ET 99.7 7.7E-18 1.7E-22 176.8 10.2 165 276-440 18-368 (371)
37 KOG4206 Spliceosomal protein s 99.7 1E-16 2.2E-21 166.5 16.0 163 273-435 5-220 (221)
38 KOG4205 RNA-binding protein mu 99.7 4.9E-17 1.1E-21 179.3 10.5 164 276-441 5-180 (311)
39 KOG0124 Polypyrimidine tract-b 99.7 3.4E-16 7.4E-21 169.8 11.0 252 148-434 113-532 (544)
40 KOG0110 RNA-binding protein (R 99.6 8.2E-16 1.8E-20 179.1 13.9 217 273-491 381-662 (725)
41 KOG0147 Transcriptional coacti 99.6 3.8E-16 8.2E-21 178.0 5.6 164 272-436 174-357 (549)
42 KOG0105 Alternative splicing f 99.6 1.9E-14 4E-19 145.0 14.5 156 275-432 4-185 (241)
43 KOG0109 RNA-binding protein LA 99.6 1.3E-15 2.9E-20 162.1 5.5 148 149-353 3-151 (346)
44 KOG4212 RNA-binding protein hn 99.5 7.2E-13 1.6E-17 147.1 17.7 72 363-434 537-608 (608)
45 PLN03134 glycine-rich RNA-bind 99.5 1.4E-13 3.1E-18 137.2 11.1 82 273-354 30-116 (144)
46 KOG0106 Alternative splicing f 99.5 3.1E-14 6.8E-19 149.2 6.3 151 278-434 2-168 (216)
47 KOG1548 Transcription elongati 99.4 1.5E-12 3.3E-17 141.9 16.6 166 273-438 130-353 (382)
48 PLN03134 glycine-rich RNA-bind 99.4 7.7E-13 1.7E-17 132.0 10.3 78 361-438 33-115 (144)
49 KOG0131 Splicing factor 3b, su 99.4 1.9E-13 4.1E-18 137.9 4.7 165 147-356 8-181 (203)
50 KOG4205 RNA-binding protein mu 99.4 5.9E-13 1.3E-17 147.2 5.9 197 147-389 5-214 (311)
51 PF00076 RRM_1: RNA recognitio 99.3 2.6E-12 5.6E-17 109.8 7.3 66 280-345 1-70 (70)
52 COG0724 RNA-binding proteins ( 99.3 7.9E-12 1.7E-16 130.0 12.4 120 277-396 115-259 (306)
53 KOG1457 RNA binding protein (c 99.3 8.4E-12 1.8E-16 129.3 12.1 150 275-424 32-273 (284)
54 PF00076 RRM_1: RNA recognitio 99.3 5E-12 1.1E-16 108.0 7.7 66 365-430 1-70 (70)
55 KOG4212 RNA-binding protein hn 99.3 3.4E-11 7.3E-16 134.1 15.4 160 275-434 42-291 (608)
56 KOG4211 Splicing factor hnRNP- 99.3 2.2E-11 4.8E-16 138.0 14.0 163 276-441 9-186 (510)
57 KOG0120 Splicing factor U2AF, 99.3 2.3E-11 4.9E-16 140.9 14.2 164 273-436 285-491 (500)
58 KOG1190 Polypyrimidine tract-b 99.3 4.6E-11 1E-15 132.5 15.5 164 275-438 148-374 (492)
59 KOG0125 Ataxin 2-binding prote 99.3 1.7E-11 3.7E-16 133.0 9.8 89 271-359 90-181 (376)
60 KOG0107 Alternative splicing f 99.2 2.3E-11 4.9E-16 122.5 7.4 77 362-438 10-86 (195)
61 KOG1190 Polypyrimidine tract-b 99.2 2E-10 4.3E-15 127.5 14.6 160 277-436 297-490 (492)
62 KOG0125 Ataxin 2-binding prote 99.2 5.8E-11 1.3E-15 128.9 8.9 99 335-437 73-174 (376)
63 KOG0107 Alternative splicing f 99.2 3.5E-11 7.6E-16 121.1 6.7 79 276-354 9-87 (195)
64 KOG0121 Nuclear cap-binding pr 99.2 4E-11 8.7E-16 115.2 6.0 78 273-350 32-114 (153)
65 PLN03120 nucleic acid binding 99.2 1E-10 2.2E-15 125.9 9.6 75 277-352 4-80 (260)
66 PLN03120 nucleic acid binding 99.1 1.4E-10 3E-15 124.9 9.8 74 362-436 4-79 (260)
67 KOG0149 Predicted RNA-binding 99.1 6.4E-11 1.4E-15 124.1 6.7 77 273-350 8-89 (247)
68 PF14259 RRM_6: RNA recognitio 99.1 1.4E-10 3.1E-15 100.2 7.8 66 280-345 1-70 (70)
69 KOG0114 Predicted RNA-binding 99.1 1.8E-10 3.9E-15 107.2 8.8 81 273-353 14-96 (124)
70 PF14259 RRM_6: RNA recognitio 99.1 3.2E-10 6.9E-15 98.0 8.4 66 365-430 1-70 (70)
71 smart00362 RRM_2 RNA recogniti 99.1 4.6E-10 9.9E-15 94.3 8.9 69 364-432 1-72 (72)
72 KOG1456 Heterogeneous nuclear 99.1 1E-09 2.2E-14 120.7 13.5 169 271-440 25-202 (494)
73 KOG0122 Translation initiation 99.1 3.6E-10 7.9E-15 118.9 8.4 80 273-352 185-269 (270)
74 smart00362 RRM_2 RNA recogniti 99.0 5.7E-10 1.2E-14 93.7 7.7 69 279-347 1-72 (72)
75 KOG0114 Predicted RNA-binding 99.0 9.6E-10 2.1E-14 102.4 9.6 81 361-441 17-99 (124)
76 PF13893 RRM_5: RNA recognitio 99.0 8.4E-10 1.8E-14 92.1 8.5 56 379-434 1-56 (56)
77 KOG0122 Translation initiation 99.0 4.2E-10 9.2E-15 118.4 8.1 77 361-437 188-269 (270)
78 PLN03213 repressor of silencin 99.0 6.6E-10 1.4E-14 125.3 9.5 86 360-445 8-96 (759)
79 PLN03213 repressor of silencin 99.0 5.4E-10 1.2E-14 126.0 8.5 120 274-395 7-136 (759)
80 KOG0113 U1 small nuclear ribon 99.0 7.1E-10 1.5E-14 119.4 8.0 79 273-351 97-180 (335)
81 KOG4207 Predicted splicing fac 99.0 4.2E-10 9.2E-15 115.7 5.6 78 273-350 9-91 (256)
82 KOG0121 Nuclear cap-binding pr 99.0 8.8E-10 1.9E-14 106.1 6.7 76 361-436 35-115 (153)
83 PLN03121 nucleic acid binding 99.0 1.6E-09 3.4E-14 115.3 9.2 74 276-350 4-79 (243)
84 PLN03121 nucleic acid binding 99.0 2.1E-09 4.5E-14 114.4 9.9 74 362-436 5-80 (243)
85 cd00590 RRM RRM (RNA recogniti 99.0 3.9E-09 8.5E-14 89.0 9.4 70 364-433 1-74 (74)
86 smart00360 RRM RNA recognition 99.0 1.6E-09 3.5E-14 90.5 6.9 66 282-347 1-71 (71)
87 KOG4207 Predicted splicing fac 98.9 8.4E-10 1.8E-14 113.6 6.0 76 362-437 13-93 (256)
88 KOG0111 Cyclophilin-type pepti 98.9 6.3E-10 1.4E-14 115.2 4.7 81 274-354 7-92 (298)
89 smart00360 RRM RNA recognition 98.9 3.6E-09 7.8E-14 88.4 7.5 66 367-432 1-71 (71)
90 COG0724 RNA-binding proteins ( 98.9 8.2E-09 1.8E-13 107.4 11.7 75 362-436 115-194 (306)
91 KOG4660 Protein Mei2, essentia 98.9 1.3E-09 2.8E-14 125.6 6.0 161 273-436 71-249 (549)
92 KOG0149 Predicted RNA-binding 98.9 1.8E-09 3.8E-14 113.5 6.5 79 359-438 9-92 (247)
93 cd00590 RRM RRM (RNA recogniti 98.9 5.1E-09 1.1E-13 88.4 7.9 70 279-348 1-74 (74)
94 KOG0126 Predicted RNA-binding 98.9 3.8E-10 8.3E-15 114.1 -0.2 77 274-350 32-113 (219)
95 PF13893 RRM_5: RNA recognitio 98.9 5.6E-09 1.2E-13 87.1 6.6 56 294-349 1-56 (56)
96 KOG0111 Cyclophilin-type pepti 98.8 1.7E-09 3.7E-14 112.1 4.1 81 360-440 8-93 (298)
97 KOG0108 mRNA cleavage and poly 98.8 3.3E-09 7.2E-14 122.4 6.9 78 278-355 19-101 (435)
98 KOG0105 Alternative splicing f 98.8 4.1E-09 8.8E-14 107.0 6.2 77 361-437 5-83 (241)
99 KOG0129 Predicted RNA-binding 98.8 6E-08 1.3E-12 111.3 15.9 142 273-417 255-431 (520)
100 KOG1456 Heterogeneous nuclear 98.8 1.1E-07 2.3E-12 105.1 16.8 167 271-437 114-363 (494)
101 KOG0113 U1 small nuclear ribon 98.8 1.5E-08 3.2E-13 109.4 9.6 89 350-438 89-182 (335)
102 KOG0130 RNA-binding protein RB 98.8 1.1E-08 2.3E-13 99.4 6.1 81 272-352 67-152 (170)
103 KOG0130 RNA-binding protein RB 98.7 1.7E-08 3.7E-13 98.0 6.5 82 358-439 68-154 (170)
104 KOG0126 Predicted RNA-binding 98.7 3.1E-09 6.7E-14 107.7 -0.6 76 361-436 34-114 (219)
105 smart00361 RRM_1 RNA recogniti 98.7 6.1E-08 1.3E-12 84.9 7.2 57 376-432 2-70 (70)
106 KOG0108 mRNA cleavage and poly 98.6 6.3E-08 1.4E-12 112.0 9.1 79 363-441 19-102 (435)
107 KOG0132 RNA polymerase II C-te 98.6 4.2E-08 9E-13 116.3 7.3 76 277-353 421-496 (894)
108 KOG0112 Large RNA-binding prot 98.6 2.4E-08 5.2E-13 120.0 4.4 159 273-438 368-532 (975)
109 KOG0146 RNA-binding protein ET 98.6 5.2E-08 1.1E-12 103.6 6.2 82 273-354 281-367 (371)
110 smart00361 RRM_1 RNA recogniti 98.6 9.4E-08 2E-12 83.8 6.2 57 290-346 1-69 (70)
111 KOG0120 Splicing factor U2AF, 98.6 1.1E-07 2.4E-12 110.7 8.4 166 273-440 171-372 (500)
112 KOG0106 Alternative splicing f 98.5 6.6E-08 1.4E-12 102.1 5.0 161 149-349 2-168 (216)
113 KOG4206 Spliceosomal protein s 98.5 1.8E-07 3.9E-12 98.2 7.6 77 363-439 10-92 (221)
114 KOG4210 Nuclear localization s 98.5 1.1E-07 2.3E-12 105.2 6.2 164 275-439 86-266 (285)
115 KOG0132 RNA polymerase II C-te 98.5 1.5E-07 3.2E-12 111.8 7.7 80 361-441 420-499 (894)
116 KOG0153 Predicted RNA-binding 98.5 2.6E-07 5.6E-12 101.8 8.2 79 357-436 223-302 (377)
117 KOG4454 RNA binding protein (R 98.5 4E-08 8.6E-13 102.3 1.5 130 275-418 7-144 (267)
118 KOG0226 RNA-binding proteins [ 98.5 1E-07 2.2E-12 101.2 4.2 161 278-438 97-271 (290)
119 KOG0415 Predicted peptidyl pro 98.4 1.9E-07 4.2E-12 102.5 5.5 80 273-352 235-319 (479)
120 KOG0153 Predicted RNA-binding 98.4 6E-07 1.3E-11 99.0 8.4 83 269-352 220-303 (377)
121 KOG0128 RNA-binding protein SA 98.4 5.4E-08 1.2E-12 116.7 -1.2 140 276-436 666-814 (881)
122 KOG4211 Splicing factor hnRNP- 98.3 6.2E-06 1.4E-10 94.6 14.8 153 275-429 101-350 (510)
123 KOG0415 Predicted peptidyl pro 98.3 8E-07 1.7E-11 97.8 6.0 79 360-438 237-320 (479)
124 KOG1365 RNA-binding protein Fu 98.3 2.2E-06 4.8E-11 95.2 8.9 161 277-438 161-363 (508)
125 KOG4208 Nucleolar RNA-binding 98.2 2.7E-06 5.9E-11 88.4 7.8 81 272-352 44-130 (214)
126 KOG4661 Hsp27-ERE-TATA-binding 98.0 8.2E-06 1.8E-10 94.1 6.4 75 362-436 405-484 (940)
127 KOG4661 Hsp27-ERE-TATA-binding 98.0 1.1E-05 2.3E-10 93.2 7.3 77 275-351 403-484 (940)
128 KOG4208 Nucleolar RNA-binding 98.0 1.9E-05 4E-10 82.3 8.2 79 359-437 46-130 (214)
129 KOG2193 IGF-II mRNA-binding pr 97.9 1.7E-06 3.8E-11 96.9 -0.7 148 278-435 2-155 (584)
130 KOG0151 Predicted splicing reg 97.9 2E-05 4.3E-10 93.4 7.6 84 268-351 165-256 (877)
131 KOG0533 RRM motif-containing p 97.9 3.1E-05 6.8E-10 83.6 7.8 81 273-353 79-163 (243)
132 KOG0151 Predicted splicing reg 97.9 2E-05 4.2E-10 93.4 6.5 78 359-436 171-256 (877)
133 KOG1457 RNA binding protein (c 97.8 4.9E-05 1.1E-09 79.9 8.1 80 361-440 33-121 (284)
134 KOG4454 RNA binding protein (R 97.8 1.4E-05 3.1E-10 83.7 4.1 77 361-437 8-87 (267)
135 KOG0116 RasGAP SH3 binding pro 97.8 1.8E-05 4E-10 91.4 5.5 74 277-351 288-366 (419)
136 KOG0116 RasGAP SH3 binding pro 97.7 5E-05 1.1E-09 87.9 6.2 75 363-438 289-368 (419)
137 KOG0533 RRM motif-containing p 97.7 0.00012 2.5E-09 79.3 8.4 78 361-438 82-163 (243)
138 KOG4307 RNA binding protein RB 97.7 8E-05 1.7E-09 88.1 7.3 166 271-437 305-514 (944)
139 KOG4210 Nuclear localization s 97.6 0.00018 3.9E-09 80.0 9.2 80 275-355 182-267 (285)
140 KOG1548 Transcription elongati 97.6 0.00012 2.6E-09 81.2 7.2 74 362-435 134-219 (382)
141 PF04059 RRM_2: RNA recognitio 97.6 0.00028 6E-09 66.4 8.1 73 278-350 2-85 (97)
142 KOG0226 RNA-binding proteins [ 97.5 8.8E-05 1.9E-09 79.4 4.7 77 274-350 187-268 (290)
143 KOG4209 Splicing factor RNPS1, 97.5 0.00012 2.6E-09 79.0 5.8 80 272-352 96-180 (231)
144 PF11608 Limkain-b1: Limkain b 97.5 0.00042 9E-09 63.3 8.2 69 363-436 3-76 (90)
145 KOG4209 Splicing factor RNPS1, 97.5 0.00013 2.8E-09 78.8 5.3 80 357-437 96-180 (231)
146 KOG4676 Splicing factor, argin 97.5 5.3E-05 1.1E-09 84.9 2.2 146 278-425 8-214 (479)
147 KOG1365 RNA-binding protein Fu 97.4 0.00043 9.4E-09 77.5 8.9 158 275-434 58-240 (508)
148 KOG0129 Predicted RNA-binding 97.4 0.00063 1.4E-08 79.0 10.3 160 147-333 258-432 (520)
149 PF08777 RRM_3: RNA binding mo 97.2 0.00041 9E-09 66.1 4.8 77 364-441 3-84 (105)
150 PF11608 Limkain-b1: Limkain b 97.1 0.0014 3E-08 60.0 6.9 69 278-351 3-76 (90)
151 KOG0128 RNA-binding protein SA 97.0 0.00086 1.9E-08 81.7 6.0 75 277-351 736-814 (881)
152 COG5175 MOT2 Transcriptional r 96.9 0.0012 2.6E-08 73.0 5.6 76 277-352 114-203 (480)
153 KOG1855 Predicted RNA-binding 96.8 0.0019 4.1E-08 73.7 6.2 86 348-433 217-320 (484)
154 COG5175 MOT2 Transcriptional r 96.8 0.0039 8.5E-08 69.1 8.3 79 361-439 113-205 (480)
155 PF08777 RRM_3: RNA binding mo 96.6 0.0055 1.2E-07 58.6 7.0 59 278-337 2-60 (105)
156 PF14605 Nup35_RRM_2: Nup53/35 96.4 0.007 1.5E-07 50.8 5.5 52 363-416 2-53 (53)
157 KOG1855 Predicted RNA-binding 96.4 0.0036 7.9E-08 71.4 4.9 77 271-348 225-320 (484)
158 PF05172 Nup35_RRM: Nup53/35/4 96.2 0.014 3.1E-07 55.4 7.3 74 361-436 5-91 (100)
159 KOG0115 RNA-binding protein p5 96.2 0.0072 1.6E-07 65.3 5.8 87 326-423 6-96 (275)
160 PF14605 Nup35_RRM_2: Nup53/35 96.2 0.0091 2E-07 50.1 5.2 52 278-331 2-53 (53)
161 KOG0112 Large RNA-binding prot 96.1 0.0064 1.4E-07 74.7 5.5 80 273-353 451-532 (975)
162 KOG1995 Conserved Zn-finger pr 96.1 0.0065 1.4E-07 68.3 4.8 81 273-353 62-155 (351)
163 KOG1995 Conserved Zn-finger pr 95.8 0.0076 1.6E-07 67.8 4.0 78 361-438 65-155 (351)
164 KOG2202 U2 snRNP splicing fact 95.7 0.0055 1.2E-07 66.2 2.2 62 377-438 83-149 (260)
165 KOG3152 TBP-binding protein, a 95.6 0.011 2.4E-07 63.8 3.8 68 361-428 73-157 (278)
166 KOG4307 RNA binding protein RB 95.5 0.025 5.3E-07 68.0 6.9 71 278-348 868-943 (944)
167 PF05172 Nup35_RRM: Nup53/35/4 95.3 0.033 7.2E-07 52.9 5.7 72 276-349 5-89 (100)
168 PF08952 DUF1866: Domain of un 95.2 0.067 1.4E-06 54.0 7.8 76 360-439 25-109 (146)
169 KOG1996 mRNA splicing factor [ 95.0 0.046 9.9E-07 60.1 6.2 61 376-436 300-366 (378)
170 KOG3152 TBP-binding protein, a 94.9 0.016 3.4E-07 62.7 2.6 68 276-343 73-157 (278)
171 KOG4849 mRNA cleavage factor I 94.3 0.035 7.5E-07 62.1 3.5 73 274-346 77-156 (498)
172 KOG2202 U2 snRNP splicing fact 94.0 0.024 5.3E-07 61.4 1.4 57 293-349 84-145 (260)
173 KOG2314 Translation initiation 93.7 0.065 1.4E-06 63.3 4.3 72 275-346 56-138 (698)
174 KOG4676 Splicing factor, argin 93.6 0.071 1.5E-06 60.6 4.2 71 363-434 8-86 (479)
175 KOG2314 Translation initiation 93.5 0.22 4.8E-06 59.0 8.1 76 360-435 56-142 (698)
176 KOG2193 IGF-II mRNA-binding pr 93.3 0.071 1.5E-06 61.0 3.7 76 363-441 2-80 (584)
177 KOG2416 Acinus (induces apopto 92.7 0.086 1.9E-06 62.7 3.4 79 271-350 438-520 (718)
178 PF15023 DUF4523: Protein of u 92.2 0.49 1.1E-05 47.6 7.4 75 359-436 83-161 (166)
179 KOG2416 Acinus (induces apopto 92.1 0.13 2.8E-06 61.2 3.8 78 360-438 442-523 (718)
180 PF08952 DUF1866: Domain of un 91.6 0.4 8.7E-06 48.5 6.2 74 274-351 24-106 (146)
181 PF15023 DUF4523: Protein of u 89.9 0.95 2.1E-05 45.7 6.9 76 272-350 81-160 (166)
182 KOG2591 c-Mpl binding protein, 89.6 0.57 1.2E-05 55.6 6.0 76 269-346 167-246 (684)
183 KOG1996 mRNA splicing factor [ 89.4 0.56 1.2E-05 51.9 5.4 60 291-350 300-365 (378)
184 PF08675 RNA_bind: RNA binding 89.1 1.2 2.6E-05 41.1 6.5 55 278-336 10-64 (87)
185 KOG2068 MOT2 transcription fac 88.9 0.23 5E-06 55.9 2.1 95 361-456 76-181 (327)
186 KOG4574 RNA-binding protein (c 88.5 0.77 1.7E-05 56.9 6.2 75 363-438 299-375 (1007)
187 KOG4285 Mitotic phosphoprotein 88.4 1.6 3.5E-05 48.7 8.1 75 360-437 195-270 (350)
188 KOG4849 mRNA cleavage factor I 88.4 0.61 1.3E-05 52.6 4.9 75 362-436 80-161 (498)
189 KOG2068 MOT2 transcription fac 88.1 0.28 6E-06 55.3 2.1 77 277-353 77-164 (327)
190 KOG2591 c-Mpl binding protein, 88.0 1 2.2E-05 53.7 6.5 99 323-433 146-248 (684)
191 PF03467 Smg4_UPF3: Smg-4/UPF3 87.4 0.8 1.7E-05 47.8 4.8 67 275-341 5-82 (176)
192 PF08675 RNA_bind: RNA binding 85.8 3.1 6.8E-05 38.5 7.1 56 362-421 9-64 (87)
193 PF10309 DUF2414: Protein of u 85.4 3 6.5E-05 36.5 6.5 54 277-334 5-62 (62)
194 PF03467 Smg4_UPF3: Smg-4/UPF3 85.1 0.97 2.1E-05 47.2 4.1 75 361-435 6-96 (176)
195 PF04847 Calcipressin: Calcipr 84.2 1.9 4.1E-05 45.4 5.8 63 375-438 8-72 (184)
196 KOG2135 Proteins containing th 83.8 0.66 1.4E-05 54.3 2.3 74 363-438 373-447 (526)
197 PF10309 DUF2414: Protein of u 81.0 5.7 0.00012 34.8 6.5 55 362-419 5-62 (62)
198 KOG4285 Mitotic phosphoprotein 79.4 3.8 8.3E-05 45.9 6.1 70 277-349 197-267 (350)
199 PF04847 Calcipressin: Calcipr 78.2 2.4 5.3E-05 44.6 4.1 62 290-352 8-71 (184)
200 KOG2253 U1 snRNP complex, subu 77.9 2.1 4.6E-05 52.1 3.9 72 358-433 36-107 (668)
201 PF07576 BRAP2: BRCA1-associat 76.6 17 0.00037 35.3 9.0 62 364-425 15-80 (110)
202 KOG0115 RNA-binding protein p5 75.9 2.8 6.2E-05 45.9 3.9 70 278-347 32-109 (275)
203 PF07292 NID: Nmi/IFP 35 domai 73.7 3.4 7.5E-05 38.6 3.3 66 317-383 1-73 (88)
204 PF03880 DbpA: DbpA RNA bindin 72.7 7 0.00015 34.9 5.0 59 372-434 11-74 (74)
205 KOG2135 Proteins containing th 72.4 2 4.3E-05 50.5 1.7 78 274-353 369-447 (526)
206 PF14111 DUF4283: Domain of un 71.2 5.9 0.00013 39.3 4.7 103 291-397 35-140 (153)
207 KOG2253 U1 snRNP complex, subu 63.0 5.3 0.00012 48.8 2.8 72 273-348 36-107 (668)
208 KOG4574 RNA-binding protein (c 62.5 4.2 9E-05 50.9 1.8 74 279-353 300-375 (1007)
209 PF07576 BRAP2: BRCA1-associat 61.3 51 0.0011 32.1 8.7 64 278-341 13-81 (110)
210 PF11767 SET_assoc: Histone ly 61.2 28 0.00062 30.9 6.3 55 373-431 11-65 (66)
211 PF10567 Nab6_mRNP_bdg: RNA-re 60.5 1.2E+02 0.0025 34.6 12.2 145 275-420 13-212 (309)
212 PF11767 SET_assoc: Histone ly 57.9 25 0.00055 31.2 5.4 55 288-346 11-65 (66)
213 KOG0804 Cytoplasmic Zn-finger 53.3 31 0.00068 40.8 6.7 64 362-425 74-141 (493)
214 PF03880 DbpA: DbpA RNA bindin 45.7 56 0.0012 29.1 5.8 58 288-349 12-74 (74)
215 KOG2318 Uncharacterized conser 44.4 67 0.0014 39.3 7.7 78 272-349 169-305 (650)
216 KOG2891 Surface glycoprotein [ 38.9 25 0.00055 39.0 3.0 107 318-424 79-247 (445)
217 KOG4019 Calcineurin-mediated s 34.6 48 0.001 35.1 4.0 75 363-438 11-91 (193)
218 KOG2318 Uncharacterized conser 34.4 1.2E+02 0.0027 37.2 7.8 73 361-433 173-304 (650)
219 KOG4019 Calcineurin-mediated s 32.8 33 0.00071 36.3 2.5 75 277-352 10-90 (193)
220 PRK14548 50S ribosomal protein 31.2 1E+02 0.0022 28.7 5.2 55 364-418 22-80 (84)
221 KOG4483 Uncharacterized conser 29.3 1.2E+02 0.0027 35.6 6.5 55 361-417 390-445 (528)
222 KOG0804 Cytoplasmic Zn-finger 28.6 1.8E+02 0.0039 34.8 7.7 64 277-340 74-141 (493)
223 TIGR03636 L23_arch archaeal ri 27.3 1.4E+02 0.003 27.4 5.3 54 364-417 15-72 (77)
No 1
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.8e-60 Score=536.25 Aligned_cols=500 Identities=48% Similarity=0.671 Sum_probs=348.4
Q ss_pred hhhHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCc
Q 002123 224 EDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD 303 (964)
Q Consensus 224 eei~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~ 303 (964)
++++.+...+||+++++....+..... ....+.....+++..+ +++ || .+|..+|++|+
T Consensus 2 ~d~~lf~~~G~~el~~~~~~~~~~~~~--------~~n~~~~~~~~~P~~~--s~~-~~---------~~l~a~f~~~~- 60 (549)
T KOG4660|consen 2 EDCDLFSSGGGMELDADSFDNLSVRNS--------DRNSAGFVFPEHPPGE--SRT-FV---------SELSALFEPFN- 60 (549)
T ss_pred CccccccCCCCCCcccccccchhhccc--------ccCCCccccCCCCCCC--CCC-Ch---------hhHHhhhhccC-
Confidence 345789999999999665432222111 1233334556666666 666 87 78889999881
Q ss_pred EEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCCCCCccCCcceEEEeccCCCCcHHHHHHHh
Q 002123 304 IRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIF 383 (964)
Q Consensus 304 I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelF 383 (964)
+.+ +++.+.+++.++++|+|.|||.+|++++|+.+|
T Consensus 61 ---------------------------------~p~-----------~~~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f 96 (549)
T KOG4660|consen 61 ---------------------------------KPL-----------RPDNPSEKDMNQGTLVVFNLPRSVSNDTLLRIF 96 (549)
T ss_pred ---------------------------------CCC-----------CcCCCCcccCccceEEEEecCCcCCHHHHHHHH
Confidence 111 115566778899999999999999999999999
Q ss_pred hccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCchhhhcchhhhhcccCcccCCCCCCC
Q 002123 384 GIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLCQIPFDDL 463 (964)
Q Consensus 384 s~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~r~~~qq~eq~q~E~nL~kNLp~s~ 463 (964)
+.||+|+.|+..+..++..||+|+|+.+|+.|+++|++..|.|+.|+ ++...++.+.-......-..+...+..++
T Consensus 97 ~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k----~~~~~~~~~~~~~~~~~~~~~~~p~a~s~ 172 (549)
T KOG4660|consen 97 GAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK----RPGGARRAMGLQSGTSFLNHFGSPLANSP 172 (549)
T ss_pred HhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc----CCCcccccchhcccchhhhhccchhhcCC
Confidence 99999999999999999999999999999999999999999999999 55555542211111100000002222222
Q ss_pred ChhhcccCcceEEEecCCCCcceeecCCCCCcccccccccCCCCCCCCCCcCccccCCCCCCcCCCCccccccccCCC-C
Q 002123 464 SSGQMVSSGVITSTCMDNGSIQVLHSATRSPAIALTESHQTSSVPNGLPSLARVGSIGKQFGHYEPNLSLDEMKFGNQ-H 542 (964)
Q Consensus 464 tee~Ls~fG~I~s~~~enG~~rGf~s~~~~p~~~~~~~~~s~~~p~~~~~p~~~~s~~~~~~~~~~~~~l~~~~~~~~-~ 542 (964)
++. ..|+---.+..|+... .+.++..+++.-.-+ + .
T Consensus 173 pgg----------------~~~~~~~g~l~P~~s~--------------------------~~~~~~~~~~~~~~~-~~~ 209 (549)
T KOG4660|consen 173 PGG----------------WPRGQLFGMLSPTRSS--------------------------ILLEHISSVDGSSPG-RET 209 (549)
T ss_pred CCC----------------CcCCcceeeeccchhh--------------------------hhhhcchhccCcccc-ccc
Confidence 222 2222100001121111 111111111111011 2 2
Q ss_pred CCcCCCCCccccCCcCCCCCCCCCCcccccccccCCccccCCCCccccccCCCCCCCCCCCCccCCCCCCCccCCCCCcc
Q 002123 543 PSFHPHSLPEYHDSLANGLPYNSPSTIADIASSVGTKIKDGLDSRHIRGVSSNGHLMEPTGGVFGSPRNGSYSLHGNPYV 622 (964)
Q Consensus 543 ~~~~~hS~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~ 622 (964)
|-++. .....++.+.+|.. +.. .+ |..+....+++ +++|+
T Consensus 210 ~~~~h----q~~~~~~~~~s~a~----~~~-------------------~~--G~~~s~~~~v~--------t~S~~--- 249 (549)
T KOG4660|consen 210 PLLNH----QRFVEFADNRSYAF----SEP-------------------RG--GFLISNSSGVI--------TFSGP--- 249 (549)
T ss_pred cchhh----hhhhhhccccchhh----ccc-------------------CC--ceecCCCCceE--------EecCC---
Confidence 33321 22333444444421 111 11 44332222333 44443
Q ss_pred CCCCCCCCCCCCCCCccCCCCCcCCCCcCCCCCCCCCCCCCCcccccCCCC-CCCCcCCCCCCCCCccccccccCCCCCC
Q 002123 623 WNNSNSHQQHPSSPMVWPNSPSFLNGLHANRVAHMPGFPRVPPLMLNATSP-AHHHIGSAPAVNPSLWDRQHAYAGESPE 701 (964)
Q Consensus 623 w~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~gsap~~~~~~~~~~~~~~~~~~~ 701 (964)
.++| |++.+++ +.| +.+.. .|||||+||+
T Consensus 250 -------------~g~~-------n~~~~~r--~~~----------~~~~~~~~~hi~~~Ps------------------ 279 (549)
T KOG4660|consen 250 -------------GGVW-------NPFPSRR--QRQ----------NSSSSHYEHHIGSAPS------------------ 279 (549)
T ss_pred -------------Cccc-------CCccccc--ccc----------ccCcccccCccCCCcc------------------
Confidence 2455 4444433 111 22222 3999999998
Q ss_pred CcccccCCCCCCCCCCCCCCcccccc--ccccccCCCCCccCCC-CCCCCCCcccccCCCCCCCCCcccccCccchHHhh
Q 002123 702 TSNFHLGSLGSGGFLGRSPSHHVDIA--SQNILSHVGGNCMDMT-KNVGMRSPQQICHLFPGRNPMMSMQTSFDSSNERM 778 (964)
Q Consensus 702 ~~~~~~~~~g~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~f~g~~~~~~~~~~~~~~~~~~ 778 (964)
..++.+-++++|.+..+++.+..+ ....+.+..|+++|.. +++++.+.++....|.++.-+. ...|...+..
T Consensus 280 --~~~l~~~~~~~f~~~s~~~~~~~~~~~n~g~~~~t~~~~e~~s~n~~~e~~~rv~~~f~~~~~~~---~~~~~~~~~~ 354 (549)
T KOG4660|consen 280 --MHHLLSRISVGFNGGSGALEMNSNGQANQGFLTKTGNVTEFNSKNVGMESSPRVPKNFEGRRSYT---SQNDYPVELI 354 (549)
T ss_pred --cccccccCccccCCCCCCccccccccCCCCccccCcccccccCCCccccccCCCCcccccccccc---cccccccccc
Confidence 335556777788777676666554 3456778899999988 9999999999999999988543 3455555544
Q ss_pred hccccccCCCCCCcccccccccchhhhhcCCCCceeEEeecCCCCCCHHHHHHHHhhhCCCcceEEecccchh-------
Q 002123 779 RNLSYRRNESNSNHADKKQYELDIDRILRGDDSRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFK------- 851 (964)
Q Consensus 779 r~~~~~~~~~~~~~~~~~~~~~d~~~i~~g~d~rTTvMirNIPnk~t~~~L~~~id~~~~~~yDF~YlpiDf~------- 851 (964)
+++..||.+.+..+.+++++++|+.+|.+|+|.|||+||||||||||++||++. ||.++++||||||||||+
T Consensus 355 ~~~~~~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~-d~~~~gtYDFlYLPiDF~nkcNvGY 433 (549)
T KOG4660|consen 355 LNYRDRRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAA-DEKNKGTYDFLYLPIDFKNKCNVGY 433 (549)
T ss_pred cccccchhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhh-hccccCccceEEeccccccccccce
Confidence 445558988888888899999999999999999999999999999999999999 999999999999999997
Q ss_pred ----------------hhcCCcccCCCCccEEEEEeccccCHHHHHHHhccCcCCCCCCCccceEEecCCCCCCCCCCCC
Q 002123 852 ----------------AFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFP 915 (964)
Q Consensus 852 ----------------~f~g~~w~~~~s~Kv~~v~~A~iQG~~ali~hf~~s~v~~~~~~~rP~~f~~~g~~~g~~~pfp 915 (964)
+|+|++|++|+|+|||+|+|||||||++|++|||||++|||++.|+|++|+. |..|.++++|
T Consensus 434 AFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk~~Li~hFqnS~lm~E~e~y~Pvvf~p--p~dg~~~~~p 511 (549)
T KOG4660|consen 434 AFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGKEALIEHFQNSSLMCEDEAYRPVVFSP--PEDGREEPEP 511 (549)
T ss_pred eEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhchHHHHHHhhcccccccchhcCceEecC--cccccccCcc
Confidence 8999999999999999999999999999999999999999999999999986 7888899999
Q ss_pred CCCCcccCCCCCCcCCcc
Q 002123 916 MGTNIRSRLGKPRINGNE 933 (964)
Q Consensus 916 ~~~~~~~~~~~~r~~~~~ 933 (964)
...+++.+.+..+.....
T Consensus 512 ~~~~~~a~~~~s~~~~~~ 529 (549)
T KOG4660|consen 512 VKLNQDAGAGHSTNASLK 529 (549)
T ss_pred ccccccCCCCcccchhhh
Confidence 999999877776665544
No 2
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=4.2e-37 Score=364.93 Aligned_cols=276 Identities=22% Similarity=0.348 Sum_probs=233.4
Q ss_pred cCCCCCeeeecccCCCCCccccCCCccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCCh-hh
Q 002123 125 NSLSGNRSGINGIQSESSLFSSSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDE-DD 202 (964)
Q Consensus 125 ~~~~g~~i~im~s~rd~sl~sSsl~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpdE-dD 202 (964)
..++|++|+|+|+++|+++++++..+|||+||+. +|++.|++. | +.+|+|+... ..
T Consensus 65 ~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~--------------F--------~~~G~i~~~~i~~ 122 (562)
T TIGR01628 65 KRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDT--------------F--------SKFGNILSCKVAT 122 (562)
T ss_pred CEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHH--------------H--------HhcCCcceeEeee
Confidence 4589999999999999999999999999999997 999999999 8 6778877721 00
Q ss_pred hhccCCCCeeeeecCCChhhhhhhHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEE
Q 002123 203 LFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFV 282 (964)
Q Consensus 203 L~sG~SkGfGFV~f~~t~edaeei~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFV 282 (964)
...|.++|||||+ |++.++|+ +|+..++|+.++ +..+.++.......+ + .......++|||
T Consensus 123 ~~~g~skg~afV~-F~~~e~A~--~Ai~~lng~~~~-~~~i~v~~~~~~~~~--------------~-~~~~~~~~~l~V 183 (562)
T TIGR01628 123 DENGKSRGYGFVH-FEKEESAK--AAIQKVNGMLLN-DKEVYVGRFIKKHER--------------E-AAPLKKFTNLYV 183 (562)
T ss_pred cCCCCcccEEEEE-ECCHHHHH--HHHHHhcccEec-CceEEEecccccccc--------------c-cccccCCCeEEE
Confidence 1267899999999 55788878 899999999998 555555443321110 0 113345689999
Q ss_pred ecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccc----cccceeeecCCCCC
Q 002123 283 RNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLR----RRKLDIHYSIPKDN 354 (964)
Q Consensus 283 gNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~----Gr~L~V~~A~~k~~ 354 (964)
+|||.++|+++|+++|++||+|.++++ +++++|||||+|.+.++|.+|++.|+|+.+. |+.|.|.++..+.+
T Consensus 184 ~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~e 263 (562)
T TIGR01628 184 KNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAE 263 (562)
T ss_pred eCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhh
Confidence 999999999999999999999999976 5778999999999999999999999999999 99999999877655
Q ss_pred CCC--------------ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHH
Q 002123 355 PSE--------------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETAL 416 (964)
Q Consensus 355 ~~~--------------~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL 416 (964)
+.. ......+|||+||+..+++++|+++|++||.|++|+++.+ ++|||||+|.+.++|.+|+
T Consensus 264 r~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~ 343 (562)
T TIGR01628 264 REAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAV 343 (562)
T ss_pred hHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHH
Confidence 411 1234568999999999999999999999999999998653 6899999999999999999
Q ss_pred HHhCCceeCCceEEEEeccCCchhh
Q 002123 417 RTLNRSDVAGKQIKLEASRPGGARR 441 (964)
Q Consensus 417 ~~LNG~~I~Gr~LkV~~A~~k~~r~ 441 (964)
+.|||..++|++|+|.+|.+++.++
T Consensus 344 ~~~~g~~~~gk~l~V~~a~~k~~~~ 368 (562)
T TIGR01628 344 TEMHGRMLGGKPLYVALAQRKEQRR 368 (562)
T ss_pred HHhcCCeeCCceeEEEeccCcHHHH
Confidence 9999999999999999999988776
No 3
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2e-34 Score=342.13 Aligned_cols=294 Identities=19% Similarity=0.285 Sum_probs=235.9
Q ss_pred ccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCC--ChhhhhccCCCCeeeeecCCChhhhhhh
Q 002123 150 DIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP--DEDDLFSGVTDDMGHNFQANTVDDLEDF 226 (964)
Q Consensus 150 nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILp--dEdDL~sG~SkGfGFV~f~~t~edaeei 226 (964)
.|||+||+. ++++.|++. | +.+|.|.. -..|..++.++|||||. |.+.++|+
T Consensus 2 sl~VgnLp~~vte~~L~~~--------------F--------~~~G~v~~v~v~~d~~t~~s~G~afV~-F~~~~~A~-- 56 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDL--------------F--------KPFGPVLSVRVCRDSVTRRSLGYGYVN-FQNPADAE-- 56 (562)
T ss_pred eEEEeCCCCCCCHHHHHHH--------------H--------HhcCCEEEEEEEecCCCCCcceEEEEE-ECCHHHHH--
Confidence 599999997 888889988 8 55565554 12334468899999999 55888878
Q ss_pred HHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEE
Q 002123 227 DLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT 306 (964)
Q Consensus 227 ~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~s 306 (964)
+|+..+++..+.|. .+.+... .. .........++|||+|||.++++++|+++|++||.|.+
T Consensus 57 ~Al~~ln~~~i~gk-~i~i~~s----------------~~--~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~ 117 (562)
T TIGR01628 57 RALETMNFKRLGGK-PIRIMWS----------------QR--DPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILS 117 (562)
T ss_pred HHHHHhCCCEECCe-eEEeecc----------------cc--cccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcce
Confidence 89999999888743 3222110 00 00112223568999999999999999999999999999
Q ss_pred EEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCCCC-CccCCcceEEEeccCCCCcHHHHHH
Q 002123 307 IYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPS-EKDANQGTLVVFNLDSSVSTEELHQ 381 (964)
Q Consensus 307 vki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~~-~~~~~~~tLfV~NLp~~vTeedLre 381 (964)
|++ +++++|||||+|.+.++|++|++.++|..+.++.|.|.....+.++. ......++|||+||+.++|+++|++
T Consensus 118 ~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~ 197 (562)
T TIGR01628 118 CKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRE 197 (562)
T ss_pred eEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHH
Confidence 986 57799999999999999999999999999999999998877665552 2344567899999999999999999
Q ss_pred HhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeC----CceEEEEeccCCchhh--hcchhhhhc-
Q 002123 382 IFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVA----GKQIKLEASRPGGARR--FMVQSEQEQ- 450 (964)
Q Consensus 382 lFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~----Gr~LkV~~A~~k~~r~--~~qq~eq~q- 450 (964)
+|++||.|.++++..+ ++|||||+|.+.++|.+|++.|+|..|. |+.|.|.+++.+.++. +....++..
T Consensus 198 ~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~ 277 (562)
T TIGR01628 198 LFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQ 277 (562)
T ss_pred HHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhh
Confidence 9999999999988653 5789999999999999999999999999 9999999999887663 222222222
Q ss_pred ------ccCccc-CCCCCCCChhhc----ccCcceEEE---ecCCCCccee
Q 002123 451 ------DDLNLC-QIPFDDLSSGQM----VSSGVITST---CMDNGSIQVL 487 (964)
Q Consensus 451 ------~E~nL~-kNLp~s~tee~L----s~fG~I~s~---~~enG~~rGf 487 (964)
...++| +||+.++++++| ..||.|.++ ....|.++||
T Consensus 278 ~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~ 328 (562)
T TIGR01628 278 ERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGF 328 (562)
T ss_pred hhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCe
Confidence 123577 999999999999 889999998 4467888887
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.8e-33 Score=313.96 Aligned_cols=246 Identities=17% Similarity=0.280 Sum_probs=198.1
Q ss_pred CCccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCC--hhhhhccCCCCeeeeecCCChhhhh
Q 002123 148 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSGVTDDMGHNFQANTVDDLE 224 (964)
Q Consensus 148 l~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpd--EdDL~sG~SkGfGFV~f~~t~edae 224 (964)
-.+|||+||+. ++.+.|.+. | ..+|.|... ..|..+|.++|||||+| .+.++|+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~--------------F--------~~~G~i~~v~i~~d~~~g~s~g~afV~f-~~~~~A~ 59 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSL--------------F--------TSIGEIESCKLVRDKVTGQSLGYGFVNY-VRPEDAE 59 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHH--------------H--------HccCCEEEEEEEEcCCCCccceEEEEEE-CcHHHHH
Confidence 35899999987 899899988 8 666666551 12233688999999995 5778878
Q ss_pred hhHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcE
Q 002123 225 DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDI 304 (964)
Q Consensus 225 ei~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I 304 (964)
+|+..++|..|.|. .+.+..... .......++|||+|||.++++++|+++|++||.|
T Consensus 60 --~Ai~~l~g~~l~g~-~i~v~~a~~--------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i 116 (352)
T TIGR01661 60 --KAVNSLNGLRLQNK-TIKVSYARP--------------------SSDSIKGANLYVSGLPKTMTQHELESIFSPFGQI 116 (352)
T ss_pred --HHHhhcccEEECCe-eEEEEeecc--------------------cccccccceEEECCccccCCHHHHHHHHhccCCE
Confidence 89999999999833 333321110 0112345789999999999999999999999999
Q ss_pred EEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccc--ccceeeecCCCCCCCC----------------c---
Q 002123 305 RTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIPKDNPSE----------------K--- 358 (964)
Q Consensus 305 ~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~G--r~L~V~~A~~k~~~~~----------------~--- 358 (964)
..+++ ++.++|||||+|.+.++|++|++.|+|..+.| ++|.|.++........ .
T Consensus 117 ~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (352)
T TIGR01661 117 ITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPL 196 (352)
T ss_pred EEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCc
Confidence 98875 46789999999999999999999999999887 5688888754321000 0
Q ss_pred ---------------------------------------------------------------------cCCcceEEEec
Q 002123 359 ---------------------------------------------------------------------DANQGTLVVFN 369 (964)
Q Consensus 359 ---------------------------------------------------------------------~~~~~tLfV~N 369 (964)
.....+|||+|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~N 276 (352)
T TIGR01661 197 STILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYN 276 (352)
T ss_pred cccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeC
Confidence 00112599999
Q ss_pred cCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCch
Q 002123 370 LDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (964)
Q Consensus 370 Lp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~ 439 (964)
||.++++++|+++|++||.|++|+|+.+ ++|||||+|.+.++|.+|++.|||..|+||.|+|.|+..+..
T Consensus 277 L~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 277 LSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999999998754 699999999999999999999999999999999999998764
No 5
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=2e-32 Score=321.81 Aligned_cols=337 Identities=17% Similarity=0.164 Sum_probs=244.7
Q ss_pred CccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCC--hhhhhccCCCCeeeeecCCChhhhhh
Q 002123 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSGVTDDMGHNFQANTVDDLED 225 (964)
Q Consensus 149 ~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpd--EdDL~sG~SkGfGFV~f~~t~edaee 225 (964)
.+|||+||++ ++++.|.+. | ..+|.|... ..| .++.++|||||+ |++.|+|+
T Consensus 59 ~~lFVgnLp~~~tEd~L~~~--------------F--------~~~G~I~~vrl~~D-~sG~sRGfaFV~-F~~~e~A~- 113 (578)
T TIGR01648 59 CEVFVGKIPRDLYEDELVPL--------------F--------EKAGPIYELRLMMD-FSGQNRGYAFVT-FCGKEEAK- 113 (578)
T ss_pred CEEEeCCCCCCCCHHHHHHH--------------H--------HhhCCEEEEEEEEC-CCCCccceEEEE-eCCHHHHH-
Confidence 5899999997 899899888 8 445544441 122 478999999999 55888888
Q ss_pred hHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCc-E
Q 002123 226 FDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD-I 304 (964)
Q Consensus 226 i~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~-I 304 (964)
+|+..++|.++...+.+.+ . .....++|||+|||.++|+++|.+.|++++. +
T Consensus 114 -~Ai~~lng~~i~~Gr~l~V----------------~----------~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egv 166 (578)
T TIGR01648 114 -EAVKLLNNYEIRPGRLLGV----------------C----------ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGV 166 (578)
T ss_pred -HHHHHcCCCeecCCccccc----------------c----------ccccCceeEeecCCcchhhHHHHHHhhcccCCc
Confidence 8999999998863322111 0 1123689999999999999999999999964 3
Q ss_pred EEEEe------cCCccceEEEEeCCHHHHHHHHHHccC--CccccccceeeecCCCCCCCCcc-CCcceEEEeccCCCCc
Q 002123 305 RTIYT------ACKHRGFVMISYYDIRAARNAMKALQN--KPLRRRKLDIHYSIPKDNPSEKD-ANQGTLVVFNLDSSVS 375 (964)
Q Consensus 305 ~svki------tgksRGfaFV~F~d~esA~kAl~~Lng--~~i~Gr~L~V~~A~~k~~~~~~~-~~~~tLfV~NLp~~vT 375 (964)
+++.+ .++++|||||+|.+.++|.+|++.|+. ..++|+.|.|.|+.++....+.. ...++|||+||+.+++
T Consensus 167 v~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~t 246 (578)
T TIGR01648 167 VDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTT 246 (578)
T ss_pred eEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCC
Confidence 33322 357899999999999999999998864 35889999999998876543322 3457899999999999
Q ss_pred HHHHHHHhhcc--CceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCchhh------------
Q 002123 376 TEELHQIFGIY--GEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR------------ 441 (964)
Q Consensus 376 eedLrelFs~f--G~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~r~------------ 441 (964)
+++|+++|++| |+|++|+++ ++||||+|.+.++|++|++.|||..|+|+.|+|.||+++....
T Consensus 247 ee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~ 323 (578)
T TIGR01648 247 EEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRG 323 (578)
T ss_pred HHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcccccccccccCCCc
Confidence 99999999999 999999875 5799999999999999999999999999999999999865431
Q ss_pred hcchhhhh-----c--ccCccc-CCCCCCCChhhc-ccC---cceEEEecCCC-----CcceeecCC----------CCC
Q 002123 442 FMVQSEQE-----Q--DDLNLC-QIPFDDLSSGQM-VSS---GVITSTCMDNG-----SIQVLHSAT----------RSP 494 (964)
Q Consensus 442 ~~qq~eq~-----q--~E~nL~-kNLp~s~tee~L-s~f---G~I~s~~~enG-----~~rGf~s~~----------~~p 494 (964)
...+.+.. . ....++ .|++.+.+++.+ ..| |.|..-..-.+ ..||+.... -.|
T Consensus 324 ~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~~rgrg~~~~r~~ggrg~~~~g~~~~~~~~~~~~~ 403 (578)
T TIGR01648 324 KERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIRGRGRGGAPSRAAGGRGYPPYGYEAYYGDYYGYHD 403 (578)
T ss_pred ccccccccccCcccCccccccccccccccccccchhhccccCccccCCCCCCCCCCCCCCCCCCCCCcccccCccccccc
Confidence 00000000 0 112233 778888777766 333 43322100000 011211100 011
Q ss_pred cccccccccCCCCCCCCCCcCccccCCCCCCcCCCCccccccccCCC
Q 002123 495 AIALTESHQTSSVPNGLPSLARVGSIGKQFGHYEPNLSLDEMKFGNQ 541 (964)
Q Consensus 495 ~~~~~~~~~s~~~p~~~~~p~~~~s~~~~~~~~~~~~~l~~~~~~~~ 541 (964)
-..--+.+++..+|++.++|+....+ |..++...++.++++|.+|+
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 449 (578)
T TIGR01648 404 YRGKYEDKYYGYDPGMELTPMNPVRG-KPGGRGGRPAIPPPRGRKNG 449 (578)
T ss_pred CCCCcCCcCcCCCCcccccccccccc-cccccCCCCccchhhccccC
Confidence 11222455778899999999998777 88899999999999988765
No 6
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.98 E-value=3e-33 Score=259.00 Aligned_cols=74 Identities=69% Similarity=1.225 Sum_probs=72.7
Q ss_pred ceeEEeecCCCCCCHHHHHHHHhhhCCCcceEEecccchh-----------------------hhcCCcccCCCCccEEE
Q 002123 812 RTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFK-----------------------AFNGKKWEKFNSEKVAS 868 (964)
Q Consensus 812 rTTvMirNIPnk~t~~~L~~~id~~~~~~yDF~YlpiDf~-----------------------~f~g~~w~~~~s~Kv~~ 868 (964)
|||||||||||||||+||+++||+.|+|+||||||||||+ +|+|++|+.++|.|||+
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 8999999999999999999999999999999999999997 78999999999999999
Q ss_pred EEeccccCHHHHHHHhc
Q 002123 869 LAYARIQGKAALIAHFQ 885 (964)
Q Consensus 869 v~~A~iQG~~ali~hf~ 885 (964)
|+||||||++|||+|||
T Consensus 81 i~yAriQG~~alv~~f~ 97 (97)
T PF04059_consen 81 ISYARIQGKDALVEHFR 97 (97)
T ss_pred EehhHhhCHHHHHHhhC
Confidence 99999999999999996
No 7
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.98 E-value=1.3e-30 Score=287.73 Aligned_cols=240 Identities=20% Similarity=0.336 Sum_probs=196.8
Q ss_pred CCccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCC--ChhhhhccCCCCeeeeecCCChhhhh
Q 002123 148 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP--DEDDLFSGVTDDMGHNFQANTVDDLE 224 (964)
Q Consensus 148 l~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILp--dEdDL~sG~SkGfGFV~f~~t~edae 224 (964)
..+|||++|+. +-+++|... | ..+|.|.- ---|-.+|-+|||+||+|. +.|+|.
T Consensus 83 G~EVfvGkIPrD~~EdeLvpl--------------f--------EkiG~I~elRLMmD~~sG~nRGYAFVtf~-~Ke~Aq 139 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPL--------------F--------EKIGKIYELRLMMDPFSGDNRGYAFVTFC-TKEEAQ 139 (506)
T ss_pred CceEEecCCCccccchhhHHH--------------H--------HhccceeeEEEeecccCCCCcceEEEEee-cHHHHH
Confidence 45799999986 667677766 7 44444443 1112348999999999955 666667
Q ss_pred hhHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCc-
Q 002123 225 DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD- 303 (964)
Q Consensus 225 ei~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~- 303 (964)
.||+..|+.|+...+.+ +.+ -...+++|||+|||.++++++|++.|++.++
T Consensus 140 --~Aik~lnn~Eir~GK~i--gvc------------------------~Svan~RLFiG~IPK~k~keeIlee~~kVteG 191 (506)
T KOG0117|consen 140 --EAIKELNNYEIRPGKLL--GVC------------------------VSVANCRLFIGNIPKTKKKEEILEEMKKVTEG 191 (506)
T ss_pred --HHHHHhhCccccCCCEe--EEE------------------------EeeecceeEeccCCccccHHHHHHHHHhhCCC
Confidence 79999999888733321 111 1234699999999999999999999999986
Q ss_pred EEEEEe------cCCccceEEEEeCCHHHHHHHHHHc-cC-CccccccceeeecCCCCCCCCccC-CcceEEEeccCCCC
Q 002123 304 IRTIYT------ACKHRGFVMISYYDIRAARNAMKAL-QN-KPLRRRKLDIHYSIPKDNPSEKDA-NQGTLVVFNLDSSV 374 (964)
Q Consensus 304 I~svki------tgksRGfaFV~F~d~esA~kAl~~L-ng-~~i~Gr~L~V~~A~~k~~~~~~~~-~~~tLfV~NLp~~v 374 (964)
|++|.+ ..|+||||||+|++..+|..|-+.| ++ ..++|..+.|.||.++.+..+... ....|||+||+.++
T Consensus 192 VvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~t 271 (506)
T KOG0117|consen 192 VVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMEST 271 (506)
T ss_pred eeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhh
Confidence 556644 5789999999999999999999876 44 368999999999999988765533 45689999999999
Q ss_pred cHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCchhh
Q 002123 375 STEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR 441 (964)
Q Consensus 375 TeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~r~ 441 (964)
|+|.|+++|++||.|++|+.+ +.||||.|.+.++|.+||+.|||++|+|..|.|.+|+|..+++
T Consensus 272 TeE~lk~~F~~~G~veRVkk~---rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 272 TEETLKKLFNEFGKVERVKKP---RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred hHHHHHHHHHhccceEEeecc---cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 999999999999999999966 5599999999999999999999999999999999999987766
No 8
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.8e-32 Score=307.57 Aligned_cols=274 Identities=22% Similarity=0.349 Sum_probs=232.9
Q ss_pred cccccc-cCCCCCeeeecccCCCCCccccCCCccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCc
Q 002123 119 AVQPGI-NSLSGNRSGINGIQSESSLFSSSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNL 196 (964)
Q Consensus 119 ~~~~~~-~~~~g~~i~im~s~rd~sl~sSsl~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnI 196 (964)
..+..+ ..++|++|||||+|||+++ ||++||+. +|++.|+++ | +.+|+|
T Consensus 53 A~~~~n~~~~~~~~~rim~s~rd~~~-------~~i~nl~~~~~~~~~~d~--------------f--------~~~g~i 103 (369)
T KOG0123|consen 53 ALDTMNFDVLKGKPIRIMWSQRDPSL-------VFIKNLDESIDNKSLYDT--------------F--------SEFGNI 103 (369)
T ss_pred HHHHcCCcccCCcEEEeehhccCCce-------eeecCCCcccCcHHHHHH--------------H--------HhhcCe
Confidence 334444 5899999999999999998 99999987 999999999 9 999999
Q ss_pred CCCh---hhhhccCCCCeeeeecCCChhhhhhhHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCC
Q 002123 197 LPDE---DDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYG 273 (964)
Q Consensus 197 LpdE---dDL~sG~SkGfGFV~f~~t~edaeei~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~ 273 (964)
||.+ ++ .| ++|| ||+ |+++++|+ ++|..+||+.+. +.++++|....+..+. +.... .
T Consensus 104 lS~kv~~~~--~g-~kg~-FV~-f~~e~~a~--~ai~~~ng~ll~-~kki~vg~~~~~~er~-----------~~~~~-~ 163 (369)
T KOG0123|consen 104 LSCKVATDE--NG-SKGY-FVQ-FESEESAK--KAIEKLNGMLLN-GKKIYVGLFERKEERE-----------APLGE-Y 163 (369)
T ss_pred eEEEEEEcC--CC-ceee-EEE-eCCHHHHH--HHHHHhcCcccC-CCeeEEeeccchhhhc-----------ccccc-h
Confidence 9921 21 45 9999 999 56888878 899999999998 7777887765522211 01111 3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
....+.++|+|++.+++++.|.++|.+||.|.++.+ .++++||+||.|.+.++|..|++.|++..+.+..+.|..+
T Consensus 164 ~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~a 243 (369)
T KOG0123|consen 164 KKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRA 243 (369)
T ss_pred hhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccc
Confidence 345689999999999999999999999999999976 5779999999999999999999999999999999999998
Q ss_pred CCCCCCC--------------CccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC----CCCceEEEeeCCHHH
Q 002123 350 IPKDNPS--------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ----HKHNHKFIEFYDIRA 411 (964)
Q Consensus 350 ~~k~~~~--------------~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~----~skGfaFVeF~d~es 411 (964)
+.+.++. .......+|||+||+..++++.|+++|+.||+|.+++++. .++|||||+|...++
T Consensus 244 qkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~ee 323 (369)
T KOG0123|consen 244 QKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEE 323 (369)
T ss_pred ccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHH
Confidence 8754321 1133556999999999999999999999999999998865 478999999999999
Q ss_pred HHHHHHHhCCceeCCceEEEEeccCCchhh
Q 002123 412 AETALRTLNRSDVAGKQIKLEASRPGGARR 441 (964)
Q Consensus 412 A~kAL~~LNG~~I~Gr~LkV~~A~~k~~r~ 441 (964)
|.+|+..+|+..+.+++|.|.+++.+..++
T Consensus 324 A~~A~~~~n~~~i~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 324 AKKAMTEMNGRLIGGKPLYVAVAQRKEDRR 353 (369)
T ss_pred HHHHHHhhChhhhcCCchhhhHHhhhccch
Confidence 999999999999999999999999777765
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=9.1e-30 Score=297.56 Aligned_cols=292 Identities=16% Similarity=0.188 Sum_probs=212.4
Q ss_pred ccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhHH
Q 002123 150 DIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFDL 228 (964)
Q Consensus 150 nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpdEdDL~sG~SkGfGFV~f~~t~edaeei~a 228 (964)
.|||+||++ +++++|++. | +.||.|.... + -.++|||||+| ++.++|+ +|
T Consensus 4 vv~V~nLp~~~te~~L~~~--------------f--------~~fG~V~~v~--i--~~~k~~afVef-~~~e~A~--~A 54 (481)
T TIGR01649 4 VVHVRNLPQDVVEADLVEA--------------L--------IPFGPVSYVM--M--LPGKRQALVEF-EDEESAK--AC 54 (481)
T ss_pred EEEEcCCCCCCCHHHHHHH--------------H--------HhcCCeeEEE--E--ECCCCEEEEEe-CchHHHH--HH
Confidence 699999998 899999988 8 6677665521 1 12678999995 5777777 77
Q ss_pred Hhc--cCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEE
Q 002123 229 FSS--GGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT 306 (964)
Q Consensus 229 i~s--~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~s 306 (964)
+.. +++..+.| +.+.|......- ..... +.. ..........+|||+||+..+|+++|+++|++||+|..
T Consensus 55 i~~~~~~~~~l~g-~~l~v~~s~~~~---~~~~~--~~~---~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~ 125 (481)
T TIGR01649 55 VNFATSVPIYIRG-QPAFFNYSTSQE---IKRDG--NSD---FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLR 125 (481)
T ss_pred HHHhhcCCceEcC-eEEEEEecCCcc---cccCC--CCc---ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEE
Confidence 764 57888884 333332221100 00000 000 00111223468999999999999999999999999999
Q ss_pred EEe-cCCccceEEEEeCCHHHHHHHHHHccCCcccc--ccceeeecCCCCC--------------------CC-------
Q 002123 307 IYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIPKDN--------------------PS------- 356 (964)
Q Consensus 307 vki-tgksRGfaFV~F~d~esA~kAl~~Lng~~i~G--r~L~V~~A~~k~~--------------------~~------- 356 (964)
|++ ..+.+|+|||+|.+.++|.+|++.|||+.|.+ +.|+|.|+.++.- +.
T Consensus 126 v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~ 205 (481)
T TIGR01649 126 IVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTH 205 (481)
T ss_pred EEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccc
Confidence 987 33345799999999999999999999999965 4777777654210 00
Q ss_pred ----C------------------------------------------------------------ccCCcceEEEeccCC
Q 002123 357 ----E------------------------------------------------------------KDANQGTLVVFNLDS 372 (964)
Q Consensus 357 ----~------------------------------------------------------------~~~~~~tLfV~NLp~ 372 (964)
. ......+|||+||++
T Consensus 206 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~ 285 (481)
T TIGR01649 206 RQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQ 285 (481)
T ss_pred cccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCC
Confidence 0 001335899999997
Q ss_pred -CCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCchhhhc--------
Q 002123 373 -SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFM-------- 443 (964)
Q Consensus 373 -~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~r~~~-------- 443 (964)
.+++++|+++|++||.|.+|+++.+++|||||+|.+.++|.+|++.|||..|.|++|+|.+++........
T Consensus 286 ~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~ 365 (481)
T TIGR01649 286 EKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGL 365 (481)
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCC
Confidence 69999999999999999999999888999999999999999999999999999999999998654211000
Q ss_pred ---chhhh---------h--------cccCccc-CCCCCCCChhhc----ccCcc--eEEEec
Q 002123 444 ---VQSEQ---------E--------QDDLNLC-QIPFDDLSSGQM----VSSGV--ITSTCM 479 (964)
Q Consensus 444 ---qq~eq---------~--------q~E~nL~-kNLp~s~tee~L----s~fG~--I~s~~~ 479 (964)
+.+.. . .-..+|+ +|||.++++++| ..||. |..+..
T Consensus 366 ~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~ 428 (481)
T TIGR01649 366 TSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKF 428 (481)
T ss_pred cccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 00000 0 0013566 999999999999 77897 776633
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=6.4e-29 Score=290.46 Aligned_cols=287 Identities=17% Similarity=0.200 Sum_probs=207.1
Q ss_pred ccCCCCCeeeecccCCCCCcc----------ccCCCccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeE
Q 002123 124 INSLSGNRSGINGIQSESSLF----------SSSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQT 192 (964)
Q Consensus 124 ~~~~~g~~i~im~s~rd~sl~----------sSsl~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~ 192 (964)
...+.|++|+|+|+++...-+ .+....|||+||.. ++.+.|+.. | ..
T Consensus 62 ~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~--------------F--------~~ 119 (481)
T TIGR01649 62 PIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQI--------------F--------NP 119 (481)
T ss_pred CceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHH--------------H--------hc
Confidence 357899999999987542111 12334699999986 888889888 8 55
Q ss_pred ecCcCCChhhhhccCCCCeeeeecCCChhhhhhhHHHhccCCeeecCCc-c----------hhhhcccc---cccCC-CC
Q 002123 193 IGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDD-R----------LFAVQKNS---DFVGG-VS 257 (964)
Q Consensus 193 iGnILpdEdDL~sG~SkGfGFV~f~~t~edaeei~ai~s~nG~eLegd~-~----------v~vg~~ls---~l~~~-~~ 257 (964)
+|.|+... +..-...|+|||+| ++.++|+ +|+..+||.++.+.. . +.|.+.-. +++.. ..
T Consensus 120 ~G~V~~v~--i~~~~~~~~afVef-~~~~~A~--~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~ 194 (481)
T TIGR01649 120 YGKVLRIV--TFTKNNVFQALVEF-ESVNSAQ--HAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLP 194 (481)
T ss_pred cCCEEEEE--EEecCCceEEEEEE-CCHHHHH--HHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCC
Confidence 66655511 01111246999995 5777777 899999999986431 1 11100000 00000 00
Q ss_pred -------------CCCC----------CC---------C------Cc---------------------C--CCCCCCCCC
Q 002123 258 -------------NQGV----------SA---------G------SV---------------------V--GEHPYGEHP 276 (964)
Q Consensus 258 -------------n~~~----------~~---------~------~~---------------------~--~e~~~~e~~ 276 (964)
.+.. .+ . .. . ...+....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (481)
T TIGR01649 195 GRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGP 274 (481)
T ss_pred CCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCC
Confidence 0000 00 0 00 0 000011346
Q ss_pred CcEEEEecCCC-CCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCCC
Q 002123 277 SRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP 355 (964)
Q Consensus 277 srtLFVgNLP~-~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~ 355 (964)
+++|||+|||+ .+|+++|+++|++||.|..|++....+|||||+|.+.++|++|++.|||..|.|++|+|.++..+...
T Consensus 275 ~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~ 354 (481)
T TIGR01649 275 GSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQ 354 (481)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccccc
Confidence 78999999998 69999999999999999999985556899999999999999999999999999999999987543110
Q ss_pred CC------------c---------------------cCCcceEEEeccCCCCcHHHHHHHhhccCc--eEEEEecCCC--
Q 002123 356 SE------------K---------------------DANQGTLVVFNLDSSVSTEELHQIFGIYGE--IREIRDTQHK-- 398 (964)
Q Consensus 356 ~~------------~---------------------~~~~~tLfV~NLp~~vTeedLrelFs~fG~--I~sIri~~~s-- 398 (964)
.. + ..+..+|||+|||..+++++|+++|+.||. |+.|++..+.
T Consensus 355 ~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~ 434 (481)
T TIGR01649 355 PPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNE 434 (481)
T ss_pred CCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCC
Confidence 00 0 013458999999999999999999999998 8889886543
Q ss_pred -CceEEEeeCCHHHHHHHHHHhCCceeCCce------EEEEeccCC
Q 002123 399 -HNHKFIEFYDIRAAETALRTLNRSDVAGKQ------IKLEASRPG 437 (964)
Q Consensus 399 -kGfaFVeF~d~esA~kAL~~LNG~~I~Gr~------LkV~~A~~k 437 (964)
+++|||+|.+.++|.+||..||+..|.++. |+|.+++++
T Consensus 435 ~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 435 RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 789999999999999999999999999885 999999874
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=7.2e-28 Score=268.94 Aligned_cols=159 Identities=22% Similarity=0.408 Sum_probs=143.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
+.++|||+|||.++||++|+++|++||+|.+|++ +++++|||||+|.+.++|++||+.|+|+.|.|++|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4689999999999999999999999999999976 57899999999999999999999999999999999999998
Q ss_pred CCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeC
Q 002123 351 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVA 425 (964)
Q Consensus 351 ~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~ 425 (964)
++... ....+|||+|||..+++++|+++|++||.|..+++..+ ++|||||+|.+.++|++|++.|||..+.
T Consensus 82 ~~~~~----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 82 PSSDS----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred ccccc----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 75432 34568999999999999999999999999999887543 5889999999999999999999999987
Q ss_pred C--ceEEEEeccCCc
Q 002123 426 G--KQIKLEASRPGG 438 (964)
Q Consensus 426 G--r~LkV~~A~~k~ 438 (964)
| .+|.|.++....
T Consensus 158 g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 158 GCTEPITVKFANNPS 172 (352)
T ss_pred CCceeEEEEECCCCC
Confidence 6 678999886543
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=3.5e-27 Score=276.25 Aligned_cols=267 Identities=16% Similarity=0.187 Sum_probs=187.1
Q ss_pred CccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCC--ChhhhhccCCCCeeeeecCCChhhhhh
Q 002123 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP--DEDDLFSGVTDDMGHNFQANTVDDLED 225 (964)
Q Consensus 149 ~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILp--dEdDL~sG~SkGfGFV~f~~t~edaee 225 (964)
..|||+||+. ++.+.|.+. |... +....++...+ ...++.....+|||||+| .+.++|+
T Consensus 176 r~lyVgnLp~~~t~~~l~~~--------------F~~~--~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF-~~~e~A~- 237 (509)
T TIGR01642 176 RRLYVGGIPPEFVEEAVVDF--------------FNDL--MIATGYHKAEDGKHVSSVNINKEKNFAFLEF-RTVEEAT- 237 (509)
T ss_pred cEEEEeCCCCCCCHHHHHHH--------------HHHH--HHhcCCCCCCCCCceEEEEECCCCCEEEEEe-CCHHHHh-
Confidence 4699999997 888888877 5321 00000111111 011223445789999995 4777777
Q ss_pred hHHHhccCCeeecCCcchhhhcccccccCC--CCC--CC---CCCCCc--CCCCCCCCCCCcEEEEecCCCCCCHHHHHH
Q 002123 226 FDLFSSGGGMELEGDDRLFAVQKNSDFVGG--VSN--QG---VSAGSV--VGEHPYGEHPSRTLFVRNINSNVEDSELKA 296 (964)
Q Consensus 226 i~ai~s~nG~eLegd~~v~vg~~ls~l~~~--~~n--~~---~~~~~~--~~e~~~~e~~srtLFVgNLP~~vTEedLre 296 (964)
.|+ .++|+.|.| ..+.+.+........ ... .. ...... ...........++|||+|||..+|+++|++
T Consensus 238 -~Al-~l~g~~~~g-~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~ 314 (509)
T TIGR01642 238 -FAM-ALDSIIYSN-VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKE 314 (509)
T ss_pred -hhh-cCCCeEeeC-ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 677 599999984 444443221110000 000 00 000000 000011234568999999999999999999
Q ss_pred hhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCCCCC--------------
Q 002123 297 LFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSE-------------- 357 (964)
Q Consensus 297 lFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~~~-------------- 357 (964)
+|++||.|..+.+ +++++|||||+|.+.++|+.||+.|+|..|.|++|.|.++........
T Consensus 315 ~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~ 394 (509)
T TIGR01642 315 LLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLA 394 (509)
T ss_pred HHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccccccccccccc
Confidence 9999999998875 588999999999999999999999999999999999999854321100
Q ss_pred ----------ccCCcceEEEeccCCC--C--------cHHHHHHHhhccCceEEEEecCC--------CCceEEEeeCCH
Q 002123 358 ----------KDANQGTLVVFNLDSS--V--------STEELHQIFGIYGEIREIRDTQH--------KHNHKFIEFYDI 409 (964)
Q Consensus 358 ----------~~~~~~tLfV~NLp~~--v--------TeedLrelFs~fG~I~sIri~~~--------skGfaFVeF~d~ 409 (964)
......+|+|.|+... + ..++|+++|++||.|+.|+|+.. ..|++||+|.++
T Consensus 395 ~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~ 474 (509)
T TIGR01642 395 KALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADV 474 (509)
T ss_pred ccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCH
Confidence 0123568999999532 1 13689999999999999998743 358999999999
Q ss_pred HHHHHHHHHhCCceeCCceEEEEeccC
Q 002123 410 RAAETALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 410 esA~kAL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
++|++|+.+|||..|+|+.|.|.|...
T Consensus 475 e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 475 RSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 999999999999999999999999764
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=3e-27 Score=265.24 Aligned_cols=164 Identities=23% Similarity=0.408 Sum_probs=147.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
......++|||+|||+++||++|+++|++||+|++|++ ++++||||||+|.++++|++||+.|++..|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 35557899999999999999999999999999999976 6789999999999999999999999999999999999
Q ss_pred eecCCCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCC
Q 002123 347 HYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNR 421 (964)
Q Consensus 347 ~~A~~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG 421 (964)
.++.+... .....+|||.|||..+++++|+++|++||+|++|+++.+ +++||||+|.+.++|++||+.||+
T Consensus 182 ~~a~p~~~----~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 182 SYARPGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred eccccccc----ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 99876432 234578999999999999999999999999999988654 468999999999999999999999
Q ss_pred ceeCC--ceEEEEeccCCch
Q 002123 422 SDVAG--KQIKLEASRPGGA 439 (964)
Q Consensus 422 ~~I~G--r~LkV~~A~~k~~ 439 (964)
..+.+ ++|+|.+++....
T Consensus 258 ~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 258 VIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred CccCCCceeEEEEECCcccc
Confidence 99865 7999999987543
No 14
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=6.6e-27 Score=270.62 Aligned_cols=254 Identities=20% Similarity=0.299 Sum_probs=188.6
Q ss_pred CccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCC--hhhhhccCCCCeeeeecCCChhhhhh
Q 002123 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSGVTDDMGHNFQANTVDDLED 225 (964)
Q Consensus 149 ~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpd--EdDL~sG~SkGfGFV~f~~t~edaee 225 (964)
..|||+||+. ++.+.|.+. | ..+|.|... -.|..++.++|||||+|. +.++|+
T Consensus 90 ~~l~V~nlp~~~~~~~l~~~--------------F--------~~~G~v~~v~i~~d~~~~~skg~afVeF~-~~e~A~- 145 (457)
T TIGR01622 90 RTVFVLQLALKARERDLYEF--------------F--------SKVGKVRDVQCIKDRNSRRSKGVAYVEFY-DVESVI- 145 (457)
T ss_pred cEEEEeCCCCCCCHHHHHHH--------------H--------HhcCCeeEEEEeecCCCCCcceEEEEEEC-CHHHHH-
Confidence 3699999998 888888877 7 334433330 112347889999999955 777777
Q ss_pred hHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEE
Q 002123 226 FDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIR 305 (964)
Q Consensus 226 i~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~ 305 (964)
+|+. ++|..|.|.. +.+..... .++...... ..........++|||+|||.++|+++|+++|++||.|.
T Consensus 146 -~Al~-l~g~~~~g~~-i~v~~~~~-----~~~~~~~~~---~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~ 214 (457)
T TIGR01622 146 -KALA-LTGQMLLGRP-IIVQSSQA-----EKNRAAKAA---THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIE 214 (457)
T ss_pred -HHHH-hCCCEECCee-eEEeecch-----hhhhhhhcc---cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeE
Confidence 6775 7888887433 22211110 000000000 00011122379999999999999999999999999999
Q ss_pred EEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCCC-------------------------
Q 002123 306 TIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP------------------------- 355 (964)
Q Consensus 306 svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~------------------------- 355 (964)
.|.+ +++++|||||+|.+.++|.+|++.|+|..|.|++|.|.|+......
T Consensus 215 ~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (457)
T TIGR01622 215 DVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEER 294 (457)
T ss_pred EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccch
Confidence 9976 4688999999999999999999999999999999999995421000
Q ss_pred ----------C-------------------------------------------------C--ccCCcceEEEeccCCCC
Q 002123 356 ----------S-------------------------------------------------E--KDANQGTLVVFNLDSSV 374 (964)
Q Consensus 356 ----------~-------------------------------------------------~--~~~~~~tLfV~NLp~~v 374 (964)
. . ......+|+|.||-...
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~ 374 (457)
T TIGR01622 295 EQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPA 374 (457)
T ss_pred HHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCc
Confidence 0 0 01234578999995443
Q ss_pred c----------HHHHHHHhhccCceEEEEec-CCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCC
Q 002123 375 S----------TEELHQIFGIYGEIREIRDT-QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (964)
Q Consensus 375 T----------eedLrelFs~fG~I~sIri~-~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k 437 (964)
+ .+||+++|++||.|++|.+. +...|++||+|.++++|.+|++.|||+.++|+.|.|.+....
T Consensus 375 ~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 375 TEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 3 37899999999999999987 567899999999999999999999999999999999997653
No 15
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.8e-26 Score=240.32 Aligned_cols=244 Identities=17% Similarity=0.287 Sum_probs=192.6
Q ss_pred CCccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCCh--hhhhccCCCCeeeeecCCChhhhh
Q 002123 148 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDE--DDLFSGVTDDMGHNFQANTVDDLE 224 (964)
Q Consensus 148 l~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpdE--dDL~sG~SkGfGFV~f~~t~edae 224 (964)
-.||.|.=|+- .+.+++... |.| ||+|.+.+ +|-.+|.|-|||||.+. ..+||+
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSL--------------F~S--------iGeiEScKLvRDKitGqSLGYGFVNYv-~p~DAe 97 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSL--------------FGS--------IGEIESCKLVRDKITGQSLGYGFVNYV-RPKDAE 97 (360)
T ss_pred cceeeeeecccccCHHHHHHH--------------hhc--------ccceeeeeeeeccccccccccceeeec-ChHHHH
Confidence 35666666664 455555555 844 44444522 45579999999999966 666668
Q ss_pred hhHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcE
Q 002123 225 DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDI 304 (964)
Q Consensus 225 ei~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I 304 (964)
+||...||..|. .+.+.|. +.+ .........+|||.+||..+|..||..+|++||.|
T Consensus 98 --~AintlNGLrLQ-~KTIKVS-----yAR---------------PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrI 154 (360)
T KOG0145|consen 98 --KAINTLNGLRLQ-NKTIKVS-----YAR---------------PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRI 154 (360)
T ss_pred --HHHhhhcceeec-cceEEEE-----ecc---------------CChhhhcccceEEecCCccchHHHHHHHHHHhhhh
Confidence 899999999998 4432221 111 11233456789999999999999999999999998
Q ss_pred EEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccc--ccceeeecCCCCCCC---------------------
Q 002123 305 RTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIPKDNPS--------------------- 356 (964)
Q Consensus 305 ~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~G--r~L~V~~A~~k~~~~--------------------- 356 (964)
..-++ ++.+||.|||.|...++|+.||+.|||+.-.| .+|.|+|+.......
T Consensus 155 ItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~h 234 (360)
T KOG0145|consen 155 ITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMH 234 (360)
T ss_pred hhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCccc
Confidence 76654 79999999999999999999999999998776 689999985432110
Q ss_pred --------------------------------------CccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-
Q 002123 357 --------------------------------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH- 397 (964)
Q Consensus 357 --------------------------------------~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~- 397 (964)
.......+|||.||.++.+|.-|+++|.+||.|..|+++++
T Consensus 235 h~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ 314 (360)
T KOG0145|consen 235 HQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDF 314 (360)
T ss_pred chhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecC
Confidence 00012359999999999999999999999999999999764
Q ss_pred ----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCC
Q 002123 398 ----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (964)
Q Consensus 398 ----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k 437 (964)
.||||||...+.++|..|+..|||..+++|.|.|.+...+
T Consensus 315 ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 315 TTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred CcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 7899999999999999999999999999999999997654
No 16
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.8e-26 Score=241.98 Aligned_cols=162 Identities=20% Similarity=0.434 Sum_probs=149.5
Q ss_pred CcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCC
Q 002123 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (964)
Q Consensus 277 srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~ 351 (964)
.-.|||+.|..+++.++|++.|.+||+|.++++ ++|+||||||.|.++++|++||..|||+.|.+|.|+-.||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 568999999999999999999999999999986 899999999999999999999999999999999999999988
Q ss_pred CCCCCC------------ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHh
Q 002123 352 KDNPSE------------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL 419 (964)
Q Consensus 352 k~~~~~------------~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~L 419 (964)
|..... .....+++||+|++..++|++|++.|++||.|.+||+.++ +||+||+|.+.|+|.+||..|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-qGYaFVrF~tkEaAahAIv~m 220 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-QGYAFVRFETKEAAAHAIVQM 220 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-cceEEEEecchhhHHHHHHHh
Confidence 764311 1234579999999999999999999999999999999987 999999999999999999999
Q ss_pred CCceeCCceEEEEeccCCch
Q 002123 420 NRSDVAGKQIKLEASRPGGA 439 (964)
Q Consensus 420 NG~~I~Gr~LkV~~A~~k~~ 439 (964)
|+.+|+|..++|.|-+....
T Consensus 221 Nntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 221 NNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred cCceeCceEEEEeccccCCC
Confidence 99999999999999886543
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=5e-26 Score=256.99 Aligned_cols=281 Identities=20% Similarity=0.283 Sum_probs=231.0
Q ss_pred ccccccCCCCCcccccccCcccccCCCCCCCCccccccceeeEecCcCC--ChhhhhccCCCCeeeeecCCChhhhhhhH
Q 002123 150 DIFTRKMKLSGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP--DEDDLFSGVTDDMGHNFQANTVDDLEDFD 227 (964)
Q Consensus 150 nlFv~nL~~idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILp--dEdDL~sG~SkGfGFV~f~~t~edaeei~ 227 (964)
.|+++ +.+++..|++. | +..|.+++ -..|. + |-|||||. |.+.++|+ +
T Consensus 3 sl~vg--~~v~e~~l~~~--------------f--------~~~~~v~s~rvc~d~-t--slgy~yvn-f~~~~da~--~ 52 (369)
T KOG0123|consen 3 SLYVG--PDVTEAMLFDK--------------F--------SPAGPVLSIRVCRDA-T--SLGYAYVN-FQQPADAE--R 52 (369)
T ss_pred ceecC--CcCChHHHHHH--------------h--------cccCCceeEEEeecC-C--ccceEEEe-cCCHHHHH--H
Confidence 46777 55777788888 8 88888888 34565 4 99999999 55888888 8
Q ss_pred HHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEE
Q 002123 228 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI 307 (964)
Q Consensus 228 ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~sv 307 (964)
|+.++|...+.|... +. .|+ .+....|||+||++++|..+|.++|+.||+|++|
T Consensus 53 A~~~~n~~~~~~~~~----ri-------------m~s---------~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~ 106 (369)
T KOG0123|consen 53 ALDTMNFDVLKGKPI----RI-------------MWS---------QRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSC 106 (369)
T ss_pred HHHHcCCcccCCcEE----Ee-------------ehh---------ccCCceeeecCCCcccCcHHHHHHHHhhcCeeEE
Confidence 999999988884432 11 111 1111229999999999999999999999999999
Q ss_pred Ee---cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCCCCCcc----CCcceEEEeccCCCCcHHHHH
Q 002123 308 YT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKD----ANQGTLVVFNLDSSVSTEELH 380 (964)
Q Consensus 308 ki---tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~~~~~----~~~~tLfV~NLp~~vTeedLr 380 (964)
++ ..-++|| ||+|+++++|++|++.+||..+.+++|.|.....+.++.... .....++|+|++.+++++.|.
T Consensus 107 kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~ 185 (369)
T KOG0123|consen 107 KVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELK 185 (369)
T ss_pred EEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHH
Confidence 97 2338999 999999999999999999999999999999998877654332 234689999999999999999
Q ss_pred HHhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCchhh--hcchhhhh-----
Q 002123 381 QIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR--FMVQSEQE----- 449 (964)
Q Consensus 381 elFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~r~--~~qq~eq~----- 449 (964)
++|..||.|.++.++++ +++|+||.|+++++|..|++.|++..+.++.+.|..++.+.++. +.++.++.
T Consensus 186 ~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~ 265 (369)
T KOG0123|consen 186 DLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRS 265 (369)
T ss_pred HhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhcc
Confidence 99999999999998763 68999999999999999999999999999999999999876665 33322222
Q ss_pred --cccCccc-CCCCCCCChhhc----ccCcceEEE---ecCCCCccee
Q 002123 450 --QDDLNLC-QIPFDDLSSGQM----VSSGVITST---CMDNGSIQVL 487 (964)
Q Consensus 450 --q~E~nL~-kNLp~s~tee~L----s~fG~I~s~---~~enG~~rGf 487 (964)
....+|| +|++..++.+.| ..||+|+++ .+++|.++||
T Consensus 266 ~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~ 313 (369)
T KOG0123|consen 266 VSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGF 313 (369)
T ss_pred ccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccce
Confidence 2234677 999999999999 789999998 5678999998
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.93 E-value=2.4e-25 Score=262.65 Aligned_cols=164 Identities=19% Similarity=0.382 Sum_probs=145.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
...++|||+|||+++++++|+++|++||+|.+|++ ++++||||||+|.+.++|++|++.|||+.|.|++|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999999999999986 6889999999999999999999999999999999999876
Q ss_pred CCCCCCC-------CccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHH
Q 002123 350 IPKDNPS-------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALR 417 (964)
Q Consensus 350 ~~k~~~~-------~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~ 417 (964)
....... .......+|||+||+.++++++|+++|++||.|++|++..+ ++|||||+|.+.++|.+|++
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 5332111 11223469999999999999999999999999999998653 68999999999999999999
Q ss_pred HhCCceeCCceEEEEeccCCc
Q 002123 418 TLNRSDVAGKQIKLEASRPGG 438 (964)
Q Consensus 418 ~LNG~~I~Gr~LkV~~A~~k~ 438 (964)
.||+..|+|+.|+|.++.++.
T Consensus 265 amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HhCCCeeCCeEEEEEecCCCc
Confidence 999999999999999988643
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.1e-24 Score=244.95 Aligned_cols=269 Identities=19% Similarity=0.307 Sum_probs=191.4
Q ss_pred CccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 002123 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 227 (964)
Q Consensus 149 ~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpdEdDL~sG~SkGfGFV~f~~t~edaeei~ 227 (964)
..|||.+|+. +.+..|.+. |.....+.-.+.+ +. --++.++|||||+|. -+||++ +
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~--------------FS~vGPik~~~vV----t~--~gs~~~RGfgfVtFa-m~ED~q--r 62 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEF--------------FSYVGPIKHAVVV----TN--KGSSEKRGFGFVTFA-MEEDVQ--R 62 (678)
T ss_pred ceEEEecCCCccchhHHHHh--------------hhcccCcceeEEe----cC--CCcccccCccceeee-hHhHHH--H
Confidence 6799999998 666566555 6222222111111 11 114458999999955 777777 7
Q ss_pred HHhccCCeeecCCcchhhhcccccccCCCCCCCCCCC---CcCCCC---CCCCCCCcEEEEecCCCCCCHHHHHHhhccC
Q 002123 228 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAG---SVVGEH---PYGEHPSRTLFVRNINSNVEDSELKALFEQF 301 (964)
Q Consensus 228 ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~---~~~~e~---~~~e~~srtLFVgNLP~~vTEedLrelFs~f 301 (964)
|+....+..|+|. .+.+.............-+-+.+ ...... .....+.-+|.|+|||+.+.+.+|+.+|++|
T Consensus 63 A~~e~~~~kf~Gr-~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~ 141 (678)
T KOG0127|consen 63 ALAETEQSKFEGR-ILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNF 141 (678)
T ss_pred HHHHhhcCcccce-ecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhc
Confidence 7777666666633 33332322111000000000000 010000 1112346799999999999999999999999
Q ss_pred CcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCCC----------------------
Q 002123 302 GDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP---------------------- 355 (964)
Q Consensus 302 G~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~---------------------- 355 (964)
|.|.+|.| .++-+|||||.|.+..+|.+||+.+|+..|.||+|.|+||.+|..-
T Consensus 142 G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e 221 (678)
T KOG0127|consen 142 GKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKE 221 (678)
T ss_pred ceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcc
Confidence 99999987 4667799999999999999999999999999999999998654210
Q ss_pred -------------------CCc--c-------------------------------------------CCcceEEEeccC
Q 002123 356 -------------------SEK--D-------------------------------------------ANQGTLVVFNLD 371 (964)
Q Consensus 356 -------------------~~~--~-------------------------------------------~~~~tLfV~NLp 371 (964)
.+. + ....+|||+|||
T Consensus 222 ~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~ 301 (678)
T KOG0127|consen 222 ADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLP 301 (678)
T ss_pred cccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCC
Confidence 000 0 012589999999
Q ss_pred CCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHh-----CC-ceeCCceEEEEeccCCchh
Q 002123 372 SSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTL-----NR-SDVAGKQIKLEASRPGGAR 440 (964)
Q Consensus 372 ~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~L-----NG-~~I~Gr~LkV~~A~~k~~r 440 (964)
+++++++|.+.|++||+|.++.++. .++|.|||.|.+..+|++||... .| ..|.||.|+|.+|..+.+-
T Consensus 302 fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA 381 (678)
T KOG0127|consen 302 FDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEA 381 (678)
T ss_pred ccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHH
Confidence 9999999999999999999987753 48999999999999999999976 24 5689999999999987765
Q ss_pred h
Q 002123 441 R 441 (964)
Q Consensus 441 ~ 441 (964)
.
T Consensus 382 ~ 382 (678)
T KOG0127|consen 382 A 382 (678)
T ss_pred H
Confidence 5
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=2.6e-24 Score=253.96 Aligned_cols=169 Identities=13% Similarity=0.279 Sum_probs=129.0
Q ss_pred CCCccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCC--hhhhhccCCCCeeeeecCCChhhh
Q 002123 147 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSGVTDDMGHNFQANTVDDL 223 (964)
Q Consensus 147 sl~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpd--EdDL~sG~SkGfGFV~f~~t~eda 223 (964)
...+|||+||++ ++++.|.+. | ..+|.|... ..|..++.++|||||+ |++.+++
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~l--------------F--------~~fG~I~sV~I~~D~~TgkskGfAFVe-F~s~e~A 162 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRA--------------F--------DPFGPIKSINMSWDPATGKHKGFAFVE-YEVPEAA 162 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHH--------------H--------HccCCEEEEEEeecCCCCCcCCeEEEE-eCcHHHH
Confidence 346899999998 888889888 8 555655441 1233478999999999 5688888
Q ss_pred hhhHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCc
Q 002123 224 EDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD 303 (964)
Q Consensus 224 eei~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~ 303 (964)
+ .|+..+||..|+|. .+.+++... ... . ..............++|||+|||+++++++|+++|++||.
T Consensus 163 ~--~Ai~~lnG~~i~GR-~IkV~rp~~-----~p~---a-~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~ 230 (612)
T TIGR01645 163 Q--LALEQMNGQMLGGR-NIKVGRPSN-----MPQ---A-QPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE 230 (612)
T ss_pred H--HHHHhcCCeEEecc-eeeeccccc-----ccc---c-ccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC
Confidence 8 89999999999844 444432110 000 0 0000011112335689999999999999999999999999
Q ss_pred EEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC
Q 002123 304 IRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 304 I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
|.+|++ ++++||||||+|.+.++|.+|++.||+..|.|+.|+|.++.
T Consensus 231 I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 231 IVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred eeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 999986 57799999999999999999999999999999999997754
No 21
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.92 E-value=3.4e-24 Score=252.56 Aligned_cols=191 Identities=21% Similarity=0.289 Sum_probs=160.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccc-cccceeeecC
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLR-RRKLDIHYSI 350 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~-Gr~L~V~~A~ 350 (964)
..++|||+|||++++|++|+++|++||.|.+|++ ++++||||||+|.+.++|++||+.||+..|. |+.|.|..+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 4699999999999999999999999999999986 6899999999999999999999999999885 7888887653
Q ss_pred CCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCc-eEEEEec------CCCCceEEEeeCCHHHHHHHHHHhCCc-
Q 002123 351 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGE-IREIRDT------QHKHNHKFIEFYDIRAAETALRTLNRS- 422 (964)
Q Consensus 351 ~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~-I~sIri~------~~skGfaFVeF~d~esA~kAL~~LNG~- 422 (964)
..++|||+|||..+++++|+++|++++. ++++.+. .++++||||+|.++++|++|++.|+..
T Consensus 137 ----------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gk 206 (578)
T TIGR01648 137 ----------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGR 206 (578)
T ss_pred ----------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccc
Confidence 2468999999999999999999999864 4444332 236899999999999999999988643
Q ss_pred -eeCCceEEEEeccCCchhhhcchhhhhcccCccc-CCCCCCCChhhc----ccC--cceEEEecC
Q 002123 423 -DVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLC-QIPFDDLSSGQM----VSS--GVITSTCMD 480 (964)
Q Consensus 423 -~I~Gr~LkV~~A~~k~~r~~~qq~eq~q~E~nL~-kNLp~s~tee~L----s~f--G~I~s~~~e 480 (964)
.+.|+.|.|.|+.++.... .+.....+.|| +||+.++++++| ..| |.|..+...
T Consensus 207 i~l~Gr~I~VdwA~p~~~~d----~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~ 268 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEEEVD----EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI 268 (578)
T ss_pred eEecCceEEEEeeccccccc----ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee
Confidence 5789999999998865322 12223345678 999999999999 778 999998544
No 22
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=7.4e-24 Score=234.47 Aligned_cols=192 Identities=20% Similarity=0.300 Sum_probs=167.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccc-cccceeee
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLR-RRKLDIHY 348 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~-Gr~L~V~~ 348 (964)
...+.|||+.||.++.|++|..+|++.|+|.++++ +|.+||||||+|.++++|++||+.||+++|. |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 55799999999999999999999999999999986 7999999999999999999999999999986 89999988
Q ss_pred cCCCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCc-eEEEEec------CCCCceEEEeeCCHHHHHHHHHHhCC
Q 002123 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGE-IREIRDT------QHKHNHKFIEFYDIRAAETALRTLNR 421 (964)
Q Consensus 349 A~~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~-I~sIri~------~~skGfaFVeF~d~esA~kAL~~LNG 421 (964)
+.. .+.|||+|+|..+++++|.+.|++.++ |..|.+. .++||||||+|+++..|..|-+.|-.
T Consensus 161 Sva----------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 161 SVA----------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred eee----------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 753 478999999999999999999999876 6666654 24799999999999999999988744
Q ss_pred c--eeCCceEEEEeccCCchhhhcchhhhhcccCccc-CCCCCCCChhhc----ccCcceEEEecC
Q 002123 422 S--DVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLC-QIPFDDLSSGQM----VSSGVITSTCMD 480 (964)
Q Consensus 422 ~--~I~Gr~LkV~~A~~k~~r~~~qq~eq~q~E~nL~-kNLp~s~tee~L----s~fG~I~s~~~e 480 (964)
. .+.|..|.|.||.+.++.. .+.....+-|| +||+.++|++.| ..||.|..+...
T Consensus 231 g~~klwgn~~tVdWAep~~e~d----ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~ 292 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWAEPEEEPD----EDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP 292 (506)
T ss_pred CceeecCCcceeeccCcccCCC----hhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc
Confidence 3 4789999999999977543 22344457888 999999999999 778999888443
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=9.5e-24 Score=244.40 Aligned_cols=163 Identities=26% Similarity=0.455 Sum_probs=145.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
.+...++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++||. |+|+.+.|++|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 4556799999999999999999999999999999986 67899999999999999999996 99999999999999
Q ss_pred ecCCCCCCCC--------ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHH
Q 002123 348 YSIPKDNPSE--------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAET 414 (964)
Q Consensus 348 ~A~~k~~~~~--------~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~k 414 (964)
++........ ......+|||+|||..+++++|+++|++||.|..|++.. .++|||||+|.+.++|.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 8765433211 112357999999999999999999999999999998874 457899999999999999
Q ss_pred HHHHhCCceeCCceEEEEeccC
Q 002123 415 ALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 415 AL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
|++.|||..|.|++|+|.++..
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999983
No 24
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=6.8e-24 Score=233.70 Aligned_cols=165 Identities=21% Similarity=0.421 Sum_probs=147.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCC-cccc--ccce
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNK-PLRR--RKLD 345 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~-~i~G--r~L~ 345 (964)
+...-++||+-||..++|+||+++|++||.|.+|.+ ++.++|||||.|++.++|.+|+.+|+++ +|.| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 355689999999999999999999999999999954 7899999999999999999999999885 5776 7899
Q ss_pred eeecCCCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCC
Q 002123 346 IHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNR 421 (964)
Q Consensus 346 V~~A~~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG 421 (964)
|+||+.+.++. ..+++|||+-|+..++|.+++++|++||.|++|+|.++ +||||||+|.+.|.|..||++|||
T Consensus 111 vk~Ad~E~er~---~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng 187 (510)
T KOG0144|consen 111 VKYADGERERI---VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNG 187 (510)
T ss_pred ecccchhhhcc---ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhcc
Confidence 99998765443 44679999999999999999999999999999999764 899999999999999999999999
Q ss_pred c-eeCC--ceEEEEeccCCchhh
Q 002123 422 S-DVAG--KQIKLEASRPGGARR 441 (964)
Q Consensus 422 ~-~I~G--r~LkV~~A~~k~~r~ 441 (964)
. ++.| .+|.|+||.++.+|.
T Consensus 188 ~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 188 TQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred ceeeccCCCceEEEecccCCCch
Confidence 8 4665 699999999887665
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.89 E-value=1.1e-22 Score=238.35 Aligned_cols=164 Identities=15% Similarity=0.277 Sum_probs=138.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccC------------CcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCcc
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQF------------GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 339 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~f------------G~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i 339 (964)
......++|||+|||+++|+++|+++|.+| +.|..+.+ ++.+|||||+|.+.++|+.||+ |+|..|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-~~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-NKEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-CCCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 455677999999999999999999999975 34555555 7889999999999999999995 999999
Q ss_pred ccccceeeecCCCCCCC-------------------------CccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEe
Q 002123 340 RRRKLDIHYSIPKDNPS-------------------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD 394 (964)
Q Consensus 340 ~Gr~L~V~~A~~k~~~~-------------------------~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri 394 (964)
.|+.|.|.......... .......+|||+|||..+++++|+++|+.||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 99999997543211000 00122468999999999999999999999999999887
Q ss_pred cC-----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCC
Q 002123 395 TQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (964)
Q Consensus 395 ~~-----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k 437 (964)
+. .++|||||+|.+.++|..|++.|||..|+|+.|.|.++...
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 64 36899999999999999999999999999999999998654
No 26
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=3.3e-22 Score=225.21 Aligned_cols=161 Identities=20% Similarity=0.365 Sum_probs=144.8
Q ss_pred cEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 278 rtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
.||||++||++++.++|.++|+.+|+|..|.+ ++.+||||||+|.-.+++++|++...+..+.|+.|.|..+.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999976 4678999999999999999999999999999999999998765
Q ss_pred CCCCC--------------------c--cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC----CCceEEEee
Q 002123 353 DNPSE--------------------K--DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEF 406 (964)
Q Consensus 353 ~~~~~--------------------~--~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~----skGfaFVeF 406 (964)
....+ . +.....|.|+|||+.+.+.+|+.+|+.||.|.+|.|+.+ -.|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 32210 0 123578999999999999999999999999999999754 358999999
Q ss_pred CCHHHHHHHHHHhCCceeCCceEEEEeccCCc
Q 002123 407 YDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (964)
Q Consensus 407 ~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~ 438 (964)
.+..+|.+||+.+|+..|+||+|-|.||.++.
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 99999999999999999999999999998764
No 27
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1.3e-22 Score=223.72 Aligned_cols=275 Identities=17% Similarity=0.288 Sum_probs=204.3
Q ss_pred cccCCCCCeeeecccCCCCCccccCCCccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCC--C
Q 002123 123 GINSLSGNRSGINGIQSESSLFSSSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP--D 199 (964)
Q Consensus 123 ~~~~~~g~~i~im~s~rd~sl~sSsl~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILp--d 199 (964)
.+..+.|..++-+.++..+.---.+.-+|||+-++. -++++|... | +.+|++.. -
T Consensus 9 ~~~~~~gs~~~~~~~~~~~d~~d~~~vKlfVgqIprt~sE~dlr~l--------------F--------e~yg~V~einl 66 (510)
T KOG0144|consen 9 PPSPCGGSSLADNGSLDHTDNPDGSAVKLFVGQIPRTASEKDLREL--------------F--------EKYGNVYEINL 66 (510)
T ss_pred CCCCCCCcchhhcCCCCCCCCCCchhhhheeccCCccccHHHHHHH--------------H--------HHhCceeEEEe
Confidence 345666777777777766665556777899999987 556566665 6 34444444 1
Q ss_pred hhhhhccCCCCeeeeecCCChhhhhhhHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcE
Q 002123 200 EDDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRT 279 (964)
Q Consensus 200 EdDL~sG~SkGfGFV~f~~t~edaeei~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srt 279 (964)
-.|-.++-++||.||+|....|+.+.+.|+.+ -+.|.|... .+..++ .++|.. .....++
T Consensus 67 ~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn--~ktlpG~~~----pvqvk~-------------Ad~E~e-r~~~e~K 126 (510)
T KOG0144|consen 67 IKDKSTGQSKGCCFVKYYTRKEADEAINALHN--QKTLPGMHH----PVQVKY-------------ADGERE-RIVEERK 126 (510)
T ss_pred ecccccCcccceEEEEeccHHHHHHHHHHhhc--ccccCCCCc----ceeecc-------------cchhhh-ccccchh
Confidence 13345888999999998866666554444432 223332211 011100 011111 1134689
Q ss_pred EEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCC-cccc--ccceeeecCCC
Q 002123 280 LFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNK-PLRR--RKLDIHYSIPK 352 (964)
Q Consensus 280 LFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~-~i~G--r~L~V~~A~~k 352 (964)
|||+-|+..+||.|++++|.+||.|++|++ .+.+||||||+|.+.|.|..||++|||. +++| .+|.|+||+++
T Consensus 127 LFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtq 206 (510)
T KOG0144|consen 127 LFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQ 206 (510)
T ss_pred hhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccC
Confidence 999999999999999999999999999987 6889999999999999999999999996 5777 68999999776
Q ss_pred CCCCCc--------------------------------------------------------------------------
Q 002123 353 DNPSEK-------------------------------------------------------------------------- 358 (964)
Q Consensus 353 ~~~~~~-------------------------------------------------------------------------- 358 (964)
+++..+
T Consensus 207 kdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~~ta 286 (510)
T KOG0144|consen 207 KDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAAAATA 286 (510)
T ss_pred CCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhhhccc
Confidence 432000
Q ss_pred --------------------------------------------------------------------------------
Q 002123 359 -------------------------------------------------------------------------------- 358 (964)
Q Consensus 359 -------------------------------------------------------------------------------- 358 (964)
T Consensus 287 ~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~ 366 (510)
T KOG0144|consen 287 AQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAASLAN 366 (510)
T ss_pred ccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccccccc
Confidence
Q ss_pred ------------------------------------------------------cCCcceEEEeccCCCCcHHHHHHHhh
Q 002123 359 ------------------------------------------------------DANQGTLVVFNLDSSVSTEELHQIFG 384 (964)
Q Consensus 359 ------------------------------------------------------~~~~~tLfV~NLp~~vTeedLrelFs 384 (964)
.....+|||.+||.+.-+.+|-..|.
T Consensus 367 lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~~~f~ 446 (510)
T KOG0144|consen 367 LQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLIATFQ 446 (510)
T ss_pred cccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHHHHhc
Confidence 00014799999999999999999999
Q ss_pred ccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCch
Q 002123 385 IYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (964)
Q Consensus 385 ~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~ 439 (964)
.||.|.+.++.-+ ++.|+||.|++..+|.+||..|||..|+.++++|.+.+.+..
T Consensus 447 pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 447 PFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred cccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 9999999876433 688999999999999999999999999999999999877553
No 28
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.85 E-value=2.3e-21 Score=194.38 Aligned_cols=164 Identities=21% Similarity=0.315 Sum_probs=144.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
.....||||+||+..++++.|.++|-+.|+|..+++ +.+.+|||||+|.++|+|+-|++.|+...+.||+|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 345689999999999999999999999999999975 677999999999999999999999999999999999998
Q ss_pred cCCCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEE-Ee-----cCCCCceEEEeeCCHHHHHHHHHHhCCc
Q 002123 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREI-RD-----TQHKHNHKFIEFYDIRAAETALRTLNRS 422 (964)
Q Consensus 349 A~~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sI-ri-----~~~skGfaFVeF~d~esA~kAL~~LNG~ 422 (964)
+.. ..+.-....+|||+||++.+++..|++.|+.||.|... ++ ++++++||||.|.+.+++.+|+..|||+
T Consensus 86 as~---~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq 162 (203)
T KOG0131|consen 86 ASA---HQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQ 162 (203)
T ss_pred ccc---ccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccc
Confidence 872 22223334799999999999999999999999998652 33 2357889999999999999999999999
Q ss_pred eeCCceEEEEeccCCchh
Q 002123 423 DVAGKQIKLEASRPGGAR 440 (964)
Q Consensus 423 ~I~Gr~LkV~~A~~k~~r 440 (964)
.++.++|.|.++..+..+
T Consensus 163 ~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 163 YLCNRPITVSYAFKKDTK 180 (203)
T ss_pred hhcCCceEEEEEEecCCC
Confidence 999999999999876543
No 29
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.85 E-value=1.8e-21 Score=206.37 Aligned_cols=149 Identities=24% Similarity=0.397 Sum_probs=139.6
Q ss_pred cEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCCCCC
Q 002123 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSE 357 (964)
Q Consensus 278 rtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~~~ 357 (964)
-+|||+|||.++++.+|+.+|++||+|.+|.| -|.||||..+++..|+.||+.|+|.+|.|..|.|+-++.|.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI---vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs---- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI---VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS---- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee---ecccceEEeecccccHHHHhhcccceecceEEEEEeccccC----
Confidence 47999999999999999999999999999998 78899999999999999999999999999999999887653
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCC
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k 437 (964)
...++|+|+||.+.++.++|++.|++||.|.+|.|+ ++|+||.|...++|..|++.|++.++.|++++|+++..+
T Consensus 76 --k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv---kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 --KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV---KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred --CCccccccCCCCccccCHHHhhhhcccCCceeeeee---cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 346789999999999999999999999999999987 569999999999999999999999999999999998864
Q ss_pred c
Q 002123 438 G 438 (964)
Q Consensus 438 ~ 438 (964)
-
T Consensus 151 l 151 (346)
T KOG0109|consen 151 L 151 (346)
T ss_pred c
Confidence 3
No 30
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=1.5e-20 Score=196.36 Aligned_cols=162 Identities=23% Similarity=0.410 Sum_probs=145.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
....++|.|.=||.++|+|||+.+|...|+|++|++ +|.+.||+||.|-++++|++|+..|||..+..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 445689999999999999999999999999999974 899999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEec-----CCCCceEEEeeCCHHHHHHHHHHhCCce
Q 002123 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSD 423 (964)
Q Consensus 349 A~~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~-----~~skGfaFVeF~d~esA~kAL~~LNG~~ 423 (964)
|.|..+ .+...+|||.+||...|..||.++|++||.|..-+|. +-+||.|||.|...++|+.|++.|||..
T Consensus 118 ARPSs~----~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 118 ARPSSD----SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred ccCChh----hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 988654 3556799999999999999999999999998765553 3489999999999999999999999998
Q ss_pred eCC--ceEEEEeccCCch
Q 002123 424 VAG--KQIKLEASRPGGA 439 (964)
Q Consensus 424 I~G--r~LkV~~A~~k~~ 439 (964)
-.| .+|.|++|.....
T Consensus 194 P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNPSQ 211 (360)
T ss_pred CCCCCCCeEEEecCCccc
Confidence 755 6899999986543
No 31
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.79 E-value=1.8e-19 Score=202.62 Aligned_cols=161 Identities=17% Similarity=0.238 Sum_probs=127.0
Q ss_pred cCCCccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCC--hhhhhccCCCCeeeeecCCChhh
Q 002123 146 SSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSGVTDDMGHNFQANTVDD 222 (964)
Q Consensus 146 Ssl~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpd--EdDL~sG~SkGfGFV~f~~t~ed 222 (964)
++-.+|||++|++ ++++.|++. | ..+|.|... ..|..++.++|||||+ |.+.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~l--------------F--------~~~G~V~~v~i~~d~~tg~srGyaFVe-F~~~e~ 161 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYAL--------------F--------RTIGPINTCRIMRDYKTGYSFGYAFVD-FGSEAD 161 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHH--------------H--------HhcCCEEEEEEEecCCCCccCcEEEEE-EccHHH
Confidence 3567899999998 888899988 8 445554441 1344578899999999 557888
Q ss_pred hhhhHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCC
Q 002123 223 LEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFG 302 (964)
Q Consensus 223 aeei~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG 302 (964)
|+ +|+..++|.+|. ++.+.+..... .......++|||+|||.++|+++|+++|++||
T Consensus 162 A~--~Ai~~LnG~~l~-gr~i~V~~a~p--------------------~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG 218 (346)
T TIGR01659 162 SQ--RAIKNLNGITVR-NKRLKVSYARP--------------------GGESIKDTNLYVTNLPRTITDDQLDTIFGKYG 218 (346)
T ss_pred HH--HHHHHcCCCccC-Cceeeeecccc--------------------cccccccceeEEeCCCCcccHHHHHHHHHhcC
Confidence 78 899999999997 44333221100 01123457899999999999999999999999
Q ss_pred cEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccc--ccceeeecCCC
Q 002123 303 DIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIPK 352 (964)
Q Consensus 303 ~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~G--r~L~V~~A~~k 352 (964)
+|+.|++ ++++||||||+|.+.++|++||+.|+++.+.+ ++|.|.++...
T Consensus 219 ~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 219 QIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred CEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 9999875 67889999999999999999999999998876 68999988754
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=6.5e-19 Score=185.57 Aligned_cols=177 Identities=19% Similarity=0.295 Sum_probs=144.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCC
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 353 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~ 353 (964)
....+||||+||..++||+-|..||.+.|.|..|++ .|+ .|+|.|+....
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~----------i~~--------------------e~~v~wa~~p~ 52 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKV----------IFD--------------------ELKVNWATAPG 52 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhcccccccee----------ehh--------------------hhccccccCcc
Confidence 345799999999999999999999999999999887 121 56777776655
Q ss_pred CCCCccCC-cceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCc
Q 002123 354 NPSEKDAN-QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGK 427 (964)
Q Consensus 354 ~~~~~~~~-~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr 427 (964)
..+++... .-.+||+.|...++.|+|++.|.+||+|.++||+++ +||||||.|.+.++|+.||..|||..|++|
T Consensus 53 nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R 132 (321)
T KOG0148|consen 53 NQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR 132 (321)
T ss_pred cCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccc
Confidence 44444444 448999999999999999999999999999999764 899999999999999999999999999999
Q ss_pred eEEEEeccCCchhh-hcch-hhhhc-----ccCccc-CCCCCCCChhhc----ccCcceEEEecC
Q 002123 428 QIKLEASRPGGARR-FMVQ-SEQEQ-----DDLNLC-QIPFDDLSSGQM----VSSGVITSTCMD 480 (964)
Q Consensus 428 ~LkV~~A~~k~~r~-~~qq-~eq~q-----~E~nL~-kNLp~s~tee~L----s~fG~I~s~~~e 480 (964)
.|+-.||.+|..+. ..+. +++.- +...+| .|++.-++++.| ++||.|..++.-
T Consensus 133 ~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvF 197 (321)
T KOG0148|consen 133 TIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVF 197 (321)
T ss_pred eeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEe
Confidence 99999999887444 1111 22221 222445 888888888888 999999998653
No 33
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=5.2e-19 Score=191.42 Aligned_cols=160 Identities=19% Similarity=0.403 Sum_probs=142.4
Q ss_pred CcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCC
Q 002123 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (964)
Q Consensus 277 srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~ 351 (964)
-|+|||+.|.+++.|+.|+..|..||+|++|.+ ++++||||||+|+-+|.|+-|++.|||..+.||.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 489999999999999999999999999999975 899999999999999999999999999999999999986543
Q ss_pred CCCC-------CCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHh
Q 002123 352 KDNP-------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTL 419 (964)
Q Consensus 352 k~~~-------~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~L 419 (964)
-... .+....-..|||..+.++++++||+..|+.||+|.+|.+.+ ..||||||+|.+..+-..|+..|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 2221 11223456899999999999999999999999999999854 36899999999999999999999
Q ss_pred CCceeCCceEEEEeccC
Q 002123 420 NRSDVAGKQIKLEASRP 436 (964)
Q Consensus 420 NG~~I~Gr~LkV~~A~~ 436 (964)
|-..++|.-|+|..+..
T Consensus 273 NlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVT 289 (544)
T ss_pred chhhcccceEecccccC
Confidence 99999999999976653
No 34
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.76 E-value=2.4e-18 Score=199.96 Aligned_cols=162 Identities=25% Similarity=0.447 Sum_probs=142.7
Q ss_pred cEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCC--------ccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACK--------HRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 278 rtLFVgNLP~~vTEedLrelFs~fG~I~svkitgk--------sRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
++|||+||++++|.++|..+|...|.|.++.|..+ +.|||||+|.+.++|+.|++.|+|+.|+|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 45999999999999999999999999999977321 3499999999999999999999999999999999999
Q ss_pred CCCCCCC-----CccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHh
Q 002123 350 IPKDNPS-----EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTL 419 (964)
Q Consensus 350 ~~k~~~~-----~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~L 419 (964)
..+.... ......++|.|+|||+..+..+++++|..||.|.+|++..+ .+|||||+|-++++|.+|+.+|
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence 7322111 11122469999999999999999999999999999999765 5899999999999999999999
Q ss_pred CCceeCCceEEEEeccCCch
Q 002123 420 NRSDVAGKQIKLEASRPGGA 439 (964)
Q Consensus 420 NG~~I~Gr~LkV~~A~~k~~ 439 (964)
..+.+.||+|.++||.....
T Consensus 676 ~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred cccceechhhheehhccchH
Confidence 99999999999999998764
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.74 E-value=2.6e-18 Score=195.41 Aligned_cols=223 Identities=19% Similarity=0.257 Sum_probs=157.9
Q ss_pred hhhccCCCCeeeeecCCChhhhhhhHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEE
Q 002123 202 DLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLF 281 (964)
Q Consensus 202 DL~sG~SkGfGFV~f~~t~edaeei~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLF 281 (964)
|-.++.++|.+||+|. +.+.+- .+| .+.|..+-|-. +.| ..+...+|...+.+ ...+...-..+...||
T Consensus 214 Dr~s~rskgi~Yvef~-D~~sVp--~ai-aLsGqrllg~p-v~v-----q~sEaeknr~a~~s-~a~~~k~~~~p~~rl~ 282 (549)
T KOG0147|consen 214 DRNSRRSKGIAYVEFC-DEQSVP--LAI-ALSGQRLLGVP-VIV-----QLSEAEKNRAANAS-PALQGKGFTGPMRRLY 282 (549)
T ss_pred cccchhhcceeEEEEe-cccchh--hHh-hhcCCcccCce-eEe-----cccHHHHHHHHhcc-ccccccccccchhhhh
Confidence 3457889999999976 444444 344 34455443232 111 11111112111100 0001011223444499
Q ss_pred EecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCCCC
Q 002123 282 VRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPS 356 (964)
Q Consensus 282 VgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~~ 356 (964)
|+||-.+++|++|+.+|+.||+|..|.+ +|.++|||||+|.+.++|++|++.|||.+|.|+.|+|.....+.+..
T Consensus 283 vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~ 362 (549)
T KOG0147|consen 283 VGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTK 362 (549)
T ss_pred hcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccc
Confidence 9999999999999999999999999864 79999999999999999999999999999999999985432110000
Q ss_pred --------------------------------------------------------------------Ccc-------CC
Q 002123 357 --------------------------------------------------------------------EKD-------AN 361 (964)
Q Consensus 357 --------------------------------------------------------------------~~~-------~~ 361 (964)
.+. ..
T Consensus 363 ~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~ 442 (549)
T KOG0147|consen 363 EAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIP 442 (549)
T ss_pred cccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCc
Confidence 000 22
Q ss_pred cceEEEecc--CCCCc--------HHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEE
Q 002123 362 QGTLVVFNL--DSSVS--------TEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL 431 (964)
Q Consensus 362 ~~tLfV~NL--p~~vT--------eedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV 431 (964)
..++.++|+ |...| .||+.+.+.+||.|..|.|.+.+-|+.||.|.+.++|..|+++|||..++||.|.+
T Consensus 443 t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita 522 (549)
T KOG0147|consen 443 TQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITA 522 (549)
T ss_pred cHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEE
Confidence 345566665 22222 37888999999999999999998999999999999999999999999999999999
Q ss_pred Eecc
Q 002123 432 EASR 435 (964)
Q Consensus 432 ~~A~ 435 (964)
.+-.
T Consensus 523 ~~~~ 526 (549)
T KOG0147|consen 523 KYLP 526 (549)
T ss_pred EEee
Confidence 8754
No 36
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=7.7e-18 Score=176.78 Aligned_cols=165 Identities=21% Similarity=0.399 Sum_probs=143.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCC-cccc--ccceeee
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNK-PLRR--RKLDIHY 348 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~-~i~G--r~L~V~~ 348 (964)
..++|||+-|...-.|||++.+|..||.|.+|.+ .+.+||+|||.|.+..+|+.||..|+|. .+.| ..|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 6799999999999999999999999999999976 6889999999999999999999999995 4555 6788888
Q ss_pred cCCCCCCC------------------------------------------------------------------------
Q 002123 349 SIPKDNPS------------------------------------------------------------------------ 356 (964)
Q Consensus 349 A~~k~~~~------------------------------------------------------------------------ 356 (964)
++..+++.
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 76543210
Q ss_pred --------------------------------------------------------------------------------
Q 002123 357 -------------------------------------------------------------------------------- 356 (964)
Q Consensus 357 -------------------------------------------------------------------------------- 356 (964)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred ----------------------CccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCH
Q 002123 357 ----------------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDI 409 (964)
Q Consensus 357 ----------------------~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~ 409 (964)
......++|||..||.+..+.||.++|-+||.|.+.++.- .+|.||||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 0000136999999999999999999999999999988753 4899999999999
Q ss_pred HHHHHHHHHhCCceeCCceEEEEeccCCchh
Q 002123 410 RAAETALRTLNRSDVAGKQIKLEASRPGGAR 440 (964)
Q Consensus 410 esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~r 440 (964)
.+|+.||.+|||..|+=|+|+|.+.+||.+.
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 9999999999999999999999999998754
No 37
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.72 E-value=1e-16 Score=166.54 Aligned_cols=163 Identities=26% Similarity=0.454 Sum_probs=144.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHH----hhccCCcEEEEEe--cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKA----LFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLre----lFs~fG~I~svki--tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
...++.||||.||+..+..++|+. +|++||+|.+|.. +.+.||.|||.|.+.+.|-.|+++|+|..+.|++++|
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 345566999999999999999998 9999999999976 7899999999999999999999999999999999999
Q ss_pred eecCCCCCCCCc----------------------------------------------cCCcceEEEeccCCCCcHHHHH
Q 002123 347 HYSIPKDNPSEK----------------------------------------------DANQGTLVVFNLDSSVSTEELH 380 (964)
Q Consensus 347 ~~A~~k~~~~~~----------------------------------------------~~~~~tLfV~NLp~~vTeedLr 380 (964)
+||..+.+...+ ..+...|++.|||..++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 999765432110 1234589999999999999999
Q ss_pred HHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeC-CceEEEEecc
Q 002123 381 QIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVA-GKQIKLEASR 435 (964)
Q Consensus 381 elFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~-Gr~LkV~~A~ 435 (964)
.+|.+|...++|+++...++.|||+|.+...|..|...+.+..|. ...++|.+++
T Consensus 165 ~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999999888999999999999999999999999886 7788887764
No 38
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.69 E-value=4.9e-17 Score=179.28 Aligned_cols=164 Identities=15% Similarity=0.343 Sum_probs=145.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
..++|||++|+++++++.|++.|.+||+|.+|.+ ++++|||+||+|.+.+...++|. ...+.|.|+.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 6799999999999999999999999999999975 78999999999999999999985 55678999999999999
Q ss_pred CCCCCCCccC--CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHhCCce
Q 002123 351 PKDNPSEKDA--NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSD 423 (964)
Q Consensus 351 ~k~~~~~~~~--~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~LNG~~ 423 (964)
++.+..+... ...+|||+.|+.++++++|++.|.+||.|..+.++- +.++|+||.|.+++++.+++. ..-..
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 8876544333 356999999999999999999999999988876653 378999999999999999988 77889
Q ss_pred eCCceEEEEeccCCchhh
Q 002123 424 VAGKQIKLEASRPGGARR 441 (964)
Q Consensus 424 I~Gr~LkV~~A~~k~~r~ 441 (964)
|.|+.+.|..|.|++...
T Consensus 163 ~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred ecCceeeEeeccchhhcc
Confidence 999999999999987543
No 39
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=3.4e-16 Score=169.80 Aligned_cols=252 Identities=14% Similarity=0.285 Sum_probs=184.5
Q ss_pred CCccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCC-C-hhhhhccCCCCeeeeecCCChhhhh
Q 002123 148 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP-D-EDDLFSGVTDDMGHNFQANTVDDLE 224 (964)
Q Consensus 148 l~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILp-d-EdDL~sG~SkGfGFV~f~~t~edae 224 (964)
+..|+|+.+.+ +.++.+... | ..||-|-+ + -=|-.++..|||+||+ ++-.|++.
T Consensus 113 McRvYVGSIsfEl~EDtiR~A--------------F--------~PFGPIKSInMSWDp~T~kHKgFAFVE-YEvPEaAq 169 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRA--------------F--------DPFGPIKSINMSWDPATGKHKGFAFVE-YEVPEAAQ 169 (544)
T ss_pred hHheeeeeeEEEechHHHHhh--------------c--------cCCCCcceeecccccccccccceEEEE-EeCcHHHH
Confidence 45688888876 666556555 5 44565555 1 1244589999999999 55777777
Q ss_pred hhHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcE
Q 002123 225 DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDI 304 (964)
Q Consensus 225 ei~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I 304 (964)
-+.+.|||..|. .+.+.|++-- |.... -.+-.+...+.+...+|||..+-++..|+||+..|+.||+|
T Consensus 170 --LAlEqMNg~mlG-GRNiKVgrPs--------NmpQA-QpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I 237 (544)
T KOG0124|consen 170 --LALEQMNGQMLG-GRNIKVGRPS--------NMPQA-QPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEI 237 (544)
T ss_pred --HHHHHhcccccc-CccccccCCC--------CCccc-chHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcce
Confidence 899999999996 5555554311 00000 00000111244567899999999999999999999999999
Q ss_pred EEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCCC------------------------
Q 002123 305 RTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP------------------------ 355 (964)
Q Consensus 305 ~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~------------------------ 355 (964)
+.|.+ .+.+||||||+|.+..+...|+..||-..+.|.-|+|..+....+.
T Consensus 238 ~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAK 317 (544)
T KOG0124|consen 238 VKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAK 317 (544)
T ss_pred eeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHH
Confidence 99986 4779999999999999999999999999999998888543211000
Q ss_pred --------------------------------------------------------------------------------
Q 002123 356 -------------------------------------------------------------------------------- 355 (964)
Q Consensus 356 -------------------------------------------------------------------------------- 355 (964)
T Consensus 318 i~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~ 397 (544)
T KOG0124|consen 318 IMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGL 397 (544)
T ss_pred HHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhh
Confidence
Q ss_pred ----CC--------------------------------------ccCCcceEEEecc--CCCCc---HHHHHHHhhccCc
Q 002123 356 ----SE--------------------------------------KDANQGTLVVFNL--DSSVS---TEELHQIFGIYGE 388 (964)
Q Consensus 356 ----~~--------------------------------------~~~~~~tLfV~NL--p~~vT---eedLrelFs~fG~ 388 (964)
.+ +....+.|.++|+ |.+++ +.+|++.|++||.
T Consensus 398 L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~ 477 (544)
T KOG0124|consen 398 LEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGA 477 (544)
T ss_pred cchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccc
Confidence 00 0002356788887 56665 5789999999999
Q ss_pred eEEEEecCCCCc---------eEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 389 IREIRDTQHKHN---------HKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 389 I~sIri~~~skG---------faFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
|.+|.|.....+ .-||+|....++.+|+++|+|+.++|+++..+..
T Consensus 478 V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 478 VNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred eeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehhhh
Confidence 999887643222 3699999999999999999999999999887654
No 40
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=8.2e-16 Score=179.09 Aligned_cols=217 Identities=21% Similarity=0.334 Sum_probs=167.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccc-eEEEEeCCHHHHHHHHHHccCCccccccceeeecCC
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRG-FVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRG-faFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~ 351 (964)
.+...+.|+|+|||..+..++|..+|..||+|..+-+. .-| -++|.|.+..+|++|++.|.+..+...++++.|+..
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~ 458 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPE 458 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--cccceeeeeecCccchHHHHHHhchhhhccCccccccChh
Confidence 45566899999999999999999999999999999664 333 599999999999999999999999988888877521
Q ss_pred -------CCC-------------CC------------Ccc--------------CCcceEEEeccCCCCcHHHHHHHhhc
Q 002123 352 -------KDN-------------PS------------EKD--------------ANQGTLVVFNLDSSVSTEELHQIFGI 385 (964)
Q Consensus 352 -------k~~-------------~~------------~~~--------------~~~~tLfV~NLp~~vTeedLrelFs~ 385 (964)
+.. .. .++ ...++|||+||+++++.++|...|.+
T Consensus 459 dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k 538 (725)
T KOG0110|consen 459 DVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSK 538 (725)
T ss_pred hhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHh
Confidence 100 00 000 01234999999999999999999999
Q ss_pred cCceEEEEecCC--------CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCchhhhcch-hhhhcccCccc
Q 002123 386 YGEIREIRDTQH--------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQ-SEQEQDDLNLC 456 (964)
Q Consensus 386 fG~I~sIri~~~--------skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~r~~~qq-~eq~q~E~nL~ 456 (964)
+|.|.+|.|..+ +.|||||+|.+.++|+.|++.|+|+.|+|+.|.|+++..+.......+ .......+=|.
T Consensus 539 ~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlV 618 (725)
T KOG0110|consen 539 QGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILV 618 (725)
T ss_pred cCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeee
Confidence 999999977543 349999999999999999999999999999999999983322221111 11111222333
Q ss_pred CCCCCCCChhhc----ccCcceEEEecC----CCCccee-ecCC
Q 002123 457 QIPFDDLSSGQM----VSSGVITSTCMD----NGSIQVL-HSAT 491 (964)
Q Consensus 457 kNLp~s~tee~L----s~fG~I~s~~~e----nG~~rGf-~s~~ 491 (964)
+|+|..++...+ ..||.|.+++.. -+.+||| |.-+
T Consensus 619 RNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f 662 (725)
T KOG0110|consen 619 RNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDF 662 (725)
T ss_pred eccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeec
Confidence 999999998887 899999999554 3456776 4433
No 41
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.61 E-value=3.8e-16 Score=177.96 Aligned_cols=164 Identities=23% Similarity=0.370 Sum_probs=142.9
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
.+++.-++||+-.|+..++.-+|.++|+.+|+|..|++ ++.++|.|||+|.|.+....|| .|.|+.+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEe
Confidence 45667799999999999999999999999999999975 6789999999999999999999 59999999999999
Q ss_pred eecCCCCCCCCc----------cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHH
Q 002123 347 HYSIPKDNPSEK----------DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRA 411 (964)
Q Consensus 347 ~~A~~k~~~~~~----------~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~es 411 (964)
+......+.... ..+-..|||+||..++++++|+.+|++||.|+.|.++.+ ++|||||+|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 877544332110 111223999999999999999999999999999988654 79999999999999
Q ss_pred HHHHHHHhCCceeCCceEEEEeccC
Q 002123 412 AETALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 412 A~kAL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
|.+|+..|||.+|.|+.|+|.....
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeee
Confidence 9999999999999999999987654
No 42
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=1.9e-14 Score=145.03 Aligned_cols=156 Identities=19% Similarity=0.302 Sum_probs=131.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCC--ccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACK--HRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgk--sRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
..+++|||+|||.++-|.+|.++|-+||.|..|.+... .-+||||+|++..+|+.||..-+|..+.|..|+|.++..-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 35689999999999999999999999999999987433 3479999999999999999999999999999999998643
Q ss_pred CCC----------------------CCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHH
Q 002123 353 DNP----------------------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIR 410 (964)
Q Consensus 353 ~~~----------------------~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~e 410 (964)
... ......+..+.|..||++-+++||++++.+-|.|....+.++ +++.|+|...|
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD--g~GvV~~~r~e 161 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD--GVGVVEYLRKE 161 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc--cceeeeeeehh
Confidence 210 111234568999999999999999999999999998887765 59999999999
Q ss_pred HHHHHHHHhCCcee--CCceEEEE
Q 002123 411 AAETALRTLNRSDV--AGKQIKLE 432 (964)
Q Consensus 411 sA~kAL~~LNG~~I--~Gr~LkV~ 432 (964)
+.+-|++.|....+ .|....+.
T Consensus 162 DMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 162 DMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred hHHHHHHhhccccccCcCcEeeEE
Confidence 99999999987765 34444443
No 43
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.57 E-value=1.3e-15 Score=162.06 Aligned_cols=148 Identities=18% Similarity=0.328 Sum_probs=123.3
Q ss_pred CccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 002123 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 227 (964)
Q Consensus 149 ~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpdEdDL~sG~SkGfGFV~f~~t~edaeei~ 227 (964)
.+|||+||+. .+.++|... | +.+|.+|-.+ +.|.||||+ -++.++++ +
T Consensus 3 ~KLFIGNLp~~~~~~elr~l--------------F--------e~ygkVlECD------IvKNYgFVH-iEdktaae--d 51 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSL--------------F--------EQYGKVLECD------IVKNYGFVH-IEDKTAAE--D 51 (346)
T ss_pred cchhccCCCcccchHHHHHH--------------H--------HhhCceEeee------eecccceEE-eecccccH--H
Confidence 4799999986 888787777 8 7788777633 267899999 44666667 8
Q ss_pred HHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEE
Q 002123 228 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI 307 (964)
Q Consensus 228 ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~sv 307 (964)
+|.+++|..|+ ...++|...+. +...+++|+|+||.+.++..||++.|++||+|.+|
T Consensus 52 airNLhgYtLh-g~nInVeaSks----------------------Ksk~stkl~vgNis~tctn~ElRa~fe~ygpviec 108 (346)
T KOG0109|consen 52 AIRNLHGYTLH-GVNINVEASKS----------------------KSKASTKLHVGNISPTCTNQELRAKFEKYGPVIEC 108 (346)
T ss_pred HHhhcccceec-ceEEEEEeccc----------------------cCCCccccccCCCCccccCHHHhhhhcccCCceee
Confidence 99999999998 33333322211 24568999999999999999999999999999999
Q ss_pred EecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCC
Q 002123 308 YTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 353 (964)
Q Consensus 308 kitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~ 353 (964)
++ -|+|+||.|.-.++|..|++.|++.++.|++++|+.+..+-
T Consensus 109 di---vkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 109 DI---VKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred ee---ecceeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 98 78999999999999999999999999999999999987653
No 44
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.49 E-value=7.2e-13 Score=147.11 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=67.2
Q ss_pred ceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
++|+|+|||.++|+..|++-|..||.|.++.|+...+..+.|.|.++++|+.|+..|+|..+.|+.|+|.+.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 689999999999999999999999999999987666666799999999999999999999999999999874
No 45
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.48 E-value=1.4e-13 Score=137.18 Aligned_cols=82 Identities=23% Similarity=0.416 Sum_probs=75.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
.....++|||+|||+++||++|+++|++||+|.+|++ ++++||||||+|.+.++|++|++.|+++.|.|++|+|+
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4556789999999999999999999999999999976 67899999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 002123 348 YSIPKDN 354 (964)
Q Consensus 348 ~A~~k~~ 354 (964)
++.++..
T Consensus 110 ~a~~~~~ 116 (144)
T PLN03134 110 PANDRPS 116 (144)
T ss_pred eCCcCCC
Confidence 9976644
No 46
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=3.1e-14 Score=149.21 Aligned_cols=151 Identities=23% Similarity=0.399 Sum_probs=131.8
Q ss_pred cEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCCC--
Q 002123 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP-- 355 (964)
Q Consensus 278 rtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~-- 355 (964)
..|||++||+.+.+.+|..+|..||.|..+.+ ..||+||+|.+..+|..|+..+++++|.|..+.|.++..+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccC
Confidence 46999999999999999999999999999988 6789999999999999999999999999988999998743110
Q ss_pred --------------CCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCC
Q 002123 356 --------------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR 421 (964)
Q Consensus 356 --------------~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG 421 (964)
.........|+|.|+...+.+.+|.+.|.++|.+..... ..+++||+|+..++|.+|+..|++
T Consensus 79 ~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 79 RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccc
Confidence 011234568999999999999999999999999965544 578999999999999999999999
Q ss_pred ceeCCceEEEEec
Q 002123 422 SDVAGKQIKLEAS 434 (964)
Q Consensus 422 ~~I~Gr~LkV~~A 434 (964)
..+.++.|.+...
T Consensus 156 ~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 156 KKLNGRRISVEKN 168 (216)
T ss_pred hhhcCceeeeccc
Confidence 9999999999433
No 47
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.45 E-value=1.5e-12 Score=141.86 Aligned_cols=166 Identities=16% Similarity=0.230 Sum_probs=137.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEE--------Ee----cCCccceEEEEeCCHHHHHHHHHHccCCccc
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI--------YT----ACKHRGFVMISYYDIRAARNAMKALQNKPLR 340 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~sv--------ki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~ 340 (964)
....++.|||.|||.++|.+++.++|++||-|..- ++ .|+.+|=|.+.|-..++++-|++.|++..+.
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 34567889999999999999999999999987642 22 6889999999999999999999999999999
Q ss_pred cccceeeecCCCC----------C------------------------CCCccCCcceEEEeccC----CCCc-------
Q 002123 341 RRKLDIHYSIPKD----------N------------------------PSEKDANQGTLVVFNLD----SSVS------- 375 (964)
Q Consensus 341 Gr~L~V~~A~~k~----------~------------------------~~~~~~~~~tLfV~NLp----~~vT------- 375 (964)
|++|+|..|.-.. . ...+....++|.++|+= ...+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 9999998774210 0 01122345699999982 1222
Q ss_pred HHHHHHHhhccCceEEEEec-CCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCc
Q 002123 376 TEELHQIFGIYGEIREIRDT-QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (964)
Q Consensus 376 eedLrelFs~fG~I~sIri~-~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~ 438 (964)
.++|++.+.+||.|.+|.|. +...|.+-|.|.+.++|..|++.|+|+.++||.|.......+.
T Consensus 290 kedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 57788899999999999886 4578999999999999999999999999999999998876554
No 48
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.41 E-value=7.7e-13 Score=132.00 Aligned_cols=78 Identities=17% Similarity=0.351 Sum_probs=72.2
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEecc
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (964)
..++|||+||+..+++++|+++|++||.|++|+++. ++++||||+|.+.++|++|++.||+..|+|++|+|+++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 456899999999999999999999999999998864 368999999999999999999999999999999999998
Q ss_pred CCc
Q 002123 436 PGG 438 (964)
Q Consensus 436 ~k~ 438 (964)
++.
T Consensus 113 ~~~ 115 (144)
T PLN03134 113 DRP 115 (144)
T ss_pred cCC
Confidence 654
No 49
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.39 E-value=1.9e-13 Score=137.94 Aligned_cols=165 Identities=19% Similarity=0.289 Sum_probs=126.2
Q ss_pred CCCccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCC--ChhhhhccCCCCeeeeecCCChhhh
Q 002123 147 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP--DEDDLFSGVTDDMGHNFQANTVDDL 223 (964)
Q Consensus 147 sl~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILp--dEdDL~sG~SkGfGFV~f~~t~eda 223 (964)
+-..||++||+. ++..-|++. | -..|-++. --+|..+...+|||||+ |.++|++
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL--------------~--------iqagpVv~i~iPkDrv~~~~qGygF~E-f~~eeda 64 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYEL--------------F--------IQAGPVVNLHIPKDRVTQKHQGYGFAE-FRTEEDA 64 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHH--------------H--------HhcCceeeeecchhhhcccccceeEEE-Eechhhh
Confidence 446799999986 777678777 6 45555544 22334455789999999 5588888
Q ss_pred hhhHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCc
Q 002123 224 EDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD 303 (964)
Q Consensus 224 eei~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~ 303 (964)
+ -||.-+|+..|.|+. +.|.++ . .....-....+|||+||.++++|..|.++|+.||.
T Consensus 65 d--YAikiln~VkLYgrp-Irv~ka----------------s---~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~ 122 (203)
T KOG0131|consen 65 D--YAIKILNMVKLYGRP-IRVNKA----------------S---AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGV 122 (203)
T ss_pred H--HHHHHHHHHHhcCce-eEEEec----------------c---cccccccccccccccccCcchhHHHHHHHHHhccc
Confidence 8 888888877887443 222111 0 11112233489999999999999999999999999
Q ss_pred EEEE----E--ecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCCCC
Q 002123 304 IRTI----Y--TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPS 356 (964)
Q Consensus 304 I~sv----k--itgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~~ 356 (964)
|... + .+++.+|||||.|.+.+++.+|+..|+|+.+..+++.|.++..+....
T Consensus 123 l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 123 LISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred cccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 8763 2 378999999999999999999999999999999999999998766544
No 50
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.35 E-value=5.9e-13 Score=147.22 Aligned_cols=197 Identities=17% Similarity=0.267 Sum_probs=131.1
Q ss_pred CCCccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCC--ChhhhhccCCCCeeeeecCCChhhh
Q 002123 147 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP--DEDDLFSGVTDDMGHNFQANTVDDL 223 (964)
Q Consensus 147 sl~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILp--dEdDL~sG~SkGfGFV~f~~t~eda 223 (964)
...+||+++|+| ++.+.|.++ | .-+|+++- ...|..+++++|||||+|.+ .+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~y--------------f--------~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~-~~~v 61 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREY--------------F--------SQFGEVTDCVVMRDPSTGRSRGFGFVTFAT-PEGV 61 (311)
T ss_pred CCcceeecCcCccccHHHHHHH--------------h--------cccCceeeEEEeccCCCCCcccccceecCC-Ccch
Confidence 557899999999 888889988 7 44444444 23456679999999999663 3333
Q ss_pred hhhHHH----hccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhc
Q 002123 224 EDFDLF----SSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFE 299 (964)
Q Consensus 224 eei~ai----~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs 299 (964)
. .++ ....|..++.. +... +.............+|||++||.++++++|+++|+
T Consensus 62 ~--~vl~~~~h~~dgr~ve~k------~av~--------------r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe 119 (311)
T KOG4205|consen 62 D--AVLNARTHKLDGRSVEPK------RAVS--------------REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFE 119 (311)
T ss_pred h--eeecccccccCCccccce------eccC--------------cccccccccccceeEEEecCcCCCCchHHHhhhhh
Confidence 3 121 12223322211 1111 01111111222578999999999999999999999
Q ss_pred cCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCCCCCccCCc-ceEEEeccCCC
Q 002123 300 QFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQ-GTLVVFNLDSS 373 (964)
Q Consensus 300 ~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~~~~~~~~-~tLfV~NLp~~ 373 (964)
+||.|..+.+ +.+.|||+||.|.+++++++++. ...+.|.++.+.|+.|.|++......... ......|+...
T Consensus 120 ~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~~~~~~~~~~~~~~~~g~~ 198 (311)
T KOG4205|consen 120 QFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQSTKSSVSTRGKGNNLGNG 198 (311)
T ss_pred ccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhcccccccccccccccccccc
Confidence 9998887753 67899999999999999999996 78889999999999999987654322211 12222244444
Q ss_pred CcHHHHHHHhhccCce
Q 002123 374 VSTEELHQIFGIYGEI 389 (964)
Q Consensus 374 vTeedLrelFs~fG~I 389 (964)
.+.-.|...|.-|+.+
T Consensus 199 ~~~~~l~~~~~g~~~~ 214 (311)
T KOG4205|consen 199 RTGFFLKKYFKGYGPV 214 (311)
T ss_pred ccccccchhccccCcc
Confidence 4444455555555544
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.33 E-value=2.6e-12 Score=109.80 Aligned_cols=66 Identities=30% Similarity=0.616 Sum_probs=62.2
Q ss_pred EEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccce
Q 002123 280 LFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (964)
Q Consensus 280 LFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~ 345 (964)
|||+|||+++|+++|+++|++||.|..+.+ +++.+|||||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999876 467899999999999999999999999999999875
No 52
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.33 E-value=7.9e-12 Score=130.05 Aligned_cols=120 Identities=28% Similarity=0.451 Sum_probs=103.7
Q ss_pred CcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC-
Q 002123 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI- 350 (964)
Q Consensus 277 srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~- 350 (964)
.++|||+|||.++|+++|+++|.+||.|..+.+ +++++|||||.|.+.++|..|++.+++..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 799999999999999999999999999988865 68999999999999999999999999999999999999954
Q ss_pred ---CCCCCC----------------CccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC
Q 002123 351 ---PKDNPS----------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ 396 (964)
Q Consensus 351 ---~k~~~~----------------~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~ 396 (964)
++.... ........+++.|++..++..++...|..+|.+..+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPP 259 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccC
Confidence 222221 0112346899999999999999999999999997776654
No 53
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.33 E-value=8.4e-12 Score=129.26 Aligned_cols=150 Identities=23% Similarity=0.321 Sum_probs=118.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEE--EecCCc----cceEEEEeCCHHHHHHHHHHccCCccc---cccce
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTI--YTACKH----RGFVMISYYDIRAARNAMKALQNKPLR---RRKLD 345 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~sv--kitgks----RGfaFV~F~d~esA~kAl~~Lng~~i~---Gr~L~ 345 (964)
..-|||||.+||.++...||..+|..|---+.+ +.+.+. +-+|||+|.+...|..|+.+|||..|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 346999999999999999999999998655554 344443 479999999999999999999999876 57788
Q ss_pred eeecCCCCCCC---------------------------------------------------Ccc---------------
Q 002123 346 IHYSIPKDNPS---------------------------------------------------EKD--------------- 359 (964)
Q Consensus 346 V~~A~~k~~~~---------------------------------------------------~~~--------------- 359 (964)
|+++....... +.+
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 87764211000 000
Q ss_pred ----------------CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-CCceEEEeeCCHHHHHHHHHHhCCc
Q 002123 360 ----------------ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-KHNHKFIEFYDIRAAETALRTLNRS 422 (964)
Q Consensus 360 ----------------~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-skGfaFVeF~d~esA~kAL~~LNG~ 422 (964)
....||||-||..+|+|++|+.+|+.|--...++|..+ ....|||+|++.+.|..|+..|.|.
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcc
Confidence 01248999999999999999999999977666666433 3347999999999999999999998
Q ss_pred ee
Q 002123 423 DV 424 (964)
Q Consensus 423 ~I 424 (964)
.|
T Consensus 272 ~~ 273 (284)
T KOG1457|consen 272 LL 273 (284)
T ss_pred ee
Confidence 76
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.31 E-value=5e-12 Score=108.02 Aligned_cols=66 Identities=35% Similarity=0.563 Sum_probs=62.3
Q ss_pred EEEeccCCCCcHHHHHHHhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEE
Q 002123 365 LVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (964)
Q Consensus 365 LfV~NLp~~vTeedLrelFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~Lk 430 (964)
|||+|||.++++++|+++|++||.|..+++..+ .+++|||+|.+.++|++|++.|+|..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999988763 678999999999999999999999999999985
No 55
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.30 E-value=3.4e-11 Score=134.05 Aligned_cols=160 Identities=20% Similarity=0.356 Sum_probs=132.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhc-cCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFE-QFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs-~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
...|.+||.|||+++...+|+++|. +.|+|..|.+ .+|.||+|.|+|+++|.+++|++.||.+.+.||+|.|+-.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 3457799999999999999999997 7899999975 8999999999999999999999999999999999999532
Q ss_pred CCCC-----------------------------------------------CCCC-------------------------
Q 002123 350 IPKD-----------------------------------------------NPSE------------------------- 357 (964)
Q Consensus 350 ~~k~-----------------------------------------------~~~~------------------------- 357 (964)
...+ ++..
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 1100 0000
Q ss_pred ---------ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEe----cCCCCceEEEeeCCHHHHHHHHHHhCCcee
Q 002123 358 ---------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDV 424 (964)
Q Consensus 358 ---------~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri----~~~skGfaFVeF~d~esA~kAL~~LNG~~I 424 (964)
...-..++||.||...+..+.|++.|.-.|.|+.|.+ ...++||+.++|..+-+|..||..|++.-+
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~ 281 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGL 281 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCC
Confidence 0011347899999999999999999999999988754 345889999999999999999999998777
Q ss_pred CCceEEEEec
Q 002123 425 AGKQIKLEAS 434 (964)
Q Consensus 425 ~Gr~LkV~~A 434 (964)
..++..+.+.
T Consensus 282 ~~~~~~~Rl~ 291 (608)
T KOG4212|consen 282 FDRRMTVRLD 291 (608)
T ss_pred ccccceeecc
Confidence 7777776653
No 56
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.29 E-value=2.2e-11 Score=137.99 Aligned_cols=163 Identities=17% Similarity=0.265 Sum_probs=129.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEE---EecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTI---YTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~sv---kitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
...-|-+++|||++|++||.++|+.|+ |+.+ +.+++..|=|||+|.+.+++++|++ .+...+..|-|.|--+..+
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 345677899999999999999999987 4444 3479999999999999999999997 7777888888988776554
Q ss_pred CCCC-------CccCCcceEEEeccCCCCcHHHHHHHhhccCceEE-EEecC----CCCceEEEeeCCHHHHHHHHHHhC
Q 002123 353 DNPS-------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE-IRDTQ----HKHNHKFIEFYDIRAAETALRTLN 420 (964)
Q Consensus 353 ~~~~-------~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~s-Iri~~----~skGfaFVeF~d~esA~kAL~~LN 420 (964)
+..- ........|-++.||+.|+++||.++|+..-.|.. |.++. ++.|-|||+|++.+.|++||. -|
T Consensus 87 e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rh 165 (510)
T KOG4211|consen 87 EADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RH 165 (510)
T ss_pred cccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HH
Confidence 3321 11135668999999999999999999998655544 43332 245679999999999999998 67
Q ss_pred CceeCCceEEEEeccCCchhh
Q 002123 421 RSDVAGKQIKLEASRPGGARR 441 (964)
Q Consensus 421 G~~I~Gr~LkV~~A~~k~~r~ 441 (964)
...|+-|-|.|-.+...+.++
T Consensus 166 re~iGhRYIEvF~Ss~~e~~~ 186 (510)
T KOG4211|consen 166 RENIGHRYIEVFRSSRAEVKR 186 (510)
T ss_pred HHhhccceEEeehhHHHHHHh
Confidence 888999999998876655433
No 57
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=2.3e-11 Score=140.89 Aligned_cols=164 Identities=17% Similarity=0.330 Sum_probs=131.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
......++||++||..+++++++++...||+++...+ ++-++||||.+|.+......|+..|||..+.+++|.|.
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 4445689999999999999999999999999987754 57899999999999999999999999999999999999
Q ss_pred ecCCCCCCCC--------------------ccCCcceEEEecc--CCCC-c-------HHHHHHHhhccCceEEEEecCC
Q 002123 348 YSIPKDNPSE--------------------KDANQGTLVVFNL--DSSV-S-------TEELHQIFGIYGEIREIRDTQH 397 (964)
Q Consensus 348 ~A~~k~~~~~--------------------~~~~~~tLfV~NL--p~~v-T-------eedLrelFs~fG~I~sIri~~~ 397 (964)
.|........ .......|.+.|+ +.++ + -|+++..|.+||.|.+|.+...
T Consensus 365 ~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 365 RAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRP 444 (500)
T ss_pred hhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCC
Confidence 8865432111 0112334444444 1111 1 1567778899999999998653
Q ss_pred --------CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 002123 398 --------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 398 --------skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
..|..||+|.+.+++++|+++|+|..++||+|...|...
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 356789999999999999999999999999999998764
No 58
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.28 E-value=4.6e-11 Score=132.47 Aligned_cols=164 Identities=24% Similarity=0.408 Sum_probs=134.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccc-eEEEEeCCHHHHHHHHHHccCCcccc--ccceeeecCC
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRG-FVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIP 351 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRG-faFV~F~d~esA~kAl~~Lng~~i~G--r~L~V~~A~~ 351 (964)
.+--+++|.|+-.-++-|-|..+|++||.|..|..-.|+.| .|.|+|.|.+.|+.|..+|+|+.|.. +.|+|+|+.-
T Consensus 148 n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 148 NPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred ceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 34467889999999999999999999999998876445555 59999999999999999999997754 6677766521
Q ss_pred ----------CCCC--------C---------------------------------------CccCC--cceEEEeccC-
Q 002123 352 ----------KDNP--------S---------------------------------------EKDAN--QGTLVVFNLD- 371 (964)
Q Consensus 352 ----------k~~~--------~---------------------------------------~~~~~--~~tLfV~NLp- 371 (964)
|... . +-... ...|.|.||.
T Consensus 228 t~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~ 307 (492)
T KOG1190|consen 228 TDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNE 307 (492)
T ss_pred ccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCch
Confidence 1100 0 00001 3578888885
Q ss_pred CCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCc
Q 002123 372 SSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (964)
Q Consensus 372 ~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~ 438 (964)
..+|.+.|..+|+.||+|.+|+|..+++.-|.|+|.|...|+-|++.|+|..+.||+|+|.+++-..
T Consensus 308 ~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred hccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 6799999999999999999999998888999999999999999999999999999999999997543
No 59
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=1.7e-11 Score=132.98 Aligned_cols=89 Identities=21% Similarity=0.389 Sum_probs=78.5
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe---cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 271 ~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki---tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
.......++|+|.|||+..-|-||+.+|++||+|.+|.| ..-+||||||+|++.++|++|-++|+|..|.||+|.|.
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 344556689999999999999999999999999999976 56699999999999999999999999999999999999
Q ss_pred ecCCCCCCCCcc
Q 002123 348 YSIPKDNPSEKD 359 (964)
Q Consensus 348 ~A~~k~~~~~~~ 359 (964)
.+..+-...++.
T Consensus 170 ~ATarV~n~K~~ 181 (376)
T KOG0125|consen 170 NATARVHNKKKK 181 (376)
T ss_pred ccchhhccCCcc
Confidence 998765444433
No 60
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=2.3e-11 Score=122.45 Aligned_cols=77 Identities=32% Similarity=0.496 Sum_probs=73.2
Q ss_pred cceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCc
Q 002123 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (964)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~ 438 (964)
.++|||+||+..+++.||..+|..||.|.+|-|.....|||||+|+++.+|+.|+..|+|+.|.|..|+|+++.-..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 57899999999999999999999999999999998899999999999999999999999999999999999987543
No 61
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.19 E-value=2e-10 Score=127.51 Aligned_cols=160 Identities=23% Similarity=0.313 Sum_probs=135.6
Q ss_pred CcEEEEecCCC-CCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCC--
Q 002123 277 SRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD-- 353 (964)
Q Consensus 277 srtLFVgNLP~-~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~-- 353 (964)
+..|.|.||.. .+|.+.|..+|.-||+|..|++-.+.+--|.|+|.|...|+-|++.|+|..+.|++|+|.++....
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 58899999976 489999999999999999999866666899999999999999999999999999999998875321
Q ss_pred ----CCC----------------C----c-----cCCcceEEEeccCCCCcHHHHHHHhhccCce-EEEEecCCCCceEE
Q 002123 354 ----NPS----------------E----K-----DANQGTLVVFNLDSSVSTEELHQIFGIYGEI-REIRDTQHKHNHKF 403 (964)
Q Consensus 354 ----~~~----------------~----~-----~~~~~tLfV~NLp~~vTeedLrelFs~fG~I-~sIri~~~skGfaF 403 (964)
... + + -.+..+|.+.|+|.++++|+|+++|..-|.. +-.+...+.+.+++
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal 456 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMAL 456 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceee
Confidence 000 0 0 0234589999999999999999999998765 55566666788999
Q ss_pred EeeCCHHHHHHHHHHhCCceeCC-ceEEEEeccC
Q 002123 404 IEFYDIRAAETALRTLNRSDVAG-KQIKLEASRP 436 (964)
Q Consensus 404 VeF~d~esA~kAL~~LNG~~I~G-r~LkV~~A~~ 436 (964)
+.+.++|+|..|+-.|+...+++ ..|+|.+++.
T Consensus 457 ~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 457 PQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999999875 5999999875
No 62
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=5.8e-11 Score=128.90 Aligned_cols=99 Identities=15% Similarity=0.254 Sum_probs=82.4
Q ss_pred cCCccccccceeeecCCCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC---CCCceEEEeeCCHHH
Q 002123 335 QNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ---HKHNHKFIEFYDIRA 411 (964)
Q Consensus 335 ng~~i~Gr~L~V~~A~~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~---~skGfaFVeF~d~es 411 (964)
++-...|..+.++.+... +.....+.|+|.|||+..-|-||+.+|.+||.|.+|.|+- .+||||||+|++.++
T Consensus 73 ~~~~t~g~~~~~~~st~s----~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~d 148 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPSTNS----SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPAD 148 (376)
T ss_pred CCCCCCCCccccCCCCcC----CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhh
Confidence 444556666655444322 2233456899999999999999999999999999998863 489999999999999
Q ss_pred HHHHHHHhCCceeCCceEEEEeccCC
Q 002123 412 AETALRTLNRSDVAGKQIKLEASRPG 437 (964)
Q Consensus 412 A~kAL~~LNG~~I~Gr~LkV~~A~~k 437 (964)
|++|-++|||..|.||+|.|..|..+
T Consensus 149 adRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 149 ADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHHHHHhhcceeeceEEEEeccchh
Confidence 99999999999999999999999875
No 63
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=3.5e-11 Score=121.08 Aligned_cols=79 Identities=23% Similarity=0.488 Sum_probs=74.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCC
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~ 354 (964)
-.++|||+||+.++++.||..+|..||+|.+|.+.....|||||+|+++.+|+.|+..|+|+.|.|..|.|+.+.....
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 3689999999999999999999999999999999899999999999999999999999999999999999999875543
No 64
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=4e-11 Score=115.19 Aligned_cols=78 Identities=26% Similarity=0.467 Sum_probs=72.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
....+++|||+||+..++|++|.++|+++|+|+.|.+ +....|||||+|.+.++|+.|++.++|..++.++|.|+
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 3456899999999999999999999999999999975 56788999999999999999999999999999999998
Q ss_pred ecC
Q 002123 348 YSI 350 (964)
Q Consensus 348 ~A~ 350 (964)
|..
T Consensus 112 ~D~ 114 (153)
T KOG0121|consen 112 WDA 114 (153)
T ss_pred ccc
Confidence 864
No 65
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.15 E-value=1e-10 Score=125.94 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=69.1
Q ss_pred CcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe--cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 277 srtLFVgNLP~~vTEedLrelFs~fG~I~svki--tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
.++|||+|||+.+||++|+++|+.||+|.+|++ .+..+|||||+|.+.++|+.||. |+|..|.|+.|.|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 579999999999999999999999999999987 34468999999999999999995 9999999999999998644
No 66
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.14 E-value=1.4e-10 Score=124.89 Aligned_cols=74 Identities=19% Similarity=0.368 Sum_probs=69.4
Q ss_pred cceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC--CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 002123 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH--KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~--skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
.++|||+||++.+++++|+++|+.||+|++|+|..+ .++||||+|.++++|+.||. |||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 468999999999999999999999999999999765 57999999999999999996 999999999999999874
No 67
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=6.4e-11 Score=124.08 Aligned_cols=77 Identities=25% Similarity=0.423 Sum_probs=67.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
.+...++|||++|+|++..++|+++|++||+|++..+ ++++||||||+|.|.++|.+|++ --+-.|+||+-.|+
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccc
Confidence 3445689999999999999999999999999998864 89999999999999999999997 34457899998887
Q ss_pred ecC
Q 002123 348 YSI 350 (964)
Q Consensus 348 ~A~ 350 (964)
.|.
T Consensus 87 lA~ 89 (247)
T KOG0149|consen 87 LAS 89 (247)
T ss_pred hhh
Confidence 764
No 68
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.13 E-value=1.4e-10 Score=100.24 Aligned_cols=66 Identities=23% Similarity=0.560 Sum_probs=58.9
Q ss_pred EEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccce
Q 002123 280 LFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (964)
Q Consensus 280 LFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~ 345 (964)
|||+|||+++++++|+++|+.||.|..+++ .++.+|+|||+|.+.++|++|++.+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999986 245789999999999999999999998999999874
No 69
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=1.8e-10 Score=107.19 Aligned_cols=81 Identities=30% Similarity=0.488 Sum_probs=75.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe--cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki--tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
.....+-|||+|||.++|.++..++|.+||.|+.|++ +...+|.|||.|++..+|++|++.|.|..+.++.|.|.|.+
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 4556799999999999999999999999999999998 67789999999999999999999999999999999999987
Q ss_pred CCC
Q 002123 351 PKD 353 (964)
Q Consensus 351 ~k~ 353 (964)
+.+
T Consensus 94 ~~~ 96 (124)
T KOG0114|consen 94 PED 96 (124)
T ss_pred HHH
Confidence 653
No 70
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.09 E-value=3.2e-10 Score=98.04 Aligned_cols=66 Identities=26% Similarity=0.538 Sum_probs=59.9
Q ss_pred EEEeccCCCCcHHHHHHHhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEE
Q 002123 365 LVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (964)
Q Consensus 365 LfV~NLp~~vTeedLrelFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~Lk 430 (964)
|||+|||.++++++|+++|+.||.|..+++..+ .+++|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999998765 368999999999999999999999999999885
No 71
>smart00362 RRM_2 RNA recognition motif.
Probab=99.09 E-value=4.6e-10 Score=94.28 Aligned_cols=69 Identities=30% Similarity=0.571 Sum_probs=64.1
Q ss_pred eEEEeccCCCCcHHHHHHHhhccCceEEEEecCCC---CceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHK---HNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 364 tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~s---kGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
+|+|+|||..+++++|+++|.+||.|..+++..+. +++|||+|.+.++|++|++.+++..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999887653 6999999999999999999999999999999873
No 72
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.08 E-value=1e-09 Score=120.67 Aligned_cols=169 Identities=20% Similarity=0.327 Sum_probs=135.8
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHc--cCCccccccceeee
Q 002123 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKAL--QNKPLRRRKLDIHY 348 (964)
Q Consensus 271 ~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~L--ng~~i~Gr~L~V~~ 348 (964)
+....++-.|.|++|-..++|.+|.+..+.||.|..+.. ...+..|.|+|+|.+.|++++... +...+.|+.--+.|
T Consensus 25 phk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~-~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 25 PHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTC-MPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEe-ccccceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 445667889999999999999999999999999998876 566678999999999999998732 23457788888888
Q ss_pred cCCCCC-CC--CccCCcceEE--EeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCce
Q 002123 349 SIPKDN-PS--EKDANQGTLV--VFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSD 423 (964)
Q Consensus 349 A~~k~~-~~--~~~~~~~tLf--V~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~ 423 (964)
+..+.- +. +.......|. |-|--..+|-+-|..++.+.|.|.+|.|+++..-.|.|+|++.+.|++|..+|||..
T Consensus 104 Stsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGAD 183 (494)
T KOG1456|consen 104 STSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGAD 183 (494)
T ss_pred chhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhccccc
Confidence 754322 11 1112223333 446567899999999999999999999998855579999999999999999999998
Q ss_pred e--CCceEEEEeccCCchh
Q 002123 424 V--AGKQIKLEASRPGGAR 440 (964)
Q Consensus 424 I--~Gr~LkV~~A~~k~~r 440 (964)
| +.++|+|++|+|..-+
T Consensus 184 IYsGCCTLKIeyAkP~rln 202 (494)
T KOG1456|consen 184 IYSGCCTLKIEYAKPTRLN 202 (494)
T ss_pred ccccceeEEEEecCcceee
Confidence 7 5689999999996543
No 73
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=3.6e-10 Score=118.90 Aligned_cols=80 Identities=23% Similarity=0.438 Sum_probs=75.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
.....++|-|.||+.+++|++|+++|.+||.|..|++ +|.+||||||+|.+.++|.+||+.|||.-+..--|+|.
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 3446789999999999999999999999999999976 89999999999999999999999999999999999999
Q ss_pred ecCCC
Q 002123 348 YSIPK 352 (964)
Q Consensus 348 ~A~~k 352 (964)
|+.|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99875
No 74
>smart00362 RRM_2 RNA recognition motif.
Probab=99.04 E-value=5.7e-10 Score=93.71 Aligned_cols=69 Identities=33% Similarity=0.605 Sum_probs=63.0
Q ss_pred EEEEecCCCCCCHHHHHHhhccCCcEEEEEec---CCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 279 TLFVRNINSNVEDSELKALFEQFGDIRTIYTA---CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 279 tLFVgNLP~~vTEedLrelFs~fG~I~svkit---gksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
+|||+|||..+++++|+++|++||+|..+++. ++.+|+|||+|.+.++|++|++.+++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999998762 4468999999999999999999999999999988763
No 75
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=9.6e-10 Score=102.39 Aligned_cols=81 Identities=27% Similarity=0.408 Sum_probs=74.1
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEec--CCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCc
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT--QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~--~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~ 438 (964)
-.+.|||+|||..+|.|+..++|.+||.|..|+|- +..+|-|||-|++..+|.+|++.|+|..+.++.|.|-+.++..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 45689999999999999999999999999999984 4578999999999999999999999999999999999998866
Q ss_pred hhh
Q 002123 439 ARR 441 (964)
Q Consensus 439 ~r~ 441 (964)
..+
T Consensus 97 ~~~ 99 (124)
T KOG0114|consen 97 AFK 99 (124)
T ss_pred HHH
Confidence 544
No 76
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.04 E-value=8.4e-10 Score=92.06 Aligned_cols=56 Identities=27% Similarity=0.569 Sum_probs=52.3
Q ss_pred HHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 379 LHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 379 LrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
|+++|++||+|.+|++..+.+++|||+|.+.++|.+|++.|||..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998876799999999999999999999999999999999986
No 77
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=4.2e-10 Score=118.41 Aligned_cols=77 Identities=22% Similarity=0.383 Sum_probs=72.2
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEecc
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (964)
...+|-|.||+.++++++|+++|.+||.|.+|.+.. .+||||||.|.+.++|++||+.|||.-++.-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 456899999999999999999999999999998854 479999999999999999999999999999999999999
Q ss_pred CC
Q 002123 436 PG 437 (964)
Q Consensus 436 ~k 437 (964)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 85
No 78
>PLN03213 repressor of silencing 3; Provisional
Probab=99.02 E-value=6.6e-10 Score=125.28 Aligned_cols=86 Identities=20% Similarity=0.271 Sum_probs=76.0
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-CCceEEEeeCCH--HHHHHHHHHhCCceeCCceEEEEeccC
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-KHNHKFIEFYDI--RAAETALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-skGfaFVeF~d~--esA~kAL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
....+|||+||++.+++++|+..|..||.|.+|.|++. .||||||+|.+. .++.+||..|||..+.|+.|+|..|++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 34568999999999999999999999999999998753 589999999987 789999999999999999999999998
Q ss_pred Cchhhhcch
Q 002123 437 GGARRFMVQ 445 (964)
Q Consensus 437 k~~r~~~qq 445 (964)
.-.-++.+.
T Consensus 88 ~YLeRLkrE 96 (759)
T PLN03213 88 HYLARLKRE 96 (759)
T ss_pred HHHHHHHHH
Confidence 765554433
No 79
>PLN03213 repressor of silencing 3; Provisional
Probab=99.02 E-value=5.4e-10 Score=125.99 Aligned_cols=120 Identities=13% Similarity=0.187 Sum_probs=86.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-cCCccceEEEEeCCH--HHHHHHHHHccCCccccccceeeecC
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-ACKHRGFVMISYYDI--RAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-tgksRGfaFV~F~d~--esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
.....+||||||++++|+++|+.+|.+||.|..|.+ .-+.||||||+|.+. .++++||..|||..+.|+.|+|..|.
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 345689999999999999999999999999999986 222399999999987 78999999999999999999999886
Q ss_pred CCC------CCCCc-cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEec
Q 002123 351 PKD------NPSEK-DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT 395 (964)
Q Consensus 351 ~k~------~~~~~-~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~ 395 (964)
+.- ++.+. .....++-+-- .......|+-+|-+.++|+.+-+-
T Consensus 87 P~YLeRLkrEReea~s~~~~~~kl~k--~~~e~~qLnifFPrLrKvKslPfs 136 (759)
T PLN03213 87 EHYLARLKREWEAASSTSDNTIKAPS--DSPPATHLNIFFPRLRKVKAMPLS 136 (759)
T ss_pred HHHHHHHHHHHHHhhccccccccccc--cCCccceeeEeccccccccccccC
Confidence 631 00000 00011111111 113345677777777777766443
No 80
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=7.1e-10 Score=119.40 Aligned_cols=79 Identities=27% Similarity=0.451 Sum_probs=74.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
...+.+||||.-|+.+++|++|+..|+.||+|+.|++ +++++|||||+|+++.+...|.+..+|..|+|+.|.|+
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 4478899999999999999999999999999999964 89999999999999999999999999999999999998
Q ss_pred ecCC
Q 002123 348 YSIP 351 (964)
Q Consensus 348 ~A~~ 351 (964)
+-..
T Consensus 177 vERg 180 (335)
T KOG0113|consen 177 VERG 180 (335)
T ss_pred eccc
Confidence 8653
No 81
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.99 E-value=4.2e-10 Score=115.74 Aligned_cols=78 Identities=24% Similarity=0.494 Sum_probs=72.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
.-...++|-|-||..-++.++|+.+|++||.|-+|+| ++.++|||||.|.+..+|+.|+++|+|.+++|+.|.|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 3445689999999999999999999999999999987 78999999999999999999999999999999999998
Q ss_pred ecC
Q 002123 348 YSI 350 (964)
Q Consensus 348 ~A~ 350 (964)
+|.
T Consensus 89 ~ar 91 (256)
T KOG4207|consen 89 MAR 91 (256)
T ss_pred hhh
Confidence 874
No 82
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=8.8e-10 Score=106.11 Aligned_cols=76 Identities=25% Similarity=0.385 Sum_probs=69.0
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEec-----CCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEecc
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~-----~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (964)
..+||||+||...++||+|.++|+++|+|..|.+- ....||+||+|.+.++|+.|++-++|..++.++|.+.|--
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 56899999999999999999999999999998652 2367899999999999999999999999999999999864
Q ss_pred C
Q 002123 436 P 436 (964)
Q Consensus 436 ~ 436 (964)
-
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 3
No 83
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.97 E-value=1.6e-09 Score=115.33 Aligned_cols=74 Identities=15% Similarity=0.180 Sum_probs=68.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe--cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~svki--tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
...+|||+||++.+||++|+++|+.||+|.+|++ .++.+|||||+|.++++|+.|+. |+|..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 3579999999999999999999999999999987 56678999999999999999995 99999999999997754
No 84
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.96 E-value=2.1e-09 Score=114.41 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=68.7
Q ss_pred cceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC--CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 002123 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH--KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~--skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
..+|||+||++.+|+++|+++|+.||+|.+|++..+ .++||||+|+++++|+.|+. |+|..|.+++|.|..+..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 469999999999999999999999999999999865 46799999999999999996 999999999999998764
No 85
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.95 E-value=3.9e-09 Score=89.05 Aligned_cols=70 Identities=34% Similarity=0.609 Sum_probs=65.2
Q ss_pred eEEEeccCCCCcHHHHHHHhhccCceEEEEecCCC----CceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHK----HNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 364 tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~s----kGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
+|+|+|||..+++++|+++|+.||.|..+.+.... +++|||+|.+.++|..|++.+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999887653 78999999999999999999999999999999864
No 86
>smart00360 RRM RNA recognition motif.
Probab=98.95 E-value=1.6e-09 Score=90.51 Aligned_cols=66 Identities=32% Similarity=0.598 Sum_probs=60.3
Q ss_pred EecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 282 VRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 282 VgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
|+|||..+++++|+++|++||.|..+.+ +++++|+|||+|.+.++|.+|++.+++..+.|++|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999999876 35678999999999999999999999999999988763
No 87
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.95 E-value=8.4e-10 Score=113.61 Aligned_cols=76 Identities=26% Similarity=0.506 Sum_probs=70.7
Q ss_pred cceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 002123 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
-..|.|-||..-++.++|+.+|++||.|-+|.|.. .++|||||.|.+..+|++|+++|+|..++|+.|.|++|+-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 35899999999999999999999999999998864 4899999999999999999999999999999999999874
Q ss_pred C
Q 002123 437 G 437 (964)
Q Consensus 437 k 437 (964)
.
T Consensus 93 g 93 (256)
T KOG4207|consen 93 G 93 (256)
T ss_pred C
Confidence 3
No 88
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=6.3e-10 Score=115.18 Aligned_cols=81 Identities=28% Similarity=0.514 Sum_probs=75.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
....++|||++|..++||.-|...|-+||+|.+|.+ +.++||||||+|...|+|..||..||+.++.||.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 345699999999999999999999999999999976 789999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002123 349 SIPKDN 354 (964)
Q Consensus 349 A~~k~~ 354 (964)
|.|..-
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 988654
No 89
>smart00360 RRM RNA recognition motif.
Probab=98.91 E-value=3.6e-09 Score=88.35 Aligned_cols=66 Identities=33% Similarity=0.581 Sum_probs=60.3
Q ss_pred EeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 367 VFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 367 V~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
|+|||..+++++|+++|++||.|..+++..+ .+++|||+|.+.++|.+|++.|++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999999988654 36899999999999999999999999999999873
No 90
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.90 E-value=8.2e-09 Score=107.43 Aligned_cols=75 Identities=28% Similarity=0.568 Sum_probs=69.7
Q ss_pred cceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 002123 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
..+|||+||+..+++++|+++|.+||.|..|++.. ..+|||||+|.+.++|..|+..++|..+.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999998887743 4789999999999999999999999999999999999653
No 91
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=1.3e-09 Score=125.61 Aligned_cols=161 Identities=24% Similarity=0.340 Sum_probs=127.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
...+.++|+|-|||..|++++|+.+|+.||+|+.|+.+...+|.+||+|.|..+|+.|+++|++..|.|+.|........
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 35677999999999999999999999999999999999999999999999999999999999999999998884322111
Q ss_pred CCC------------------CCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHH
Q 002123 353 DNP------------------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAET 414 (964)
Q Consensus 353 ~~~------------------~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~k 414 (964)
... ....-....++.- |++..+..-++.+|..+|.+.. +.++..+..-|++|.+..++..
T Consensus 151 ~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~ 228 (549)
T KOG4660|consen 151 AMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAF 228 (549)
T ss_pred cchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhh
Confidence 100 0011123345544 9999999888889999999988 7777666678999999999977
Q ss_pred HHHHhCCceeCCceEEEEeccC
Q 002123 415 ALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 415 AL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
++..+ |..+.+.....+++.+
T Consensus 229 ~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 229 SEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred cccCC-ceecCCCCceEEecCC
Confidence 77644 6667776666666555
No 92
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=1.8e-09 Score=113.46 Aligned_cols=79 Identities=24% Similarity=0.329 Sum_probs=69.3
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
|..-++|||++|++.+..|.|++.|++||+|.++.|+. ++||||||+|.|.++|.+|++. -.-.|+||+..|.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 44567999999999999999999999999999987754 4899999999999999999984 34578999999999
Q ss_pred ccCCc
Q 002123 434 SRPGG 438 (964)
Q Consensus 434 A~~k~ 438 (964)
|.-..
T Consensus 88 A~lg~ 92 (247)
T KOG0149|consen 88 ASLGG 92 (247)
T ss_pred hhhcC
Confidence 87644
No 93
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.89 E-value=5.1e-09 Score=88.36 Aligned_cols=70 Identities=33% Similarity=0.656 Sum_probs=63.8
Q ss_pred EEEEecCCCCCCHHHHHHhhccCCcEEEEEecC----CccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 279 TLFVRNINSNVEDSELKALFEQFGDIRTIYTAC----KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 279 tLFVgNLP~~vTEedLrelFs~fG~I~svkitg----ksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
+|+|+|||..+++++|+++|+.||.|..+.+.. +.+|+|||+|.+.++|+.|++.+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999988732 3589999999999999999999999999999998864
No 94
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=3.8e-10 Score=114.14 Aligned_cols=77 Identities=19% Similarity=0.390 Sum_probs=71.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
-..+.-|||+|||.+.||.||.-+|++||+|+.|.+ ||+++||||+.|+|..+..-|+..|||..|.||.|+|+.
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 346788999999999999999999999999999965 899999999999999999999999999999999999976
Q ss_pred cC
Q 002123 349 SI 350 (964)
Q Consensus 349 A~ 350 (964)
..
T Consensus 112 v~ 113 (219)
T KOG0126|consen 112 VS 113 (219)
T ss_pred cc
Confidence 53
No 95
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.85 E-value=5.6e-09 Score=87.12 Aligned_cols=56 Identities=29% Similarity=0.632 Sum_probs=51.0
Q ss_pred HHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 294 LKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 294 LrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
|+++|++||+|..+.+..+.+++|||+|.+.++|++|++.|||..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999985555799999999999999999999999999999999986
No 96
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.7e-09 Score=112.08 Aligned_cols=81 Identities=26% Similarity=0.478 Sum_probs=74.6
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
...++|||++|...+++.-|...|-+||.|+.|.++- +.||||||+|.-.|+|.+||..||+.++.||.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 3468999999999999999999999999999999864 47999999999999999999999999999999999999
Q ss_pred cCCchh
Q 002123 435 RPGGAR 440 (964)
Q Consensus 435 ~~k~~r 440 (964)
+|...+
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 986543
No 97
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.85 E-value=3.3e-09 Score=122.39 Aligned_cols=78 Identities=24% Similarity=0.446 Sum_probs=73.9
Q ss_pred cEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 278 rtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
+.|||||||++++|++|.++|+..|.|.++++ +|+.|||||++|.+.++|.+|++.|||.++.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999986 8999999999999999999999999999999999999999765
Q ss_pred CCC
Q 002123 353 DNP 355 (964)
Q Consensus 353 ~~~ 355 (964)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 543
No 98
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=4.1e-09 Score=106.97 Aligned_cols=77 Identities=32% Similarity=0.465 Sum_probs=70.3
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC--CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCC
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ--HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~--~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k 437 (964)
..++|||+|||.++-+.+|.++|.+||.|..|.+-. ....||||+|+++.+|+.||..-+|..++|+.|+|+++...
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 467999999999999999999999999999987643 34679999999999999999999999999999999999864
No 99
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=6e-08 Score=111.31 Aligned_cols=142 Identities=19% Similarity=0.320 Sum_probs=109.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-------cCCccc---eEEEEeCCHHHHHHHHHHccCCccccc
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-------ACKHRG---FVMISYYDIRAARNAMKALQNKPLRRR 342 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-------tgksRG---faFV~F~d~esA~kAl~~Lng~~i~Gr 342 (964)
...-+++|||++||++++|++|...|.+||.+..=.- -...+| |+|+.|+++.+++.-+.+..- ...
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~ 331 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEG 331 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---ccc
Confidence 4556899999999999999999999999998764321 122556 999999999998887775432 333
Q ss_pred cceeeecCCCCC-------------------CCCccCCcceEEEeccCCCCcHHHHHHHhh-ccCceEEEEecCC-----
Q 002123 343 KLDIHYSIPKDN-------------------PSEKDANQGTLVVFNLDSSVSTEELHQIFG-IYGEIREIRDTQH----- 397 (964)
Q Consensus 343 ~L~V~~A~~k~~-------------------~~~~~~~~~tLfV~NLp~~vTeedLrelFs-~fG~I~sIri~~~----- 397 (964)
++.++.+.+... ....-...+||||+.||--++.++|..+|. -||.|..+-|..+
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 333333322211 112223568999999999999999999999 6999999988766
Q ss_pred CCceEEEeeCCHHHHHHHHH
Q 002123 398 KHNHKFIEFYDIRAAETALR 417 (964)
Q Consensus 398 skGfaFVeF~d~esA~kAL~ 417 (964)
.+|-|=|+|.+..+-.+||.
T Consensus 412 PkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CCCcceeeecccHHHHHHHh
Confidence 57889999999999999998
No 100
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.82 E-value=1.1e-07 Score=105.14 Aligned_cols=167 Identities=20% Similarity=0.334 Sum_probs=137.7
Q ss_pred CCCCCCCcEEEEecCC--CCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCcccc--cccee
Q 002123 271 PYGEHPSRTLFVRNIN--SNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDI 346 (964)
Q Consensus 271 ~~~e~~srtLFVgNLP--~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~G--r~L~V 346 (964)
.....++..|.+.=|. ..+|-+-|..+....|+|..|.+-.|.-=.|+|+|++.+.|++|.++|||..|.. ..|+|
T Consensus 114 ~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 114 DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 3455566777776555 4689999999999999999998866766689999999999999999999998763 88999
Q ss_pred eecCCCCCC----------------------CC----------------------------------------------c
Q 002123 347 HYSIPKDNP----------------------SE----------------------------------------------K 358 (964)
Q Consensus 347 ~~A~~k~~~----------------------~~----------------------------------------------~ 358 (964)
+||.|..-. .. .
T Consensus 194 eyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~ 273 (494)
T KOG1456|consen 194 EYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYR 273 (494)
T ss_pred EecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccc
Confidence 998764200 00 0
Q ss_pred ----------cCCcceEEEeccCCC-CcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCc
Q 002123 359 ----------DANQGTLVVFNLDSS-VSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGK 427 (964)
Q Consensus 359 ----------~~~~~tLfV~NLp~~-vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr 427 (964)
......+.|.+|+.. ++-+.|..+|..||.|++|++++.+.|-|.|+.-|..+.++|+..||+..+-|.
T Consensus 274 ~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~ 353 (494)
T KOG1456|consen 274 DGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGG 353 (494)
T ss_pred cCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccc
Confidence 001246889999754 567899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccCC
Q 002123 428 QIKLEASRPG 437 (964)
Q Consensus 428 ~LkV~~A~~k 437 (964)
+|.|..++..
T Consensus 354 kl~v~~SkQ~ 363 (494)
T KOG1456|consen 354 KLNVCVSKQN 363 (494)
T ss_pred eEEEeecccc
Confidence 9999987753
No 101
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=1.5e-08 Score=109.40 Aligned_cols=89 Identities=25% Similarity=0.402 Sum_probs=77.2
Q ss_pred CCCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHhCCcee
Q 002123 350 IPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDV 424 (964)
Q Consensus 350 ~~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~LNG~~I 424 (964)
.|..++.....+-+||||.-|+.+++|.+|+..|+.||.|+.|+++. +++|||||+|+++.+...|.+..+|..|
T Consensus 89 dP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I 168 (335)
T KOG0113|consen 89 DPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI 168 (335)
T ss_pred CCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee
Confidence 34444444455678999999999999999999999999999998764 5899999999999999999999999999
Q ss_pred CCceEEEEeccCCc
Q 002123 425 AGKQIKLEASRPGG 438 (964)
Q Consensus 425 ~Gr~LkV~~A~~k~ 438 (964)
+|+.|.|.+-....
T Consensus 169 dgrri~VDvERgRT 182 (335)
T KOG0113|consen 169 DGRRILVDVERGRT 182 (335)
T ss_pred cCcEEEEEeccccc
Confidence 99999999866544
No 102
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=1.1e-08 Score=99.44 Aligned_cols=81 Identities=17% Similarity=0.435 Sum_probs=74.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
...-..-.|||.++-..+||++|.+.|..||+|+.+.+ +|-.||||+|+|++.+.|++|+.++||..|.|.+|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 34445678999999999999999999999999999975 7889999999999999999999999999999999999
Q ss_pred eecCCC
Q 002123 347 HYSIPK 352 (964)
Q Consensus 347 ~~A~~k 352 (964)
.|+.-+
T Consensus 147 Dw~Fv~ 152 (170)
T KOG0130|consen 147 DWCFVK 152 (170)
T ss_pred EEEEec
Confidence 998654
No 103
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.73 E-value=1.7e-08 Score=98.03 Aligned_cols=82 Identities=20% Similarity=0.403 Sum_probs=73.3
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
+......|||.++....++++|.+.|..||+|+.|.+.-+ .||||+|+|++.++|++|+.+|||..+-|..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 3445679999999999999999999999999999987533 58999999999999999999999999999999999
Q ss_pred eccCCch
Q 002123 433 ASRPGGA 439 (964)
Q Consensus 433 ~A~~k~~ 439 (964)
|+-.+..
T Consensus 148 w~Fv~gp 154 (170)
T KOG0130|consen 148 WCFVKGP 154 (170)
T ss_pred EEEecCC
Confidence 9975543
No 104
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.67 E-value=3.1e-09 Score=107.71 Aligned_cols=76 Identities=20% Similarity=0.368 Sum_probs=70.3
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEecc
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (964)
...-|||+|||..+|+.||.-+|++||+|..|.+++ +++||||++|+|..+..-|+..|||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 456899999999999999999999999999998865 489999999999999999999999999999999999765
Q ss_pred C
Q 002123 436 P 436 (964)
Q Consensus 436 ~ 436 (964)
.
T Consensus 114 ~ 114 (219)
T KOG0126|consen 114 N 114 (219)
T ss_pred c
Confidence 3
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=98.65 E-value=6.1e-08 Score=84.94 Aligned_cols=57 Identities=28% Similarity=0.477 Sum_probs=49.9
Q ss_pred HHHHHHHhh----ccCceEEEE-e-c------CCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 376 TEELHQIFG----IYGEIREIR-D-T------QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 376 eedLrelFs----~fG~I~sIr-i-~------~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
+++|+++|+ +||.|.+|. + + +.++|||||+|.+.++|.+|++.|||+.++|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999884 3 2 3468999999999999999999999999999999873
No 106
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.65 E-value=6.3e-08 Score=111.95 Aligned_cols=79 Identities=25% Similarity=0.355 Sum_probs=73.3
Q ss_pred ceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCC
Q 002123 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (964)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k 437 (964)
..+||+|+|+++++++|..+|+..|.|.+++++- +.+||||++|.+.++|..|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 7899999999999999999999999999999864 47999999999999999999999999999999999999876
Q ss_pred chhh
Q 002123 438 GARR 441 (964)
Q Consensus 438 ~~r~ 441 (964)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 5544
No 107
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.64 E-value=4.2e-08 Score=116.31 Aligned_cols=76 Identities=33% Similarity=0.558 Sum_probs=72.7
Q ss_pred CcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCC
Q 002123 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 353 (964)
Q Consensus 277 srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~ 353 (964)
++|||||.|+.+++|.||+.+|+.||+|.+|.+ ...||+|||+.....+|.+|+.+|.+..+.++.|+|.|+..+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEee-ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 589999999999999999999999999999998 7899999999999999999999999999999999999997654
No 108
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=2.4e-08 Score=119.98 Aligned_cols=159 Identities=19% Similarity=0.337 Sum_probs=138.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEec----CCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA----CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkit----gksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
....+++||++||+..+++.+|+..|..+|.|.+|.+. +...-||||.|.+...+-.|..++.+..|..-.+++.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 44567999999999999999999999999999999872 33445999999999999999999999988877888777
Q ss_pred cCCCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCC--
Q 002123 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAG-- 426 (964)
Q Consensus 349 A~~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~G-- 426 (964)
..++. ...+.++|+.|...+....|..+|..||.|..|.+. +..-|+||.|++...|+.|+..|-|..|+|
T Consensus 448 G~~ks------t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~-hgq~yayi~yes~~~aq~a~~~~rgap~G~P~ 520 (975)
T KOG0112|consen 448 GQPKS------TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR-HGQPYAYIQYESPPAAQAATHDMRGAPLGGPP 520 (975)
T ss_pred ccccc------ccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-cCCcceeeecccCccchhhHHHHhcCcCCCCC
Confidence 76532 345689999999999999999999999999998764 346699999999999999999999999975
Q ss_pred ceEEEEeccCCc
Q 002123 427 KQIKLEASRPGG 438 (964)
Q Consensus 427 r~LkV~~A~~k~ 438 (964)
+.|.|.+|.+..
T Consensus 521 ~r~rvdla~~~~ 532 (975)
T KOG0112|consen 521 RRLRVDLASPPG 532 (975)
T ss_pred cccccccccCCC
Confidence 789999998755
No 109
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=5.2e-08 Score=103.60 Aligned_cols=82 Identities=22% Similarity=0.398 Sum_probs=76.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
+..+.|+|||-.||.+..+.||..+|-.||.|.+.++ +..+|+||||.|.++.+|+.||.+|||..|.=++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 3456799999999999999999999999999999875 89999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 002123 348 YSIPKDN 354 (964)
Q Consensus 348 ~A~~k~~ 354 (964)
...||+.
T Consensus 361 LKRPkda 367 (371)
T KOG0146|consen 361 LKRPKDA 367 (371)
T ss_pred hcCcccc
Confidence 9888764
No 110
>smart00361 RRM_1 RNA recognition motif.
Probab=98.58 E-value=9.4e-08 Score=83.76 Aligned_cols=57 Identities=23% Similarity=0.402 Sum_probs=51.0
Q ss_pred CHHHHHHhhc----cCCcEEEEE-e-----c--CCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 290 EDSELKALFE----QFGDIRTIY-T-----A--CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 290 TEedLrelFs----~fG~I~svk-i-----t--gksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
.+++|+++|+ +||.|.+|. + + +.++|||||+|.+.++|.+|++.|||..+.|+.|.+
T Consensus 1 ~~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 1 KDEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred CchhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 3678999998 999999884 2 3 778999999999999999999999999999999876
No 111
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.57 E-value=1.1e-07 Score=110.66 Aligned_cols=166 Identities=17% Similarity=0.337 Sum_probs=136.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccC-----------C-cEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccc
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQF-----------G-DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR 340 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~f-----------G-~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~ 340 (964)
.....+.++|+++|+.++++....+|..- | .|..+.+ ...+.|||++|.+.++|..|+. +++..+.
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~-n~~~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL-NLEKNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee-cccccceeEEecCCCchhhhhc-ccchhhC
Confidence 44567899999999999999999999743 3 3777777 7889999999999999999995 8999999
Q ss_pred cccceeeecCCCCC-------------------CCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-----
Q 002123 341 RRKLDIHYSIPKDN-------------------PSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ----- 396 (964)
Q Consensus 341 Gr~L~V~~A~~k~~-------------------~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~----- 396 (964)
|+++.+........ ..........+||++||..+++++++++...||.++..+++.
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 98887743321110 011122456899999999999999999999999998866643
Q ss_pred CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCchh
Q 002123 397 HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGAR 440 (964)
Q Consensus 397 ~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~r 440 (964)
.++||||.+|.+.-....|+..|||..+++++|.|+.|......
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~ 372 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASN 372 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchh
Confidence 47999999999999999999999999999999999999876543
No 112
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.54 E-value=6.6e-08 Score=102.07 Aligned_cols=161 Identities=19% Similarity=0.335 Sum_probs=112.5
Q ss_pred CccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 002123 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 227 (964)
Q Consensus 149 ~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpdEdDL~sG~SkGfGFV~f~~t~edaeei~ 227 (964)
..+|+++|.+ ...++|... | .-.|.|.-.+ ..-|||||+ |++.-||+ +
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~--------------f--------~~yg~~~d~~------mk~gf~fv~-fed~rda~--D 50 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERF--------------F--------KGYGKIPDAD------MKNGFGFVE-FEDPRDAD--D 50 (216)
T ss_pred CceeecccCCccchhHHHHH--------------H--------hhccccccce------eecccceec-cCchhhhh--c
Confidence 4688999987 444455444 6 5555433311 145699998 55777778 8
Q ss_pred HHhccCCeeecCCcchhhhcccccccCCCC-CCCCCCCC----cCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCC
Q 002123 228 LFSSGGGMELEGDDRLFAVQKNSDFVGGVS-NQGVSAGS----VVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFG 302 (964)
Q Consensus 228 ai~s~nG~eLegd~~v~vg~~ls~l~~~~~-n~~~~~~~----~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG 302 (964)
|+...+|.+|.+.+ +.+.. ..... ..+..-+. ............+.++|.+++..+.+.+|.+.|.++|
T Consensus 51 av~~l~~~~l~~e~-~vve~-----~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g 124 (216)
T KOG0106|consen 51 AVHDLDGKELCGER-LVVEH-----ARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAG 124 (216)
T ss_pred ccchhcCceeccee-eeeec-----ccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccC
Confidence 99999999998554 22222 11100 01111000 0111122456678999999999999999999999999
Q ss_pred cEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 303 DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 303 ~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
.+..... .++++||+|...++|.+|+..|++..+.++.|.+...
T Consensus 125 ~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 125 EVTYVDA---RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred CCchhhh---hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 9955444 8899999999999999999999999999999999544
No 113
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.52 E-value=1.8e-07 Score=98.22 Aligned_cols=77 Identities=27% Similarity=0.513 Sum_probs=71.5
Q ss_pred ceEEEeccCCCCcHHHHHH----HhhccCceEEEEec--CCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 002123 363 GTLVVFNLDSSVSTEELHQ----IFGIYGEIREIRDT--QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 363 ~tLfV~NLp~~vTeedLre----lFs~fG~I~sIri~--~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
.||||.||.+.+..++|+. +|++||.|..|... ++.+|-|||.|++.+.|..|+++|+|..+-|+.++|.||+.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 3999999999999999998 99999999999875 45789999999999999999999999999999999999998
Q ss_pred Cch
Q 002123 437 GGA 439 (964)
Q Consensus 437 k~~ 439 (964)
+..
T Consensus 90 ~sd 92 (221)
T KOG4206|consen 90 DSD 92 (221)
T ss_pred ccc
Confidence 664
No 114
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.52 E-value=1.1e-07 Score=105.18 Aligned_cols=164 Identities=20% Similarity=0.279 Sum_probs=132.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
...+++|++++..++.+.++..++..+|.+..+.. ...++|+++|.|...+.+..|+.....+.+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 45789999999999999999999999998777653 5679999999999999999999855555666666665554
Q ss_pred CCCCCCCC------ccCCcceEE-EeccCCCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHHHHH
Q 002123 350 IPKDNPSE------KDANQGTLV-VFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALR 417 (964)
Q Consensus 350 ~~k~~~~~------~~~~~~tLf-V~NLp~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~kAL~ 417 (964)
........ ......++| |.||+.++++++|+..|..+|.|..+++.. ..++||||+|.....+..|+.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 43321111 111233555 999999999999999999999999999865 368899999999999999999
Q ss_pred HhCCceeCCceEEEEeccCCch
Q 002123 418 TLNRSDVAGKQIKLEASRPGGA 439 (964)
Q Consensus 418 ~LNG~~I~Gr~LkV~~A~~k~~ 439 (964)
. ....+.++++.+....+...
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred c-ccCcccCcccccccCCCCcc
Confidence 7 88899999999999887643
No 115
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.52 E-value=1.5e-07 Score=111.77 Aligned_cols=80 Identities=29% Similarity=0.377 Sum_probs=75.3
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCchh
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGAR 440 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~r 440 (964)
..+||||+.|+..+++.||+.+|+.||+|.+|.++. .+++|||+.....+|.+|+.+|++..+.++.|+|.||..++.+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 467999999999999999999999999999999886 4999999999999999999999999999999999999988865
Q ss_pred h
Q 002123 441 R 441 (964)
Q Consensus 441 ~ 441 (964)
.
T Consensus 499 s 499 (894)
T KOG0132|consen 499 S 499 (894)
T ss_pred h
Confidence 4
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.50 E-value=2.6e-07 Score=101.77 Aligned_cols=79 Identities=29% Similarity=0.396 Sum_probs=70.5
Q ss_pred CccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCC-ceeCCceEEEEecc
Q 002123 357 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR-SDVAGKQIKLEASR 435 (964)
Q Consensus 357 ~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG-~~I~Gr~LkV~~A~ 435 (964)
.++..-.+|||++|-..+++.+|+++|.+||+|++|++... +++|||+|.+.++|+.|.+++-. ..|+|++|+|.|..
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 34556679999999999999999999999999999999875 77999999999999999877654 46899999999999
Q ss_pred C
Q 002123 436 P 436 (964)
Q Consensus 436 ~ 436 (964)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 8
No 117
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.48 E-value=4e-08 Score=102.25 Aligned_cols=130 Identities=22% Similarity=0.298 Sum_probs=105.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
...+||||.|+-..++|+-|.++|-+.|+|..|.| .++.| ||||.|.++-+..-|++.+||..+.++.+.|++-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 45689999999999999999999999999999987 34455 99999999999999999999999999988876543
Q ss_pred CCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHH
Q 002123 351 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRT 418 (964)
Q Consensus 351 ~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~ 418 (964)
..... -|+..++++.+...|+.-|.|..+++... .+.++||.+....+.-.|+..
T Consensus 86 G~sha-------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~ 144 (267)
T KOG4454|consen 86 GNSHA-------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDL 144 (267)
T ss_pred CCCcc-------------hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhh
Confidence 22111 16677899999999999999998887543 566788877666555555553
No 118
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.47 E-value=1e-07 Score=101.22 Aligned_cols=161 Identities=18% Similarity=0.210 Sum_probs=123.2
Q ss_pred cEEEEecCCCCCCHHH-H--HHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC
Q 002123 278 RTLFVRNINSNVEDSE-L--KALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 278 rtLFVgNLP~~vTEed-L--relFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
-..|+.++-..+..+- | ...|+.|-.++..++ .++-++++|+.|.....-.++-..-+++++.-+++++.-.+
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 3455666666665554 3 556666655544432 57789999999998888888877777788887777776655
Q ss_pred CCCCCC--CccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEec-----CCCCceEEEeeCCHHHHHHHHHHhCCce
Q 002123 351 PKDNPS--EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSD 423 (964)
Q Consensus 351 ~k~~~~--~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~-----~~skGfaFVeF~d~esA~kAL~~LNG~~ 423 (964)
.-+++. +.+.....||++.|..+++++-|...|.+|-.....+++ .+++||+||.|.+..++..|+++|+|+.
T Consensus 177 swedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gky 256 (290)
T KOG0226|consen 177 SWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKY 256 (290)
T ss_pred ccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccc
Confidence 544432 345566799999999999999999999999766555554 4579999999999999999999999999
Q ss_pred eCCceEEEEeccCCc
Q 002123 424 VAGKQIKLEASRPGG 438 (964)
Q Consensus 424 I~Gr~LkV~~A~~k~ 438 (964)
++.++|++..+.-++
T Consensus 257 VgsrpiklRkS~wke 271 (290)
T KOG0226|consen 257 VGSRPIKLRKSEWKE 271 (290)
T ss_pred cccchhHhhhhhHHh
Confidence 999999987765544
No 119
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.9e-07 Score=102.51 Aligned_cols=80 Identities=20% Similarity=0.395 Sum_probs=74.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
...|...|||..|.+-+|+++|.-+|+.||+|.+|.+ +|.+..||||+|.+.+++++|.-.|++..|..+.|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 4567799999999999999999999999999999965 78899999999999999999999999999999999999
Q ss_pred ecCCC
Q 002123 348 YSIPK 352 (964)
Q Consensus 348 ~A~~k 352 (964)
|++.-
T Consensus 315 FSQSV 319 (479)
T KOG0415|consen 315 FSQSV 319 (479)
T ss_pred hhhhh
Confidence 98754
No 120
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.41 E-value=6e-07 Score=98.97 Aligned_cols=83 Identities=24% Similarity=0.449 Sum_probs=72.7
Q ss_pred CCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccC-Cccccccceee
Q 002123 269 EHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN-KPLRRRKLDIH 347 (964)
Q Consensus 269 e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng-~~i~Gr~L~V~ 347 (964)
..+.+....++|||++|...++|.+|++.|.+||+|+++.+ -..+++|||+|.+.++|+.|.++.-+ ..|.|++|.|.
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~-~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRI-LPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEe-ecccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 44556677899999999999999999999999999999988 45567999999999999999987655 46899999999
Q ss_pred ecCCC
Q 002123 348 YSIPK 352 (964)
Q Consensus 348 ~A~~k 352 (964)
|..++
T Consensus 299 Wg~~~ 303 (377)
T KOG0153|consen 299 WGRPK 303 (377)
T ss_pred eCCCc
Confidence 99883
No 121
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.36 E-value=5.4e-08 Score=116.69 Aligned_cols=140 Identities=14% Similarity=0.214 Sum_probs=121.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
...++||+||+..+.+++|...|..+|.|..+.+ .++.||+|||.|..++.|.+|+....+..+ |
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-g--------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-G--------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-h---------
Confidence 3478999999999999999999999998887754 688999999999999999999974444333 2
Q ss_pred CCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC----CCCceEEEeeCCHHHHHHHHHHhCCceeCC
Q 002123 351 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVAG 426 (964)
Q Consensus 351 ~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~----~skGfaFVeF~d~esA~kAL~~LNG~~I~G 426 (964)
...++|.|+|+..|.++|+.+|.++|.+++.+++. +.+|.+||.|.+..+|.+++..+....+.-
T Consensus 736 -----------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 736 -----------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRE 804 (881)
T ss_pred -----------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhh
Confidence 34689999999999999999999999999987653 468899999999999999999888888888
Q ss_pred ceEEEEeccC
Q 002123 427 KQIKLEASRP 436 (964)
Q Consensus 427 r~LkV~~A~~ 436 (964)
+.+.|..+.|
T Consensus 805 ~~~~v~vsnp 814 (881)
T KOG0128|consen 805 NNGEVQVSNP 814 (881)
T ss_pred cCccccccCC
Confidence 8888888776
No 122
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.35 E-value=6.2e-06 Score=94.59 Aligned_cols=153 Identities=11% Similarity=0.171 Sum_probs=104.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEE-EE----ecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRT-IY----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~s-vk----itgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
...-.|-+++||+.||++||.++|+..--|.. +. -.++..|=|||+|++.+.|++|+. -+...|.-|-|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 45678999999999999999999995543333 21 157788999999999999999997 4555555555555221
Q ss_pred C-----------------------CCCCCC--------------------------------------------Ccc---
Q 002123 350 I-----------------------PKDNPS--------------------------------------------EKD--- 359 (964)
Q Consensus 350 ~-----------------------~k~~~~--------------------------------------------~~~--- 359 (964)
. ++..+. .++
T Consensus 180 s~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~ 259 (510)
T KOG4211|consen 180 SRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNY 259 (510)
T ss_pred HHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccccc
Confidence 0 000000 000
Q ss_pred ------------------CCc-ceEEEeccCCCCcHHHHHHHhhccCce-EEEEe--cCCCCceEEEeeCCHHHHHHHHH
Q 002123 360 ------------------ANQ-GTLVVFNLDSSVSTEELHQIFGIYGEI-REIRD--TQHKHNHKFIEFYDIRAAETALR 417 (964)
Q Consensus 360 ------------------~~~-~tLfV~NLp~~vTeedLrelFs~fG~I-~sIri--~~~skGfaFVeF~d~esA~kAL~ 417 (964)
... ..+..+.||...++.++..+|+..-.+ ..|.+ ..+..|-|+|+|.+.++|..|+.
T Consensus 260 ~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 260 PVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 001 357778999999999999999986444 23333 33456789999999999999987
Q ss_pred HhCCceeCCceE
Q 002123 418 TLNRSDVAGKQI 429 (964)
Q Consensus 418 ~LNG~~I~Gr~L 429 (964)
-++..+..+-|
T Consensus 340 -kd~anm~hrYV 350 (510)
T KOG4211|consen 340 -KDGANMGHRYV 350 (510)
T ss_pred -cCCcccCccee
Confidence 34444444433
No 123
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=8e-07 Score=97.79 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=72.7
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
.+.+.|||.-|.+-+++++|.-+|+.||.|.+|.|+++ +-.||||+|++.+++++|.-.|++..|+.++|.|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 45679999999999999999999999999999998765 4569999999999999999999999999999999999
Q ss_pred cCCc
Q 002123 435 RPGG 438 (964)
Q Consensus 435 ~~k~ 438 (964)
+.-.
T Consensus 317 QSVs 320 (479)
T KOG0415|consen 317 QSVS 320 (479)
T ss_pred hhhh
Confidence 8654
No 124
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.27 E-value=2.2e-06 Score=95.21 Aligned_cols=161 Identities=11% Similarity=0.180 Sum_probs=118.0
Q ss_pred CcEEEEecCCCCCCHHHHHHhhccC-----Cc--EEEEEe-cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 277 SRTLFVRNINSNVEDSELKALFEQF-----GD--IRTIYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 277 srtLFVgNLP~~vTEedLrelFs~f-----G~--I~svki-tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
.-.|-.++||.++|+.++.++|.+- |. |.-|+- .|+..|=|||.|..+++|+.|+. -+...|.-|-|.+-.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHH
Confidence 4566779999999999999999622 22 333332 78899999999999999999997 344455555555533
Q ss_pred cCCCC-----------------C----------CCCccCCcceEEEeccCCCCcHHHHHHHhhccCc-eEE--EEec---
Q 002123 349 SIPKD-----------------N----------PSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGE-IRE--IRDT--- 395 (964)
Q Consensus 349 A~~k~-----------------~----------~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~-I~s--Iri~--- 395 (964)
+...+ . .........+|.+++||+..+.|+|.++|..|-. |.. |.++
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 21100 0 0011223679999999999999999999999865 333 4443
Q ss_pred -CCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCc
Q 002123 396 -QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (964)
Q Consensus 396 -~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~ 438 (964)
++..|-|||+|.+.|+|..|....+++...+|-|.|-.+.-.+
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ee 363 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEE 363 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHH
Confidence 2356779999999999999999998888889999988776543
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.23 E-value=2.7e-06 Score=88.38 Aligned_cols=81 Identities=19% Similarity=0.341 Sum_probs=73.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccC-CcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccce
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQF-GDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~f-G~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~ 345 (964)
........++|..+|.-+.+.++..+|.+| |.|+.+++ ||.+||||||+|++++.|.-|-+.||++.+.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 345567889999999999999999999999 77887776 899999999999999999999999999999999999
Q ss_pred eeecCCC
Q 002123 346 IHYSIPK 352 (964)
Q Consensus 346 V~~A~~k 352 (964)
|++-.|.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9987654
No 126
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.00 E-value=8.2e-06 Score=94.10 Aligned_cols=75 Identities=20% Similarity=0.380 Sum_probs=69.5
Q ss_pred cceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 002123 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
.++|+|.+|...+-..+|+.+|++||+|.-++|+.+ .+.||||++.+.++|.+||+.|+..++.|+.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 469999999999999999999999999999988754 467999999999999999999999999999999999864
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.99 E-value=1.1e-05 Score=93.19 Aligned_cols=77 Identities=18% Similarity=0.336 Sum_probs=69.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
.-.++|||.+|...+-..+|+.+|++||+|+-.++ +.-.|+|+||+..+.++|.+||+.|+.++|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34689999999999999999999999999998875 3457889999999999999999999999999999999887
Q ss_pred CC
Q 002123 350 IP 351 (964)
Q Consensus 350 ~~ 351 (964)
..
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 53
No 128
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.99 E-value=1.9e-05 Score=82.32 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=71.3
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhcc-CceEEEEe-----cCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIY-GEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~f-G~I~sIri-----~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
....+.+||..+|.-+.+.++...|.+| |.|..+++ +++++|||||+|++.+.|.-|-+.||+..+.++.|+|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3456789999999999999999999998 77888877 45689999999999999999999999999999999999
Q ss_pred eccCC
Q 002123 433 ASRPG 437 (964)
Q Consensus 433 ~A~~k 437 (964)
+-.|.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87775
No 129
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.92 E-value=1.7e-06 Score=96.94 Aligned_cols=148 Identities=18% Similarity=0.352 Sum_probs=123.2
Q ss_pred cEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCC---ccceEEEEeCCHHHHHHHHHHccCC-ccccccceeeecCCCC
Q 002123 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACK---HRGFVMISYYDIRAARNAMKALQNK-PLRRRKLDIHYSIPKD 353 (964)
Q Consensus 278 rtLFVgNLP~~vTEedLrelFs~fG~I~svkitgk---sRGfaFV~F~d~esA~kAl~~Lng~-~i~Gr~L~V~~A~~k~ 353 (964)
.++|++||.+.++.++|..+|...- +-.++. ..||+||.+.+..-|.+|++.++|+ ++.|+.+.|.++-++.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak----~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kk 77 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAK----IPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKK 77 (584)
T ss_pred CcccccccCCCCChHHHHHHhcccc----CCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHH
Confidence 4689999999999999999997541 001111 4689999999999999999999997 5899999999998776
Q ss_pred CCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-CCCc-eEEEeeCCHHHHHHHHHHhCCceeCCceEEE
Q 002123 354 NPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-HKHN-HKFIEFYDIRAAETALRTLNRSDVAGKQIKL 431 (964)
Q Consensus 354 ~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-~skG-faFVeF~d~esA~kAL~~LNG~~I~Gr~LkV 431 (964)
.+ .+++-|+|+|+...++.|..+..+||.++.|..+. ++.. ..=|+|...+.+..|+..|+|..+....++|
T Consensus 78 qr------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~ 151 (584)
T KOG2193|consen 78 QR------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKV 151 (584)
T ss_pred HH------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhc
Confidence 54 34599999999999999999999999999987643 2222 3457899999999999999999999999999
Q ss_pred Eecc
Q 002123 432 EASR 435 (964)
Q Consensus 432 ~~A~ 435 (964)
.|--
T Consensus 152 ~YiP 155 (584)
T KOG2193|consen 152 GYIP 155 (584)
T ss_pred ccCc
Confidence 8754
No 130
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.90 E-value=2e-05 Score=93.36 Aligned_cols=84 Identities=20% Similarity=0.394 Sum_probs=74.3
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe--------cCCccceEEEEeCCHHHHHHHHHHccCCcc
Q 002123 268 GEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--------ACKHRGFVMISYYDIRAARNAMKALQNKPL 339 (964)
Q Consensus 268 ~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki--------tgksRGfaFV~F~d~esA~kAl~~Lng~~i 339 (964)
+.........++|||+||++.++++.|...|..||+|.++++ ....+-+|||.|-+..+|++|++.|+|..+
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 344445667899999999999999999999999999999987 344677999999999999999999999999
Q ss_pred ccccceeeecCC
Q 002123 340 RRRKLDIHYSIP 351 (964)
Q Consensus 340 ~Gr~L~V~~A~~ 351 (964)
.+.++++.|+.+
T Consensus 245 ~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 245 MEYEMKLGWGKA 256 (877)
T ss_pred eeeeeeeccccc
Confidence 999999999843
No 131
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.87 E-value=3.1e-05 Score=83.62 Aligned_cols=81 Identities=26% Similarity=0.374 Sum_probs=72.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
.+....+|+|.|||..|+++||+++|++||.+..+-+ .|.+.|.|-|.|...++|..|++.++|..+.|+.+.+..
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445589999999999999999999999998887765 788999999999999999999999999999999999987
Q ss_pred cCCCC
Q 002123 349 SIPKD 353 (964)
Q Consensus 349 A~~k~ 353 (964)
..+..
T Consensus 159 i~~~~ 163 (243)
T KOG0533|consen 159 ISSPS 163 (243)
T ss_pred ecCcc
Confidence 76543
No 132
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.86 E-value=2e-05 Score=93.42 Aligned_cols=78 Identities=28% Similarity=0.381 Sum_probs=71.6
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC--------CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEE
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ--------HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~--------~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~Lk 430 (964)
+...++|||.||++.++++.|...|+.||.|.+|+|+- ..+.+|||-|-+..+|++|++.|+|..|.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 55678999999999999999999999999999999862 2467999999999999999999999999999999
Q ss_pred EEeccC
Q 002123 431 LEASRP 436 (964)
Q Consensus 431 V~~A~~ 436 (964)
+.|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999965
No 133
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.83 E-value=4.9e-05 Score=79.89 Aligned_cols=80 Identities=21% Similarity=0.302 Sum_probs=66.6
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEE--EEecCCC----CceEEEeeCCHHHHHHHHHHhCCceeC---CceEEE
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIRE--IRDTQHK----HNHKFIEFYDIRAAETALRTLNRSDVA---GKQIKL 431 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~s--Iri~~~s----kGfaFVeF~d~esA~kAL~~LNG~~I~---Gr~LkV 431 (964)
..+||||.+||.++...+|..+|..|---+. ++.+.+. +-+|||.|.+.++|.+|+.+|||..++ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 4689999999999999999999999854444 3444332 368999999999999999999999985 899999
Q ss_pred EeccCCchh
Q 002123 432 EASRPGGAR 440 (964)
Q Consensus 432 ~~A~~k~~r 440 (964)
++|+....+
T Consensus 113 ElAKSNtK~ 121 (284)
T KOG1457|consen 113 ELAKSNTKR 121 (284)
T ss_pred eehhcCccc
Confidence 999875543
No 134
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.83 E-value=1.4e-05 Score=83.66 Aligned_cols=77 Identities=19% Similarity=0.186 Sum_probs=68.8
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC---CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCC
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~---skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k 437 (964)
..+||||.|+...++++-|.++|-+-|.|..|.|... ...||||.|.++....-|++.|||..+.++.|+|++-...
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGN 87 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccCC
Confidence 4579999999999999999999999999999988653 2239999999999999999999999999999999886643
No 135
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.82 E-value=1.8e-05 Score=91.40 Aligned_cols=74 Identities=27% Similarity=0.451 Sum_probs=63.1
Q ss_pred CcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe---c--CCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCC
Q 002123 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---A--CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (964)
Q Consensus 277 srtLFVgNLP~~vTEedLrelFs~fG~I~svki---t--gksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~ 351 (964)
..+|||+|||.++++++|+++|.+||.|+...+ . ++..+||||+|.+.++++.||++ +-..|.+++|.|+--.+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 456999999999999999999999999998865 2 44459999999999999999984 46678899999975443
No 136
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.68 E-value=5e-05 Score=87.87 Aligned_cols=75 Identities=25% Similarity=0.443 Sum_probs=64.0
Q ss_pred ceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCC
Q 002123 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (964)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k 437 (964)
.+|||+|||.+++.++|+++|..||.|+..+|..+ ...||||+|++..+++.||.+ +-..|++++|.|+-.++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 46999999999999999999999999998666421 237999999999999999995 477789999999877664
Q ss_pred c
Q 002123 438 G 438 (964)
Q Consensus 438 ~ 438 (964)
-
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 3
No 137
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.68 E-value=0.00012 Score=79.32 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=69.3
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
...+|+|.|||..|+++||+++|..||.++.+-+.. .+.|.|-|.|...++|..|++.+||..++|+.+++....+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 456899999999999999999999999888877643 3678999999999999999999999999999999988776
Q ss_pred Cc
Q 002123 437 GG 438 (964)
Q Consensus 437 k~ 438 (964)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 44
No 138
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.66 E-value=8e-05 Score=88.13 Aligned_cols=166 Identities=14% Similarity=0.064 Sum_probs=122.3
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhcc-CC---cEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQ-FG---DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 271 ~~~e~~srtLFVgNLP~~vTEedLrelFs~-fG---~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
+......+.+-+++.+.+..+.|++++|.. +- .|...++.+...|-++|.|....++++|++ -+...+..|.+.|
T Consensus 305 pqvv~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~ 383 (944)
T KOG4307|consen 305 PQVVSDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQT 383 (944)
T ss_pred CcccchhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceee
Confidence 334455677778999999999999999972 22 233334445558999999999999999996 5556666677666
Q ss_pred eecCCC------------CCC--------------C---------CccCCcceEEEeccCCCCcHHHHHHHhhccCceEE
Q 002123 347 HYSIPK------------DNP--------------S---------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE 391 (964)
Q Consensus 347 ~~A~~k------------~~~--------------~---------~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~s 391 (964)
.-+... ... . -......+|||+.||..+++.++-++|...-.|++
T Consensus 384 ~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved 463 (944)
T KOG4307|consen 384 GPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVED 463 (944)
T ss_pred cCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhh
Confidence 432111 000 0 01112458999999999999999999999777766
Q ss_pred -EEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCC
Q 002123 392 -IRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (964)
Q Consensus 392 -Iri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k 437 (964)
|.+..- .++.|||.|..++++.+|+..-+...++.+.|+|.-...+
T Consensus 464 ~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 464 FIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred eeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 776542 4668999999999999999877888889999999875543
No 139
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.63 E-value=0.00018 Score=79.97 Aligned_cols=80 Identities=21% Similarity=0.425 Sum_probs=70.6
Q ss_pred CCCcEEE-EecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 275 HPSRTLF-VRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 275 ~~srtLF-VgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
.+..++| |++|+.++++++|++.|..+|.|..+++ ++..+|||||.|.....+..|+.. +...+.++++.+.+
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3455565 9999999999999999999999999986 688999999999999999999987 88899999999999
Q ss_pred cCCCCCC
Q 002123 349 SIPKDNP 355 (964)
Q Consensus 349 A~~k~~~ 355 (964)
..+....
T Consensus 261 ~~~~~~~ 267 (285)
T KOG4210|consen 261 DEPRPKS 267 (285)
T ss_pred CCCCccc
Confidence 8776443
No 140
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.60 E-value=0.00012 Score=81.21 Aligned_cols=74 Identities=15% Similarity=0.344 Sum_probs=66.5
Q ss_pred cceEEEeccCCCCcHHHHHHHhhccCceEE--------EEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCCceE
Q 002123 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIRE--------IRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429 (964)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~s--------Iri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~L 429 (964)
...|||.|||.++|.+++.++|++||.|.+ |++..+ -||=|.++|...++..-|++.|++..+.|+.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 456999999999999999999999999875 566543 56779999999999999999999999999999
Q ss_pred EEEecc
Q 002123 430 KLEASR 435 (964)
Q Consensus 430 kV~~A~ 435 (964)
+|+.|+
T Consensus 214 rVerAk 219 (382)
T KOG1548|consen 214 RVERAK 219 (382)
T ss_pred EEehhh
Confidence 999985
No 141
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.56 E-value=0.00028 Score=66.44 Aligned_cols=73 Identities=21% Similarity=0.368 Sum_probs=59.9
Q ss_pred cEEEEecCCCCCCHHHHHHhhccC--CcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccc----ccccee
Q 002123 278 RTLFVRNINSNVEDSELKALFEQF--GDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLR----RRKLDI 346 (964)
Q Consensus 278 rtLFVgNLP~~vTEedLrelFs~f--G~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~----Gr~L~V 346 (964)
+||.|+|||...|.++|.+++... |...-+++ ++.+.|||||.|.+++.|.+..+.++|+.+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999988743 44444443 5678999999999999999999999998775 356777
Q ss_pred eecC
Q 002123 347 HYSI 350 (964)
Q Consensus 347 ~~A~ 350 (964)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7774
No 142
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.52 E-value=8.8e-05 Score=79.39 Aligned_cols=77 Identities=19% Similarity=0.358 Sum_probs=66.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEE-----ecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svk-----itgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
....-+||.+.|.-+++++-|...|.+|-.....+ -+++++||+||.|.++.++..|+++|+|+.+..++|.+.-
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 34457899999999999999999999886543332 3799999999999999999999999999999999998865
Q ss_pred cC
Q 002123 349 SI 350 (964)
Q Consensus 349 A~ 350 (964)
+.
T Consensus 267 S~ 268 (290)
T KOG0226|consen 267 SE 268 (290)
T ss_pred hh
Confidence 54
No 143
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.52 E-value=0.00012 Score=79.01 Aligned_cols=80 Identities=16% Similarity=0.304 Sum_probs=70.7
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
..+.+.+.+||+|+...+|.+++...|+-||.|..+.+ .+..|||+||+|.+.+.+++|++ |+|..|.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 45667899999999999999999999999999975543 56789999999999999999998 9999999999999
Q ss_pred eecCCC
Q 002123 347 HYSIPK 352 (964)
Q Consensus 347 ~~A~~k 352 (964)
.+....
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 876543
No 144
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.52 E-value=0.00042 Score=63.25 Aligned_cols=69 Identities=23% Similarity=0.307 Sum_probs=48.2
Q ss_pred ceEEEeccCCCCcHHH----HHHHhhcc-CceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 002123 363 GTLVVFNLDSSVSTEE----LHQIFGIY-GEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 363 ~tLfV~NLp~~vTeed----LrelFs~f-G~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
..|+|.|||.+.+... |++++.-+ |.|.+|. .+-|+|.|.+.+.|++|++.|+|..+-|.+|.|.+...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 5799999999988654 66677777 5677763 68899999999999999999999999999999999753
No 145
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.47 E-value=0.00013 Score=78.77 Aligned_cols=80 Identities=23% Similarity=0.380 Sum_probs=70.2
Q ss_pred CccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEec-----CCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEE
Q 002123 357 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL 431 (964)
Q Consensus 357 ~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~-----~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV 431 (964)
.+......+||+|++..++.+++..+|+.||.|..+.+. ++.|||+||+|.+.+.+++|+. |+|..|.|+.|.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 344566789999999999999999999999999866554 3478999999999999999999 9999999999999
Q ss_pred EeccCC
Q 002123 432 EASRPG 437 (964)
Q Consensus 432 ~~A~~k 437 (964)
.+.+-.
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 987754
No 146
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.46 E-value=5.3e-05 Score=84.87 Aligned_cols=146 Identities=18% Similarity=0.170 Sum_probs=113.2
Q ss_pred cEEEEecCCCCCCHHHHHHhhccCCcEEEEEec--------CCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTA--------CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 278 rtLFVgNLP~~vTEedLrelFs~fG~I~svkit--------gksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
..|.|.||.+++|.++++.+|...|+|..+++- ....-.|||.|.|...+..|-- |.++++-++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 489999999999999999999999999999761 2245689999999999888875 8888777776666332
Q ss_pred CCCCCC-------------------------------CCc---------------------cCCcceEEEeccCCCCcHH
Q 002123 350 IPKDNP-------------------------------SEK---------------------DANQGTLVVFNLDSSVSTE 377 (964)
Q Consensus 350 ~~k~~~-------------------------------~~~---------------------~~~~~tLfV~NLp~~vTee 377 (964)
.....+ ... ..-.++++|.+|...+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 111000 000 0012589999999999999
Q ss_pred HHHHHhhccCceEEEEecCC-CCceEEEeeCCHHHHHHHHHHhCCceeC
Q 002123 378 ELHQIFGIYGEIREIRDTQH-KHNHKFIEFYDIRAAETALRTLNRSDVA 425 (964)
Q Consensus 378 dLrelFs~fG~I~sIri~~~-skGfaFVeF~d~esA~kAL~~LNG~~I~ 425 (964)
++-+.|..+|+|.+.++..+ ..-++.|+|........|++ ++|..+.
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 99999999999999887543 45678899999999999998 6777665
No 147
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.43 E-value=0.00043 Score=77.54 Aligned_cols=158 Identities=16% Similarity=0.213 Sum_probs=112.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcc-----CCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQ-----FGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~-----fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
..+..|-.++||+...+.+|..+|.- -|.+......++..|.|.|.|.|.|.-+-|++ -+...+.++.|.|-.+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 34456667899999999999999973 33444444568888999999999999999997 5666777888888655
Q ss_pred CCCCC---------CCC---ccCCcceEEEeccCCCCcHHHHHHHhhcc----CceEEEEec----CCCCceEEEeeCCH
Q 002123 350 IPKDN---------PSE---KDANQGTLVVFNLDSSVSTEELHQIFGIY----GEIREIRDT----QHKHNHKFIEFYDI 409 (964)
Q Consensus 350 ~~k~~---------~~~---~~~~~~tLfV~NLp~~vTeedLrelFs~f----G~I~sIri~----~~skGfaFVeF~d~ 409 (964)
...+- ... .+.+.-.|..++||+++++.++.++|.+- |..+.|..+ ++..|-|||.|..+
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACE 216 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCH
Confidence 44321 111 11234467788999999999999999742 233344333 23567899999999
Q ss_pred HHHHHHHHHhCCceeCCceEEEEec
Q 002123 410 RAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 410 esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
++|+.||. -|...|+-|-|.+-.+
T Consensus 217 e~aq~aL~-khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 217 EDAQFALR-KHRQNIGQRYIELFRS 240 (508)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHH
Confidence 99999998 4566666666655443
No 148
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00063 Score=79.05 Aligned_cols=160 Identities=15% Similarity=0.160 Sum_probs=96.8
Q ss_pred CCCccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCC----hhhhhccCCCC---eeeeecCC
Q 002123 147 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD----EDDLFSGVTDD---MGHNFQAN 218 (964)
Q Consensus 147 sl~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpd----EdDL~sG~SkG---fGFV~f~~ 218 (964)
...+||++.|++ |+++.+... | ..||.+.-| ....-..-.+| |-|..|.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~--------------F--------~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe- 314 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINAS--------------F--------GQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFE- 314 (520)
T ss_pred cccceeecCCCccccHHHHHhh--------------c--------ccccceEeecCCCccccccCCCCCcccEEEEEec-
Confidence 446799999999 998888877 7 444444331 11111233555 8888854
Q ss_pred Chhhhh-hhHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHh
Q 002123 219 TVDDLE-DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKAL 297 (964)
Q Consensus 219 t~edae-ei~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrel 297 (964)
.+..+. -+++.....+..+- ++.+......... .......++.........-.+.+|||||+||.-++.++|..+
T Consensus 315 ~E~sV~~Ll~aC~~~~~~~yf---~vss~~~k~k~VQ-IrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~i 390 (520)
T KOG0129|consen 315 DERSVQSLLSACSEGEGNYYF---KVSSPTIKDKEVQ-IRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMI 390 (520)
T ss_pred chHHHHHHHHHHhhcccceEE---EEecCccccccee-EEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHH
Confidence 444433 22333322222111 0111111110000 000111222222234456678899999999999999999999
Q ss_pred hc-cCCcEEEEEe--c---CCccceEEEEeCCHHHHHHHHHH
Q 002123 298 FE-QFGDIRTIYT--A---CKHRGFVMISYYDIRAARNAMKA 333 (964)
Q Consensus 298 Fs-~fG~I~svki--t---gksRGfaFV~F~d~esA~kAl~~ 333 (964)
|+ -||.|..+-| . +-.+|-|-|+|.+..+-.+||.+
T Consensus 391 md~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 391 MEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred HHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 99 8999998865 2 44789999999999999999973
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.20 E-value=0.00041 Score=66.15 Aligned_cols=77 Identities=22% Similarity=0.391 Sum_probs=50.0
Q ss_pred eEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCc-----eeCCceEEEEeccCCc
Q 002123 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRS-----DVAGKQIKLEASRPGG 438 (964)
Q Consensus 364 tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~-----~I~Gr~LkV~~A~~k~ 438 (964)
.|.|.+++..++.++|++.|++||.|..|.+... ..-|||.|.+.++|++|+..+.-. .|.+..+.++.-.-.+
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLeGee 81 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLEGEE 81 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT--SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---HHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECCCHH
Confidence 5889999999999999999999999999987653 557999999999999999877544 5788888888766555
Q ss_pred hhh
Q 002123 439 ARR 441 (964)
Q Consensus 439 ~r~ 441 (964)
+..
T Consensus 82 E~~ 84 (105)
T PF08777_consen 82 EEE 84 (105)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.11 E-value=0.0014 Score=59.97 Aligned_cols=69 Identities=19% Similarity=0.382 Sum_probs=48.9
Q ss_pred cEEEEecCCCCCCHHHH----HHhhccCC-cEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCC
Q 002123 278 RTLFVRNINSNVEDSEL----KALFEQFG-DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (964)
Q Consensus 278 rtLFVgNLP~~vTEedL----relFs~fG-~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~ 351 (964)
..|+|.|||.+.+-..| +.++..|| +|..| ..+.|+|.|.+.+.|++|.+.|+|..+.|++|.|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 46999999999987654 56777776 67665 358999999999999999999999999999999999843
No 151
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.01 E-value=0.00086 Score=81.65 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=66.7
Q ss_pred CcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCC
Q 002123 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (964)
Q Consensus 277 srtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~ 351 (964)
...|||.|.|+..|.++|+.++..+|.+.++++ .|+.+|-|||.|.+..+|.+++...+...+.-+.+.|..+.|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 356899999999999999999999999999865 689999999999999999999988888888777777777655
No 152
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.92 E-value=0.0012 Score=72.99 Aligned_cols=76 Identities=26% Similarity=0.393 Sum_probs=63.1
Q ss_pred CcEEEEecCCCCCCHHHH------HHhhccCCcEEEEEecCCc------cc--eEEEEeCCHHHHHHHHHHccCCccccc
Q 002123 277 SRTLFVRNINSNVEDSEL------KALFEQFGDIRTIYTACKH------RG--FVMISYYDIRAARNAMKALQNKPLRRR 342 (964)
Q Consensus 277 srtLFVgNLP~~vTEedL------relFs~fG~I~svkitgks------RG--faFV~F~d~esA~kAl~~Lng~~i~Gr 342 (964)
..-|||-+||+.+..++. .++|.+||+|..|.+..+. .+ =.||+|.+.++|.+||.+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 456899999999988773 2799999999999763321 22 249999999999999999999999999
Q ss_pred cceeeecCCC
Q 002123 343 KLDIHYSIPK 352 (964)
Q Consensus 343 ~L~V~~A~~k 352 (964)
.|+..|...|
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999988654
No 153
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.81 E-value=0.0019 Score=73.66 Aligned_cols=86 Identities=27% Similarity=0.323 Sum_probs=65.3
Q ss_pred ecCCCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC------------------CCceEEEeeCCH
Q 002123 348 YSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH------------------KHNHKFIEFYDI 409 (964)
Q Consensus 348 ~A~~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~------------------skGfaFVeF~d~ 409 (964)
+-.|-.+......+.++|.+.|||.+-.-+.|.++|+.+|.|+.|+|..- .+-+|+|+|...
T Consensus 217 RisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~ 296 (484)
T KOG1855|consen 217 RISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEV 296 (484)
T ss_pred ecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhh
Confidence 33333444455567899999999999999999999999999999998531 144699999999
Q ss_pred HHHHHHHHHhCCceeCCceEEEEe
Q 002123 410 RAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 410 esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
+.|.+|.+.|+...-.-.-++|.+
T Consensus 297 ~~A~KA~e~~~~e~~wr~glkvkL 320 (484)
T KOG1855|consen 297 EAARKARELLNPEQNWRMGLKVKL 320 (484)
T ss_pred HHHHHHHHhhchhhhhhhcchhhh
Confidence 999999998866544333344433
No 154
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.78 E-value=0.0039 Score=69.08 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=65.7
Q ss_pred CcceEEEeccCCCCcHHH------HHHHhhccCceEEEEecCCC-------Cce-EEEeeCCHHHHHHHHHHhCCceeCC
Q 002123 361 NQGTLVVFNLDSSVSTEE------LHQIFGIYGEIREIRDTQHK-------HNH-KFIEFYDIRAAETALRTLNRSDVAG 426 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeed------LrelFs~fG~I~sIri~~~s-------kGf-aFVeF~d~esA~kAL~~LNG~~I~G 426 (964)
...-+||-+|++.+.+|+ -.++|++||.|..|.|.++- .++ .||+|.+.|+|..||.+.+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 456789999999888776 24799999999999886541 223 4999999999999999999999999
Q ss_pred ceEEEEeccCCch
Q 002123 427 KQIKLEASRPGGA 439 (964)
Q Consensus 427 r~LkV~~A~~k~~ 439 (964)
|.|+..+...|--
T Consensus 193 r~lkatYGTTKYC 205 (480)
T COG5175 193 RVLKATYGTTKYC 205 (480)
T ss_pred ceEeeecCchHHH
Confidence 9999999876543
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.61 E-value=0.0055 Score=58.56 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=39.6
Q ss_pred cEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCC
Q 002123 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNK 337 (964)
Q Consensus 278 rtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~ 337 (964)
+.|+|.+++..++-++|++.|++||+|..|.. .+...-|||.|.+.++|++|++.+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~-~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDF-SRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEe-cCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 56899999999999999999999999999987 334458999999999999999977544
No 156
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.40 E-value=0.007 Score=50.80 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=43.4
Q ss_pred ceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHH
Q 002123 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETAL 416 (964)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL 416 (964)
+.|-|.+.+....+. +...|..||+|..+.+. ......||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 468888888776654 55588899999999887 34779999999999999996
No 157
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.38 E-value=0.0036 Score=71.42 Aligned_cols=77 Identities=27% Similarity=0.452 Sum_probs=62.9
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCC-------------------ccceEEEEeCCHHHHHHHH
Q 002123 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACK-------------------HRGFVMISYYDIRAARNAM 331 (964)
Q Consensus 271 ~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgk-------------------sRGfaFV~F~d~esA~kAl 331 (964)
..++.++++|.+-|||.+-..+-|.++|..+|.|..|+| ++ .+-+|+|+|...+.|.+|.
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRI-ckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRI-CKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeee-cCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 446679999999999999999999999999999999987 11 2558999999999999999
Q ss_pred HHccCCccccccceeee
Q 002123 332 KALQNKPLRRRKLDIHY 348 (964)
Q Consensus 332 ~~Lng~~i~Gr~L~V~~ 348 (964)
+.|+...-+-.-|+|..
T Consensus 304 e~~~~e~~wr~glkvkL 320 (484)
T KOG1855|consen 304 ELLNPEQNWRMGLKVKL 320 (484)
T ss_pred Hhhchhhhhhhcchhhh
Confidence 97766554444444443
No 158
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.23 E-value=0.014 Score=55.38 Aligned_cols=74 Identities=20% Similarity=0.304 Sum_probs=54.0
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEE------------ecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCc-
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIR------------DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGK- 427 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIr------------i~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr- 427 (964)
....|.|.+.|+. ....+.+.|++||+|.+.. -.........|+|.++.+|.+||. -||..++|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3467999999998 5566788999999998875 122346789999999999999999 899999885
Q ss_pred eEEEEeccC
Q 002123 428 QIKLEASRP 436 (964)
Q Consensus 428 ~LkV~~A~~ 436 (964)
.+-|.++++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 555777643
No 159
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.22 E-value=0.0072 Score=65.27 Aligned_cols=87 Identities=23% Similarity=0.306 Sum_probs=73.1
Q ss_pred HHHHHHHHccCCccccccceeeecCCCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC----CCCce
Q 002123 326 AARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ----HKHNH 401 (964)
Q Consensus 326 sA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~----~skGf 401 (964)
-|+.|-.+|++....|+.+.|.|+.. ..|||.||..-++.|.|.+.|..||.|....+.- +..+-
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~e 74 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTRE 74 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccccccccc
Confidence 47778888999999999999999963 4699999999999999999999999998744332 24456
Q ss_pred EEEeeCCHHHHHHHHHHhCCce
Q 002123 402 KFIEFYDIRAAETALRTLNRSD 423 (964)
Q Consensus 402 aFVeF~d~esA~kAL~~LNG~~ 423 (964)
++|.|...-.|.+|++..+-.-
T Consensus 75 g~v~~~~k~~a~~a~rr~~~~g 96 (275)
T KOG0115|consen 75 GIVEFAKKPNARKAARRCREGG 96 (275)
T ss_pred chhhhhcchhHHHHHHHhccCc
Confidence 8999999999999999775443
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.20 E-value=0.0091 Score=50.12 Aligned_cols=52 Identities=19% Similarity=0.429 Sum_probs=43.7
Q ss_pred cEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHH
Q 002123 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAM 331 (964)
Q Consensus 278 rtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl 331 (964)
+.|-|.+.+++..+. +...|..||+|..+.++ ...-+.||+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 578889999876654 55589999999999984 56779999999999999985
No 161
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.14 E-value=0.0064 Score=74.70 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=71.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCcccc--ccceeeecC
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSI 350 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~G--r~L~V~~A~ 350 (964)
...+.+.+||++|++.+.-..|...|..||.|..|.+ ....-||||.|++...|+.|++.|-|..|.+ +.+.|.|+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy-~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY-RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeec-ccCCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 4456799999999999999999999999999999988 5566799999999999999999999999987 789999987
Q ss_pred CCC
Q 002123 351 PKD 353 (964)
Q Consensus 351 ~k~ 353 (964)
+..
T Consensus 530 ~~~ 532 (975)
T KOG0112|consen 530 PPG 532 (975)
T ss_pred CCC
Confidence 543
No 162
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.08 E-value=0.0065 Score=68.33 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=71.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEE-------------ecCCccceEEEEeCCHHHHHHHHHHccCCcc
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-------------TACKHRGFVMISYYDIRAARNAMKALQNKPL 339 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svk-------------itgksRGfaFV~F~d~esA~kAl~~Lng~~i 339 (964)
.....-+|||-+||..+++++|.++|.+||.|..=+ .|++.||=|.|+|.|..+|+.|+..++++.+
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 345568999999999999999999999999886432 2788999999999999999999999999999
Q ss_pred ccccceeeecCCCC
Q 002123 340 RRRKLDIHYSIPKD 353 (964)
Q Consensus 340 ~Gr~L~V~~A~~k~ 353 (964)
.+.+|+|..|..+.
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 99999998886543
No 163
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.83 E-value=0.0076 Score=67.79 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=68.2
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEE--------EEec-----CCCCceEEEeeCCHHHHHHHHHHhCCceeCCc
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIRE--------IRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGK 427 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~s--------Iri~-----~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr 427 (964)
...+|||-+|+..+++++|.++|.++|.|+. |.+. ...|+-|.|.|.|...|+.|+.-++++.+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4568999999999999999999999999975 2222 23688899999999999999999999999999
Q ss_pred eEEEEeccCCc
Q 002123 428 QIKLEASRPGG 438 (964)
Q Consensus 428 ~LkV~~A~~k~ 438 (964)
+|+|.+|..+.
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999988654
No 164
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.71 E-value=0.0055 Score=66.20 Aligned_cols=62 Identities=27% Similarity=0.370 Sum_probs=51.5
Q ss_pred HHHHHHhh-ccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCc
Q 002123 377 EELHQIFG-IYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (964)
Q Consensus 377 edLrelFs-~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~ 438 (964)
++|...|+ +||+|+++.|-.+ -.|-+||.|...++|++|++.||+..++|++|.+.+..-..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 55666666 8999999876433 46779999999999999999999999999999999876433
No 165
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.55 E-value=0.011 Score=63.84 Aligned_cols=68 Identities=22% Similarity=0.394 Sum_probs=59.8
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-------------C--Cce--EEEeeCCHHHHHHHHHHhCCce
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-------------K--HNH--KFIEFYDIRAAETALRTLNRSD 423 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-------------s--kGf--aFVeF~d~esA~kAL~~LNG~~ 423 (964)
..+.||+.+||+..+-..|+++|++||+|-.|.+.+. + ..| |.|+|.+...|......||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5689999999999999999999999999999988642 1 112 8999999999999999999999
Q ss_pred eCCce
Q 002123 424 VAGKQ 428 (964)
Q Consensus 424 I~Gr~ 428 (964)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 166
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.55 E-value=0.025 Score=67.95 Aligned_cols=71 Identities=20% Similarity=0.291 Sum_probs=62.1
Q ss_pred cEEEEecCCCCCCHHHHHHhhccCCcEE-EEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 278 RTLFVRNINSNVEDSELKALFEQFGDIR-TIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 278 rtLFVgNLP~~vTEedLrelFs~fG~I~-svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
+.|-+.|+|++++-+||.++|..|-.+- +|++ .|+..|-|.|.|++.++|..|...|+++.|..|++++..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 5889999999999999999999997542 2332 688899999999999999999999999999999988753
No 167
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.32 E-value=0.033 Score=52.90 Aligned_cols=72 Identities=13% Similarity=0.198 Sum_probs=52.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEEE------------ecCCccceEEEEeCCHHHHHHHHHHccCCccccc-
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIY------------TACKHRGFVMISYYDIRAARNAMKALQNKPLRRR- 342 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~svk------------itgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr- 342 (964)
..+-|.|=+.|+. ....+.+.|++||+|.+.. -......+..|+|.++.+|++||. .||..+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3567889999988 6677888999999999885 113456699999999999999997 899999885
Q ss_pred cceeeec
Q 002123 343 KLDIHYS 349 (964)
Q Consensus 343 ~L~V~~A 349 (964)
.+-|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4446665
No 168
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.20 E-value=0.067 Score=53.97 Aligned_cols=76 Identities=29% Similarity=0.389 Sum_probs=54.0
Q ss_pred CCcceEEEeccCC------CCcH---HHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEE
Q 002123 360 ANQGTLVVFNLDS------SVST---EELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (964)
Q Consensus 360 ~~~~tLfV~NLp~------~vTe---edLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~Lk 430 (964)
.+..||.|.=+.+ ..++ .+|.+.|..||++.=||+.. +.-.|+|.+-+.|.+|+. |+|..|+|+.|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 4556777775551 2222 36788899999998888765 478999999999999999 999999999999
Q ss_pred EEeccCCch
Q 002123 431 LEASRPGGA 439 (964)
Q Consensus 431 V~~A~~k~~ 439 (964)
|++..|.-.
T Consensus 101 i~LKtpdW~ 109 (146)
T PF08952_consen 101 IRLKTPDWL 109 (146)
T ss_dssp EEE------
T ss_pred EEeCCccHH
Confidence 999887543
No 169
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.95 E-value=0.046 Score=60.08 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=51.1
Q ss_pred HHHHHHHhhccCceEEEEecCC------CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 002123 376 TEELHQIFGIYGEIREIRDTQH------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 376 eedLrelFs~fG~I~sIri~~~------skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
++++++.+++||.|..|.|... ..---||+|...++|.+|+-.|||+.++||.+...+..-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 5678999999999998876432 122379999999999999999999999999999887653
No 170
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.91 E-value=0.016 Score=62.72 Aligned_cols=68 Identities=18% Similarity=0.404 Sum_probs=59.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEec-------------CCccc----eEEEEeCCHHHHHHHHHHccCCc
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA-------------CKHRG----FVMISYYDIRAARNAMKALQNKP 338 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~svkit-------------gksRG----faFV~F~d~esA~kAl~~Lng~~ 338 (964)
..-.||+++||+.+.-.-|+++|++||.|-.|++. +.++. =|+|+|.+...|..+.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 66789999999999999999999999999999862 12222 37899999999999999999999
Q ss_pred ccccc
Q 002123 339 LRRRK 343 (964)
Q Consensus 339 i~Gr~ 343 (964)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 171
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.30 E-value=0.035 Score=62.07 Aligned_cols=73 Identities=16% Similarity=0.284 Sum_probs=60.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCC--cEEEE-----EecCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFG--DIRTI-----YTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG--~I~sv-----kitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
+.....+||+||-|.+|++||.+....-| .|.++ +..|++||||.|...+..+.++.|+.|-.++|.|..-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 33456899999999999999999887665 33333 347999999999999999999999999999999876555
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.95 E-value=0.024 Score=61.39 Aligned_cols=57 Identities=19% Similarity=0.320 Sum_probs=47.8
Q ss_pred HHHHhhc-cCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 293 ELKALFE-QFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 293 dLrelFs-~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
+|...|+ +||+|+++.+ .-.-+|-+||.|...++|++|++.||+..+.|++|...+.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3444444 9999999876 2235789999999999999999999999999999998876
No 173
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.69 E-value=0.065 Score=63.32 Aligned_cols=72 Identities=21% Similarity=0.362 Sum_probs=57.1
Q ss_pred CCCcEEEEecCCCCCC------HHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccc-ccc
Q 002123 275 HPSRTLFVRNINSNVE------DSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLR-RRK 343 (964)
Q Consensus 275 ~~srtLFVgNLP~~vT------EedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~-Gr~ 343 (964)
.-...|+|-|+|---. ..-|.++|+++|+|..+.+ .++.+||.|++|.+..+|+.|++.|||+.|. .+.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3457889999985221 2245579999999999976 5779999999999999999999999998775 355
Q ss_pred cee
Q 002123 344 LDI 346 (964)
Q Consensus 344 L~V 346 (964)
+.|
T Consensus 136 f~v 138 (698)
T KOG2314|consen 136 FFV 138 (698)
T ss_pred EEe
Confidence 555
No 174
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=93.55 E-value=0.071 Score=60.61 Aligned_cols=71 Identities=20% Similarity=0.401 Sum_probs=59.3
Q ss_pred ceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC--------CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH--------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~--------skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
+.|.|.||.+.++.++++.+|.-.|+|.++++++. ....|||.|.|...+..|.. |.+..+=++.|.|-++
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 47999999999999999999999999999999763 23469999999999999987 6666666666666544
No 175
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.48 E-value=0.22 Score=59.03 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=60.0
Q ss_pred CCcceEEEeccCCCCc------HHHHHHHhhccCceEEEEec----CCCCceEEEeeCCHHHHHHHHHHhCCceeC-Cce
Q 002123 360 ANQGTLVVFNLDSSVS------TEELHQIFGIYGEIREIRDT----QHKHNHKFIEFYDIRAAETALRTLNRSDVA-GKQ 428 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vT------eedLrelFs~fG~I~sIri~----~~skGfaFVeF~d~esA~kAL~~LNG~~I~-Gr~ 428 (964)
.....|+|.|+|.--. ..-|.++|+++|+|....++ +..+||.|++|.+..+|+.|++.|||+.++ ..+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3456889999885322 34577899999999988775 347899999999999999999999999985 567
Q ss_pred EEEEecc
Q 002123 429 IKLEASR 435 (964)
Q Consensus 429 LkV~~A~ 435 (964)
+.|..-+
T Consensus 136 f~v~~f~ 142 (698)
T KOG2314|consen 136 FFVRLFK 142 (698)
T ss_pred EEeehhh
Confidence 7765443
No 176
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.27 E-value=0.071 Score=61.02 Aligned_cols=76 Identities=26% Similarity=0.361 Sum_probs=62.3
Q ss_pred ceEEEeccCCCCcHHHHHHHhhcc--CceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCc-eeCCceEEEEeccCCch
Q 002123 363 GTLVVFNLDSSVSTEELHQIFGIY--GEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRS-DVAGKQIKLEASRPGGA 439 (964)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~f--G~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~-~I~Gr~LkV~~A~~k~~ 439 (964)
..||++||.+.++..+|..+|... +--..+. -..||+||.+.+...|.+|++.++|+ .+.|+++.|....++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl---~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee---eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 368999999999999999999864 1111111 14789999999999999999999998 58999999999988776
Q ss_pred hh
Q 002123 440 RR 441 (964)
Q Consensus 440 r~ 441 (964)
|.
T Consensus 79 rs 80 (584)
T KOG2193|consen 79 RS 80 (584)
T ss_pred Hh
Confidence 54
No 177
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.73 E-value=0.086 Score=62.65 Aligned_cols=79 Identities=22% Similarity=0.329 Sum_probs=66.0
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhc-cCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccc---ccccee
Q 002123 271 PYGEHPSRTLFVRNINSNVEDSELKALFE-QFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR---RRKLDI 346 (964)
Q Consensus 271 ~~~e~~srtLFVgNLP~~vTEedLrelFs-~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~---Gr~L~V 346 (964)
+.....+..|+|.||-.-+|.-+|++++. .+|.|.+.+| -+-|..|||.|.+.++|...+.+|+|..+. ++.|.+
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 34566789999999999999999999999 6677777766 677889999999999999999999997643 466777
Q ss_pred eecC
Q 002123 347 HYSI 350 (964)
Q Consensus 347 ~~A~ 350 (964)
.|..
T Consensus 517 df~~ 520 (718)
T KOG2416|consen 517 DFVR 520 (718)
T ss_pred eecc
Confidence 7664
No 178
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.23 E-value=0.49 Score=47.62 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=57.2
Q ss_pred cCCcceEEEeccCCCC----cHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 359 DANQGTLVVFNLDSSV----STEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~v----TeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
+.+-.||.|+=|..++ +-..+....+.||.|.+|...+ +.-|.|.|.|..+|.+|+.+... ..-|..+++.|.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 3455688886554443 3444555667899999998765 67899999999999999998876 667888999886
Q ss_pred cC
Q 002123 435 RP 436 (964)
Q Consensus 435 ~~ 436 (964)
++
T Consensus 160 qr 161 (166)
T PF15023_consen 160 QR 161 (166)
T ss_pred cc
Confidence 64
No 179
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.05 E-value=0.13 Score=61.17 Aligned_cols=78 Identities=15% Similarity=0.251 Sum_probs=66.3
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhc-cCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCcee---CCceEEEEecc
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGI-YGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDV---AGKQIKLEASR 435 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~-fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I---~Gr~LkV~~A~ 435 (964)
...+.|+|.||--..|.-+|+.+..+ .|.|++. .|-+-|..|||.|.+.++|.+...+|||... +++.|.+.|..
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH-HHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 34678999999999999999999995 6667666 4445688999999999999999999999875 67999999987
Q ss_pred CCc
Q 002123 436 PGG 438 (964)
Q Consensus 436 ~k~ 438 (964)
..+
T Consensus 521 ~de 523 (718)
T KOG2416|consen 521 ADE 523 (718)
T ss_pred hhH
Confidence 654
No 180
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=91.61 E-value=0.4 Score=48.51 Aligned_cols=74 Identities=23% Similarity=0.337 Sum_probs=52.8
Q ss_pred CCCCcEEEEecCCC-----CCCHH----HHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccc
Q 002123 274 EHPSRTLFVRNINS-----NVEDS----ELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKL 344 (964)
Q Consensus 274 e~~srtLFVgNLP~-----~vTEe----dLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L 344 (964)
..+..||.|.=+.+ ...++ +|.+.|..||++.-+|.. .+--+|+|.+-++|-+|+. ++|..+.|+.|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv---~~~mwVTF~dg~sALaals-~dg~~v~g~~l 99 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV---GDTMWVTFRDGQSALAALS-LDGIQVNGRTL 99 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE---TTCEEEEESSCHHHHHHHH-GCCSEETTEEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe---CCeEEEEECccHHHHHHHc-cCCcEECCEEE
Confidence 34567777776651 22333 677889999998888763 3578999999999999997 99999999999
Q ss_pred eeeecCC
Q 002123 345 DIHYSIP 351 (964)
Q Consensus 345 ~V~~A~~ 351 (964)
.|....|
T Consensus 100 ~i~LKtp 106 (146)
T PF08952_consen 100 KIRLKTP 106 (146)
T ss_dssp EEEE---
T ss_pred EEEeCCc
Confidence 9987654
No 181
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=89.90 E-value=0.95 Score=45.65 Aligned_cols=76 Identities=24% Similarity=0.360 Sum_probs=59.0
Q ss_pred CCCCCCcEEEEecCCCCCC-HHHHH---HhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 272 YGEHPSRTLFVRNINSNVE-DSELK---ALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vT-EedLr---elFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
..+.+-.+|.|+=|..++. .+||+ ...+.||+|.+|..-| |--|.|.|.|..+|-+|+.+++. ...|..+++.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 4567788999987776663 34444 5667999999998744 45699999999999999998876 5677888887
Q ss_pred ecC
Q 002123 348 YSI 350 (964)
Q Consensus 348 ~A~ 350 (964)
|..
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 764
No 182
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=89.64 E-value=0.57 Score=55.63 Aligned_cols=76 Identities=21% Similarity=0.234 Sum_probs=58.8
Q ss_pred CCCCCCCCCcEEEEecCCCCCCHHHHHHhhc--cCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccC--Cccccccc
Q 002123 269 EHPYGEHPSRTLFVRNINSNVEDSELKALFE--QFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN--KPLRRRKL 344 (964)
Q Consensus 269 e~~~~e~~srtLFVgNLP~~vTEedLrelFs--~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng--~~i~Gr~L 344 (964)
++.......|.|.++.||..+-+|+++.||. .|-++.+|... ..---||+|++..+|+.|.+.|.. ++|.|++|
T Consensus 167 ekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa--~N~nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 167 EKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFA--HNDNWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred cccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee--ecCceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 3334455668889999999999999999997 57788888762 222368999999999999998765 45777766
Q ss_pred ee
Q 002123 345 DI 346 (964)
Q Consensus 345 ~V 346 (964)
..
T Consensus 245 mA 246 (684)
T KOG2591|consen 245 MA 246 (684)
T ss_pred hh
Confidence 54
No 183
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=89.44 E-value=0.56 Score=51.93 Aligned_cols=60 Identities=13% Similarity=0.267 Sum_probs=49.2
Q ss_pred HHHHHHhhccCCcEEEEEe---cCC---ccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC
Q 002123 291 DSELKALFEQFGDIRTIYT---ACK---HRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 291 EedLrelFs~fG~I~svki---tgk---sRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
++++++..++||+|..|.+ .+. ..--.||+|...++|.+|+-.|||..|.||.+...|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4678889999999998865 111 12257999999999999999999999999998887764
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.10 E-value=1.2 Score=41.13 Aligned_cols=55 Identities=16% Similarity=0.326 Sum_probs=43.6
Q ss_pred cEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccC
Q 002123 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN 336 (964)
Q Consensus 278 rtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng 336 (964)
...+|. +|..+...||.++|+.||.|.--.+ .-.-|||...+.+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhcc
Confidence 455566 9999999999999999999987777 556799999999999999987753
No 185
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=88.89 E-value=0.23 Score=55.90 Aligned_cols=95 Identities=15% Similarity=0.249 Sum_probs=71.2
Q ss_pred CcceEEEeccCCCCcHHHHH---HHhhccCceEEEEecCCC------Cc--eEEEeeCCHHHHHHHHHHhCCceeCCceE
Q 002123 361 NQGTLVVFNLDSSVSTEELH---QIFGIYGEIREIRDTQHK------HN--HKFIEFYDIRAAETALRTLNRSDVAGKQI 429 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLr---elFs~fG~I~sIri~~~s------kG--faFVeF~d~esA~kAL~~LNG~~I~Gr~L 429 (964)
...-+||-.|+..+.++++. +.|.+||.|..|.+.++. .+ -++|+|...++|..||...+|..++|+.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 34567888888877666654 478999999999876532 11 28999999999999999999999999999
Q ss_pred EEEeccCCchhhhcchhhhhcccCccc
Q 002123 430 KLEASRPGGARRFMVQSEQEQDDLNLC 456 (964)
Q Consensus 430 kV~~A~~k~~r~~~qq~eq~q~E~nL~ 456 (964)
+..+...+.... ..+.+..+..+.+|
T Consensus 156 ka~~gttkycs~-~l~~~~c~~~~cmy 181 (327)
T KOG2068|consen 156 KASLGTTKYCSF-YLRNDICQNPDCMY 181 (327)
T ss_pred HHhhCCCcchhH-HhhhhcccCccccc
Confidence 999988877544 12234444444455
No 186
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=88.50 E-value=0.77 Score=56.93 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=65.6
Q ss_pred ceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCcee--CCceEEEEeccCCc
Q 002123 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDV--AGKQIKLEASRPGG 438 (964)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I--~Gr~LkV~~A~~k~ 438 (964)
.+.++.|.+...+-.-|..+|.+||.|.+++..++ -..|.|+|...+.|..|+++|+|+++ -|-+.+|.+|+.-.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccc-ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 45677888889999999999999999999987654 55799999999999999999999985 68899999998644
No 187
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.45 E-value=1.6 Score=48.71 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=58.6
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCc-eEEEEeccCC
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGK-QIKLEASRPG 437 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr-~LkV~~A~~k 437 (964)
.....|-|.++++.-. .-|..+|++||+|.+.... ....+-+|.|.++-+|.+||. -||+.|+|. .|-|..+..|
T Consensus 195 ~~D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 195 AADTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred cccceEEEeccCccch-hHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 3467888999988654 4567899999999886544 556799999999999999999 799999875 4556655543
No 188
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=88.37 E-value=0.61 Score=52.60 Aligned_cols=75 Identities=11% Similarity=0.069 Sum_probs=61.4
Q ss_pred cceEEEeccCCCCcHHHHHHHhhccCc--eEEEEec-----CCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 362 QGTLVVFNLDSSVSTEELHQIFGIYGE--IREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~--I~sIri~-----~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
..++||+||-+.+|++||.+....-|. |.++++. +.+||||+|-..+..+..+.++.|-.++|.|..-.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 358999999999999999998887663 4555543 458999999999999999999999999999976666554
Q ss_pred cC
Q 002123 435 RP 436 (964)
Q Consensus 435 ~~ 436 (964)
..
T Consensus 160 NK 161 (498)
T KOG4849|consen 160 NK 161 (498)
T ss_pred ch
Confidence 43
No 189
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=88.13 E-value=0.28 Score=55.33 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=62.0
Q ss_pred CcEEEEecCCCCCCHHHHH---HhhccCCcEEEEEecCCc--------cceEEEEeCCHHHHHHHHHHccCCccccccce
Q 002123 277 SRTLFVRNINSNVEDSELK---ALFEQFGDIRTIYTACKH--------RGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (964)
Q Consensus 277 srtLFVgNLP~~vTEedLr---elFs~fG~I~svkitgks--------RGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~ 345 (964)
..-+||-+|+..+.++.+. +.|.+||.|..|.+.+.. -.-+||+|...++|..||...+|..+.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3568888999887766655 589999999999763211 12489999999999999999999999999988
Q ss_pred eeecCCCC
Q 002123 346 IHYSIPKD 353 (964)
Q Consensus 346 V~~A~~k~ 353 (964)
..+..++-
T Consensus 157 a~~gttky 164 (327)
T KOG2068|consen 157 ASLGTTKY 164 (327)
T ss_pred HhhCCCcc
Confidence 88877653
No 190
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=87.97 E-value=1 Score=53.71 Aligned_cols=99 Identities=12% Similarity=0.199 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHccCCccccccceeeecCCCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhc--cCceEEEEecCCCCc
Q 002123 323 DIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGI--YGEIREIRDTQHKHN 400 (964)
Q Consensus 323 d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~--fG~I~sIri~~~skG 400 (964)
|.+-..++++..-+..++.+-.+|.- ..+.+.+.++-|+..+-.|+++.+|.- +-.+.+|...-+ .
T Consensus 146 DvdLI~Evlresp~VqvDekgekVrp----------~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--~ 213 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVRP----------NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--D 213 (684)
T ss_pred chHHHHHHHhcCCCceeccCcccccc----------CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--C
Confidence 44445666666666665554444432 234567889999999999999999985 667777765322 2
Q ss_pred eEEEeeCCHHHHHHHHHHhCCc--eeCCceEEEEe
Q 002123 401 HKFIEFYDIRAAETALRTLNRS--DVAGKQIKLEA 433 (964)
Q Consensus 401 faFVeF~d~esA~kAL~~LNG~--~I~Gr~LkV~~ 433 (964)
-=||+|++..||+.|.+.|... +|-||+|....
T Consensus 214 nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 214 NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 3599999999999999988643 57787776543
No 191
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=87.35 E-value=0.8 Score=47.80 Aligned_cols=67 Identities=7% Similarity=0.068 Sum_probs=46.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcc-CCcE---EEEE--ec-----CCccceEEEEeCCHHHHHHHHHHccCCcccc
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQ-FGDI---RTIY--TA-----CKHRGFVMISYYDIRAARNAMKALQNKPLRR 341 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~-fG~I---~svk--it-----gksRGfaFV~F~d~esA~kAl~~Lng~~i~G 341 (964)
....+|.|++||+++||+++.+.+.. +++- ..+. .. ...-.-|||.|.+.+++......++|+.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 44579999999999999999998887 7766 3332 11 1123469999999999999999999987754
No 192
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=85.84 E-value=3.1 Score=38.53 Aligned_cols=56 Identities=16% Similarity=0.286 Sum_probs=42.0
Q ss_pred cceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCC
Q 002123 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR 421 (964)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG 421 (964)
....+|. .|..+-..||.++|++||.|.---|. ..-|||...+.+.|..|+..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~---dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN---DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEEC---TTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc---CCcEEEEeecHHHHHHHHHHhcc
Confidence 3456666 99999999999999999998543332 45799999999999999998753
No 193
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=85.41 E-value=3 Score=36.53 Aligned_cols=54 Identities=20% Similarity=0.439 Sum_probs=41.8
Q ss_pred CcEEEEecCCCCCCHHHHHHhhccC----CcEEEEEecCCccceEEEEeCCHHHHHHHHHHc
Q 002123 277 SRTLFVRNINSNVEDSELKALFEQF----GDIRTIYTACKHRGFVMISYYDIRAARNAMKAL 334 (964)
Q Consensus 277 srtLFVgNLP~~vTEedLrelFs~f----G~I~svkitgksRGfaFV~F~d~esA~kAl~~L 334 (964)
..+|+|+++. +++.++|+.+|..| ++..-=.+ .---|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWI---dDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWI---DDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEe---cCCcEEEEECCHHHHHHHHHcC
Confidence 4689999996 59999999999999 54432233 2235778999999999999764
No 194
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=85.15 E-value=0.97 Score=47.17 Aligned_cols=75 Identities=11% Similarity=0.107 Sum_probs=49.2
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhc-cCce---EEEE--ecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeC---C
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGI-YGEI---REIR--DTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVA---G 426 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~-fG~I---~sIr--i~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~---G 426 (964)
...+|.|++||+.+|++++++.+.+ ++.. .++. .... .-.-|||.|.+.+++..-...++|..+- |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3458999999999999999998887 6665 3333 1111 1124999999999999999999998762 2
Q ss_pred --ceEEEEecc
Q 002123 427 --KQIKLEASR 435 (964)
Q Consensus 427 --r~LkV~~A~ 435 (964)
.+-.|++|-
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 344555554
No 195
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=84.21 E-value=1.9 Score=45.43 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=46.1
Q ss_pred cHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhC--CceeCCceEEEEeccCCc
Q 002123 375 STEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLN--RSDVAGKQIKLEASRPGG 438 (964)
Q Consensus 375 TeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LN--G~~I~Gr~LkV~~A~~k~ 438 (964)
..+.|+++|..|+.+......+. =+-..|.|.+.++|.+|...|+ +..+.|..++|.+++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 35789999999999888776644 3347899999999999999999 999999999999996543
No 196
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=83.75 E-value=0.66 Score=54.30 Aligned_cols=74 Identities=20% Similarity=0.238 Sum_probs=59.8
Q ss_pred ceEEEeccCCCC-cHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCc
Q 002123 363 GTLVVFNLDSSV-STEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (964)
Q Consensus 363 ~tLfV~NLp~~v-TeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~ 438 (964)
+.|-+.-.+... +-++|...|.+||+|..|.+.-. -..|.|+|.+..+|-+|.. .++..|+++.|+|.|-.+..
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 344444455544 46889999999999999987533 5679999999999988877 78999999999999998855
No 197
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=81.00 E-value=5.7 Score=34.82 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=42.5
Q ss_pred cceEEEeccCCCCcHHHHHHHhhcc---CceEEEEecCCCCceEEEeeCCHHHHHHHHHHh
Q 002123 362 QGTLVVFNLDSSVSTEELHQIFGIY---GEIREIRDTQHKHNHKFIEFYDIRAAETALRTL 419 (964)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~f---G~I~sIri~~~skGfaFVeF~d~esA~kAL~~L 419 (964)
...|+|++++. ++.++|+.+|..| .....|..+.+ .-+=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdD--tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDD--TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecC--CcEEEEECCHHHHHHHHHcC
Confidence 35799999854 8889999999998 12345555544 34789999999999999865
No 198
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=79.43 E-value=3.8 Score=45.86 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=53.7
Q ss_pred CcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCcccccc-ceeeec
Q 002123 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK-LDIHYS 349 (964)
Q Consensus 277 srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~-L~V~~A 349 (964)
..=|-|-++|+. .-.-|..+|++||.|+..... ..-.|-+|.|.+.-+|++||. .+|+.|.|.. |-|+..
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeec
Confidence 345666788875 445677889999999988774 566699999999999999997 7888887743 444443
No 199
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=78.16 E-value=2.4 Score=44.63 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=45.2
Q ss_pred CHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHcc--CCccccccceeeecCCC
Q 002123 290 EDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQ--NKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 290 TEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Ln--g~~i~Gr~L~V~~A~~k 352 (964)
..+.|+++|..|+.+..+.. -++-+-..|.|.+.++|.+|...|+ +..+.|..++|-|++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~-L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSP-LKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEE-ETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEE-cCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 35789999999999888765 3444567899999999999999999 89999999999998543
No 200
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=77.86 E-value=2.1 Score=52.13 Aligned_cols=72 Identities=19% Similarity=0.183 Sum_probs=63.9
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
......++||+|+...+.++-++.+...+|.|.+++... |||..|..+..+..|+..++-..++|..+.+..
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 334567999999999999999999999999999987654 999999999999999999999999988877765
No 201
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=76.63 E-value=17 Score=35.31 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=46.6
Q ss_pred eEEEeccCCCCcHHHHHHHhhcc-CceEEEEecCCCCc---eEEEeeCCHHHHHHHHHHhCCceeC
Q 002123 364 TLVVFNLDSSVSTEELHQIFGIY-GEIREIRDTQHKHN---HKFIEFYDIRAAETALRTLNRSDVA 425 (964)
Q Consensus 364 tLfV~NLp~~vTeedLrelFs~f-G~I~sIri~~~skG---faFVeF~d~esA~kAL~~LNG~~I~ 425 (964)
.+.+-..|.-++.++|..+.+.+ ..|..+++.++... .+.++|.+.++|.+-.+..||+.+.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 44444555556667777666666 45677888876443 5899999999999999999999874
No 202
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=75.91 E-value=2.8 Score=45.93 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=56.9
Q ss_pred cEEEEecCCCCCCHHHHHHhhccCCcEEEEE----ecCCccceEEEEeCCHHHHHHHHHHccCC----ccccccceee
Q 002123 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIY----TACKHRGFVMISYYDIRAARNAMKALQNK----PLRRRKLDIH 347 (964)
Q Consensus 278 rtLFVgNLP~~vTEedLrelFs~fG~I~svk----itgksRGfaFV~F~d~esA~kAl~~Lng~----~i~Gr~L~V~ 347 (964)
..|||.||..-+..+.|...|+.||+|.... ..++..+-++|.|...-.|.+|++.+.-. +..+++.-|.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 7899999999999999999999999986542 36888889999999999999999976332 3345555553
No 203
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=73.74 E-value=3.4 Score=38.57 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=44.9
Q ss_pred EEEEeCCHHHHHHHHHHccCC--ccccccceeeecCCCCCCC-----CccCCcceEEEeccCCCCcHHHHHHHh
Q 002123 317 VMISYYDIRAARNAMKALQNK--PLRRRKLDIHYSIPKDNPS-----EKDANQGTLVVFNLDSSVSTEELHQIF 383 (964)
Q Consensus 317 aFV~F~d~esA~kAl~~Lng~--~i~Gr~L~V~~A~~k~~~~-----~~~~~~~tLfV~NLp~~vTeedLrelF 383 (964)
|.|+|.+.+-|++.++ +..+ .+.+..+.|....-..... ......++|.|.|||...++|+|++..
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 6899999999999997 3333 3455555554332111111 123467899999999999999998754
No 204
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=72.69 E-value=7 Score=34.87 Aligned_cols=59 Identities=22% Similarity=0.358 Sum_probs=35.4
Q ss_pred CCCcHHHHHHHhhccCc-----eEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 372 SSVSTEELHQIFGIYGE-----IREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 372 ~~vTeedLrelFs~fG~-----I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
..++..+|..++...+. |-.|++. ..|.||+-.. +.|..+++.|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45677788888876543 4556665 4589998754 5899999999999999999999875
No 205
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=72.36 E-value=2 Score=50.52 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=63.4
Q ss_pred CCCCcEEEEecCCCCC-CHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 274 EHPSRTLFVRNINSNV-EDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 274 e~~srtLFVgNLP~~v-TEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
....+.|-+.-+|... |-++|...|.+||+|..|.+.-. --.|.|+|.+..+|-+|.. ..+..|.+|.|+|.|-.+.
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 4455677777777765 56899999999999999988333 5579999999999988875 8899999999999998764
Q ss_pred C
Q 002123 353 D 353 (964)
Q Consensus 353 ~ 353 (964)
.
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 3
No 206
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=71.21 E-value=5.9 Score=39.31 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=73.5
Q ss_pred HHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCCCCCccC--CcceEEEe
Q 002123 291 DSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDA--NQGTLVVF 368 (964)
Q Consensus 291 EedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~~~~~~--~~~tLfV~ 368 (964)
...|..++...|.+.-..+ ..++..+.|.+.++++++++ .....+.+..+.++.-.+.....+... ..--|-|.
T Consensus 35 ~~~l~~~W~~~~~~~i~~l---~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~ 110 (153)
T PF14111_consen 35 EQELAKIWKLKGGVKIRDL---GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIY 110 (153)
T ss_pred HHHHHHHhCCCCcEEEEEe---CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccchhhhhc
Confidence 3455555555666655555 67999999999999999996 444567787777766655444333222 23457788
Q ss_pred ccCCC-CcHHHHHHHhhccCceEEEEecCC
Q 002123 369 NLDSS-VSTEELHQIFGIYGEIREIRDTQH 397 (964)
Q Consensus 369 NLp~~-vTeedLrelFs~fG~I~sIri~~~ 397 (964)
|||.. .+++-|+++-+.+|++.++.....
T Consensus 111 glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 111 GLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred cCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 99977 688889999999999999876543
No 207
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=62.96 E-value=5.3 Score=48.82 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=63.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
...+.-+|||+||...+..+-++.+...||-|.+++... |||..|.....+.+|+..+.-..+.|.++.+..
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 455678999999999999999999999999999886522 999999999999999998888889888877754
No 208
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=62.55 E-value=4.2 Score=50.88 Aligned_cols=74 Identities=19% Similarity=0.319 Sum_probs=61.2
Q ss_pred EEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCcc--ccccceeeecCCCC
Q 002123 279 TLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL--RRRKLDIHYSIPKD 353 (964)
Q Consensus 279 tLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i--~Gr~L~V~~A~~k~ 353 (964)
+.++.|.+-..+-.-|..+|.+||.|.+++. -+.-..|.|+|...+.|..|+++++|+++ -|-+.+|.+|.+-.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wt-lr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWT-LRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhhee-cccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 4556667778889999999999999999876 34455799999999999999999999874 47888888886543
No 209
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=61.30 E-value=51 Score=32.07 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=44.9
Q ss_pred cEEEE-ecCCCCCCHHHHHHhhccCCc-EEEEEe---cCCccceEEEEeCCHHHHHHHHHHccCCcccc
Q 002123 278 RTLFV-RNINSNVEDSELKALFEQFGD-IRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRR 341 (964)
Q Consensus 278 rtLFV-gNLP~~vTEedLrelFs~fG~-I~svki---tgksRGfaFV~F~d~esA~kAl~~Lng~~i~G 341 (964)
.+|.| -..|.-++-++|..+.+.+-+ |..+++ ...+|--+.+.|.+.++|+.-.+.+||+.+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 44444 444555555677666666643 555554 34477789999999999999999999988753
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=61.17 E-value=28 Score=30.87 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=43.0
Q ss_pred CCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEE
Q 002123 373 SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL 431 (964)
Q Consensus 373 ~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV 431 (964)
.++-++++..+..|+-. .|+ .+..| =||-|.+.++|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~I~--~d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-RIR--DDRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-eEE--ecCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46778999999999753 233 24344 489999999999999999999887777654
No 211
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=60.45 E-value=1.2e+02 Score=34.56 Aligned_cols=145 Identities=19% Similarity=0.320 Sum_probs=93.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEec--C----------CccceEEEEeCCHHHHHHHH----HHccC--
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA--C----------KHRGFVMISYYDIRAARNAM----KALQN-- 336 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkit--g----------ksRGfaFV~F~d~esA~kAl----~~Lng-- 336 (964)
-..|.|.+.|+..+++-..+...|.+||+|++|++- . +......+.|-+.+.|-... +.|..
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999999999999999999871 1 23468899999988875433 22332
Q ss_pred CccccccceeeecCCCC------CCCCcc----------------CCcceEEEeccCCCCcHHH-HHHHh---hccC---
Q 002123 337 KPLRRRKLDIHYSIPKD------NPSEKD----------------ANQGTLVVFNLDSSVSTEE-LHQIF---GIYG--- 387 (964)
Q Consensus 337 ~~i~Gr~L~V~~A~~k~------~~~~~~----------------~~~~tLfV~NLp~~vTeed-LrelF---s~fG--- 387 (964)
+.+....|.+.|..-+- +..+.+ ...+.|.|. +...+++++ +.+.+ ..-+
T Consensus 93 ~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~R 171 (309)
T PF10567_consen 93 TKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNKR 171 (309)
T ss_pred HhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCce
Confidence 34667778887764211 110111 123455554 334443333 33322 1123
Q ss_pred -ceEEEEecCC-------CCceEEEeeCCHHHHHHHHHHhC
Q 002123 388 -EIREIRDTQH-------KHNHKFIEFYDIRAAETALRTLN 420 (964)
Q Consensus 388 -~I~sIri~~~-------skGfaFVeF~d~esA~kAL~~LN 420 (964)
.|++|.++.. .+.||.++|-+...|...+..+.
T Consensus 172 YVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 172 YVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 3456666531 57799999999999999998775
No 212
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=57.92 E-value=25 Score=31.20 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=42.0
Q ss_pred CCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 288 NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 288 ~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
.++-++++..+..|+-..-.. ...|| ||.|.+.++|+++.+..+|..+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~I~~---d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDRIRD---DRTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcceEEe---cCCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 477899999999998544321 23444 89999999999999999998877665543
No 213
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=53.31 E-value=31 Score=40.85 Aligned_cols=64 Identities=17% Similarity=0.293 Sum_probs=55.6
Q ss_pred cceEEEeccCCCCcHHHHHHHhhcc-CceEEEEecCCCCc---eEEEeeCCHHHHHHHHHHhCCceeC
Q 002123 362 QGTLVVFNLDSSVSTEELHQIFGIY-GEIREIRDTQHKHN---HKFIEFYDIRAAETALRTLNRSDVA 425 (964)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~f-G~I~sIri~~~skG---faFVeF~d~esA~kAL~~LNG~~I~ 425 (964)
...|+|-.+|..++-.||..++..+ -.|..|+++++.-. ...|+|.+.++|..-.+.+||+.+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 6789999999999999999999986 45788888876332 4899999999999999999999874
No 214
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=45.65 E-value=56 Score=29.12 Aligned_cols=58 Identities=16% Similarity=0.289 Sum_probs=34.1
Q ss_pred CCCHHHHHHhhccCC-----cEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 288 NVEDSELKALFEQFG-----DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 288 ~vTEedLrelFs~fG-----~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
.++..+|..++..-+ +|-.|++ ...|+||+-.. +.|+.+++.|++..+.|+++.|..|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I---~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDI---FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEE---eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 467778888877654 3555565 45588888754 5789999999999999999999764
No 215
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.38 E-value=67 Score=39.31 Aligned_cols=78 Identities=21% Similarity=0.341 Sum_probs=60.3
Q ss_pred CCCCCCcEEEEecCCCC-CCHHHHHHhhccC----CcEEEEEe---------------cCC-------------c-----
Q 002123 272 YGEHPSRTLFVRNINSN-VEDSELKALFEQF----GDIRTIYT---------------ACK-------------H----- 313 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~-vTEedLrelFs~f----G~I~svki---------------tgk-------------s----- 313 (964)
......++|-|-|+.|+ +..++|..+|..| |.|.+|.| .|. +
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 34567899999999996 6789999988855 58988854 222 0
Q ss_pred ----------c---------ceEEEEeCCHHHHHHHHHHccCCcccc--ccceeeec
Q 002123 314 ----------R---------GFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYS 349 (964)
Q Consensus 314 ----------R---------GfaFV~F~d~esA~kAl~~Lng~~i~G--r~L~V~~A 349 (964)
| -||.|+|.+.+.|.+..+.++|..+.. ..|.+.|-
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1 289999999999999999999998874 45555543
No 216
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=38.93 E-value=25 Score=39.01 Aligned_cols=107 Identities=15% Similarity=0.291 Sum_probs=0.0
Q ss_pred EEEe----CCHHHHHHHHHHccCCccc----cccceeeecCCCCCCCCccC------------------CcceEEEeccC
Q 002123 318 MISY----YDIRAARNAMKALQNKPLR----RRKLDIHYSIPKDNPSEKDA------------------NQGTLVVFNLD 371 (964)
Q Consensus 318 FV~F----~d~esA~kAl~~Lng~~i~----Gr~L~V~~A~~k~~~~~~~~------------------~~~tLfV~NLp 371 (964)
||.| .+..-.++.+..|+|..+. ...|+|.-+..+-+-+.... ...||++..||
T Consensus 79 ~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ip 158 (445)
T KOG2891|consen 79 FIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAGIP 158 (445)
T ss_pred eEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhhhhccCCCCCCCceeecCCc
Q ss_pred CCC------------cHHHHHHHhhccCceEEEEec---------------CCCCce---------EEEeeCCHHHHHHH
Q 002123 372 SSV------------STEELHQIFGIYGEIREIRDT---------------QHKHNH---------KFIEFYDIRAAETA 415 (964)
Q Consensus 372 ~~v------------TeedLrelFs~fG~I~sIri~---------------~~skGf---------aFVeF~d~esA~kA 415 (964)
-.| +++.|+..|..||+|..|.|+ -..+|| |||+|-...--..|
T Consensus 159 ~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~a 238 (445)
T KOG2891|consen 159 CKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQA 238 (445)
T ss_pred ceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHH
Q ss_pred HHHhCCcee
Q 002123 416 LRTLNRSDV 424 (964)
Q Consensus 416 L~~LNG~~I 424 (964)
+.+|.|..+
T Consensus 239 mdalr~~k~ 247 (445)
T KOG2891|consen 239 MDALRGMKL 247 (445)
T ss_pred HHHHhcchH
No 217
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=34.59 E-value=48 Score=35.08 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=53.0
Q ss_pred ceEEEeccCCCCc-----HHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCc-eEEEEeccC
Q 002123 363 GTLVVFNLDSSVS-----TEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGK-QIKLEASRP 436 (964)
Q Consensus 363 ~tLfV~NLp~~vT-----eedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr-~LkV~~A~~ 436 (964)
.++.+.+++..+- ......+|.+|-+..-..+. ++.++.-|.|.+++.|..|...+++..+.|+ .++.-++++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 3567777765542 23344566655554433333 2456678899999999999999999999988 888888887
Q ss_pred Cc
Q 002123 437 GG 438 (964)
Q Consensus 437 k~ 438 (964)
.-
T Consensus 90 ~~ 91 (193)
T KOG4019|consen 90 GH 91 (193)
T ss_pred CC
Confidence 54
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.42 E-value=1.2e+02 Score=37.17 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=56.7
Q ss_pred CcceEEEeccCCC-CcHHHHHHHhhcc----CceEEEEecCC----------------------------C---------
Q 002123 361 NQGTLVVFNLDSS-VSTEELHQIFGIY----GEIREIRDTQH----------------------------K--------- 398 (964)
Q Consensus 361 ~~~tLfV~NLp~~-vTeedLrelFs~f----G~I~sIri~~~----------------------------s--------- 398 (964)
..++|-|-|++++ +.-++|..+|..| |.|.+|.|.+- +
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4568999999985 6789999999865 68999987420 0
Q ss_pred ------C---------ceEEEeeCCHHHHHHHHHHhCCceeCC--ceEEEEe
Q 002123 399 ------H---------NHKFIEFYDIRAAETALRTLNRSDVAG--KQIKLEA 433 (964)
Q Consensus 399 ------k---------GfaFVeF~d~esA~kAL~~LNG~~I~G--r~LkV~~ 433 (964)
| -||.|+|.+.+.|.+.....+|..+.. ..|-+.|
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1 169999999999999999999999864 4444444
No 219
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=32.80 E-value=33 Score=36.26 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=53.4
Q ss_pred CcEEEEecCCCCCCH-----HHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccc-cceeeecC
Q 002123 277 SRTLFVRNINSNVED-----SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRR-KLDIHYSI 350 (964)
Q Consensus 277 srtLFVgNLP~~vTE-----edLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr-~L~V~~A~ 350 (964)
.+++++.+|..++-. .....+|.+|-+.....+ -++.++.-|.|.+++.|..|...++...+.|+ .+..-+++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~-lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQL-LRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHH-HHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 356777777766532 233456666655544433 45667788999999999999999999999998 77777776
Q ss_pred CC
Q 002123 351 PK 352 (964)
Q Consensus 351 ~k 352 (964)
+-
T Consensus 89 ~~ 90 (193)
T KOG4019|consen 89 PG 90 (193)
T ss_pred CC
Confidence 53
No 220
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=31.20 E-value=1e+02 Score=28.73 Aligned_cols=55 Identities=7% Similarity=0.209 Sum_probs=42.1
Q ss_pred eEEEeccCCCCcHHHHHHHhhc-cCc-eEEEEecCCCCc--eEEEeeCCHHHHHHHHHH
Q 002123 364 TLVVFNLDSSVSTEELHQIFGI-YGE-IREIRDTQHKHN--HKFIEFYDIRAAETALRT 418 (964)
Q Consensus 364 tLfV~NLp~~vTeedLrelFs~-fG~-I~sIri~~~skG--faFVeF~d~esA~kAL~~ 418 (964)
+-|+...+...+..+|++.++. ||. |.+|.......+ -|||++.....|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 5677888899999999999998 663 677765433344 599999998888877553
No 221
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.35 E-value=1.2e+02 Score=35.59 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=45.8
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCce-EEEEecCCCCceEEEeeCCHHHHHHHHH
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEI-REIRDTQHKHNHKFIEFYDIRAAETALR 417 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I-~sIri~~~skGfaFVeF~d~esA~kAL~ 417 (964)
-...|-|.++|...-.+||...|+.|+.- -.|+.+. ...+|--|.+...|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD--dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD--DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEee--cceeEEeecchHHHHHHhh
Confidence 45689999999999999999999999753 4455553 4579999999999999998
No 222
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=28.58 E-value=1.8e+02 Score=34.80 Aligned_cols=64 Identities=19% Similarity=0.269 Sum_probs=52.6
Q ss_pred CcEEEEecCCCCCCHHHHHHhhccCC-cEEEE---EecCCccceEEEEeCCHHHHHHHHHHccCCccc
Q 002123 277 SRTLFVRNINSNVEDSELKALFEQFG-DIRTI---YTACKHRGFVMISYYDIRAARNAMKALQNKPLR 340 (964)
Q Consensus 277 srtLFVgNLP~~vTEedLrelFs~fG-~I~sv---kitgksRGfaFV~F~d~esA~kAl~~Lng~~i~ 340 (964)
++.|+|=-+|..+|-.||..+...+= .|..+ +..-.++-.+.|.|.+.++|....+.+||+.|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 89999999999999999998887553 34444 434456778999999999999999999998764
No 223
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=27.30 E-value=1.4e+02 Score=27.41 Aligned_cols=54 Identities=9% Similarity=0.254 Sum_probs=40.7
Q ss_pred eEEEeccCCCCcHHHHHHHhhc-cC-ceEEEEecCCCCc--eEEEeeCCHHHHHHHHH
Q 002123 364 TLVVFNLDSSVSTEELHQIFGI-YG-EIREIRDTQHKHN--HKFIEFYDIRAAETALR 417 (964)
Q Consensus 364 tLfV~NLp~~vTeedLrelFs~-fG-~I~sIri~~~skG--faFVeF~d~esA~kAL~ 417 (964)
+-|+..++...+..+|++.++. || .|.+|.......+ -|||++..-+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 5788889999999999999987 65 3666655433334 49999988888776654
Done!