BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002125
(963 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 90/164 (54%), Gaps = 4/164 (2%)
Query: 23 NSNKYGVFLSFRGEDTRDNFTSHLYSALCHNNIETFIDN-DLKRGDEISQSLLDTXXXXX 81
+ KY VFLSFRG DTR NF S LY L +I TF D+ +L+ G S L
Sbjct: 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSR 64
Query: 82 XXXXXXXXRYASSGWCLDELSKILECKHDYGQIVIPVFCRVDPSHVRRQTGTFGDYFSKL 141
YA+S WCLDEL I++ + V+P+F V+P+HVR QTG + F K
Sbjct: 65 FAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKH 124
Query: 142 GKRY-PEKMHRWANALTEAANLSGFDSDVIRPESKLVEEIANEI 184
R PEK+ +W ALT A LSG S +SKLV++IANEI
Sbjct: 125 ASREDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLVDKIANEI 166
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 24 SNKYGVFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTXXXXXX 82
S +Y VFLSFRG DTR+ FT LY +L I TF D+D L +G EI +LL
Sbjct: 33 SVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKI 92
Query: 83 XXXXXXXRYASSGWCLDELSKILECK-HDYGQIVIPVFCRVDPSHVRRQTGTFGDYFSKL 141
YA S WCL EL++I+ + D +I++P+F VDPS VR QTG + F K
Sbjct: 93 YVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKH 152
Query: 142 GKRYP-EKMHRWANALTEAANLSGF 165
++ + + W +AL + +L G+
Sbjct: 153 ANKFDGQTIQNWKDALKKVGDLKGW 177
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 674 LPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKS 733
LP + NL+ L+ L + + + + +++ L L L L+ C+ L K
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257
Query: 734 LTSLEIIDCQNFMILPDELGNLKALETLIIDG 765
L + DC N + LP ++ L LE L + G
Sbjct: 258 LI---LKDCSNLLTLPLDIHRLTQLEKLDLRG 286
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 79/201 (39%), Gaps = 30/201 (14%)
Query: 558 TLELVKVGIKELPSSIECLSNLKKLYIVDCXXXXXXXXXXXXXXXXXXXEISNCSILKRF 617
TL L + ++ LP+SI L+ L++L I C E++
Sbjct: 131 TLTLARNPLRALPASIASLNRLRELSIRACP------------------ELTE------- 165
Query: 618 LEIPSCNIDGGIGIERLASCKLVLEKCXXXXXXXXXXCMFKSLTSLEIIDCQNFMMLPYE 677
L P + D + L + + + + ++L SL+I + + P
Sbjct: 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-A 224
Query: 678 LGNLKALEMLIVDG-TAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTS 736
+ +L LE L + G TA+R P A L RL LK+CS L + I L L
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ---LEK 281
Query: 737 LEIIDCQNFMILPDELGNLKA 757
L++ C N LP + L A
Sbjct: 282 LDLRGCVNLSRLPSLIAQLPA 302
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 10/135 (7%)
Query: 555 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCXXXXXXXXXXXXXXXXXXXEISNCSIL 614
++ +L L GI+ LP+SI L NLK L I + ++ C+ L
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTAL 242
Query: 615 KRFLEIPSCNIDGGIGIERLASCKLVLEKCXXXXXXXXXXCMFKSLTSLEIIDCQNFMML 674
+ + I GG R +L+L+ C L L++ C N L
Sbjct: 243 RNY-----PPIFGG----RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293
Query: 675 PYELGNLKALEMLIV 689
P + L A +++V
Sbjct: 294 PSLIAQLPANCIILV 308
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 688 IVD--GTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNF 745
IVD G + E+P +L + RL+ + + I FS +K L +++ + Q
Sbjct: 15 IVDCRGKGLTEIPTNLPETITEIRLEQ---NTIKVIPPGAFS--PYKKLRRIDLSNNQIS 69
Query: 746 MILPDELGNLKALETLIIDGTAMREVPESL 775
+ PD L++L +L++ G + E+P+SL
Sbjct: 70 ELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 688 IVD--GTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNF 745
IVD G + E+P +L + RL+ + + I FS +K L +++ + Q
Sbjct: 15 IVDCRGKGLTEIPTNLPETITEIRLEQ---NTIKVIPPGAFS--PYKKLRRIDLSNNQIS 69
Query: 746 MILPDELGNLKALETLIIDGTAMREVPESL 775
+ PD L++L +L++ G + E+P+SL
Sbjct: 70 ELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
>pdb|2XSX|A Chain A, Crystal Structure Of Human Beta Enolase Enob
pdb|2XSX|B Chain B, Crystal Structure Of Human Beta Enolase Enob
Length = 435
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 24 SNKYGVFLSFRGEDTRDNFTSHLYSALCHNNIET 57
SN +GV +S R +T D F + L LC I+T
Sbjct: 363 SNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT 396
>pdb|3AEI|A Chain A, Crystal Structure Of The Prefoldin Beta2 Subunit From
Thermo Strain Ks-1
pdb|3AEI|B Chain B, Crystal Structure Of The Prefoldin Beta2 Subunit From
Thermo Strain Ks-1
Length = 99
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 470 ELSVLEGKSLITCFYNYIRMHDLIRDMGREIVRNESIDHPGERSRLWYHEDIYKVLKNN 528
EL EG +IT + R++ D+ EI ++E+I+H ERSRL Y +I K+ K
Sbjct: 29 ELEYAEG--IITSLKSERRIYRAFSDLLVEITKDEAIEHI-ERSRLVYKREIEKLKKRE 84
>pdb|3GZT|B Chain B, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|F Chain F, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|G Chain G, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|H Chain H, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|I Chain I, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|J Chain J, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|K Chain K, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|L Chain L, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|M Chain M, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|N Chain N, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|O Chain O, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|P Chain P, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|Q Chain Q, Vp7 Recoated Rotavirus Dlp
Length = 255
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 830 LKLDPNELSEIVKDGWMKQSFAKSKYF--PGNEIPKWFRYQSMGSSVTLKMPP 880
L+LD +EL++++ + W+ + Y+ +E KW SMGSS T+K+ P
Sbjct: 91 LQLDMSELADLILNEWLCNPMDITLYYYQQTDEANKWI---SMGSSCTIKVCP 140
>pdb|3FMG|A Chain A, Structure Of Rotavirus Outer Capsid Protein Vp7 Trimer In
Co A Neutralizing Fab
pdb|3IYU|A Chain A, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|F Chain F, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|G Chain G, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|H Chain H, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|I Chain I, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|J Chain J, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|K Chain K, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|L Chain L, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|M Chain M, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|N Chain N, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|O Chain O, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|P Chain P, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|Q Chain Q, Atomic Model Of An Infectious Rotavirus Particle
Length = 276
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 830 LKLDPNELSEIVKDGWMKQSFAKSKYF--PGNEIPKWFRYQSMGSSVTLKMPP 880
L+LD +EL++++ + W+ + Y+ +E KW SMGSS T+K+ P
Sbjct: 98 LQLDMSELADLILNEWLCNPMDITLYYYQQTDEANKWI---SMGSSCTIKVCP 147
>pdb|1GZ0|A Chain A, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|B Chain B, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|C Chain C, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|D Chain D, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|E Chain E, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|F Chain F, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|G Chain G, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|H Chain H, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
Length = 253
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 296 KKFLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQVLKNCRARQI 345
+ FL++ D VT P + + +R D A+G +I +D+ N A+++
Sbjct: 104 QPFLLILDGVTDPHNLGACLRSAD--AAGVHAVIVPKDRSAQLNATAKKV 151
>pdb|3DDR|A Chain A, Structure Of The Serratia Marcescens Hemophore Receptor
Hasr-Ile671gly Mutant In Complex With Its Hemophore Hasa
And Heme
pdb|3DDR|B Chain B, Structure Of The Serratia Marcescens Hemophore Receptor
Hasr-Ile671gly Mutant In Complex With Its Hemophore Hasa
And Heme
Length = 865
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 16/117 (13%)
Query: 109 HDY-GQIVIPVFCRVDPSHVRRQTGTFGDYFSKLGKRY----PEKMHRWANALTEAANLS 163
+DY G + + R D +R QTG +K G+RY P K R LT + +
Sbjct: 495 YDYDGWLTLEGGLRYDRYRLRGQTGLSYPDLAKDGQRYTIDNPCKALR----LTGCSTTT 550
Query: 164 GFDSDVIRPESKLVEEIANEILERLE--ETFQSYNKDLVGVEWRIKEIESLLCTGFA 218
D DV R + KL +A + +E E + +Y K WR I L G A
Sbjct: 551 REDWDVDRDQGKLSPTLAVAVRPGVEWLELYTTYGK-----SWRPPAITETLTNGSA 602
>pdb|3CSL|A Chain A, Structure Of The Serratia Marcescens Hemophore Receptor
Hasr In Complex With Its Hemophore Hasa And Heme
pdb|3CSL|B Chain B, Structure Of The Serratia Marcescens Hemophore Receptor
Hasr In Complex With Its Hemophore Hasa And Heme
pdb|3CSN|A Chain A, Structure Of The Serratia Marcescens Hemophore Receptor
Hasr In Complex With Its Hemophore Hasa
pdb|3CSN|B Chain B, Structure Of The Serratia Marcescens Hemophore Receptor
Hasr In Complex With Its Hemophore Hasa
Length = 865
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 16/117 (13%)
Query: 109 HDY-GQIVIPVFCRVDPSHVRRQTGTFGDYFSKLGKRY----PEKMHRWANALTEAANLS 163
+DY G + + R D +R QTG +K G+RY P K R LT + +
Sbjct: 495 YDYDGWLTLEGGLRYDRYRLRGQTGLSYPDLAKDGQRYTIDNPCKALR----LTGCSTTT 550
Query: 164 GFDSDVIRPESKLVEEIANEILERLE--ETFQSYNKDLVGVEWRIKEIESLLCTGFA 218
D DV R + KL +A + +E E + +Y K WR I L G A
Sbjct: 551 REDWDVDRDQGKLSPTLAVAVRPGVEWLELYTTYGK-----SWRPPAITETLTNGSA 602
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,613,787
Number of Sequences: 62578
Number of extensions: 975438
Number of successful extensions: 2225
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2201
Number of HSP's gapped (non-prelim): 31
length of query: 963
length of database: 14,973,337
effective HSP length: 108
effective length of query: 855
effective length of database: 8,214,913
effective search space: 7023750615
effective search space used: 7023750615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)