Query 002123
Match_columns 964
No_of_seqs 623 out of 3423
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 13:18:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002123.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002123hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1.4E-33 4.8E-38 303.0 17.8 235 149-441 23-268 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 2.2E-32 7.4E-37 294.8 17.1 237 147-438 40-292 (292)
3 4f02_A Polyadenylate-binding p 100.0 9.7E-31 3.3E-35 271.3 16.7 166 274-441 12-185 (213)
4 3md3_A Nuclear and cytoplasmic 100.0 2.6E-29 8.8E-34 245.9 18.7 157 278-436 1-166 (166)
5 3smz_A Protein raver-1, ribonu 100.0 7E-29 2.4E-33 266.4 22.0 195 275-487 20-228 (284)
6 1b7f_A Protein (SXL-lethal pro 100.0 1.1E-28 3.6E-33 242.9 19.0 155 276-434 2-168 (168)
7 1fxl_A Paraneoplastic encephal 100.0 1.4E-28 4.9E-33 240.9 19.1 155 276-434 1-167 (167)
8 1l3k_A Heterogeneous nuclear r 100.0 9.8E-29 3.4E-33 249.4 18.1 168 272-441 8-187 (196)
9 2qfj_A FBP-interacting repress 100.0 1.4E-28 5E-33 251.9 18.2 166 275-440 26-208 (216)
10 3pgw_A U1-A; protein-RNA compl 100.0 3.1E-28 1.1E-32 261.1 21.5 164 273-436 5-282 (282)
11 2ghp_A U4/U6 snRNA-associated 100.0 2.4E-28 8.3E-33 263.2 19.4 203 271-487 35-256 (292)
12 2adc_A Polypyrimidine tract-bi 100.0 6.3E-28 2.2E-32 252.9 21.6 165 273-437 30-228 (229)
13 1fje_B Nucleolin RBD12, protei 100.0 1.1E-28 3.8E-33 245.4 13.9 162 273-437 9-174 (175)
14 2cjk_A Nuclear polyadenylated 100.0 1.6E-28 5.4E-33 241.8 13.9 156 276-438 2-167 (167)
15 2g4b_A Splicing factor U2AF 65 100.0 4.9E-28 1.7E-32 239.4 16.8 154 276-435 3-172 (172)
16 1qm9_A Polypyrimidine tract-bi 100.0 5E-28 1.7E-32 246.1 17.1 162 276-437 2-197 (198)
17 3tyt_A Heterogeneous nuclear r 100.0 1.2E-27 4.1E-32 248.5 19.4 159 276-434 3-204 (205)
18 3nmr_A Cugbp ELAV-like family 100.0 9.4E-28 3.2E-32 237.2 17.5 157 276-435 2-175 (175)
19 2yh0_A Splicing factor U2AF 65 100.0 7.4E-28 2.5E-32 243.4 16.9 162 276-439 3-196 (198)
20 3sde_A Paraspeckle component 1 99.9 6.5E-26 2.2E-30 242.3 17.2 156 273-439 18-181 (261)
21 4f02_A Polyadenylate-binding p 99.8 2.2E-21 7.4E-26 201.1 4.2 164 147-354 14-183 (213)
22 2yh0_A Splicing factor U2AF 65 99.8 2.4E-20 8.3E-25 188.3 10.0 178 149-354 5-196 (198)
23 1fje_B Nucleolin RBD12, protei 99.8 1.4E-20 4.7E-25 187.0 7.9 160 148-352 13-174 (175)
24 2i2y_A Fusion protein consists 99.8 7.5E-20 2.6E-24 179.6 12.8 127 311-438 10-149 (150)
25 3md3_A Nuclear and cytoplasmic 99.8 3.2E-20 1.1E-24 181.2 8.8 158 150-350 2-165 (166)
26 1l3k_A Heterogeneous nuclear r 99.8 2.3E-20 7.7E-25 188.2 7.4 167 148-356 13-187 (196)
27 1b7f_A Protein (SXL-lethal pro 99.8 6.5E-20 2.2E-24 180.1 9.7 156 148-349 3-168 (168)
28 2qfj_A FBP-interacting repress 99.8 2.2E-20 7.4E-25 191.2 4.8 174 149-355 29-208 (216)
29 2g4b_A Splicing factor U2AF 65 99.8 6.9E-20 2.4E-24 180.9 7.7 155 149-350 5-172 (172)
30 2kn4_A Immunoglobulin G-bindin 99.8 1.1E-18 3.7E-23 172.2 15.4 131 310-440 9-153 (158)
31 2cjk_A Nuclear polyadenylated 99.8 3.3E-20 1.1E-24 182.3 4.3 155 149-352 4-166 (167)
32 1fxl_A Paraneoplastic encephal 99.8 1.3E-19 4.3E-24 177.2 7.6 155 149-349 3-167 (167)
33 3nmr_A Cugbp ELAV-like family 99.8 1E-19 3.4E-24 179.6 6.0 161 148-350 3-175 (175)
34 4f25_A Polyadenylate-binding p 99.8 4.6E-19 1.6E-23 167.2 9.7 103 276-378 4-113 (115)
35 3pgw_A U1-A; protein-RNA compl 99.7 1.8E-18 6.1E-23 185.3 10.2 77 274-350 204-281 (282)
36 3tyt_A Heterogeneous nuclear r 99.7 1.4E-18 4.9E-23 180.3 9.0 172 149-349 5-204 (205)
37 2adc_A Polypyrimidine tract-bi 99.7 1.7E-17 5.9E-22 173.6 12.9 178 146-352 32-228 (229)
38 4f25_A Polyadenylate-binding p 99.7 1.4E-17 4.9E-22 157.0 9.4 105 362-467 5-113 (115)
39 1qm9_A Polypyrimidine tract-bi 99.7 2.5E-17 8.4E-22 167.2 11.9 175 149-352 4-197 (198)
40 3sde_A Paraspeckle component 1 99.7 2.3E-17 7.7E-22 176.2 10.7 153 146-354 20-181 (261)
41 2kn4_A Immunoglobulin G-bindin 99.7 2.2E-16 7.6E-21 155.7 13.5 83 273-355 66-153 (158)
42 3lqv_A PRE-mRNA branch site pr 99.7 1E-16 3.4E-21 150.2 7.7 103 274-388 5-109 (115)
43 4fxv_A ELAV-like protein 1; RN 99.7 2E-16 7E-21 145.7 9.5 77 275-351 17-98 (99)
44 2i2y_A Fusion protein consists 99.7 2.5E-16 8.6E-21 154.5 10.3 138 207-353 11-149 (150)
45 4fxv_A ELAV-like protein 1; RN 99.6 8.6E-16 2.9E-20 141.5 9.6 76 361-436 18-98 (99)
46 2lea_A Serine/arginine-rich sp 99.6 5.9E-16 2E-20 150.4 8.1 121 315-440 5-130 (135)
47 2hvz_A Splicing factor, argini 99.6 8.4E-16 2.9E-20 140.6 7.8 94 278-371 1-100 (101)
48 2lxi_A RNA-binding protein 10; 99.6 4.6E-16 1.6E-20 141.0 5.8 79 277-355 1-86 (91)
49 3s8s_A Histone-lysine N-methyl 99.6 2E-15 6.7E-20 142.0 10.2 79 274-352 3-86 (110)
50 2do4_A Squamous cell carcinoma 99.6 5.1E-15 1.7E-19 135.1 11.8 83 272-354 12-98 (100)
51 1whw_A Hypothetical protein ri 99.6 4.9E-15 1.7E-19 134.8 11.6 82 274-355 5-91 (99)
52 2d9p_A Polyadenylate-binding p 99.6 7.9E-15 2.7E-19 134.6 12.8 85 272-356 10-97 (103)
53 1x5u_A Splicing factor 3B subu 99.6 7.4E-15 2.5E-19 135.1 12.5 84 272-355 10-98 (105)
54 2dnh_A Bruno-like 5, RNA bindi 99.6 8.3E-15 2.8E-19 134.7 12.7 83 273-355 11-100 (105)
55 2dgs_A DAZ-associated protein 99.6 9.9E-15 3.4E-19 133.0 13.0 83 273-356 6-93 (99)
56 2dnz_A Probable RNA-binding pr 99.6 6.8E-15 2.3E-19 132.7 11.8 81 275-355 3-88 (95)
57 3md1_A Nuclear and cytoplasmic 99.6 4.6E-15 1.6E-19 130.3 9.9 77 277-353 1-82 (83)
58 2cq0_A Eukaryotic translation 99.6 7.2E-15 2.4E-19 134.9 11.5 84 272-355 10-98 (103)
59 2dnm_A SRP46 splicing factor; 99.6 6.5E-15 2.2E-19 135.1 11.1 84 272-355 8-96 (103)
60 1x4a_A Splicing factor, argini 99.6 1E-14 3.5E-19 135.3 12.6 84 272-355 17-102 (109)
61 2dgv_A HnRNP M, heterogeneous 99.6 7.5E-15 2.6E-19 131.7 11.1 83 273-355 4-89 (92)
62 3bs9_A Nucleolysin TIA-1 isofo 99.6 3.9E-15 1.3E-19 132.0 9.1 78 275-352 4-86 (87)
63 2dgo_A Cytotoxic granule-assoc 99.6 1E-14 3.6E-19 136.4 12.5 85 272-356 10-99 (115)
64 1rk8_A CG8781-PA, CG8781-PA pr 99.6 3.6E-15 1.2E-19 149.0 9.9 123 319-441 11-156 (165)
65 1sjq_A Polypyrimidine tract-bi 99.6 4.3E-15 1.5E-19 139.3 9.6 83 273-356 12-96 (105)
66 2cph_A RNA binding motif prote 99.6 1.2E-14 4E-19 133.9 12.5 84 272-355 10-100 (107)
67 3r27_A HnRNP L, heterogeneous 99.6 4.7E-15 1.6E-19 137.9 9.7 80 273-353 17-98 (100)
68 3s8s_A Histone-lysine N-methyl 99.6 5.9E-15 2E-19 138.7 10.2 81 361-441 5-90 (110)
69 2x1f_A MRNA 3'-END-processing 99.6 5.9E-15 2E-19 133.9 9.9 79 276-354 1-84 (96)
70 1x4h_A RNA-binding protein 28; 99.6 1.1E-14 3.8E-19 135.0 11.9 85 272-356 10-105 (111)
71 2cq3_A RNA-binding protein 9; 99.6 1.7E-14 5.9E-19 132.3 12.9 85 272-356 10-97 (103)
72 2cpz_A CUG triplet repeat RNA- 99.6 7.5E-15 2.6E-19 137.5 10.7 84 272-355 20-108 (115)
73 1p27_B RNA-binding protein 8A; 99.6 7.1E-15 2.4E-19 135.4 10.1 81 273-353 19-104 (106)
74 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.4E-14 4.6E-19 133.0 11.7 84 272-355 10-96 (103)
75 2ad9_A Polypyrimidine tract-bi 99.6 9.2E-15 3.1E-19 140.0 10.9 87 269-356 23-111 (119)
76 2jrs_A RNA-binding protein 39; 99.6 1.1E-14 3.7E-19 136.0 11.0 82 272-353 21-107 (108)
77 3mdf_A Peptidyl-prolyl CIS-tra 99.6 8.5E-15 2.9E-19 129.2 9.6 77 274-350 4-85 (85)
78 1wex_A Hypothetical protein (r 99.6 1.4E-14 4.9E-19 135.1 11.6 82 272-354 10-93 (104)
79 1sjq_A Polypyrimidine tract-bi 99.6 5.2E-15 1.8E-19 138.7 8.6 80 360-440 14-95 (105)
80 2cpf_A RNA binding motif prote 99.6 1E-14 3.5E-19 132.5 10.2 81 275-355 3-91 (98)
81 1x5t_A Splicing factor 3B subu 99.6 6.2E-15 2.1E-19 133.2 8.5 82 275-356 3-90 (96)
82 1x5s_A Cold-inducible RNA-bind 99.6 1.1E-14 3.8E-19 133.2 10.3 83 273-355 8-95 (102)
83 2hvz_A Splicing factor, argini 99.6 5.5E-15 1.9E-19 135.2 8.2 78 363-440 1-78 (101)
84 1x4d_A Matrin 3; structural ge 99.6 1.3E-14 4.4E-19 135.2 10.7 80 274-354 12-94 (102)
85 2lxi_A RNA-binding protein 10; 99.6 3.3E-15 1.1E-19 135.3 6.6 77 363-439 2-85 (91)
86 2cqb_A Peptidyl-prolyl CIS-tra 99.6 8.3E-15 2.8E-19 134.0 9.2 83 273-355 8-95 (102)
87 2e5h_A Zinc finger CCHC-type a 99.6 1.5E-14 5.1E-19 130.2 10.7 78 273-350 12-94 (94)
88 2cqi_A Nucleolysin TIAR; RNA r 99.5 2.5E-14 8.6E-19 131.2 12.3 83 358-440 11-96 (103)
89 1why_A Hypothetical protein ri 99.5 2.7E-14 9.2E-19 129.8 12.4 81 273-354 13-95 (97)
90 2dgp_A Bruno-like 4, RNA bindi 99.5 1.3E-14 4.3E-19 133.7 10.3 84 272-355 8-99 (106)
91 2dhg_A TRNA selenocysteine ass 99.5 1.6E-14 5.6E-19 132.5 11.0 83 273-355 5-93 (104)
92 2wbr_A GW182, gawky, LD47780P; 99.5 7.5E-15 2.6E-19 133.3 8.5 73 362-435 7-79 (89)
93 3r27_A HnRNP L, heterogeneous 99.5 1.4E-14 4.7E-19 134.7 10.3 78 360-438 19-98 (100)
94 2cq1_A PTB-like protein L; RRM 99.5 2.4E-14 8.3E-19 132.9 12.0 83 272-355 10-94 (101)
95 2cqc_A Arginine/serine-rich sp 99.5 1.2E-14 4.2E-19 130.8 9.6 79 273-351 11-94 (95)
96 3p5t_L Cleavage and polyadenyl 99.5 3.7E-15 1.3E-19 134.0 6.0 77 278-354 2-85 (90)
97 1wi8_A EIF-4B, eukaryotic tran 99.5 2.4E-14 8.1E-19 131.8 11.6 82 272-355 10-97 (104)
98 1whw_A Hypothetical protein ri 99.5 2.6E-14 9E-19 130.0 11.7 81 360-440 6-91 (99)
99 2dnq_A RNA-binding protein 4B; 99.5 2.5E-14 8.7E-19 128.2 11.2 79 274-355 5-83 (90)
100 2lkz_A RNA-binding protein 5; 99.5 5.5E-15 1.9E-19 135.7 7.0 79 273-351 5-94 (95)
101 2lea_A Serine/arginine-rich sp 99.5 7.3E-15 2.5E-19 142.7 8.2 84 272-355 42-130 (135)
102 2cph_A RNA binding motif prote 99.5 2.9E-14 9.8E-19 131.3 11.8 83 358-440 11-100 (107)
103 2kxn_B Transformer-2 protein h 99.5 1.7E-14 5.9E-19 139.1 10.7 82 272-353 41-127 (129)
104 1x4a_A Splicing factor, argini 99.5 3.5E-14 1.2E-18 131.7 12.3 82 358-439 18-101 (109)
105 1oo0_B CG8781-PA, drosophila Y 99.5 1.4E-14 4.8E-19 134.5 9.6 83 272-354 21-108 (110)
106 2d9p_A Polyadenylate-binding p 99.5 1.8E-14 6.3E-19 132.1 10.2 84 358-441 11-97 (103)
107 2cpj_A Non-POU domain-containi 99.5 1.8E-14 6.2E-19 131.4 10.2 81 273-354 11-91 (99)
108 4a8x_A RNA-binding protein wit 99.5 1.6E-14 5.5E-19 128.1 9.5 78 276-353 3-86 (88)
109 2cq1_A PTB-like protein L; RRM 99.5 2.7E-14 9.2E-19 132.6 11.4 80 360-440 13-94 (101)
110 4a8x_A RNA-binding protein wit 99.5 1.8E-14 6.3E-19 127.7 9.8 79 361-439 3-87 (88)
111 2do4_A Squamous cell carcinoma 99.5 2.8E-14 9.7E-19 130.2 11.3 82 358-439 13-98 (100)
112 2a3j_A U1 small nuclear ribonu 99.5 2E-14 6.8E-19 138.9 10.7 82 273-354 25-112 (127)
113 3bs9_A Nucleolysin TIA-1 isofo 99.5 2.1E-14 7E-19 127.3 9.9 77 361-437 5-86 (87)
114 3ns6_A Eukaryotic translation 99.5 5E-15 1.7E-19 136.2 6.1 78 275-352 4-93 (100)
115 3mdf_A Peptidyl-prolyl CIS-tra 99.5 2.2E-14 7.7E-19 126.5 10.1 76 360-435 5-85 (85)
116 2ywk_A Putative RNA-binding pr 99.5 1.3E-14 4.6E-19 130.8 8.8 79 272-350 11-93 (95)
117 2cq3_A RNA-binding protein 9; 99.5 4.2E-14 1.4E-18 129.7 12.2 84 357-440 10-96 (103)
118 2fy1_A RNA-binding motif prote 99.5 2.6E-14 9E-19 135.0 11.1 82 274-355 4-89 (116)
119 2dgx_A KIAA0430 protein; RRM d 99.5 3.3E-14 1.1E-18 129.5 11.4 80 360-439 7-92 (96)
120 3pgw_S U1-70K; protein-RNA com 99.5 4.9E-15 1.7E-19 170.4 7.3 146 294-439 9-184 (437)
121 2cqb_A Peptidyl-prolyl CIS-tra 99.5 2.1E-14 7.3E-19 131.3 10.1 82 359-440 9-95 (102)
122 2do0_A HnRNP M, heterogeneous 99.5 3.5E-14 1.2E-18 132.5 11.7 81 273-353 11-95 (114)
123 2dng_A Eukaryotic translation 99.5 3.8E-14 1.3E-18 130.2 11.8 82 272-355 10-96 (103)
124 1why_A Hypothetical protein ri 99.5 3.7E-14 1.3E-18 128.8 11.5 79 360-439 15-95 (97)
125 2cqd_A RNA-binding region cont 99.5 3.5E-14 1.2E-18 133.2 11.7 84 271-355 11-99 (116)
126 3md1_A Nuclear and cytoplasmic 99.5 2.6E-14 8.9E-19 125.5 10.1 76 363-438 2-82 (83)
127 2la6_A RNA-binding protein FUS 99.5 2.3E-14 7.8E-19 130.7 10.1 79 272-350 8-99 (99)
128 1nu4_A U1A RNA binding domain; 99.5 1.4E-14 4.7E-19 131.2 8.6 82 273-354 4-91 (97)
129 2cpe_A RNA-binding protein EWS 99.5 2.1E-14 7.2E-19 133.9 9.9 84 272-355 10-106 (113)
130 1fjc_A Nucleolin RBD2, protein 99.5 1.2E-14 4.3E-19 131.4 8.1 82 273-354 12-93 (96)
131 1x4f_A Matrin 3; structural ge 99.5 2.2E-14 7.5E-19 135.9 10.1 82 273-355 21-105 (112)
132 2dgo_A Cytotoxic granule-assoc 99.5 3.8E-14 1.3E-18 132.6 11.6 84 358-441 11-99 (115)
133 1x4d_A Matrin 3; structural ge 99.5 2.1E-14 7E-19 133.8 9.6 78 360-438 13-93 (102)
134 1x4h_A RNA-binding protein 28; 99.5 4.9E-14 1.7E-18 130.6 12.1 84 358-441 11-105 (111)
135 2dgs_A DAZ-associated protein 99.5 3.8E-14 1.3E-18 129.1 11.1 81 359-440 7-92 (99)
136 1wex_A Hypothetical protein (r 99.5 2.7E-14 9.3E-19 133.2 10.3 79 360-439 13-93 (104)
137 2div_A TRNA selenocysteine ass 99.5 2.2E-14 7.4E-19 130.6 9.4 80 274-353 6-95 (99)
138 2e5j_A Methenyltetrahydrofolat 99.5 2.9E-14 9.8E-19 129.8 10.3 81 273-353 15-95 (97)
139 1x4e_A RNA binding motif, sing 99.5 1.7E-14 5.8E-19 127.7 8.5 76 275-350 3-83 (85)
140 1x5u_A Splicing factor 3B subu 99.5 4E-14 1.4E-18 130.2 11.3 83 358-440 11-98 (105)
141 2khc_A Testis-specific RNP-typ 99.5 2.8E-14 9.5E-19 134.1 10.4 79 272-350 35-118 (118)
142 2ad9_A Polypyrimidine tract-bi 99.5 1.9E-14 6.4E-19 137.8 9.3 81 360-441 29-111 (119)
143 2dgt_A RNA-binding protein 30; 99.5 2.9E-14 1E-18 128.3 10.0 81 272-355 5-85 (92)
144 2dnq_A RNA-binding protein 4B; 99.5 3.8E-14 1.3E-18 127.1 10.5 78 360-440 6-83 (90)
145 2ytc_A PRE-mRNA-splicing facto 99.5 2.7E-14 9.4E-19 126.1 9.4 78 272-350 7-85 (85)
146 1oo0_B CG8781-PA, drosophila Y 99.5 4.1E-14 1.4E-18 131.3 11.1 82 359-440 23-109 (110)
147 1u6f_A Tcubp1, RNA-binding pro 99.5 3.2E-14 1.1E-18 137.5 10.7 84 272-355 37-125 (139)
148 2x1f_A MRNA 3'-END-processing 99.5 4.6E-14 1.6E-18 128.0 11.2 79 362-440 2-85 (96)
149 2fc9_A NCL protein; structure 99.5 3.1E-14 1.1E-18 130.1 10.1 83 273-355 11-94 (101)
150 2cqc_A Arginine/serine-rich sp 99.5 5E-14 1.7E-18 126.8 11.3 79 358-436 11-94 (95)
151 2dh8_A DAZ-associated protein 99.5 2.1E-14 7.3E-19 132.2 9.0 84 272-356 11-99 (105)
152 2wbr_A GW182, gawky, LD47780P; 99.5 1.4E-14 4.7E-19 131.5 7.5 73 276-349 6-78 (89)
153 3ex7_B RNA-binding protein 8A; 99.5 2.9E-14 1E-18 135.5 10.2 84 272-355 17-105 (126)
154 1p27_B RNA-binding protein 8A; 99.5 2.9E-14 1E-18 131.3 9.8 81 359-439 20-105 (106)
155 2la4_A Nuclear and cytoplasmic 99.5 1.8E-14 6.2E-19 131.7 8.3 77 275-352 25-101 (101)
156 1x5s_A Cold-inducible RNA-bind 99.5 2.8E-14 9.5E-19 130.5 9.5 81 360-440 10-95 (102)
157 1p1t_A Cleavage stimulation fa 99.5 9.9E-15 3.4E-19 133.8 6.5 81 274-354 5-90 (104)
158 2err_A Ataxin-2-binding protei 99.5 1.9E-14 6.6E-19 134.3 8.5 82 271-352 23-107 (109)
159 2nlw_A Eukaryotic translation 99.5 3E-14 1E-18 132.0 9.7 80 273-352 11-100 (105)
160 2cpx_A Hypothetical protein FL 99.5 4.1E-14 1.4E-18 132.2 10.7 83 273-355 21-108 (115)
161 1wf1_A RNA-binding protein RAL 99.5 2.8E-14 9.6E-19 132.8 9.5 96 339-438 5-101 (110)
162 1x4c_A Splicing factor, argini 99.5 4.8E-14 1.6E-18 131.1 11.1 79 360-440 13-96 (108)
163 2dnz_A Probable RNA-binding pr 99.5 4.7E-14 1.6E-18 127.2 10.7 80 361-440 4-88 (95)
164 1x4g_A Nucleolysin TIAR; struc 99.5 4.1E-14 1.4E-18 131.5 10.5 80 360-440 23-102 (109)
165 2cpz_A CUG triplet repeat RNA- 99.5 3.2E-14 1.1E-18 133.2 9.9 82 359-440 22-108 (115)
166 2cpi_A CCR4-NOT transcription 99.5 2.9E-14 9.9E-19 133.3 9.5 81 273-353 11-102 (111)
167 3ulh_A THO complex subunit 4; 99.5 3.3E-14 1.1E-18 131.1 9.8 79 272-350 24-106 (107)
168 2cq0_A Eukaryotic translation 99.5 3.6E-14 1.2E-18 130.1 10.0 83 358-440 11-98 (103)
169 2lkz_A RNA-binding protein 5; 99.5 1.3E-14 4.6E-19 133.2 7.0 75 362-436 9-94 (95)
170 2dis_A Unnamed protein product 99.5 4.2E-14 1.4E-18 130.9 10.3 82 275-356 6-96 (109)
171 2m2b_A RNA-binding protein 10; 99.5 2.9E-14 1E-18 137.1 9.6 83 272-355 18-111 (131)
172 2dnh_A Bruno-like 5, RNA bindi 99.5 5.6E-14 1.9E-18 129.2 11.0 83 359-441 12-101 (105)
173 1x5o_A RNA binding motif, sing 99.5 8.6E-14 2.9E-18 130.0 12.4 80 273-352 21-112 (114)
174 2e5h_A Zinc finger CCHC-type a 99.5 8.4E-14 2.9E-18 125.3 11.9 78 358-435 12-94 (94)
175 2j76_E EIF-4B, EIF4B, eukaryot 99.5 2.8E-14 9.7E-19 130.8 8.9 79 273-353 15-99 (100)
176 2cpf_A RNA binding motif prote 99.5 3E-14 1E-18 129.3 8.8 80 361-440 4-91 (98)
177 2dgu_A Heterogeneous nuclear r 99.5 5.2E-14 1.8E-18 129.4 10.5 81 273-356 7-87 (103)
178 2jvr_A Nucleolar protein 3; RN 99.5 3.5E-14 1.2E-18 134.2 9.5 78 361-438 27-106 (111)
179 2krb_A Eukaryotic translation 99.5 2.6E-14 8.9E-19 125.8 8.0 71 277-347 1-81 (81)
180 1x5t_A Splicing factor 3B subu 99.5 2.7E-14 9.3E-19 129.0 8.3 80 361-440 4-89 (96)
181 2dgx_A KIAA0430 protein; RRM d 99.5 4.7E-14 1.6E-18 128.4 9.9 80 275-354 7-92 (96)
182 3s7r_A Heterogeneous nuclear r 99.5 3.7E-14 1.3E-18 126.0 8.9 76 273-349 7-87 (87)
183 2dnp_A RNA-binding protein 14; 99.5 5.7E-14 1.9E-18 125.9 10.1 80 273-355 5-84 (90)
184 2dnm_A SRP46 splicing factor; 99.5 5.1E-14 1.7E-18 129.2 10.0 81 359-439 10-95 (103)
185 2cpd_A Apobec-1 stimulating pr 99.5 9.9E-14 3.4E-18 126.5 11.8 80 273-355 11-92 (99)
186 2dgu_A Heterogeneous nuclear r 99.5 6.8E-14 2.3E-18 128.7 10.8 79 360-441 9-87 (103)
187 2fc8_A NCL protein; structure 99.5 6.5E-14 2.2E-18 128.1 10.6 83 273-355 11-95 (102)
188 2cpi_A CCR4-NOT transcription 99.5 5.2E-14 1.8E-18 131.6 10.1 81 358-438 11-102 (111)
189 3ucg_A Polyadenylate-binding p 99.5 3.9E-14 1.3E-18 126.0 8.7 76 276-352 5-85 (89)
190 2ytc_A PRE-mRNA-splicing facto 99.5 5.8E-14 2E-18 124.0 9.8 77 358-435 8-85 (85)
191 2cpj_A Non-POU domain-containi 99.5 5.2E-14 1.8E-18 128.3 9.7 80 359-439 12-91 (99)
192 2dgp_A Bruno-like 4, RNA bindi 99.5 6.2E-14 2.1E-18 129.1 10.3 83 358-440 9-99 (106)
193 2jvo_A Nucleolar protein 3; nu 99.5 4.7E-14 1.6E-18 131.8 9.5 81 357-440 26-106 (108)
194 1whx_A Hypothetical protein ri 99.5 2.9E-14 9.9E-19 133.7 8.1 77 275-352 8-84 (111)
195 1wi8_A EIF-4B, eukaryotic tran 99.5 6.9E-14 2.3E-18 128.7 10.5 80 359-440 12-97 (104)
196 1x4c_A Splicing factor, argini 99.5 8.7E-14 3E-18 129.3 11.2 81 273-355 11-96 (108)
197 2dgt_A RNA-binding protein 30; 99.5 9.4E-14 3.2E-18 125.0 11.0 79 358-439 6-84 (92)
198 2la4_A Nuclear and cytoplasmic 99.5 3.7E-14 1.3E-18 129.6 8.5 76 361-437 26-101 (101)
199 2dnp_A RNA-binding protein 14; 99.5 9E-14 3.1E-18 124.6 10.8 78 359-439 6-83 (90)
200 2err_A Ataxin-2-binding protei 99.5 4.9E-14 1.7E-18 131.5 9.4 81 357-437 24-107 (109)
201 1s79_A Lupus LA protein; RRM, 99.5 4E-14 1.4E-18 131.6 8.8 78 273-351 7-88 (103)
202 2kvi_A Nuclear polyadenylated 99.5 4.6E-14 1.6E-18 128.3 8.9 80 273-355 6-86 (96)
203 2rs2_A Musashi-1, RNA-binding 99.5 4.9E-14 1.7E-18 131.6 9.2 82 273-355 21-107 (109)
204 2cqh_A IGF-II mRNA-binding pro 99.5 2.9E-14 9.8E-19 128.5 7.3 81 274-356 5-87 (93)
205 2cqp_A RNA-binding protein 12; 99.5 3.2E-14 1.1E-18 129.2 7.7 80 273-352 11-95 (98)
206 2ywk_A Putative RNA-binding pr 99.5 6.9E-14 2.4E-18 126.1 9.8 78 359-436 13-94 (95)
207 2cqg_A TDP-43, TAR DNA-binding 99.5 1.3E-13 4.3E-18 126.5 11.7 83 272-356 10-97 (103)
208 2cpd_A Apobec-1 stimulating pr 99.5 1.6E-13 5.4E-18 125.1 12.3 79 358-439 11-91 (99)
209 1x4g_A Nucleolysin TIAR; struc 99.5 7.2E-14 2.5E-18 129.8 10.2 82 273-355 21-102 (109)
210 2jvo_A Nucleolar protein 3; nu 99.5 4.3E-14 1.5E-18 132.0 8.7 81 271-354 25-105 (108)
211 2jvr_A Nucleolar protein 3; RN 99.5 2.7E-14 9.4E-19 134.9 7.3 79 274-352 25-105 (111)
212 2cq4_A RNA binding motif prote 99.5 3.4E-14 1.1E-18 132.9 7.8 80 360-440 23-107 (114)
213 1h2v_Z 20 kDa nuclear CAP bind 99.5 8.1E-14 2.8E-18 137.5 10.9 82 273-354 35-121 (156)
214 2dgv_A HnRNP M, heterogeneous 99.5 5E-14 1.7E-18 126.2 8.6 80 360-439 6-88 (92)
215 2dgw_A Probable RNA-binding pr 99.5 7.1E-14 2.4E-18 125.4 9.5 80 273-354 6-89 (91)
216 1whx_A Hypothetical protein ri 99.5 7.6E-14 2.6E-18 130.9 10.1 77 361-438 9-85 (111)
217 2xnq_A Nuclear polyadenylated 99.5 9.1E-14 3.1E-18 127.1 10.2 77 273-352 18-95 (97)
218 2ek1_A RNA-binding protein 12; 99.5 2.1E-14 7.3E-19 129.4 5.9 77 274-350 12-93 (95)
219 2jrs_A RNA-binding protein 39; 99.5 7.8E-14 2.7E-18 130.2 9.9 82 357-438 21-107 (108)
220 1x5p_A Negative elongation fac 99.5 1.7E-13 5.7E-18 124.7 11.7 80 273-355 11-90 (97)
221 2mss_A Protein (musashi1); RNA 99.5 3.3E-14 1.1E-18 122.8 6.7 70 279-349 1-75 (75)
222 1wg5_A Heterogeneous nuclear r 99.5 1.4E-13 5E-18 127.1 11.4 80 273-353 11-95 (104)
223 1u6f_A Tcubp1, RNA-binding pro 99.5 8.6E-14 2.9E-18 134.4 10.3 84 358-441 38-126 (139)
224 3ns6_A Eukaryotic translation 99.5 2.7E-14 9.3E-19 131.2 6.4 78 361-438 5-94 (100)
225 2e5j_A Methenyltetrahydrofolat 99.5 8.5E-14 2.9E-18 126.6 9.7 79 359-438 16-95 (97)
226 2ki2_A SS-DNA binding protein 99.5 1.9E-14 6.4E-19 128.7 5.1 76 278-354 2-82 (90)
227 2kt5_A RNA and export factor-b 99.5 1.1E-13 3.6E-18 131.6 10.5 83 273-355 31-117 (124)
228 3ex7_B RNA-binding protein 8A; 99.5 8.8E-14 3E-18 132.1 10.0 82 359-440 19-105 (126)
229 1p1t_A Cleavage stimulation fa 99.5 3.1E-14 1E-18 130.5 6.6 82 360-441 6-92 (104)
230 1fjc_A Nucleolin RBD2, protein 99.5 6.5E-14 2.2E-18 126.7 8.6 82 358-439 12-93 (96)
231 2xnq_A Nuclear polyadenylated 99.5 1.6E-13 5.6E-18 125.4 11.4 77 359-438 19-96 (97)
232 3n9u_C Cleavage and polyadenyl 99.5 3.9E-14 1.3E-18 141.2 7.8 78 275-352 53-137 (156)
233 2khc_A Testis-specific RNP-typ 99.5 1.1E-13 3.6E-18 130.1 10.3 77 359-435 37-118 (118)
234 1wf1_A RNA-binding protein RAL 99.5 9.4E-14 3.2E-18 129.2 9.9 78 273-353 23-101 (110)
235 3p5t_L Cleavage and polyadenyl 99.5 1.9E-14 6.7E-19 129.3 4.9 77 363-439 2-85 (90)
236 2dhg_A TRNA selenocysteine ass 99.5 5.3E-14 1.8E-18 129.1 7.8 82 360-441 7-94 (104)
237 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.6E-13 5.4E-18 132.0 11.1 78 272-349 58-140 (140)
238 1nu4_A U1A RNA binding domain; 99.5 1.1E-13 3.6E-18 125.3 9.3 81 360-440 6-92 (97)
239 2kxn_B Transformer-2 protein h 99.5 1E-13 3.5E-18 133.7 9.8 81 359-439 43-128 (129)
240 2cqd_A RNA-binding region cont 99.5 1.2E-13 4.2E-18 129.4 10.1 82 357-439 12-98 (116)
241 2cpe_A RNA-binding protein EWS 99.5 1.1E-13 3.9E-18 128.9 9.7 83 358-440 11-106 (113)
242 1uaw_A Mouse-musashi-1; RNP-ty 99.5 3.8E-14 1.3E-18 122.7 5.8 71 278-349 1-76 (77)
243 1fj7_A Nucleolin RBD1, protein 99.5 3.5E-14 1.2E-18 129.8 5.9 82 273-355 13-98 (101)
244 3ucg_A Polyadenylate-binding p 99.5 1.1E-13 3.8E-18 123.0 9.0 76 361-437 5-85 (89)
245 2a3j_A U1 small nuclear ribonu 99.5 1.6E-13 5.5E-18 132.5 10.7 82 360-441 27-114 (127)
246 2fy1_A RNA-binding motif prote 99.5 1.1E-13 3.9E-18 130.7 9.5 79 361-439 6-88 (116)
247 2do0_A HnRNP M, heterogeneous 99.5 1.8E-13 6E-18 127.6 10.6 81 359-439 12-96 (114)
248 2kt5_A RNA and export factor-b 99.5 3.1E-13 1.1E-17 128.3 12.5 81 358-438 31-115 (124)
249 2dng_A Eukaryotic translation 99.5 1.8E-13 6.3E-18 125.6 10.5 81 358-440 11-96 (103)
250 2cqh_A IGF-II mRNA-binding pro 99.5 7.6E-14 2.6E-18 125.7 7.5 79 360-440 6-86 (93)
251 2cq4_A RNA binding motif prote 99.5 3.3E-14 1.1E-18 133.0 5.3 79 274-353 22-105 (114)
252 2la6_A RNA-binding protein FUS 99.5 1.6E-13 5.6E-18 125.1 9.8 78 358-435 9-99 (99)
253 1x4b_A Heterogeneous nuclear r 99.5 8.9E-14 3E-18 130.4 8.1 82 274-356 24-110 (116)
254 1h2v_Z 20 kDa nuclear CAP bind 99.5 2.2E-13 7.5E-18 134.4 11.0 81 360-440 37-122 (156)
255 1x5p_A Negative elongation fac 99.4 3.9E-13 1.3E-17 122.3 11.8 78 360-440 13-90 (97)
256 2nlw_A Eukaryotic translation 99.4 2E-13 6.9E-18 126.4 10.0 80 359-438 12-101 (105)
257 1x4f_A Matrin 3; structural ge 99.4 7.6E-14 2.6E-18 132.2 7.2 80 360-440 23-105 (112)
258 3zzy_A Polypyrimidine tract-bi 99.4 1.8E-13 6.2E-18 132.9 10.0 78 361-438 27-107 (130)
259 2fc9_A NCL protein; structure 99.4 2.1E-13 7.3E-18 124.5 10.0 82 358-439 11-93 (101)
260 2kvi_A Nuclear polyadenylated 99.4 1.2E-13 4.2E-18 125.5 8.3 78 360-440 8-86 (96)
261 1wg1_A KIAA1579 protein, homol 99.4 9E-14 3.1E-18 124.4 7.2 76 275-352 3-78 (88)
262 3ulh_A THO complex subunit 4; 99.4 2.2E-13 7.5E-18 125.6 10.0 77 359-435 26-106 (107)
263 1rk8_A CG8781-PA, CG8781-PA pr 99.4 1.6E-13 5.5E-18 137.0 9.6 85 271-355 66-155 (165)
264 2dis_A Unnamed protein product 99.4 2E-13 6.9E-18 126.2 9.6 80 361-440 7-95 (109)
265 3lqv_A PRE-mRNA branch site pr 99.4 1.9E-13 6.6E-18 127.7 9.4 80 361-440 7-88 (115)
266 1s79_A Lupus LA protein; RRM, 99.4 1.7E-13 5.7E-18 127.4 8.9 79 359-438 8-90 (103)
267 1x4b_A Heterogeneous nuclear r 99.4 1.2E-13 4.1E-18 129.5 7.9 81 359-440 24-109 (116)
268 2j76_E EIF-4B, EIF4B, eukaryot 99.4 9.8E-14 3.3E-18 127.2 7.2 78 359-438 16-99 (100)
269 1wel_A RNA-binding protein 12; 99.4 5.9E-14 2E-18 133.6 5.9 79 273-352 21-104 (124)
270 2e44_A Insulin-like growth fac 99.4 3.8E-13 1.3E-17 121.6 10.9 80 274-353 12-93 (96)
271 2jwn_A Embryonic polyadenylate 99.4 3.3E-14 1.1E-18 134.7 4.1 77 361-438 35-116 (124)
272 3d2w_A TAR DNA-binding protein 99.4 3E-13 1E-17 122.0 10.0 77 359-439 8-86 (89)
273 2cpx_A Hypothetical protein FL 99.4 2.4E-13 8.2E-18 126.9 9.6 82 359-440 22-108 (115)
274 2fc8_A NCL protein; structure 99.4 3.5E-13 1.2E-17 123.2 10.3 84 357-440 10-95 (102)
275 2jwn_A Embryonic polyadenylate 99.4 2.1E-13 7.1E-18 129.2 9.1 77 276-353 35-116 (124)
276 2div_A TRNA selenocysteine ass 99.4 1.4E-13 5E-18 125.1 7.7 79 360-438 7-95 (99)
277 2cq2_A Hypothetical protein LO 99.4 2.1E-13 7.2E-18 129.6 8.9 80 273-353 21-107 (114)
278 1wg1_A KIAA1579 protein, homol 99.4 2.2E-13 7.7E-18 121.8 8.4 76 361-438 4-79 (88)
279 2dh8_A DAZ-associated protein 99.4 1.5E-13 5E-18 126.5 7.4 82 358-440 12-98 (105)
280 3s7r_A Heterogeneous nuclear r 99.4 3.5E-13 1.2E-17 119.7 9.5 76 358-434 7-87 (87)
281 2cqp_A RNA-binding protein 12; 99.4 1.4E-13 4.9E-18 124.9 7.1 78 360-437 13-95 (98)
282 1wez_A HnRNP H', FTP-3, hetero 99.4 2.8E-13 9.6E-18 125.4 9.2 79 273-353 11-93 (102)
283 3n9u_C Cleavage and polyadenyl 99.4 1.7E-13 5.8E-18 136.6 8.2 81 361-441 54-141 (156)
284 2e44_A Insulin-like growth fac 99.4 5.3E-13 1.8E-17 120.7 10.7 79 360-438 13-93 (96)
285 2rs2_A Musashi-1, RNA-binding 99.4 3.6E-13 1.2E-17 125.7 9.8 82 358-440 21-107 (109)
286 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 5.9E-13 2E-17 128.0 11.6 77 358-434 59-140 (140)
287 3egn_A RNA-binding protein 40; 99.4 2.9E-13 9.9E-18 131.6 9.3 82 274-355 42-133 (143)
288 2cpy_A RNA-binding protein 12; 99.4 9.1E-14 3.1E-18 130.6 5.5 80 273-353 11-95 (114)
289 2e5g_A U6 snRNA-specific termi 99.4 7.5E-13 2.6E-17 119.7 11.3 81 274-355 5-85 (94)
290 2mss_A Protein (musashi1); RNA 99.4 1.7E-13 5.9E-18 118.3 6.8 70 364-434 1-75 (75)
291 1x5o_A RNA binding motif, sing 99.4 5E-13 1.7E-17 124.8 10.1 79 359-437 22-112 (114)
292 2ek1_A RNA-binding protein 12; 99.4 1.3E-13 4.5E-18 124.2 5.9 76 361-436 14-94 (95)
293 2diu_A KIAA0430 protein; struc 99.4 4.3E-13 1.5E-17 123.1 9.3 76 275-355 6-87 (96)
294 2xs2_A Deleted in azoospermia- 99.4 7.9E-14 2.7E-18 127.7 4.4 81 273-355 5-89 (102)
295 2lcw_A RNA-binding protein FUS 99.1 1.8E-14 6E-19 135.4 0.0 83 273-355 3-98 (116)
296 3d2w_A TAR DNA-binding protein 99.4 3.9E-13 1.3E-17 121.3 8.7 78 273-354 7-86 (89)
297 2m2b_A RNA-binding protein 10; 99.4 1.6E-13 5.5E-18 131.9 6.6 81 358-439 19-110 (131)
298 1sjr_A Polypyrimidine tract-bi 99.4 6.3E-13 2.2E-17 133.8 11.1 81 274-354 43-126 (164)
299 1iqt_A AUF1, heterogeneous nuc 99.4 1.2E-13 4E-18 119.2 4.9 70 279-349 1-75 (75)
300 1sjr_A Polypyrimidine tract-bi 99.4 4.2E-13 1.4E-17 135.1 9.6 78 361-438 45-125 (164)
301 1fj7_A Nucleolin RBD1, protein 99.4 1.7E-13 5.8E-18 125.2 6.2 79 360-440 15-98 (101)
302 1x4e_A RNA binding motif, sing 99.4 1.1E-13 3.7E-18 122.5 4.7 76 361-436 4-84 (85)
303 2ki2_A SS-DNA binding protein 99.4 9.4E-14 3.2E-18 124.2 4.3 76 363-439 2-82 (90)
304 2e5i_A Heterogeneous nuclear r 99.4 6.5E-13 2.2E-17 128.0 10.4 75 363-438 26-103 (124)
305 2cqg_A TDP-43, TAR DNA-binding 99.4 8.5E-13 2.9E-17 121.0 10.6 80 358-439 11-95 (103)
306 2dgw_A Probable RNA-binding pr 99.4 5.1E-13 1.8E-17 119.7 8.9 77 360-438 8-88 (91)
307 2cq2_A Hypothetical protein LO 99.4 4.5E-13 1.5E-17 127.3 9.0 78 360-438 23-107 (114)
308 3beg_B Splicing factor, argini 99.4 4.5E-13 1.5E-17 126.3 8.9 76 361-438 15-95 (115)
309 2lmi_A GRSF-1, G-rich sequence 99.4 2.1E-13 7E-18 126.7 6.3 79 273-352 7-92 (107)
310 3zzy_A Polypyrimidine tract-bi 99.4 4.5E-13 1.5E-17 130.1 8.9 79 276-354 27-108 (130)
311 2db1_A Heterogeneous nuclear r 99.4 2.9E-13 9.9E-18 128.2 7.4 77 274-351 14-97 (118)
312 2krb_A Eukaryotic translation 99.4 2.7E-13 9.3E-18 119.3 6.5 69 363-431 2-80 (81)
313 2cpy_A RNA-binding protein 12; 99.4 3E-13 1E-17 127.0 7.1 82 359-441 12-98 (114)
314 1uaw_A Mouse-musashi-1; RNP-ty 99.4 2.7E-13 9.1E-18 117.4 5.9 71 363-434 1-76 (77)
315 2e5g_A U6 snRNA-specific termi 99.4 7.7E-13 2.6E-17 119.6 9.2 78 361-439 7-84 (94)
316 3q2s_C Cleavage and polyadenyl 99.4 2.9E-13 9.8E-18 142.9 7.3 76 276-351 67-149 (229)
317 2hzc_A Splicing factor U2AF 65 99.4 4.9E-13 1.7E-17 118.4 7.5 72 275-348 4-86 (87)
318 2hgl_A HNRPF protein, heteroge 99.4 2.3E-13 7.8E-18 133.0 5.8 79 360-439 42-127 (136)
319 3beg_B Splicing factor, argini 99.4 7.3E-13 2.5E-17 124.8 9.0 77 274-352 13-94 (115)
320 1wf0_A TDP-43, TAR DNA-binding 99.4 3.8E-13 1.3E-17 120.0 6.7 79 275-355 3-81 (88)
321 2hgl_A HNRPF protein, heteroge 99.4 2.2E-13 7.6E-18 133.1 5.6 78 273-351 40-124 (136)
322 1wg5_A Heterogeneous nuclear r 99.4 1E-12 3.4E-17 121.5 9.6 78 360-438 13-95 (104)
323 2f3j_A RNA and export factor b 99.4 8.4E-13 2.9E-17 134.1 9.2 80 273-352 84-167 (177)
324 2bz2_A Negative elongation fac 99.4 9.4E-13 3.2E-17 125.7 8.8 79 273-354 35-113 (121)
325 3u1l_A PRE-mRNA-splicing facto 99.4 1E-12 3.4E-17 140.0 9.9 105 335-440 107-232 (240)
326 2e5i_A Heterogeneous nuclear r 99.4 1.4E-12 4.7E-17 125.7 9.7 76 278-354 26-104 (124)
327 2db1_A Heterogeneous nuclear r 99.4 3.8E-13 1.3E-17 127.4 5.8 78 360-438 15-99 (118)
328 1wf0_A TDP-43, TAR DNA-binding 99.4 4.4E-13 1.5E-17 119.6 5.8 76 361-440 4-81 (88)
329 2hgn_A Heterogeneous nuclear r 99.4 2.6E-13 8.8E-18 133.2 4.1 121 314-439 1-125 (139)
330 2dnn_A RNA-binding protein 12; 99.4 8.4E-13 2.9E-17 124.2 7.4 76 274-351 13-92 (109)
331 2hzc_A Splicing factor U2AF 65 99.3 2E-12 7E-17 114.4 9.3 71 361-433 5-86 (87)
332 2lmi_A GRSF-1, G-rich sequence 99.3 4E-13 1.4E-17 124.8 4.9 80 360-440 9-95 (107)
333 2hgn_A Heterogeneous nuclear r 99.3 5.1E-13 1.7E-17 131.0 5.7 80 273-354 42-125 (139)
334 3egn_A RNA-binding protein 40; 99.3 2.1E-12 7.3E-17 125.5 10.0 81 360-440 43-133 (143)
335 2dnn_A RNA-binding protein 12; 99.3 1.7E-12 5.7E-17 122.1 8.7 75 361-437 15-93 (109)
336 1wel_A RNA-binding protein 12; 99.3 2.8E-13 9.7E-18 128.9 3.2 80 360-440 23-107 (124)
337 2lcw_A RNA-binding protein FUS 99.0 1.1E-13 3.6E-18 130.0 0.0 81 360-440 5-98 (116)
338 2bz2_A Negative elongation fac 99.3 2.1E-12 7.3E-17 123.2 8.7 78 360-440 37-114 (121)
339 2hgm_A HNRPF protein, heteroge 99.3 1.5E-12 5.2E-17 125.7 7.7 77 273-351 38-120 (126)
340 1wez_A HnRNP H', FTP-3, hetero 99.3 1.2E-12 4E-17 121.2 6.5 77 360-438 13-93 (102)
341 1iqt_A AUF1, heterogeneous nuc 99.3 7.3E-13 2.5E-17 114.2 4.8 70 364-434 1-75 (75)
342 2voo_A Lupus LA protein; RNA-b 99.3 4.3E-12 1.5E-16 130.5 11.1 114 323-437 63-187 (193)
343 2diu_A KIAA0430 protein; struc 99.3 3.3E-12 1.1E-16 117.3 8.9 73 362-439 9-86 (96)
344 3q2s_C Cleavage and polyadenyl 99.3 8.4E-13 2.9E-17 139.3 5.7 79 361-439 67-152 (229)
345 2xs2_A Deleted in azoospermia- 99.3 1.1E-12 3.8E-17 120.0 5.6 79 359-439 6-88 (102)
346 2dha_A FLJ20171 protein; RRM d 99.3 6.6E-13 2.3E-17 127.6 4.3 76 275-351 21-104 (123)
347 3u1l_A PRE-mRNA-splicing facto 99.3 2.8E-12 9.5E-17 136.6 8.8 81 274-355 131-232 (240)
348 2dnl_A Cytoplasmic polyadenyla 99.3 4.4E-12 1.5E-16 119.0 8.8 74 274-350 5-86 (114)
349 2f3j_A RNA and export factor b 99.3 5.5E-12 1.9E-16 128.1 10.0 79 360-438 86-168 (177)
350 2dit_A HIV TAT specific factor 99.3 1.4E-11 4.7E-16 115.4 11.2 83 273-355 11-105 (112)
351 3pgw_S U1-70K; protein-RNA com 99.3 5.3E-12 1.8E-16 145.2 9.7 81 274-354 99-184 (437)
352 2hgm_A HNRPF protein, heteroge 99.3 4.6E-12 1.6E-16 122.4 6.5 77 360-438 40-122 (126)
353 2dha_A FLJ20171 protein; RRM d 99.2 2.3E-12 7.8E-17 123.9 3.9 80 361-441 22-109 (123)
354 2pe8_A Splicing factor 45; RRM 99.2 2.2E-11 7.5E-16 113.7 10.4 77 360-436 6-93 (105)
355 2dit_A HIV TAT specific factor 99.2 2.6E-11 9E-16 113.5 10.9 82 358-439 11-104 (112)
356 2pe8_A Splicing factor 45; RRM 99.2 2.2E-11 7.5E-16 113.7 9.5 78 274-351 5-93 (105)
357 2dnl_A Cytoplasmic polyadenyla 99.2 2.5E-11 8.5E-16 113.9 9.2 78 361-441 7-92 (114)
358 2voo_A Lupus LA protein; RNA-b 99.2 2.6E-11 8.8E-16 124.7 8.8 75 276-351 108-186 (193)
359 2j8a_A Histone-lysine N-methyl 99.2 1.6E-11 5.3E-16 118.9 5.0 73 278-350 3-94 (136)
360 3v4m_A Splicing factor U2AF 65 99.1 8.8E-11 3E-15 109.5 9.4 76 361-436 4-96 (105)
361 3v4m_A Splicing factor U2AF 65 99.1 1.5E-10 5.2E-15 107.9 8.6 77 275-351 3-96 (105)
362 2d9o_A DNAJ (HSP40) homolog, s 99.1 2.3E-10 7.9E-15 106.1 9.6 66 372-439 27-92 (100)
363 2d9o_A DNAJ (HSP40) homolog, s 99.1 6.7E-10 2.3E-14 103.0 12.2 66 287-354 27-92 (100)
364 2j8a_A Histone-lysine N-methyl 99.1 9.8E-11 3.4E-15 113.3 5.7 77 363-439 3-98 (136)
365 1jmt_A Splicing factor U2AF 35 99.0 8.7E-11 3E-15 109.3 4.3 68 367-434 20-103 (104)
366 3tht_A Alkylated DNA repair pr 99.0 2.5E-10 8.4E-15 127.5 8.7 77 273-350 14-97 (345)
367 1jmt_A Splicing factor U2AF 35 99.0 7E-11 2.4E-15 109.9 3.6 68 282-349 20-103 (104)
368 3ue2_A Poly(U)-binding-splicin 99.0 3.5E-10 1.2E-14 107.9 8.3 75 276-350 19-107 (118)
369 3ue2_A Poly(U)-binding-splicin 99.0 4.7E-10 1.6E-14 107.0 8.6 76 361-436 19-108 (118)
370 3tht_A Alkylated DNA repair pr 99.0 4.5E-10 1.5E-14 125.4 9.7 76 359-435 15-97 (345)
371 3s6e_A RNA-binding protein 39; 99.0 7.6E-10 2.6E-14 105.0 9.8 78 360-437 5-93 (114)
372 3s6e_A RNA-binding protein 39; 98.9 4.4E-09 1.5E-13 99.7 8.5 76 275-350 5-91 (114)
373 2dnr_A Synaptojanin-1; RRM dom 98.8 2E-08 6.7E-13 91.5 9.1 74 360-437 5-86 (91)
374 1owx_A Lupus LA protein, SS-B, 98.7 2.5E-08 8.4E-13 95.7 8.0 84 360-444 16-103 (121)
375 1ufw_A Synaptojanin 2; RNP dom 98.5 1.4E-07 4.9E-12 86.4 6.8 74 359-436 12-94 (95)
376 1owx_A Lupus LA protein, SS-B, 98.5 4.3E-07 1.5E-11 87.1 10.2 77 273-350 14-94 (121)
377 2dnr_A Synaptojanin-1; RRM dom 98.5 1.8E-07 6.1E-12 85.2 6.9 74 275-352 5-86 (91)
378 3dxb_A Thioredoxin N-terminall 98.4 8.3E-07 2.8E-11 92.1 9.5 64 373-436 140-212 (222)
379 3dxb_A Thioredoxin N-terminall 98.3 1.1E-06 3.7E-11 91.2 7.9 62 289-350 141-211 (222)
380 1ufw_A Synaptojanin 2; RNP dom 98.1 2E-06 6.9E-11 78.8 5.7 74 273-350 11-93 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.1 5.7E-06 1.9E-10 77.5 8.7 73 361-434 20-97 (117)
382 2dhx_A Poly (ADP-ribose) polym 97.4 0.0011 3.8E-08 61.6 10.9 89 275-375 6-99 (104)
383 2l9w_A U4/U6 snRNA-associated- 97.2 0.00053 1.8E-08 64.4 6.9 72 275-347 19-95 (117)
384 2dhx_A Poly (ADP-ribose) polym 96.8 0.005 1.7E-07 57.2 9.1 77 361-441 7-88 (104)
385 1wey_A Calcipressin 1; structu 96.5 0.0027 9.3E-08 59.1 5.8 76 362-438 5-85 (104)
386 1wey_A Calcipressin 1; structu 96.4 0.0035 1.2E-07 58.4 5.4 76 277-353 5-85 (104)
387 1wwh_A Nucleoporin 35, nucleop 96.3 0.013 4.5E-07 55.9 8.8 75 359-436 21-96 (119)
388 1uw4_A UPF3X; nonsense mediate 95.3 0.037 1.3E-06 50.4 7.4 64 278-341 2-72 (91)
389 1whv_A Poly(A)-specific ribonu 95.2 0.04 1.4E-06 50.7 7.2 55 277-335 16-70 (100)
390 1uw4_A UPF3X; nonsense mediate 94.8 0.057 2E-06 49.1 7.1 62 363-424 2-70 (91)
391 1wwh_A Nucleoporin 35, nucleop 94.7 0.068 2.3E-06 51.0 7.4 72 275-349 22-94 (119)
392 3ctr_A Poly(A)-specific ribonu 94.5 0.043 1.5E-06 50.7 5.5 54 278-335 7-60 (101)
393 3p3d_A Nucleoporin 53; structu 93.6 0.077 2.6E-06 51.4 5.4 73 362-436 7-98 (132)
394 1whv_A Poly(A)-specific ribonu 92.8 0.21 7.2E-06 46.0 6.7 55 362-420 16-70 (100)
395 3pq1_A Poly(A) RNA polymerase; 92.6 0.052 1.8E-06 62.8 3.2 56 361-417 52-107 (464)
396 3pq1_A Poly(A) RNA polymerase; 92.0 0.063 2.1E-06 62.1 2.9 56 276-332 52-107 (464)
397 2l08_A Regulator of nonsense t 91.1 0.28 9.7E-06 45.1 5.6 67 275-341 7-80 (97)
398 3p3d_A Nucleoporin 53; structu 91.0 0.18 6.1E-06 48.8 4.4 72 277-350 7-97 (132)
399 3ctr_A Poly(A)-specific ribonu 90.9 0.23 7.7E-06 45.9 4.8 54 363-420 7-60 (101)
400 2l08_A Regulator of nonsense t 90.1 0.31 1.1E-05 44.9 4.9 63 362-424 9-78 (97)
401 3d45_A Poly(A)-specific ribonu 69.6 9.4 0.00032 44.6 8.4 56 277-336 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 60.8 15 0.00052 42.8 7.9 56 362-421 440-495 (507)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.4e-33 Score=302.95 Aligned_cols=235 Identities=15% Similarity=0.175 Sum_probs=199.2
Q ss_pred CccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 002123 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 227 (964)
Q Consensus 149 ~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpdEdDL~sG~SkGfGFV~f~~t~edaeei~ 227 (964)
..|||+||+. ++.+.|.+. |.. +| |+... -+.++|||||+| .+.++|+ +
T Consensus 23 ~~l~V~nLp~~~te~~l~~~--------------F~~--------~G-i~~~~----~~~~~g~afV~f-~~~~~A~--~ 72 (284)
T 3smz_A 23 RKILIRGLPGDVTNQEVHDL--------------LSD--------YE-LKYCF----VDKYKGTAFVTL-LNGEQAE--A 72 (284)
T ss_dssp CEEEEECCCTTCCHHHHHHH--------------TTT--------SC-EEEEE----EETTTTEEEEEE-SSHHHHH--H
T ss_pred CEEEEeCCCCCCCHHHHHHH--------------HHH--------cC-CEEEE----EecCCCEEEEEe-CCHHHHH--H
Confidence 5799999998 888888888 733 34 22211 156899999995 5788878 8
Q ss_pred HHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEE
Q 002123 228 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI 307 (964)
Q Consensus 228 ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~sv 307 (964)
|+..++|..+. +..+.+.. ....++|||+|||.++|+++|+++|++||.|..+
T Consensus 73 A~~~l~~~~~~-g~~i~v~~--------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~ 125 (284)
T 3smz_A 73 AINAFHQSRLR-ERELSVQL--------------------------QPTDALLCVANLPPSLTQQQFEELVRPFGSLERC 125 (284)
T ss_dssp HHHHHTTCEET-TEECEEEE--------------------------CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEE
T ss_pred HHHHcCCCeeC-CeEEEEEe--------------------------cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEE
Confidence 99999999997 33322211 1245799999999999999999999999999999
Q ss_pred Ee-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCCCCCccCCcceEEEeccCCCC-cHHHHHH
Q 002123 308 YT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSV-STEELHQ 381 (964)
Q Consensus 308 ki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~~~~~~~~~tLfV~NLp~~v-TeedLre 381 (964)
++ +++++|||||+|.+.++|.+|++.|+|..+.|++|.|.++.++... .......+|||+|||..+ ++++|++
T Consensus 126 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~-~~~~~~~~l~v~nlp~~~~~~~~l~~ 204 (284)
T 3smz_A 126 FLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT-PALLHSRCLCVDRLPPGFNDVDALCR 204 (284)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC-TTTTSCSEEEEECCCTTCCCHHHHHH
T ss_pred EEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC-cccCCccEEEEecCCcccCCHHHHHH
Confidence 75 6778999999999999999999999999999999999999876543 233456799999999995 9999999
Q ss_pred HhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCchhh
Q 002123 382 IFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR 441 (964)
Q Consensus 382 lFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~r~ 441 (964)
+|++||.|.+|++..+ ++|||||+|.+.++|.+|++.|||..|+|++|+|.++.++..++
T Consensus 205 ~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 205 ALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp HTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHH
T ss_pred HhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCccc
Confidence 9999999999998754 57899999999999999999999999999999999999998766
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.98 E-value=2.2e-32 Score=294.85 Aligned_cols=237 Identities=15% Similarity=0.196 Sum_probs=188.9
Q ss_pred CCCccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhh
Q 002123 147 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLED 225 (964)
Q Consensus 147 sl~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpdEdDL~sG~SkGfGFV~f~~t~edaee 225 (964)
....|||+||+. ++.+.|.+. |....++..-.+ ..+. .+ ++|||||+|. +.++|+
T Consensus 40 ~~~~l~V~nLp~~~t~~~l~~~--------------F~~~G~i~~v~i---~~~~----~~-~~g~afV~f~-~~~~A~- 95 (292)
T 2ghp_A 40 ELTTVLVKNLPKSYNQNKVYKY--------------FKHCGPIIHVDV---ADSL----KK-NFRFARIEFA-RYDGAL- 95 (292)
T ss_dssp --CEEEEEEECTTCCHHHHHHH--------------HGGGSCEEEEEE---EECT----TS-SSEEEEEEES-SHHHHH-
T ss_pred CCCEEEEeCCCCCCCHHHHHHH--------------HHhcCCeEEEEE---EECC----CC-CcEEEEEEEC-CHHHHH-
Confidence 446899999998 888888888 743332221111 1122 22 6899999954 777777
Q ss_pred hHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCC-cE
Q 002123 226 FDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFG-DI 304 (964)
Q Consensus 226 i~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG-~I 304 (964)
+|+. ++|..+. ++.+.+.. ...++|||+|||.++|+++|+++|++|| .|
T Consensus 96 -~A~~-~~~~~~~-g~~i~v~~---------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i 145 (292)
T 2ghp_A 96 -AAIT-KTHKVVG-QNEIIVSH---------------------------LTECTLWMTNFPPSYTQRNIRDLLQDINVVA 145 (292)
T ss_dssp -HHHT-TTTCEET-TEECEEEE---------------------------CCSCEEEEECCCTTCCHHHHHHHHHHTTCCC
T ss_pred -HHHH-hCCcEeC-CcEEEEEE---------------------------CCCCEEEEECCCCCCCHHHHHHHHHHhCCCe
Confidence 7884 8999997 33322211 1478999999999999999999999999 99
Q ss_pred EEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCCCCC---ccCCcceEEEeccCCC-CcH
Q 002123 305 RTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSE---KDANQGTLVVFNLDSS-VST 376 (964)
Q Consensus 305 ~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~~~---~~~~~~tLfV~NLp~~-vTe 376 (964)
..|++ .++++|||||+|.+.++|++|++.|+|..+.|++|.|.++.++..... ......+|||+|||.. +++
T Consensus 146 ~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~ 225 (292)
T 2ghp_A 146 LSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDE 225 (292)
T ss_dssp CEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCH
T ss_pred EEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCH
Confidence 99986 357899999999999999999999999999999999999987654432 2345679999999999 999
Q ss_pred HHHHHHhhccCceEEEEecCC------CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCc
Q 002123 377 EELHQIFGIYGEIREIRDTQH------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (964)
Q Consensus 377 edLrelFs~fG~I~sIri~~~------skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~ 438 (964)
++|+++|++||.|..|++..+ ++|||||+|.+.++|.+|+ .|||..|+|++|+|.||.++.
T Consensus 226 ~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 226 NLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp HHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred HHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 999999999999999998653 4789999999999999999 999999999999999999863
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=9.7e-31 Score=271.32 Aligned_cols=166 Identities=19% Similarity=0.342 Sum_probs=148.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
..+.++|||+|||+++||++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 456799999999999999999999999999999986 588999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC---CCceEEEeeCCHHHHHHHHHHhCCceeC
Q 002123 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVA 425 (964)
Q Consensus 349 A~~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~---skGfaFVeF~d~esA~kAL~~LNG~~I~ 425 (964)
+..... .......+|||+|||..+++++|+++|++||.|++|+|+.+ ++|||||+|.+.++|++|++.|||..|+
T Consensus 92 ~~~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 92 SQRDPS--LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp CCCCTH--HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred cccccc--ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 865432 12234568999999999999999999999999999998753 5889999999999999999999999999
Q ss_pred CceEEEEeccCCchhh
Q 002123 426 GKQIKLEASRPGGARR 441 (964)
Q Consensus 426 Gr~LkV~~A~~k~~r~ 441 (964)
|++|+|.+|+++.++.
T Consensus 170 g~~i~V~~a~~~~~~~ 185 (213)
T 4f02_A 170 DRKVFVGRFKSRKERE 185 (213)
T ss_dssp TEECEEEECCCHHHHH
T ss_pred CEEEEEEEcCCCcccc
Confidence 9999999999876554
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.6e-29 Score=245.92 Aligned_cols=157 Identities=19% Similarity=0.333 Sum_probs=143.9
Q ss_pred cEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCC
Q 002123 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 353 (964)
Q Consensus 278 rtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~ 353 (964)
|+|||+|||.++|+++|+++|++||+|.+|++ .++++|||||+|.+.++|++|++.|+|..+.|+.|.|.++.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999999999987 46789999999999999999999999999999999999997665
Q ss_pred CCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCce
Q 002123 354 NPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428 (964)
Q Consensus 354 ~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~ 428 (964)
. .......+|||+|||..+++++|+++|++||.|.++++..+ ++|||||+|.+.++|.+|++.|||..++|++
T Consensus 81 ~--~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 81 Q--SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp C--CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred C--CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 4 23445679999999999999999999999999999988643 5789999999999999999999999999999
Q ss_pred EEEEeccC
Q 002123 429 IKLEASRP 436 (964)
Q Consensus 429 LkV~~A~~ 436 (964)
|+|.||++
T Consensus 159 i~v~~a~~ 166 (166)
T 3md3_A 159 LRINWAAK 166 (166)
T ss_dssp CEEEESCC
T ss_pred EEEEecCC
Confidence 99999874
No 5
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=7e-29 Score=266.39 Aligned_cols=195 Identities=16% Similarity=0.285 Sum_probs=172.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCC
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~ 354 (964)
.++++|||+|||.++|+++|+++|++|| |..|++ ++++|||||+|.+.++|++|++.|+|..+.|++|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 3569999999999999999999999999 999998 8999999999999999999999999999999999999864
Q ss_pred CCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceE
Q 002123 355 PSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429 (964)
Q Consensus 355 ~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~L 429 (964)
...+|||+|||..+++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+|++.|+|..++|++|
T Consensus 94 ------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 94 ------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp ------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred ------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 2468999999999999999999999999999988643 57899999999999999999999999999999
Q ss_pred EEEeccCCchhhhcchhhhhcccCccc-CCCCCCC-Chhhc----ccCcceEEE---ecCCCCccee
Q 002123 430 KLEASRPGGARRFMVQSEQEQDDLNLC-QIPFDDL-SSGQM----VSSGVITST---CMDNGSIQVL 487 (964)
Q Consensus 430 kV~~A~~k~~r~~~qq~eq~q~E~nL~-kNLp~s~-tee~L----s~fG~I~s~---~~enG~~rGf 487 (964)
+|.++.++.... ......+|| +|||.++ ++++| ..||.|..+ ...+|..+||
T Consensus 168 ~v~~a~~~~~~~------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~ 228 (284)
T 3smz_A 168 YVHWTDAGQLTP------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGF 228 (284)
T ss_dssp EEEECCGGGCCT------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEE
T ss_pred EEEECCCCCCCc------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccE
Confidence 999998754321 122345677 9999996 88888 889999888 4467888887
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=1.1e-28 Score=242.86 Aligned_cols=155 Identities=23% Similarity=0.425 Sum_probs=143.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
++++|||+|||+++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 5789999999999999999999999999999976 57789999999999999999999999999999999999998
Q ss_pred CCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeC
Q 002123 351 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVA 425 (964)
Q Consensus 351 ~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~ 425 (964)
++.. .....+|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|.+|++.|||..+.
T Consensus 82 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 82 PGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp CCSS----TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 7543 345679999999999999999999999999999998654 3689999999999999999999999998
Q ss_pred C--ceEEEEec
Q 002123 426 G--KQIKLEAS 434 (964)
Q Consensus 426 G--r~LkV~~A 434 (964)
| ++|+|.+|
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 7 99999986
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=1.4e-28 Score=240.86 Aligned_cols=155 Identities=25% Similarity=0.431 Sum_probs=142.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
++++|||+|||+++|+++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 3689999999999999999999999999999976 67789999999999999999999999999999999999998
Q ss_pred CCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeC
Q 002123 351 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVA 425 (964)
Q Consensus 351 ~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~ 425 (964)
++.. .....+|||+|||..+++++|+++|++||.|.++++..+ ++|||||+|.+.++|.+|++.|||..+.
T Consensus 81 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 81 PSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp CCCG----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 6542 345678999999999999999999999999999998654 4789999999999999999999999999
Q ss_pred Cce--EEEEec
Q 002123 426 GKQ--IKLEAS 434 (964)
Q Consensus 426 Gr~--LkV~~A 434 (964)
|+. |+|.||
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 964 888886
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=9.8e-29 Score=249.42 Aligned_cols=168 Identities=18% Similarity=0.332 Sum_probs=142.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
....+.++|||+|||+++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 45567899999999999999999999999999999976 577899999999999999999974 999999999999
Q ss_pred eecCCCCCCC--CccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHh
Q 002123 347 HYSIPKDNPS--EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTL 419 (964)
Q Consensus 347 ~~A~~k~~~~--~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~L 419 (964)
.++.++.... ......++|||+|||.++++++|+++|++||.|..|++..+ ++|||||+|.+.++|.+|++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~- 165 (196)
T 1l3k_A 87 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ- 165 (196)
T ss_dssp EECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-
T ss_pred ecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-
Confidence 9997765432 22345579999999999999999999999999999998654 578999999999999999985
Q ss_pred CCceeCCceEEEEeccCCchhh
Q 002123 420 NRSDVAGKQIKLEASRPGGARR 441 (964)
Q Consensus 420 NG~~I~Gr~LkV~~A~~k~~r~ 441 (964)
+|..|+|+.|.|.+|.++.+..
T Consensus 166 ~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 166 KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp SCCEETTEECEEEECC------
T ss_pred CCcEECCEEEEEEecCChhHhc
Confidence 8999999999999999987654
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=1.4e-28 Score=251.89 Aligned_cols=166 Identities=18% Similarity=0.361 Sum_probs=147.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
.+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34689999999999999999999999999999987 6779999999999999999999999999999999999988
Q ss_pred CCCCCCC-------CccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHH
Q 002123 350 IPKDNPS-------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALR 417 (964)
Q Consensus 350 ~~k~~~~-------~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~ 417 (964)
..+.... ......++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|.+|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 7654221 11234579999999999999999999999999999998754 47899999999999999999
Q ss_pred HhCCceeCCceEEEEeccCCchh
Q 002123 418 TLNRSDVAGKQIKLEASRPGGAR 440 (964)
Q Consensus 418 ~LNG~~I~Gr~LkV~~A~~k~~r 440 (964)
.|||..|+|++|+|.++.++...
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCSST
T ss_pred HccCCEeCCcEEEEEEecCCCCC
Confidence 99999999999999999986543
No 10
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=3.1e-28 Score=261.15 Aligned_cols=164 Identities=24% Similarity=0.454 Sum_probs=148.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHH----HhhccCCcEEEEEe--cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLr----elFs~fG~I~svki--tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
...++++|||+|||.++|+++|+ ++|++||.|.+|++ ++++||||||+|.+.++|++|++.|+|..|.|+.|.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 45678999999999999999977 89999999999987 7889999999999999999999999999999999999
Q ss_pred eecCCCCCCC----------------------------------------------------------------------
Q 002123 347 HYSIPKDNPS---------------------------------------------------------------------- 356 (964)
Q Consensus 347 ~~A~~k~~~~---------------------------------------------------------------------- 356 (964)
.|+..+....
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 9987654200
Q ss_pred -------------------------------------CccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCC
Q 002123 357 -------------------------------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 399 (964)
Q Consensus 357 -------------------------------------~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~sk 399 (964)
......++|||+|||..+++++|+++|++||.|++|++..+.+
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~ 244 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 0112346899999999999999999999999999999998888
Q ss_pred ceEEEeeCCHHHHHHHHHHhCCceeC-CceEEEEeccC
Q 002123 400 NHKFIEFYDIRAAETALRTLNRSDVA-GKQIKLEASRP 436 (964)
Q Consensus 400 GfaFVeF~d~esA~kAL~~LNG~~I~-Gr~LkV~~A~~ 436 (964)
|||||+|.+.++|.+|++.|||..|. |+.|+|.||+.
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 99999999999999999999999999 99999999863
No 11
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=2.4e-28 Score=263.23 Aligned_cols=203 Identities=14% Similarity=0.156 Sum_probs=166.3
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe---cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 271 ~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki---tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
.....+.++|||+|||.++|+++|+++|++||+|..|++ ...++|||||+|.+.++|++|++ +++..+.|+.|.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 345677899999999999999999999999999999987 22368999999999999999995 99999999999999
Q ss_pred ecCCCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccC-ceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCc
Q 002123 348 YSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRS 422 (964)
Q Consensus 348 ~A~~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG-~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~ 422 (964)
++. .++|||+|||..+++++|+++|++|| .|.+|++..+ ++|||||+|.+.++|.+|++.|||.
T Consensus 114 ~~~-----------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 114 HLT-----------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGL 182 (292)
T ss_dssp ECC-----------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTC
T ss_pred ECC-----------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 873 57999999999999999999999999 9999998753 6899999999999999999999999
Q ss_pred eeCCceEEEEeccCCchhhhcchhhhhcccCccc-CCCCCC-CChhhc----ccCcceEEEecC---C--CCccee
Q 002123 423 DVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLC-QIPFDD-LSSGQM----VSSGVITSTCMD---N--GSIQVL 487 (964)
Q Consensus 423 ~I~Gr~LkV~~A~~k~~r~~~qq~eq~q~E~nL~-kNLp~s-~tee~L----s~fG~I~s~~~e---n--G~~rGf 487 (964)
.|.|+.|+|.++.++...... .........|| +|||.+ +++++| ..||.|..+... + |..+||
T Consensus 183 ~~~g~~l~v~~a~~~~~~~~~--~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~ 256 (292)
T 2ghp_A 183 KIEGYTLVTKVSNPLEKSKRT--DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCC 256 (292)
T ss_dssp EETTEECEEEECCCC-----------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEE
T ss_pred EeCCcEEEEEECCCCcccccc--cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceE
Confidence 999999999999886543211 11223345667 999999 999999 889999999442 3 777877
No 12
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=6.3e-28 Score=252.87 Aligned_cols=165 Identities=22% Similarity=0.315 Sum_probs=148.5
Q ss_pred CCCCCcEEEEecCCC-CCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCC
Q 002123 273 GEHPSRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (964)
Q Consensus 273 ~e~~srtLFVgNLP~-~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~ 351 (964)
...++++|||+|||+ ++|+++|+++|++||.|.+|++....+|||||+|.+.++|++|++.|+|..+.|++|.|.++.+
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 345789999999999 9999999999999999999998656699999999999999999999999999999999999975
Q ss_pred CCCCCCc-------------------------------cCCcceEEEeccCCCCcHHHHHHHhhccC-ceEEEEecCCCC
Q 002123 352 KDNPSEK-------------------------------DANQGTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDTQHKH 399 (964)
Q Consensus 352 k~~~~~~-------------------------------~~~~~tLfV~NLp~~vTeedLrelFs~fG-~I~sIri~~~sk 399 (964)
+.....+ .....+|||+|||..+++++|+++|++|| .|.+|+++++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~ 189 (229)
T 2adc_A 110 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDR 189 (229)
T ss_dssp CCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSST
T ss_pred ccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCC
Confidence 5211100 12257899999999999999999999999 999999988789
Q ss_pred ceEEEeeCCHHHHHHHHHHhCCceeC-CceEEEEeccCC
Q 002123 400 NHKFIEFYDIRAAETALRTLNRSDVA-GKQIKLEASRPG 437 (964)
Q Consensus 400 GfaFVeF~d~esA~kAL~~LNG~~I~-Gr~LkV~~A~~k 437 (964)
|||||+|.+.++|.+|++.|||..++ |++|+|.|++++
T Consensus 190 g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 190 KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred cEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99999999999999999999999999 999999999874
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=1.1e-28 Score=245.42 Aligned_cols=162 Identities=20% Similarity=0.278 Sum_probs=145.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEE----ecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svk----itgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
...+.++|||+|||.++|+++|+++|++||.|..+. .+++++|||||+|.+.++|++|++ |+|..+.|++|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 456789999999999999999999999999765421 268899999999999999999995 999999999999999
Q ss_pred cCCCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCce
Q 002123 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428 (964)
Q Consensus 349 A~~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~ 428 (964)
+.++... .....++|||+|||..+++++|+++|++||.|..+...+.++|||||+|.+.++|.+|++.|||..|+|++
T Consensus 88 ~~~~~~~--~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (175)
T 1fje_B 88 PKGRDSK--KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 165 (175)
T ss_dssp CCCSSCS--TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEE
T ss_pred CCCcccc--ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 9876543 34467899999999999999999999999999988444568999999999999999999999999999999
Q ss_pred EEEEeccCC
Q 002123 429 IKLEASRPG 437 (964)
Q Consensus 429 LkV~~A~~k 437 (964)
|+|.||.++
T Consensus 166 i~v~~a~~k 174 (175)
T 1fje_B 166 VSLYYTGEK 174 (175)
T ss_dssp EEEEECSSC
T ss_pred EEEEecCCC
Confidence 999999886
No 14
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=1.6e-28 Score=241.80 Aligned_cols=156 Identities=18% Similarity=0.393 Sum_probs=141.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
++++|||+|||.++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 5789999999999999999999999999999986 578999999999999999999984 678999999999987
Q ss_pred CCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeC
Q 002123 351 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVA 425 (964)
Q Consensus 351 ~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~ 425 (964)
++. .....++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|.+|++ ++|..++
T Consensus 80 ~~~----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 154 (167)
T 2cjk_A 80 PRD----EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK 154 (167)
T ss_dssp CHH----HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS
T ss_pred chh----hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC
Confidence 543 2234579999999999999999999999999999998653 57899999999999999998 9999999
Q ss_pred CceEEEEeccCCc
Q 002123 426 GKQIKLEASRPGG 438 (964)
Q Consensus 426 Gr~LkV~~A~~k~ 438 (964)
|++|+|.+|.++.
T Consensus 155 g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 155 DRKIEIKRAEPRH 167 (167)
T ss_dssp SSCEEEEECCCCC
T ss_pred CeEEEEeecCCCC
Confidence 9999999999863
No 15
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=4.9e-28 Score=239.40 Aligned_cols=154 Identities=16% Similarity=0.339 Sum_probs=141.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccC----C-------cEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccc
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQF----G-------DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKL 344 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~f----G-------~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L 344 (964)
+.++|||+|||+++|+++|+++|++| | .|..+++ ++++|||||+|.+.++|++|+ .|+|..+.|++|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-ETTTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe-cCCCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 57899999999999999999999999 6 7888877 778999999999999999999 899999999999
Q ss_pred eeeecCCCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHh
Q 002123 345 DIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTL 419 (964)
Q Consensus 345 ~V~~A~~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~L 419 (964)
.|.++..... .....+|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|.+|++.|
T Consensus 81 ~v~~~~~~~~----~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 81 KIRRPHDYQP----LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp EEECCSSCCC----CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred eecCCcccCC----CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 9999865432 234689999999999999999999999999999998654 4789999999999999999999
Q ss_pred CCceeCCceEEEEecc
Q 002123 420 NRSDVAGKQIKLEASR 435 (964)
Q Consensus 420 NG~~I~Gr~LkV~~A~ 435 (964)
||..++|++|+|.+|.
T Consensus 157 ~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 157 NGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCCEECCeEEEEEeCC
Confidence 9999999999999973
No 16
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=5e-28 Score=246.08 Aligned_cols=162 Identities=22% Similarity=0.323 Sum_probs=146.6
Q ss_pred CCcEEEEecCCC-CCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCC
Q 002123 276 PSRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (964)
Q Consensus 276 ~srtLFVgNLP~-~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~ 354 (964)
.+++|||+|||+ ++|+++|+++|++||.|..|++....+|||||+|.+.++|++|++.|+|..+.|++|.|.++.++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 368999999999 9999999999999999999998656699999999999999999999999999999999999875421
Q ss_pred CCCc-------------------------------cCCcceEEEeccCCCCcHHHHHHHhhccC-ceEEEEecCCCCceE
Q 002123 355 PSEK-------------------------------DANQGTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDTQHKHNHK 402 (964)
Q Consensus 355 ~~~~-------------------------------~~~~~tLfV~NLp~~vTeedLrelFs~fG-~I~sIri~~~skGfa 402 (964)
...+ .....+|||+|||..+++++|+++|++|| .|.+|++.++.+|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~a 161 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMA 161 (198)
T ss_dssp CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCE
T ss_pred CCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEE
Confidence 1100 12367899999999999999999999999 999999988889999
Q ss_pred EEeeCCHHHHHHHHHHhCCceeC-CceEEEEeccCC
Q 002123 403 FIEFYDIRAAETALRTLNRSDVA-GKQIKLEASRPG 437 (964)
Q Consensus 403 FVeF~d~esA~kAL~~LNG~~I~-Gr~LkV~~A~~k 437 (964)
||+|.+.++|.+|++.|||..++ |++|+|.|++++
T Consensus 162 fV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 162 LIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999999999999999999 999999999874
No 17
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=1.2e-27 Score=248.48 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=139.1
Q ss_pred CCcEEEEecCC-CCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCC
Q 002123 276 PSRTLFVRNIN-SNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (964)
Q Consensus 276 ~srtLFVgNLP-~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~ 354 (964)
++++|||+||| .++|+++|+++|++||.|.+|++....+|||||+|.+.++|++||+.|||+.+.|++|.|.++..+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 57899999999 89999999999999999999998766799999999999999999999999999999999999864321
Q ss_pred CCC------------c---------------------cCCcceEEEeccCCCCcHHHHHHHhhccCce--EEEEecCC--
Q 002123 355 PSE------------K---------------------DANQGTLVVFNLDSSVSTEELHQIFGIYGEI--REIRDTQH-- 397 (964)
Q Consensus 355 ~~~------------~---------------------~~~~~tLfV~NLp~~vTeedLrelFs~fG~I--~sIri~~~-- 397 (964)
.+. + ..+..+|||+|||+++|+++|+++|++||.| .+|+++.+
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~ 162 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS 162 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC
Confidence 100 0 0124579999999999999999999999999 89998764
Q ss_pred -CCceEEEeeCCHHHHHHHHHHhCCceeCCc----eEEEEec
Q 002123 398 -KHNHKFIEFYDIRAAETALRTLNRSDVAGK----QIKLEAS 434 (964)
Q Consensus 398 -skGfaFVeF~d~esA~kAL~~LNG~~I~Gr----~LkV~~A 434 (964)
++|||||+|.+.++|.+||..|||..|.|+ ++.|++|
T Consensus 163 ~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 163 ERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 468999999999999999999999999876 6777665
No 18
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=9.4e-28 Score=237.20 Aligned_cols=157 Identities=18% Similarity=0.384 Sum_probs=139.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cC--CccceEEEEeCCHHHHHHHHHHccCCccc---cccce
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----AC--KHRGFVMISYYDIRAARNAMKALQNKPLR---RRKLD 345 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tg--ksRGfaFV~F~d~esA~kAl~~Lng~~i~---Gr~L~ 345 (964)
+.++|||+|||+++|+++|+++|++||+|.+|++ ++ +++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4689999999999999999999999999999976 22 78999999999999999999999998776 57788
Q ss_pred eeecCCCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCC
Q 002123 346 IHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNR 421 (964)
Q Consensus 346 V~~A~~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG 421 (964)
+.++.++.. .....++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|.+|++.|||
T Consensus 82 ~~~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 82 MKPADSEKN---NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEECGGGCC---SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred Ecccccccc---ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 887765443 2345679999999999999999999999999999998754 578999999999999999999999
Q ss_pred ceeC---CceEEEEecc
Q 002123 422 SDVA---GKQIKLEASR 435 (964)
Q Consensus 422 ~~I~---Gr~LkV~~A~ 435 (964)
..+. |++|+|.||.
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 8775 4999999984
No 19
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=7.4e-28 Score=243.40 Aligned_cols=162 Identities=15% Similarity=0.322 Sum_probs=144.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccC----C-------cEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccc
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQF----G-------DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKL 344 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~f----G-------~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L 344 (964)
..++|||+|||+++|+++|+++|++| | .|..+++ ++++|||||+|.+.++|++|+ .|+|..+.|++|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 46999999999999999999999999 5 6777777 788999999999999999999 799999999999
Q ss_pred eeeecCCCCCCC----------------CccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEE
Q 002123 345 DIHYSIPKDNPS----------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKF 403 (964)
Q Consensus 345 ~V~~A~~k~~~~----------------~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaF 403 (964)
.|.++..+.... ......++|||+|||..+++++|+++|++||.|.+|++..+ ++||||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 999987653221 11235579999999999999999999999999999998755 388999
Q ss_pred EeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCch
Q 002123 404 IEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (964)
Q Consensus 404 VeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~ 439 (964)
|+|.+.++|.+|++.|||..|+|++|+|.++.++..
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999999998653
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=6.5e-26 Score=242.29 Aligned_cols=156 Identities=24% Similarity=0.358 Sum_probs=142.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
...+.++|||+|||+++|+++|+++|++||.|..|++ .+++|||||+|.+.++|++|++.|+|..|.|+.|.|.++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~- 95 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH- 95 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc-
Confidence 4456789999999999999999999999999999998 67899999999999999999999999999999999999864
Q ss_pred CCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhC-CceeC--
Q 002123 353 DNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLN-RSDVA-- 425 (964)
Q Consensus 353 ~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LN-G~~I~-- 425 (964)
..+|||+|||..+++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+|++.|| +..+.
T Consensus 96 ---------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 166 (261)
T 3sde_A 96 ---------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTT 166 (261)
T ss_dssp ---------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSS
T ss_pred ---------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecC
Confidence 468999999999999999999999999999988643 57899999999999999999995 44554
Q ss_pred -CceEEEEeccCCch
Q 002123 426 -GKQIKLEASRPGGA 439 (964)
Q Consensus 426 -Gr~LkV~~A~~k~~ 439 (964)
+++|.|.++.+...
T Consensus 167 ~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 167 TPRPVIVEPMEQFDD 181 (261)
T ss_dssp SCCBCEEEECCCEES
T ss_pred CCceEEEeeccccCc
Confidence 99999999987643
No 21
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.82 E-value=2.2e-21 Score=201.09 Aligned_cols=164 Identities=13% Similarity=0.240 Sum_probs=126.0
Q ss_pred CCCccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCC--hhhhhccCCCCeeeeecCCChhhh
Q 002123 147 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSGVTDDMGHNFQANTVDDL 223 (964)
Q Consensus 147 sl~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpd--EdDL~sG~SkGfGFV~f~~t~eda 223 (964)
...+|||+||+. ++++.|.+. |+ .+|.|... ..|..++.++|||||+| .+.++|
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~--------------F~--------~~G~I~~v~i~~d~~tg~~~G~afV~F-~~~~~A 70 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEK--------------FS--------PAGPILSIRVCRDMITRRSLGYAYVNF-QQPADA 70 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHH--------------HG--------GGSCEEEEEEEECTTTCCEEEEEEEEE-SSHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHH--------------HH--------hhCCEEEEEEecccCCCCcccccccee-CCHHHH
Confidence 345799999998 888889888 83 34444431 12234788999999994 578887
Q ss_pred hhhHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCc
Q 002123 224 EDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD 303 (964)
Q Consensus 224 eei~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~ 303 (964)
+ +|+..++|..+.|. .+.+..... .........++|||+|||+++|+++|+++|++||.
T Consensus 71 ~--~Ai~~~~~~~~~g~-~i~~~~~~~------------------~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~ 129 (213)
T 4f02_A 71 E--RALDTMNFDVIKGK-PVRIMWSQR------------------DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 129 (213)
T ss_dssp H--HHHHHHTTCEETTE-ECEEEECCC------------------CTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred H--HHHHHhhhhhcCCc-ccccccccc------------------cccccccccccceECCcccccHHHHHHHHHhhcCC
Confidence 8 89999999988733 221111000 00011224578999999999999999999999999
Q ss_pred EEEEEe---cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCC
Q 002123 304 IRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (964)
Q Consensus 304 I~svki---tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~ 354 (964)
|..|++ .+.++|||||+|.+.++|++|++.|||..|.|++|.|.++.++.+
T Consensus 130 i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 130 ILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp EEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHHH
T ss_pred eEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCcc
Confidence 999986 456899999999999999999999999999999999999987643
No 22
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.81 E-value=2.4e-20 Score=188.27 Aligned_cols=178 Identities=13% Similarity=0.152 Sum_probs=127.4
Q ss_pred CccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCC-------ChhhhhccCCCCeeeeecCCCh
Q 002123 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP-------DEDDLFSGVTDDMGHNFQANTV 220 (964)
Q Consensus 149 ~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILp-------dEdDL~sG~SkGfGFV~f~~t~ 220 (964)
.+|||+||+. ++.+.|.+. | ..+|.|.. .-.++..+.++|||||+|. +.
T Consensus 5 ~~l~V~nLp~~~te~~l~~~--------------F--------~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~-~~ 61 (198)
T 2yh0_A 5 RRLYVGNIPFGITEEAMMDF--------------F--------NAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFR-SV 61 (198)
T ss_dssp CEEEEESCCTTCCHHHHHHH--------------H--------HHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEES-CS
T ss_pred eEEEEcCCCCCCCHHHHHHH--------------H--------HHHHhhcccccCCCCceEEeEecCCCCEEEEEeC-CH
Confidence 5799999998 888888888 7 33321111 1123345778999999955 67
Q ss_pred hhhhhhHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCc-CCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhc
Q 002123 221 DDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSV-VGEHPYGEHPSRTLFVRNINSNVEDSELKALFE 299 (964)
Q Consensus 221 edaeei~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~-~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs 299 (964)
++|+ +|+ .++|..|. +..+.+........... ......... .........+.++|||+|||.++++++|+++|+
T Consensus 62 ~~A~--~Al-~l~g~~~~-g~~i~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 136 (198)
T 2yh0_A 62 DETT--QAM-AFDGIIFQ-GQSLKIRRPHDYQPLPG-MSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLT 136 (198)
T ss_dssp HHHH--HHG-GGTTEEET-TEEEEEECCCCCCCCCC-SSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHH
T ss_pred HHHH--HHH-HhcCCEEc-CceEEEeCCCCCCCCCC-CcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 7767 788 79999998 44444432221100000 000000000 001122346779999999999999999999999
Q ss_pred cCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCC
Q 002123 300 QFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (964)
Q Consensus 300 ~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~ 354 (964)
+||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|.|.++.++..
T Consensus 137 ~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 137 SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp TBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred HcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999999976 567899999999999999999999999999999999999987653
No 23
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.81 E-value=1.4e-20 Score=187.04 Aligned_cols=160 Identities=18% Similarity=0.254 Sum_probs=124.7
Q ss_pred CCccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCC-ChhhhhccCCCCeeeeecCCChhhhhh
Q 002123 148 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP-DEDDLFSGVTDDMGHNFQANTVDDLED 225 (964)
Q Consensus 148 l~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILp-dEdDL~sG~SkGfGFV~f~~t~edaee 225 (964)
-..|||+||+. ++.+.|.+. |.. +|.+.. .-.+..++.++|||||+| .+.++|+
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~--------------f~~--------~g~~~~~~~~~~~~~~~~g~afV~f-~~~~~a~- 68 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVA--------------ISE--------LFAKNDLAVVDVRTGTNRKFGYVDF-ESAEDLE- 68 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHH--------------HHH--------HHHHHTCCCCEEEEETTTTEEEEEE-SSHHHHH-
T ss_pred CcEEEEeCCCCCCCHHHHHHH--------------HHH--------hCCcceEEEEECCCCccccEEEEEE-CCHHHHH-
Confidence 45799999998 888788777 622 332222 112234788999999995 5777777
Q ss_pred hHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEE
Q 002123 226 FDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIR 305 (964)
Q Consensus 226 i~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~ 305 (964)
+|+ .++|..+. ++.+.+..... .......+.++|||+|||.++|+++|+++|++||.|.
T Consensus 69 -~A~-~l~g~~~~-g~~l~v~~~~~------------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~ 127 (175)
T 1fje_B 69 -KAL-ELTGLKVF-GNEIKLEKPKG------------------RDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIR 127 (175)
T ss_dssp -HHH-HGGGEEET-TEEEEEECCCC------------------SSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEE
T ss_pred -HHH-hcCCCEeC-CeEEEEecCCC------------------ccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEE
Confidence 788 49999998 44333322111 0112345679999999999999999999999999999
Q ss_pred EEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 306 TIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 306 svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
.+..+++++|||||+|.+.++|.+|++.|+|..|.|++|.|.|+.++
T Consensus 128 ~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 128 LVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred EecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 99667899999999999999999999999999999999999999876
No 24
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.81 E-value=7.5e-20 Score=179.65 Aligned_cols=127 Identities=20% Similarity=0.273 Sum_probs=114.5
Q ss_pred CCccceEEEEeCCHHHHHHHHHHc-cCCccccccceeeecCCCC------------CCCCccCCcceEEEeccCCCCcHH
Q 002123 311 CKHRGFVMISYYDIRAARNAMKAL-QNKPLRRRKLDIHYSIPKD------------NPSEKDANQGTLVVFNLDSSVSTE 377 (964)
Q Consensus 311 gksRGfaFV~F~d~esA~kAl~~L-ng~~i~Gr~L~V~~A~~k~------------~~~~~~~~~~tLfV~NLp~~vTee 377 (964)
.+.+|+++|+|.+.++|++|++.+ ||..+.| .+.+.++..+. .........++|||+|||..++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 457999999999999999999999 9999999 99999886531 112334456899999999999999
Q ss_pred HHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCc
Q 002123 378 ELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (964)
Q Consensus 378 dLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~ 438 (964)
+|+++|++||.|.+|+++.+++|||||+|.+.++|.+|++.|||..|.|++|+|.+++++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999999899999999999999999999999999999999999998753
No 25
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.2e-20 Score=181.25 Aligned_cols=158 Identities=20% Similarity=0.284 Sum_probs=122.1
Q ss_pred ccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhHH
Q 002123 150 DIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFDL 228 (964)
Q Consensus 150 nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpdEdDL~sG~SkGfGFV~f~~t~edaeei~a 228 (964)
.|||+||+. ++.+.|.+. |+...++..-.+ ..+. .+.++|||||+| .+.++|+ +|
T Consensus 2 ~l~V~nlp~~~t~~~l~~~--------------f~~~G~i~~v~i---~~~~----~~~~~g~afV~f-~~~~~a~--~A 57 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQY--------------FQVGGPIANIKI---MIDK----NNKNVNYAFVEY-HQSHDAN--IA 57 (166)
T ss_dssp EEEEEEEETTCCHHHHHHH--------------HGGGSCEEEEEE---ECCC----C-CCEEEEEEEE-SSHHHHH--HH
T ss_pred EEEECCCCCcCCHHHHHHH--------------HHhcCCeEEEEE---EECC----CCCCCCEEEEEe-CCHHHHH--HH
Confidence 589999987 888888888 743333321111 1132 466899999995 4777777 79
Q ss_pred HhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEE
Q 002123 229 FSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY 308 (964)
Q Consensus 229 i~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svk 308 (964)
+..++|..+. +..+.+..... .......+.++|||+|||.++|+++|+++|++||.|..++
T Consensus 58 ~~~l~~~~~~-g~~i~v~~~~~------------------~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~ 118 (166)
T 3md3_A 58 LQTLNGKQIE-NNIVKINWAFQ------------------SQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGH 118 (166)
T ss_dssp HHHHTTCEET-TEECEEEECCC------------------CCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEE
T ss_pred HHHcCCCccC-CCeeEEEEcCC------------------CCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEE
Confidence 9999999997 43332221110 1112445678999999999999999999999999999997
Q ss_pred e-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC
Q 002123 309 T-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 309 i-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
+ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.||.
T Consensus 119 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 119 VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 6 57889999999999999999999999999999999999985
No 26
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.80 E-value=2.3e-20 Score=188.20 Aligned_cols=167 Identities=19% Similarity=0.338 Sum_probs=119.4
Q ss_pred CCccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCC--hhhhhccCCCCeeeeecCCChhhhh
Q 002123 148 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSGVTDDMGHNFQANTVDDLE 224 (964)
Q Consensus 148 l~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpd--EdDL~sG~SkGfGFV~f~~t~edae 224 (964)
..+|||+||+. ++.+.|.+. |.. +|.|... ..+..+|.++|||||+|. +.++|+
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~--------------F~~--------~G~i~~v~i~~~~~~g~~~g~afV~f~-~~~~A~ 69 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSH--------------FEQ--------WGTLTDCVVMRDPNTKRSRGFGFVTYA-TVEEVD 69 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHH--------------HGG--------GSCEEEEEEEECTTTCCEEEEEEEEES-SHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHH--------------HHh--------CCCEEEEEEEEcCCCCCccceEEEEeC-CHHHHH
Confidence 45799999997 888888888 733 4444330 112236789999999954 777777
Q ss_pred hhHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcE
Q 002123 225 DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDI 304 (964)
Q Consensus 225 ei~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I 304 (964)
+|+.. +|..+. +..+.+..... ......+....+.++|||+|||.++|+++|+++|++||.|
T Consensus 70 --~A~~~-~~~~~~-g~~l~v~~~~~--------------~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i 131 (196)
T 1l3k_A 70 --AAMNA-RPHKVD-GRVVEPKRAVS--------------REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131 (196)
T ss_dssp --HHHHT-CSCEET-TEECEEEECCC-------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCE
T ss_pred --HHHhc-CCCEEC-CEEeeeecccC--------------cccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCe
Confidence 77766 778887 33333322111 0001112234466999999999999999999999999999
Q ss_pred EEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCCCC
Q 002123 305 RTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPS 356 (964)
Q Consensus 305 ~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~~ 356 (964)
..|++ +++++|||||+|.+.++|++|++. ++..|.|+.|.|.++.++.+..
T Consensus 132 ~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC------
T ss_pred EEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 99976 577899999999999999999985 8999999999999999887653
No 27
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.80 E-value=6.5e-20 Score=180.08 Aligned_cols=156 Identities=17% Similarity=0.241 Sum_probs=122.8
Q ss_pred CCccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCC--ChhhhhccCCCCeeeeecCCChhhhh
Q 002123 148 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP--DEDDLFSGVTDDMGHNFQANTVDDLE 224 (964)
Q Consensus 148 l~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILp--dEdDL~sG~SkGfGFV~f~~t~edae 224 (964)
-..||++||+. ++.+.|.+. |+ .+|.|.. -..+..++.++|||||+| .+.++|+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~--------------f~--------~~G~i~~v~i~~~~~~~~~~g~afV~f-~~~~~A~ 59 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYAL--------------FR--------AIGPINTCRIMRDYKTGYSYGYAFVDF-TSEMDSQ 59 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHH--------------HH--------TTSCEEEEECCEETTTTEECSEEEEEE-SSHHHHH
T ss_pred ccEEEEeCCCCCCCHHHHHHH--------------HH--------hcCCeeEEEEEEeCCCCccceEEEEEE-CCHHHHH
Confidence 35799999997 888888888 73 3444333 112223678999999995 5788878
Q ss_pred hhHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcE
Q 002123 225 DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDI 304 (964)
Q Consensus 225 ei~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I 304 (964)
+|+..++|..+. +..+.+.... ......+.++|||+|||.++++++|+++|++||.|
T Consensus 60 --~a~~~l~~~~~~-g~~l~v~~~~--------------------~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i 116 (168)
T 1b7f_A 60 --RAIKVLNGITVR-NKRLKVSYAR--------------------PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSI 116 (168)
T ss_dssp --HHHHHHTTCEET-TEECEEEECC--------------------CCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCE
T ss_pred --HHHHhcCCCEeC-CcEEEEEecC--------------------CCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcE
Confidence 899889999997 4333322111 01123467899999999999999999999999999
Q ss_pred EEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccc--ccceeeec
Q 002123 305 RTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYS 349 (964)
Q Consensus 305 ~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~G--r~L~V~~A 349 (964)
..+++ +++++|||||+|.+.++|.+|++.|+|..+.| ++|.|.||
T Consensus 117 ~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 117 VQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99976 57789999999999999999999999999988 99999886
No 28
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.79 E-value=2.2e-20 Score=191.17 Aligned_cols=174 Identities=13% Similarity=0.255 Sum_probs=126.2
Q ss_pred CccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 002123 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 227 (964)
Q Consensus 149 ~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpdEdDL~sG~SkGfGFV~f~~t~edaeei~ 227 (964)
.+|||+||+. ++.+.|.+. |+...++....+ +.+. .++.++|||||+| .+.++|+ +
T Consensus 29 ~~l~V~nLp~~~t~~~l~~~--------------f~~~G~i~~v~i---~~~~---~~g~~~g~afV~f-~~~~~A~--~ 85 (216)
T 2qfj_A 29 SRVYVGSIYYELGEDTIRQA--------------FAPFGPIKSIDM---SWDS---VTMKHKGFAFVEY-EVPEAAQ--L 85 (216)
T ss_dssp TEEEEECCCTTCCHHHHHHH--------------HGGGSCEEEEEE---CCC----CC-CCCSEEEEEE-SSHHHHH--H
T ss_pred CEEEEECCCCCCCHHHHHHH--------------HHhCCCEEEEEE---eecC---CCCccCceEEEEe-CCHHHHH--H
Confidence 4699999997 888888888 744333322111 1122 3678999999995 5778778 8
Q ss_pred HHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEE
Q 002123 228 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI 307 (964)
Q Consensus 228 ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~sv 307 (964)
|+..++|..+. +..+.+....... ... .............++|||+|||.++|+++|+++|++||.|..|
T Consensus 86 A~~~l~~~~~~-g~~l~v~~~~~~~--------~~~-~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v 155 (216)
T 2qfj_A 86 ALEQMNSVMLG-GRNIKVGRPSNIG--------QAQ-PIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSA 155 (216)
T ss_dssp HHHHHSSCCCC--CCCEEECCSCCG--------GGH-HHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEE
T ss_pred HHHHccCCeeC-CeeEEEecCCCcc--------ccc-hhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEE
Confidence 99989999887 3333332211100 000 0000000123456899999999999999999999999999999
Q ss_pred Ee-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCCC
Q 002123 308 YT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP 355 (964)
Q Consensus 308 ki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~ 355 (964)
++ +++++|||||+|.+.++|.+|++.|+|..|.|+.|.|.|+.++...
T Consensus 156 ~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 156 TLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred EEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 86 5678999999999999999999999999999999999999887544
No 29
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.79 E-value=6.9e-20 Score=180.89 Aligned_cols=155 Identities=15% Similarity=0.230 Sum_probs=120.7
Q ss_pred CccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCC-------ChhhhhccCCCCeeeeecCCCh
Q 002123 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP-------DEDDLFSGVTDDMGHNFQANTV 220 (964)
Q Consensus 149 ~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILp-------dEdDL~sG~SkGfGFV~f~~t~ 220 (964)
.+|||+||+. ++.+.|.+. | +.+|.+.- .-.++..+.++|||||+| .+.
T Consensus 5 ~~l~V~nLp~~~t~~~l~~~--------------F--------~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f-~~~ 61 (172)
T 2g4b_A 5 RRLYVGNIPFGITEEAMMDF--------------F--------NAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEF-RSV 61 (172)
T ss_dssp GEEEEESCCTTCCHHHHHHH--------------H--------HHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEE-SSH
T ss_pred cEEEEcCCCcccCHHHHHHH--------------H--------HHHhhhcccccCCCCceeeeEecCCCCEEEEEe-CCH
Confidence 4799999998 888888888 7 33421111 112334566899999995 477
Q ss_pred hhhhhhHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcc
Q 002123 221 DDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQ 300 (964)
Q Consensus 221 edaeei~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~ 300 (964)
++|+ +|+ .++|..+. ++.+.+.... ........++|||+|||.++|+++|+++|++
T Consensus 62 ~~A~--~A~-~~~~~~~~-g~~i~v~~~~--------------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~ 117 (172)
T 2g4b_A 62 DETT--QAM-AFDGIIFQ-GQSLKIRRPH--------------------DYQPLPGAHKLFIGGLPNYLNDDQVKELLTS 117 (172)
T ss_dssp HHHH--HHG-GGTTCEET-TEECEEECCS--------------------SCCCCTTTTCEEEECCCTTCCHHHHHHHHHT
T ss_pred HHHH--HHH-HhCCcEec-CceeeecCCc--------------------ccCCCCCCCEEEEEcCCCcCCHHHHHHHHHh
Confidence 7777 788 89999998 4333222110 0112234789999999999999999999999
Q ss_pred CCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC
Q 002123 301 FGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 301 fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
||+|..+++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.||.
T Consensus 118 ~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 118 FGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999986 67789999999999999999999999999999999999873
No 30
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=1.1e-18 Score=172.20 Aligned_cols=131 Identities=18% Similarity=0.269 Sum_probs=105.4
Q ss_pred cCCccceEEEEeCCHHHHHHHHHHccCCccc-------cccceeeecCCCCC--CCCccCCcceEEEeccCCCCcHHHHH
Q 002123 310 ACKHRGFVMISYYDIRAARNAMKALQNKPLR-------RRKLDIHYSIPKDN--PSEKDANQGTLVVFNLDSSVSTEELH 380 (964)
Q Consensus 310 tgksRGfaFV~F~d~esA~kAl~~Lng~~i~-------Gr~L~V~~A~~k~~--~~~~~~~~~tLfV~NLp~~vTeedLr 380 (964)
..+++|||||+|.+.++|++|++.+++.... +............. .........+|||+|||..+++++|+
T Consensus 9 ~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 88 (158)
T 2kn4_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLR 88 (158)
T ss_dssp CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHH
T ss_pred CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHH
Confidence 4568999999999999999999988764322 22223222222211 12233456899999999999999999
Q ss_pred HHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCchh
Q 002123 381 QIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGAR 440 (964)
Q Consensus 381 elFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~r 440 (964)
++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..|+|++|+|.+++++..+
T Consensus 89 ~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 89 RVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp HHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred HHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 99999999999998653 6899999999999999999999999999999999999986543
No 31
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.78 E-value=3.3e-20 Score=182.34 Aligned_cols=155 Identities=17% Similarity=0.285 Sum_probs=117.1
Q ss_pred CccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCC--ChhhhhccCCCCeeeeecCCChhhhhh
Q 002123 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP--DEDDLFSGVTDDMGHNFQANTVDDLED 225 (964)
Q Consensus 149 ~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILp--dEdDL~sG~SkGfGFV~f~~t~edaee 225 (964)
.+|||+||+. ++.+.|.+. |+. +|.|.. -..+..+|.++|||||+|. +.++|+
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~--------------F~~--------~G~i~~v~i~~~~~~g~~~g~afV~f~-~~~~a~- 59 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREY--------------FGK--------YGTVTDLKIMKDPATGRSRGFGFLSFE-KPSSVD- 59 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHH--------------HTT--------TCCEEEEECCCCTTTSSCCSCEEEEES-STHHHH-
T ss_pred cEEEEeCCCCCCCHHHHHHH--------------HHh--------CCCEEEEEEEECCCCCCccceEEEEEc-cHHHHH-
Confidence 4799999997 888888888 733 343333 0112237889999999955 666667
Q ss_pred hHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEE
Q 002123 226 FDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIR 305 (964)
Q Consensus 226 i~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~ 305 (964)
+|+.. +..+. +..+.+..... .....+.++|||+|||.++|+++|+++|++||.|.
T Consensus 60 -~A~~~--~~~~~-g~~i~v~~~~~--------------------~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 115 (167)
T 2cjk_A 60 -EVVKT--QHILD-GKVIDPKRAIP--------------------RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTII 115 (167)
T ss_dssp -HHHHS--CCEET-TEECCCEECCC--------------------HHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCS
T ss_pred -HHHhc--ccccC-CeEcccccccc--------------------hhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEE
Confidence 67774 34555 22221111100 01123467999999999999999999999999999
Q ss_pred EEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 306 TIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 306 svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
.+++ +++++|||||+|.+.++|++|++ +++..+.|++|.|.++.++
T Consensus 116 ~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 116 DAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred EEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9986 57889999999999999999998 9999999999999999876
No 32
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.78 E-value=1.3e-19 Score=177.23 Aligned_cols=155 Identities=19% Similarity=0.268 Sum_probs=119.9
Q ss_pred CccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCC--hhhhhccCCCCeeeeecCCChhhhhh
Q 002123 149 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSGVTDDMGHNFQANTVDDLED 225 (964)
Q Consensus 149 ~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpd--EdDL~sG~SkGfGFV~f~~t~edaee 225 (964)
..||++||+. ++.+.|.+. |+. +|.|... ..+..+|.++|||||+| .+.++|+
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~--------------f~~--------~G~i~~v~~~~~~~~~~~~g~afV~f-~~~~~A~- 58 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSL--------------FGS--------IGEIESCKLVRDKITGQSLGYGFVNY-IDPKDAE- 58 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHH--------------HHT--------TSCEEEEEEEECTTTCCEEEEEEEEE-SSHHHHH-
T ss_pred ceEEEcCCCCCCCHHHHHHH--------------HHh--------cCCeEEEEEEeCCCCCcceeEEEEEE-CCHHHHH-
Confidence 5799999997 888888887 733 3433330 11223678899999995 5788878
Q ss_pred hHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEE
Q 002123 226 FDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIR 305 (964)
Q Consensus 226 i~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~ 305 (964)
+|+..++|..+. +..+.+.... ........++|||+|||.++++++|+++|++||.|.
T Consensus 59 -~a~~~l~~~~~~-g~~l~v~~~~--------------------~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~ 116 (167)
T 1fxl_A 59 -KAINTLNGLRLQ-TKTIKVSYAR--------------------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 116 (167)
T ss_dssp -HHHHHHTTCEET-TEECEEEECC--------------------CCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred -HHHHHcCCCccC-CceEEEEecC--------------------CCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEe
Confidence 899989999997 4333221110 011233568999999999999999999999999999
Q ss_pred EEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccc--ceeeec
Q 002123 306 TIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK--LDIHYS 349 (964)
Q Consensus 306 svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~--L~V~~A 349 (964)
.+++ +++++|||||+|.+.++|++|++.|+|..+.|+. |.|.||
T Consensus 117 ~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 117 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9976 5678999999999999999999999999999975 777775
No 33
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.78 E-value=1e-19 Score=179.58 Aligned_cols=161 Identities=14% Similarity=0.180 Sum_probs=118.6
Q ss_pred CCccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCC--hhhhhcc--CCCCeeeeecCCChhh
Q 002123 148 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSG--VTDDMGHNFQANTVDD 222 (964)
Q Consensus 148 l~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpd--EdDL~sG--~SkGfGFV~f~~t~ed 222 (964)
-.+|||+||+. ++.+.|.+. |+. +|.|... ..+..++ .++|||||+| .+.++
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~--------------F~~--------~G~i~~v~i~~~~~~~~~~~~g~afV~f-~~~~~ 59 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLREL--------------FEQ--------YGAVYEINVLRDRSQNPPQSKGCCFVTF-YTRKA 59 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHH--------------HHT--------TSCEEEEEEEEECSSSSCEEEEEEEEEE-SSHHH
T ss_pred ceEEEEeCCCCCCCHHHHHHH--------------HHh--------CCCEEEEEEEecCCCCCCCcceEEEEEE-CCHHH
Confidence 35799999998 888888888 733 4433330 0111133 6899999995 57777
Q ss_pred hhhhHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCC
Q 002123 223 LEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFG 302 (964)
Q Consensus 223 aeei~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG 302 (964)
|+ +|+..++|..+.+... +.+. ... ...........++|||+|||.++|+++|+++|++||
T Consensus 60 A~--~A~~~l~~~~~~~~~~----~~~~----------~~~---~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G 120 (175)
T 3nmr_A 60 AL--EAQNALHNMKVLPGMH----HPIQ----------MKP---ADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFG 120 (175)
T ss_dssp HH--HHHHHHTTTCCCTTCS----SCCE----------EEE---CGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred HH--HHHHHhcCcEEccCCc----cceE----------Ecc---ccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCC
Confidence 77 7898888877652221 1000 000 000112334678999999999999999999999999
Q ss_pred cEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccc---cccceeeecC
Q 002123 303 DIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLR---RRKLDIHYSI 350 (964)
Q Consensus 303 ~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~---Gr~L~V~~A~ 350 (964)
.|..+++ +++++|||||+|.+.++|++|++.|+|..+. +++|.|.||.
T Consensus 121 ~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 121 QIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999986 5678999999999999999999999998776 4999999973
No 34
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=4.6e-19 Score=167.20 Aligned_cols=103 Identities=16% Similarity=0.315 Sum_probs=73.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe---cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~svki---tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
..++|||+|||+++|+++|+++|++||.|.+|++ .+.+||||||+|.+.++|++||+.|+|+.|.|++|.|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 3578999999999999999999999999999986 4567999999999999999999999999999999999999877
Q ss_pred CCCCC----ccCCcceEEEeccCCCCcHHH
Q 002123 353 DNPSE----KDANQGTLVVFNLDSSVSTEE 378 (964)
Q Consensus 353 ~~~~~----~~~~~~tLfV~NLp~~vTeed 378 (964)
..+.. ......+|||+|||+++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 65432 223446899999999999863
No 35
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.75 E-value=1.8e-18 Score=185.33 Aligned_cols=77 Identities=19% Similarity=0.343 Sum_probs=71.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccc-cccceeeecC
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR-RRKLDIHYSI 350 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~-Gr~L~V~~A~ 350 (964)
..+.++|||+|||.++|+++|+++|++||.|..|++....+|||||+|.+.++|.+|++.|+|..|. |+.|.|.|+.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 3467899999999999999999999999999999985555799999999999999999999999999 9999999985
No 36
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.75 E-value=1.4e-18 Score=180.26 Aligned_cols=172 Identities=8% Similarity=0.064 Sum_probs=119.6
Q ss_pred CccccccCC-C-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhh
Q 002123 149 SDIFTRKMK-L-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDF 226 (964)
Q Consensus 149 ~nlFv~nL~-~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpdEdDL~sG~SkGfGFV~f~~t~edaeei 226 (964)
..|||+||+ + ++.+.|++. | ..+|+|+... +.. -++|||||+| .+.++|+
T Consensus 5 ~~l~V~nL~~~~~~~~~L~~~--------------F--------~~~G~v~~v~--i~~-~~~g~afV~f-~~~~~A~-- 56 (205)
T 3tyt_A 5 PVLMVYGLDQSKMNCDRVFNV--------------F--------CLYGNVEKVK--FMK-SKPGAAMVEM-ADGYAVD-- 56 (205)
T ss_dssp SEEEEECCCTTTCCHHHHHHH--------------H--------TTTSCEEEEE--ECT-TSTTCEEEEE-SSHHHHH--
T ss_pred CEEEEeCCCcccCCHHHHHHH--------------H--------HhcCCeEEEE--Eec-CCCCEEEEEE-CCHHHHH--
Confidence 579999999 6 899899988 8 5556554411 000 1589999995 5777778
Q ss_pred HHHhccCCeeecCCcchhhhcccccccCCC------------CCCCCC-CCCcC----CCCCCCCCCCcEEEEecCCCCC
Q 002123 227 DLFSSGGGMELEGDDRLFAVQKNSDFVGGV------------SNQGVS-AGSVV----GEHPYGEHPSRTLFVRNINSNV 289 (964)
Q Consensus 227 ~ai~s~nG~eLegd~~v~vg~~ls~l~~~~------------~n~~~~-~~~~~----~e~~~~e~~srtLFVgNLP~~v 289 (964)
+|+..+||.+|.| +.+.|........... +.+... ..... ........++++|||+|||+++
T Consensus 57 ~Ai~~lng~~~~g-~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~ 135 (205)
T 3tyt_A 57 RAITHLNNNFMFG-QKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEV 135 (205)
T ss_dssp HHHHHHTTCEETT-EECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTC
T ss_pred HHHHHhCCCEECC-ceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCC
Confidence 8999999999984 4444433211100000 000000 00000 0000123467899999999999
Q ss_pred CHHHHHHhhccCCcE--EEEEe---cCCccceEEEEeCCHHHHHHHHHHccCCccccc----cceeeec
Q 002123 290 EDSELKALFEQFGDI--RTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRR----KLDIHYS 349 (964)
Q Consensus 290 TEedLrelFs~fG~I--~svki---tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr----~L~V~~A 349 (964)
|+++|+++|++||.| .++++ .++.+|||||+|.+.++|.+||..|||..|.|+ ++.|+++
T Consensus 136 t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 136 TEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 999999999999999 78876 245679999999999999999999999999886 5777665
No 37
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.72 E-value=1.7e-17 Score=173.61 Aligned_cols=178 Identities=19% Similarity=0.183 Sum_probs=124.9
Q ss_pred cCCCccccccCCC--CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhh
Q 002123 146 SSLSDIFTRKMKL--SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDL 223 (964)
Q Consensus 146 Ssl~nlFv~nL~~--idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpdEdDL~sG~SkGfGFV~f~~t~eda 223 (964)
..-..|||+||+. ++.+.|.+. | ..+|.|.... +... .+|||||+| .+.++|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~--------------F--------~~~G~i~~v~--i~~~-~~g~afV~F-~~~~~A 85 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFIL--------------F--------GVYGDVQRVK--ILFN-KKENALVQM-ADGNQA 85 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHH--------------H--------HHHTCEEEEE--ECCT-TSCCEEEEE-SCHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHH--------------H--------HhCCCeEEEE--EEEC-CCCEEEEEE-CCHHHH
Confidence 3456899999975 788788877 7 4445443310 0000 278999995 577777
Q ss_pred hhhHHHhccCCeeecCCcchhhhccccccc---CCCCC-------CCCCCC-CcC----CCCCCCCCCCcEEEEecCCCC
Q 002123 224 EDFDLFSSGGGMELEGDDRLFAVQKNSDFV---GGVSN-------QGVSAG-SVV----GEHPYGEHPSRTLFVRNINSN 288 (964)
Q Consensus 224 eei~ai~s~nG~eLegd~~v~vg~~ls~l~---~~~~n-------~~~~~~-~~~----~e~~~~e~~srtLFVgNLP~~ 288 (964)
+ +|+..++|..+.| +.+.+........ +.... ...... ... ........+.++|||+|||.+
T Consensus 86 ~--~Ai~~l~g~~~~g-~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~ 162 (229)
T 2adc_A 86 Q--LAMSHLNGHKLHG-KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPS 162 (229)
T ss_dssp H--HHHHHHTTCBCSS-SBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTT
T ss_pred H--HHHHHhCCCeECC-eEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCcc
Confidence 8 8999999999974 4444432221100 00000 000000 000 000112345799999999999
Q ss_pred CCHHHHHHhhccCC-cEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccc-cccceeeecCCC
Q 002123 289 VEDSELKALFEQFG-DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR-RRKLDIHYSIPK 352 (964)
Q Consensus 289 vTEedLrelFs~fG-~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~-Gr~L~V~~A~~k 352 (964)
+++++|+++|++|| .|..|++..+.+|||||+|.+.++|++|++.|+|..+. |++|.|.|+.++
T Consensus 163 ~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 163 VSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99999999999999 99999986668999999999999999999999999999 999999999764
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.71 E-value=1.4e-17 Score=156.97 Aligned_cols=105 Identities=17% Similarity=0.233 Sum_probs=73.2
Q ss_pred cceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC---CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCc
Q 002123 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (964)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~---skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~ 438 (964)
.++|||+|||.++++++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|++|++.|||..|.|++|+|.+++++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 568999999999999999999999999999998754 57899999999999999999999999999999999999876
Q ss_pred hhhhcchhhhhcccCccc-CCCCCCCChhh
Q 002123 439 ARRFMVQSEQEQDDLNLC-QIPFDDLSSGQ 467 (964)
Q Consensus 439 ~r~~~qq~eq~q~E~nL~-kNLp~s~tee~ 467 (964)
.+.. +.........++| +||+.++|++-
T Consensus 85 ~~~~-~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 85 EREA-ELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp C-----------------------------
T ss_pred cccc-ccccccCCCCceEeCCCCCCccccc
Confidence 5541 1122333345788 99999998763
No 39
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.71 E-value=2.5e-17 Score=167.23 Aligned_cols=175 Identities=19% Similarity=0.201 Sum_probs=123.3
Q ss_pred CccccccCCC--CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhh
Q 002123 149 SDIFTRKMKL--SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDF 226 (964)
Q Consensus 149 ~nlFv~nL~~--idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpdEdDL~sG~SkGfGFV~f~~t~edaeei 226 (964)
..|||+||+. ++.+.|.+. | ..+|.|.... +... .+|||||+|. +.++|+
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~--------------F--------~~~G~i~~v~--i~~~-~~g~afV~f~-~~~~a~-- 55 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFIL--------------F--------GVYGDVQRVK--ILFN-KKENALVQMA-DGNQAQ-- 55 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHH--------------H--------HTTCCCSEEE--CSTT-CSSCCEEECT-TTHHHH--
T ss_pred cEEEEeCCCcccCCHHHHHHH--------------H--------HhcCCEEEEE--EEeC-CCCEEEEEEC-CHHHHH--
Confidence 5799999975 777788877 7 4456554411 0000 2789999954 777777
Q ss_pred HHHhccCCeeecCCcchhhhccccccc---CCCCC-------CCCCC-CCc----CCCCCCCCCCCcEEEEecCCCCCCH
Q 002123 227 DLFSSGGGMELEGDDRLFAVQKNSDFV---GGVSN-------QGVSA-GSV----VGEHPYGEHPSRTLFVRNINSNVED 291 (964)
Q Consensus 227 ~ai~s~nG~eLegd~~v~vg~~ls~l~---~~~~n-------~~~~~-~~~----~~e~~~~e~~srtLFVgNLP~~vTE 291 (964)
+|+..++|..+.| ..+.+........ +.... ..... ... .........+.++|||+|||.++++
T Consensus 56 ~A~~~l~~~~~~g-~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 134 (198)
T 1qm9_A 56 LAMSHLNGHKLHG-KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSE 134 (198)
T ss_dssp HHHHHHTTCCCSS-CCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCH
T ss_pred HHHHHhCCCeecC-eEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCH
Confidence 7998899998874 4444432221100 00000 00000 000 0001112346899999999999999
Q ss_pred HHHHHhhccCC-cEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccc-cccceeeecCCC
Q 002123 292 SELKALFEQFG-DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR-RRKLDIHYSIPK 352 (964)
Q Consensus 292 edLrelFs~fG-~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~-Gr~L~V~~A~~k 352 (964)
++|+++|++|| .|..|++....+|||||+|.+.++|.+|++.|+|..+. |++|.|.|+.++
T Consensus 135 ~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 135 EDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999999 99999986667999999999999999999999999999 999999999764
No 40
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.70 E-value=2.3e-17 Score=176.21 Aligned_cols=153 Identities=18% Similarity=0.164 Sum_probs=120.3
Q ss_pred cCCCccccccCCC-CCcccccccCcccccCCCCCCCCccccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhh
Q 002123 146 SSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLE 224 (964)
Q Consensus 146 Ssl~nlFv~nL~~-idn~~L~~~~~~~~~~~~~~eE~F~s~EEie~~~iGnILpdEdDL~sG~SkGfGFV~f~~t~edae 224 (964)
..-..|||+||+. ++.+.|.+. | ..+|.|... .-..++|||||. |.+.++|+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~--------------F--------~~~G~i~~v----~i~~~kg~afV~-f~~~~~A~ 72 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRL--------------F--------ERYGEPSEV----FINRDRGFGFIR-LESRTLAE 72 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHH--------------T--------GGGCCCSEE----EEETTTTEEEEE-CSSHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHH--------------H--------HhcCCEEEE----EEeCCCcEEEEE-ECCHHHHH
Confidence 3445799999997 888889888 8 444543331 123468999999 55788878
Q ss_pred hhHHHhccCCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcE
Q 002123 225 DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDI 304 (964)
Q Consensus 225 ei~ai~s~nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I 304 (964)
+|+..++|..+.| ..+.+.. ..+.++|||+|||.++|+++|+++|++||.|
T Consensus 73 --~A~~~l~g~~i~g-~~l~v~~--------------------------a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i 123 (261)
T 3sde_A 73 --IAKAELDGTILKS-RPLRIRF--------------------------ATHGAALTVKNLSPVVSNELLEQAFSQFGPV 123 (261)
T ss_dssp --HHHHHHTTCEETT-EECEEEE--------------------------CCCSSEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred --HHHHHcCCcEECC-ceeEeee--------------------------cccCCcccccCCCCCCCHHHHHHHHHhcCCe
Confidence 8999999999973 3322211 1135799999999999999999999999999
Q ss_pred EEEEe----cCCccceEEEEeCCHHHHHHHHHHccCC-ccc---cccceeeecCCCCC
Q 002123 305 RTIYT----ACKHRGFVMISYYDIRAARNAMKALQNK-PLR---RRKLDIHYSIPKDN 354 (964)
Q Consensus 305 ~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~-~i~---Gr~L~V~~A~~k~~ 354 (964)
..|++ +++++|||||+|.+.++|.+|++.|++. .+. +++|.|.++.+..+
T Consensus 124 ~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 124 EKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp EEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred EEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 99976 6789999999999999999999999554 444 89999999987543
No 41
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.68 E-value=2.2e-16 Score=155.65 Aligned_cols=83 Identities=25% Similarity=0.464 Sum_probs=76.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
.....++|||+|||+++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999986 67899999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 002123 348 YSIPKDNP 355 (964)
Q Consensus 348 ~A~~k~~~ 355 (964)
++.++..+
T Consensus 146 ~a~~~~~~ 153 (158)
T 2kn4_A 146 MARYGRPP 153 (158)
T ss_dssp EECCSSCC
T ss_pred ECCCCCCC
Confidence 99876544
No 42
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.66 E-value=1e-16 Score=150.16 Aligned_cols=103 Identities=26% Similarity=0.407 Sum_probs=93.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe--cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCC
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki--tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~ 351 (964)
..+.++|||+|||.++|+++|+++|++||.|..|++ .++++|||||+|.+.++|++|++.|+|..+.|+.|.|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 456799999999999999999999999999999987 577899999999999999999999999999999999999976
Q ss_pred CCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCc
Q 002123 352 KDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGE 388 (964)
Q Consensus 352 k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~ 388 (964)
+... ++++...++++|.++|++||.
T Consensus 85 ~~~~------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh------------hhhhHhHhHHHHHHHHHHhCC
Confidence 4322 567788899999999999985
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=145.73 Aligned_cols=77 Identities=22% Similarity=0.482 Sum_probs=72.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
...++|||+|||.++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|||..|.|++|+|.||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34689999999999999999999999999999976 5889999999999999999999999999999999999999
Q ss_pred CC
Q 002123 350 IP 351 (964)
Q Consensus 350 ~~ 351 (964)
.|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 44
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.65 E-value=2.5e-16 Score=154.49 Aligned_cols=138 Identities=17% Similarity=0.239 Sum_probs=103.5
Q ss_pred CCCCeeeeecCCChhhhhhhHHHhcc-CCeeecCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecC
Q 002123 207 VTDDMGHNFQANTVDDLEDFDLFSSG-GGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNI 285 (964)
Q Consensus 207 ~SkGfGFV~f~~t~edaeei~ai~s~-nG~eLegd~~v~vg~~ls~l~~~~~n~~~~~~~~~~e~~~~e~~srtLFVgNL 285 (964)
..+|+++|++ .+.++|+ +|+..+ +|.+++| .+.+........ ..................+.++|||+||
T Consensus 11 ~l~G~~~ve~-~~~~~A~--~a~~~~~ng~~~~G--~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~V~nl 81 (150)
T 2i2y_A 11 TLKGETTTEA-VDAATAE--KVFKQYANDNGVDG--EWTYDDATKTFT----VTEGSHHHHHHMHRDSCPLDCKVYVGNL 81 (150)
T ss_dssp SSCEEEEEEC-SSHHHHT--TTHHHHHHHHTCCC--EEEEETTTTEEE----EECSSSSCCCCSCSSSSTTSCEEEEESC
T ss_pred cccccceeee-cCHHHHH--HHHHHHhcCCCCCC--ceecccccCccc----cccccccccccccccCCCCCCEEEEeCC
Confidence 3678998884 4777777 788888 8888885 322221111000 0000000111122335567899999999
Q ss_pred CCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCC
Q 002123 286 NSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 353 (964)
Q Consensus 286 P~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~ 353 (964)
|+++|+++|+++|++||.|.+|++...++|||||+|.+.++|++|++.|+|..|.|++|.|.++.++.
T Consensus 82 ~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 82 GNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999999999966689999999999999999999999999999999999998753
No 45
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.62 E-value=8.6e-16 Score=141.53 Aligned_cols=76 Identities=26% Similarity=0.441 Sum_probs=71.0
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEecc
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (964)
..++|||+|||.++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++.|||..|+|++|+|.||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 3468999999999999999999999999999998643 57899999999999999999999999999999999998
Q ss_pred C
Q 002123 436 P 436 (964)
Q Consensus 436 ~ 436 (964)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 7
No 46
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.61 E-value=5.9e-16 Score=150.40 Aligned_cols=121 Identities=19% Similarity=0.319 Sum_probs=77.5
Q ss_pred ceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEe
Q 002123 315 GFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD 394 (964)
Q Consensus 315 GfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri 394 (964)
-++|++|.+...|..|++.++|....|+.- +.+..+ .......++|||+|||..+++++|+++|++||.|..|++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 79 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRP----PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI 79 (135)
T ss_dssp -------------------------------CCSCCS----CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCCC----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 368889999999999999999877666532 223222 234455689999999999999999999999999999998
Q ss_pred cCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCchh
Q 002123 395 TQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGAR 440 (964)
Q Consensus 395 ~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~r 440 (964)
..+ ++|||||+|.+.++|++|++.|||..|.|++|+|.+++++..+
T Consensus 80 ~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 80 PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 643 5889999999999999999999999999999999999976543
No 47
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=8.4e-16 Score=140.61 Aligned_cols=94 Identities=22% Similarity=0.364 Sum_probs=82.3
Q ss_pred cEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCCCCC
Q 002123 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSE 357 (964)
Q Consensus 278 rtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~~~ 357 (964)
++|||+|||.++|+++|+++|++||+|..|++...++|||||+|.+.++|++|++.|+|..+.|++|.|.++.++.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 58999999999999999999999999999988444899999999999999999999999999999999999987654322
Q ss_pred c------cCCcceEEEeccC
Q 002123 358 K------DANQGTLVVFNLD 371 (964)
Q Consensus 358 ~------~~~~~tLfV~NLp 371 (964)
. .....+|||+||+
T Consensus 81 ~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 81 FDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCCccccCCCceecCCCC
Confidence 1 1235689999997
No 48
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.60 E-value=4.6e-16 Score=140.99 Aligned_cols=79 Identities=22% Similarity=0.432 Sum_probs=71.9
Q ss_pred CcEEEEecCCCCCCHHHHHHhhccCC-cEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHcc-CCccccccceeeec
Q 002123 277 SRTLFVRNINSNVEDSELKALFEQFG-DIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQ-NKPLRRRKLDIHYS 349 (964)
Q Consensus 277 srtLFVgNLP~~vTEedLrelFs~fG-~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Ln-g~~i~Gr~L~V~~A 349 (964)
+++|||+|||+++||++|+++|++|| +|.+|++ ++++||||||+|.+.++|++|++.++ +..+.|++|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 8999875 58899999999999999999999874 56799999999999
Q ss_pred CCCCCC
Q 002123 350 IPKDNP 355 (964)
Q Consensus 350 ~~k~~~ 355 (964)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887654
No 49
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=141.95 Aligned_cols=79 Identities=19% Similarity=0.379 Sum_probs=74.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
..+.++|||+|||+++|+++|+++|++||+|.+|++ ++++||||||+|.+.++|++|++.|||+.|.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356799999999999999999999999999999986 588999999999999999999999999999999999999
Q ss_pred cCCC
Q 002123 349 SIPK 352 (964)
Q Consensus 349 A~~k 352 (964)
+..+
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 9654
No 50
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=5.1e-15 Score=135.15 Aligned_cols=83 Identities=14% Similarity=0.288 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
....+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35567899999999999999999999999999999987 47789999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 002123 348 YSIPKDN 354 (964)
Q Consensus 348 ~A~~k~~ 354 (964)
++.++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9987654
No 51
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4.9e-15 Score=134.83 Aligned_cols=82 Identities=23% Similarity=0.389 Sum_probs=76.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
..+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456799999999999999999999999999999987 678899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 002123 349 SIPKDNP 355 (964)
Q Consensus 349 A~~k~~~ 355 (964)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9887654
No 52
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=7.9e-15 Score=134.56 Aligned_cols=85 Identities=18% Similarity=0.394 Sum_probs=78.1
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe---cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki---tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
....+.++|||+|||+++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34567899999999999999999999999999999987 468899999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 002123 349 SIPKDNPS 356 (964)
Q Consensus 349 A~~k~~~~ 356 (964)
+.++..+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 98876654
No 53
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.4e-15 Score=135.07 Aligned_cols=84 Identities=17% Similarity=0.299 Sum_probs=77.6
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
....+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 45567899999999999999999999999999999986 6779999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 002123 347 HYSIPKDNP 355 (964)
Q Consensus 347 ~~A~~k~~~ 355 (964)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999876543
No 54
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.59 E-value=8.3e-15 Score=134.73 Aligned_cols=83 Identities=19% Similarity=0.330 Sum_probs=76.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCcccc---ccce
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR---RKLD 345 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~G---r~L~ 345 (964)
...+.++|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.| ++|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 4456899999999999999999999999999999986 56779999999999999999999999999998 9999
Q ss_pred eeecCCCCCC
Q 002123 346 IHYSIPKDNP 355 (964)
Q Consensus 346 V~~A~~k~~~ 355 (964)
|.++.++..+
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999887654
No 55
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=9.9e-15 Score=132.99 Aligned_cols=83 Identities=24% Similarity=0.488 Sum_probs=76.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
...+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++ |++..|.|++|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 4457799999999999999999999999999999987 57789999999999999999998 99999999999999
Q ss_pred ecCCCCCCC
Q 002123 348 YSIPKDNPS 356 (964)
Q Consensus 348 ~A~~k~~~~ 356 (964)
++.++....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2dgs_A 85 RAEPRDSKS 93 (99)
T ss_dssp ECCCCCCCC
T ss_pred ECCCCcccC
Confidence 998876543
No 56
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=6.8e-15 Score=132.69 Aligned_cols=81 Identities=25% Similarity=0.445 Sum_probs=75.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
.+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46799999999999999999999999999999986 4778999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 002123 350 IPKDNP 355 (964)
Q Consensus 350 ~~k~~~ 355 (964)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 887654
No 57
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.58 E-value=4.6e-15 Score=130.33 Aligned_cols=77 Identities=29% Similarity=0.477 Sum_probs=72.3
Q ss_pred CcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCC
Q 002123 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (964)
Q Consensus 277 srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~ 351 (964)
+.+|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999976 577899999999999999999999999999999999999987
Q ss_pred CC
Q 002123 352 KD 353 (964)
Q Consensus 352 k~ 353 (964)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 58
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7.2e-15 Score=134.87 Aligned_cols=84 Identities=24% Similarity=0.455 Sum_probs=77.4
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
....+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 35567899999999999999999999999999999976 5788999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 002123 347 HYSIPKDNP 355 (964)
Q Consensus 347 ~~A~~k~~~ 355 (964)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (103)
T 2cq0_A 90 EWAKPSTNS 98 (103)
T ss_dssp EESSCCCCS
T ss_pred EECCCCCCC
Confidence 999887654
No 59
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.5e-15 Score=135.14 Aligned_cols=84 Identities=24% Similarity=0.381 Sum_probs=77.1
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
....+.++|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 35567899999999999999999999999999999987 4778999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 002123 347 HYSIPKDNP 355 (964)
Q Consensus 347 ~~A~~k~~~ 355 (964)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dnm_A 88 QVARYGRRD 96 (103)
T ss_dssp EECSSCCSC
T ss_pred EECCcCCCC
Confidence 999876544
No 60
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1e-14 Score=135.31 Aligned_cols=84 Identities=15% Similarity=0.309 Sum_probs=76.9
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe--cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki--tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
....+.++|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.++
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 35567899999999999999999999999999999987 5668999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 002123 350 IPKDNP 355 (964)
Q Consensus 350 ~~k~~~ 355 (964)
.++...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4a_A 97 RSGRGT 102 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 876543
No 61
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.58 E-value=7.5e-15 Score=131.67 Aligned_cols=83 Identities=20% Similarity=0.322 Sum_probs=76.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe---cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki---tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3456799999999999999999999999999999986 5778999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 002123 350 IPKDNP 355 (964)
Q Consensus 350 ~~k~~~ 355 (964)
.+....
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 876543
No 62
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.58 E-value=3.9e-15 Score=131.97 Aligned_cols=78 Identities=21% Similarity=0.430 Sum_probs=71.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45789999999999999999999999999999986 5778999999999999999999999999999999999999
Q ss_pred CCC
Q 002123 350 IPK 352 (964)
Q Consensus 350 ~~k 352 (964)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 765
No 63
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.57 E-value=1e-14 Score=136.39 Aligned_cols=85 Identities=20% Similarity=0.404 Sum_probs=77.9
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
....+.++|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 35567899999999999999999999999999999976 5778999999999999999999999999999999999
Q ss_pred eecCCCCCCC
Q 002123 347 HYSIPKDNPS 356 (964)
Q Consensus 347 ~~A~~k~~~~ 356 (964)
.++.++....
T Consensus 90 ~~a~~~~~~~ 99 (115)
T 2dgo_A 90 NWATRKPPAP 99 (115)
T ss_dssp EESSCCCCCS
T ss_pred EEccCCCCCC
Confidence 9998876543
No 64
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.57 E-value=3.6e-15 Score=148.97 Aligned_cols=123 Identities=17% Similarity=0.265 Sum_probs=74.1
Q ss_pred EEeCCHHHHHHHHHHccCCccc--cccceeeecCCCC----------------CCCCccCCcceEEEeccCCCCcHHHHH
Q 002123 319 ISYYDIRAARNAMKALQNKPLR--RRKLDIHYSIPKD----------------NPSEKDANQGTLVVFNLDSSVSTEELH 380 (964)
Q Consensus 319 V~F~d~esA~kAl~~Lng~~i~--Gr~L~V~~A~~k~----------------~~~~~~~~~~tLfV~NLp~~vTeedLr 380 (964)
..|.+.++|+.|+..+++.... |+.+.+.++.... ..+......++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6789999999999999987655 6666655432110 011223345689999999999999999
Q ss_pred HHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCchhh
Q 002123 381 QIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR 441 (964)
Q Consensus 381 elFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~r~ 441 (964)
++|++||.|..|++..+ ++|||||+|.+.++|++||+.|||..|.|++|+|.|+.++..++
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999998754 57999999999999999999999999999999999999877554
No 65
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.3e-15 Score=139.26 Aligned_cols=83 Identities=22% Similarity=0.322 Sum_probs=74.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccC--CccccccceeeecC
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN--KPLRRRKLDIHYSI 350 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng--~~i~Gr~L~V~~A~ 350 (964)
...+.++|||+|||+++||++|+++|++||+|.+|++. +.||||||+|.+.++|++|++.|++ ..|.|++|+|.|+.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~-~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 34578999999999999999999999999999999983 4599999999999999999998864 78999999999998
Q ss_pred CCCCCC
Q 002123 351 PKDNPS 356 (964)
Q Consensus 351 ~k~~~~ 356 (964)
++....
T Consensus 91 ~~~~~~ 96 (105)
T 1sjq_A 91 HKELKT 96 (105)
T ss_dssp SSSCCC
T ss_pred CCCCCc
Confidence 765543
No 66
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-14 Score=133.95 Aligned_cols=84 Identities=25% Similarity=0.483 Sum_probs=77.1
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe------cCCccceEEEEeCCHHHHHHHHHHc-cCCccccccc
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT------ACKHRGFVMISYYDIRAARNAMKAL-QNKPLRRRKL 344 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki------tgksRGfaFV~F~d~esA~kAl~~L-ng~~i~Gr~L 344 (964)
....+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.| ++..|.|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 35567899999999999999999999999999999987 4567999999999999999999999 9999999999
Q ss_pred eeeecCCCCCC
Q 002123 345 DIHYSIPKDNP 355 (964)
Q Consensus 345 ~V~~A~~k~~~ 355 (964)
.|.++.++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999887654
No 67
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.57 E-value=4.7e-15 Score=137.87 Aligned_cols=80 Identities=16% Similarity=0.309 Sum_probs=73.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCc--cccccceeeecC
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKP--LRRRKLDIHYSI 350 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~--i~Gr~L~V~~A~ 350 (964)
...++++|||+|||.++|+++|+++|++||+|.+|++ -+.||||||+|.+.++|++|++.|++.. +.|++|+|.|+.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i-~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVV-MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEE-EcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 4567899999999999999999999999999999988 4679999999999999999999999986 789999999998
Q ss_pred CCC
Q 002123 351 PKD 353 (964)
Q Consensus 351 ~k~ 353 (964)
.++
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 754
No 68
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.57 E-value=5.9e-15 Score=138.67 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=74.6
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEecc
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (964)
+.++|||+||+..+++++|+++|++||.|.+|+++. .++|||||+|.+.++|++|++.|||..|.|++|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999999864 467999999999999999999999999999999999998
Q ss_pred CCchhh
Q 002123 436 PGGARR 441 (964)
Q Consensus 436 ~k~~r~ 441 (964)
.+..++
T Consensus 85 ~~~~~~ 90 (110)
T 3s8s_A 85 KGQQRM 90 (110)
T ss_dssp TTHHHH
T ss_pred CCcHHH
Confidence 776554
No 69
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.57 E-value=5.9e-15 Score=133.93 Aligned_cols=79 Identities=22% Similarity=0.428 Sum_probs=74.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
++++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 4789999999999999999999999999999987 47789999999999999999999999999999999999998
Q ss_pred CCCC
Q 002123 351 PKDN 354 (964)
Q Consensus 351 ~k~~ 354 (964)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7653
No 70
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-14 Score=134.97 Aligned_cols=85 Identities=21% Similarity=0.454 Sum_probs=78.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHcc------CCccc
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQ------NKPLR 340 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Ln------g~~i~ 340 (964)
....+.++|||+|||+++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+ +..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 45567899999999999999999999999999999987 46789999999999999999999999 99999
Q ss_pred cccceeeecCCCCCCC
Q 002123 341 RRKLDIHYSIPKDNPS 356 (964)
Q Consensus 341 Gr~L~V~~A~~k~~~~ 356 (964)
|+.|.|.++.++....
T Consensus 90 g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SCEEEEECCCCCCCCC
T ss_pred CEEEEEEECCCCccCC
Confidence 9999999998876543
No 71
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.7e-14 Score=132.29 Aligned_cols=85 Identities=21% Similarity=0.384 Sum_probs=77.1
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe---cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki---tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
....+.++|||+|||.++|+++|+++|++||.|..|++ ...++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35567899999999999999999999999999999987 344799999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 002123 349 SIPKDNPS 356 (964)
Q Consensus 349 A~~k~~~~ 356 (964)
+.++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cq3_A 90 ATARVMTN 97 (103)
T ss_dssp CCSSCCCC
T ss_pred cccCCCCC
Confidence 98876543
No 72
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.57 E-value=7.5e-15 Score=137.52 Aligned_cols=84 Identities=17% Similarity=0.345 Sum_probs=77.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
....+.++|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 45557799999999999999999999999999999876 6788999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 002123 347 HYSIPKDNP 355 (964)
Q Consensus 347 ~~A~~k~~~ 355 (964)
.++.++...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999887654
No 73
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.1e-15 Score=135.40 Aligned_cols=81 Identities=17% Similarity=0.444 Sum_probs=75.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
...+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 4456799999999999999999999999999999986 47889999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002123 348 YSIPKD 353 (964)
Q Consensus 348 ~A~~k~ 353 (964)
++.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998754
No 74
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=133.00 Aligned_cols=84 Identities=18% Similarity=0.421 Sum_probs=76.5
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe---cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki---tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
....+.++|||+|||.++|+++|+++|++||.|..|++ ...++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 35567899999999999999999999999999999987 344789999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 002123 349 SIPKDNP 355 (964)
Q Consensus 349 A~~k~~~ 355 (964)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9886554
No 75
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=9.2e-15 Score=139.95 Aligned_cols=87 Identities=21% Similarity=0.305 Sum_probs=76.4
Q ss_pred CCCCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccC--Ccccccccee
Q 002123 269 EHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN--KPLRRRKLDI 346 (964)
Q Consensus 269 e~~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng--~~i~Gr~L~V 346 (964)
.......++++|||+|||+++||++|+++|++||.|.+|++ .+.||||||+|.+.++|++|++.|++ ..|.|++|+|
T Consensus 23 ~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i-~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 23 DSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM-LKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp CTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEE-EGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 33445667899999999999999999999999999999988 34589999999999999999999885 6899999999
Q ss_pred eecCCCCCCC
Q 002123 347 HYSIPKDNPS 356 (964)
Q Consensus 347 ~~A~~k~~~~ 356 (964)
.|+.++....
T Consensus 102 ~~a~~k~~~~ 111 (119)
T 2ad9_A 102 QFSNHKELKT 111 (119)
T ss_dssp EECSSSSCCC
T ss_pred EEccCCCCCc
Confidence 9998776543
No 76
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=136.00 Aligned_cols=82 Identities=23% Similarity=0.459 Sum_probs=76.1
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
....+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 45567899999999999999999999999999999976 4778999999999999999999999999999999999
Q ss_pred eecCCCC
Q 002123 347 HYSIPKD 353 (964)
Q Consensus 347 ~~A~~k~ 353 (964)
.++.++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998764
No 77
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.56 E-value=8.5e-15 Score=129.21 Aligned_cols=77 Identities=29% Similarity=0.484 Sum_probs=72.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
..+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356799999999999999999999999999999986 577899999999999999999999999999999999998
Q ss_pred cC
Q 002123 349 SI 350 (964)
Q Consensus 349 A~ 350 (964)
+.
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 78
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=135.07 Aligned_cols=82 Identities=17% Similarity=0.262 Sum_probs=73.6
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCC--ccccccceeeec
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNK--PLRRRKLDIHYS 349 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~--~i~Gr~L~V~~A 349 (964)
....++++|||+|||+++++++|+++|++||+|..|++ .+.||||||+|.+.++|++|++.|++. .|.|++|+|.|+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM-MPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-ECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 35567899999999999999999999999999999987 346999999999999999999999775 499999999999
Q ss_pred CCCCC
Q 002123 350 IPKDN 354 (964)
Q Consensus 350 ~~k~~ 354 (964)
..+..
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 87654
No 79
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.2e-15 Score=138.70 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=73.4
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCC--ceeCCceEEEEeccCC
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR--SDVAGKQIKLEASRPG 437 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG--~~I~Gr~LkV~~A~~k 437 (964)
....+|||+|||+++++++|+++|++||.|++|+++.+ ||||||+|.+.++|++|++.|++ ..|.|++|+|.+|+++
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 35679999999999999999999999999999999876 89999999999999999998874 7899999999999987
Q ss_pred chh
Q 002123 438 GAR 440 (964)
Q Consensus 438 ~~r 440 (964)
..+
T Consensus 93 ~~~ 95 (105)
T 1sjq_A 93 ELK 95 (105)
T ss_dssp SCC
T ss_pred CCC
Confidence 644
No 80
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1e-14 Score=132.47 Aligned_cols=81 Identities=27% Similarity=0.459 Sum_probs=74.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe--------cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--------ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki--------tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
.+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 46799999999999999999999999999999976 2278999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 002123 347 HYSIPKDNP 355 (964)
Q Consensus 347 ~~A~~k~~~ 355 (964)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876654
No 81
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=6.2e-15 Score=133.24 Aligned_cols=82 Identities=22% Similarity=0.453 Sum_probs=75.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEE-Ee-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTI-YT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~sv-ki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
.+.++|||+|||.++|+++|+++|++||.|..| ++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999888 65 567899999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 002123 349 SIPKDNPS 356 (964)
Q Consensus 349 A~~k~~~~ 356 (964)
+.++....
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 98876543
No 82
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=133.15 Aligned_cols=83 Identities=20% Similarity=0.446 Sum_probs=76.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
...+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4456799999999999999999999999999999987 46689999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 002123 348 YSIPKDNP 355 (964)
Q Consensus 348 ~A~~k~~~ 355 (964)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99876654
No 83
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=5.5e-15 Score=135.18 Aligned_cols=78 Identities=29% Similarity=0.441 Sum_probs=73.8
Q ss_pred ceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCchh
Q 002123 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGAR 440 (964)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~r 440 (964)
++|||+|||.++++++|+++|++||.|.+|++..++++||||+|.+.++|++|++.|||..+.|++|+|.+++++..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 479999999999999999999999999999998878999999999999999999999999999999999999987643
No 84
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-14 Score=135.22 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=72.8
Q ss_pred CCCCcEEEEecCCC-CCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCC--ccccccceeeecC
Q 002123 274 EHPSRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNK--PLRRRKLDIHYSI 350 (964)
Q Consensus 274 e~~srtLFVgNLP~-~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~--~i~Gr~L~V~~A~ 350 (964)
..++++|||+|||+ ++|+++|+++|++||+|.+|++ -+.||||||+|.+.++|++|++.|++. .|.|++|+|.++.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI-LNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEE-CSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEE-EcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 45789999999999 9999999999999999999998 456899999999999999999999975 4999999999998
Q ss_pred CCCC
Q 002123 351 PKDN 354 (964)
Q Consensus 351 ~k~~ 354 (964)
.+..
T Consensus 91 ~~~~ 94 (102)
T 1x4d_A 91 KYKR 94 (102)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 6543
No 85
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.55 E-value=3.3e-15 Score=135.29 Aligned_cols=77 Identities=16% Similarity=0.331 Sum_probs=69.9
Q ss_pred ceEEEeccCCCCcHHHHHHHhhccC-ceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHhC-CceeCCceEEEEecc
Q 002123 363 GTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLN-RSDVAGKQIKLEASR 435 (964)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG-~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~LN-G~~I~Gr~LkV~~A~ 435 (964)
++|||+|||.++|+++|+++|++|| .|++|+++. .++|||||+|.+.++|++|++.|+ +..++|++|+|.+|.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 799999875 368999999999999999999885 567999999999999
Q ss_pred CCch
Q 002123 436 PGGA 439 (964)
Q Consensus 436 ~k~~ 439 (964)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8653
No 86
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=8.3e-15 Score=134.03 Aligned_cols=83 Identities=28% Similarity=0.445 Sum_probs=76.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
...+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999986 46789999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 002123 348 YSIPKDNP 355 (964)
Q Consensus 348 ~A~~k~~~ 355 (964)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99887654
No 87
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.5e-14 Score=130.22 Aligned_cols=78 Identities=23% Similarity=0.432 Sum_probs=72.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4557799999999999999999999999999999987 47789999999999999999999999999999999999
Q ss_pred ecC
Q 002123 348 YSI 350 (964)
Q Consensus 348 ~A~ 350 (964)
|+.
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 973
No 88
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.5e-14 Score=131.22 Aligned_cols=83 Identities=27% Similarity=0.404 Sum_probs=75.9
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC---CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~---skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
.....++|||+|||..+++++|+++|++||.|.+|++..+ +++||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 3456789999999999999999999999999999998764 5789999999999999999999999999999999999
Q ss_pred cCCchh
Q 002123 435 RPGGAR 440 (964)
Q Consensus 435 ~~k~~r 440 (964)
+++..+
T Consensus 91 ~~~~~~ 96 (103)
T 2cqi_A 91 TTPSSQ 96 (103)
T ss_dssp CCTTCC
T ss_pred CCCccc
Confidence 986643
No 89
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.7e-14 Score=129.79 Aligned_cols=81 Identities=28% Similarity=0.492 Sum_probs=74.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccc--cccceeeecC
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR--RRKLDIHYSI 350 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~--Gr~L~V~~A~ 350 (964)
...+.++|||+|||.++|+++|+++|++||+|..|++. ..+|||||+|.+.++|++|++.|++..+. |++|.|.++.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHV-KGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEEC-SSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe-CCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 44567999999999999999999999999999999983 34899999999999999999999999999 9999999998
Q ss_pred CCCC
Q 002123 351 PKDN 354 (964)
Q Consensus 351 ~k~~ 354 (964)
++..
T Consensus 92 ~~~~ 95 (97)
T 1why_A 92 SGPS 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 90
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.55 E-value=1.3e-14 Score=133.71 Aligned_cols=84 Identities=25% Similarity=0.475 Sum_probs=76.8
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcc---cccc
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPL---RRRK 343 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i---~Gr~ 343 (964)
....+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+ .|++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 35567899999999999999999999999999999986 477899999999999999999999999987 8999
Q ss_pred ceeeecCCCCCC
Q 002123 344 LDIHYSIPKDNP 355 (964)
Q Consensus 344 L~V~~A~~k~~~ 355 (964)
|.|.++.++...
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999876654
No 91
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.6e-14 Score=132.52 Aligned_cols=83 Identities=20% Similarity=0.380 Sum_probs=76.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcc-CCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCc-ccccccee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQ-FGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKP-LRRRKLDI 346 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~-fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~-i~Gr~L~V 346 (964)
...+.++|||+|||.++|+++|+++|++ ||.|..|++ +++++|||||+|.+.++|++|++.|++.. +.|++|.|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 4456799999999999999999999999 999999987 67799999999999999999999999999 99999999
Q ss_pred eecCCCCCC
Q 002123 347 HYSIPKDNP 355 (964)
Q Consensus 347 ~~A~~k~~~ 355 (964)
.++.++...
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999877654
No 92
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.55 E-value=7.5e-15 Score=133.27 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=69.9
Q ss_pred cceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEecc
Q 002123 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (964)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (964)
...|||+||++.+|+++|+++|.+||+|.++++.. +||||||+|.++++|++|++.||+..+.|++|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 46899999999999999999999999999999876 69999999999999999999999999999999999994
No 93
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=134.73 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=72.2
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCce--eCCceEEEEeccCC
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSD--VAGKQIKLEASRPG 437 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~--I~Gr~LkV~~A~~k 437 (964)
.+.++|||+|||.++++++|+++|++||.|++|++++ .||||||+|.+.++|.+|++.|++.. |.|++|+|.+++++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 3567999999999999999999999999999999885 58999999999999999999999875 78999999999876
Q ss_pred c
Q 002123 438 G 438 (964)
Q Consensus 438 ~ 438 (964)
+
T Consensus 98 ~ 98 (100)
T 3r27_A 98 K 98 (100)
T ss_dssp C
T ss_pred c
Confidence 4
No 94
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.4e-14 Score=132.91 Aligned_cols=83 Identities=25% Similarity=0.340 Sum_probs=73.7
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHcc--CCccccccceeeec
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQ--NKPLRRRKLDIHYS 349 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Ln--g~~i~Gr~L~V~~A 349 (964)
....++++|||+|||+++|+++|+++|++||.|..|++ .+.||||||+|.+.++|++|++.|+ +..+.|++|+|.|+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILM-LKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-ECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 34567899999999999999999999999999999987 3459999999999999999999875 56799999999999
Q ss_pred CCCCCC
Q 002123 350 IPKDNP 355 (964)
Q Consensus 350 ~~k~~~ 355 (964)
.++...
T Consensus 89 ~~~~~~ 94 (101)
T 2cq1_A 89 NHKELK 94 (101)
T ss_dssp SCSSCC
T ss_pred CcccCc
Confidence 876543
No 95
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=130.79 Aligned_cols=79 Identities=18% Similarity=0.376 Sum_probs=73.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999986 47889999999999999999999999999999999999
Q ss_pred ecCC
Q 002123 348 YSIP 351 (964)
Q Consensus 348 ~A~~ 351 (964)
++..
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 96
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.54 E-value=3.7e-15 Score=134.03 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=66.6
Q ss_pred cEEEEecCCCCCCHHHHHHhhccCC--cEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC
Q 002123 278 RTLFVRNINSNVEDSELKALFEQFG--DIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 278 rtLFVgNLP~~vTEedLrelFs~fG--~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
.+|||+|||.++|+++|+++|++|| .|.+|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 8988875 68899999999999999999999999999999999999998
Q ss_pred CCCC
Q 002123 351 PKDN 354 (964)
Q Consensus 351 ~k~~ 354 (964)
++..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7654
No 97
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.4e-14 Score=131.78 Aligned_cols=82 Identities=17% Similarity=0.377 Sum_probs=75.4
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----c-CCccceEEEEeCCHHHHHHHHHHccCCccccccce
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----A-CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----t-gksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~ 345 (964)
....+.++|||+|||.++|+++|+++|++|| |..|++ + ++++|||||+|.+.++|++|| .|++..|.|++|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 4556779999999999999999999999999 999987 2 788999999999999999999 8999999999999
Q ss_pred eeecCCCCCC
Q 002123 346 IHYSIPKDNP 355 (964)
Q Consensus 346 V~~A~~k~~~ 355 (964)
|.++.++...
T Consensus 88 V~~a~~~~~~ 97 (104)
T 1wi8_A 88 VDVADQAQDK 97 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999887654
No 98
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.6e-14 Score=130.00 Aligned_cols=81 Identities=22% Similarity=0.337 Sum_probs=74.8
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
...++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999998643 5799999999999999999999999999999999999
Q ss_pred cCCchh
Q 002123 435 RPGGAR 440 (964)
Q Consensus 435 ~~k~~r 440 (964)
+++..+
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987654
No 99
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.5e-14 Score=128.21 Aligned_cols=79 Identities=22% Similarity=0.390 Sum_probs=74.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCC
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 353 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~ 353 (964)
..+.++|||+|||.++|+++|+++|++||+|..|++. ||||||+|.+.++|++|++.|++..+.|++|.|.++.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 4567999999999999999999999999999999984 8999999999999999999999999999999999998876
Q ss_pred CC
Q 002123 354 NP 355 (964)
Q Consensus 354 ~~ 355 (964)
..
T Consensus 82 ~~ 83 (90)
T 2dnq_A 82 KA 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 100
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.54 E-value=5.5e-15 Score=135.72 Aligned_cols=79 Identities=15% Similarity=0.335 Sum_probs=70.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCc--EEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCC----cccc
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGD--IRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNK----PLRR 341 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~--I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~----~i~G 341 (964)
.+..-.+|||+|||+++|+++|+++|++||. |.+|++ ++++||||||+|.+.++|++|++.|||. .|.|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3456689999999999999999999999995 456664 6889999999999999999999999997 4899
Q ss_pred ccceeeecCC
Q 002123 342 RKLDIHYSIP 351 (964)
Q Consensus 342 r~L~V~~A~~ 351 (964)
|+|.|+||..
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999864
No 101
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.54 E-value=7.3e-15 Score=142.71 Aligned_cols=84 Identities=25% Similarity=0.446 Sum_probs=77.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
....+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556799999999999999999999999999999986 5789999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 002123 347 HYSIPKDNP 355 (964)
Q Consensus 347 ~~A~~k~~~ 355 (964)
.++.++..+
T Consensus 122 ~~a~~~~~~ 130 (135)
T 2lea_A 122 QMARYGRPP 130 (135)
T ss_dssp EECCCCCCC
T ss_pred EECCCCCCC
Confidence 999876544
No 102
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.9e-14 Score=131.35 Aligned_cols=83 Identities=19% Similarity=0.422 Sum_probs=76.1
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC------CCceEEEeeCCHHHHHHHHHHh-CCceeCCceEE
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH------KHNHKFIEFYDIRAAETALRTL-NRSDVAGKQIK 430 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~------skGfaFVeF~d~esA~kAL~~L-NG~~I~Gr~Lk 430 (964)
.....++|||+|||..+++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++.| |+..|.|++|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4456789999999999999999999999999999999765 4899999999999999999999 99999999999
Q ss_pred EEeccCCchh
Q 002123 431 LEASRPGGAR 440 (964)
Q Consensus 431 V~~A~~k~~r 440 (964)
|.+++++..+
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999987643
No 103
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.54 E-value=1.7e-14 Score=139.09 Aligned_cols=82 Identities=21% Similarity=0.434 Sum_probs=76.1
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
....+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 35567899999999999999999999999999999987 4789999999999999999999999999999999999
Q ss_pred eecCCCC
Q 002123 347 HYSIPKD 353 (964)
Q Consensus 347 ~~A~~k~ 353 (964)
.++.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998764
No 104
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.5e-14 Score=131.73 Aligned_cols=82 Identities=29% Similarity=0.444 Sum_probs=74.7
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC--CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEecc
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH--KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~--skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (964)
.....++|||+|||.++++++|+++|++||.|..|++..+ +++||||+|.+.++|++|++.||+..|.|++|+|.+++
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 3445689999999999999999999999999999998654 57899999999999999999999999999999999998
Q ss_pred CCch
Q 002123 436 PGGA 439 (964)
Q Consensus 436 ~k~~ 439 (964)
++..
T Consensus 98 ~~~~ 101 (109)
T 1x4a_A 98 SGRG 101 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8653
No 105
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.54 E-value=1.4e-14 Score=134.49 Aligned_cols=83 Identities=19% Similarity=0.390 Sum_probs=76.1
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
....+.++|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34566799999999999999999999999999999986 5778999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 002123 347 HYSIPKDN 354 (964)
Q Consensus 347 ~~A~~k~~ 354 (964)
.++.++..
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99987543
No 106
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.8e-14 Score=132.13 Aligned_cols=84 Identities=23% Similarity=0.298 Sum_probs=76.6
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC---CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~---skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
.....++|||+|||..+++++|+++|++||.|.+|++..+ .++||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 3456789999999999999999999999999999998753 6789999999999999999999999999999999999
Q ss_pred cCCchhh
Q 002123 435 RPGGARR 441 (964)
Q Consensus 435 ~~k~~r~ 441 (964)
+++..+.
T Consensus 91 ~~~~~~~ 97 (103)
T 2d9p_A 91 QRKEERQ 97 (103)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9877543
No 107
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=131.38 Aligned_cols=81 Identities=26% Similarity=0.481 Sum_probs=75.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
...+.++|||+|||.++|+++|+++|++||+|..|++ .+.+|||||+|.+.++|++|++.|+|..|.|++|.|.++.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~-~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI-HKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEE-ETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEE-ecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 4457799999999999999999999999999999998 467999999999999999999999999999999999999876
Q ss_pred CC
Q 002123 353 DN 354 (964)
Q Consensus 353 ~~ 354 (964)
..
T Consensus 90 ~~ 91 (99)
T 2cpj_A 90 AS 91 (99)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 108
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=128.07 Aligned_cols=78 Identities=13% Similarity=0.320 Sum_probs=72.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----c-CCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----A-CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----t-gksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
..++|||+|||.++|+++|+++|++||.|..|++ + ++++|||||+|.+.++|++|++.|+|..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4689999999999999999999999999999986 1 238999999999999999999999999999999999999
Q ss_pred CCCC
Q 002123 350 IPKD 353 (964)
Q Consensus 350 ~~k~ 353 (964)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 109
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.7e-14 Score=132.61 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=73.0
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHh--CCceeCCceEEEEeccCC
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL--NRSDVAGKQIKLEASRPG 437 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~L--NG~~I~Gr~LkV~~A~~k 437 (964)
.+.++|||+|||..+++++|+++|++||.|.+|+++.+ ||||||+|.+.++|++|++.| ++..|.|++|+|.+++++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 45679999999999999999999999999999998876 999999999999999999987 467899999999999986
Q ss_pred chh
Q 002123 438 GAR 440 (964)
Q Consensus 438 ~~r 440 (964)
..+
T Consensus 92 ~~~ 94 (101)
T 2cq1_A 92 ELK 94 (101)
T ss_dssp SCC
T ss_pred cCc
Confidence 643
No 110
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.54 E-value=1.8e-14 Score=127.67 Aligned_cols=79 Identities=22% Similarity=0.373 Sum_probs=72.8
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC------CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~------skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
..++|||+|||.++++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 3578999999999999999999999999999998643 6899999999999999999999999999999999999
Q ss_pred cCCch
Q 002123 435 RPGGA 439 (964)
Q Consensus 435 ~~k~~ 439 (964)
.+...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 111
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.8e-14 Score=130.17 Aligned_cols=82 Identities=20% Similarity=0.322 Sum_probs=74.9
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
.....++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456689999999999999999999999999999998754 468999999999999999999999999999999999
Q ss_pred ccCCch
Q 002123 434 SRPGGA 439 (964)
Q Consensus 434 A~~k~~ 439 (964)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 998764
No 112
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=2e-14 Score=138.89 Aligned_cols=82 Identities=27% Similarity=0.392 Sum_probs=74.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHH----HhhccCCcEEEEEe--cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLr----elFs~fG~I~svki--tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
...+.++|||+|||+++++++|+ ++|++||+|.+|.+ ++++||||||+|.+.++|++|++.|||..|.|++|.|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 34568999999999999999876 69999999999987 5789999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 002123 347 HYSIPKDN 354 (964)
Q Consensus 347 ~~A~~k~~ 354 (964)
.|+..+..
T Consensus 105 ~~a~~~~~ 112 (127)
T 2a3j_A 105 TFSETPQS 112 (127)
T ss_dssp EECCCCCH
T ss_pred EEccCcch
Confidence 99987653
No 113
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.53 E-value=2.1e-14 Score=127.29 Aligned_cols=77 Identities=19% Similarity=0.362 Sum_probs=70.3
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEecc
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (964)
..++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..++|+.|+|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4579999999999999999999999999999998654 47899999999999999999999999999999999998
Q ss_pred CC
Q 002123 436 PG 437 (964)
Q Consensus 436 ~k 437 (964)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 75
No 114
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.53 E-value=5e-15 Score=136.16 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=73.0
Q ss_pred CCCcEEEEecCCC------CCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccc-c
Q 002123 275 HPSRTLFVRNINS------NVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR-R 342 (964)
Q Consensus 275 ~~srtLFVgNLP~------~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~G-r 342 (964)
..+++|||+|||. ++++++|+++|++||.|.+|++ ++++||||||+|.+.++|++|++.|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 9999999999999999999986 48899999999999999999999999999999 9
Q ss_pred cceeeecCCC
Q 002123 343 KLDIHYSIPK 352 (964)
Q Consensus 343 ~L~V~~A~~k 352 (964)
+|.|.++.++
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999999754
No 115
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.53 E-value=2.2e-14 Score=126.50 Aligned_cols=76 Identities=25% Similarity=0.423 Sum_probs=70.9
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
...++|||+|||.++++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++.|||..++|++|+|++|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35689999999999999999999999999999998643 6899999999999999999999999999999999998
Q ss_pred c
Q 002123 435 R 435 (964)
Q Consensus 435 ~ 435 (964)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 116
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.53 E-value=1.3e-14 Score=130.76 Aligned_cols=79 Identities=23% Similarity=0.332 Sum_probs=73.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
....+.++|||+|||+++++++|+++|++||+|..|++ .++++|||||+|.+.++|++|++.|++..+.|++|.|.
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 35567799999999999999999999999999999986 46789999999999999999999999999999999999
Q ss_pred ecC
Q 002123 348 YSI 350 (964)
Q Consensus 348 ~A~ 350 (964)
++.
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 985
No 117
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.2e-14 Score=129.73 Aligned_cols=84 Identities=21% Similarity=0.352 Sum_probs=76.4
Q ss_pred CccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC---CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 357 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 357 ~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~---skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
......++|||+|||..+++++|+++|++||.|.+|+++.+ +++||||+|.+.++|++|++.|||..|+|++|+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34456789999999999999999999999999999999754 488999999999999999999999999999999999
Q ss_pred ccCCchh
Q 002123 434 SRPGGAR 440 (964)
Q Consensus 434 A~~k~~r 440 (964)
++++..+
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9987643
No 118
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.53 E-value=2.6e-14 Score=135.02 Aligned_cols=82 Identities=24% Similarity=0.444 Sum_probs=75.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
..+.++|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456799999999999999999999999999999986 5778999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 002123 350 IPKDNP 355 (964)
Q Consensus 350 ~~k~~~ 355 (964)
.++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 876543
No 119
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.3e-14 Score=129.45 Aligned_cols=80 Identities=20% Similarity=0.350 Sum_probs=73.7
Q ss_pred CCcceEEEeccCCCCcHHHHH----HHhhccCceEEEEecCC--CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 360 ANQGTLVVFNLDSSVSTEELH----QIFGIYGEIREIRDTQH--KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLr----elFs~fG~I~sIri~~~--skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
....+|||+|||..+++++|+ ++|++||.|.+|+++.+ .++||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345799999999999999999 99999999999999854 388999999999999999999999999999999999
Q ss_pred ccCCch
Q 002123 434 SRPGGA 439 (964)
Q Consensus 434 A~~k~~ 439 (964)
|+++..
T Consensus 87 a~~~~~ 92 (96)
T 2dgx_A 87 ATGASG 92 (96)
T ss_dssp CCCSSC
T ss_pred cCCCCC
Confidence 987653
No 120
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.53 E-value=4.9e-15 Score=170.43 Aligned_cols=146 Identities=20% Similarity=0.324 Sum_probs=105.9
Q ss_pred HHHhhccCCcEEEEEe-------cCCccceE-----EEEeCCHHHHHHHHHHccCCcccccc-------------ceeee
Q 002123 294 LKALFEQFGDIRTIYT-------ACKHRGFV-----MISYYDIRAARNAMKALQNKPLRRRK-------------LDIHY 348 (964)
Q Consensus 294 LrelFs~fG~I~svki-------tgksRGfa-----FV~F~d~esA~kAl~~Lng~~i~Gr~-------------L~V~~ 348 (964)
|.++|.++|+|..|.. ..+..+|+ |+.|....++..++..++......+. ..+..
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7899999999988732 11334444 88887766655555433332222110 00111
Q ss_pred cCCCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCce
Q 002123 349 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSD 423 (964)
Q Consensus 349 A~~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~ 423 (964)
..+............+|||+|||..+|+++|+++|++||.|+.|+|+.+ ++|||||+|.+.++|.+||..|||..
T Consensus 89 ~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 1222222223345579999999999999999999999999999998643 68999999999999999999999999
Q ss_pred eCCceEEEEeccCCch
Q 002123 424 VAGKQIKLEASRPGGA 439 (964)
Q Consensus 424 I~Gr~LkV~~A~~k~~ 439 (964)
|.|+.|.|.++.++..
T Consensus 169 i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 169 IDGRRVLVDVERGRTV 184 (437)
T ss_pred ECCEEEEEEEeCCCCC
Confidence 9999999999997553
No 121
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.1e-14 Score=131.30 Aligned_cols=82 Identities=24% Similarity=0.412 Sum_probs=75.3
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
....++|||+|||..+++++|+++|++||.|.+|+++.+ +++||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 345689999999999999999999999999999998654 689999999999999999999999999999999999
Q ss_pred ccCCchh
Q 002123 434 SRPGGAR 440 (964)
Q Consensus 434 A~~k~~r 440 (964)
++++..+
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9987644
No 122
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.5e-14 Score=132.46 Aligned_cols=81 Identities=20% Similarity=0.233 Sum_probs=74.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
...+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4556899999999999999999999999999999976 567899999999999999999999999999999999999
Q ss_pred cCCCC
Q 002123 349 SIPKD 353 (964)
Q Consensus 349 A~~k~ 353 (964)
+....
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 97543
No 123
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=3.8e-14 Score=130.17 Aligned_cols=82 Identities=20% Similarity=0.417 Sum_probs=74.9
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
....+.++|||+|||.++|+++|+++|++|| |..|++ +++++|||||+|.+.++|++|+ .|++..|.|++|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 4556789999999999999999999999997 999976 5788999999999999999999 89999999999999
Q ss_pred eecCCCCCC
Q 002123 347 HYSIPKDNP 355 (964)
Q Consensus 347 ~~A~~k~~~ 355 (964)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dng_A 88 DIAEGRKQD 96 (103)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999887654
No 124
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=3.7e-14 Score=128.84 Aligned_cols=79 Identities=19% Similarity=0.351 Sum_probs=73.8
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeC--CceEEEEeccCC
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVA--GKQIKLEASRPG 437 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~--Gr~LkV~~A~~k 437 (964)
...++|||+|||.++++++|+++|++||.|.+|++..+ ++||||+|.+.++|++|++.|||..|. |++|+|.+++++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 34579999999999999999999999999999999876 899999999999999999999999999 999999999986
Q ss_pred ch
Q 002123 438 GA 439 (964)
Q Consensus 438 ~~ 439 (964)
..
T Consensus 94 ~~ 95 (97)
T 1why_A 94 PS 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 125
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.5e-14 Score=133.19 Aligned_cols=84 Identities=25% Similarity=0.391 Sum_probs=75.9
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccce
Q 002123 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (964)
Q Consensus 271 ~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~ 345 (964)
.....+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++||+.+++ .|.|++|.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 345667899999999999999999999999999999987 577899999999999999999999998 89999999
Q ss_pred eeecCCCCCC
Q 002123 346 IHYSIPKDNP 355 (964)
Q Consensus 346 V~~A~~k~~~ 355 (964)
|.++.++..+
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999765443
No 126
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.53 E-value=2.6e-14 Score=125.52 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=71.2
Q ss_pred ceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCC
Q 002123 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (964)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k 437 (964)
.+|||+|||.++++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..++|++|+|.+++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999988643 4789999999999999999999999999999999999986
Q ss_pred c
Q 002123 438 G 438 (964)
Q Consensus 438 ~ 438 (964)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 127
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.53 E-value=2.3e-14 Score=130.74 Aligned_cols=79 Identities=23% Similarity=0.379 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEE--------EEe-----cCCccceEEEEeCCHHHHHHHHHHccCCc
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT--------IYT-----ACKHRGFVMISYYDIRAARNAMKALQNKP 338 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~s--------vki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~ 338 (964)
....+.++|||+|||.++|+++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++.|+|..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 35567899999999999999999999999999998 765 57889999999999999999999999999
Q ss_pred cccccceeeecC
Q 002123 339 LRRRKLDIHYSI 350 (964)
Q Consensus 339 i~Gr~L~V~~A~ 350 (964)
+.|++|.|.+|.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999873
No 128
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.53 E-value=1.4e-14 Score=131.18 Aligned_cols=82 Identities=28% Similarity=0.619 Sum_probs=74.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHH----HhhccCCcEEEEEe--cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLr----elFs~fG~I~svki--tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
...++++|||+|||.++++++|+ ++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|.|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34578999999999999999999 99999999999987 4678999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 002123 347 HYSIPKDN 354 (964)
Q Consensus 347 ~~A~~k~~ 354 (964)
.++.++..
T Consensus 84 ~~a~~~~~ 91 (97)
T 1nu4_A 84 QYAKTDSD 91 (97)
T ss_dssp EECSSCCT
T ss_pred EEccCCCc
Confidence 99987653
No 129
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.1e-14 Score=133.90 Aligned_cols=84 Identities=23% Similarity=0.352 Sum_probs=76.5
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEE--------EEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCc
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIR--------TIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKP 338 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~--------svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~ 338 (964)
....+.++|||+|||.++|+++|+++|++||.|. .|++ +++++|||||+|.+.++|++|++.|++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3556789999999999999999999999999998 4765 57889999999999999999999999999
Q ss_pred cccccceeeecCCCCCC
Q 002123 339 LRRRKLDIHYSIPKDNP 355 (964)
Q Consensus 339 i~Gr~L~V~~A~~k~~~ 355 (964)
|.|++|.|.++.++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999887654
No 130
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-14 Score=131.40 Aligned_cols=82 Identities=24% Similarity=0.400 Sum_probs=76.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
...+.++|||+|||.++|+++|+++|++||.|..+..+++++|||||+|.+.++|++|++.|+|..+.|++|.|.++.++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 45577999999999999999999999999999888668999999999999999999999999999999999999999876
Q ss_pred CC
Q 002123 353 DN 354 (964)
Q Consensus 353 ~~ 354 (964)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 131
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=2.2e-14 Score=135.93 Aligned_cols=82 Identities=15% Similarity=0.168 Sum_probs=74.1
Q ss_pred CCCCCcEEEEecCCCC-CCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccC--Cccccccceeeec
Q 002123 273 GEHPSRTLFVRNINSN-VEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN--KPLRRRKLDIHYS 349 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~-vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng--~~i~Gr~L~V~~A 349 (964)
...++++|||+|||++ +|+++|+++|++||+|.+|++ .+.||||||+|.+.++|++|++.|++ ..|.|++|+|.++
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL-MRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE-ecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 3567899999999998 999999999999999999998 57899999999999999999998875 4699999999999
Q ss_pred CCCCCC
Q 002123 350 IPKDNP 355 (964)
Q Consensus 350 ~~k~~~ 355 (964)
..+...
T Consensus 100 ~~~~~~ 105 (112)
T 1x4f_A 100 EKYKKL 105 (112)
T ss_dssp CSCSSS
T ss_pred cccccc
Confidence 876543
No 132
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.53 E-value=3.8e-14 Score=132.56 Aligned_cols=84 Identities=20% Similarity=0.369 Sum_probs=76.1
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
.....++|||+|||..+++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++.|||..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999998754 47899999999999999999999999999999999
Q ss_pred eccCCchhh
Q 002123 433 ASRPGGARR 441 (964)
Q Consensus 433 ~A~~k~~r~ 441 (964)
+++++..+.
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 999876543
No 133
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=2.1e-14 Score=133.85 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=71.4
Q ss_pred CCcceEEEeccCC-CCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCc--eeCCceEEEEeccC
Q 002123 360 ANQGTLVVFNLDS-SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRS--DVAGKQIKLEASRP 436 (964)
Q Consensus 360 ~~~~tLfV~NLp~-~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~--~I~Gr~LkV~~A~~ 436 (964)
.+.++|||+|||+ .+++++|+++|++||.|.+|+++.+ ++||||+|.+.++|++|++.||+. .|.|++|+|.+|+.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 3567999999999 9999999999999999999999865 799999999999999999999864 59999999999986
Q ss_pred Cc
Q 002123 437 GG 438 (964)
Q Consensus 437 k~ 438 (964)
+.
T Consensus 92 ~~ 93 (102)
T 1x4d_A 92 YK 93 (102)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 134
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=4.9e-14 Score=130.64 Aligned_cols=84 Identities=19% Similarity=0.334 Sum_probs=76.2
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhC------CceeCC
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLN------RSDVAG 426 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LN------G~~I~G 426 (964)
.....++|||+|||..+++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++.|| +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 3345679999999999999999999999999999999743 68999999999999999999999 999999
Q ss_pred ceEEEEeccCCchhh
Q 002123 427 KQIKLEASRPGGARR 441 (964)
Q Consensus 427 r~LkV~~A~~k~~r~ 441 (964)
++|+|.++.++..+.
T Consensus 91 ~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAA 105 (111)
T ss_dssp CEEEEECCCCCCCCC
T ss_pred EEEEEEECCCCccCC
Confidence 999999999876543
No 135
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.8e-14 Score=129.10 Aligned_cols=81 Identities=19% Similarity=0.399 Sum_probs=74.4
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
....++|||+|||..+++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++ ||+..|.|++|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999754 68999999999999999999 999999999999999
Q ss_pred ccCCchh
Q 002123 434 SRPGGAR 440 (964)
Q Consensus 434 A~~k~~r 440 (964)
+.++..+
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9987654
No 136
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=2.7e-14 Score=133.20 Aligned_cols=79 Identities=19% Similarity=0.205 Sum_probs=72.1
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCc--eeCCceEEEEeccCC
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRS--DVAGKQIKLEASRPG 437 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~--~I~Gr~LkV~~A~~k 437 (964)
.+.++|||+|||..+++++|+++|++||.|.+|+++++ ||||||+|.+.++|.+|++.|++. .|.|++|+|.+++++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 45679999999999999999999999999999998864 899999999999999999998765 599999999999986
Q ss_pred ch
Q 002123 438 GA 439 (964)
Q Consensus 438 ~~ 439 (964)
..
T Consensus 92 ~~ 93 (104)
T 1wex_A 92 RI 93 (104)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 137
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.2e-14 Score=130.56 Aligned_cols=80 Identities=13% Similarity=0.380 Sum_probs=74.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEE-EEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccc----
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIR-TIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK---- 343 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~-svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~---- 343 (964)
..+.++|||+|||+++++++|+++|++||+|. .|++ +++++|||||+|.+.++|++|++.|+|..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45689999999999999999999999999999 8876 5788999999999999999999999999999999
Q ss_pred ceeeecCCCC
Q 002123 344 LDIHYSIPKD 353 (964)
Q Consensus 344 L~V~~A~~k~ 353 (964)
|+|.|+.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999997653
No 138
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.9e-14 Score=129.77 Aligned_cols=81 Identities=22% Similarity=0.291 Sum_probs=73.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
.....++|||+|||+++|+++|+++|++||.|....++++++|||||+|.+.++|++|++.|+|..|.|++|.|.++.++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 44567999999999999999999999999999633346889999999999999999999999999999999999999876
Q ss_pred C
Q 002123 353 D 353 (964)
Q Consensus 353 ~ 353 (964)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 139
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-14 Score=127.66 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=71.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
.+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46799999999999999999999999999999986 5778999999999999999999999999999999999876
Q ss_pred C
Q 002123 350 I 350 (964)
Q Consensus 350 ~ 350 (964)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 140
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4e-14 Score=130.16 Aligned_cols=83 Identities=20% Similarity=0.312 Sum_probs=75.5
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
.....++|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3445689999999999999999999999999999998653 57899999999999999999999999999999999
Q ss_pred eccCCchh
Q 002123 433 ASRPGGAR 440 (964)
Q Consensus 433 ~A~~k~~r 440 (964)
+++++..+
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99986643
No 141
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.52 E-value=2.8e-14 Score=134.08 Aligned_cols=79 Identities=18% Similarity=0.341 Sum_probs=73.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
....+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 35567899999999999999999999999999999986 4778999999999999999999999999999999999
Q ss_pred eecC
Q 002123 347 HYSI 350 (964)
Q Consensus 347 ~~A~ 350 (964)
.++.
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9873
No 142
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.9e-14 Score=137.79 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=73.8
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCC--ceeCCceEEEEeccCC
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR--SDVAGKQIKLEASRPG 437 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG--~~I~Gr~LkV~~A~~k 437 (964)
.+.++|||+|||+++++++|+++|++||.|++|+++.+ ||||||+|.+.++|++|++.|++ ..|.|++|+|.+|+++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 45679999999999999999999999999999999875 89999999999999999999984 6899999999999987
Q ss_pred chhh
Q 002123 438 GARR 441 (964)
Q Consensus 438 ~~r~ 441 (964)
..+.
T Consensus 108 ~~~~ 111 (119)
T 2ad9_A 108 ELKT 111 (119)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6543
No 143
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.9e-14 Score=128.30 Aligned_cols=81 Identities=20% Similarity=0.379 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCC
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~ 351 (964)
....+.++|||+|||.++|+++|+++|++||+|..|++. ++||||+|.+.++|++|++.|++..+.|++|.|.++.+
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 355678999999999999999999999999999999983 67999999999999999999999999999999999987
Q ss_pred CCCC
Q 002123 352 KDNP 355 (964)
Q Consensus 352 k~~~ 355 (964)
+...
T Consensus 82 ~~~~ 85 (92)
T 2dgt_A 82 RLRT 85 (92)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7554
No 144
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.8e-14 Score=127.07 Aligned_cols=78 Identities=28% Similarity=0.408 Sum_probs=73.1
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCch
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~ 439 (964)
...++|||+|||.++++++|+++|++||.|.+|++. ++||||+|.+.++|++|++.||+..|.|++|+|.+++++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 456899999999999999999999999999999987 78999999999999999999999999999999999998664
Q ss_pred h
Q 002123 440 R 440 (964)
Q Consensus 440 r 440 (964)
+
T Consensus 83 ~ 83 (90)
T 2dnq_A 83 A 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 145
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.7e-14 Score=126.13 Aligned_cols=78 Identities=23% Similarity=0.414 Sum_probs=72.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHc-cCCccccccceeeecC
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKAL-QNKPLRRRKLDIHYSI 350 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~L-ng~~i~Gr~L~V~~A~ 350 (964)
....+.++|||+|||.++++++|+++|++||+|..|++ .+++|||||+|.+.++|++|++.| ++..+.|++|.|.|+.
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~-~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITV-VQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEE-EGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEE-ECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34567799999999999999999999999999999998 457999999999999999999999 9999999999999973
No 146
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.52 E-value=4.1e-14 Score=131.29 Aligned_cols=82 Identities=21% Similarity=0.347 Sum_probs=75.1
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
....++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..|+|++|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345679999999999999999999999999999998754 479999999999999999999999999999999999
Q ss_pred ccCCchh
Q 002123 434 SRPGGAR 440 (964)
Q Consensus 434 A~~k~~r 440 (964)
+.++..+
T Consensus 103 a~~~~~~ 109 (110)
T 1oo0_B 103 CFVKGPK 109 (110)
T ss_dssp SEESSCC
T ss_pred cccCCCC
Confidence 9987654
No 147
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.52 E-value=3.2e-14 Score=137.46 Aligned_cols=84 Identities=20% Similarity=0.402 Sum_probs=77.4
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
....+.++|||+|||.++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567799999999999999999999999999999986 4778999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 002123 347 HYSIPKDNP 355 (964)
Q Consensus 347 ~~A~~k~~~ 355 (964)
.++.++..+
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999887654
No 148
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.52 E-value=4.6e-14 Score=128.01 Aligned_cols=79 Identities=16% Similarity=0.259 Sum_probs=73.6
Q ss_pred cceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 002123 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
.++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..|+|+.|+|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 478999999999999999999999999999998754 489999999999999999999999999999999999998
Q ss_pred Cchh
Q 002123 437 GGAR 440 (964)
Q Consensus 437 k~~r 440 (964)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 7654
No 149
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.1e-14 Score=130.13 Aligned_cols=83 Identities=19% Similarity=0.398 Sum_probs=75.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCC
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~ 351 (964)
...+.++|||+|||.++|+++|+++|++||.|..++. +++++|||||+|.+.++|++|++.|++..|.|+.|.|.++.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 4567899999999999999999999999999955443 688999999999999999999999999999999999999987
Q ss_pred CCCC
Q 002123 352 KDNP 355 (964)
Q Consensus 352 k~~~ 355 (964)
+...
T Consensus 91 ~~~~ 94 (101)
T 2fc9_A 91 RGSP 94 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 150
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5e-14 Score=126.82 Aligned_cols=79 Identities=20% Similarity=0.391 Sum_probs=72.5
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
.....++|||+|||..+++++|+++|++||.|.+|++.. .+++||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999864 357899999999999999999999999999999999
Q ss_pred eccC
Q 002123 433 ASRP 436 (964)
Q Consensus 433 ~A~~ 436 (964)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9875
No 151
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.1e-14 Score=132.15 Aligned_cols=84 Identities=19% Similarity=0.392 Sum_probs=76.7
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
....+.++|||+|||+++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++||+. ++..|.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 35567899999999999999999999999999999976 577899999999999999999998 999999999999
Q ss_pred eecCCCCCCC
Q 002123 347 HYSIPKDNPS 356 (964)
Q Consensus 347 ~~A~~k~~~~ 356 (964)
.++.++....
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 2dh8_A 90 KPCTPRGMQP 99 (105)
T ss_dssp CCSCCSSCCT
T ss_pred EEccCCCCCC
Confidence 9998876543
No 152
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.52 E-value=1.4e-14 Score=131.53 Aligned_cols=73 Identities=21% Similarity=0.294 Sum_probs=69.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
.+.-|||+||++.+||++|+++|.+||+|.++++ ..+||||||+|.+.++|++|++.||+..+.|++|+|++|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l-~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHP-YLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEE-cCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4678999999999999999999999999999998 558999999999999999999999999999999999988
No 153
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.52 E-value=2.9e-14 Score=135.46 Aligned_cols=84 Identities=18% Similarity=0.448 Sum_probs=77.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
....+.++|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34556799999999999999999999999999999986 6778999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 002123 347 HYSIPKDNP 355 (964)
Q Consensus 347 ~~A~~k~~~ 355 (964)
.++.++...
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999876543
No 154
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.9e-14 Score=131.28 Aligned_cols=81 Identities=23% Similarity=0.395 Sum_probs=74.0
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
....++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 345679999999999999999999999999999998643 478999999999999999999999999999999999
Q ss_pred ccCCch
Q 002123 434 SRPGGA 439 (964)
Q Consensus 434 A~~k~~ 439 (964)
|.++..
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 987653
No 155
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.8e-14 Score=131.71 Aligned_cols=77 Identities=25% Similarity=0.376 Sum_probs=72.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
...++|||+|||.++++++|+++|++||.|.+|++ .+++|||||+|.+.++|++|++.|+|..+.|+.|.|.|+.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~-~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKH-YPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEE-ecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 45689999999999999999999999999999998 478999999999999999999999999999999999999763
No 156
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.8e-14 Score=130.54 Aligned_cols=81 Identities=26% Similarity=0.489 Sum_probs=74.8
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
...++|||+|||.++++++|+++|++||.|.+|++..+ +++||||+|.+.++|++|++.||+..|.|++|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999764 5789999999999999999999999999999999999
Q ss_pred cCCchh
Q 002123 435 RPGGAR 440 (964)
Q Consensus 435 ~~k~~r 440 (964)
+++...
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 987644
No 157
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=9.9e-15 Score=133.77 Aligned_cols=81 Identities=25% Similarity=0.460 Sum_probs=74.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
+.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 345689999999999999999999999999999876 577899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002123 349 SIPKDN 354 (964)
Q Consensus 349 A~~k~~ 354 (964)
+.++..
T Consensus 85 a~~~~~ 90 (104)
T 1p1t_A 85 AASEKN 90 (104)
T ss_dssp TTCTTH
T ss_pred CCCccc
Confidence 987643
No 158
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.9e-14 Score=134.25 Aligned_cols=82 Identities=22% Similarity=0.414 Sum_probs=75.2
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe---cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 271 ~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki---tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
.....+.++|||+|||.++|+++|+++|++||+|..|++ .++++|||||+|.+.++|++|++.|+|..+.|++|.|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345567899999999999999999999999999999987 35579999999999999999999999999999999999
Q ss_pred ecCCC
Q 002123 348 YSIPK 352 (964)
Q Consensus 348 ~A~~k 352 (964)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99765
No 159
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.51 E-value=3e-14 Score=131.97 Aligned_cols=80 Identities=16% Similarity=0.308 Sum_probs=73.7
Q ss_pred CCCCCcEEEEecCCCCC------CHHHHHHhhccCCcEEEEEe---cCCccceEEEEeCCHHHHHHHHHHccCCccccc-
Q 002123 273 GEHPSRTLFVRNINSNV------EDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRR- 342 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~v------TEedLrelFs~fG~I~svki---tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr- 342 (964)
.....++|||+|||.++ |+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 44557999999999999 78999999999999999987 578899999999999999999999999999998
Q ss_pred cceeeecCCC
Q 002123 343 KLDIHYSIPK 352 (964)
Q Consensus 343 ~L~V~~A~~k 352 (964)
+|.|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999999754
No 160
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.1e-14 Score=132.17 Aligned_cols=83 Identities=20% Similarity=0.384 Sum_probs=75.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcE----EEEEe-cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDI----RTIYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I----~svki-tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
...+.++|||+|||.++|+++|+++|++||.| ..+++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 44577999999999999999999999999998 45543 78999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 002123 348 YSIPKDNP 355 (964)
Q Consensus 348 ~A~~k~~~ 355 (964)
++.++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99887654
No 161
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.51 E-value=2.8e-14 Score=132.77 Aligned_cols=96 Identities=17% Similarity=0.279 Sum_probs=82.4
Q ss_pred cccccceeeecCCCCCCCCccCCcceEEEeccCCC-CcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHH
Q 002123 339 LRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSS-VSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALR 417 (964)
Q Consensus 339 i~Gr~L~V~~A~~k~~~~~~~~~~~tLfV~NLp~~-vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~ 417 (964)
..|.+|.|..+.+.... ......++|||+|||.. +++++|+++|++||.|.+|++ +++||||+|.+.++|++|++
T Consensus 5 ~~g~~~~~~~s~~~~~~-~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~ 80 (110)
T 1wf1_A 5 SSGMSLKLQASNVTNKN-DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVL 80 (110)
T ss_dssp CCSCCCCCCCCCSCCSC-CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHH
T ss_pred CCCcccccccCCCCCCC-CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHH
Confidence 34677777777654332 23344579999999999 999999999999999999998 68999999999999999999
Q ss_pred HhCCceeCCceEEEEeccCCc
Q 002123 418 TLNRSDVAGKQIKLEASRPGG 438 (964)
Q Consensus 418 ~LNG~~I~Gr~LkV~~A~~k~ 438 (964)
.|||..|+|++|+|.+++++.
T Consensus 81 ~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 81 GENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HHTTCEETTEECCEEESCCCC
T ss_pred HcCCCEECCeEEEEEECCCCC
Confidence 999999999999999998544
No 162
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=4.8e-14 Score=131.06 Aligned_cols=79 Identities=18% Similarity=0.234 Sum_probs=73.9
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCC-----ceEEEEec
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAG-----KQIKLEAS 434 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~G-----r~LkV~~A 434 (964)
....+|||+|||.++++++|+++|++||.|..|+++.+ +||||+|.+.++|++||+.|||..|.| +.|+|.+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 45679999999999999999999999999999999876 999999999999999999999999999 99999999
Q ss_pred cCCchh
Q 002123 435 RPGGAR 440 (964)
Q Consensus 435 ~~k~~r 440 (964)
+++...
T Consensus 91 ~~~~~~ 96 (108)
T 1x4c_A 91 GPRSPS 96 (108)
T ss_dssp SCCSCC
T ss_pred CCCCCC
Confidence 986643
No 163
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.7e-14 Score=127.20 Aligned_cols=80 Identities=25% Similarity=0.341 Sum_probs=73.9
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEecc
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (964)
..++|||+|||..+++++|+++|++||.|.+|++..+ +++||||+|.+.++|++|++.|||..|.|++|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4579999999999999999999999999999998654 57899999999999999999999999999999999999
Q ss_pred CCchh
Q 002123 436 PGGAR 440 (964)
Q Consensus 436 ~k~~r 440 (964)
++..+
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 87643
No 164
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.1e-14 Score=131.46 Aligned_cols=80 Identities=20% Similarity=0.303 Sum_probs=75.1
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCch
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~ 439 (964)
...++|||+|||..+++++|+++|++||.|.+|++..+ ++||||+|.+.++|++|++.|||..|.|++|+|.|++++..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 45679999999999999999999999999999999877 99999999999999999999999999999999999998764
Q ss_pred h
Q 002123 440 R 440 (964)
Q Consensus 440 r 440 (964)
.
T Consensus 102 ~ 102 (109)
T 1x4g_A 102 M 102 (109)
T ss_dssp S
T ss_pred C
Confidence 3
No 165
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.51 E-value=3.2e-14 Score=133.21 Aligned_cols=82 Identities=16% Similarity=0.341 Sum_probs=74.7
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
....++|||+|||.++++++|+++|++||.|.+|+++.+ +++||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345679999999999999999999999999999988654 468999999999999999999999999999999999
Q ss_pred ccCCchh
Q 002123 434 SRPGGAR 440 (964)
Q Consensus 434 A~~k~~r 440 (964)
++++..+
T Consensus 102 a~~~~~~ 108 (115)
T 2cpz_A 102 KRSKNDS 108 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCcC
Confidence 9987654
No 166
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2.9e-14 Score=133.34 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=73.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHH---HhhccCCcEEEEEec--------CCccceEEEEeCCHHHHHHHHHHccCCcccc
Q 002123 273 GEHPSRTLFVRNINSNVEDSELK---ALFEQFGDIRTIYTA--------CKHRGFVMISYYDIRAARNAMKALQNKPLRR 341 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLr---elFs~fG~I~svkit--------gksRGfaFV~F~d~esA~kAl~~Lng~~i~G 341 (964)
.....++|||+|||+++++++|+ ++|++||+|..|++. ++++|||||+|.+.++|++|++.|||..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34457899999999999999999 999999999999861 2566999999999999999999999999999
Q ss_pred ccceeeecCCCC
Q 002123 342 RKLDIHYSIPKD 353 (964)
Q Consensus 342 r~L~V~~A~~k~ 353 (964)
++|.|.++.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998875
No 167
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.51 E-value=3.3e-14 Score=131.12 Aligned_cols=79 Identities=24% Similarity=0.421 Sum_probs=73.5
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
....+.++|||+|||+++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999976 57889999999999999999999999999999999999
Q ss_pred ecC
Q 002123 348 YSI 350 (964)
Q Consensus 348 ~A~ 350 (964)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 168
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.6e-14 Score=130.14 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=75.4
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
.....++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456789999999999999999999999999999998653 47899999999999999999999999999999999
Q ss_pred eccCCchh
Q 002123 433 ASRPGGAR 440 (964)
Q Consensus 433 ~A~~k~~r 440 (964)
+++++..+
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99987643
No 169
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.51 E-value=1.3e-14 Score=133.15 Aligned_cols=75 Identities=16% Similarity=0.338 Sum_probs=68.0
Q ss_pred cceEEEeccCCCCcHHHHHHHhhccCc--eEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCc----eeCCceEE
Q 002123 362 QGTLVVFNLDSSVSTEELHQIFGIYGE--IREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRS----DVAGKQIK 430 (964)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~--I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~----~I~Gr~Lk 430 (964)
-.+|||+|||+.+|+++|+++|++||. |.+|+++.+ +||||||+|.+.++|++|++.|||. .|+||+|+
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 468999999999999999999999995 567887643 6899999999999999999999997 48999999
Q ss_pred EEeccC
Q 002123 431 LEASRP 436 (964)
Q Consensus 431 V~~A~~ 436 (964)
|+||+.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999975
No 170
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.2e-14 Score=130.89 Aligned_cols=82 Identities=20% Similarity=0.319 Sum_probs=74.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCc-EEEEEe------cCCccceEEEEeCCHHHHHHHHHHcc--CCccccccce
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGD-IRTIYT------ACKHRGFVMISYYDIRAARNAMKALQ--NKPLRRRKLD 345 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~-I~svki------tgksRGfaFV~F~d~esA~kAl~~Ln--g~~i~Gr~L~ 345 (964)
.+.++|||+|||.++|+++|+++|++||. |..|++ +++++|||||+|.+.++|++|++.|+ +..+.|++|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45799999999999999999999999998 999987 35789999999999999999999996 5899999999
Q ss_pred eeecCCCCCCC
Q 002123 346 IHYSIPKDNPS 356 (964)
Q Consensus 346 V~~A~~k~~~~ 356 (964)
|.++.++....
T Consensus 86 V~~a~~~~~~~ 96 (109)
T 2dis_A 86 VDWAEPEIDVD 96 (109)
T ss_dssp EEESCSSCSTT
T ss_pred EEEcCCCCCcC
Confidence 99998876543
No 171
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.51 E-value=2.9e-14 Score=137.11 Aligned_cols=83 Identities=16% Similarity=0.338 Sum_probs=75.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEE--EEe-----cCCccceEEEEeCCHHHHHHHHHHccCC----ccc
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT--IYT-----ACKHRGFVMISYYDIRAARNAMKALQNK----PLR 340 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~s--vki-----tgksRGfaFV~F~d~esA~kAl~~Lng~----~i~ 340 (964)
....+.++|||+|||+++|+++|+++|++||.|.. |++ ++++||||||+|.+. +|++|++.|+|. .|.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 45567899999999999999999999999999966 765 688999999999999 999999999999 999
Q ss_pred cccceeeecCCCCCC
Q 002123 341 RRKLDIHYSIPKDNP 355 (964)
Q Consensus 341 Gr~L~V~~A~~k~~~ 355 (964)
|++|.|.++.++...
T Consensus 97 gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 97 GKTINVEFAKGSKRD 111 (131)
T ss_dssp GCCCCCEECCCSCCC
T ss_pred CEEEEEEECCCCCCC
Confidence 999999999876543
No 172
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.51 E-value=5.6e-14 Score=129.15 Aligned_cols=83 Identities=18% Similarity=0.261 Sum_probs=75.2
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCC---ceEEE
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAG---KQIKL 431 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~G---r~LkV 431 (964)
....++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..+.| ++|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 345689999999999999999999999999999998754 47899999999999999999999999988 99999
Q ss_pred EeccCCchhh
Q 002123 432 EASRPGGARR 441 (964)
Q Consensus 432 ~~A~~k~~r~ 441 (964)
.+|+++..+.
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999876543
No 173
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=8.6e-14 Score=129.96 Aligned_cols=80 Identities=16% Similarity=0.316 Sum_probs=73.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCcc--------c
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPL--------R 340 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i--------~ 340 (964)
...+.++|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..| .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4556799999999999999999999999999999986 577899999999999999999999999999 5
Q ss_pred cccceeeecCCC
Q 002123 341 RRKLDIHYSIPK 352 (964)
Q Consensus 341 Gr~L~V~~A~~k 352 (964)
+++|.|.|+.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 778999998764
No 174
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=8.4e-14 Score=125.28 Aligned_cols=78 Identities=26% Similarity=0.407 Sum_probs=71.8
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
.....++|||+|||..+++++|+++|++||.|.+|++..+ +++||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3445689999999999999999999999999999998753 57899999999999999999999999999999999
Q ss_pred ecc
Q 002123 433 ASR 435 (964)
Q Consensus 433 ~A~ 435 (964)
+|+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 175
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.51 E-value=2.8e-14 Score=130.82 Aligned_cols=79 Identities=19% Similarity=0.396 Sum_probs=70.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe------cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT------ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki------tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
.....++|||+|||.++++++|+++|++|| |.+|++ +++++|||||+|.+.++|++|+ .|+|..|.|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 456679999999999999999999999999 999986 4678999999999999999999 89999999999999
Q ss_pred eecCCCC
Q 002123 347 HYSIPKD 353 (964)
Q Consensus 347 ~~A~~k~ 353 (964)
.++.++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998754
No 176
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3e-14 Score=129.34 Aligned_cols=80 Identities=23% Similarity=0.356 Sum_probs=73.2
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC--------CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ--------HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~--------~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
..++|||+|||.++++++|+++|++||.|.+|++.. .+++||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 457999999999999999999999999999998864 346899999999999999999999999999999999
Q ss_pred eccCCchh
Q 002123 433 ASRPGGAR 440 (964)
Q Consensus 433 ~A~~k~~r 440 (964)
+++++..+
T Consensus 84 ~a~~~~~~ 91 (98)
T 2cpf_A 84 ISERATKP 91 (98)
T ss_dssp CSSCSSCC
T ss_pred EccCCCCC
Confidence 99886643
No 177
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.50 E-value=5.2e-14 Score=129.44 Aligned_cols=81 Identities=26% Similarity=0.513 Sum_probs=74.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
...+.++|||+|||+++|+++|+++|++||.|..|++ .+|||||+|.+.++|++|++.|++..|.|++|.|.++.++
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~---~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK---LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEE---CSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE---ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 3456799999999999999999999999999999998 3789999999999999999999999999999999999887
Q ss_pred CCCC
Q 002123 353 DNPS 356 (964)
Q Consensus 353 ~~~~ 356 (964)
....
T Consensus 84 ~~~~ 87 (103)
T 2dgu_A 84 DQKR 87 (103)
T ss_dssp CCCC
T ss_pred cccc
Confidence 6543
No 178
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.50 E-value=3.5e-14 Score=134.16 Aligned_cols=78 Identities=18% Similarity=0.136 Sum_probs=71.7
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccC-ceEEEEec-CCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCc
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDT-QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG-~I~sIri~-~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~ 438 (964)
...+|||+|||.++++++|+++|++|| +|..|++. .+++|||||+|.+.++|++|++.|||..|+|++|+|+++..+.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 457999999999999999999999999 99999985 5689999999999999999999999999999999999997643
No 179
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.50 E-value=2.6e-14 Score=125.81 Aligned_cols=71 Identities=18% Similarity=0.385 Sum_probs=66.2
Q ss_pred CcEEEEecCCCCC------CHHHHHHhhccCCcEEEEEe---cCCccceEEEEeCCHHHHHHHHHHccCCccccc-ccee
Q 002123 277 SRTLFVRNINSNV------EDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRR-KLDI 346 (964)
Q Consensus 277 srtLFVgNLP~~v------TEedLrelFs~fG~I~svki---tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr-~L~V 346 (964)
+++|||+|||.++ |+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|||..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 77999999999999999987 578899999999999999999999999999999 8887
Q ss_pred e
Q 002123 347 H 347 (964)
Q Consensus 347 ~ 347 (964)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 180
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.7e-14 Score=129.00 Aligned_cols=80 Identities=18% Similarity=0.330 Sum_probs=73.9
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEE-EecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREI-RDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sI-ri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
..++|||+|||..+++++|+++|++||.|.+| +++.+ ++|||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45799999999999999999999999999998 88654 5899999999999999999999999999999999999
Q ss_pred cCCchh
Q 002123 435 RPGGAR 440 (964)
Q Consensus 435 ~~k~~r 440 (964)
.++..+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 987654
No 181
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.7e-14 Score=128.39 Aligned_cols=80 Identities=14% Similarity=0.246 Sum_probs=72.7
Q ss_pred CCCcEEEEecCCCCCCHHHHH----HhhccCCcEEEEEec--CCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 275 HPSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYTA--CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLr----elFs~fG~I~svkit--gksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
...++|||+|||.++++++|+ ++|++||+|.+|++. ...||||||+|.+.++|++|++.|||..+.|++|+|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356899999999999999999 999999999999872 22399999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002123 349 SIPKDN 354 (964)
Q Consensus 349 A~~k~~ 354 (964)
+.++..
T Consensus 87 a~~~~~ 92 (96)
T 2dgx_A 87 ATGASG 92 (96)
T ss_dssp CCCSSC
T ss_pred cCCCCC
Confidence 987654
No 182
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.50 E-value=3.7e-14 Score=126.01 Aligned_cols=76 Identities=21% Similarity=0.414 Sum_probs=70.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
...+.++|||+|||+++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ +++..+.|++|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999986 57889999999999999999996 68888999999998
Q ss_pred ec
Q 002123 348 YS 349 (964)
Q Consensus 348 ~A 349 (964)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 183
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5.7e-14 Score=125.92 Aligned_cols=80 Identities=18% Similarity=0.372 Sum_probs=73.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
...+.++|||+|||.++|+++|+++|++||.|..|++. ++||||+|.+.++|++|++.|+|..+.|++|.|.++.++
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 34567999999999999999999999999999999983 679999999999999999999999999999999999876
Q ss_pred CCC
Q 002123 353 DNP 355 (964)
Q Consensus 353 ~~~ 355 (964)
...
T Consensus 82 ~~~ 84 (90)
T 2dnp_A 82 QKK 84 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 184
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5.1e-14 Score=129.17 Aligned_cols=81 Identities=23% Similarity=0.418 Sum_probs=74.3
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
....++|||+|||..+++++|+++|++||.|..|++..+ +++||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345689999999999999999999999999999998753 579999999999999999999999999999999999
Q ss_pred ccCCch
Q 002123 434 SRPGGA 439 (964)
Q Consensus 434 A~~k~~ 439 (964)
++++..
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 997654
No 185
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=9.9e-14 Score=126.49 Aligned_cols=80 Identities=21% Similarity=0.402 Sum_probs=74.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccC--CcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQF--GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~f--G~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
...+.++|||+|||+++|+++|+++|++| |.|..|++ .+|||||+|.+.++|++|++.|+|..|.|++|.|.++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45577999999999999999999999999 99999987 58999999999999999999999999999999999998
Q ss_pred CCCCC
Q 002123 351 PKDNP 355 (964)
Q Consensus 351 ~k~~~ 355 (964)
++...
T Consensus 88 ~~~~~ 92 (99)
T 2cpd_A 88 PVDKD 92 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 186
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.50 E-value=6.8e-14 Score=128.65 Aligned_cols=79 Identities=27% Similarity=0.493 Sum_probs=73.4
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCch
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~ 439 (964)
...++|||+|||.++++++|+++|++||.|.+|++. ++||||+|.+.++|++|++.||+..|.|++|+|.+++++..
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 456799999999999999999999999999999987 67999999999999999999999999999999999998765
Q ss_pred hh
Q 002123 440 RR 441 (964)
Q Consensus 440 r~ 441 (964)
+.
T Consensus 86 ~~ 87 (103)
T 2dgu_A 86 KR 87 (103)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 187
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=6.5e-14 Score=128.06 Aligned_cols=83 Identities=22% Similarity=0.442 Sum_probs=76.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe--cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki--tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
...+.++|||+|||.++|+++|+++|++|+.|..++. +++++|||||+|.+.++|++||+.|++..|.|+.|.|.++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 4567899999999999999999999999998877763 68899999999999999999999999999999999999998
Q ss_pred CCCCC
Q 002123 351 PKDNP 355 (964)
Q Consensus 351 ~k~~~ 355 (964)
++...
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87654
No 188
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=5.2e-14 Score=131.58 Aligned_cols=81 Identities=16% Similarity=0.309 Sum_probs=74.0
Q ss_pred ccCCcceEEEeccCCCCcHHHHH---HHhhccCceEEEEecCC--------CCceEEEeeCCHHHHHHHHHHhCCceeCC
Q 002123 358 KDANQGTLVVFNLDSSVSTEELH---QIFGIYGEIREIRDTQH--------KHNHKFIEFYDIRAAETALRTLNRSDVAG 426 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLr---elFs~fG~I~sIri~~~--------skGfaFVeF~d~esA~kAL~~LNG~~I~G 426 (964)
+....++|||+|||.++++++|+ ++|++||.|.+|+++.+ ++|||||+|.+.++|++|++.|||..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34456799999999999999999 99999999999998754 34899999999999999999999999999
Q ss_pred ceEEEEeccCCc
Q 002123 427 KQIKLEASRPGG 438 (964)
Q Consensus 427 r~LkV~~A~~k~ 438 (964)
++|+|.+|.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999999875
No 189
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.50 E-value=3.9e-14 Score=126.03 Aligned_cols=76 Identities=22% Similarity=0.454 Sum_probs=71.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
..++|||+|||.++|+++|+++|++||.|..+++ +++++|||||+|.+.++|++|+ .|+|..+.|++|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3589999999999999999999999999999976 5778999999999999999999 899999999999999997
Q ss_pred CC
Q 002123 351 PK 352 (964)
Q Consensus 351 ~k 352 (964)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 190
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5.8e-14 Score=124.02 Aligned_cols=77 Identities=31% Similarity=0.443 Sum_probs=71.6
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHh-CCceeCCceEEEEecc
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL-NRSDVAGKQIKLEASR 435 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~L-NG~~I~Gr~LkV~~A~ 435 (964)
.+...++|||+|||..+++++|+++|++||.|.+|++.. .+|||||+|.+.++|++|++.| +|..+.|++|+|+||+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 345668999999999999999999999999999999886 4899999999999999999999 9999999999999985
No 191
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=5.2e-14 Score=128.34 Aligned_cols=80 Identities=24% Similarity=0.339 Sum_probs=74.2
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCc
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~ 438 (964)
....++|||+|||..+++++|+++|++||.|..|++..+ ++||||+|.+.++|++|++.|||..|.|++|+|.+++++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 345679999999999999999999999999999998864 8999999999999999999999999999999999999865
Q ss_pred h
Q 002123 439 A 439 (964)
Q Consensus 439 ~ 439 (964)
.
T Consensus 91 ~ 91 (99)
T 2cpj_A 91 S 91 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 192
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.50 E-value=6.2e-14 Score=129.07 Aligned_cols=83 Identities=16% Similarity=0.320 Sum_probs=75.3
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCcee---CCceE
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDV---AGKQI 429 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I---~Gr~L 429 (964)
.....++|||+|||..+++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++.|||..+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 4456789999999999999999999999999999998754 579999999999999999999999988 89999
Q ss_pred EEEeccCCchh
Q 002123 430 KLEASRPGGAR 440 (964)
Q Consensus 430 kV~~A~~k~~r 440 (964)
+|.++.++..+
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999986643
No 193
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.50 E-value=4.7e-14 Score=131.78 Aligned_cols=81 Identities=23% Similarity=0.421 Sum_probs=73.3
Q ss_pred CccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 002123 357 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 357 ~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
......++|||+|||..+++++|+++|++||.|.+|++. +|||||+|.+.++|++|++.|||..|+|++|+|.++++
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 344567899999999999999999999999999999987 89999999999999999999999999999999999998
Q ss_pred Cchh
Q 002123 437 GGAR 440 (964)
Q Consensus 437 k~~r 440 (964)
+..+
T Consensus 103 ~~~r 106 (108)
T 2jvo_A 103 PAKR 106 (108)
T ss_dssp CC--
T ss_pred CCCC
Confidence 6543
No 194
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=2.9e-14 Score=133.73 Aligned_cols=77 Identities=13% Similarity=0.279 Sum_probs=72.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
...++|||+|||.++|+++|+++|++||.|..|++ .+.+|||||+|.+.++|++|++.|||..+.|++|.|.|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL-PEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 35689999999999999999999999999999998 468999999999999999999999999999999999999654
No 195
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6.9e-14 Score=128.69 Aligned_cols=80 Identities=21% Similarity=0.336 Sum_probs=73.0
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC------CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ------HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~------~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
....++|||+|||..+++++|+++|++|| |.+|+++. .++|||||+|.+.++|++|| .||+..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34568999999999999999999999999 99999874 35789999999999999999 899999999999999
Q ss_pred eccCCchh
Q 002123 433 ASRPGGAR 440 (964)
Q Consensus 433 ~A~~k~~r 440 (964)
++.++..+
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99987654
No 196
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=8.7e-14 Score=129.31 Aligned_cols=81 Identities=14% Similarity=0.206 Sum_probs=73.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCcccc-----ccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRR-----RKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~G-----r~L~V~ 347 (964)
.....++|||+|||+++|+++|+++|++||+|..|++... |||||+|.+.++|++||+.||++.|.| ++|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 3456799999999999999999999999999999998333 999999999999999999999999999 999999
Q ss_pred ecCCCCCC
Q 002123 348 YSIPKDNP 355 (964)
Q Consensus 348 ~A~~k~~~ 355 (964)
++.++...
T Consensus 89 ~a~~~~~~ 96 (108)
T 1x4c_A 89 VDGPRSPS 96 (108)
T ss_dssp ESSCCSCC
T ss_pred eCCCCCCC
Confidence 99886543
No 197
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=9.4e-14 Score=124.99 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=73.0
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCC
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k 437 (964)
.....++|||+|||..+++++|+++|++||.|.+|++. ++||||+|.+.++|++|++.|||..|.|++|+|.+++++
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 34456899999999999999999999999999999987 459999999999999999999999999999999999886
Q ss_pred ch
Q 002123 438 GA 439 (964)
Q Consensus 438 ~~ 439 (964)
..
T Consensus 83 ~~ 84 (92)
T 2dgt_A 83 LR 84 (92)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 198
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=3.7e-14 Score=129.63 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=71.8
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCC
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k 437 (964)
..++|||+|||..+++++|+++|++||.|.+|++. .++|||||+|.+.++|++|++.|||..++|++|+|.|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 45799999999999999999999999999999988 46899999999999999999999999999999999999874
No 199
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=9e-14 Score=124.61 Aligned_cols=78 Identities=26% Similarity=0.386 Sum_probs=72.5
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCc
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~ 438 (964)
....++|||+|||..+++++|+++|++||.|.+|++. ++||||+|.+.++|++|++.|||..+.|++|+|.+++++.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 3456899999999999999999999999999999987 4599999999999999999999999999999999999865
Q ss_pred h
Q 002123 439 A 439 (964)
Q Consensus 439 ~ 439 (964)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 200
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.9e-14 Score=131.53 Aligned_cols=81 Identities=22% Similarity=0.386 Sum_probs=74.8
Q ss_pred CccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC---CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 357 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 357 ~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~---skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
......++|||+|||.++++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..|+|++|+|.+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44556789999999999999999999999999999998754 589999999999999999999999999999999999
Q ss_pred ccCC
Q 002123 434 SRPG 437 (964)
Q Consensus 434 A~~k 437 (964)
++++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9875
No 201
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4e-14 Score=131.57 Aligned_cols=78 Identities=13% Similarity=0.312 Sum_probs=71.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
.....++|||+|||+++|+++|+++|++||+|.+|++ .+++||||||+|.+.++|++|++ +++..+.|+.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 3445699999999999999999999999999999987 37799999999999999999998 999999999999998
Q ss_pred cCC
Q 002123 349 SIP 351 (964)
Q Consensus 349 A~~ 351 (964)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 754
No 202
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=4.6e-14 Score=128.33 Aligned_cols=80 Identities=24% Similarity=0.392 Sum_probs=72.3
Q ss_pred CCCCCcEEEEecCCC-CCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCC
Q 002123 273 GEHPSRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (964)
Q Consensus 273 ~e~~srtLFVgNLP~-~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~ 351 (964)
...+.++|||+|||+ ++|+++|+++|++||.|..|++ .+|||||+|.+.++|++|++.|+|..+.|++|.|.++.+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 345789999999998 9999999999999999999999 489999999999999999999999999999999999987
Q ss_pred CCCC
Q 002123 352 KDNP 355 (964)
Q Consensus 352 k~~~ 355 (964)
+...
T Consensus 83 ~~~~ 86 (96)
T 2kvi_A 83 NARP 86 (96)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 6543
No 203
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.49 E-value=4.9e-14 Score=131.64 Aligned_cols=82 Identities=16% Similarity=0.395 Sum_probs=71.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
...+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 4566799999999999999999999999999999987 4788999999999999999999976 589999999999
Q ss_pred ecCCCCCC
Q 002123 348 YSIPKDNP 355 (964)
Q Consensus 348 ~A~~k~~~ 355 (964)
++.++...
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99877654
No 204
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.9e-14 Score=128.46 Aligned_cols=81 Identities=21% Similarity=0.356 Sum_probs=73.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCc-EEEEEecCCccceEEEEeCCHHHHHHHHHHccC-CccccccceeeecCC
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGD-IRTIYTACKHRGFVMISYYDIRAARNAMKALQN-KPLRRRKLDIHYSIP 351 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~-I~svkitgksRGfaFV~F~d~esA~kAl~~Lng-~~i~Gr~L~V~~A~~ 351 (964)
..+.++|||+|||.++|+++|+++|++||. |..+.+ .++|||||+|.+.++|++|++.|+| ..+.|++|.|.++.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 356799999999999999999999999999 666666 5799999999999999999999999 999999999999988
Q ss_pred CCCCC
Q 002123 352 KDNPS 356 (964)
Q Consensus 352 k~~~~ 356 (964)
+..+.
T Consensus 83 ~~~~~ 87 (93)
T 2cqh_A 83 KKLRS 87 (93)
T ss_dssp CCCCC
T ss_pred ccccC
Confidence 76543
No 205
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=3.2e-14 Score=129.17 Aligned_cols=80 Identities=19% Similarity=0.242 Sum_probs=71.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
.....++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3456799999999999999999999999999865432 67889999999999999999999999999999999999
Q ss_pred ecCCC
Q 002123 348 YSIPK 352 (964)
Q Consensus 348 ~A~~k 352 (964)
++..+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 206
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.49 E-value=6.9e-14 Score=126.09 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=72.1
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
....++|||+|||..+++++|+++|++||.|.+|++..+ +++||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 345689999999999999999999999999999998754 4789999999999999999999999999999999998
Q ss_pred cC
Q 002123 435 RP 436 (964)
Q Consensus 435 ~~ 436 (964)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 207
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.3e-13 Score=126.53 Aligned_cols=83 Identities=17% Similarity=0.316 Sum_probs=74.7
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++ ++..|.|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 35567799999999999999999999999999999976 57889999999999999999998 477899999999
Q ss_pred eecCCCCCCC
Q 002123 347 HYSIPKDNPS 356 (964)
Q Consensus 347 ~~A~~k~~~~ 356 (964)
.++.++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cqg_A 88 KLPNSKQSQD 97 (103)
T ss_dssp ECCCTTCCCC
T ss_pred EecCCCCcCC
Confidence 9998876543
No 208
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.6e-13 Score=125.15 Aligned_cols=79 Identities=23% Similarity=0.338 Sum_probs=72.8
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhcc--CceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEecc
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIY--GEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~f--G~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (964)
.....++|||+|||..+++++|+++|++| |.|.+|++. ++||||+|.+.++|++|++.|||..|.|++|+|.+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 33456899999999999999999999999 999999875 7899999999999999999999999999999999999
Q ss_pred CCch
Q 002123 436 PGGA 439 (964)
Q Consensus 436 ~k~~ 439 (964)
++..
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 209
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.2e-14 Score=129.77 Aligned_cols=82 Identities=15% Similarity=0.310 Sum_probs=74.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
.....++|||+|||.++|+++|+++|++||.|..|++. ..+|||||+|.+.++|++|++.|+|..|.|+.|.|.|+.++
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF-PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 34567999999999999999999999999999999983 33999999999999999999999999999999999999877
Q ss_pred CCC
Q 002123 353 DNP 355 (964)
Q Consensus 353 ~~~ 355 (964)
...
T Consensus 100 ~~~ 102 (109)
T 1x4g_A 100 PDM 102 (109)
T ss_dssp CSS
T ss_pred CCC
Confidence 554
No 210
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.49 E-value=4.3e-14 Score=132.03 Aligned_cols=81 Identities=26% Similarity=0.517 Sum_probs=73.4
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC
Q 002123 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 271 ~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
.....+.++|||+|||.++|+++|+++|++||.|..|++. +|||||+|.+.++|++|++.|+|..+.|+.|.|.++.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3456678999999999999999999999999999999985 9999999999999999999999999999999999998
Q ss_pred CCCC
Q 002123 351 PKDN 354 (964)
Q Consensus 351 ~k~~ 354 (964)
++..
T Consensus 102 ~~~~ 105 (108)
T 2jvo_A 102 LPAK 105 (108)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 7654
No 211
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.49 E-value=2.7e-14 Score=134.87 Aligned_cols=79 Identities=11% Similarity=0.100 Sum_probs=72.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCC-cEEEEEe-cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCC
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFG-DIRTIYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG-~I~svki-tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~ 351 (964)
....++|||+|||+++|+++|+++|++|| +|..+++ ..+++|||||+|.+.++|++||+.|||..|.|++|.|.++..
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 34568999999999999999999999999 8999988 467999999999999999999999999999999999999865
Q ss_pred C
Q 002123 352 K 352 (964)
Q Consensus 352 k 352 (964)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 212
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.4e-14 Score=132.89 Aligned_cols=80 Identities=21% Similarity=0.433 Sum_probs=73.1
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
...++|||+|||..+++++|+++|++||.|.+|+++. .++|||||+|.+.++|++|+ .|||..|.|+.|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 3457999999999999999999999999999999973 46899999999999999999 89999999999999999
Q ss_pred cCCchh
Q 002123 435 RPGGAR 440 (964)
Q Consensus 435 ~~k~~r 440 (964)
+++..+
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 876543
No 213
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.49 E-value=8.1e-14 Score=137.50 Aligned_cols=82 Identities=26% Similarity=0.394 Sum_probs=76.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
...+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++||+.|++..|.|++|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4457899999999999999999999999999999987 57789999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 002123 348 YSIPKDN 354 (964)
Q Consensus 348 ~A~~k~~ 354 (964)
++.++..
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9987654
No 214
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.49 E-value=5e-14 Score=126.25 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=73.8
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC---CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~---skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
...++|||+|||..+++++|+++|++||.|.+|++..+ +++||||+|.+.++|++|++.|||..|.|++|+|.++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 45679999999999999999999999999999988753 578999999999999999999999999999999999988
Q ss_pred Cch
Q 002123 437 GGA 439 (964)
Q Consensus 437 k~~ 439 (964)
+..
T Consensus 86 ~~~ 88 (92)
T 2dgv_A 86 ASG 88 (92)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 215
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=7.1e-14 Score=125.38 Aligned_cols=80 Identities=11% Similarity=0.240 Sum_probs=73.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
.....++|||+|||.++|+++|+++|++| .|..|++ +++++|||||+|.+.++|++|++ |++..|.|+.|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 44567999999999999999999999999 8988876 57889999999999999999999 999999999999999
Q ss_pred cCCCCC
Q 002123 349 SIPKDN 354 (964)
Q Consensus 349 A~~k~~ 354 (964)
+.++..
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 987643
No 216
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=7.6e-14 Score=130.88 Aligned_cols=77 Identities=19% Similarity=0.265 Sum_probs=72.3
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCc
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~ 438 (964)
..++|||+|||..+++++|+++|++||.|.+|++.. .++||||+|.+.++|++|++.|||..|.|++|+|.||....
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 457999999999999999999999999999999875 68999999999999999999999999999999999998654
No 217
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.48 E-value=9.1e-14 Score=127.14 Aligned_cols=77 Identities=25% Similarity=0.396 Sum_probs=72.1
Q ss_pred CCCCCcEEEEecCCC-CCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCC
Q 002123 273 GEHPSRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (964)
Q Consensus 273 ~e~~srtLFVgNLP~-~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~ 351 (964)
...+.++|||+|||. ++++++|+++|++||.|..|++ .+|||||+|.+.++|++|++.|+|..+.|++|.|.++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 456789999999998 9999999999999999999999 499999999999999999999999999999999999976
Q ss_pred C
Q 002123 352 K 352 (964)
Q Consensus 352 k 352 (964)
+
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 218
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.48 E-value=2.1e-14 Score=129.45 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=68.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
..+.++|||+|||+++|+++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 345699999999999999999999999999875543 578899999999999999999999999999999999998
Q ss_pred cC
Q 002123 349 SI 350 (964)
Q Consensus 349 A~ 350 (964)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 219
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.48 E-value=7.8e-14 Score=130.16 Aligned_cols=82 Identities=27% Similarity=0.357 Sum_probs=74.6
Q ss_pred CccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEE
Q 002123 357 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL 431 (964)
Q Consensus 357 ~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV 431 (964)
......++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..|+|++|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456689999999999999999999999999999998643 4789999999999999999999999999999999
Q ss_pred EeccCCc
Q 002123 432 EASRPGG 438 (964)
Q Consensus 432 ~~A~~k~ 438 (964)
.+++++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9999864
No 220
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.7e-13 Score=124.70 Aligned_cols=80 Identities=18% Similarity=0.313 Sum_probs=74.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
...+.++|||+|| ++|+++|+++|++||+|..|++ .+++|||||+|.+.++|++|++.|++..|.|++|.|.++.++
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 4457799999996 8999999999999999999999 689999999999999999999999999999999999999877
Q ss_pred CCC
Q 002123 353 DNP 355 (964)
Q Consensus 353 ~~~ 355 (964)
...
T Consensus 88 ~~~ 90 (97)
T 1x5p_A 88 PML 90 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 221
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.48 E-value=3.3e-14 Score=122.82 Aligned_cols=70 Identities=19% Similarity=0.427 Sum_probs=66.3
Q ss_pred EEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 279 TLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 279 tLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
+|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++ +++..+.|++|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5999999999999999999999999999976 57789999999999999999997 9999999999999875
No 222
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.4e-13 Score=127.11 Aligned_cols=80 Identities=13% Similarity=0.212 Sum_probs=72.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEE-EEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT-IYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~s-vki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
.....++|||+|||+++|+++|+++|++||.|.. |++ +++++|||||+|.+.++|++||+. ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 3456799999999999999999999999999987 765 688999999999999999999996 9999999999999
Q ss_pred ecCCCC
Q 002123 348 YSIPKD 353 (964)
Q Consensus 348 ~A~~k~ 353 (964)
++.+++
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987654
No 223
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.48 E-value=8.6e-14 Score=134.40 Aligned_cols=84 Identities=23% Similarity=0.358 Sum_probs=75.8
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
.....++|||+|||.++++++|+++|++||.|++|+++.+ ++|||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3445679999999999999999999999999999998643 48899999999999999999999999999999999
Q ss_pred eccCCchhh
Q 002123 433 ASRPGGARR 441 (964)
Q Consensus 433 ~A~~k~~r~ 441 (964)
+++++..+.
T Consensus 118 ~a~~~~~~~ 126 (139)
T 1u6f_A 118 LAASGHQRP 126 (139)
T ss_dssp ESSCCCCCC
T ss_pred ECCCCCCCC
Confidence 999876543
No 224
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.48 E-value=2.7e-14 Score=131.24 Aligned_cols=78 Identities=13% Similarity=0.184 Sum_probs=72.2
Q ss_pred CcceEEEeccCC------CCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHhCCceeCC-ce
Q 002123 361 NQGTLVVFNLDS------SVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAG-KQ 428 (964)
Q Consensus 361 ~~~tLfV~NLp~------~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~LNG~~I~G-r~ 428 (964)
..++|||+|||. ++++++|+++|++||.|.+|+++. .++|||||+|.+.++|++|++.|||..|.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357999999999 999999999999999999999863 468999999999999999999999999999 99
Q ss_pred EEEEeccCCc
Q 002123 429 IKLEASRPGG 438 (964)
Q Consensus 429 LkV~~A~~k~ 438 (964)
|+|.+|.+++
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999998744
No 225
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=8.5e-14 Score=126.63 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=71.2
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEe-cCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCC
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri-~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k 437 (964)
....++|||+|||..+++++|+++|++||.|. +++ ...++|||||+|.+.++|++|++.|||..|.|++|+|.+++++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 34567999999999999999999999999996 444 3467999999999999999999999999999999999999886
Q ss_pred c
Q 002123 438 G 438 (964)
Q Consensus 438 ~ 438 (964)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 226
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.48 E-value=1.9e-14 Score=128.73 Aligned_cols=76 Identities=24% Similarity=0.441 Sum_probs=68.2
Q ss_pred cEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 278 rtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.+ |++|++.|+|..+.|++|.|.+|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999987 4788999999999999 99999999999999999999999876
Q ss_pred CC
Q 002123 353 DN 354 (964)
Q Consensus 353 ~~ 354 (964)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 227
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.48 E-value=1.1e-13 Score=131.56 Aligned_cols=83 Identities=24% Similarity=0.414 Sum_probs=76.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567799999999999999999999999999999986 577899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 002123 349 SIPKDNP 355 (964)
Q Consensus 349 A~~k~~~ 355 (964)
+.++...
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9876543
No 228
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.48 E-value=8.8e-14 Score=132.14 Aligned_cols=82 Identities=23% Similarity=0.387 Sum_probs=74.9
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
....++|||+|||..+++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++.|||..|.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345679999999999999999999999999999998654 489999999999999999999999999999999999
Q ss_pred ccCCchh
Q 002123 434 SRPGGAR 440 (964)
Q Consensus 434 A~~k~~r 440 (964)
|.++..+
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9876644
No 229
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.1e-14 Score=130.50 Aligned_cols=82 Identities=21% Similarity=0.357 Sum_probs=75.1
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
...++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34679999999999999999999999999999988643 4789999999999999999999999999999999999
Q ss_pred cCCchhh
Q 002123 435 RPGGARR 441 (964)
Q Consensus 435 ~~k~~r~ 441 (964)
.++..+.
T Consensus 86 ~~~~~~~ 92 (104)
T 1p1t_A 86 ASEKNKE 92 (104)
T ss_dssp TCTTHHH
T ss_pred CCccchh
Confidence 9877654
No 230
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=6.5e-14 Score=126.66 Aligned_cols=82 Identities=24% Similarity=0.342 Sum_probs=74.3
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCC
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k 437 (964)
.....++|||+|||..+++++|+++|++||.|..+.....++|||||+|.+.++|++|++.|||..|.|++|+|.++.++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 34466899999999999999999999999999888555567899999999999999999999999999999999999886
Q ss_pred ch
Q 002123 438 GA 439 (964)
Q Consensus 438 ~~ 439 (964)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 231
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.48 E-value=1.6e-13 Score=125.44 Aligned_cols=77 Identities=29% Similarity=0.388 Sum_probs=71.8
Q ss_pred cCCcceEEEeccCC-CCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCC
Q 002123 359 DANQGTLVVFNLDS-SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (964)
Q Consensus 359 ~~~~~tLfV~NLp~-~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k 437 (964)
....++|||+|||. .+++++|+++|++||.|.+|++. +|||||+|.+.++|++|++.|||..++|++|+|++++++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 34568999999998 99999999999999999999983 899999999999999999999999999999999999875
Q ss_pred c
Q 002123 438 G 438 (964)
Q Consensus 438 ~ 438 (964)
.
T Consensus 96 ~ 96 (97)
T 2xnq_A 96 A 96 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 232
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.48 E-value=3.9e-14 Score=141.23 Aligned_cols=78 Identities=14% Similarity=0.267 Sum_probs=71.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCC--cEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFG--DIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG--~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
...++|||+|||+++|+++|+++|++|| +|.+|++ ++++||||||+|.+.++|++||+.|+|..|.|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 9999986 68899999999999999999999999999999999999
Q ss_pred ecCCC
Q 002123 348 YSIPK 352 (964)
Q Consensus 348 ~A~~k 352 (964)
++.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99753
No 233
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.48 E-value=1.1e-13 Score=130.12 Aligned_cols=77 Identities=17% Similarity=0.345 Sum_probs=70.9
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
....++|||+|||.++++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..|+|++|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 445689999999999999999999999999999998753 589999999999999999999999999999999999
Q ss_pred cc
Q 002123 434 SR 435 (964)
Q Consensus 434 A~ 435 (964)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 75
No 234
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.47 E-value=9.4e-14 Score=129.19 Aligned_cols=78 Identities=23% Similarity=0.477 Sum_probs=72.6
Q ss_pred CCCCCcEEEEecCCCC-CCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCC
Q 002123 273 GEHPSRTLFVRNINSN-VEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~-vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~ 351 (964)
.....++|||+|||++ +|+++|+++|++||+|..|++ ++|||||+|.+.++|++|++.|++..|.|+.|.|.++.+
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 3445689999999999 999999999999999999999 799999999999999999999999999999999999975
Q ss_pred CC
Q 002123 352 KD 353 (964)
Q Consensus 352 k~ 353 (964)
+.
T Consensus 100 ~~ 101 (110)
T 1wf1_A 100 PK 101 (110)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 235
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.47 E-value=1.9e-14 Score=129.28 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=65.6
Q ss_pred ceEEEeccCCCCcHHHHHHHhhccC--ceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEecc
Q 002123 363 GTLVVFNLDSSVSTEELHQIFGIYG--EIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (964)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG--~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (964)
.+|||+|||.++++++|+++|++|| .|.+|+++. .++|||||+|.+.++|++|++.|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999998864 357899999999999999999999999999999999998
Q ss_pred CCch
Q 002123 436 PGGA 439 (964)
Q Consensus 436 ~k~~ 439 (964)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 8654
No 236
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=5.3e-14 Score=129.12 Aligned_cols=82 Identities=21% Similarity=0.251 Sum_probs=75.2
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhc-cCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCce-eCCceEEEEe
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGI-YGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSD-VAGKQIKLEA 433 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~-fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~-I~Gr~LkV~~ 433 (964)
....+|||+|||.++++++|+++|++ ||.|.+|+++.+ ++|||||+|.+.++|++|++.|||.. |.|++|+|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45679999999999999999999999 999999998654 68899999999999999999999999 9999999999
Q ss_pred ccCCchhh
Q 002123 434 SRPGGARR 441 (964)
Q Consensus 434 A~~k~~r~ 441 (964)
+.++..+.
T Consensus 87 a~~~~~~~ 94 (104)
T 2dhg_A 87 AIPKASRV 94 (104)
T ss_dssp CCCCCSCC
T ss_pred ccCCCcCC
Confidence 98876543
No 237
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.47 E-value=1.6e-13 Score=132.01 Aligned_cols=78 Identities=28% Similarity=0.471 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 272 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 272 ~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
....+.++|||+|||.++|+++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|+|..|.|++|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999987 4778999999999999999999999999999999999
Q ss_pred eec
Q 002123 347 HYS 349 (964)
Q Consensus 347 ~~A 349 (964)
.+|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 885
No 238
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.47 E-value=1.1e-13 Score=125.35 Aligned_cols=81 Identities=21% Similarity=0.411 Sum_probs=74.5
Q ss_pred CCcceEEEeccCCCCcHHHHH----HHhhccCceEEEEecC--CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 360 ANQGTLVVFNLDSSVSTEELH----QIFGIYGEIREIRDTQ--HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLr----elFs~fG~I~sIri~~--~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
...++|||+|||..+++++|+ ++|++||.|.+|++.. .++|||||+|.+.++|++|++.|||..+.|++|+|.+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356799999999999999999 9999999999999874 4689999999999999999999999999999999999
Q ss_pred ccCCchh
Q 002123 434 SRPGGAR 440 (964)
Q Consensus 434 A~~k~~r 440 (964)
++++...
T Consensus 86 a~~~~~~ 92 (97)
T 1nu4_A 86 AKTDSDI 92 (97)
T ss_dssp CSSCCTH
T ss_pred ccCCCcc
Confidence 9987654
No 239
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.47 E-value=1e-13 Score=133.72 Aligned_cols=81 Identities=21% Similarity=0.366 Sum_probs=74.3
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
....++|||+|||.++++++|+++|++||.|.+|++.. ..+|||||+|.+.++|++|++.|||..|+|++|+|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567999999999999999999999999999999864 3689999999999999999999999999999999999
Q ss_pred ccCCch
Q 002123 434 SRPGGA 439 (964)
Q Consensus 434 A~~k~~ 439 (964)
+.++..
T Consensus 123 a~~~~p 128 (129)
T 2kxn_B 123 SITKRP 128 (129)
T ss_dssp CSSSSC
T ss_pred ecCCCC
Confidence 988653
No 240
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.2e-13 Score=129.42 Aligned_cols=82 Identities=22% Similarity=0.292 Sum_probs=74.3
Q ss_pred CccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEE
Q 002123 357 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL 431 (964)
Q Consensus 357 ~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV 431 (964)
..+...++|||+|||..+++++|+++|++||.|.+|++..+ +++||||+|.+.++|++|++.|++ .|.|++|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 34456789999999999999999999999999999999754 578999999999999999999998 899999999
Q ss_pred EeccCCch
Q 002123 432 EASRPGGA 439 (964)
Q Consensus 432 ~~A~~k~~ 439 (964)
.++.++..
T Consensus 91 ~~a~~~~~ 98 (116)
T 2cqd_A 91 NLAYLGAK 98 (116)
T ss_dssp EESTTTCC
T ss_pred EEcccCCC
Confidence 99987553
No 241
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.1e-13 Score=128.90 Aligned_cols=83 Identities=19% Similarity=0.329 Sum_probs=74.9
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceE--------EEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCcee
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIR--------EIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDV 424 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~--------sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I 424 (964)
.....++|||+|||..+++++|+++|++||.|. .|++..+ ++|||||+|.+.++|++|++.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999998 5887653 578999999999999999999999999
Q ss_pred CCceEEEEeccCCchh
Q 002123 425 AGKQIKLEASRPGGAR 440 (964)
Q Consensus 425 ~Gr~LkV~~A~~k~~r 440 (964)
.|++|+|.+++++..+
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999987654
No 242
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=3.8e-14 Score=122.75 Aligned_cols=71 Identities=17% Similarity=0.430 Sum_probs=67.0
Q ss_pred cEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 278 rtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.++ ..+.|++|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 57999999999999999999999999998876 57789999999999999999999999 9999999999987
No 243
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=3.5e-14 Score=129.82 Aligned_cols=82 Identities=16% Similarity=0.238 Sum_probs=72.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEE----ecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svk----itgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
...+.++|||+|||.++|+++|+++|++||.|..+. .+++++|||||+|.+.++|++|++ |++..|.|+.|.|.+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 344679999999999999999999999999876621 258899999999999999999998 999999999999999
Q ss_pred cCCCCCC
Q 002123 349 SIPKDNP 355 (964)
Q Consensus 349 A~~k~~~ 355 (964)
+.++..+
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9876543
No 244
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.46 E-value=1.1e-13 Score=123.04 Aligned_cols=76 Identities=28% Similarity=0.388 Sum_probs=70.5
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEecc
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (964)
..++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|+ .|||..+.|++|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999999999988643 5889999999999999999 899999999999999998
Q ss_pred CC
Q 002123 436 PG 437 (964)
Q Consensus 436 ~k 437 (964)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 74
No 245
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=1.6e-13 Score=132.51 Aligned_cols=82 Identities=15% Similarity=0.251 Sum_probs=74.1
Q ss_pred CCcceEEEeccCCCCcHHHHH----HHhhccCceEEEEecC--CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 360 ANQGTLVVFNLDSSVSTEELH----QIFGIYGEIREIRDTQ--HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLr----elFs~fG~I~sIri~~--~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
....+|||+|||+.+++++|+ ++|++||.|.+|.+.. .++|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 346799999999999999876 6999999999998864 5789999999999999999999999999999999999
Q ss_pred ccCCchhh
Q 002123 434 SRPGGARR 441 (964)
Q Consensus 434 A~~k~~r~ 441 (964)
|+.+....
T Consensus 107 a~~~~~~~ 114 (127)
T 2a3j_A 107 SETPQSQV 114 (127)
T ss_dssp CCCCCHHH
T ss_pred ccCcchhc
Confidence 99877544
No 246
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=130.68 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=73.3
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
..++|||+|||.++++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..|.|++|+|.++++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 4579999999999999999999999999999998654 579999999999999999999999999999999999987
Q ss_pred Cch
Q 002123 437 GGA 439 (964)
Q Consensus 437 k~~ 439 (964)
+..
T Consensus 86 ~~~ 88 (116)
T 2fy1_A 86 PSF 88 (116)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 247
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=127.64 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=73.6
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
....++|||+|||..+++++|+++|++||.|.+|++..+ +++||||+|.+.++|++|++.|||..|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 345679999999999999999999999999999998754 4789999999999999999999999999999999999
Q ss_pred cCCch
Q 002123 435 RPGGA 439 (964)
Q Consensus 435 ~~k~~ 439 (964)
+....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 86543
No 248
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.46 E-value=3.1e-13 Score=128.29 Aligned_cols=81 Identities=16% Similarity=0.250 Sum_probs=74.3
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
.....++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..|+|++|+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3345679999999999999999999999999999998754 689999999999999999999999999999999999
Q ss_pred ccCCc
Q 002123 434 SRPGG 438 (964)
Q Consensus 434 A~~k~ 438 (964)
|.+..
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 98754
No 249
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=1.8e-13 Score=125.59 Aligned_cols=81 Identities=17% Similarity=0.245 Sum_probs=72.8
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
.....++|||+|||..+++++|+++|++|| |.+|+++.+ ++|||||+|.+.++|++|+ .|||..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 344578999999999999999999999997 999998754 4789999999999999999 799999999999999
Q ss_pred eccCCchh
Q 002123 433 ASRPGGAR 440 (964)
Q Consensus 433 ~A~~k~~r 440 (964)
++.++..+
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99986643
No 250
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=7.6e-14 Score=125.68 Aligned_cols=79 Identities=24% Similarity=0.314 Sum_probs=71.1
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCc-eEEEEecCCCCceEEEeeCCHHHHHHHHHHhCC-ceeCCceEEEEeccCC
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGE-IREIRDTQHKHNHKFIEFYDIRAAETALRTLNR-SDVAGKQIKLEASRPG 437 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~-I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG-~~I~Gr~LkV~~A~~k 437 (964)
...++|||+|||.++++++|+++|++||. |..+.+. +++||||+|.+.++|++|++.||| ..|+|++|+|.+++++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 34579999999999999999999999999 6666553 589999999999999999999999 9999999999999987
Q ss_pred chh
Q 002123 438 GAR 440 (964)
Q Consensus 438 ~~r 440 (964)
..+
T Consensus 84 ~~~ 86 (93)
T 2cqh_A 84 KLR 86 (93)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 251
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.3e-14 Score=132.98 Aligned_cols=79 Identities=18% Similarity=0.404 Sum_probs=72.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
+...++|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|+ .|++..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345689999999999999999999999999999987 3789999999999999999999 8999999999999999
Q ss_pred cCCCC
Q 002123 349 SIPKD 353 (964)
Q Consensus 349 A~~k~ 353 (964)
+.++.
T Consensus 101 a~~~~ 105 (114)
T 2cq4_A 101 SQAEK 105 (114)
T ss_dssp HHHHH
T ss_pred cCCCc
Confidence 87643
No 252
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.46 E-value=1.6e-13 Score=125.07 Aligned_cols=78 Identities=21% Similarity=0.313 Sum_probs=71.2
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEE--------EEecCC-----CCceEEEeeCCHHHHHHHHHHhCCcee
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE--------IRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDV 424 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~s--------Iri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I 424 (964)
.....++|||+|||.++++++|+++|++||.|.+ |++..+ ++|||||+|.+.++|++|++.|||..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3455689999999999999999999999999998 888643 478999999999999999999999999
Q ss_pred CCceEEEEecc
Q 002123 425 AGKQIKLEASR 435 (964)
Q Consensus 425 ~Gr~LkV~~A~ 435 (964)
.|++|+|++|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999984
No 253
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=8.9e-14 Score=130.41 Aligned_cols=82 Identities=17% Similarity=0.427 Sum_probs=74.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
..+.++|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++||+. ++..|.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 345699999999999999999999999999999976 477899999999999999999986 99999999999999
Q ss_pred cCCCCCCC
Q 002123 349 SIPKDNPS 356 (964)
Q Consensus 349 A~~k~~~~ 356 (964)
+.++....
T Consensus 103 a~~~~~~~ 110 (116)
T 1x4b_A 103 AVAREESG 110 (116)
T ss_dssp CSSCCCCC
T ss_pred CCCCccCC
Confidence 99876543
No 254
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.45 E-value=2.2e-13 Score=134.38 Aligned_cols=81 Identities=23% Similarity=0.303 Sum_probs=74.2
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
...++|||+|||..+++++|+++|++||.|..|+++.+ +++||||+|.+.++|++||+.||+..|.|++|+|.||
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999998643 5789999999999999999999999999999999999
Q ss_pred cCCchh
Q 002123 435 RPGGAR 440 (964)
Q Consensus 435 ~~k~~r 440 (964)
+++..+
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 876543
No 255
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.9e-13 Score=122.25 Aligned_cols=78 Identities=22% Similarity=0.361 Sum_probs=71.7
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCch
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~ 439 (964)
...++|||+|| ++++++|+++|++||.|.+|++. .+++||||+|.+.++|++|++.|||..|.|++|+|.+++++..
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 45679999996 89999999999999999999985 5799999999999999999999999999999999999988654
Q ss_pred h
Q 002123 440 R 440 (964)
Q Consensus 440 r 440 (964)
+
T Consensus 90 ~ 90 (97)
T 1x5p_A 90 L 90 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 256
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.45 E-value=2e-13 Score=126.37 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=72.4
Q ss_pred cCCcceEEEeccCCCC------cHHHHHHHhhccCceEEEEecC---CCCceEEEeeCCHHHHHHHHHHhCCceeCCc-e
Q 002123 359 DANQGTLVVFNLDSSV------STEELHQIFGIYGEIREIRDTQ---HKHNHKFIEFYDIRAAETALRTLNRSDVAGK-Q 428 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~v------TeedLrelFs~fG~I~sIri~~---~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr-~ 428 (964)
....++|||+|||..+ ++++|+++|++||.|.+|++.. .++|||||+|.+.++|.+|++.|||..|.|+ +
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 3446799999999999 7899999999999999999873 3689999999999999999999999999999 9
Q ss_pred EEEEeccCCc
Q 002123 429 IKLEASRPGG 438 (964)
Q Consensus 429 LkV~~A~~k~ 438 (964)
|+|.++...+
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999998643
No 257
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=7.6e-14 Score=132.25 Aligned_cols=80 Identities=18% Similarity=0.152 Sum_probs=72.0
Q ss_pred CCcceEEEeccCCC-CcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCC--ceeCCceEEEEeccC
Q 002123 360 ANQGTLVVFNLDSS-VSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR--SDVAGKQIKLEASRP 436 (964)
Q Consensus 360 ~~~~tLfV~NLp~~-vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG--~~I~Gr~LkV~~A~~ 436 (964)
.+.++|||+|||++ +++++|+++|++||.|.+|++++ .||||||+|.+.++|++|++.|++ ..|.|++|+|.+|+.
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 35679999999998 99999999999999999999875 589999999999999999998864 569999999999987
Q ss_pred Cchh
Q 002123 437 GGAR 440 (964)
Q Consensus 437 k~~r 440 (964)
+...
T Consensus 102 ~~~~ 105 (112)
T 1x4f_A 102 YKKL 105 (112)
T ss_dssp CSSS
T ss_pred cccc
Confidence 6543
No 258
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.45 E-value=1.8e-13 Score=132.91 Aligned_cols=78 Identities=21% Similarity=0.314 Sum_probs=72.7
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCce-EEEeeCCHHHHHHHHHHhCCceeCC--ceEEEEeccCC
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNH-KFIEFYDIRAAETALRTLNRSDVAG--KQIKLEASRPG 437 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGf-aFVeF~d~esA~kAL~~LNG~~I~G--r~LkV~~A~~k 437 (964)
..-.|||+||+..+|+++|+++|++||.|.+|++..+.++| |||+|.+.++|++|++.|||..|.| ++|+|+|++++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 34578999999999999999999999999999998877888 9999999999999999999999987 99999999986
Q ss_pred c
Q 002123 438 G 438 (964)
Q Consensus 438 ~ 438 (964)
.
T Consensus 107 ~ 107 (130)
T 3zzy_A 107 S 107 (130)
T ss_dssp S
T ss_pred c
Confidence 5
No 259
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.1e-13 Score=124.55 Aligned_cols=82 Identities=29% Similarity=0.450 Sum_probs=71.4
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEe-cCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri-~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
.....++|||+|||..+++++|+++|++||.|.-++. ....++||||+|.+.++|++|++.|||..|.|++|+|.++++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 3456789999999999999999999999999843322 234789999999999999999999999999999999999998
Q ss_pred Cch
Q 002123 437 GGA 439 (964)
Q Consensus 437 k~~ 439 (964)
+..
T Consensus 91 ~~~ 93 (101)
T 2fc9_A 91 RGS 93 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 260
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.2e-13 Score=125.50 Aligned_cols=78 Identities=28% Similarity=0.398 Sum_probs=71.6
Q ss_pred CCcceEEEeccCC-CCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCc
Q 002123 360 ANQGTLVVFNLDS-SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (964)
Q Consensus 360 ~~~~tLfV~NLp~-~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~ 438 (964)
...++|||+|||. .+++++|+++|++||.|.+|++. +|||||+|.+.++|++|++.|||..+.|++|+|.+++++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 4567999999998 99999999999999999999984 8999999999999999999999999999999999998765
Q ss_pred hh
Q 002123 439 AR 440 (964)
Q Consensus 439 ~r 440 (964)
..
T Consensus 85 ~~ 86 (96)
T 2kvi_A 85 RP 86 (96)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 261
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.45 E-value=9e-14 Score=124.41 Aligned_cols=76 Identities=16% Similarity=0.367 Sum_probs=71.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
...++|||+|||+++++++|+++|++| +|..+++. +++|||||+|.+.++|++|++.|+|..+.|++|.|.++..+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 356899999999999999999999999 99999884 89999999999999999999999999999999999998654
No 262
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.45 E-value=2.2e-13 Score=125.60 Aligned_cols=77 Identities=19% Similarity=0.332 Sum_probs=71.2
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
....++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..|.|++|+|.+|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 345689999999999999999999999999999998743 5789999999999999999999999999999999998
Q ss_pred c
Q 002123 435 R 435 (964)
Q Consensus 435 ~ 435 (964)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 263
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.44 E-value=1.6e-13 Score=137.02 Aligned_cols=85 Identities=20% Similarity=0.409 Sum_probs=75.7
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccce
Q 002123 271 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (964)
Q Consensus 271 ~~~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~ 345 (964)
+....+.++|||+|||+++|+++|+++|++||.|..|.+ +++++|||||+|.+.++|++||+.|+|..|.|++|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 345567799999999999999999999999999999976 577899999999999999999999999999999999
Q ss_pred eeecCCCCCC
Q 002123 346 IHYSIPKDNP 355 (964)
Q Consensus 346 V~~A~~k~~~ 355 (964)
|.|+.++...
T Consensus 146 V~~a~~~~~~ 155 (165)
T 1rk8_A 146 VDWCFVKGPK 155 (165)
T ss_dssp EEESEECC--
T ss_pred EEEecCCCCC
Confidence 9999876543
No 264
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2e-13 Score=126.25 Aligned_cols=80 Identities=21% Similarity=0.241 Sum_probs=72.9
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCc-eEEEEecC------CCCceEEEeeCCHHHHHHHHHHhC--CceeCCceEEE
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGE-IREIRDTQ------HKHNHKFIEFYDIRAAETALRTLN--RSDVAGKQIKL 431 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~-I~sIri~~------~skGfaFVeF~d~esA~kAL~~LN--G~~I~Gr~LkV 431 (964)
..++|||+|||..+++++|+++|++||. |.+|+++. .++|||||+|.+.++|++|++.|+ +..+.|++|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4679999999999999999999999998 99999872 468999999999999999999996 58999999999
Q ss_pred EeccCCchh
Q 002123 432 EASRPGGAR 440 (964)
Q Consensus 432 ~~A~~k~~r 440 (964)
.+|+++...
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999987653
No 265
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.44 E-value=1.9e-13 Score=127.73 Aligned_cols=80 Identities=26% Similarity=0.380 Sum_probs=73.4
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC--CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCc
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ--HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~--~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~ 438 (964)
..++|||+|||..+++++|+++|++||.|.+|++.. .++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 457999999999999999999999999999999864 468999999999999999999999999999999999998755
Q ss_pred hh
Q 002123 439 AR 440 (964)
Q Consensus 439 ~r 440 (964)
..
T Consensus 87 ~~ 88 (115)
T 3lqv_A 87 AF 88 (115)
T ss_dssp HT
T ss_pred hh
Confidence 43
No 266
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.7e-13 Score=127.41 Aligned_cols=79 Identities=9% Similarity=0.132 Sum_probs=72.3
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
....++|||+|||.++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+|+. +++..|+|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 445689999999999999999999999999999998753 68999999999999999999 9999999999999998
Q ss_pred cCCc
Q 002123 435 RPGG 438 (964)
Q Consensus 435 ~~k~ 438 (964)
..-.
T Consensus 87 ~~~~ 90 (103)
T 1s79_A 87 DDYF 90 (103)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 7633
No 267
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.2e-13 Score=129.55 Aligned_cols=81 Identities=11% Similarity=0.261 Sum_probs=73.7
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
....++|||+|||..+++++|+++|++||.|..|+++.+ ++|||||+|.+.++|++||+. ++..|+|+.|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 345679999999999999999999999999999998754 578999999999999999997 99999999999999
Q ss_pred ccCCchh
Q 002123 434 SRPGGAR 440 (964)
Q Consensus 434 A~~k~~r 440 (964)
+.++..+
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9987654
No 268
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.44 E-value=9.8e-14 Score=127.23 Aligned_cols=78 Identities=21% Similarity=0.331 Sum_probs=69.6
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC------CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~------skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
....++|||+|||.++++++|+++|++|| |.+|++..+ ++|||||+|.+.++|.+|+ .|||..|+|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 999998754 4899999999999999999 899999999999999
Q ss_pred eccCCc
Q 002123 433 ASRPGG 438 (964)
Q Consensus 433 ~A~~k~ 438 (964)
+++++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998764
No 269
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=5.9e-14 Score=133.59 Aligned_cols=79 Identities=11% Similarity=0.228 Sum_probs=70.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEE-E----ecCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI-Y----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~sv-k----itgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
.....++|||+|||+++|+++|+++|++||.|..+ . .+++++|||||+|.+.++|++||+ |++..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34567999999999999999999999999998652 2 268899999999999999999999 99999999999999
Q ss_pred ecCCC
Q 002123 348 YSIPK 352 (964)
Q Consensus 348 ~A~~k 352 (964)
++.++
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98653
No 270
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.8e-13 Score=121.65 Aligned_cols=80 Identities=23% Similarity=0.303 Sum_probs=72.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEE-e-cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCC
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-T-ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svk-i-tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~ 351 (964)
....++|||+|||+++|+++|+++|++||.|..|+ + ..+..|.|||+|.+.++|++|++.|+|..|.|++|.|.++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 34578999999999999999999999999999994 4 445566699999999999999999999999999999999988
Q ss_pred CC
Q 002123 352 KD 353 (964)
Q Consensus 352 k~ 353 (964)
++
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 271
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.44 E-value=3.3e-14 Score=134.68 Aligned_cols=77 Identities=22% Similarity=0.368 Sum_probs=70.9
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEecc
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (964)
..++|||+|||.++++++|+++|++||.|.+|++.. .++|||||+|.+.++|++|+ .|||..|+|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 457999999999999999999999999999998864 35889999999999999999 799999999999999998
Q ss_pred CCc
Q 002123 436 PGG 438 (964)
Q Consensus 436 ~k~ 438 (964)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 272
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.44 E-value=3e-13 Score=122.03 Aligned_cols=77 Identities=22% Similarity=0.382 Sum_probs=64.9
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCce--eCCceEEEEeccC
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSD--VAGKQIKLEASRP 436 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~--I~Gr~LkV~~A~~ 436 (964)
.....+|||+|||.++|+++|+++|++||.|.+|+++.+++|||||+|.+.++|++ |++.. +.|++|.|.+|.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 34568999999999999999999999999999999999999999999999999983 56665 4699999999998
Q ss_pred Cch
Q 002123 437 GGA 439 (964)
Q Consensus 437 k~~ 439 (964)
+..
T Consensus 84 k~~ 86 (89)
T 3d2w_A 84 KHN 86 (89)
T ss_dssp ---
T ss_pred CCc
Confidence 764
No 273
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.4e-13 Score=126.93 Aligned_cols=82 Identities=23% Similarity=0.296 Sum_probs=73.1
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCce----EEEEec-CCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEI----REIRDT-QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I----~sIri~-~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
....++|||+|||..+++++|+++|++||.| ..+++. ..++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456899999999999999999999999998 455543 45789999999999999999999999999999999999
Q ss_pred ccCCchh
Q 002123 434 SRPGGAR 440 (964)
Q Consensus 434 A~~k~~r 440 (964)
++++..+
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9987654
No 274
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.5e-13 Score=123.21 Aligned_cols=84 Identities=21% Similarity=0.370 Sum_probs=72.6
Q ss_pred CccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEe--cCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 357 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 357 ~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri--~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
......++|||+|||..+++++|+++|+.|+.|.-++. ...+++||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 34456789999999999999999999999976655543 2335789999999999999999999999999999999999
Q ss_pred cCCchh
Q 002123 435 RPGGAR 440 (964)
Q Consensus 435 ~~k~~r 440 (964)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 987654
No 275
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.43 E-value=2.1e-13 Score=129.21 Aligned_cols=77 Identities=19% Similarity=0.378 Sum_probs=71.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|+ .|+|..|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999976 6788999999999999999999 799999999999999997
Q ss_pred CCC
Q 002123 351 PKD 353 (964)
Q Consensus 351 ~k~ 353 (964)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 276
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.4e-13 Score=125.07 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=72.5
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceE-EEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCce----E
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIR-EIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQ----I 429 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~-sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~----L 429 (964)
...++|||+|||..+++++|+++|++||.|. +|+++.+ ++|||||+|.+.++|++|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3568999999999999999999999999999 9988654 4689999999999999999999999999999 9
Q ss_pred EEEeccCCc
Q 002123 430 KLEASRPGG 438 (964)
Q Consensus 430 kV~~A~~k~ 438 (964)
+|.||++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999998754
No 277
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.1e-13 Score=129.60 Aligned_cols=80 Identities=14% Similarity=0.278 Sum_probs=71.7
Q ss_pred CCCCCcEEEE--ecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCcc-----ccccce
Q 002123 273 GEHPSRTLFV--RNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL-----RRRKLD 345 (964)
Q Consensus 273 ~e~~srtLFV--gNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i-----~Gr~L~ 345 (964)
...+.++||| +||++++|+++|+++|++||+|..|.+ ...||||||+|.+.++|++|++.|||+.+ .|++|+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i-~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM-PPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEEC-CTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 4456899999 669999999999999999999999988 34689999999999999999999999988 689999
Q ss_pred eeecCCCC
Q 002123 346 IHYSIPKD 353 (964)
Q Consensus 346 V~~A~~k~ 353 (964)
|.|+....
T Consensus 100 v~~a~~~p 107 (114)
T 2cq2_A 100 LNFVEKVQ 107 (114)
T ss_dssp EEEESCCC
T ss_pred EEecccCc
Confidence 99987543
No 278
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.43 E-value=2.2e-13 Score=121.83 Aligned_cols=76 Identities=14% Similarity=0.317 Sum_probs=70.8
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCc
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 438 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~ 438 (964)
..++|||+|||..+++++|+++|++| .|.+|++. .++|||||+|.+.++|++|++.|||..++|++|+|.++..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 45789999999999999999999999 99999886 679999999999999999999999999999999999987643
No 279
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=126.54 Aligned_cols=82 Identities=26% Similarity=0.404 Sum_probs=74.4
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
.....++|||+|||..+++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++. ++..|.|++|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 3456789999999999999999999999999999998654 468999999999999999998 9999999999999
Q ss_pred eccCCchh
Q 002123 433 ASRPGGAR 440 (964)
Q Consensus 433 ~A~~k~~r 440 (964)
++.++..+
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 99987654
No 280
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.43 E-value=3.5e-13 Score=119.69 Aligned_cols=76 Identities=21% Similarity=0.357 Sum_probs=68.6
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
.....++|||+|||..+++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++ +++..|+|++|+|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 3446689999999999999999999999999999998643 47899999999999999996 68889999999999
Q ss_pred ec
Q 002123 433 AS 434 (964)
Q Consensus 433 ~A 434 (964)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 281
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1.4e-13 Score=124.87 Aligned_cols=78 Identities=19% Similarity=0.203 Sum_probs=69.9
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
...++|||+|||..+++++|+++|++||.|..++++. .++|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 4567999999999999999999999999997655432 35799999999999999999999999999999999998
Q ss_pred cCC
Q 002123 435 RPG 437 (964)
Q Consensus 435 ~~k 437 (964)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 864
No 282
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.8e-13 Score=125.35 Aligned_cols=79 Identities=9% Similarity=0.207 Sum_probs=70.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
.....++|||+|||+++|+++|+++|++||.| .|++ +++++|||||+|.+.++|++||+ ++++.|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34567899999999999999999999999955 7765 68899999999999999999995 899999999999999
Q ss_pred cCCCC
Q 002123 349 SIPKD 353 (964)
Q Consensus 349 A~~k~ 353 (964)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 283
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.42 E-value=1.7e-13 Score=136.56 Aligned_cols=81 Identities=10% Similarity=0.159 Sum_probs=72.9
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccC--ceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYG--EIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG--~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
..++|||+|||.++++++|+++|++|| .|.+|+++. .++|||||+|.+.++|++||+.|||..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 357999999999999999999999999 999999864 3688999999999999999999999999999999999
Q ss_pred ccCCchhh
Q 002123 434 SRPGGARR 441 (964)
Q Consensus 434 A~~k~~r~ 441 (964)
|.++..+.
T Consensus 134 a~~~~~~~ 141 (156)
T 3n9u_C 134 ATRQNLSQ 141 (156)
T ss_dssp CCHHHHHH
T ss_pred cCCCcchh
Confidence 98865443
No 284
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=5.3e-13 Score=120.66 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=71.7
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEE-ecCC-CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCC
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIR-DTQH-KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIr-i~~~-skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k 437 (964)
...++|||+|||..+++++|+++|++||.|.+|+ ++.+ ..+.|||+|.+.++|++|++.|||..|.|++|+|.++.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 3467999999999999999999999999999995 6654 3456999999999999999999999999999999999987
Q ss_pred c
Q 002123 438 G 438 (964)
Q Consensus 438 ~ 438 (964)
+
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 285
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.42 E-value=3.6e-13 Score=125.71 Aligned_cols=82 Identities=21% Similarity=0.362 Sum_probs=70.9
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
.....++|||+|||.++++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.+ +..|+|+.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3445689999999999999999999999999999999754 5899999999999999999976 599999999999
Q ss_pred eccCCchh
Q 002123 433 ASRPGGAR 440 (964)
Q Consensus 433 ~A~~k~~r 440 (964)
++.++..+
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99987643
No 286
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.42 E-value=5.9e-13 Score=127.96 Aligned_cols=77 Identities=25% Similarity=0.405 Sum_probs=70.6
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
.....++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..|+|++|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3446789999999999999999999999999999998654 68999999999999999999999999999999999
Q ss_pred ec
Q 002123 433 AS 434 (964)
Q Consensus 433 ~A 434 (964)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 287
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.42 E-value=2.9e-13 Score=131.63 Aligned_cols=82 Identities=20% Similarity=0.380 Sum_probs=73.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEE--------EE--ecCCccceEEEEeCCHHHHHHHHHHccCCcccccc
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRT--------IY--TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK 343 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~s--------vk--itgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~ 343 (964)
..++++|||+|||+++|+++|+++|++||.|.. ++ .+++++|||||+|.+.++|++|++.|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 456799999999999999999999999998765 32 37899999999999999999999999999999999
Q ss_pred ceeeecCCCCCC
Q 002123 344 LDIHYSIPKDNP 355 (964)
Q Consensus 344 L~V~~A~~k~~~ 355 (964)
|.|.++.+...+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999775443
No 288
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=9.1e-14 Score=130.57 Aligned_cols=80 Identities=14% Similarity=0.173 Sum_probs=72.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcE-EEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDI-RTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I-~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
...+.++|||+|||+++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++||+. ++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 34567999999999999999999999999999 66765 588999999999999999999986 9999999999999
Q ss_pred ecCCCC
Q 002123 348 YSIPKD 353 (964)
Q Consensus 348 ~A~~k~ 353 (964)
++.++.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987543
No 289
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=7.5e-13 Score=119.69 Aligned_cols=81 Identities=17% Similarity=0.308 Sum_probs=70.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCC
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 353 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~ 353 (964)
....++|||+|||.++|+++|+++|++||+|..|.+......||||+|.+.++|++|++ |++..|.|+.|.|.++.++.
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 34568999999999999999999999999999985422221299999999999999999 99999999999999997765
Q ss_pred CC
Q 002123 354 NP 355 (964)
Q Consensus 354 ~~ 355 (964)
..
T Consensus 84 ~~ 85 (94)
T 2e5g_A 84 FQ 85 (94)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 290
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.42 E-value=1.7e-13 Score=118.32 Aligned_cols=70 Identities=13% Similarity=0.276 Sum_probs=65.6
Q ss_pred eEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 364 tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
+|||+|||.++++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++ |||..|+|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999998653 57899999999999999998 9999999999999986
No 291
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=5e-13 Score=124.76 Aligned_cols=79 Identities=16% Similarity=0.269 Sum_probs=71.9
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCcee--------CC
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDV--------AG 426 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I--------~G 426 (964)
....++|||+|||..+++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++.|||..| .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 345679999999999999999999999999999998654 578999999999999999999999999 58
Q ss_pred ceEEEEeccCC
Q 002123 427 KQIKLEASRPG 437 (964)
Q Consensus 427 r~LkV~~A~~k 437 (964)
++|.|.||.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999875
No 292
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.41 E-value=1.3e-13 Score=124.24 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=68.1
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEecc
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (964)
..++|||+|||.++++++|+++|++||.|..++++. .+++||||+|.+.++|++|++.|||..|.|++|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 457999999999999999999999999998766543 357899999999999999999999999999999999986
Q ss_pred C
Q 002123 436 P 436 (964)
Q Consensus 436 ~ 436 (964)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 293
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=4.3e-13 Score=123.10 Aligned_cols=76 Identities=17% Similarity=0.321 Sum_probs=67.9
Q ss_pred CCCcE-EEEecCCCCCCHHH----HHHhhccC-CcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 275 HPSRT-LFVRNINSNVEDSE----LKALFEQF-GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 275 ~~srt-LFVgNLP~~vTEed----LrelFs~f-G~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
.++.+ |||+|||.++++++ |+++|++| |+|.+| ++ |||||.|.+.++|++|++.|+|..+.||+|+|.|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 34566 99999999999988 55899999 599998 33 9999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 002123 349 SIPKDNP 355 (964)
Q Consensus 349 A~~k~~~ 355 (964)
|..+.+.
T Consensus 81 A~~~sd~ 87 (96)
T 2diu_A 81 TPKNREL 87 (96)
T ss_dssp SCCSCCC
T ss_pred cCCCcce
Confidence 9887654
No 294
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.41 E-value=7.9e-14 Score=127.67 Aligned_cols=81 Identities=20% Similarity=0.483 Sum_probs=72.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
.....++|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ ++..+.|+.|.|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 4456799999999999999999999999999999986 57789999999999999999998 99999999999999
Q ss_pred cCCCCCC
Q 002123 349 SIPKDNP 355 (964)
Q Consensus 349 A~~k~~~ 355 (964)
+.++...
T Consensus 83 a~~~~~~ 89 (102)
T 2xs2_A 83 AIRKQNL 89 (102)
T ss_dssp EEECC--
T ss_pred CCcCcch
Confidence 9876543
No 295
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.12 E-value=1.8e-14 Score=135.37 Aligned_cols=83 Identities=22% Similarity=0.370 Sum_probs=75.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEE--------EEe-----cCCccceEEEEeCCHHHHHHHHHHccCCcc
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT--------IYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPL 339 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~s--------vki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i 339 (964)
...+.++|||+|||.++++++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++.|++..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3457799999999999999999999999999988 654 477899999999999999999999999999
Q ss_pred ccccceeeecCCCCCC
Q 002123 340 RRRKLDIHYSIPKDNP 355 (964)
Q Consensus 340 ~Gr~L~V~~A~~k~~~ 355 (964)
.|++|.|.++.++...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999887654
No 296
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.41 E-value=3.9e-13 Score=121.31 Aligned_cols=78 Identities=22% Similarity=0.467 Sum_probs=63.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCc--cccccceeeecC
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKP--LRRRKLDIHYSI 350 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~--i~Gr~L~V~~A~ 350 (964)
...+.++|||+|||+++|+++|+++|++||+|.+|++...+||||||+|.+.++|++ +++.. +.|++|.|.++.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 456789999999999999999999999999999999977799999999999999984 45554 458999999998
Q ss_pred CCCC
Q 002123 351 PKDN 354 (964)
Q Consensus 351 ~k~~ 354 (964)
++..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 7654
No 297
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=131.94 Aligned_cols=81 Identities=19% Similarity=0.351 Sum_probs=73.0
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEE--EEecCC-----CCceEEEeeCCHHHHHHHHHHhCCc----eeCC
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE--IRDTQH-----KHNHKFIEFYDIRAAETALRTLNRS----DVAG 426 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~s--Iri~~~-----skGfaFVeF~d~esA~kAL~~LNG~----~I~G 426 (964)
.....++|||+|||.++++++|+++|++||.|.. |+++.+ ++|||||+|.+. +|.+|++.|||. .|.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3455679999999999999999999999999977 888654 589999999999 999999999999 9999
Q ss_pred ceEEEEeccCCch
Q 002123 427 KQIKLEASRPGGA 439 (964)
Q Consensus 427 r~LkV~~A~~k~~ 439 (964)
++|+|.+++++..
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999988653
No 298
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.41 E-value=6.3e-13 Score=133.79 Aligned_cols=81 Identities=22% Similarity=0.303 Sum_probs=72.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-cCCccceEEEEeCCHHHHHHHHHHccCCcccc--ccceeeecC
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSI 350 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-tgksRGfaFV~F~d~esA~kAl~~Lng~~i~G--r~L~V~~A~ 350 (964)
.....+|||+||++.+|+++|+++|++||+|+.|++ +.+.+|||||+|.+.++|++|++.|||..|.| ++|+|.|+.
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 334577999999999999999999999999999987 45578999999999999999999999999966 999999998
Q ss_pred CCCC
Q 002123 351 PKDN 354 (964)
Q Consensus 351 ~k~~ 354 (964)
++..
T Consensus 123 ~~~l 126 (164)
T 1sjr_A 123 LTSL 126 (164)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 8753
No 299
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.41 E-value=1.2e-13 Score=119.21 Aligned_cols=70 Identities=20% Similarity=0.476 Sum_probs=65.5
Q ss_pred EEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 279 TLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 279 tLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
+|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++ +++..+.|++|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 6999999999999999999999999999976 47889999999999999999998 5899999999999875
No 300
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.40 E-value=4.2e-13 Score=135.10 Aligned_cols=78 Identities=21% Similarity=0.304 Sum_probs=71.3
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-CCceEEEeeCCHHHHHHHHHHhCCceeCC--ceEEEEeccCC
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-KHNHKFIEFYDIRAAETALRTLNRSDVAG--KQIKLEASRPG 437 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-skGfaFVeF~d~esA~kAL~~LNG~~I~G--r~LkV~~A~~k 437 (964)
...+|||+||++.+++++|+++|++||+|++|++..+ +++||||+|.+.++|++|++.|||..|.| ++|+|+|++++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 3468999999999999999999999999999998754 57899999999999999999999999955 99999999986
Q ss_pred c
Q 002123 438 G 438 (964)
Q Consensus 438 ~ 438 (964)
.
T Consensus 125 ~ 125 (164)
T 1sjr_A 125 S 125 (164)
T ss_dssp S
T ss_pred c
Confidence 4
No 301
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.40 E-value=1.7e-13 Score=125.21 Aligned_cols=79 Identities=22% Similarity=0.251 Sum_probs=70.5
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEec-----CCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~-----~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
....+|||+|||.++++++|+++|++||.|.. +++ ..++|||||+|.+.++|++|++ |||..|.|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45679999999999999999999999998876 332 3478999999999999999999 9999999999999999
Q ss_pred cCCchh
Q 002123 435 RPGGAR 440 (964)
Q Consensus 435 ~~k~~r 440 (964)
+++..+
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 987654
No 302
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.1e-13 Score=122.45 Aligned_cols=76 Identities=20% Similarity=0.300 Sum_probs=69.6
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEecc
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (964)
..++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..|.|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 4579999999999999999999999999999998654 48999999999999999999999999999999987765
Q ss_pred C
Q 002123 436 P 436 (964)
Q Consensus 436 ~ 436 (964)
.
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 303
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.40 E-value=9.4e-14 Score=124.16 Aligned_cols=76 Identities=20% Similarity=0.414 Sum_probs=67.5
Q ss_pred ceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCC
Q 002123 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (964)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k 437 (964)
++|||+|||.++++++|+++|++||.|.+|++..+ ++|||||+|.+.+ |++|++.|||..++|++|+|.+|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999998743 5889999999999 99999999999999999999999886
Q ss_pred ch
Q 002123 438 GA 439 (964)
Q Consensus 438 ~~ 439 (964)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 304
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.40 E-value=6.5e-13 Score=128.01 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=69.2
Q ss_pred ceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCce-EEEeeCCHHHHHHHHHHhCCceeCC--ceEEEEeccCCc
Q 002123 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNH-KFIEFYDIRAAETALRTLNRSDVAG--KQIKLEASRPGG 438 (964)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGf-aFVeF~d~esA~kAL~~LNG~~I~G--r~LkV~~A~~k~ 438 (964)
-.|||+||+..+++++|+++|++||.|++|++..+ .|| |||+|.+.++|.+|++.|||..|.| ++|+|.+|+++.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 35789999999999999999999999999998765 586 9999999999999999999999987 699999999865
No 305
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=8.5e-13 Score=121.00 Aligned_cols=80 Identities=14% Similarity=0.316 Sum_probs=71.7
Q ss_pred ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 358 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
.....++|||+|||..+++++|+++|++||.|..|+++.+ ++|||||+|.+.++|++|++ ++..|+|+.|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 3445679999999999999999999999999999998654 47899999999999999999 5789999999999
Q ss_pred eccCCch
Q 002123 433 ASRPGGA 439 (964)
Q Consensus 433 ~A~~k~~ 439 (964)
++.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqg_A 89 LPNSKQS 95 (103)
T ss_dssp CCCTTCC
T ss_pred ecCCCCc
Confidence 9998764
No 306
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=5.1e-13 Score=119.74 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=70.8
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEecc
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (964)
....+|||+|||.++++++|+++|++| .|.+|+++.+ ++|||||+|.+.++|++|++ |||..|+|+.|+|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 456799999999999999999999999 9999988653 57899999999999999999 99999999999999998
Q ss_pred CCc
Q 002123 436 PGG 438 (964)
Q Consensus 436 ~k~ 438 (964)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 307
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.5e-13 Score=127.33 Aligned_cols=78 Identities=19% Similarity=0.197 Sum_probs=70.6
Q ss_pred CCcceEEE--eccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCcee-----CCceEEEE
Q 002123 360 ANQGTLVV--FNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDV-----AGKQIKLE 432 (964)
Q Consensus 360 ~~~~tLfV--~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I-----~Gr~LkV~ 432 (964)
.+..+||| +||+.++++++|+++|++||.|.+|.+.. .||||||+|.+.++|++|++.|||+.| .|++|+|.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 34678999 55999999999999999999999998875 489999999999999999999999998 78999999
Q ss_pred eccCCc
Q 002123 433 ASRPGG 438 (964)
Q Consensus 433 ~A~~k~ 438 (964)
+++...
T Consensus 102 ~a~~~p 107 (114)
T 2cq2_A 102 FVEKVQ 107 (114)
T ss_dssp EESCCC
T ss_pred ecccCc
Confidence 998543
No 308
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.40 E-value=4.5e-13 Score=126.25 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=67.5
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCce-----EEEEecc
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ-----IKLEASR 435 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~-----LkV~~A~ 435 (964)
...+|||+|||.++++++|+++|++||+|.+|+++.+ +||||+|.+.++|++||+.|||..|+|++ |+|..+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 4579999999999999999999999999999999876 99999999999999999999999999998 7777776
Q ss_pred CCc
Q 002123 436 PGG 438 (964)
Q Consensus 436 ~k~ 438 (964)
++.
T Consensus 93 ~~~ 95 (115)
T 3beg_B 93 PRS 95 (115)
T ss_dssp ---
T ss_pred CCC
Confidence 644
No 309
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.40 E-value=2.1e-13 Score=126.72 Aligned_cols=79 Identities=10% Similarity=0.053 Sum_probs=71.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCc---EEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccce
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGD---IRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~---I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~ 345 (964)
.....++|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++||+ +++..+.|+.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3456799999999999999999999999998 788876 47899999999999999999999 999999999999
Q ss_pred eeecCCC
Q 002123 346 IHYSIPK 352 (964)
Q Consensus 346 V~~A~~k 352 (964)
|.++.++
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998653
No 310
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.40 E-value=4.5e-13 Score=130.10 Aligned_cols=79 Identities=25% Similarity=0.365 Sum_probs=72.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccce-EEEEeCCHHHHHHHHHHccCCcccc--ccceeeecCCC
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGF-VMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIPK 352 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGf-aFV~F~d~esA~kAl~~Lng~~i~G--r~L~V~~A~~k 352 (964)
.-..|||+||++.+|+++|+++|++||+|.+|++..+.+|| |||+|.+.++|++|++.|||+.|.| +.|+|+|+.++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 34677899999999999999999999999999886677888 9999999999999999999999988 99999999876
Q ss_pred CC
Q 002123 353 DN 354 (964)
Q Consensus 353 ~~ 354 (964)
.-
T Consensus 107 ~l 108 (130)
T 3zzy_A 107 SL 108 (130)
T ss_dssp SC
T ss_pred ce
Confidence 43
No 311
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.40 E-value=2.9e-13 Score=128.24 Aligned_cols=77 Identities=8% Similarity=0.114 Sum_probs=70.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCc---EEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGD---IRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~---I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
....++|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++||+ ++++.|.|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 456799999999999999999999999998 777765 57889999999999999999999 9999999999999
Q ss_pred eecCC
Q 002123 347 HYSIP 351 (964)
Q Consensus 347 ~~A~~ 351 (964)
.++.+
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98854
No 312
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.39 E-value=2.7e-13 Score=119.26 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=64.2
Q ss_pred ceEEEeccCCCC------cHHHHHHHhhccCceEEEEecC---CCCceEEEeeCCHHHHHHHHHHhCCceeCCc-eEEE
Q 002123 363 GTLVVFNLDSSV------STEELHQIFGIYGEIREIRDTQ---HKHNHKFIEFYDIRAAETALRTLNRSDVAGK-QIKL 431 (964)
Q Consensus 363 ~tLfV~NLp~~v------TeedLrelFs~fG~I~sIri~~---~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr-~LkV 431 (964)
++|||+|||..+ ++++|+++|++||.|.+|++.+ .++|||||+|.+.++|++|++.|||..++|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 7799999999999999999874 3689999999999999999999999999999 8876
No 313
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=3e-13 Score=127.00 Aligned_cols=82 Identities=11% Similarity=0.131 Sum_probs=73.4
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCce-EEEEecC----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEI-REIRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I-~sIri~~----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
....++|||+|||.++++++|+++|++||.| ..|+++. .++|||||+|.+.++|++||+. |+..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3456799999999999999999999999999 7888864 3689999999999999999996 99999999999999
Q ss_pred ccCCchhh
Q 002123 434 SRPGGARR 441 (964)
Q Consensus 434 A~~k~~r~ 441 (964)
+.++..+.
T Consensus 91 a~~~~~~~ 98 (114)
T 2cpy_A 91 VTLEDMRE 98 (114)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHH
Confidence 98876544
No 314
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=2.7e-13 Score=117.36 Aligned_cols=71 Identities=20% Similarity=0.369 Sum_probs=66.4
Q ss_pred ceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
++|||+|||.++++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.++ ..++|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999988653 57899999999999999999999 9999999999987
No 315
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=7.7e-13 Score=119.60 Aligned_cols=78 Identities=15% Similarity=0.293 Sum_probs=68.8
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCch
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~ 439 (964)
..++|||+|||.++++++|+++|++||.|.+|.+......||||+|.+.++|++|++ |||..|+|+.|+|.++.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 457999999999999999999999999999984433322299999999999999999 999999999999999887654
No 316
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.39 E-value=2.9e-13 Score=142.91 Aligned_cols=76 Identities=17% Similarity=0.262 Sum_probs=70.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCC--cEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFG--DIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG--~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
..++|||+|||+++|+++|+++|++|| +|+.|++ ++++||||||+|.+.++|++||+.|+++.|.|++|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 9999986 688999999999999999999999999999999999999
Q ss_pred cCC
Q 002123 349 SIP 351 (964)
Q Consensus 349 A~~ 351 (964)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 317
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.38 E-value=4.9e-13 Score=118.40 Aligned_cols=72 Identities=18% Similarity=0.393 Sum_probs=67.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccC----C-------cEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCcccccc
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQF----G-------DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK 343 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~f----G-------~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~ 343 (964)
.+.++|||+|||+++|+++|+++|++| | +|.++++ .+.+|||||+|.+.++|++|+ .|+|..+.|+.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~-~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-CSSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe-cCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 457999999999999999999999999 8 9999998 566999999999999999999 99999999999
Q ss_pred ceeee
Q 002123 344 LDIHY 348 (964)
Q Consensus 344 L~V~~ 348 (964)
|.|.+
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99974
No 318
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.38 E-value=2.3e-13 Score=133.01 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=71.2
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCc---eEEEEecC----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGE---IREIRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~---I~sIri~~----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
....+|||+|||+++|+++|+++|++||. |.+|+++. .++|||||+|.+.++|++||+ ||+..|+|+.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 34679999999999999999999999999 78888764 357899999999999999999 99999999999999
Q ss_pred eccCCch
Q 002123 433 ASRPGGA 439 (964)
Q Consensus 433 ~A~~k~~ 439 (964)
++.+++.
T Consensus 121 ~a~~~e~ 127 (136)
T 2hgl_A 121 KSHRTEM 127 (136)
T ss_dssp ECCHHHH
T ss_pred ECChHHH
Confidence 9976553
No 319
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.38 E-value=7.3e-13 Score=124.83 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=65.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCcccccc-----ceeee
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK-----LDIHY 348 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~-----L~V~~ 348 (964)
....++|||+|||+++|+++|+++|++||+|..|++... |||||+|.+.++|++||+.|||+.|.|++ |.|..
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 345789999999999999999999999999999998433 99999999999999999999999999999 55555
Q ss_pred cCCC
Q 002123 349 SIPK 352 (964)
Q Consensus 349 A~~k 352 (964)
+.++
T Consensus 91 ~~~~ 94 (115)
T 3beg_B 91 DGPR 94 (115)
T ss_dssp CC--
T ss_pred CCCC
Confidence 5443
No 320
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=3.8e-13 Score=120.01 Aligned_cols=79 Identities=22% Similarity=0.449 Sum_probs=68.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCC
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~ 354 (964)
.++++|||+|||.++|+++|+++|++||+|..|++...+||||||+|.+.++|++|+. ....+.|++|.|.++.++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCCC
Confidence 4579999999999999999999999999999999977789999999999999986543 13456899999999988765
Q ss_pred C
Q 002123 355 P 355 (964)
Q Consensus 355 ~ 355 (964)
.
T Consensus 81 ~ 81 (88)
T 1wf0_A 81 S 81 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 321
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.38 E-value=2.2e-13 Score=133.07 Aligned_cols=78 Identities=8% Similarity=0.089 Sum_probs=70.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCc---EEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccce
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGD---IRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~---I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~ 345 (964)
.....++|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++||+ |+++.|.||.|.
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 3456799999999999999999999999999 777765 47899999999999999999999 999999999999
Q ss_pred eeecCC
Q 002123 346 IHYSIP 351 (964)
Q Consensus 346 V~~A~~ 351 (964)
|.++.+
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 998854
No 322
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1e-12 Score=121.47 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=70.8
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEE-EEecC----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE-IRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~s-Iri~~----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
....+|||+|||.++++++|+++|++||.|.. |+++. .++|||||+|.+.++|++||+. |+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 45679999999999999999999999999987 87753 4689999999999999999996 999999999999998
Q ss_pred cCCc
Q 002123 435 RPGG 438 (964)
Q Consensus 435 ~~k~ 438 (964)
.+++
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 8755
No 323
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.37 E-value=8.4e-13 Score=134.12 Aligned_cols=80 Identities=25% Similarity=0.446 Sum_probs=74.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999987 477899999999999999999999999999999999999
Q ss_pred cCCC
Q 002123 349 SIPK 352 (964)
Q Consensus 349 A~~k 352 (964)
+.+.
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 9764
No 324
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.37 E-value=9.4e-13 Score=125.67 Aligned_cols=79 Identities=18% Similarity=0.326 Sum_probs=72.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCC
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 352 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k 352 (964)
...+.++|||+|| ++|+++|+++|++||+|..|++ .+++|||||+|.+.++|++|++.|+|..+.|++|.|.++.++
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i-~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 3456899999996 7999999999999999999998 589999999999999999999999999999999999999876
Q ss_pred CC
Q 002123 353 DN 354 (964)
Q Consensus 353 ~~ 354 (964)
..
T Consensus 112 ~~ 113 (121)
T 2bz2_A 112 PM 113 (121)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 325
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.37 E-value=1e-12 Score=139.96 Aligned_cols=105 Identities=17% Similarity=0.189 Sum_probs=79.8
Q ss_pred cCCccccccceeeecCCCCCCCCccCCcceEEEeccCCCC---------cHHHHHHHhhccCceEEEEecCCCCceEEEe
Q 002123 335 QNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSV---------STEELHQIFGIYGEIREIRDTQHKHNHKFIE 405 (964)
Q Consensus 335 ng~~i~Gr~L~V~~A~~k~~~~~~~~~~~tLfV~NLp~~v---------TeedLrelFs~fG~I~sIri~~~skGfaFVe 405 (964)
+...+.|+.....+..............++|||+||+..+ ++++|+++|++||.|++|+|+. ++|||||+
T Consensus 107 ~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-~kG~AFV~ 185 (240)
T 3u1l_A 107 EVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-SKNCGFVK 185 (240)
T ss_dssp SSBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-GGTEEEEE
T ss_pred cCcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-CCCEEEEE
Confidence 3445556665555444333223334567899999999998 7999999999999999999986 59999999
Q ss_pred eCCHHHHHHHHHHhCCcee------------CCceEEEEeccCCchh
Q 002123 406 FYDIRAAETALRTLNRSDV------------AGKQIKLEASRPGGAR 440 (964)
Q Consensus 406 F~d~esA~kAL~~LNG~~I------------~Gr~LkV~~A~~k~~r 440 (964)
|.+.++|+.|+++|+|..| .|+.|.|.||..+...
T Consensus 186 F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 186 FKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp ESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred eCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 9999999999999999999 8999999999976543
No 326
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.36 E-value=1.4e-12 Score=125.73 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=68.3
Q ss_pred cEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccce-EEEEeCCHHHHHHHHHHccCCcccc--ccceeeecCCCCC
Q 002123 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGF-VMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIPKDN 354 (964)
Q Consensus 278 rtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGf-aFV~F~d~esA~kAl~~Lng~~i~G--r~L~V~~A~~k~~ 354 (964)
..|||+||++.+|+++|+++|++||+|.+|++..+ .|| |||+|.+.++|++|++.|||..|.| ++|+|.|+.++..
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 34679999999999999999999999999988444 496 9999999999999999999999987 6999999987753
No 327
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.36 E-value=3.8e-13 Score=127.41 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=70.8
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCc---eEEEEecC----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGE---IREIRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~---I~sIri~~----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
....+|||+|||.++++++|+++|++||. |..|+++. .++|||||+|.+.++|++||+ ||+..|+|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 35678999999999999999999999999 88888764 357899999999999999999 99999999999999
Q ss_pred eccCCc
Q 002123 433 ASRPGG 438 (964)
Q Consensus 433 ~A~~k~ 438 (964)
++.+++
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997655
No 328
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=4.4e-13 Score=119.59 Aligned_cols=76 Identities=16% Similarity=0.310 Sum_probs=67.8
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCc--eeCCceEEEEeccCCc
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRS--DVAGKQIKLEASRPGG 438 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~--~I~Gr~LkV~~A~~k~ 438 (964)
..++|||+|||.++++++|+++|++||.|.+|+++.+++|||||+|.+.++|++| ++. .+.|++|+|.++.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL----CGEDLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEECCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEEecCCCC
Confidence 4579999999999999999999999999999999988999999999999999764 444 4589999999999876
Q ss_pred hh
Q 002123 439 AR 440 (964)
Q Consensus 439 ~r 440 (964)
.+
T Consensus 80 ~~ 81 (88)
T 1wf0_A 80 NS 81 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 329
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.35 E-value=2.6e-13 Score=133.15 Aligned_cols=121 Identities=10% Similarity=0.042 Sum_probs=70.0
Q ss_pred cceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCCCCCccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEE
Q 002123 314 RGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIR 393 (964)
Q Consensus 314 RGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~~~~~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIr 393 (964)
+|+||..|.-++.+..++..+... ..|....-.... ...........+|||+|||.++|+++|+++|++|| |.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~--~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~ 76 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGD--SEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVH 76 (139)
T ss_dssp -----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEE
T ss_pred CCcccccccCccccchhcccchhc-cCCCCCCCCCCC--cccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE
Confidence 367888888888877777655433 222222111111 11112234457999999999999999999999999 66898
Q ss_pred ecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCch
Q 002123 394 DTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (964)
Q Consensus 394 i~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~ 439 (964)
|+.+ ++|||||+|.+.++|++|| .+|+..|+|+.|+|.++.+++.
T Consensus 77 i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 77 IEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 8753 6889999999999999999 6999999999999999987654
No 330
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=8.4e-13 Score=124.19 Aligned_cols=76 Identities=7% Similarity=0.177 Sum_probs=68.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
....++|||+|||+++|+++|+++|++| .|..|++ .++++|||||+|.+.++|++|| .++++.|.||.|.|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3345899999999999999999999999 8888876 5788999999999999999999 59999999999999887
Q ss_pred CC
Q 002123 350 IP 351 (964)
Q Consensus 350 ~~ 351 (964)
.+
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 53
No 331
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.35 E-value=2e-12 Score=114.37 Aligned_cols=71 Identities=20% Similarity=0.369 Sum_probs=66.8
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhcc----C-------ceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceE
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIY----G-------EIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~f----G-------~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~L 429 (964)
..++|||+|||.++++++|+++|++| | .|.++++..+ +|||||+|.+.++|++|+ .|||..+.|++|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-SSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-CcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 46799999999999999999999999 8 9999998865 899999999999999999 899999999999
Q ss_pred EEEe
Q 002123 430 KLEA 433 (964)
Q Consensus 430 kV~~ 433 (964)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9974
No 332
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.35 E-value=4e-13 Score=124.76 Aligned_cols=80 Identities=13% Similarity=0.085 Sum_probs=72.2
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCc---eEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGE---IREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~---I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
....+|||+|||.++++++|+++|+.||. |.+|+++.+ ++|||||+|.+.++|++||+ ||+..|+|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 45679999999999999999999999998 888988643 68899999999999999999 99999999999999
Q ss_pred eccCCchh
Q 002123 433 ASRPGGAR 440 (964)
Q Consensus 433 ~A~~k~~r 440 (964)
++.+++..
T Consensus 88 ~a~~~~~~ 95 (107)
T 2lmi_A 88 EINNEDVD 95 (107)
T ss_dssp ECCHHHHH
T ss_pred ECCHHHHH
Confidence 99876543
No 333
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.35 E-value=5.1e-13 Score=131.04 Aligned_cols=80 Identities=9% Similarity=0.190 Sum_probs=70.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
.....++|||+|||+++|+++|+++|++|| |..|++ .++++|||||+|.+.++|++|| .++++.|.|+.|.|..
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 445678999999999999999999999999 668876 5788999999999999999999 7999999999999999
Q ss_pred cCCCCC
Q 002123 349 SIPKDN 354 (964)
Q Consensus 349 A~~k~~ 354 (964)
+.++..
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 876543
No 334
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.34 E-value=2.1e-12 Score=125.52 Aligned_cols=81 Identities=26% Similarity=0.359 Sum_probs=71.3
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEE--------EEe--cCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceE
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE--------IRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~s--------Iri--~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~L 429 (964)
...++|||+|||..+++++|+++|++||.|.. |++ .+.++|||||+|.+.++|.+|++.|||..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 35679999999999999999999999998865 332 35678999999999999999999999999999999
Q ss_pred EEEeccCCchh
Q 002123 430 KLEASRPGGAR 440 (964)
Q Consensus 430 kV~~A~~k~~r 440 (964)
+|.+|++...+
T Consensus 123 ~V~~a~~~~~~ 133 (143)
T 3egn_A 123 VVQFARSARPK 133 (143)
T ss_dssp EEEECCCSCC-
T ss_pred EEEECCCCCCc
Confidence 99999876544
No 335
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.7e-12 Score=122.13 Aligned_cols=75 Identities=11% Similarity=0.179 Sum_probs=68.4
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
...+|||+|||+++++++|+++|++| .|.+|+|+. .++|||||+|.+.++|++|| .||+..|+||.|.|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 34699999999999999999999999 899999874 36899999999999999999 5999999999999998875
Q ss_pred C
Q 002123 437 G 437 (964)
Q Consensus 437 k 437 (964)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 336
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=2.8e-13 Score=128.87 Aligned_cols=80 Identities=11% Similarity=0.113 Sum_probs=70.1
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEec-----CCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~-----~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
....+|||+|||.++++++|+++|++||.|..+.++ +.++|||||+|.+.++|++||+ |||..|+|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 345799999999999999999999999998763322 2468999999999999999999 9999999999999999
Q ss_pred cCCchh
Q 002123 435 RPGGAR 440 (964)
Q Consensus 435 ~~k~~r 440 (964)
.+++..
T Consensus 102 ~~~~~~ 107 (124)
T 1wel_A 102 TKKGML 107 (124)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 886643
No 337
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.01 E-value=1.1e-13 Score=130.03 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=73.5
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEE--------EEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCC
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE--------IRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAG 426 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~s--------Iri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~G 426 (964)
...++|||+|||..+++++|+++|++||.|.. |+++.+ ++|||||+|.+.++|++|++.|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45679999999999999999999999999998 777643 57899999999999999999999999999
Q ss_pred ceEEEEeccCCchh
Q 002123 427 KQIKLEASRPGGAR 440 (964)
Q Consensus 427 r~LkV~~A~~k~~r 440 (964)
++|+|.+++++..+
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999987643
No 338
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.33 E-value=2.1e-12 Score=123.22 Aligned_cols=78 Identities=22% Similarity=0.361 Sum_probs=71.2
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCch
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~ 439 (964)
...++|||+|| ++++++|+++|++||.|.+|++. .++|||||+|.+.++|++|++.|||..|.|++|+|.+++++..
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 45679999996 69999999999999999999986 5799999999999999999999999999999999999998754
Q ss_pred h
Q 002123 440 R 440 (964)
Q Consensus 440 r 440 (964)
.
T Consensus 114 ~ 114 (121)
T 2bz2_A 114 L 114 (121)
T ss_dssp -
T ss_pred C
Confidence 3
No 339
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.33 E-value=1.5e-12 Score=125.70 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=68.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccCCcEE--EEEe----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 273 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIR--TIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vTEedLrelFs~fG~I~--svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
.....++|||+|||+++|+++|+++|++| .|. .|++ .++++|||||+|.+.++|++||+ +++..|.||.|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 34567899999999999999999999999 566 7875 47899999999999999999998 5789999999999
Q ss_pred eecCC
Q 002123 347 HYSIP 351 (964)
Q Consensus 347 ~~A~~ 351 (964)
.++.+
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98854
No 340
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.2e-12 Score=121.19 Aligned_cols=77 Identities=10% Similarity=0.161 Sum_probs=68.8
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEecc
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (964)
....+|||+|||.++++++|+++|++||.| +|+++.+ ++|||||+|.+.++|++||+ +|+..|+|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 456799999999999999999999999955 8887643 57899999999999999995 89999999999999988
Q ss_pred CCc
Q 002123 436 PGG 438 (964)
Q Consensus 436 ~k~ 438 (964)
+.+
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 341
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.32 E-value=7.3e-13 Score=114.21 Aligned_cols=70 Identities=17% Similarity=0.340 Sum_probs=65.0
Q ss_pred eEEEeccCCCCcHHHHHHHhhccCceEEEEecC-----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 364 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 364 tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
+|||+|||.++++++|+++|++||.|.+|++.. .++|||||+|.+.++|++|++ +++..+.|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 699999999999999999999999999998864 358999999999999999999 5999999999999875
No 342
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.32 E-value=4.3e-12 Score=130.48 Aligned_cols=114 Identities=13% Similarity=0.165 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHc--cCCccccccceeeecCCCCCCCC-----ccCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEec
Q 002123 323 DIRAARNAMKAL--QNKPLRRRKLDIHYSIPKDNPSE-----KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT 395 (964)
Q Consensus 323 d~esA~kAl~~L--ng~~i~Gr~L~V~~A~~k~~~~~-----~~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~ 395 (964)
+.+.+..|++.. ....+.+....|.....+..+.. .....++|||+|||.++++++|+++|++||.|.+|++.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 667888888877 45556666677766632222111 23346799999999999999999999999999999987
Q ss_pred C----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCC
Q 002123 396 Q----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 437 (964)
Q Consensus 396 ~----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k 437 (964)
. .++|||||+|.+.++|++|++.+ +..++|++|.|.++..-
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 4 36899999999999999999855 55999999999998753
No 343
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=3.3e-12 Score=117.27 Aligned_cols=73 Identities=21% Similarity=0.325 Sum_probs=65.7
Q ss_pred cceEEEeccCCCCcHHH----HHHHhhcc-CceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 002123 362 QGTLVVFNLDSSVSTEE----LHQIFGIY-GEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 362 ~~tLfV~NLp~~vTeed----LrelFs~f-G~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
.+.|||+|||+.+++++ |+++|++| |+|.+|. .|+|||+|.+.++|++|++.|||..+.||+|+|.+|+.
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 34599999999999888 55899999 5999982 39999999999999999999999999999999999997
Q ss_pred Cch
Q 002123 437 GGA 439 (964)
Q Consensus 437 k~~ 439 (964)
+.+
T Consensus 84 ~sd 86 (96)
T 2diu_A 84 NRE 86 (96)
T ss_dssp SCC
T ss_pred Ccc
Confidence 653
No 344
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.32 E-value=8.4e-13 Score=139.35 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=71.8
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccC--ceEEEEecCC-----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYG--EIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG--~I~sIri~~~-----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
..++|||+||+..+|+++|+++|++|| .|++|+|+.+ ++|||||+|.+.++|++||+.||+..|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 356899999999999999999999999 9999998643 688999999999999999999999999999999999
Q ss_pred ccCCch
Q 002123 434 SRPGGA 439 (964)
Q Consensus 434 A~~k~~ 439 (964)
|++...
T Consensus 147 a~~~~~ 152 (229)
T 3q2s_C 147 VNKQFL 152 (229)
T ss_dssp CCHHHH
T ss_pred CCCCcc
Confidence 987553
No 345
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.31 E-value=1.1e-12 Score=120.00 Aligned_cols=79 Identities=19% Similarity=0.375 Sum_probs=71.6
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
....++|||+|||..+++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++ ++..++|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345689999999999999999999999999999998654 57899999999999999999 999999999999999
Q ss_pred cCCch
Q 002123 435 RPGGA 439 (964)
Q Consensus 435 ~~k~~ 439 (964)
.++..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 87654
No 346
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=6.6e-13 Score=127.60 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=67.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcE----EEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDI----RTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I----~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
...++|||+|||+++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++||+. +++.|.||.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 457899999999999999999999999975 35543 688999999999999999999985 999999999999
Q ss_pred eecCC
Q 002123 347 HYSIP 351 (964)
Q Consensus 347 ~~A~~ 351 (964)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 347
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.30 E-value=2.8e-12 Score=136.57 Aligned_cols=81 Identities=21% Similarity=0.380 Sum_probs=71.8
Q ss_pred CCCCcEEEEecCCCCC---------CHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCcc-----
Q 002123 274 EHPSRTLFVRNINSNV---------EDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL----- 339 (964)
Q Consensus 274 e~~srtLFVgNLP~~v---------TEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i----- 339 (964)
....++|||+||+.++ +|++|+++|++||+|.+|++ ..+||||||+|.+.++|+.|+++|+|+.|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v-~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRY-VESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEE-EGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEE-ECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 4568999999999998 79999999999999999998 46799999999999999999999999999
Q ss_pred -------ccccceeeecCCCCCC
Q 002123 340 -------RRRKLDIHYSIPKDNP 355 (964)
Q Consensus 340 -------~Gr~L~V~~A~~k~~~ 355 (964)
.|+.|.|.||..+.++
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TTGGGGGGSCCCEEEECC-----
T ss_pred ccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876554
No 348
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=4.4e-12 Score=119.03 Aligned_cols=74 Identities=16% Similarity=0.302 Sum_probs=63.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----c---CCccceEEEEeCCHHHHHHHHHHccCCccccccce
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----A---CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----t---gksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~ 345 (964)
....++|||+|||+++|+++|+++|++||+|. +.+ + +++||||||+|.+.++|++||+.|++ +.|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEE
Confidence 34579999999999999999999999999999 654 2 68899999999999999999999843 6677776
Q ss_pred eeecC
Q 002123 346 IHYSI 350 (964)
Q Consensus 346 V~~A~ 350 (964)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 66543
No 349
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.29 E-value=5.5e-12 Score=128.08 Aligned_cols=79 Identities=16% Similarity=0.273 Sum_probs=73.2
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEecc
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (964)
...++|||+|||..+++++|+++|++||.|++|++..+ ++|||||+|.+.++|++|++.|||..|.|++|+|.+|.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 34679999999999999999999999999999998753 68999999999999999999999999999999999998
Q ss_pred CCc
Q 002123 436 PGG 438 (964)
Q Consensus 436 ~k~ 438 (964)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 754
No 350
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.4e-11 Score=115.43 Aligned_cols=83 Identities=16% Similarity=0.276 Sum_probs=72.6
Q ss_pred CCCCCcEEEEecCCCCCC-----------HHHHHHhhccCCcEEEEEe-cCCccceEEEEeCCHHHHHHHHHHccCCccc
Q 002123 273 GEHPSRTLFVRNINSNVE-----------DSELKALFEQFGDIRTIYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLR 340 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~vT-----------EedLrelFs~fG~I~svki-tgksRGfaFV~F~d~esA~kAl~~Lng~~i~ 340 (964)
...++++|+|+||....+ +++|+++|++||+|..|.+ ...++|||||+|.+.++|++|++.|||..|.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 556789999999954432 6899999999999999976 4568999999999999999999999999999
Q ss_pred cccceeeecCCCCCC
Q 002123 341 RRKLDIHYSIPKDNP 355 (964)
Q Consensus 341 Gr~L~V~~A~~k~~~ 355 (964)
|++|.|.++.++...
T Consensus 91 gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 91 GRQITAQAWDGTTDY 105 (112)
T ss_dssp TEECEEEECCSCCCS
T ss_pred CcEEEEEEeCCCCCc
Confidence 999999999876543
No 351
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.27 E-value=5.3e-12 Score=145.21 Aligned_cols=81 Identities=27% Similarity=0.434 Sum_probs=75.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeee
Q 002123 274 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 348 (964)
Q Consensus 274 e~~srtLFVgNLP~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~ 348 (964)
..+.++|||+|||.++|+++|+++|++||.|..|.+ +++++|||||+|.+.++|++||+.|||+.|.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456789999999999999999999999999999976 678899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002123 349 SIPKDN 354 (964)
Q Consensus 349 A~~k~~ 354 (964)
+.++..
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987543
No 352
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.25 E-value=4.6e-12 Score=122.36 Aligned_cols=77 Identities=25% Similarity=0.273 Sum_probs=68.1
Q ss_pred CCcceEEEeccCCCCcHHHHHHHhhccCceE--EEEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEe
Q 002123 360 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIR--EIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 433 (964)
Q Consensus 360 ~~~~tLfV~NLp~~vTeedLrelFs~fG~I~--sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~ 433 (964)
....+|||+|||+++|+++|+++|++| .|. +|+|+.+ ++|||||+|.+.++|++||+ +++..|+||.|+|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 356789999999999999999999999 566 8888743 68999999999999999999 588999999999999
Q ss_pred ccCCc
Q 002123 434 SRPGG 438 (964)
Q Consensus 434 A~~k~ 438 (964)
+.+++
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87643
No 353
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=2.3e-12 Score=123.86 Aligned_cols=80 Identities=23% Similarity=0.226 Sum_probs=69.7
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCce----EEEEecC----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEI----REIRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I----~sIri~~----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
...+|||+|||+++|+++|+++|++||.| ..|+++. +++|||||+|.+.++|++||+. |+..|+||.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 35799999999999999999999999975 5677653 3679999999999999999995 9999999999999
Q ss_pred eccCCchhh
Q 002123 433 ASRPGGARR 441 (964)
Q Consensus 433 ~A~~k~~r~ 441 (964)
.+.+++.++
T Consensus 101 ~a~~~e~~~ 109 (123)
T 2dha_A 101 RSTAAEVQQ 109 (123)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHH
Confidence 998765444
No 354
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.25 E-value=2.2e-11 Score=113.71 Aligned_cols=77 Identities=17% Similarity=0.162 Sum_probs=67.8
Q ss_pred CCcceEEEeccCC-----CCcHHHHHHHhhccCceEEEEecC------CCCceEEEeeCCHHHHHHHHHHhCCceeCCce
Q 002123 360 ANQGTLVVFNLDS-----SVSTEELHQIFGIYGEIREIRDTQ------HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428 (964)
Q Consensus 360 ~~~~tLfV~NLp~-----~vTeedLrelFs~fG~I~sIri~~------~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~ 428 (964)
...++|+|+||.. +-++++|+++|++||.|.+|+|+. .++|||||+|.+.++|.+|++.|||+.++||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3567999999952 236899999999999999999864 35899999999999999999999999999999
Q ss_pred EEEEeccC
Q 002123 429 IKLEASRP 436 (964)
Q Consensus 429 LkV~~A~~ 436 (964)
|+|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999975
No 355
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=2.6e-11 Score=113.49 Aligned_cols=82 Identities=20% Similarity=0.276 Sum_probs=70.7
Q ss_pred ccCCcceEEEeccCCCCc-----------HHHHHHHhhccCceEEEEec-CCCCceEEEeeCCHHHHHHHHHHhCCceeC
Q 002123 358 KDANQGTLVVFNLDSSVS-----------TEELHQIFGIYGEIREIRDT-QHKHNHKFIEFYDIRAAETALRTLNRSDVA 425 (964)
Q Consensus 358 ~~~~~~tLfV~NLp~~vT-----------eedLrelFs~fG~I~sIri~-~~skGfaFVeF~d~esA~kAL~~LNG~~I~ 425 (964)
.....++|+|+||....+ +++|+++|++||.|.+|.|. +.++|||||+|.+.++|++|++.|||..|+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 345678999999944432 58999999999999999764 347899999999999999999999999999
Q ss_pred CceEEEEeccCCch
Q 002123 426 GKQIKLEASRPGGA 439 (964)
Q Consensus 426 Gr~LkV~~A~~k~~ 439 (964)
|++|+|.++.++..
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999988653
No 356
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.23 E-value=2.2e-11 Score=113.69 Aligned_cols=78 Identities=14% Similarity=0.230 Sum_probs=68.8
Q ss_pred CCCCcEEEEecCCC-----CCCHHHHHHhhccCCcEEEEEec------CCccceEEEEeCCHHHHHHHHHHccCCccccc
Q 002123 274 EHPSRTLFVRNINS-----NVEDSELKALFEQFGDIRTIYTA------CKHRGFVMISYYDIRAARNAMKALQNKPLRRR 342 (964)
Q Consensus 274 e~~srtLFVgNLP~-----~vTEedLrelFs~fG~I~svkit------gksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr 342 (964)
..++++|+|+||.. +-++++|+++|++||+|.+|++. ++++|||||+|.+.++|++|++.|||+.+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35789999999973 23789999999999999999861 46899999999999999999999999999999
Q ss_pred cceeeecCC
Q 002123 343 KLDIHYSIP 351 (964)
Q Consensus 343 ~L~V~~A~~ 351 (964)
.|.|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999854
No 357
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=2.5e-11 Score=113.91 Aligned_cols=78 Identities=13% Similarity=0.172 Sum_probs=66.4
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecC--------CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEE
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ--------HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 432 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~--------~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~ 432 (964)
..++|||+|||.++++++|+++|++||.|. +.++. .++|||||+|.+.++|++|++.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 457999999999999999999999999999 76653 458999999999999999999994 4788888888
Q ss_pred eccCCchhh
Q 002123 433 ASRPGGARR 441 (964)
Q Consensus 433 ~A~~k~~r~ 441 (964)
.+.+...+.
T Consensus 84 ~~~~~~~~~ 92 (114)
T 2dnl_A 84 SSPTIKDKP 92 (114)
T ss_dssp CCSSSCSEE
T ss_pred cCCCcCCCe
Confidence 766554433
No 358
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.19 E-value=2.6e-11 Score=124.71 Aligned_cols=75 Identities=13% Similarity=0.319 Sum_probs=68.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCC
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~ 351 (964)
..++|||+|||+++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.+ +..+.|++|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4589999999999999999999999999999987 4779999999999999999999755 5689999999998754
No 359
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.16 E-value=1.6e-11 Score=118.87 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=65.3
Q ss_pred cEEEEecC----CCCCCHHHHHHhhccCCcEEEEEe-----cCCccceEEEEeCC----HHH----HHHHHH--HccCCc
Q 002123 278 RTLFVRNI----NSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYD----IRA----ARNAMK--ALQNKP 338 (964)
Q Consensus 278 rtLFVgNL----P~~vTEedLrelFs~fG~I~svki-----tgksRGfaFV~F~d----~es----A~kAl~--~Lng~~ 338 (964)
++|||+|| |+.+++++|+++|++||+|.+|.+ |+.++|||||+|.+ +++ |.+|++ .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999975 89999999999996 333 899998 789999
Q ss_pred cccccceeeecC
Q 002123 339 LRRRKLDIHYSI 350 (964)
Q Consensus 339 i~Gr~L~V~~A~ 350 (964)
|.|++|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998753
No 360
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.15 E-value=8.8e-11 Score=109.52 Aligned_cols=76 Identities=17% Similarity=0.319 Sum_probs=66.8
Q ss_pred CcceEEEecc--CCCCc--------HHHHHHHhhccCceEEEEecCC-------CCceEEEeeCCHHHHHHHHHHhCCce
Q 002123 361 NQGTLVVFNL--DSSVS--------TEELHQIFGIYGEIREIRDTQH-------KHNHKFIEFYDIRAAETALRTLNRSD 423 (964)
Q Consensus 361 ~~~tLfV~NL--p~~vT--------eedLrelFs~fG~I~sIri~~~-------skGfaFVeF~d~esA~kAL~~LNG~~ 423 (964)
+.+.|.|.|+ +..+. +++|+++|++||.|.+|+|+.+ ++|+|||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678999998 33443 3799999999999999999753 57999999999999999999999999
Q ss_pred eCCceEEEEeccC
Q 002123 424 VAGKQIKLEASRP 436 (964)
Q Consensus 424 I~Gr~LkV~~A~~ 436 (964)
++||+|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999875
No 361
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.10 E-value=1.5e-10 Score=107.91 Aligned_cols=77 Identities=17% Similarity=0.375 Sum_probs=67.5
Q ss_pred CCCcEEEEecC--CCCCC--------HHHHHHhhccCCcEEEEEec-------CCccceEEEEeCCHHHHHHHHHHccCC
Q 002123 275 HPSRTLFVRNI--NSNVE--------DSELKALFEQFGDIRTIYTA-------CKHRGFVMISYYDIRAARNAMKALQNK 337 (964)
Q Consensus 275 ~~srtLFVgNL--P~~vT--------EedLrelFs~fG~I~svkit-------gksRGfaFV~F~d~esA~kAl~~Lng~ 337 (964)
.+++.|.+.|+ |.++. +++|++.|++||+|.+|++. ++++|||||+|.+.++|++|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 47899999998 44443 36999999999999999872 357899999999999999999999999
Q ss_pred ccccccceeeecCC
Q 002123 338 PLRRRKLDIHYSIP 351 (964)
Q Consensus 338 ~i~Gr~L~V~~A~~ 351 (964)
.+.||.|.|.|+..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999853
No 362
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=2.3e-10 Score=106.10 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=60.2
Q ss_pred CCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccCCch
Q 002123 372 SSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 439 (964)
Q Consensus 372 ~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~k~~ 439 (964)
..+++++|+++|++||.|.+|++++.++|||||+|.+.++|++|++.+++ +.|++|+|.|++++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 57899999999999999999999988999999999999999999997544 6899999999987654
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=6.7e-10 Score=103.00 Aligned_cols=66 Identities=17% Similarity=0.306 Sum_probs=59.9
Q ss_pred CCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCCCCC
Q 002123 287 SNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 354 (964)
Q Consensus 287 ~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~k~~ 354 (964)
.++++++|+++|++||+|..|++.+++||||||+|.+.++|++|++.+++ +.|++|.|.|+.++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 56899999999999999999999889999999999999999999997554 6799999999987654
No 364
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.06 E-value=9.8e-11 Score=113.31 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=67.0
Q ss_pred ceEEEecc----CCCCcHHHHHHHhhccCceEEEEecCC-----CCceEEEeeCC----HHH----HHHHHH--HhCCce
Q 002123 363 GTLVVFNL----DSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYD----IRA----AETALR--TLNRSD 423 (964)
Q Consensus 363 ~tLfV~NL----p~~vTeedLrelFs~fG~I~sIri~~~-----skGfaFVeF~d----~es----A~kAL~--~LNG~~ 423 (964)
.+|||+|| |+.+++++|+++|++||+|.+|+++.+ ++|||||+|.| +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 999999999999999999999988643 69999999996 333 889988 789999
Q ss_pred eCCceEEEEeccCCch
Q 002123 424 VAGKQIKLEASRPGGA 439 (964)
Q Consensus 424 I~Gr~LkV~~A~~k~~ 439 (964)
|+|++|+|.+-+....
T Consensus 83 I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL 98 (136)
T ss_dssp ETTEEEEEEECCTTHH
T ss_pred ecCcEEEEEECcccHH
Confidence 9999999999876554
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.04 E-value=8.7e-11 Score=109.32 Aligned_cols=68 Identities=28% Similarity=0.376 Sum_probs=58.7
Q ss_pred EeccCCCCcHHHHHHHh------------hccCceEEEEecCC----CCceEEEeeCCHHHHHHHHHHhCCceeCCceEE
Q 002123 367 VFNLDSSVSTEELHQIF------------GIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 430 (964)
Q Consensus 367 V~NLp~~vTeedLrelF------------s~fG~I~sIri~~~----skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~Lk 430 (964)
+.+|+..+++++|++.| ++||.|.+|++..+ ++|||||+|.+.++|++|++.|||+.++||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666667777666655 99999999999864 589999999999999999999999999999999
Q ss_pred EEec
Q 002123 431 LEAS 434 (964)
Q Consensus 431 V~~A 434 (964)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.04 E-value=2.5e-10 Score=127.51 Aligned_cols=77 Identities=16% Similarity=0.297 Sum_probs=67.8
Q ss_pred CCCCCcEEEEec--CCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccc---cc--cce
Q 002123 273 GEHPSRTLFVRN--INSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR---RR--KLD 345 (964)
Q Consensus 273 ~e~~srtLFVgN--LP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~---Gr--~L~ 345 (964)
...++++|||+| |+..+||++|+++|++||+|.+|++ ..+||||||+|.+.++|++|+++|||+.+. |+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~-~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM-PPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEEC-CTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 467889999999 5789999999999999999999988 347999999999999999999999999873 44 677
Q ss_pred eeecC
Q 002123 346 IHYSI 350 (964)
Q Consensus 346 V~~A~ 350 (964)
|.|+.
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 78764
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.04 E-value=7e-11 Score=109.93 Aligned_cols=68 Identities=19% Similarity=0.347 Sum_probs=60.9
Q ss_pred EecCCCCCCHHHHHHhh------------ccCCcEEEEEe----cCCccceEEEEeCCHHHHHHHHHHccCCccccccce
Q 002123 282 VRNINSNVEDSELKALF------------EQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 345 (964)
Q Consensus 282 VgNLP~~vTEedLrelF------------s~fG~I~svki----tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~ 345 (964)
+.+|+.++++++|++.| ++||+|.+|++ .++++|||||+|.+.++|++|++.|||+.+.||+|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56788888888887777 99999999987 356799999999999999999999999999999999
Q ss_pred eeec
Q 002123 346 IHYS 349 (964)
Q Consensus 346 V~~A 349 (964)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.04 E-value=3.5e-10 Score=107.93 Aligned_cols=75 Identities=15% Similarity=0.225 Sum_probs=65.8
Q ss_pred CCcEEEEecCCC--CC---CHHHHHHhhccCCcEEEEEec---------CCccceEEEEeCCHHHHHHHHHHccCCcccc
Q 002123 276 PSRTLFVRNINS--NV---EDSELKALFEQFGDIRTIYTA---------CKHRGFVMISYYDIRAARNAMKALQNKPLRR 341 (964)
Q Consensus 276 ~srtLFVgNLP~--~v---TEedLrelFs~fG~I~svkit---------gksRGfaFV~F~d~esA~kAl~~Lng~~i~G 341 (964)
++++|+++|+-. ++ .++||++.|++||+|.+|++. ++++|||||+|.+.++|++|++.|||+.+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 689999999942 22 368999999999999999761 3467999999999999999999999999999
Q ss_pred ccceeeecC
Q 002123 342 RKLDIHYSI 350 (964)
Q Consensus 342 r~L~V~~A~ 350 (964)
|.|.|.|+.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999985
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.02 E-value=4.7e-10 Score=107.03 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=66.0
Q ss_pred CcceEEEeccC--CCC---cHHHHHHHhhccCceEEEEecCC---------CCceEEEeeCCHHHHHHHHHHhCCceeCC
Q 002123 361 NQGTLVVFNLD--SSV---STEELHQIFGIYGEIREIRDTQH---------KHNHKFIEFYDIRAAETALRTLNRSDVAG 426 (964)
Q Consensus 361 ~~~tLfV~NLp--~~v---TeedLrelFs~fG~I~sIri~~~---------skGfaFVeF~d~esA~kAL~~LNG~~I~G 426 (964)
+.++|+|+|+- .++ -+++|+++|++||.|.+|+|+.+ ++|++||+|.+.++|.+|++.|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 46789999983 222 36899999999999999998653 34899999999999999999999999999
Q ss_pred ceEEEEeccC
Q 002123 427 KQIKLEASRP 436 (964)
Q Consensus 427 r~LkV~~A~~ 436 (964)
|+|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999865
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.02 E-value=4.5e-10 Score=125.44 Aligned_cols=76 Identities=22% Similarity=0.298 Sum_probs=67.0
Q ss_pred cCCcceEEEec--cCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCcee---CCc--eEEE
Q 002123 359 DANQGTLVVFN--LDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDV---AGK--QIKL 431 (964)
Q Consensus 359 ~~~~~tLfV~N--Lp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I---~Gr--~LkV 431 (964)
..+..+|||+| |+..+|+++|+++|++||+|++|++.+ +||||||+|.+.++|++|+++|||+.+ .|+ +|+|
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 34567999999 578999999999999999999998875 699999999999999999999999987 244 6888
Q ss_pred Eecc
Q 002123 432 EASR 435 (964)
Q Consensus 432 ~~A~ 435 (964)
.++.
T Consensus 94 ~~~~ 97 (345)
T 3tht_A 94 NFVE 97 (345)
T ss_dssp EECS
T ss_pred EEee
Confidence 8874
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.02 E-value=7.6e-10 Score=105.00 Aligned_cols=78 Identities=15% Similarity=0.121 Sum_probs=67.0
Q ss_pred CCcceEEEeccC--CCC--------cHHHHHHHhhccCceEEEEecCC-CCceEEEeeCCHHHHHHHHHHhCCceeCCce
Q 002123 360 ANQGTLVVFNLD--SSV--------STEELHQIFGIYGEIREIRDTQH-KHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 428 (964)
Q Consensus 360 ~~~~tLfV~NLp--~~v--------TeedLrelFs~fG~I~sIri~~~-skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~ 428 (964)
.+.++|.++|+= .+. -+++|+++|++||.|.+|++..+ .+|||||+|.+.++|.+|++.|||+.++||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 456789999982 221 14689999999999999999765 4899999999999999999999999999999
Q ss_pred EEEEeccCC
Q 002123 429 IKLEASRPG 437 (964)
Q Consensus 429 LkV~~A~~k 437 (964)
|+|.++...
T Consensus 85 i~v~~~~~~ 93 (114)
T 3s6e_A 85 ITAAYVPLP 93 (114)
T ss_dssp CEEEEECHH
T ss_pred EEEEEEcHH
Confidence 999998653
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.86 E-value=4.4e-09 Score=99.73 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=65.2
Q ss_pred CCCcEEEEecCCCCCC----------HHHHHHhhccCCcEEEEEec-CCccceEEEEeCCHHHHHHHHHHccCCcccccc
Q 002123 275 HPSRTLFVRNINSNVE----------DSELKALFEQFGDIRTIYTA-CKHRGFVMISYYDIRAARNAMKALQNKPLRRRK 343 (964)
Q Consensus 275 ~~srtLFVgNLP~~vT----------EedLrelFs~fG~I~svkit-gksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~ 343 (964)
.+++.|.++|+=..-. +++|++.|++||.|.+|++. ...+|||||+|.+.++|++|++.|||+.+.||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4678899998843222 45889999999999999883 335899999999999999999999999999999
Q ss_pred ceeeecC
Q 002123 344 LDIHYSI 350 (964)
Q Consensus 344 L~V~~A~ 350 (964)
|.|.|+.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999984
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=2e-08 Score=91.52 Aligned_cols=74 Identities=24% Similarity=0.389 Sum_probs=64.0
Q ss_pred CCcceEEEeccC----CCCcH----HHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEE
Q 002123 360 ANQGTLVVFNLD----SSVST----EELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL 431 (964)
Q Consensus 360 ~~~~tLfV~NLp----~~vTe----edLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV 431 (964)
.+..||+|.-.+ ..+-+ .+|.+.|.+||+|..+++..+ .+||+|.+.++|.+|++ |||..++||.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d---~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED---KMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS---SEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC---CEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 456788888876 23333 679999999999999999875 39999999999999999 9999999999999
Q ss_pred EeccCC
Q 002123 432 EASRPG 437 (964)
Q Consensus 432 ~~A~~k 437 (964)
.++.+.
T Consensus 81 ~lkt~d 86 (91)
T 2dnr_A 81 ALKSPS 86 (91)
T ss_dssp EECCCS
T ss_pred EeCCCC
Confidence 999874
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=2.5e-08 Score=95.69 Aligned_cols=84 Identities=18% Similarity=0.147 Sum_probs=73.2
Q ss_pred CCcceEEEeccCCC-CcHHHHHHHhhccCceEEEEecCCCCceEEEeeCC-HHHHHHHHHHhC--CceeCCceEEEEecc
Q 002123 360 ANQGTLVVFNLDSS-VSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYD-IRAAETALRTLN--RSDVAGKQIKLEASR 435 (964)
Q Consensus 360 ~~~~tLfV~NLp~~-vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d-~esA~kAL~~LN--G~~I~Gr~LkV~~A~ 435 (964)
.....|||+||+.. ++.++|+++|++||+|.+|.+..+ ...|||+|.+ .++|.+|++.|| +..|.|..++++...
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g-~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC-CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 34568999999999 999999999999999999999876 4479999999 899999999995 678999999999888
Q ss_pred CCchhhhcc
Q 002123 436 PGGARRFMV 444 (964)
Q Consensus 436 ~k~~r~~~q 444 (964)
-.+++.-++
T Consensus 95 GeeE~~yw~ 103 (121)
T 1owx_A 95 GEVEKEALK 103 (121)
T ss_dssp HHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 777666333
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=1.4e-07 Score=86.37 Aligned_cols=74 Identities=26% Similarity=0.355 Sum_probs=63.5
Q ss_pred cCCcceEEEeccCCC-----CcH----HHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceE
Q 002123 359 DANQGTLVVFNLDSS-----VST----EELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 429 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~-----vTe----edLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~L 429 (964)
..+..||+|.-++.. +-+ .+|.+.|.+||+|..+|+..+. +||+|.+.++|.+||+ |||..|+||.|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 345679999988743 222 5699999999999999998774 9999999999999999 99999999999
Q ss_pred EEEeccC
Q 002123 430 KLEASRP 436 (964)
Q Consensus 430 kV~~A~~ 436 (964)
+|.+..+
T Consensus 88 ~V~~k~~ 94 (95)
T 1ufw_A 88 KISGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEeccCC
Confidence 9998654
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=4.3e-07 Score=87.07 Aligned_cols=77 Identities=18% Similarity=0.160 Sum_probs=65.7
Q ss_pred CCCCCcEEEEecCCCC-CCHHHHHHhhccCCcEEEEEecCCccceEEEEeCC-HHHHHHHHHHcc--CCccccccceeee
Q 002123 273 GEHPSRTLFVRNINSN-VEDSELKALFEQFGDIRTIYTACKHRGFVMISYYD-IRAARNAMKALQ--NKPLRRRKLDIHY 348 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~-vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d-~esA~kAl~~Ln--g~~i~Gr~L~V~~ 348 (964)
.-.+.+.|||+||+.+ +++++|+++|++||+|..|.+ -...-.|||.|.+ .++|..|++.++ +..|.|..+.+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~-~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF-VRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC-CTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEE-ecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 4567899999999999 999999999999999999988 3333379999999 899999999994 6788888777765
Q ss_pred cC
Q 002123 349 SI 350 (964)
Q Consensus 349 A~ 350 (964)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=1.8e-07 Score=85.21 Aligned_cols=74 Identities=24% Similarity=0.338 Sum_probs=62.7
Q ss_pred CCCcEEEEecCC----CCCCH----HHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCcccccccee
Q 002123 275 HPSRTLFVRNIN----SNVED----SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 346 (964)
Q Consensus 275 ~~srtLFVgNLP----~~vTE----edLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V 346 (964)
.+..||+|.-.+ .++-+ .+|.+.|.+||+|..+++.. +.+||+|.+.++|.+||+ |+|..+.||.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 466789998877 34445 67889999999999999822 349999999999999998 9999999999999
Q ss_pred eecCCC
Q 002123 347 HYSIPK 352 (964)
Q Consensus 347 ~~A~~k 352 (964)
+.+.+.
T Consensus 81 ~lkt~d 86 (91)
T 2dnr_A 81 ALKSPS 86 (91)
T ss_dssp EECCCS
T ss_pred EeCCCC
Confidence 998753
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.36 E-value=8.3e-07 Score=92.08 Aligned_cols=64 Identities=19% Similarity=0.225 Sum_probs=57.6
Q ss_pred CCcHHHHHHHhhccCceEEEEec----C-----CCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 002123 373 SVSTEELHQIFGIYGEIREIRDT----Q-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 373 ~vTeedLrelFs~fG~I~sIri~----~-----~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
.-.+++|++.|++||.|.+|+|. . .++|++||+|.+.++|.+|++.|||+.++||.|.|.++..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 34678999999999999999985 2 4678999999999999999999999999999999999764
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.28 E-value=1.1e-06 Score=91.19 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=56.9
Q ss_pred CCHHHHHHhhccCCcEEEEEe---------cCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecC
Q 002123 289 VEDSELKALFEQFGDIRTIYT---------ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 350 (964)
Q Consensus 289 vTEedLrelFs~fG~I~svki---------tgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~ 350 (964)
-.+++|++.|++||+|.++++ +++++|++||+|.+.++|++|++.|+|..+.||.|.|.|+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 457899999999999999986 23789999999999999999999999999999999999975
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.15 E-value=2e-06 Score=78.79 Aligned_cols=74 Identities=14% Similarity=0.191 Sum_probs=61.6
Q ss_pred CCCCCcEEEEecCCCC-----CCH----HHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCcccccc
Q 002123 273 GEHPSRTLFVRNINSN-----VED----SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK 343 (964)
Q Consensus 273 ~e~~srtLFVgNLP~~-----vTE----edLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~ 343 (964)
.-.+..||+|.-++.+ +-+ .+|.+.|.+||+|..+++.... +||+|.+.++|.+||+ |+|+.+.||.
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 3457789999988753 333 5788999999999999872222 9999999999999998 9999999999
Q ss_pred ceeeecC
Q 002123 344 LDIHYSI 350 (964)
Q Consensus 344 L~V~~A~ 350 (964)
|+|++..
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9998754
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.14 E-value=5.7e-06 Score=77.53 Aligned_cols=73 Identities=27% Similarity=0.274 Sum_probs=67.3
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhcc-----CceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEec
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIY-----GEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 434 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~f-----G~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A 434 (964)
..++|-+-|||+.+++..|+.+.++| |.|+.|.+.++. +-|+|+|.|...|.+|.-+|+|.+|.||+|+|.-.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-CceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 35799999999999999999999999 999999999884 44999999999999999999999999999999743
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.38 E-value=0.0011 Score=61.58 Aligned_cols=89 Identities=17% Similarity=0.206 Sum_probs=73.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcc-----CCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeec
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQ-----FGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 349 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~-----fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A 349 (964)
...++|.|.|||+++.++.|.-+|+. =|+|..+...+ +-|+|+|.+.+.|++.++ -..+.|.+..|.|...
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLA-QADHELHGAQLSLRPA 81 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEEC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcC
Confidence 34589999999999999999999996 26899998744 789999999999999996 4467899999999765
Q ss_pred CCCCCCCCccCCcceEEEeccCCCCc
Q 002123 350 IPKDNPSEKDANQGTLVVFNLDSSVS 375 (964)
Q Consensus 350 ~~k~~~~~~~~~~~tLfV~NLp~~vT 375 (964)
.++ ..++|++.+|++.++
T Consensus 82 ~~~--------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 82 PPR--------APARLLLQGLPPGTS 99 (104)
T ss_dssp CCC--------CCCCCCCCSCCCCCC
T ss_pred CCC--------CcceEeeecCCCCCC
Confidence 443 346799999988775
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.00053 Score=64.37 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=64.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccC-----CcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceee
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQF-----GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 347 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~f-----G~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~ 347 (964)
...++|=+-|||..+++..|+.+.+++ |+|+.+.+... .+=|+|+|.|...|-+|.-+|+|.+|.||+|+|.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 346899999999999999999999999 99999988444 4559999999999999998999999999999984
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.77 E-value=0.005 Score=57.22 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=65.7
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhc-----cCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEecc
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGI-----YGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 435 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~-----fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~ 435 (964)
...+|.|.|||+.++++.|.-.|+. =|+|.++...+ +-|+|+|.+.+.|++.|+ -....+.+..|.|....
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCC
Confidence 3568999999999999999999987 27899998765 789999999999999987 33678899999999887
Q ss_pred CCchhh
Q 002123 436 PGGARR 441 (964)
Q Consensus 436 ~k~~r~ 441 (964)
++..++
T Consensus 83 ~~~~~r 88 (104)
T 2dhx_A 83 PRAPAR 88 (104)
T ss_dssp CCCCCC
T ss_pred CCCcce
Confidence 776555
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.55 E-value=0.0027 Score=59.10 Aligned_cols=76 Identities=18% Similarity=0.233 Sum_probs=63.3
Q ss_pred cceEEEeccCCCC-c----HHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 002123 362 QGTLVVFNLDSSV-S----TEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 436 (964)
Q Consensus 362 ~~tLfV~NLp~~v-T----eedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~Gr~LkV~~A~~ 436 (964)
.++|+|.||+.++ . .+.++++|..|+.+......+.-+ -..|.|.+.++|.+|-..|++..+.|++|+|-++++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-EEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 3689999998766 2 357789999999988766654323 478999999999999999999999999999999985
Q ss_pred Cc
Q 002123 437 GG 438 (964)
Q Consensus 437 k~ 438 (964)
..
T Consensus 84 ~~ 85 (104)
T 1wey_A 84 LH 85 (104)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.39 E-value=0.0035 Score=58.41 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=63.3
Q ss_pred CcEEEEecCCCCC-CH----HHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCccccccceeeecCC
Q 002123 277 SRTLFVRNINSNV-ED----SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 351 (964)
Q Consensus 277 srtLFVgNLP~~v-TE----edLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~Gr~L~V~~A~~ 351 (964)
.++|+|.||+.++ +. +.++++|..|+++..... -++=.-..|.|.+.++|.+|-..|++..+.|++|+|-|+++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~-lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQY-FKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEE-ETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceee-cCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 5789999999877 32 567889999999887754 23333578999999999999999999999999999999985
Q ss_pred CC
Q 002123 352 KD 353 (964)
Q Consensus 352 k~ 353 (964)
..
T Consensus 84 ~~ 85 (104)
T 1wey_A 84 LH 85 (104)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.28 E-value=0.013 Score=55.87 Aligned_cols=75 Identities=16% Similarity=0.151 Sum_probs=62.6
Q ss_pred cCCcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCCceeCC-ceEEEEeccC
Q 002123 359 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAG-KQIKLEASRP 436 (964)
Q Consensus 359 ~~~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG~~I~G-r~LkV~~A~~ 436 (964)
......|.|.+.|+.. ...+.+.|++||+|.+... .....+-.|+|.++.+|++||. .||..|+| -.|=|.+...
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~d 96 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCID 96 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECCC
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECCC
Confidence 3456799999999985 5667789999999999886 3457899999999999999999 79999975 6777777654
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.34 E-value=0.037 Score=50.38 Aligned_cols=64 Identities=5% Similarity=0.050 Sum_probs=53.4
Q ss_pred cEEEEecCCCCCCHHHHHHhhccCCcEEEEEe-cCC------ccceEEEEeCCHHHHHHHHHHccCCcccc
Q 002123 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT-ACK------HRGFVMISYYDIRAARNAMKALQNKPLRR 341 (964)
Q Consensus 278 rtLFVgNLP~~vTEedLrelFs~fG~I~svki-tgk------sRGfaFV~F~d~esA~kAl~~Lng~~i~G 341 (964)
++|.|++||+.+||+++.+.+..+.++...+- .|+ .-.-|||.|.+.+++....+.++|+.+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 58999999999999999999999987765532 232 22579999999999999999999988754
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.23 E-value=0.04 Score=50.75 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=45.9
Q ss_pred CcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHcc
Q 002123 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQ 335 (964)
Q Consensus 277 srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Ln 335 (964)
.+.++| ++|+++...||.++|+.||.|..-.+ .-.-|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE---ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 456666 99999999999999999996554444 45689999999999999998664
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.84 E-value=0.057 Score=49.14 Aligned_cols=62 Identities=11% Similarity=0.083 Sum_probs=52.4
Q ss_pred ceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-C------CCceEEEeeCCHHHHHHHHHHhCCcee
Q 002123 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-H------KHNHKFIEFYDIRAAETALRTLNRSDV 424 (964)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-~------skGfaFVeF~d~esA~kAL~~LNG~~I 424 (964)
.+|.|++||+.+|++++.+.++.+.++......+ + .-.-|||.|.+.+++..-.+.++|..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 4799999999999999999999998877665532 2 122499999999999999999999987
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.65 E-value=0.068 Score=50.96 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=59.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccCCcccc-ccceeeec
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRR-RKLDIHYS 349 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng~~i~G-r~L~V~~A 349 (964)
...+-|.|-++|+.. .+.+...|++||+|.+... .....+..|.|.+..+|++||. .||+.|.| -.|-|...
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 346889999999985 6777788999999999887 3456799999999999999997 79998875 55556554
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.53 E-value=0.043 Score=50.67 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=45.2
Q ss_pred cEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHcc
Q 002123 278 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQ 335 (964)
Q Consensus 278 rtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Ln 335 (964)
+.++| ++|+++...||.++|+.||.|..-.+ .-.-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEE---ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 44556 99999999999999999996554444 45689999999999999999764
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.57 E-value=0.077 Score=51.37 Aligned_cols=73 Identities=16% Similarity=0.197 Sum_probs=57.0
Q ss_pred cceEEEeccCCCCcHHHHHHHhhccCceEE-EEec----------------C--CCCceEEEeeCCHHHHHHHHHHhCCc
Q 002123 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIRE-IRDT----------------Q--HKHNHKFIEFYDIRAAETALRTLNRS 422 (964)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~s-Iri~----------------~--~skGfaFVeF~d~esA~kAL~~LNG~ 422 (964)
...|.|.+.|+..+. .+.+.|++||.|.+ +... + ...+...|+|.+..+|.+||. -||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 457889999776654 56678999999976 2221 1 124577999999999999999 8999
Q ss_pred eeCCceEEEEeccC
Q 002123 423 DVAGKQIKLEASRP 436 (964)
Q Consensus 423 ~I~Gr~LkV~~A~~ 436 (964)
.|+|..|-|.+..+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999999998864
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=92.76 E-value=0.21 Score=46.04 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=44.4
Q ss_pred cceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhC
Q 002123 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLN 420 (964)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LN 420 (964)
...++| ++|..+...||.++|++||.|. |+.+. -.-|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~Wid--DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWID--DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEE--TTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEc--CCeEEEEecCHHHHHHHHHhcc
Confidence 456666 9999999999999999998542 33332 4579999999999999999763
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.63 E-value=0.052 Score=62.84 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=44.9
Q ss_pred CcceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHH
Q 002123 361 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALR 417 (964)
Q Consensus 361 ~~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~ 417 (964)
..+.|+|. .+..+++.+|.+.|++||.|.++....+...||.|+|.+.+++.+++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 45789997 799999999999999999999999888777899999999999998765
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.03 E-value=0.063 Score=62.14 Aligned_cols=56 Identities=11% Similarity=0.282 Sum_probs=43.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHH
Q 002123 276 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMK 332 (964)
Q Consensus 276 ~srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~ 332 (964)
..|.|||. .|..+++.+|.++|++||+|.++.......-||.|+|.+.++++.++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 35899998 799999999999999999999998854455699999999999997775
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=91.13 E-value=0.28 Score=45.11 Aligned_cols=67 Identities=9% Similarity=0.069 Sum_probs=51.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccCCcEEEEE-ecCC------ccceEEEEeCCHHHHHHHHHHccCCcccc
Q 002123 275 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-TACK------HRGFVMISYYDIRAARNAMKALQNKPLRR 341 (964)
Q Consensus 275 ~~srtLFVgNLP~~vTEedLrelFs~fG~I~svk-itgk------sRGfaFV~F~d~esA~kAl~~Lng~~i~G 341 (964)
..+-+|.|+.||+.+||+++.+.+..+=++...+ +.|+ .-.-|||.|.+.++.....+..+|+.+.+
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 3467899999999999999998888765543322 1222 12469999999999999999999987754
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.01 E-value=0.18 Score=48.84 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=54.9
Q ss_pred CcEEEEecCCCCCCHHHHHHhhccCCcEEEEE-ec-------------C-----CccceEEEEeCCHHHHHHHHHHccCC
Q 002123 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIY-TA-------------C-----KHRGFVMISYYDIRAARNAMKALQNK 337 (964)
Q Consensus 277 srtLFVgNLP~~vTEedLrelFs~fG~I~svk-it-------------g-----ksRGfaFV~F~d~esA~kAl~~Lng~ 337 (964)
...|.|-+.|++. ...+.+.|++||.|.+-. .+ . ....+..|+|.+..+|++||. .||+
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 4678888897755 556667899999997732 11 0 135688999999999999997 8999
Q ss_pred ccccccceeeecC
Q 002123 338 PLRRRKLDIHYSI 350 (964)
Q Consensus 338 ~i~Gr~L~V~~A~ 350 (964)
.|.|..|-|....
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999877776653
No 399
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=90.94 E-value=0.23 Score=45.93 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=44.5
Q ss_pred ceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhC
Q 002123 363 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLN 420 (964)
Q Consensus 363 ~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LN 420 (964)
..++| ++|..+...||.++|++||.| .|+.+. -.-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~Wid--DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID--DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEE--TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEc--CCeEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999944 344443 4579999999999999999775
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=90.07 E-value=0.31 Score=44.88 Aligned_cols=63 Identities=10% Similarity=0.033 Sum_probs=49.7
Q ss_pred cceEEEeccCCCCcHHHHHHHhhccCceEEEEecC-C------CCceEEEeeCCHHHHHHHHHHhCCcee
Q 002123 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-H------KHNHKFIEFYDIRAAETALRTLNRSDV 424 (964)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~-~------skGfaFVeF~d~esA~kAL~~LNG~~I 424 (964)
.-+|.|+.||+.+|++++.+.++..-++......+ + .-.-|||.|.+.++...-.+..+|..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 34799999999999999999888866654433322 1 112489999999999999999999986
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=69.56 E-value=9.4 Score=44.55 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=47.1
Q ss_pred CcEEEEecCCCCCCHHHHHHhhccCCcEEEEEecCCccceEEEEeCCHHHHHHHHHHccC
Q 002123 277 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN 336 (964)
Q Consensus 277 srtLFVgNLP~~vTEedLrelFs~fG~I~svkitgksRGfaFV~F~d~esA~kAl~~Lng 336 (964)
...++|+ +|..+...+|.++|+.||.|.-..+ ....|||.|.+.+.|..+++.+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC---SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE---cCCeEEEEECCHHHHHHHHHHHHh
Confidence 4577777 9999999999999999997665555 455699999999999999998753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=60.84 E-value=15 Score=42.82 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=45.8
Q ss_pred cceEEEeccCCCCcHHHHHHHhhccCceEEEEecCCCCceEEEeeCCHHHHHHHHHHhCC
Q 002123 362 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR 421 (964)
Q Consensus 362 ~~tLfV~NLp~~vTeedLrelFs~fG~I~sIri~~~skGfaFVeF~d~esA~kAL~~LNG 421 (964)
...++|+ ++..+...+|.+.|+.||.| +|+.+. ...|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid--dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID--DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS--SSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc--CCeEEEEECCHHHHHHHHHHHHh
Confidence 4567776 99999999999999999965 444443 45799999999999999998853
Done!